BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy237
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
 pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
 pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
 pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
 pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Vinyl Gaba
 pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Vinyl Gaba
 pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Vinyl Gaba
 pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Vinyl Gaba
 pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Ethynyl Gaba
 pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Ethynyl Gaba
 pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Ethynyl Gaba
 pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
           Gamma-Ethynyl Gaba
          Length = 472

 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 69/105 (65%)

Query: 53  PQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFGNYLVDVDGNHILDVYTQISSV 112
           P + TEVPGP+++                 F +Y++S GNYLVDVDGN +LD+Y+QISS+
Sbjct: 16  PLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSI 75

Query: 113 PLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
           P+GY+HPAL+K+   P  V TF+NRPALG+ P  ++ + L   LL
Sbjct: 76  PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLL 120



 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 47/59 (79%)

Query: 156 LLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV 214
           +++ + +V  F +Y++S GNYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+   P  V
Sbjct: 36  IIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV 94


>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
          Length = 449

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 162 SVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 205
            + + +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 32  GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76



 Score = 37.0 bits (84), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 84  VDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 122
           +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76


>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
          Length = 449

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 162 SVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 205
            + + +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 32  GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76



 Score = 36.6 bits (83), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 84  VDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 122
           +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76


>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
           Internal Aldimine Form
 pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
           Form
 pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
           Internal Aldimine Form With Bound Substrate 2-
           Ketoglutarate
 pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
           Aminotransferase (Rv3290c) Complexed To An Inhibitor
 pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
           Aldimine Form
          Length = 449

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 162 SVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 205
            + + +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 32  GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76



 Score = 36.6 bits (83), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 84  VDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 122
           +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76


>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
           Tuberculosis
          Length = 449

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 162 SVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 205
            + + +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 32  GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76



 Score = 36.6 bits (83), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 84  VDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL 122
           +D  +S G+YLVD + G   LD++T ++S  LG N PAL+
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALV 76


>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
          Length = 451

 Score = 34.7 bits (78), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 48  SEPSHPQ----LVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQ-KSFGNYLVDVDGNHI 102
           S  SHP+    L T +PGP+++A                   Y  ++ G  + DVDGN +
Sbjct: 4   SMVSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRL 63

Query: 103 LDVYTQISSVPLGYNHPALLK 123
           +D+ + I+   +G + P +++
Sbjct: 64  IDLGSGIAVTTVGNSAPKVVE 84


>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
           Aminotransferase From Yersinia Pestis Co92
          Length = 429

 Score = 34.3 bits (77), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 161 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
           G + LF+  +++ G YL DVDG   +D         LG+NHPA+
Sbjct: 33  GGIPLFI--ERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAI 74



 Score = 31.2 bits (69), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 87  QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
           +++ G YL DVDG   +D         LG+NHPA+
Sbjct: 40  ERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAI 74


>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
           Rocd From Bacillus Anthracis
 pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
           Rocd From Bacillus Anthracis
          Length = 392

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
           K+ G ++ D +GN  +D+ +  S+V  G+ HP ++    D A   T  +R
Sbjct: 24  KAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR 73



 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           K+ G ++ D +GN  +D+ +  S+V  G+ HP ++    D A
Sbjct: 24  KAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQA 65


>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
          Length = 431

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 87  QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 129
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 28  ERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYA 70



 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 28  ERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYA 70


>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
           Thermotoga Maritima
          Length = 385

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA-----TVKTFVNRPAL 140
           G+++ D  GN  LD  + I+   LG++HP L++   D A         F NRP +
Sbjct: 19  GSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQM 73



 Score = 32.3 bits (72), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPAT--VKCSD 218
           G+++ D  GN  LD  + I+   LG++HP L++   D A   + CS+
Sbjct: 19  GSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSN 65


>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
           Aminotransferase From Salmonella Typhimurium: Studies On
           Substrate Specificity And Inhibitor Binding
 pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
           Aminotransferase From Salmonella Typhimurium: Studies On
           Substrate Specificity And Inhibitor Binding
 pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
           Aminotransferase From Salmonella Typhimurium: Studies On
           Substrate Specificity And Inhibitor Binding
 pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
           Aminotransferase From Salmonella Typhimurium: Studies On
           Substrate Specificity And Inhibitor Binding
          Length = 420

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA-----TVKTFVNRPALGV 142
           K  G+ + D  G   +D    I+   LG+ HPAL++           T   F N PAL +
Sbjct: 45  KGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRL 104

Query: 143 FPSGDWPQLLENVLLKQSGS 162
                     E VL   SG+
Sbjct: 105 GRKLIDATFAERVLFMNSGT 124


>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
           2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
           1.40 A Resolution
 pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
           2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
           1.40 A Resolution
          Length = 397

 Score = 32.3 bits (72), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPAT--VKCSD 218
           G+++ D  GN  LD  + I+   LG++HP L++   D A   + CS+
Sbjct: 31  GSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSN 77



 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA-----TVKTFVNRP 138
           G+++ D  GN  LD  + I+   LG++HP L++   D A         F NRP
Sbjct: 31  GSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRP 83


>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
           Y55a G320f
 pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
           Y55a G320f
 pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
           Y55a G320f
          Length = 439

 Score = 32.0 bits (71), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
           V  ++  G YL DV+G    D  + IS+V  G+ HP ++          T  +R
Sbjct: 60  VALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR 113



 Score = 31.2 bits (69), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           V  ++  G YL DV+G    D  + IS+V  G+ HP ++
Sbjct: 60  VALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98


>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
 pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
 pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
          Length = 439

 Score = 32.0 bits (71), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
           V  ++  G YL DV+G    D  + IS+V  G+ HP ++          T  +R
Sbjct: 60  VALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR 113



 Score = 31.2 bits (69), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           V  ++  G YL DV+G    D  + IS+V  G+ HP ++
Sbjct: 60  VALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98


>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
           1- Aminocyclopentanephosphonate
 pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
           1- Amino-1-Methylpropanephosphonate
 pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
           1- Amino-1-Phenylethanephosphonate
 pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
           S- 1-Aminoethanephosphonate
 pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
           Complex With Pyridoxamine 5-phosphate
 pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
           With Calcium Ion
 pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
           With Cesium Ion
 pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
           Active Site And Alkali Metal Binding Sites
 pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
           Active Site And Alkali Metal Binding Sites
          Length = 433

 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 87  QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 129
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 30  ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA 72



 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 30  ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA 72


>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
           Site Structure Of Dialkylglycine Decarboxylase
 pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
           Site Structure Of Dialkylglycine Decarboxylase
          Length = 432

 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 87  QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 129
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 29  ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA 71



 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 29  ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA 71


>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
           Decarboxylase With 5pa
 pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
           Decarboxylase With Dcs
 pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
           Decarboxylase With Lcs
 pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
           Decarboxylase With Nma
          Length = 433

 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 87  QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 129
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 30  ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA 72



 Score = 31.6 bits (70), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           +++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A
Sbjct: 30  ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA 72


>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
           (Gabt) From Mycobacterium Abscessus
 pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
           (Gabt) From Mycobacterium Abscessus
 pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
           (Gabt) From Mycobacterium Abscessus
 pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
           (Gabt) From Mycobacterium Abscessus
          Length = 453

 Score = 31.2 bits (69), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 55  LVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQ-KSFGNYLVDVDGNHILDVYTQISSVP 113
           +VT +PGP++ A                   Y   + G  +VD DGN  +D+   I+   
Sbjct: 18  IVTPLPGPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTT 77

Query: 114 LGYNHP 119
           +G +HP
Sbjct: 78  VGASHP 83



 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHP 202
           G  +VD DGN  +D+   I+   +G +HP
Sbjct: 55  GGVIVDADGNSFIDLGAGIAVTTVGASHP 83


>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
          Length = 453

 Score = 31.2 bits (69), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 33  NPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXF-VDYQKSFG 91
            PG  ++ A+  A  +     +LVT +PGP ++                   V    + G
Sbjct: 1   GPGSMVTIAE-IAGRTLTQERRLVTAIPGPISQELQARKQSAVAAGVGVTLPVYVVAAGG 59

Query: 92  NYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
             L D DGN ++D  + I+   +G + PA++
Sbjct: 60  GVLADADGNQLIDFGSGIAVTTVGNSAPAVV 90


>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
           From Mycobacterium Marinum Covalently Bound To Pyridoxal
           Phosphate
          Length = 467

 Score = 31.2 bits (69), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 55  LVTEVPGPQTKAXXXXXXXXXXXXXXXXF-VDYQKSFGNYLVDVDGNHILDVYTQISSVP 113
           LVTE+PGP +                    V   ++ G  + D DGN ++D+ + I+   
Sbjct: 32  LVTEIPGPASLELNKRRAAAVSGGVGVTLPVFVVRAGGGIVEDADGNRLIDLGSGIAVTT 91

Query: 114 LGYNHPALLKIFDD 127
           +G + P ++    D
Sbjct: 92  IGNSAPRVVDAVRD 105


>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
           2,1-Aminomutase From Aeropyrum Pernix
 pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
           Aminomutase From Aeropyrum Pernix
 pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
           Aminomutase From Aeropyrum Pernix, Hexagonal Form
 pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
           Aminomutase From Aeropyrum Pernix, Hexagonal Form
 pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
           Aminomutase From Aeropyrum Pernix, Hexagonal Form
          Length = 434

 Score = 30.8 bits (68), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 87  QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 127
           ++  G YL  VDG  I+D+      + LG+ HP +L+  ++
Sbjct: 43  KRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEE 83



 Score = 30.8 bits (68), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 210
           ++  G YL  VDG  I+D+      + LG+ HP +L+  ++
Sbjct: 43  KRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEE 83


>pdb|3RST|A Chain A, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|B Chain B, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|C Chain C, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|D Chain D, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|E Chain E, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|F Chain F, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|G Chain G, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
 pdb|3RST|H Chain H, Crystal Structure Of Bacillus Subtilis Signal Peptide
           Peptidase A
          Length = 240

 Score = 30.4 bits (67), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 115 GYNHPALLKIFD---DPATVKTFV---NRPALGVFPSGDWPQLLENV 155
           GYNH   LK  +   D  TVK  V   N P  GV+ S +  + LE +
Sbjct: 28  GYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEI 74


>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
           Sulfolobus Tokodaii Strain7
          Length = 419

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKI 207
           L +D+ +  G ++ DVDGN  LD  + I    LG+ +HP ++KI
Sbjct: 26  LVIDHGE--GVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKI 67



 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKI 124
           G ++ DVDGN  LD  + I    LG+ +HP ++KI
Sbjct: 33  GVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKI 67


>pdb|1OAT|A Chain A, Ornithine Aminotransferase
 pdb|1OAT|B Chain B, Ornithine Aminotransferase
 pdb|1OAT|C Chain C, Ornithine Aminotransferase
 pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
           5-Fluoromethylornithine
 pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
           5-Fluoromethylornithine
 pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
           5-Fluoromethylornithine
          Length = 439

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
           V  ++  G YL DV+G    D  +  S+V  G+ HP ++          T  +R
Sbjct: 60  VALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR 113



 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           V  ++  G YL DV+G    D  +  S+V  G+ HP ++
Sbjct: 60  VALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIV 98


>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
 pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
 pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
 pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
           Neurotoxin Gabaculine
 pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
           Neurotoxin Gabaculine
 pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
           Neurotoxin Gabaculine
          Length = 402

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
           V  ++  G YL DV+G    D  +  S+V  G+ HP ++          T  +R
Sbjct: 23  VALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR 76



 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           V  ++  G YL DV+G    D  +  S+V  G+ HP ++
Sbjct: 23  VALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIV 61


>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
 pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
 pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
 pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
 pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
 pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
          Length = 433

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF 143
           V  +++ G ++ DV+     D  +  SSV  G+ HP +L    + A   T  +R    V 
Sbjct: 49  VVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV- 107

Query: 144 PSGDWPQLLENVL 156
           P G   + L N+L
Sbjct: 108 PLGICERYLTNLL 120


>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
           2,1-Aminomutase From Thermus Thermophilus Hb8
          Length = 424

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
           +  G Y+ D DGN  LD       + LG+ HP +L
Sbjct: 40  RGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVL 74



 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           +  G Y+ D DGN  LD       + LG+ HP +L
Sbjct: 40  RGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVL 74


>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
           Fluvialis Js17
 pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
           Fluvialis Js17
          Length = 478

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
           G Y+VDV+G   LD  + + ++  G++H  L+
Sbjct: 52  GPYIVDVNGRRYLDANSGLWNMVAGFDHKGLI 83



 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           G Y+VDV+G   LD  + + ++  G++H  L+
Sbjct: 52  GPYIVDVNGRRYLDANSGLWNMVAGFDHKGLI 83


>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
           Escherichia Coli
          Length = 206

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 86  YQKSFGNYLVDVDGNHILDVYTQISSVPLG 115
           Y    GN +VD+D N +L  ++ ++ +PL 
Sbjct: 10  YIFDLGNVIVDIDFNRVLGAWSDLTRIPLA 39



 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 169 YQKSFGNYLVDVDGNHILDVYTQISSVPLG 198
           Y    GN +VD+D N +L  ++ ++ +PL 
Sbjct: 10  YIFDLGNVIVDIDFNRVLGAWSDLTRIPLA 39


>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
           Vibrio Fluvialis
 pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
           Vibrio Fluvialis
 pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
           Vibrio Fluvialis
 pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
           Vibrio Fluvialis
          Length = 473

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
           G Y+VDV+G   LD  + + ++  G++H  L+
Sbjct: 58  GPYIVDVNGRRYLDANSGLFNMVAGFDHKGLI 89



 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           G Y+VDV+G   LD  + + ++  G++H  L+
Sbjct: 58  GPYIVDVNGRRYLDANSGLFNMVAGFDHKGLI 89


>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
           Denitrificans
 pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
           Denitrificans
 pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
           Denitrificans
 pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
           Denitrificans
          Length = 465

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           G Y+VDV G   LD  + + ++  G++H  L++
Sbjct: 50  GPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIE 82



 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
           G Y+VDV G   LD  + + ++  G++H  L++
Sbjct: 50  GPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIE 82


>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
           Semialdehyde Aminotransferase
 pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
           Semialdehyde Aminotransferase
          Length = 434

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 129
           +  ++  G Y  DVDGN  +D       +  G+ HP + K     A
Sbjct: 39  IAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84



 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           +  ++  G Y  DVDGN  +D       +  G+ HP + K     A
Sbjct: 39  IAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84


>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
           Vibrio Fluvialis
 pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
           Vibrio Fluvialis
 pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
           Vibrio Fluvialis
 pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
           Vibrio Fluvialis
          Length = 473

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
           G Y+VDV+G   LD  + + +   G++H  L+
Sbjct: 58  GPYIVDVNGRRYLDANSGLWNXVAGFDHKGLI 89



 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
           G Y+VDV+G   LD  + + +   G++H  L+
Sbjct: 58  GPYIVDVNGRRYLDANSGLWNXVAGFDHKGLI 89


>pdb|3QQZ|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Yjik
           Protein From Escherichia Coli Cft073
          Length = 255

 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 85  DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV 131
           ++  SF NY   +DG  I  +   ISS+        L    + PA +
Sbjct: 5   NHAASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAI 51



 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 168 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV 214
           ++  SF NY   +DG  I  +   ISS+        L    + PA +
Sbjct: 5   NHAASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAI 51


>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
           (D-Phgat) From Pseudomonas Strutzeri St-201
          Length = 453

 Score = 27.3 bits (59), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHP 119
           G +  DVDGN  LD +    ++ LG+ HP
Sbjct: 48  GVHKTDVDGNVYLDFFGGHGALVLGHGHP 76



 Score = 27.3 bits (59), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHP 202
           G +  DVDGN  LD +    ++ LG+ HP
Sbjct: 48  GVHKTDVDGNVYLDFFGGHGALVLGHGHP 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,701,375
Number of Sequences: 62578
Number of extensions: 314407
Number of successful extensions: 650
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 83
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)