RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy237
(236 letters)
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 142 bits (361), Expect = 3e-40
Identities = 53/110 (48%), Positives = 80/110 (72%)
Query: 49 EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
+ P + TEVPGP+++ L ++L+ +Q + +V F +Y++S GNYLVDVDGN +LD+Y+Q
Sbjct: 12 DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQ 71
Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
ISS+P+GY+HPAL+K+ P V TF+NRPALG+ P ++ + L LL
Sbjct: 72 ISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLS 121
Score = 80.4 bits (199), Expect = 9e-18
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 159 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
+ +V F +Y++S GNYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+ P
Sbjct: 39 NAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ 92
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 95.0 bits (237), Expect = 7e-23
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 57 TEVPGPQTKA--LKQKLSQLQQSGSVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVP 113
+ G T + + L + + + +D +S G+YLVD + G LD++T ++S
Sbjct: 8 VALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSA 67
Query: 114 LGYNHPALLK-IFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS 162
LG N PAL+ ++ +N+P+ S + +E
Sbjct: 68 LGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDP 117
Score = 73.1 bits (180), Expect = 3e-15
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 135 VNRPALGVFPSG--DWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVD-VDGNHILDVYTQ 191
V AL P+ ++L +L + +D +S G+YLVD + G LD++T
Sbjct: 5 VKSVALAGRPTTPDRVHEVLGRSMLVDGLD--IVLDLTRSGGSYLVDAITGRRYLDMFTF 62
Query: 192 ISSVPLGYNHPALLKIFDDPATVKCSDDKTSHI 224
++S LG N PAL+ + +
Sbjct: 63 VASSALGMNPPALVD------DREFHAELMQAA 89
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 56.4 bits (137), Expect = 2e-09
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 39 SSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSG---SVSLFVDYQKSFGNYLV 95
+ +VT +PGP++ AL ++ +G + ++ + G +V
Sbjct: 2 PGSMTDITYRLAQKRTIVTPLPGPRSGALAERRRAAVSAGVGSTAPVYAV--DADGGVIV 59
Query: 96 DVDGNHILDVYTQISSVPLGYNHPALLK 123
D DGN +D+ I+ +G +HPA+
Sbjct: 60 DADGNSFIDLGAGIAVTTVGASHPAVAA 87
Score = 37.2 bits (87), Expect = 0.003
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G +VD DGN +D+ I+ +G +HPA+
Sbjct: 55 GGVIVDADGNSFIDLGAGIAVTTVGASHPAVAA 87
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 54.9 bits (133), Expect = 4e-09
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 43 PAAALSEPSH-PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDY----QKSFGNYLVDV 97
P + +S P L T +PGP+++AL + + + + + ++ G + DV
Sbjct: 2 PGSMVSHPEQSRHLATAIPGPRSQAL---IDRKGTAVARGVGTTMPVYAVRAGGGIVEDV 58
Query: 98 DGNHILDVYTQISSVPLGYNHPALLK 123
DGN ++D+ + I+ +G + P +++
Sbjct: 59 DGNRLIDLGSGIAVTTVGNSAPKVVE 84
Score = 38.3 bits (90), Expect = 0.001
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G + DVDGN ++D+ + I+ +G + P +++
Sbjct: 52 GGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVE 84
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 43.3 bits (103), Expect = 4e-05
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEP 232
G+++ D DG ILD + S LG+ HP ++ + + K H+ + + P
Sbjct: 34 GSFVYDADGRAILDFTSGQMSAVLGHCHPEIV------SVIGEYAGKLDHLFSEMLSRP 86
Score = 41.4 bits (98), Expect = 1e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G+++ D DG ILD + S LG+ HP ++
Sbjct: 34 GSFVYDADGRAILDFTSGQMSAVLGHCHPEIVS 66
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 39.8 bits (94), Expect = 4e-04
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 61 GPQT-KALKQK----LSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLG 115
G KAL + + LQ+ L + G L++ +G ++D+ + LG
Sbjct: 1 GSHMTKALYDRDGAAIGNLQKLRFFPLAIS--GGRGARLIEENGRELIDLSGAWGAASLG 58
Query: 116 YNHPALLK 123
Y HPA++
Sbjct: 59 YGHPAIVA 66
Score = 39.8 bits (94), Expect = 5e-04
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G L++ +G ++D+ + LGY HPA++
Sbjct: 34 GARLIEENGRELIDLSGAWGAASLGYGHPAIVA 66
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 38.3 bits (90), Expect = 0.001
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G ++ D +GN +D+ + S+V G+ HP ++
Sbjct: 27 GVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIIN 59
Score = 38.3 bits (90), Expect = 0.001
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G ++ D +GN +D+ + S+V G+ HP ++
Sbjct: 27 GVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIIN 59
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 38.0 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 36 RNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLS--QLQQSGSVSLFVDYQ------ 87
L+ Q A LS H + + K ++ + + + +Y
Sbjct: 3 SKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYGAHNYHPLPVAL 62
Query: 88 -KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
+ G YL DV+G D + S+V G+ HP ++
Sbjct: 63 ERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVN 99
Score = 37.2 bits (87), Expect = 0.003
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G YL DV+G D + S+V G+ HP ++
Sbjct: 67 GIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVN 99
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G ++ DV+ D + SSV G+ HP +L
Sbjct: 56 GVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILN 88
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G ++ DV+ D + SSV G+ HP +L
Sbjct: 56 GVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILN 88
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 36.4 bits (85), Expect = 0.006
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
+ DV+G LD I+ + G+ HP ++
Sbjct: 32 NCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVA 64
Score = 36.4 bits (85), Expect = 0.006
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
+ DV+G LD I+ + G+ HP ++
Sbjct: 32 NCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVA 64
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 36.0 bits (84), Expect = 0.007
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 91 GNYLVDVDGNHILDVYTQISS---VPLGYNHPAL 121
G + D++G D SS G+ L
Sbjct: 35 GIKVKDINGKEYYDG---FSSVWLNVHGHRKKEL 65
Score = 36.0 bits (84), Expect = 0.007
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 174 GNYLVDVDGNHILDVYTQISS---VPLGYNHPAL 204
G + D++G D SS G+ L
Sbjct: 35 GIKVKDINGKEYYDG---FSSVWLNVHGHRKKEL 65
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 35.2 bits (82), Expect = 0.013
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 91 GNYLVDVDGNHILDVYTQISS---VPLGYNHPAL 121
G L+ DG ++D +SS GYNHP L
Sbjct: 34 GCELILSDGRRLVDG---MSSWWAAIHGYNHPQL 64
Score = 35.2 bits (82), Expect = 0.013
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 174 GNYLVDVDGNHILDVYTQISS---VPLGYNHPAL 204
G L+ DG ++D +SS GYNHP L
Sbjct: 34 GCELILSDGRRLVDG---MSSWWAAIHGYNHPQL 64
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 34.0 bits (79), Expect = 0.036
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G + D +GN +D LG+ +P +++
Sbjct: 36 GARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 68
Score = 34.0 bits (79), Expect = 0.036
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G + D +GN +D LG+ +P +++
Sbjct: 36 GARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.037
Identities = 46/317 (14%), Positives = 82/317 (25%), Gaps = 135/317 (42%)
Query: 11 YQYRTPKYPQNLY---RTPKY--PHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTK 65
+ R P +Y R Y F N+S QP
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQP--------------------YL 138
Query: 66 ALKQKLSQLQQSGSVSLF-------------------VDYQKSFGNYLVDVDGN------ 100
L+Q L +L+ + +V + V + F + +++ N
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPET 197
Query: 101 ---HILDVYTQI-----------SSVPLGYN--------------HP-ALLKIFDD---P 128
+ + QI S++ L + + LL + +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNA 256
Query: 129 ATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDV 188
F L ++L L + V+ F+ + +H
Sbjct: 257 KAWNAF----NLSC-------KIL---LTTRFKQVTDFLS-----AATTTHISLDHHSMT 297
Query: 189 YTQ--------------ISSVP--LGYNHPALLKIF-----DDPAT------VKCSDDKT 221
T +P + +P L I D AT V C DK
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC--DKL 355
Query: 222 SHI--PTFARTEPPDTQ 236
+ I + EP + +
Sbjct: 356 TTIIESSLNVLEPAEYR 372
Score = 28.3 bits (62), Expect = 2.8
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 23/94 (24%)
Query: 75 QQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTF 134
Q + ++ +F + + D + D+ I S + D K
Sbjct: 14 HQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSK----------EEIDHIIMSKDA 60
Query: 135 VNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVD 168
V+ L +L KQ V FV+
Sbjct: 61 VSGTLR----------LFWTLLSKQEEMVQKFVE 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.040
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 49/121 (40%)
Query: 12 QYRTPKYPQNLYRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQ-- 69
Q R P + + R K+ ++F P ++ P H L+ K L +
Sbjct: 404 QSRIP-FSE---RKLKFSNRFLP------------VASPFHSHLLVPASDLINKDLVKNN 447
Query: 70 ---KLSQLQ------QSGSVSLFVDYQKSFGN---YLVD------VD--------GNHIL 103
+Q GS D + G+ +VD V HIL
Sbjct: 448 VSFNAKDIQIPVYDTFDGS-----DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 104 D 104
D
Sbjct: 503 D 503
Score = 33.9 bits (77), Expect = 0.053
Identities = 39/231 (16%), Positives = 67/231 (29%), Gaps = 66/231 (28%)
Query: 20 QNLYRTPKYPHQFNP-----GRNLSSAQPAAALSEPSHPQ-------LVTEVPGPQTKAL 67
++LY+T Y LS +E Q L P L
Sbjct: 174 RDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 68 KQKLSQLQQSGSVSL---FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKI 124
S +S V Q +Y+V ++ LG+ L
Sbjct: 232 L--------SIPISCPLIGV-IQ--LAHYVV--------------TAKLLGFTPGELRSY 266
Query: 125 FDDPATV-KTFVNRPALGVFPSGDWPQLLENV-----LLKQSGSVSLFVDYQKSFGNYLV 178
+ V A+ + + W +V +L G +++ N +
Sbjct: 267 LKGATGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRC-----YEAYPNTSL 319
Query: 179 DVDGNHILDVYTQISSVPLGYNHPA-LLKIFD-DPATVKCSDDKT-SHIPT 226
IL+ S+ P+ +L I + V+ +KT SH+P
Sbjct: 320 PPS---ILE-----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Score = 33.5 bits (76), Expect = 0.066
Identities = 32/207 (15%), Positives = 59/207 (28%), Gaps = 63/207 (30%)
Query: 30 HQFNPGRNLSSAQPAAALS----EPSHPQLVTEVPGPQTKALKQKLSQLQQSG------S 79
++ P +L + +L PS P L + + ++ +++
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPS-PMLS--ISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 80 VSL------FV--DYQKS---FGNYL------VDVDGNHI------LDVYTQ---ISSVP 113
+SL V +S L +D + I L + ++ P
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SP 426
Query: 114 L--GYNHPALLKIFDDPATVKTFVNRPALG--VFPSGDWPQLLENVLLKQSGSV--SLF- 166
PA I D N + V+ + D + L SGS+ +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG----SD-LRVLSGSISERIVD 481
Query: 167 ------VDYQKSFGNYLVDVDGNHILD 187
V ++ HILD
Sbjct: 482 CIIRLPVKWET-----TTQFKATHILD 503
Score = 29.6 bits (66), Expect = 1.1
Identities = 24/180 (13%), Positives = 45/180 (25%), Gaps = 61/180 (33%)
Query: 62 PQTKALKQKLSQLQQSGSVSLFV---------DY----QKSFGNY------LVDVDGNHI 102
P K L + G+ L DY + + Y L+ +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 103 LDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS 162
++ + + + ++ P+ P D+ LL S
Sbjct: 196 SELIRTTLDAEKVFTQG-----LN----ILEWLENPS--NTPDKDY--LL-------SIP 235
Query: 163 VSL---FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDD 219
+S V Q +Y+V ++ LG+ L S
Sbjct: 236 ISCPLIGV-IQ--LAHYVV--------------TAKLLGFTPGELRSYL--KGATGHSQG 276
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 32.8 bits (76), Expect = 0.078
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G YL D +G LD + I LG+ +P L +
Sbjct: 19 GVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTE 51
Score = 32.8 bits (76), Expect = 0.078
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G YL D +G LD + I LG+ +P L +
Sbjct: 19 GVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTE 51
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 32.5 bits (75), Expect = 0.097
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G YL D LD + I LGYNH
Sbjct: 27 GVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNA 59
Score = 32.5 bits (75), Expect = 0.097
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G YL D LD + I LGYNH
Sbjct: 27 GVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNA 59
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 31.7 bits (73), Expect = 0.17
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G+++ D GN LD + I+ LG++HP L++
Sbjct: 31 GSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVE 63
Score = 31.7 bits (73), Expect = 0.17
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G+++ D GN LD + I+ LG++HP L++
Sbjct: 31 GSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVE 63
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 31.8 bits (73), Expect = 0.20
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
G+ + D G +D I+ LG+ HPAL++
Sbjct: 48 GSRVWDQQGKEYIDFAGGIAVTALGHCHPALVE 80
Score = 31.8 bits (73), Expect = 0.20
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
G+ + D G +D I+ LG+ HPAL++
Sbjct: 48 GSRVWDQQGKEYIDFAGGIAVTALGHCHPALVE 80
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 31.4 bits (72), Expect = 0.22
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGY-NHPALLK 123
G ++ DVDGN LD + I LG+ +HP ++K
Sbjct: 33 GVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIK 66
Score = 31.4 bits (72), Expect = 0.22
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGY-NHPALLK 206
G ++ DVDGN LD + I LG+ +HP ++K
Sbjct: 33 GVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIK 66
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 30.7 bits (70), Expect = 0.40
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
LF+ + G + DVDGN LD + + LG+ HP +
Sbjct: 37 DPHGLFIS--DAQGVHKTDVDGNVYLD-F--FGGHGALVLGHGHPRVNA 80
Score = 30.7 bits (70), Expect = 0.40
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 161 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
LF+ + G + DVDGN LD + + LG+ HP +
Sbjct: 37 DPHGLFIS--DAQGVHKTDVDGNVYLD-F--FGGHGALVLGHGHPRVNA 80
>2kpt_A Putative secreted protein; methods development, alpha/beta,
structural genomics, PSI-2, protein structure
initiative; NMR {Corynebacterium glutamicum}
Length = 148
Score = 29.8 bits (67), Expect = 0.42
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 40 SAQPAAALSEPSHPQLVTE----VPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNY 93
+ A S + VT+ + ++ + ++ S +FV + SF
Sbjct: 1 TETYVLAESPEFYQDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSFDGV 58
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 30.6 bits (70), Expect = 0.44
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G ++ D+ G LD + + V GY L
Sbjct: 40 GCWVEDIQGKRYLDGMSGLWCVNSGYGRKEL 70
Score = 30.6 bits (70), Expect = 0.44
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G ++ D+ G LD + + V GY L
Sbjct: 40 GCWVEDIQGKRYLDGMSGLWCVNSGYGRKEL 70
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 30.2 bits (69), Expect = 0.53
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G++LVD G + D + + + G+ +
Sbjct: 41 GSWLVDDKGRKVYDSLSGLWTCGAGHTRKEI 71
Score = 30.2 bits (69), Expect = 0.53
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G++LVD G + D + + + G+ +
Sbjct: 41 GSWLVDDKGRKVYDSLSGLWTCGAGHTRKEI 71
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 30.3 bits (69), Expect = 0.61
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G Y+VDV+G LD + + ++ G++H L
Sbjct: 52 GPYIVDVNGRRYLDANSGLWNMVAGFDHKGL 82
Score = 30.3 bits (69), Expect = 0.61
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G Y+VDV+G LD + + ++ G++H L
Sbjct: 52 GPYIVDVNGRRYLDANSGLWNMVAGFDHKGL 82
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity,
transcription regulator; 1.95A {Enterobacteria phage
186} PDB: 2fkd_A
Length = 189
Score = 29.6 bits (66), Expect = 0.66
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 149 PQLLENVLLKQSGSVSLFVDYQKSF--GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
+ L + + +S FVD Q S G +LVD+ G + + +++ +P L
Sbjct: 109 TKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIKGA--ISIR-ELTKLPGR-----KLH 160
Query: 207 IFDDPATVKCSDD 219
+ +C D
Sbjct: 161 VAGGKVPFECGID 173
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 29.9 bits (68), Expect = 0.71
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
L + + G+ DVDG+ ++ + + G++HP +
Sbjct: 80 RPFPLVIA--QGTGSRFQDVDGHAYVN-F--LGEYTAGLFGHSHPVIRA 123
Score = 29.9 bits (68), Expect = 0.71
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 161 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
L + + G+ DVDG+ ++ + + G++HP +
Sbjct: 80 RPFPLVIA--QGTGSRFQDVDGHAYVN-F--LGEYTAGLFGHSHPVIRA 123
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 91 GNYLV---DVDGNHILDVYTQISS---VPLGYNHPAL 121
G +L D +LD +SS G+ HPAL
Sbjct: 63 GAWLTLIRDGQPIEVLDA---MSSWWTAIHGHGHPAL 96
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 174 GNYLV---DVDGNHILDVYTQISS---VPLGYNHPAL 204
G +L D +LD +SS G+ HPAL
Sbjct: 63 GAWLTLIRDGQPIEVLDA---MSSWWTAIHGHGHPAL 96
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G YL D +GN I+D + V +GY
Sbjct: 41 GVYLWDSEGNKIIDGMAGLWCVNVGYGRKDF 71
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G YL D +GN I+D + V +GY
Sbjct: 41 GVYLWDSEGNKIIDGMAGLWCVNVGYGRKDF 71
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G +L D +G ILD + V +GY L
Sbjct: 46 GVWLNDSEGEEILDAMAGLWCVNIGYGRDEL 76
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G +L D +G ILD + V +GY L
Sbjct: 46 GVWLNDSEGEEILDAMAGLWCVNIGYGRDEL 76
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 28.6 bits (63), Expect = 1.8
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 218 DDKTSHIPTFARTEPPDTQ 236
K S R P +
Sbjct: 122 QHKDSEYSHLTRVAPAYAK 140
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 28.7 bits (65), Expect = 1.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G +L D G LD + +G+ +
Sbjct: 20 GVFLYDDAGRRYLDGSSGALVANIGHGRAEV 50
Score = 28.7 bits (65), Expect = 1.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G +L D G LD + +G+ +
Sbjct: 20 GVFLYDDAGRRYLDGSSGALVANIGHGRAEV 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.3
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 38/66 (57%)
Query: 68 KQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL-LKIFD 126
KQ L +LQ S L +Y S+ PAL +K
Sbjct: 19 KQALKKLQAS-------------------------LKLYADDSA-------PALAIK--- 43
Query: 127 DPATVK 132
AT++
Sbjct: 44 --ATME 47
Score = 26.5 bits (57), Expect = 6.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 9/22 (40%)
Query: 122 LKIF-DDPATVKTFVNRPALGV 142
LK++ DD A PAL +
Sbjct: 29 LKLYADDSA--------PALAI 42
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 28.3 bits (64), Expect = 2.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G + D +G +D + + V +GY +
Sbjct: 42 GVTVWDNNGRKSIDAFAGLYCVNVGYGRQKI 72
Score = 28.3 bits (64), Expect = 2.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G + D +G +D + + V +GY +
Sbjct: 42 GVTVWDNNGRKSIDAFAGLYCVNVGYGRQKI 72
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 28.2 bits (64), Expect = 2.5
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
G + ++ + G Y DVDGN +D Y +++ + G+ HP + K
Sbjct: 35 GGAPIAME--RGKGAYFWDVDGNKYID-Y--LAAYGPIITGHAHPHITK 78
Score = 28.2 bits (64), Expect = 2.5
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 161 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
G + ++ + G Y DVDGN +D Y +++ + G+ HP + K
Sbjct: 35 GGAPIAME--RGKGAYFWDVDGNKYID-Y--LAAYGPIITGHAHPHITK 78
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 27.8 bits (63), Expect = 3.0
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
+ D + Y DVDGN +D Y + + G+ HP +++
Sbjct: 36 IVFD--RVKDAYAWDVDGNRYID-Y--VGTWGPAICGHAHPEVIE 75
Score = 27.8 bits (63), Expect = 3.0
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
+ D + Y DVDGN +D Y + + G+ HP +++
Sbjct: 36 IVFD--RVKDAYAWDVDGNRYID-Y--VGTWGPAICGHAHPEVIE 75
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 28.0 bits (63), Expect = 3.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
G Y+ DG ++D + +GY +
Sbjct: 45 GIYVHTEDGRRLIDGPAGMWCAQVGYGRREI 75
Score = 28.0 bits (63), Expect = 3.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPAL 204
G Y+ DG ++D + +GY +
Sbjct: 45 GIYVHTEDGRRLIDGPAGMWCAQVGYGRREI 75
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 27.9 bits (63), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
+V + G YL VDG I+D + + + LG+ HP +L+
Sbjct: 40 FYVK--RGEGAYLYTVDGARIVD-L--VLAYGPLILGHKHPRVLE 79
Score = 27.9 bits (63), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
+V + G YL VDG I+D + + + LG+ HP +L+
Sbjct: 40 FYVK--RGEGAYLYTVDGARIVD-L--VLAYGPLILGHKHPRVLE 79
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 27.8 bits (63), Expect = 3.3
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 8/45 (17%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
LF++ ++ G YL DVDG +D Y + S + LG+NHPA+ +
Sbjct: 37 LFIE--RADGAYLFDVDGKAYID-Y--VGSWGPMILGHNHPAIRQ 76
Score = 27.8 bits (63), Expect = 3.3
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 8/45 (17%)
Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
LF++ ++ G YL DVDG +D Y + S + LG+NHPA+ +
Sbjct: 37 LFIE--RADGAYLFDVDGKAYID-Y--VGSWGPMILGHNHPAIRQ 76
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 27.8 bits (63), Expect = 3.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
F+ + G Y+ D DGN LD Y + S + LG+ HP +L
Sbjct: 36 PFLV--RGEGAYVWDADGNRYLD-Y--VMSWGPLILGHAHPKVLA 75
Score = 27.8 bits (63), Expect = 3.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
F+ + G Y+ D DGN LD Y + S + LG+ HP +L
Sbjct: 36 PFLV--RGEGAYVWDADGNRYLD-Y--VMSWGPLILGHAHPKVLA 75
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel,
protein-substrate complex, multi-binding states; HET:
DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A
1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Length = 243
Score = 27.4 bits (62), Expect = 3.7
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 53 PQLVTEVP--------------GPQTKALKQKLSQLQQSGS-VSLFVD 85
P VP Q ++ +L +G VSLF+D
Sbjct: 88 PHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID 135
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 27.5 bits (62), Expect = 3.8
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 123
G LF++ + G+ + D+DGN +D Y + S + G+ + +++
Sbjct: 33 GMNPLFME--RGKGSKVYDIDGNEYID-Y--VLSWGPLIHGHANDRVVE 76
Score = 27.5 bits (62), Expect = 3.8
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 161 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS---VPLGYNHPALLK 206
G LF++ + G+ + D+DGN +D Y + S + G+ + +++
Sbjct: 33 GMNPLFME--RGKGSKVYDIDGNEYID-Y--VLSWGPLIHGHANDRVVE 76
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid,
niaid, SBRI, cytoplasm, pyridoxine biosynthesis,
transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Length = 278
Score = 27.5 bits (62), Expect = 3.9
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 53 PQLVTEVP--------------GPQTKALKQKLSQLQQSGS-VSLFVD 85
P VP A++ QL +G VSLF+D
Sbjct: 116 PHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID 163
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural
genomics, IDP90671, center for structural genomic
infectious diseases; HET: MSE; 1.87A {Campylobacter
jejuni subsp} PDB: 3o6d_A*
Length = 260
Score = 26.9 bits (60), Expect = 5.3
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 13/46 (28%)
Query: 53 PQLVTEVPGP------------QTKALKQKLSQLQQSGS-VSLFVD 85
P VT VP LKQ + +LQ + VSLF++
Sbjct: 87 PHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN 132
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 26.8 bits (60), Expect = 6.6
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 65 KALKQKLSQLQQSGSVSLFVDYQKSF----GNYLVDVDGNHILDVY---TQISSVP 113
A+++ L SG ++L ++ F G+++ D IL + ++P
Sbjct: 168 IAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGRILQPKLLSEALLAIP 223
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene
regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP:
c.22.1.1
Length = 225
Score = 26.2 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 58 EVPGPQTKALKQKLSQLQQSGSVSLFVD 85
++ P+TK+LK+ L LQ S +L V
Sbjct: 129 KLERPKTKSLKEILQNLQLSDKKTLIVL 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.406
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,591,574
Number of extensions: 200414
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 86
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)