RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2364
         (119 letters)



>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 66

 Score = 25.6 bits (56), Expect = 0.60
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 16 LRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQ--KYLESKAK 62
          L + ++ ++ H+       DHSF G +E   +E +LLK     + ++ K
Sbjct: 3  LEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEVILLKDVVDVIGNRGK 51


>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 492

 Score = 26.3 bits (56), Expect = 1.2
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 5   LPPKRQAVVDRLRRRIENYRRHQSD-----CVPRYDHSFNGL 41
           L  +   +V +L  R++ Y +H          PR D    G+
Sbjct: 446 LSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKATGV 487


>d1iq8a4 d.17.6.1 (A:361-505) Archaeosine tRNA-guanine
          transglycosylase, C2 domain {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 145

 Score = 25.1 bits (55), Expect = 2.1
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 9  RQAVVDRLRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQKYLESKAKRSKNKP 68
          R  VV R + R ++      + V   +H   G V R +  T    Q   E   K  K   
Sbjct: 17 RWPVVRRAKERAKSINERFGELV---EHPIFGRVSRYLSLTYPFAQSEAEDDFKIEKPTK 73

Query: 69 EKKL 72
          E  +
Sbjct: 74 EDAI 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,549
Number of extensions: 17244
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)