Query psy2364
Match_columns 119
No_of_seqs 39 out of 41
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 23:05:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2364.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2364hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fo1d1 a.137.14.1 (D:52-114) 17.8 43 0.0031 20.4 2.6 31 31-61 27-57 (63)
2 d1p49a_ c.76.1.2 (A:) Steryl-s 16.3 56 0.0041 23.3 3.4 23 4-26 496-518 (553)
3 d2csha2 g.37.1.1 (A:61-104) Zi 14.1 12 0.00089 21.8 -0.7 19 22-40 20-38 (44)
4 d1af7a1 a.58.1.1 (A:11-91) Che 13.7 62 0.0045 18.6 2.5 20 4-23 32-51 (81)
5 d1v74a_ d.243.1.1 (A:) Colicin 13.7 39 0.0029 22.6 1.7 28 72-101 1-28 (107)
6 d1fsua_ c.76.1.2 (A:) Arylsulf 10.6 97 0.007 21.9 3.2 24 7-30 448-471 (492)
7 d1qwga_ c.1.27.1 (A:) (2r)-pho 9.6 35 0.0026 25.0 0.4 21 10-30 49-71 (251)
8 d2fmla1 a.4.5.68 (A:205-268) H 9.3 41 0.003 20.7 0.5 20 82-101 15-34 (64)
9 d1qo7a_ c.69.1.11 (A:) Bacteri 8.2 79 0.0058 22.0 1.8 16 10-25 23-38 (394)
10 d2hs5a1 a.4.5.6 (A:25-93) Puta 7.8 93 0.0068 17.5 1.8 26 7-32 2-27 (69)
No 1
>d2fo1d1 a.137.14.1 (D:52-114) Abnormal cell lineage protein 3, Lag-3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=17.78 E-value=43 Score=20.44 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.3
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q psy2364 31 VPRYDHSFNGLVERDIQETLLLKQKYLESKA 61 (119)
Q Consensus 31 e~RYeq~~ae~~EqerqeT~~L~QR~le~Ka 61 (119)
-..|+.+..|..--+|--|..|+.||-|---
T Consensus 27 ~~~~~k~r~e~i~~qravta~l~~r~tedee 57 (63)
T d2fo1d1 27 RANYEKARPEMIANQRAVTAHLFNRYTEDEE 57 (63)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHHHHHHHHHHHhhhhHH
Confidence 3579999999999999999999999985433
No 2
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.28 E-value=56 Score=23.35 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=19.0
Q ss_pred CCCCchhHHHHHHHHHHHHhhhh
Q psy2364 4 ALPPKRQAVVDRLRRRIENYRRH 26 (119)
Q Consensus 4 ~~~pkhsaVVeRLRrRIE~cRrH 26 (119)
.-||+...++++|+++++.+++-
T Consensus 496 ~~~~~~~~l~~~l~~~l~~~~~~ 518 (553)
T d1p49a_ 496 ASEPRFYEILKVMQEAADRHTQT 518 (553)
T ss_dssp TTTTSHHHHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHHHHHHHHhhh
Confidence 35899999999999999877653
No 3
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.06 E-value=12 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=15.6
Q ss_pred HhhhhcCCcchhhhhhhhh
Q psy2364 22 NYRRHQSDCVPRYDHSFNG 40 (119)
Q Consensus 22 ~cRrHh~~Ce~RYeq~~ae 40 (119)
.+-||-+.|+-||+..-++
T Consensus 20 SF~RH~~~C~k~~~~~~a~ 38 (44)
T d2csha2 20 SFHRHVTSCTKSYEAAKAE 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhhhhhhhccccccc
Confidence 4668999999999987665
No 4
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=13.75 E-value=62 Score=18.60 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=15.8
Q ss_pred CCCCchhHHHHHHHHHHHHh
Q psy2364 4 ALPPKRQAVVDRLRRRIENY 23 (119)
Q Consensus 4 ~~~pkhsaVVeRLRrRIE~c 23 (119)
+-+-|+..|..||.+|+..+
T Consensus 32 l~~~K~~~l~~RL~~rm~~~ 51 (81)
T d1af7a1 32 LADHKRDMVYNRLVRRLRAL 51 (81)
T ss_dssp CCGGGHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHh
Confidence 44678899999999998643
No 5
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=13.72 E-value=39 Score=22.59 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCCccccCcccccchhhhhhcccccccCCC
Q psy2364 72 LPSQLDSGLHNASLPYHKAVSTHIDDIDSM 101 (119)
Q Consensus 72 q~e~~~~g~~~~~~~qqk~~kr~~d~~~~~ 101 (119)
+++|..+|.-+...+|.|+ .||.|.+-.
T Consensus 1 ~~~pLds~~ftrkqL~kkf--kHa~DFGi~ 28 (107)
T d1v74a_ 1 LNDPLDSGRFSRKQLDKKY--KHAGDFGIS 28 (107)
T ss_dssp CCCTTCBTTBCHHHHHHHG--GGGGGGTCC
T ss_pred CCCCccCccchHHHHhHhh--ccccccccc
Confidence 4688889999999999999 499887654
No 6
>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.58 E-value=97 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHHHhhhhcCCc
Q psy2364 7 PKRQAVVDRLRRRIENYRRHQSDC 30 (119)
Q Consensus 7 pkhsaVVeRLRrRIE~cRrHh~~C 30 (119)
..+..|+++|+++++.++++..+.
T Consensus 448 ~~~p~~~~~l~~~L~~~~~~~~~~ 471 (492)
T d1fsua_ 448 REYPHIVTKLLSRLQFYHKHSVPV 471 (492)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhCHHHHHHHHHHHHHHHHHcCCC
Confidence 467889999999999999887554
No 7
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.58 E-value=35 Score=24.98 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=16.2
Q ss_pred hHHHHH--HHHHHHHhhhhcCCc
Q psy2364 10 QAVVDR--LRRRIENYRRHQSDC 30 (119)
Q Consensus 10 saVVeR--LRrRIE~cRrHh~~C 30 (119)
++++.+ |++.|+.|++|....
T Consensus 49 ~~l~p~~~l~eKI~l~~~~~V~v 71 (251)
T d1qwga_ 49 SAVIDRDVVKEKINYYKDWGIKV 71 (251)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCEE
T ss_pred eeecCHHHHHHHHHHHHHcCCeE
Confidence 455655 999999999997654
No 8
>d2fmla1 a.4.5.68 (A:205-268) Hypothetical protein EF2700, C-terminal domain {Enterococcus faecalis [TaxId: 1351]}
Probab=9.28 E-value=41 Score=20.74 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.7
Q ss_pred cccchhhhhhcccccccCCC
Q psy2364 82 NASLPYHKAVSTHIDDIDSM 101 (119)
Q Consensus 82 ~~~~~qqk~~kr~~d~~~~~ 101 (119)
.+-.++-.|++.++|.|||.
T Consensus 15 ~AR~Vya~Fl~~~~~~IDnS 34 (64)
T d2fmla1 15 EARKVFAKFLGVDYRSIDHS 34 (64)
T ss_dssp HHHHHHHHHHTSCGGGSCHH
T ss_pred HHHHHHHHHhCCCcccccch
Confidence 34567889999999999985
No 9
>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]}
Probab=8.23 E-value=79 Score=22.00 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHhhh
Q psy2364 10 QAVVDRLRRRIENYRR 25 (119)
Q Consensus 10 saVVeRLRrRIE~cRr 25 (119)
++.+|.|++|++..|=
T Consensus 23 ~~~~~~l~~~l~~~r~ 38 (394)
T d1qo7a_ 23 DEQLDDLKTLVRLSKI 38 (394)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5667777777777764
No 10
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=7.82 E-value=93 Score=17.50 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHHHHhhhhcCCcch
Q psy2364 7 PKRQAVVDRLRRRIENYRRHQSDCVP 32 (119)
Q Consensus 7 pkhsaVVeRLRrRIE~cRrHh~~Ce~ 32 (119)
++...|++.|+.+|..-.=.-.+-.|
T Consensus 2 s~~~qi~~~l~~~I~~g~~~~G~~l~ 27 (69)
T d2hs5a1 2 SRTTRVAGILRDAIIDGTFRPGARLS 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTCEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCccC
Confidence 46678999999999876655555443
Done!