BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2365
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of
The Heterodimer E47NEUROD1 BOUND TO DNA
pdb|2QL2|D Chain D, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of
The Heterodimer E47NEUROD1 BOUND TO DNA
Length = 60
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231
RR AN +ER R +N A +LR+ +P KLSKI+TLRLA +YI L +IL +
Sbjct: 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59
>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
Length = 88
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231
VKRR T N ER+R + +F LR+ IP + ++ K K+ L+ AT+YI L E
Sbjct: 5 VKRR-THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYI--LSVQAEE 61
Query: 232 DDIISIDDF 240
+IS +D
Sbjct: 62 QKLISEEDL 70
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 36.6 bits (83), Expect = 0.016, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDD 233
+R N ER+R I ++F LR+ +P++ + K S+ + L AT YI Y+ + + T
Sbjct: 4 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKVHTLQ 62
Query: 234 IISIDDFK 241
IDD K
Sbjct: 63 -QDIDDLK 69
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 165 DLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISY 224
D+ + +R N ER+R I ++F LR+ +P++ + K S+ + L AT YI Y
Sbjct: 3 DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQY 61
Query: 225 LMKILETDDIISIDDFK 241
+ + T IDD K
Sbjct: 62 MRRKNHTHQ-QDIDDLK 77
>pdb|2LFH|A Chain A, Solution Nmr Structure Of The Helix-Loop-Helix Domain Of
Human Id3 Protein, Northeast Structural Genomics
Consortium Target Hr3111a
pdb|2LFH|B Chain B, Solution Nmr Structure Of The Helix-Loop-Helix Domain Of
Human Id3 Protein, Northeast Structural Genomics
Consortium Target Hr3111a
Length = 68
Score = 35.0 bits (79), Expect = 0.041, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 189 INNAFSDLRECIPNVPSDTKLSKIKTLRLATSYI 222
+N+ +S LRE +P VP T+LS+++ L+ YI
Sbjct: 29 MNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYI 62
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 35.0 bits (79), Expect = 0.050, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDD 233
+R N ER+R I ++F LR+ +P++ + K S+ + L AT YI Y+ + T
Sbjct: 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQ 60
Query: 234 IISIDDFK 241
IDD K
Sbjct: 61 -QDIDDLK 67
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 34.3 bits (77), Expect = 0.089, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDD 233
+R N ER+R I ++F LR+ +P++ + K S+ + L AT YI Y+ + T
Sbjct: 3 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQ 61
Query: 234 IISIDDFK 241
IDD K
Sbjct: 62 -QDIDDLK 68
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 33.9 bits (76), Expect = 0.098, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDD 233
+R N ER+R I ++F LR+ +P++ + K S+ + L AT YI Y+ + T
Sbjct: 1 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQ 59
Query: 234 IISIDDFK 241
IDD K
Sbjct: 60 -QDIDDLK 66
>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
Length = 97
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 189 INNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231
+N+ +S L+E +P++P + K+SK++ L+ YI L L++
Sbjct: 40 MNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82
>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
Length = 65
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 173 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTK---LSKIKTLRLATSYISYL 225
KRR N+ ERRR INN L + IP+ ++ SK L A+ YI L
Sbjct: 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 107 YTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDL 166
+ K + + + P YPNVKH Y+ T +L ++A +K G K +
Sbjct: 201 WCKEHRRTLITPPGYPNVKHFSWDKYLE---ETNSLPAPARAFKVKPPHGFQKKMK---- 253
Query: 167 PIIRVVKRRN 176
+ VV +RN
Sbjct: 254 --LEVVDKRN 261
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 107 YTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDL 166
+ K + + + P YPNVKH Y+ T +L ++A +K G K +
Sbjct: 201 WCKEHRRTLITPPGYPNVKHFSWDKYLE---ETNSLPAPARAFKVKPPHGFQKKMK---- 253
Query: 167 PIIRVVKRRN 176
+ VV +RN
Sbjct: 254 --LEVVDKRN 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,812,881
Number of Sequences: 62578
Number of extensions: 358752
Number of successful extensions: 586
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 16
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)