Query psy2365
Match_columns 285
No_of_seqs 199 out of 774
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 23:06:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3960|consensus 100.0 1.2E-29 2.5E-34 233.4 15.0 147 55-236 20-179 (284)
2 KOG4029|consensus 99.7 1.2E-17 2.7E-22 150.0 7.7 65 171-235 106-171 (228)
3 KOG3898|consensus 99.6 4.4E-16 9.4E-21 143.6 6.2 68 170-237 68-135 (254)
4 PF00010 HLH: Helix-loop-helix 99.5 1.3E-13 2.8E-18 98.5 6.7 53 174-226 1-55 (55)
5 cd00083 HLH Helix-loop-helix d 99.4 1.1E-12 2.5E-17 93.5 7.7 57 173-229 3-59 (60)
6 KOG4395|consensus 99.3 1.6E-12 3.5E-17 120.7 6.3 64 171-234 171-234 (285)
7 smart00353 HLH helix loop heli 99.3 8.6E-12 1.9E-16 87.7 7.0 52 179-230 1-52 (53)
8 KOG4447|consensus 99.3 5.2E-12 1.1E-16 110.2 5.0 66 168-234 72-137 (173)
9 KOG3910|consensus 99.1 1.1E-10 2.3E-15 116.7 6.2 83 168-250 520-603 (632)
10 KOG0561|consensus 99.0 7.4E-10 1.6E-14 105.5 6.1 58 169-227 55-112 (373)
11 smart00520 BASIC Basic domain 98.6 4.3E-08 9.2E-13 78.9 3.2 76 56-154 8-83 (91)
12 KOG1319|consensus 98.3 7.1E-07 1.5E-11 80.8 5.8 70 173-243 61-134 (229)
13 KOG1318|consensus 98.2 6.7E-06 1.4E-10 81.3 9.2 68 164-231 223-291 (411)
14 KOG2483|consensus 97.9 2.4E-05 5.2E-10 72.3 6.4 60 172-231 57-116 (232)
15 PF01586 Basic: Myogenic Basic 97.9 3.2E-06 6.9E-11 67.7 0.2 70 63-154 14-83 (86)
16 KOG4447|consensus 97.2 0.00027 5.9E-09 62.4 2.8 57 172-229 19-76 (173)
17 KOG4304|consensus 97.1 0.00048 1E-08 64.3 4.3 56 174-229 32-92 (250)
18 KOG3561|consensus 96.9 0.0013 2.9E-08 69.9 5.7 58 171-228 17-75 (803)
19 KOG2588|consensus 96.2 0.0033 7.3E-08 67.7 3.4 60 173-234 275-334 (953)
20 PLN03217 transcription factor 90.0 0.59 1.3E-05 38.1 4.6 50 183-232 16-68 (93)
21 KOG3558|consensus 87.9 0.75 1.6E-05 49.0 4.9 51 182-234 54-106 (768)
22 KOG3560|consensus 78.8 1.3 2.9E-05 46.4 2.2 46 188-234 39-89 (712)
23 KOG3559|consensus 56.9 9.8 0.00021 39.1 3.0 46 183-228 10-56 (598)
24 PF05687 DUF822: Plant protein 42.9 32 0.00069 30.6 3.6 28 174-201 11-38 (150)
25 PF08651 DASH_Duo1: DASH compl 32.3 1.5E+02 0.0032 23.4 5.5 22 180-201 4-25 (78)
26 KOG4395|consensus 29.1 20 0.00042 34.6 0.2 48 171-229 79-132 (285)
27 PF04839 PSRP-3_Ycf65: Plastid 26.5 34 0.00074 25.2 1.0 38 190-227 10-47 (49)
28 PLN02705 beta-amylase 22.3 3E+02 0.0065 29.9 7.3 28 175-202 85-112 (681)
29 PRK02724 hypothetical protein; 20.6 1.1E+02 0.0023 25.9 2.9 38 190-227 44-81 (104)
No 1
>KOG3960|consensus
Probab=99.96 E-value=1.2e-29 Score=233.42 Aligned_cols=147 Identities=29% Similarity=0.403 Sum_probs=118.7
Q ss_pred cccccCCCCcccccCCCCCCCCCcceeecccCCCCCCCCcccccccccccCCCcccc----ccCCC---------CCCCC
Q psy2365 55 LSNITTGATDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYY----YQDGV---------GPGAY 121 (285)
Q Consensus 55 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~----~~~~~---------gpg~~ 121 (285)
||.|+. ++.||+.+||+.++.+||-.. ... ++ .+..++++ ++.++ .|+.-
T Consensus 20 l~~F~~--~p~~~Dg~n~~~~~~~~~e~~----------p~y--~~---t~~t~s~~~~~~kpe~~~~~ps~v~p~~~~~ 82 (284)
T KOG3960|consen 20 LCSFAQ--TPDFYDGENFDSPDLRFFEAY----------PLY--PR---TAGTGSLCSQDFKPEAHSHFPSAVHPAPGSD 82 (284)
T ss_pred cccccc--CccccCCCCCCchhhcccccC----------CCC--cc---ccccccccccccCccccccCccccccCCCCc
Confidence 999999 499999999999999999321 111 12 22222333 22222 23444
Q ss_pred CCcccccccccccCCcccchhccccccCCCCCCCCCCCCCCCCCChhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy2365 122 PNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIP 201 (285)
Q Consensus 122 e~vk~~~e~s~~gld~~~~~l~~~sk~~s~ks~~g~~~~rr~~~~~~~~~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP 201 (285)
| .+|++.++++..+.++.|+.|+||+|++|+. .++||++|++|||+|+++||+||+.||++.-
T Consensus 83 E-de~v~ap~~~shh~~g~cl~wackackrks~----------------svDRRKAATMRERRRLkKVNEAFE~LKRrT~ 145 (284)
T KOG3960|consen 83 E-DEHVRAPSVDSHHQAGQCLLWACKACKRKST----------------SVDRRKAATMRERRRLKKVNEAFETLKRRTS 145 (284)
T ss_pred c-cccccCCCCCcccCCcchHHHhhhhcccccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4 5899999988889999999999999997754 5799999999999999999999999999998
Q ss_pred CCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCCCC
Q psy2365 202 NVPSDTKLSKIKTLRLATSYISYLMKILETDDIIS 236 (285)
Q Consensus 202 ~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~ 236 (285)
.+| +|||+||||||.||+||+.||.||++.....
T Consensus 146 ~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 146 SNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred CCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 776 6999999999999999999999999887743
No 2
>KOG4029|consensus
Probab=99.71 E-value=1.2e-17 Score=149.97 Aligned_cols=65 Identities=49% Similarity=0.777 Sum_probs=60.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCC-CCCcchHHhhHHHHHHHHHHHHHHhhCCCC
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPS-DTKLSKIKTLRLATSYISYLMKILETDDII 235 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~ 235 (285)
...+|.++|+|||+|++.||.||..||.+||..+. ++|||||+|||+||.||.+|+++|+.....
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 34678899999999999999999999999999998 999999999999999999999999888753
No 3
>KOG3898|consensus
Probab=99.62 E-value=4.4e-16 Score=143.61 Aligned_cols=68 Identities=41% Similarity=0.544 Sum_probs=62.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCCCCh
Q psy2365 170 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISI 237 (285)
Q Consensus 170 ~~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~ 237 (285)
....||.++|.|||+|||+||+||+.||.+||.++.++||+||||||+|-+||..|+.++........
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~~ 135 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPLL 135 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCccc
Confidence 35678999999999999999999999999999999999999999999999999999999877765433
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.47 E-value=1.3e-13 Score=98.52 Aligned_cols=53 Identities=45% Similarity=0.687 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCC--CCCCCcchHHhhHHHHHHHHHHH
Q psy2365 174 RRNTANKKERRRTQSINNAFSDLRECIPNV--PSDTKLSKIKTLRLATSYISYLM 226 (285)
Q Consensus 174 RR~~aN~RER~R~~~lN~AF~~LR~~lP~~--p~~kKLSKietLr~Ai~YI~~Lq 226 (285)
||..+|.+||+|+..||.+|+.|+..||.. ....|++|++||+.||+||..||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 588999999999999999999999999984 36789999999999999999997
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.40 E-value=1.1e-12 Score=93.50 Aligned_cols=57 Identities=46% Similarity=0.747 Sum_probs=53.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHH
Q psy2365 173 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229 (285)
Q Consensus 173 ~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL 229 (285)
.+|..+|.+||.|+..||.+|+.|+..||.....+|++|+.||+.|++||..|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468889999999999999999999999998766899999999999999999999865
No 6
>KOG4395|consensus
Probab=99.33 E-value=1.6e-12 Score=120.75 Aligned_cols=64 Identities=42% Similarity=0.545 Sum_probs=59.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCC
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 234 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 234 (285)
...||.++|+|||+||+.||.||+.||.+||....++||||.|||++|..||..|..+|.....
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~ 234 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMS 234 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccc
Confidence 3468999999999999999999999999999999999999999999999999999999966544
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=8.6e-12 Score=87.67 Aligned_cols=52 Identities=48% Similarity=0.780 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHh
Q psy2365 179 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 230 (285)
Q Consensus 179 N~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 230 (285)
|.+||+|+..||.+|+.|+..||......|++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999976667899999999999999999998764
No 8
>KOG4447|consensus
Probab=99.26 E-value=5.2e-12 Score=110.22 Aligned_cols=66 Identities=50% Similarity=0.761 Sum_probs=60.0
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCC
Q psy2365 168 IIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 234 (285)
Q Consensus 168 ~~~~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 234 (285)
..+..++|.-||.|||+|-+.||+||..||+.||++|. .|||||.||++|..||.+|..+|.....
T Consensus 72 ~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPs-dklSkiqtLklA~ryidfl~~vl~s~l~ 137 (173)
T KOG4447|consen 72 LDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPS-DKLSKIQTLKLAARYIDFLYQVLQSDLE 137 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCc-cccccccchhhcccCCchhhhccccccc
Confidence 34556789999999999999999999999999999986 5999999999999999999999987733
No 9
>KOG3910|consensus
Probab=99.09 E-value=1.1e-10 Score=116.75 Aligned_cols=83 Identities=25% Similarity=0.305 Sum_probs=73.4
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCCCChhHHHhhhcc
Q psy2365 168 IIRVVKRRNTANKKERRRTQSINNAFSDL-RECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKADLSN 246 (285)
Q Consensus 168 ~~~~~~RR~~aN~RER~R~~~lN~AF~~L-R~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~~~~~~~l~s 246 (285)
.+|.++||.+.|+|||.|+++||+||.+| |.|.-++..+|.-+|+-||.+|+.-|..|++.+++...+++..+.++...
T Consensus 520 aeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNLNPKaaclkRRee 599 (632)
T KOG3910|consen 520 AEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNLNPKAACLKRREE 599 (632)
T ss_pred hhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccCChhhhhhhccch
Confidence 34677899999999999999999999999 55556777899999999999999999999999999999999988888776
Q ss_pred CCcC
Q psy2365 247 HSSH 250 (285)
Q Consensus 247 ~ss~ 250 (285)
+...
T Consensus 600 Ekvs 603 (632)
T KOG3910|consen 600 EKVS 603 (632)
T ss_pred hhhc
Confidence 6554
No 10
>KOG0561|consensus
Probab=98.97 E-value=7.4e-10 Score=105.53 Aligned_cols=58 Identities=41% Similarity=0.517 Sum_probs=52.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHH
Q psy2365 169 IRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 227 (285)
Q Consensus 169 ~~~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~ 227 (285)
.+.+.||.-||-.||+||+.||.+|..||..||.-. +.||||..||+...+||..|..
T Consensus 55 ~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 55 PERRMRREIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred HHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHHh
Confidence 344578999999999999999999999999999754 6799999999999999999964
No 11
>smart00520 BASIC Basic domain in HLH proteins of MYOD family.
Probab=98.56 E-value=4.3e-08 Score=78.90 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=53.4
Q ss_pred ccccCCCCcccccCCCCCCCCCcceeecccCCCCCCCCcccccccccccCCCccccccCCCCCCCCCCcccccccccccC
Q psy2365 56 SNITTGATDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNL 135 (285)
Q Consensus 56 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~gpg~~e~vk~~~e~s~~gl 135 (285)
+-|.+. |+||+++||+++++.+| ||.+. .++.++.+. +++++.+ .++.+||..|+. .
T Consensus 8 ~yF~~~--~~FYD~~~f~~~dl~~f------------e~~~~-~~l~~~g~~---l~~~~~~---~~~~ehv~~p~~--~ 64 (91)
T smart00520 8 CYFFPS--QRFYDGDCFPSPDLGFF------------EDLGP-RELGHCGAL---LKDELRG---SEEEEHVRAPSG--H 64 (91)
T ss_pred CCcCch--hhcccCcccCcccCCcc------------cccCc-ccccccccc---cCcccCC---ccccccccCCCC--C
Confidence 345554 89999999999999998 67663 114444321 2333322 235778888854 6
Q ss_pred CcccchhccccccCCCCCC
Q psy2365 136 DTATKTLRTVSKAGSIKSS 154 (285)
Q Consensus 136 d~~~~~l~~~sk~~s~ks~ 154 (285)
+..++||.|+||+|++|+.
T Consensus 65 h~~g~CL~WACk~CkrK~~ 83 (91)
T smart00520 65 HQPGQCLPWACKACKRKSV 83 (91)
T ss_pred CCCCccHHHHHHHhcccCc
Confidence 8899999999999998865
No 12
>KOG1319|consensus
Probab=98.35 E-value=7.1e-07 Score=80.80 Aligned_cols=70 Identities=26% Similarity=0.493 Sum_probs=55.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCC----CCCCcchHHhhHHHHHHHHHHHHHHhhCCCCChhHHHhh
Q psy2365 173 KRRNTANKKERRRTQSINNAFSDLRECIPNVP----SDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKAD 243 (285)
Q Consensus 173 ~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p----~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~~~~~~~ 243 (285)
.||.++..-||+|+.-||.+++.|+.+||.-. .+.||||.-||+.||+||.+|..-....+. +...++++
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~-e~s~L~k~ 134 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE-EVSTLRKD 134 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35777999999999999999999999999632 346999999999999999999765444333 23444443
No 13
>KOG1318|consensus
Probab=98.19 E-value=6.7e-06 Score=81.34 Aligned_cols=68 Identities=29% Similarity=0.441 Sum_probs=58.1
Q ss_pred CCChhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-CCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 164 PDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPN-VPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 164 ~~~~~~~~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~-~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
......+.++||..||+=||+|+-+||....+|.+.||. .-.+-|+.|--||+.+++||..|++.++.
T Consensus 223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 344555667778889999999999999999999999995 34566889999999999999999988763
No 14
>KOG2483|consensus
Probab=97.89 E-value=2.4e-05 Score=72.33 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=52.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
...|..+|+.||+|+-.|...|+.||+.||.++..++-.-+.||+.|++||..|+.....
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 457999999999999999999999999999877554444899999999999999876544
No 15
>PF01586 Basic: Myogenic Basic domain; InterPro: IPR002546 This basic domain is found in the MyoD family of muscle specific proteins that control muscle development. The bHLH region of the MyoD family includes the basic domain and the Helix-loop-helix (HLH) motif. The bHLH region mediates specific DNA binding []. With 12 residues of the basic domain involved in DNA binding []. The basic domain forms an extended alpha helix in the structure.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007517 muscle organ development, 0005634 nucleus; PDB: 1MDY_C.
Probab=97.87 E-value=3.2e-06 Score=67.70 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=1.4
Q ss_pred CcccccCCCCCCCCCcceeecccCCCCCCCCcccccccccccCCCccccccCCCCCCCCCCcccccccccccCCcccchh
Q psy2365 63 TDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTL 142 (285)
Q Consensus 63 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~gpg~~e~vk~~~e~s~~gld~~~~~l 142 (285)
++.||+++||..+++.++ |+.+ .+..+...+ .++ ....-+..+||+.|+ +.+..++||
T Consensus 14 ~~~fYd~~~~~~s~l~f~------------e~~~--~~~~~~~~l----~~~--~~~~~~~~ehv~aP~--~~H~~G~CL 71 (86)
T PF01586_consen 14 DQRFYDGPCFPSSDLDFF------------EDLD--PRLGSEGGL----SPD--EGSESEEEEHVLAPS--GHHCPGQCL 71 (86)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccCCCCCcccccCc------------ccCC--ccccccccc----CCC--cCcCccccccccCCC--CCCCCCcch
Confidence 378999999999999988 6666 444444322 121 111223567999987 467888999
Q ss_pred ccccccCCCCCC
Q psy2365 143 RTVSKAGSIKSS 154 (285)
Q Consensus 143 ~~~sk~~s~ks~ 154 (285)
.|+||+|++|+.
T Consensus 72 ~WACKaCKRKt~ 83 (86)
T PF01586_consen 72 LWACKACKRKTV 83 (86)
T ss_dssp -------S---T
T ss_pred HHHhHhhhccCc
Confidence 999999999864
No 16
>KOG4447|consensus
Probab=97.16 E-value=0.00027 Score=62.42 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=49.0
Q ss_pred HHhhhhhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHH
Q psy2365 172 VKRRNTANKK-ERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229 (285)
Q Consensus 172 ~~RR~~aN~R-ER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL 229 (285)
+..|..+|.| ||.|.+.+|.+|.-|+..+|-.|. .+.+|+.+||.+..||..|.++-
T Consensus 19 ~~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa-~gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 19 VSEEECDRQRKERGRKRRLSDASTLLGKLEPGSPA-DGKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCC-cccccccccccCCCchhhHHHHH
Confidence 4456666666 999999999999999999998776 58899999999999999997753
No 17
>KOG4304|consensus
Probab=97.13 E-value=0.00048 Score=64.29 Aligned_cols=56 Identities=25% Similarity=0.399 Sum_probs=47.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCCcchHHhhHHHHHHHHHHHHHH
Q psy2365 174 RRNTANKKERRRTQSINNAFSDLRECIPNVP-----SDTKLSKIKTLRLATSYISYLMKIL 229 (285)
Q Consensus 174 RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p-----~~kKLSKietLr~Ai~YI~~Lq~lL 229 (285)
|+...-.-||+|+-.||+.++.||++|+..- ...||-|.|||.++++|.+.|+..-
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 4455678999999999999999999999532 2269999999999999999998743
No 18
>KOG3561|consensus
Probab=96.90 E-value=0.0013 Score=69.91 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=51.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCcchHHhhHHHHHHHHHHHHH
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNV-PSDTKLSKIKTLRLATSYISYLMKI 228 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~-p~~kKLSKietLr~Ai~YI~~Lq~l 228 (285)
.+..|..+|.-||+|+.++|.-+++|-..||+. .-.+|+-|..|||.||..|+.+.+.
T Consensus 17 ~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 17 DRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 345689999999999999999999999999963 3468999999999999999999885
No 19
>KOG2588|consensus
Probab=96.24 E-value=0.0033 Score=67.72 Aligned_cols=60 Identities=30% Similarity=0.429 Sum_probs=53.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCC
Q psy2365 173 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 234 (285)
Q Consensus 173 ~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 234 (285)
.||.+||.=|++=+-.||+-..+||+.||..+ -||.|-++||.||+||+.|+......+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~--aKl~kSavLr~ai~~i~dl~~~nq~lk~ 334 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTE--AKLNKSAVLRKAIDYIEDLQGYNQKLKL 334 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccH--hhhhhhhhHHHHHHHHHHhhccccccch
Confidence 57999999999999999999999999999654 4999999999999999999887655444
No 20
>PLN03217 transcription factor ATBS1; Provisional
Probab=89.98 E-value=0.59 Score=38.11 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC---CCCCcchHHhhHHHHHHHHHHHHHHhhC
Q psy2365 183 RRRTQSINNAFSDLRECIPNVP---SDTKLSKIKTLRLATSYISYLMKILETD 232 (285)
Q Consensus 183 R~R~~~lN~AF~~LR~~lP~~p---~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 232 (285)
|.--.+||+-..+|+..||... ...|.|-..+|+.+++||..|..-+++-
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL 68 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL 68 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999743 3457777899999999999998866553
No 21
>KOG3558|consensus
Probab=87.89 E-value=0.75 Score=49.05 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCC--CCCcchHHhhHHHHHHHHHHHHHHhhCCC
Q psy2365 182 ERRRTQSINNAFSDLRECIPNVPS--DTKLSKIKTLRLATSYISYLMKILETDDI 234 (285)
Q Consensus 182 ER~R~~~lN~AF~~LR~~lP~~p~--~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 234 (285)
-|.|+.+=|+-|.+|.++|| +|. .--|-|+.|+|+||.|.+ |.+++.....
T Consensus 54 ARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~~ 106 (768)
T KOG3558|consen 54 ARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGDP 106 (768)
T ss_pred hhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCCc
Confidence 46788999999999999999 563 458999999999999986 5666655444
No 22
>KOG3560|consensus
Probab=78.80 E-value=1.3 Score=46.38 Aligned_cols=46 Identities=30% Similarity=0.603 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCCCCC--CCcchHHhhHHHHHHHH---HHHHHHhhCCC
Q psy2365 188 SINNAFSDLRECIPNVPSD--TKLSKIKTLRLATSYIS---YLMKILETDDI 234 (285)
Q Consensus 188 ~lN~AF~~LR~~lP~~p~~--kKLSKietLr~Ai~YI~---~Lq~lL~~~~~ 234 (285)
.||.-++.|...||. +.+ .||-|+.|||+++.|++ +.|.+|.....
T Consensus 39 RLNaELD~lAsLLPf-pqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~ 89 (712)
T KOG3560|consen 39 RLNAELDHLASLLPF-PQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSR 89 (712)
T ss_pred HhhhHHHHHHHhcCC-CHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCcc
Confidence 479999999999995 433 39999999999999986 45677765544
No 23
>KOG3559|consensus
Probab=56.93 E-value=9.8 Score=39.08 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC-CCCCcchHHhhHHHHHHHHHHHHH
Q psy2365 183 RRRTQSINNAFSDLRECIPNVP-SDTKLSKIKTLRLATSYISYLMKI 228 (285)
Q Consensus 183 R~R~~~lN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~l 228 (285)
|.|+++=|--|-+|.+.||-.. -.-.|-|..|+|++..||++-.-.
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vF 56 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVF 56 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhc
Confidence 3566777999999999999311 122499999999999999865543
No 24
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=42.90 E-value=32 Score=30.61 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy2365 174 RRNTANKKERRRTQSINNAFSDLRECIP 201 (285)
Q Consensus 174 RR~~aN~RER~R~~~lN~AF~~LR~~lP 201 (285)
-|.....|||+|+.---.-|..||++==
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555567999999777777999999754
No 25
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=32.28 E-value=1.5e+02 Score=23.37 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q psy2365 180 KKERRRTQSINNAFSDLRECIP 201 (285)
Q Consensus 180 ~RER~R~~~lN~AF~~LR~~lP 201 (285)
.||..-+++||.+|+.+-..|=
T Consensus 4 ~kEL~~Lr~IN~~ie~~~~~L~ 25 (78)
T PF08651_consen 4 EKELEQLRKINPVIEGLIETLR 25 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998865543
No 26
>KOG4395|consensus
Probab=29.05 E-value=20 Score=34.64 Aligned_cols=48 Identities=46% Similarity=0.743 Sum_probs=36.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCcchHHhhHHHHHHHHHHHHHH
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIP------NVPSDTKLSKIKTLRLATSYISYLMKIL 229 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP------~~p~~kKLSKietLr~Ai~YI~~Lq~lL 229 (285)
...+|..+|. ++++| |-||| ..|.+.+|.|+-+++.+..||..++.-.
T Consensus 79 ~~~l~~~~n~-----a~e~~------~h~v~A~~~e~a~p~~~~l~~~~~~~~~k~~~~~~~~~~ 132 (285)
T KOG4395|consen 79 SKYLRKTANA-----AREIN------RHCVPAIKGEDAAPTNEKLTKITTLRLAKKYITMLTDSI 132 (285)
T ss_pred HHhhhhhhhH-----HHHHh------hhccccccccccCchhhhhhcccccccccCCCcCCcccc
Confidence 3567888884 33344 77888 4567889999999999999999987543
No 27
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=26.54 E-value=34 Score=25.22 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHH
Q psy2365 190 NNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 227 (285)
Q Consensus 190 N~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~ 227 (285)
++|-+.||..|-.-|=-..-.||++|-.|.+-|+.=|+
T Consensus 10 ~DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 10 EDAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp S-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 36778888877544433466789999999999987664
No 28
>PLN02705 beta-amylase
Probab=22.28 E-value=3e+02 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCCC
Q psy2365 175 RNTANKKERRRTQSINNAFSDLRECIPN 202 (285)
Q Consensus 175 R~~aN~RER~R~~~lN~AF~~LR~~lP~ 202 (285)
|.....|||+|+.---.-|.-||++=-.
T Consensus 85 ~e~~~~rer~rrai~~ki~aglr~~g~~ 112 (681)
T PLN02705 85 KERTKLRERHRRAITSRMLAGLRQYGNF 112 (681)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444579999999889999999987543
No 29
>PRK02724 hypothetical protein; Provisional
Probab=20.63 E-value=1.1e+02 Score=25.87 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHH
Q psy2365 190 NNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 227 (285)
Q Consensus 190 N~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~ 227 (285)
++|-+.||..|-.-+==.+-.+|++|..|++-|+.=|+
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe 81 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQE 81 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46888999988765433466789999999999999998
Done!