RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2364
(119 letters)
>2f8x_M MAM-1, mastermind-like protein 1; notch, CSL, HES-1, ankyrin
repeats, REL- homology region, transcription/DNA
complex; 3.25A {Homo sapiens} PDB: 3nbn_C 3v79_M*
Length = 63
Score = 75.1 bits (184), Expect = 1e-19
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 7 PKRQAVVDRLRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQKYLESKAKRSK 65
P+ AV++RLRRRIE RRH S C RY+ +E + Q T L Q+ +++KAKR+
Sbjct: 3 PRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALHQRCIQAKAKRAG 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.17
Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 40/135 (29%)
Query: 8 KRQAVVDRLRRRIENYRRHQ-----SDCV---PR--YDHSFNGLVERDIQETL--LLKQK 55
K + R +N+ + D V P H F G + I+E ++ +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIRENYSAMIFET 1695
Query: 56 YLESKAKRSKNKPE--KKLPSQLDSG----LHN------ASLPYHKAVS----------T 93
++ K K K E + S L A +
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT----LMEKAAFEDLKSKG 1751
Query: 94 HIDDIDSMCGHSL-E 107
I + GHSL E
Sbjct: 1752 LIPADATFAGHSLGE 1766
Score = 29.6 bits (66), Expect = 0.22
Identities = 17/111 (15%), Positives = 25/111 (22%), Gaps = 32/111 (28%)
Query: 6 PPKRQAVVDRLRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETL-----LLKQKYLESK 60
++ + R D + +I E L + YL S
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL------NILEWLENPSNTPDKDYLLS- 233
Query: 61 AKRSKNKPEKKLP----SQL--------DSGLHNASL-PYHKAVSTHIDDI 98
S P QL G L Y K + H +
Sbjct: 234 IPIS-------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Score = 26.6 bits (58), Expect = 2.4
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 44/132 (33%)
Query: 4 ALPPKRQAVVDRLRRRIENY------------RRHQS---DCVPRYDHS----FNG---- 40
L + + + + I+NY ++ S V + F G
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 41 ---LVE-RDIQET--LLLKQKYLESKAK------RSKNKPEKKLPSQLD--SGLHNAS-- 84
E RD+ +T +L+ ++ A+ R+ EK L+ L N S
Sbjct: 167 DDYFEELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 85 --LPY--HKAVS 92
Y +S
Sbjct: 226 PDKDYLLSIPIS 237
>1ycy_A Conserved hypothetical protein; structural genomics, southeast
collaboratory for structural genomics, secsg, protein
structure initiative; 2.80A {Pyrococcus furiosus} SCOP:
b.38.1.4
Length = 71
Score = 26.5 bits (58), Expect = 0.93
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 16 LRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETLLLK 53
L + ++ ++ H+ DHSF G +E +E +LLK
Sbjct: 7 LEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEVILLK 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.1
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 10 QAVVDRLRRR--IENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQKYLESKAKRSKNK 67
VV++L + +E ++ + + V+ + + L + ++
Sbjct: 405 MVVVNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFD 460
Query: 68 PEKKLPSQLDSGLHNASLPYHKAVSTHIDDIDSM 101
+ +P LD ++ + +H H + +
Sbjct: 461 SDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLF 493
Score = 27.1 bits (59), Expect = 1.7
Identities = 10/51 (19%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 9 RQAVVDRLRRRIENYRRHQSDCVPRYDHSFNGLVERDIQ-ETLLLKQKYLE 58
++++ L++ ++ Y+ + D P+Y+ N +++ + E L+ KY +
Sbjct: 517 SGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 27.1 bits (59), Expect = 1.9
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 29/102 (28%)
Query: 17 RRRIENYRRHQS----DCVP----RYDHSFNG--LVERD-IQETLLLKQKYL-----ESK 60
R +++Y ++ D +P +Y +S G L + + L + +L E K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 61 AKRSK---NKPEKKLPSQLDSGLHNASLPYHKAVSTHIDDID 99
+ N L + L ++K +I D D
Sbjct: 507 IRHDSTAWNASGSILNTLQQ-------LKFYKP---YICDND 538
Score = 26.0 bits (56), Expect = 3.9
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 49/153 (32%)
Query: 3 EALPPKRQA----------VVDRLRR---RIENYRRHQSDCVPRY-DHSFNGLVERDIQE 48
+ LP R+ + + +R +N++ D + + S N L + ++
Sbjct: 316 QDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 49 ---------------TLLLK-----------QKYLESKAKRS---KNKPEKK--LPS-QL 76
T+LL + K S K E +PS L
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 77 DSGLHNASLPY-HKAVSTHIDDIDSMCGHSLEP 108
+ + + H+++ H + + L P
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 2.4
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 29/89 (32%)
Query: 11 AVVDRLR---RRIENYRRHQSDCVPRYDHSFNGLVERD------IQETLLLKQKYLE--- 58
A DRL I +R Q R L E D QE +K LE
Sbjct: 75 AQADRLTQEPESIRKWREEQR---KR-------LQELDAASKVMEQEWREKAKKDLEEWN 124
Query: 59 -------SKAKRSKNKPEKKLPSQLDSGL 80
K K + +K Q D+ +
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPDADI 153
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5,
RNA processing, cleavage factor, diadenosine
tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo
sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A
3q2t_A 2j8q_A 3p5t_A 3p6y_A
Length = 208
Score = 25.3 bits (55), Expect = 5.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 3 EALPPKRQAVVDRLRRRIENYRRH 26
E L K +V R +R E + +
Sbjct: 32 EPLYEKDSSVAARFQRMREEFDKI 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 6.4
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 8/24 (33%)
Query: 70 KKLPSQL-----DS--GLH-NASL 85
KKL + L DS L A++
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,754,619
Number of extensions: 89682
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 22
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)