Query psy2365
Match_columns 285
No_of_seqs 199 out of 774
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:06:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 3E-23 1E-27 152.9 7.7 58 174-231 2-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 1.5E-22 5E-27 152.8 7.9 60 171-231 9-68 (68)
3 4aya_A DNA-binding protein inh 99.8 2.6E-20 8.9E-25 149.5 6.5 63 172-234 23-85 (97)
4 2lfh_A DNA-binding protein inh 99.8 8.5E-21 2.9E-25 143.7 2.0 52 176-227 16-67 (68)
5 3u5v_A Protein MAX, transcript 99.7 1.4E-17 4.8E-22 127.9 5.1 65 172-236 3-68 (76)
6 1hlo_A Protein (transcription 99.6 3.5E-15 1.2E-19 114.2 6.9 61 171-232 9-69 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 99.6 5.9E-15 2E-19 115.6 7.6 61 171-231 3-63 (88)
8 1nkp_B MAX protein, MYC proto- 99.5 1.7E-14 5.8E-19 110.8 6.5 57 174-231 2-58 (83)
9 1nlw_A MAD protein, MAX dimeri 99.5 6.8E-14 2.3E-18 108.1 7.3 57 175-231 2-58 (80)
10 1an4_A Protein (upstream stimu 99.3 5.9E-13 2E-17 97.9 3.6 56 173-228 4-62 (65)
11 1am9_A Srebp-1A, protein (ster 99.3 2.9E-12 9.8E-17 98.9 6.9 61 172-234 4-64 (82)
12 4h10_B Circadian locomoter out 99.2 3.5E-11 1.2E-15 91.6 7.1 57 172-230 6-62 (71)
13 1a0a_A BHLH, protein (phosphat 99.2 7.3E-12 2.5E-16 92.8 2.2 56 174-229 2-61 (63)
14 4h10_A ARYL hydrocarbon recept 99.1 4.4E-11 1.5E-15 91.2 4.4 58 171-228 6-64 (73)
15 4ati_A MITF, microphthalmia-as 99.1 1.6E-10 5.5E-15 94.7 7.1 60 172-231 25-85 (118)
16 4f3l_A Mclock, circadian locom 98.6 5.3E-08 1.8E-12 89.9 6.3 57 172-230 10-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.2 6.9E-07 2.4E-11 83.7 4.6 56 172-227 11-67 (387)
18 4ath_A MITF, microphthalmia-as 97.2 0.00062 2.1E-08 53.3 6.3 44 187-230 5-49 (83)
19 3muj_A Transcription factor CO 92.0 0.22 7.5E-06 42.2 5.4 40 187-226 94-134 (138)
20 3mlp_A Transcription factor CO 62.5 1.3 4.3E-05 42.9 -0.7 40 187-226 320-360 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 41.5 19 0.00066 22.4 2.5 20 208-227 1-20 (26)
22 1iur_A KIAA0730 protein; DNAJ 30.2 45 0.0015 25.1 3.5 22 184-205 58-79 (88)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.88 E-value=3e-23 Score=152.95 Aligned_cols=58 Identities=47% Similarity=0.679 Sum_probs=56.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 174 RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
||.+||+|||+||++||.||+.||.+||..+.++|||||+||++||+||.+|+++|++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999975
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.87 E-value=1.5e-22 Score=152.79 Aligned_cols=60 Identities=35% Similarity=0.568 Sum_probs=56.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
..++|.+||+|||+||+.||+||+.||++||..| ++|||||+||+.||+||.+|+++|++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999866 79999999999999999999999964
No 3
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=149.55 Aligned_cols=63 Identities=25% Similarity=0.426 Sum_probs=52.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCC
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 234 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 234 (285)
+.|++.+..+||.||+.||+||+.||++||+.|.++|||||||||+||+||.+|+++|++...
T Consensus 23 i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 23 ISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555667789999999999999999999999999999999999999999999999998776
No 4
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=8.5e-21 Score=143.74 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHH
Q psy2365 176 NTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 227 (285)
Q Consensus 176 ~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~ 227 (285)
..||+|||+||+.||+||+.||++||..|.++|||||||||+||+||..||.
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999999999999999999985
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.69 E-value=1.4e-17 Score=127.87 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=53.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-CCCCCCcchHHhhHHHHHHHHHHHHHHhhCCCCC
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPN-VPSDTKLSKIKTLRLATSYISYLMKILETDDIIS 236 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~-~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~ 236 (285)
.+||.++|++||+|+.+||++|+.||++||. .+.++++||++||+.||+||..|++.|++...++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~ 68 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNP 68 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999994 5666667999999999999999999999877654
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=3.5e-15 Score=114.19 Aligned_cols=61 Identities=31% Similarity=0.530 Sum_probs=55.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhC
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETD 232 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 232 (285)
...+|..||.+||+|+..||.+|+.||.+||..+ +.|+||++||+.||+||..|+..++..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999766 468999999999999999999877654
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=5.9e-15 Score=115.60 Aligned_cols=61 Identities=30% Similarity=0.430 Sum_probs=56.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
...+|..||++||+|+..||.+|+.||.+||..+.+.|+||+.||+.||+||..|+.....
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999988889999999999999999999976543
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.51 E-value=1.7e-14 Score=110.75 Aligned_cols=57 Identities=33% Similarity=0.578 Sum_probs=52.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 174 RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
+|..||.+||+|+..||.+|+.||.+||..+ +.|+||++||+.||+||..|+..+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999765 57899999999999999999976544
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=6.8e-14 Score=108.06 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=53.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 175 RNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 175 R~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
|..+|+.||+|+..||.+|+.||..||..+.+.|+||+.||+.|++||..|+.-...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~ 58 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRK 58 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999988899999999999999999999876543
No 10
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.32 E-value=5.9e-13 Score=97.89 Aligned_cols=56 Identities=38% Similarity=0.453 Sum_probs=50.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCcchHHhhHHHHHHHHHHHHH
Q psy2365 173 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSD---TKLSKIKTLRLATSYISYLMKI 228 (285)
Q Consensus 173 ~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~---kKLSKietLr~Ai~YI~~Lq~l 228 (285)
.+|..||..||+|+..||.+|..|+..||..... .|++|+.||+.||+||..|+.-
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999976543 4899999999999999999863
No 11
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.31 E-value=2.9e-12 Score=98.86 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=54.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCC
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 234 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 234 (285)
..+|..||..||+|+..||++|..||..||. .+.|++|+.||+.||+||..|+..+.....
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999996 357999999999999999999987765443
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.19 E-value=3.5e-11 Score=91.55 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=52.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHh
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 230 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 230 (285)
..+|..+|..||+|+..||..|..|+..||. ...|+.|..||+.||+||..|+..+.
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999999999999994 35699999999999999999998764
No 13
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.16 E-value=7.3e-12 Score=92.75 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=49.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCC----CCCCcchHHhhHHHHHHHHHHHHHH
Q psy2365 174 RRNTANKKERRRTQSINNAFSDLRECIPNVP----SDTKLSKIKTLRLATSYISYLMKIL 229 (285)
Q Consensus 174 RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p----~~kKLSKietLr~Ai~YI~~Lq~lL 229 (285)
||..|+.-||.|+..||.+|+.|+..||... ...|+||.+||.+||+||..|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999532 2579999999999999999998754
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.11 E-value=4.4e-11 Score=91.19 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=51.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-CCCCCCcchHHhhHHHHHHHHHHHHH
Q psy2365 171 VVKRRNTANKKERRRTQSINNAFSDLRECIPN-VPSDTKLSKIKTLRLATSYISYLMKI 228 (285)
Q Consensus 171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~-~p~~kKLSKietLr~Ai~YI~~Lq~l 228 (285)
...+|..++..||+|+..||.+|+.|+..||. .....|+.|+.||+.||+||..|+..
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999995 23457999999999999999999754
No 15
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.08 E-value=1.6e-10 Score=94.75 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=47.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVP-SDTKLSKIKTLRLATSYISYLMKILET 231 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~lL~~ 231 (285)
..+|..||.-||+|+..||+.|..|+..||... .+.|++|+.||..||+||..|+..+..
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~ 85 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR 85 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999753 367999999999999999999876543
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.58 E-value=5.3e-08 Score=89.95 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=44.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHh
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 230 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 230 (285)
..+|..+|..||+|+.+||..|.+|+..|| ....||.|+.||++||.||..|+.+-.
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 457888999999999999999999999999 346799999999999999999987643
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.23 E-value=6.9e-07 Score=83.69 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=49.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCcchHHhhHHHHHHHHHHHH
Q psy2365 172 VKRRNTANKKERRRTQSINNAFSDLRECIPNV-PSDTKLSKIKTLRLATSYISYLMK 227 (285)
Q Consensus 172 ~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~-p~~kKLSKietLr~Ai~YI~~Lq~ 227 (285)
..+|..+|.-||+|+.+||..|.+|+..||.. ....||.|..||++||+||+.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 45788899999999999999999999999942 235799999999999999999873
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.23 E-value=0.00062 Score=53.27 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhCCC-CCCCCCcchHHhhHHHHHHHHHHHHHHh
Q psy2365 187 QSINNAFSDLRECIPN-VPSDTKLSKIKTLRLATSYISYLMKILE 230 (285)
Q Consensus 187 ~~lN~AF~~LR~~lP~-~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 230 (285)
-.||..+.+|...||. ...+-|..|-.||+.|++||..|++-..
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999995 3456799999999999999999987543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=92.00 E-value=0.22 Score=42.15 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhCCCCCC-CCCcchHHhhHHHHHHHHHHH
Q psy2365 187 QSINNAFSDLRECIPNVPS-DTKLSKIKTLRLATSYISYLM 226 (285)
Q Consensus 187 ~~lN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq 226 (285)
-.|+-+|++|.+.||-.|. -.||.|-.||+.|.++++.|-
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 4688899999999997664 369999999999999998874
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=62.54 E-value=1.3 Score=42.91 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCCCC-CCCcchHHhhHHHHHHHHHHH
Q psy2365 187 QSINNAFSDLRECIPNVPS-DTKLSKIKTLRLATSYISYLM 226 (285)
Q Consensus 187 ~~lN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq 226 (285)
-.|.-+|++|.+.||-.|. -.+|+|-.||+.|.+.++.|-
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy 360 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALY 360 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHT
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhc
Confidence 4677889999999997663 369999999999999988873
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=41.53 E-value=19 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.3
Q ss_pred CcchHHhhHHHHHHHHHHHH
Q psy2365 208 KLSKIKTLRLATSYISYLMK 227 (285)
Q Consensus 208 KLSKietLr~Ai~YI~~Lq~ 227 (285)
+|.+|++|-.|.+||....+
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46789999999999998775
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=30.18 E-value=45 Score=25.12 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCC
Q psy2365 184 RRTQSINNAFSDLRECIPNVPS 205 (285)
Q Consensus 184 ~R~~~lN~AF~~LR~~lP~~p~ 205 (285)
.+.+.||+|++.|.+..+-.+.
T Consensus 58 ~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 58 EVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 4799999999999998875443
Done!