RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2365
         (285 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 68

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 170 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229
               RR  A  +ERRR   +N AF  L+    + P + +L K++ LR A  YI  L  +L
Sbjct: 8   TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66

Query: 230 E 230
            
Sbjct: 67  R 67


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 64.9 bits (158), Expect = 2e-14
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 170 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229
            +  +R T N  ER+R   +  +F  LR+ IP + ++ K  K+  L+ AT+YI  +    
Sbjct: 2   HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61

Query: 230 ET 231
           + 
Sbjct: 62  QK 63


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 63.4 bits (154), Expect = 7e-14
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 175 RNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 230
           R+T N+ E+ R   +  +   L+  +P  P  ++ + +  L  A  +I  L     
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 173 KRRNTANKKERRRTQSINNAFSDLRECIPNV---PSDTKLSKIKTLRLATSYISYLMK 227
           KRR   N+ ERRR   INN    L + IP+     + +  SK   L  A+ YI  L +
Sbjct: 4   KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 60.3 bits (146), Expect = 6e-13
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVP----SDTKLSKIKTLRLATSYISYLMKIL 229
           +R +    E+ R   +  A  +L   IP            SK  T+  A  YI +L +  
Sbjct: 2   KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61

Query: 230 ET 231
            T
Sbjct: 62  ST 63


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231
           +R   N  ER+R   I ++F  LR+ +P++  + K S+ + L  AT YI Y+ +   T
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHT 58


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 173 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 230
           ++R   N  E+R   SIN+   +L++ +    ++ KL+K   LR A  YI +L    +
Sbjct: 5   EKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQ 60


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 188 SINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 230
           SIN+   +L++ +    +D K+ K   LR A  YI YL ++  
Sbjct: 3   SINDKIIELKDLVMG--TDAKMHKSGVLRKAIDYIKYLQQVNH 43


>d2zjru1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 72

 Score = 26.2 bits (58), Expect = 1.2
 Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 3/32 (9%)

Query: 121 YPNVKHI---VEPSYVNLDTATKTLRTVSKAG 149
             N+             +  +   LRT+SK  
Sbjct: 36  RANLHKKAIRENGQVKTVWLSANALRTLSKGP 67


>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 133

 Score = 25.0 bits (54), Expect = 7.4
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 179 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLAT--SYISYLMKILETDDIIS 236
            + E++R   + N   DLR     +       K+K   L      +  L + L +     
Sbjct: 5   TEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFV 64

Query: 237 IDDFK-ADL 244
            D     D 
Sbjct: 65  GDKLTFVDF 73


>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 133

 Score = 24.6 bits (53), Expect = 9.7
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 179 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLAT--SYISYLMKILETDDIIS 236
           ++KE+ R   + N F D R  +  +  D    K+K   L      +    + L       
Sbjct: 5   SEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFL 64

Query: 237 IDDF 240
            D  
Sbjct: 65  GDKI 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,041,473
Number of extensions: 46681
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 18
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.3 bits)