RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy237
(236 letters)
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 143 bits (362), Expect = 3e-40
Identities = 58/110 (52%), Positives = 82/110 (74%)
Query: 49 EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
EP+ P + TE+PGP++KA ++L+++ + +V DY+KS GNYLVDVDGN +LD+Y+Q
Sbjct: 7 EPTGPLMKTEIPGPKSKAAMKQLNEVFDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQ 66
Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
ISS+P+GYN+PALLK P T +NRPALG FPS DW ++L+ +LK
Sbjct: 67 ISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILK 116
Score = 84.1 bits (208), Expect = 9e-19
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP 211
+V DY+KS GNYLVDVDGN +LD+Y+QISS+P+GYN+PALLK P
Sbjct: 37 AVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP 86
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 73.1 bits (180), Expect = 3e-15
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 85 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP 144
K+ G +L DVDG LD + I+ V LG+ HP +++ + A T + A P
Sbjct: 1 FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEP 60
Query: 145 SGDW--------PQLLENVLLKQSGSVS 164
+ P L+ V SGS +
Sbjct: 61 ALQLAEKLAQLTPGGLDRVFFMNSGSEA 88
Score = 65.0 bits (159), Expect = 2e-12
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 168 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTF 227
K+ G +L DVDG LD + I+ V LG+ HP +++ + A DK +H
Sbjct: 1 FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQA------DKLTHTSFR 54
Query: 228 ARTEPPDTQ 236
A T P Q
Sbjct: 55 AFTTEPALQ 63
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 68.8 bits (169), Expect = 2e-13
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 47 LSEPSHPQLVTEVPGPQTKAL-KQKLSQLQQSGSVSLF-VDYQKSFGNYLVDVDGNHILD 104
S P P +VTE PGP+ L +++ L +S F + ++ G YL DVDGN LD
Sbjct: 1 QSLPEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLD 60
Query: 105 VYTQISSVPLGYNHPALLK 123
+ I+ + LG+NHP +++
Sbjct: 61 FLSGIAVLNLGHNHPRVVE 79
Score = 57.6 bits (140), Expect = 9e-10
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 133 TFVNRPALGVFPSG----DWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDV 188
+ P + G + + E L + G + ++ G YL DVDGN LD
Sbjct: 2 SLPEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDF 61
Query: 189 YTQISSVPLGYNHPALLK 206
+ I+ + LG+NHP +++
Sbjct: 62 LSGIAVLNLGHNHPRVVE 79
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 55.3 bits (134), Expect = 6e-09
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFART 230
++ G YL DVDGN LD + I + LG+NHP +++ + K +H
Sbjct: 24 RAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL------AKLTHFSLGFFY 77
Query: 231 EPP 233
P
Sbjct: 78 NEP 80
Score = 54.9 bits (133), Expect = 7e-09
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGD 147
++ G YL DVDGN LD + I + LG+NHP +++ + T + F +
Sbjct: 24 RAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLG----FFYNE 79
Query: 148 WPQLLENVLLKQSG 161
L +LL +
Sbjct: 80 PAVELAELLLALTP 93
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 53.0 bits (128), Expect = 3e-08
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 82 LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALLKIFDDPA----TVKTFVN 136
L +D ++S G+YLVD G LD++T +S LG NHPAL DDP + +N
Sbjct: 26 LVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALA---DDPEFRAELGRAALN 82
Query: 137 RPA 139
+P+
Sbjct: 83 KPS 85
Score = 52.3 bits (126), Expect = 5e-08
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 165 LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
L +D ++S G+YLVD G LD++T +S LG NHPAL DDP
Sbjct: 26 LVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALA---DDPE 71
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 51.8 bits (125), Expect = 9e-08
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 48 SEPSHPQLVTEVPGPQTKAL-KQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVY 106
P P++V E+PGP+ + + ++ L QS + ++ G ++ DVDGN LD
Sbjct: 1 DMPRRPRIVVELPGPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFN 60
Query: 107 TQISSVPLGYNHPALLK 123
I+ +G+ HP ++K
Sbjct: 61 AGIAVTNVGHAHPKVVK 77
Score = 36.8 bits (86), Expect = 0.007
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 173 FGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G ++ DVDGN LD I+ +G+ HP ++K
Sbjct: 44 EGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVK 77
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 48.8 bits (116), Expect = 8e-07
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 52 HPQLVTEVPGPQTKALKQKLSQLQQSG-SVSLF-VDYQKSFGNYLVDVDGNHILDVYTQI 109
+P++V + PGP+ K L ++ ++ G V LF + ++ FG + DVDGN +D
Sbjct: 3 YPKIVVKPPGPKAKELIEREKRVLSPGIGVKLFPLVPKRGFGALIEDVDGNVFIDFLAGA 62
Query: 110 SSVPLGYNHPALLK 123
++ GY+HP L+K
Sbjct: 63 AAASTGYSHPKLVK 76
Score = 35.3 bits (81), Expect = 0.024
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 138 PALGVFPSGDWPQLL---ENVLLKQSGSVSLF-VDYQKSFGNYLVDVDGNHILDVYTQIS 193
P + V P G + L E +L V LF + ++ FG + DVDGN +D +
Sbjct: 4 PKIVVKPPGPKAKELIEREKRVLSPGIGVKLFPLVPKRGFGALIEDVDGNVFIDFLAGAA 63
Query: 194 SVPLGYNHPALLK 206
+ GY+HP L+K
Sbjct: 64 AASTGYSHPKLVK 76
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 44.6 bits (106), Expect = 2e-05
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 50 PSHPQLVTEVPGPQTKALKQKLSQLQQSG-SVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
P +LVTE+PGP+++AL ++ + +G +L V ++ G + DVDGN ++D+ +
Sbjct: 5 PQSRRLVTEIPGPKSQALAERRAAAVAAGVGSTLPVYVARAGGGIVEDVDGNRLIDLGSG 64
Query: 109 ISSVPLGYNHPALLK 123
I+ +G + P +++
Sbjct: 65 IAVTSVGNSAPRVVE 79
Score = 27.7 bits (62), Expect = 6.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G + DVDGN ++D+ + I+ +G + P +++
Sbjct: 47 GGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVE 79
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 82 LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPAL 121
L +D +S G+ LVD DG LD+++ +S+ LG NHPAL
Sbjct: 19 LVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPAL 59
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 165 LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPAL 204
L +D +S G+ LVD DG LD+++ +S+ LG NHPAL
Sbjct: 19 LVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPAL 59
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 39.0 bits (91), Expect = 0.001
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 127
K+ G ++ DV+GN LD ++ LG+NHP +L+ D
Sbjct: 44 IAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQD 85
Score = 39.0 bits (91), Expect = 0.001
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 210
K+ G ++ DV+GN LD ++ LG+NHP +L+ D
Sbjct: 44 IAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQD 85
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 37.9 bits (89), Expect = 0.003
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHI 224
L V + G Y+ D G LD I+ LG+ HPAL++ +K +K H+
Sbjct: 24 LPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVE------ALKEQAEKLWHV 77
Query: 225 P 225
Sbjct: 78 S 78
Score = 37.5 bits (88), Expect = 0.004
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
L V + G Y+ D G LD I+ LG+ HPAL++
Sbjct: 24 LPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVE 65
>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane
bound guanylyl cyclases. Ligand-binding domain of
membrane bound guanylyl cyclases (GCs), which are known
to be activated by sperm-activating peptides (SAPs),
such as speract or resact. These ligand peptides are
released by a range of invertebrates to stimulate the
metabolism and motility of spermatozoa and are also
potent chemoattractants. These GCs contain a single
transmembrane segment, an extracellular ligand binding
domain, and intracellular protein kinase-like and
cyclase catalytic domains. GCs of insect and nematodes,
which exhibit high sequence similarity to the speract
receptor are also included in this model.
Length = 404
Score = 36.5 bits (85), Expect = 0.009
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 215 KCSD----DKTSHIPTFARTEPPDTQ 236
KC + DK S PTFART PP Q
Sbjct: 98 KCDEEPVSDK-SKYPTFARTVPPSIQ 122
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 35.2 bits (82), Expect = 0.026
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 36/96 (37%)
Query: 91 GNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK------------IFDDPATVKTFV 135
G YL D DG +D ISS G+NHP + +F
Sbjct: 22 GVYLYDEDGREYIDG---ISSWWVNIHGHNHPEINAAIKEQLDKLEHVMFGG------LT 72
Query: 136 NRPA-------LGVFPSGDWPQLLENVLLKQSGSVS 164
+ PA + + P G LE V SGSV+
Sbjct: 73 HEPAIELAERLVEITPEG-----LEKVFFSDSGSVA 103
Score = 34.4 bits (80), Expect = 0.039
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 174 GNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
G YL D DG +D ISS G+NHP +
Sbjct: 22 GVYLYDEDGREYIDG---ISSWWVNIHGHNHPEINA 54
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 34.9 bits (80), Expect = 0.028
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 127
+ K+ G ++ DV+G LD ++ LG+NHP + + D
Sbjct: 25 FAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILD 66
Score = 34.9 bits (80), Expect = 0.028
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 210
+ K+ G ++ DV+G LD ++ LG+NHP + + D
Sbjct: 25 FAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILD 66
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 35.0 bits (81), Expect = 0.029
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
G+Y+ D +G LD +Q+ + +G+ HP ++
Sbjct: 44 GSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVV 75
Score = 35.0 bits (81), Expect = 0.029
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
G+Y+ D +G LD +Q+ + +G+ HP ++
Sbjct: 44 GSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVV 75
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 34.4 bits (79), Expect = 0.045
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 57 TEVPGPQTKALKQKLSQLQQSG---SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVP 113
++PGP+ +L ++ + G + F + G + DVDGN +D I ++
Sbjct: 10 EQIPGPKAASLLERRQNIVPKGVSNGIPTFAQ--SANGALVTDVDGNQYIDFAGAIGTIN 67
Query: 114 LGYNHPALLK 123
+G++HP + +
Sbjct: 68 VGHSHPKVKE 77
Score = 29.8 bits (67), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
Q + G + DVDGN +D I ++ +G++HP + +
Sbjct: 41 QSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKE 77
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 34.0 bits (78), Expect = 0.053
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
G ++ D DGN LD + S+V G+ HP +L + A T +R
Sbjct: 32 GVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSR 78
Score = 31.3 bits (71), Expect = 0.39
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G ++ D DGN LD + S+V G+ HP +L
Sbjct: 32 GVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILA 64
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 33.3 bits (76), Expect = 0.081
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYN 117
+++ K+ GNYL+D DG LD + I LG++
Sbjct: 13 IEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGFH 46
Score = 33.3 bits (76), Expect = 0.081
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYN 200
+++ K+ GNYL+D DG LD + I LG++
Sbjct: 13 IEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGFH 46
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 33.1 bits (76), Expect = 0.12
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
V + K+ G ++ DV+G LD + S+V G+ HP ++K + A T +R
Sbjct: 21 VVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSR 74
Score = 32.3 bits (74), Expect = 0.19
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
V + K+ G ++ DV+G LD + S+V G+ HP ++K + A
Sbjct: 21 VVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQA 66
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 32.7 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G YL DVDGN +D + LG+ HP +++
Sbjct: 39 GAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVE 71
Score = 32.7 bits (75), Expect = 0.14
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G YL DVDGN +D + LG+ HP +++
Sbjct: 39 GAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVE 71
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 32.5 bits (75), Expect = 0.18
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G +L+D DG LD + I+ LG+ HP L++
Sbjct: 22 GVWLIDEDGERYLDFASGIAVNSLGHAHPHLVE 54
Score = 32.5 bits (75), Expect = 0.18
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G +L+D DG LD + I+ LG+ HP L++
Sbjct: 22 GVWLIDEDGERYLDFASGIAVNSLGHAHPHLVE 54
>gnl|CDD|227836 COG5549, COG5549, Predicted Zn-dependent protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 236
Score = 31.8 bits (72), Expect = 0.25
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 67 LKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFD 126
+ LS LQ S + D +K+ + +G D ++Q+ + P+GY L +
Sbjct: 32 IVVLLSNLQLHYSPPYYEDLEKALAQWENSGNGG---DYFSQVETSPVGY-----LIWSE 83
Query: 127 DPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFV---DYQKSFGNYLVD 179
P V+ WPQ LENV + + K+F +V+
Sbjct: 84 FPVDVR-------------IRWPQNLENVEGAPRWQGAYLTAVAGWAKTFPLIIVE 126
>gnl|CDD|181872 PRK09456, PRK09456, ?-D-glucose-1-phosphatase; Provisional.
Length = 199
Score = 31.2 bits (71), Expect = 0.32
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPL 114
GN +VD+D N +L V++ +S VPL
Sbjct: 8 GNVIVDIDFNRVLGVWSDLSRVPL 31
Score = 31.2 bits (71), Expect = 0.32
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPL 197
GN +VD+D N +L V++ +S VPL
Sbjct: 8 GNVIVDIDFNRVLGVWSDLSRVPL 31
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 31.4 bits (72), Expect = 0.41
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G + DVDG LD+ I+ LG+ HPA+++
Sbjct: 34 GAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVE 66
Score = 31.4 bits (72), Expect = 0.41
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G + DVDG LD+ I+ LG+ HPA+++
Sbjct: 34 GAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVE 66
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 31.2 bits (71), Expect = 0.41
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G Y+ DV+G LD I+ LG+ HP L
Sbjct: 18 GAYVYDVNGKEYLDFVAGIAVNSLGHAHPKL 48
Score = 31.2 bits (71), Expect = 0.41
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G Y+ DV+G LD I+ LG+ HP L
Sbjct: 18 GAYVYDVNGKEYLDFVAGIAVNSLGHAHPKL 48
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 30.9 bits (71), Expect = 0.54
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 91 GNYLVDVDGNHILDVYTQISS---VPLGYNHPAL 121
G YL DG ++D ISS G+NHP +
Sbjct: 33 GAYLYLADGRELIDA---ISSWWVATHGHNHPYI 63
Score = 30.9 bits (71), Expect = 0.54
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 174 GNYLVDVDGNHILDVYTQISS---VPLGYNHPAL 204
G YL DG ++D ISS G+NHP +
Sbjct: 33 GAYLYLADGRELIDA---ISSWWVATHGHNHPYI 63
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 30.8 bits (70), Expect = 0.62
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G Y VDG LD + I+ +G+ HP +++
Sbjct: 34 GCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQ 66
Score = 30.8 bits (70), Expect = 0.62
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G Y VDG LD + I+ +G+ HP +++
Sbjct: 34 GCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQ 66
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 30.7 bits (70), Expect = 0.65
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
++K+ G+ L D DG +D + ++ G+N+P L
Sbjct: 21 FEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKL 56
Score = 30.7 bits (70), Expect = 0.65
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
++K+ G+ L D DG +D + ++ G+N+P L
Sbjct: 21 FEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKL 56
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 30.4 bits (69), Expect = 0.71
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
G ++ DV+G D + S+V G+ HP +L + A T +R
Sbjct: 22 GVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR 68
Score = 30.4 bits (69), Expect = 0.87
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
G ++ DV+G D + S+V G+ HP +L + A
Sbjct: 22 GVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQA 60
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 30.3 bits (69), Expect = 0.75
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
+D K G + D +G LD + I+ LG+ HP + K
Sbjct: 13 IDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTK 52
Score = 30.3 bits (69), Expect = 0.75
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
+D K G + D +G LD + I+ LG+ HP + K
Sbjct: 13 IDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTK 52
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 30.4 bits (69), Expect = 0.77
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 87 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHP 119
+++ G Y+ DV+G +D ++ LG+NHP
Sbjct: 50 KRARGIYVEDVEGRQFIDCLAGAGTLALGHNHP 82
Score = 30.4 bits (69), Expect = 0.77
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHP 202
+++ G Y+ DV+G +D ++ LG+NHP
Sbjct: 50 KRARGIYVEDVEGRQFIDCLAGAGTLALGHNHP 82
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 30.2 bits (69), Expect = 0.82
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 91 GNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
G YL D+DG LD +S V G+ P + +
Sbjct: 35 GVYLTDIDGRRYLDG---MSGLWCVNHGHGRPEIAE 67
Score = 30.2 bits (69), Expect = 0.82
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 174 GNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
G YL D+DG LD +S V G+ P + +
Sbjct: 35 GVYLTDIDGRRYLDG---MSGLWCVNHGHGRPEIAE 67
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 30.1 bits (68), Expect = 0.92
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 154 NVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSV-PLGYNHPALLK 206
V L Q+ S + G Y+ DVDG +D + ++V LGY HP +++
Sbjct: 43 EVFLHQAMSTPCLDVLASAEGIYIEDVDGKKYMDFHG--NNVHQLGYGHPHVIE 94
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 30.1 bits (68), Expect = 1.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
V + ++ G+ + D +G LD + S+V G+ HP ++K + A T +R
Sbjct: 59 VVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR 112
Score = 29.4 bits (66), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 167 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
V + ++ G+ + D +G LD + S+V G+ HP ++K
Sbjct: 59 VVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIK 98
>gnl|CDD|234538 TIGR04315, octaheme_Shew, octaheme c-type cytochrome, tetrathionate
reductase family. Members of this protein family bind
heme covalently and contain eight (at least) CXXCH
heme-binding motifs. A characterized member is the
respiratory enzyme octaheme tetrathionate reductase from
Shewanella.
Length = 440
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 201 HPALLKIFDDPATVKCSDDKTSHIPTFARTEP 232
H + K+ D A V C +T HIP FAR P
Sbjct: 231 HKSNAKLNDHTAKVAC---QTCHIPEFARGGP 259
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 29.8 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 69 QKLSQLQQSG-SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 122
Q+ + SG V+L V ++ G L DVDGN ++D + I+ + +G++HP ++
Sbjct: 1 QRRAAAVSSGVGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVV 55
Score = 29.1 bits (65), Expect = 2.2
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALL 205
V+L V ++ G L DVDGN ++D + I+ + +G++HP ++
Sbjct: 12 GVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVV 55
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 28.9 bits (66), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G L D DG LD I+ LG+ HP L++
Sbjct: 30 GARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVE 62
Score = 28.9 bits (66), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G L D DG LD I+ LG+ HP L++
Sbjct: 30 GARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVE 62
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 87 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
+KS G+Y+ D++G LD + LG + P L+
Sbjct: 76 EKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVA 112
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
+KS G+Y+ D++G LD + LG + P L+
Sbjct: 76 EKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVA 112
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 28.3 bits (64), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 158 KQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPA 203
K G +F++ K G YL DVDGN +D + LG+ HPA
Sbjct: 30 KSVGGYPIFIERGK--GAYLTDVDGNEYIDYVLGWGPLILGHAHPA 73
Score = 27.5 bits (62), Expect = 6.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPA 120
+F++ K G YL DVDGN +D + LG+ HPA
Sbjct: 37 IFIERGK--GAYLTDVDGNEYIDYVLGWGPLILGHAHPA 73
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 28.4 bits (63), Expect = 4.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 107 TQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS 160
T +SV + AL K F P+ TF++ + + + + L+E+VL + S
Sbjct: 647 TDRASV-VEPEMAALTKAFTTPSHFSTFISSTGMSLSEASESADLIESVLTENS 699
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 28.1 bits (63), Expect = 4.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPA 120
G ++ DVDGN ++ + +V LG+ +P
Sbjct: 39 GAHVWDVDGNEYIEYGMGLRAVGLGHAYPP 68
Score = 28.1 bits (63), Expect = 4.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPA 203
G ++ DVDGN ++ + +V LG+ +P
Sbjct: 39 GAHVWDVDGNEYIEYGMGLRAVGLGHAYPP 68
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G L DVDG +D+ SS +G+ P +++
Sbjct: 33 GATLTDVDGKTYIDLLASASSQNVGHAPPRVVE 65
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G L DVDG +D+ SS +G+ P +++
Sbjct: 33 GATLTDVDGKTYIDLLASASSQNVGHAPPRVVE 65
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 27.7 bits (62), Expect = 5.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G Y DVDGN +D + G+ HP + K
Sbjct: 44 GAYFYDVDGNKYIDYLAAYGPIITGHAHPHITK 76
Score = 27.7 bits (62), Expect = 5.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G Y DVDGN +D + G+ HP + K
Sbjct: 44 GAYFYDVDGNKYIDYLAAYGPIITGHAHPHITK 76
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 27.7 bits (62), Expect = 6.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHP 119
G Y+ D+DG +LD + +V +G+N
Sbjct: 33 GVYVYDIDGKKLLDGVGGLWNVNVGHNRE 61
Score = 27.7 bits (62), Expect = 6.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHP 202
G Y+ D+DG +LD + +V +G+N
Sbjct: 33 GVYVYDIDGKKLLDGVGGLWNVNVGHNRE 61
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 27.4 bits (61), Expect = 6.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR 137
G ++ D +GN +D+ + S+V G+ HP +++ D A T +R
Sbjct: 31 GVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR 77
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 27.5 bits (62), Expect = 7.1
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 85 DYQKSFGNYLVDVDGNHILDVYTQISSVPLG-------YNHP---ALLKIFDDPATV--K 132
+ ++ G+ L Q+ PLG +N+P + K+ PA +
Sbjct: 113 ELKRLDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLI--PALIMGN 170
Query: 133 TFVNRPA 139
T V +PA
Sbjct: 171 TVVFKPA 177
>gnl|CDD|217892 pfam04100, Vps53_N, Vps53-like, N-terminal. Vps53 complexes with
Vps52 and Vps54 to form a multi- subunit complex
involved in regulating membrane trafficking events.
Length = 375
Score = 27.4 bits (61), Expect = 7.5
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 62 PQTKALKQKLSQLQQSGSVSLFVDYQKSFGN 92
+ L + +S+L+ S +F D++ +FG+
Sbjct: 157 DEIANLSESISKLKGSLLSQIFQDFKSAFGS 187
>gnl|CDD|146789 pfam04337, DUF480, Protein of unknown function, DUF480. This
family consists of several proteins of uncharacterized
function.
Length = 148
Score = 26.7 bits (60), Expect = 8.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 24 RTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTE--VPGPQT 64
R PKY H+F LS + A L+ + GPQT
Sbjct: 72 RVPKYEHRFCNTLQLSPQELA----------LLCLLLLRGPQT 104
>gnl|CDD|236835 PRK11069, recC, exonuclease V subunit gamma; Provisional.
Length = 1122
Score = 27.2 bits (61), Expect = 8.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 24 RTPKYPHQFNPGRNLSSAQ---PAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQ 75
R P P F PG S A+ PAA+ +HP V +P + L L +LQ
Sbjct: 786 RMPFDPQNFQPGEQQSYAREWLPAASQQGKAHPDFVQPLPFEPPEEL--TLDELQ 838
>gnl|CDD|149458 pfam08404, Baculo_p74_N, Baculoviridae P74 N-terminal. This domain
is found at the N-terminus of P74 occlusion-derived
virus (ODV) envelope proteins which are required for
oral infectivity. The envelope proteins are found in
baculoviruses which are insect pathogens. The C-terminus
of P74 is anchored to the membrane whereas the
N-terminus is exposed to the virion surface. Furthermore
P74 is unusual for a virus envelope protein as it lacks
an N-terminal localisation signal sequence. Also see
pfam04583.
Length = 301
Score = 26.9 bits (60), Expect = 9.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 106 YTQISSVPLGYNHPA 120
YTQ S + Y PA
Sbjct: 89 YTQTSETAVQYAQPA 103
Score = 26.9 bits (60), Expect = 9.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 189 YTQISSVPLGYNHPA 203
YTQ S + Y PA
Sbjct: 89 YTQTSETAVQYAQPA 103
>gnl|CDD|233677 TIGR01995, PTS-II-ABC-beta, PTS system, beta-glucoside-specific
IIABC component. This model represents a family of PTS
enzyme II proteins in which all three domains are found
in the same polypeptide chain and which appear to have a
broad specificity for beta-glucosides including salicin
(beta-D-glucose-1-salicylate) and arbutin
(Hydroquinone-O-beta-D-glucopyranoside). These are
distinct from the closely related sucrose-specific and
trehalose-specific PTS transporters.
Length = 610
Score = 26.9 bits (60), Expect = 9.8
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 73 QLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK 132
++ +S + KS G Y V V GN + DVY + V DD K
Sbjct: 39 DTEKLKKISGVITVVKSGGQYQV-VIGNDVNDVYQALMDVLG--LDDQAED--DDSKGKK 93
Query: 133 TFVNR 137
+ +N+
Sbjct: 94 SILNK 98
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 27.2 bits (60), Expect = 9.9
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 19 PQNLYRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQ 75
P+NL+R PK P Q + L S + PS + T+VP + + LK+ L+
Sbjct: 43 PRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLLKKAFDLLE 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.406
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,037,229
Number of extensions: 1106745
Number of successful extensions: 1147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 111
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)