RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy237
(236 letters)
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 105 bits (262), Expect = 7e-27
Identities = 53/112 (47%), Positives = 81/112 (72%)
Query: 49 EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
+ P + TEVPGP+++ L ++L+ +Q + +V F +Y++S GNYLVDVDGN +LD+Y+Q
Sbjct: 2 DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQ 61
Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS 160
ISS+P+GY+HPAL+K+ P V TF+NRPALG+ P ++ + L LL +
Sbjct: 62 ISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 113
Score = 59.7 bits (143), Expect = 4e-11
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Query: 159 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSD 218
+ +V F +Y++S GNYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+ P
Sbjct: 29 NAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ------ 82
Query: 219 DKTSHIPTFARTEPP 233
+ ++ I A P
Sbjct: 83 NVSTFINRPALGILP 97
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 52.1 bits (124), Expect = 2e-08
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 62 PQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
P + + ++ + + L V ++ G YL DV+G D + IS+V G+ HP +
Sbjct: 3 PTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKI 62
Query: 122 LK 123
+
Sbjct: 63 VN 64
Score = 49.0 bits (116), Expect = 1e-07
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
+ G YL DV+G D + IS+V G+ HP ++
Sbjct: 29 RGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVN 64
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 51.2 bits (121), Expect = 3e-08
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFART 230
++ G+++ D DG ILD + S LG+ HP ++ + + A K H+ + +
Sbjct: 29 RAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA------GKLDHLFSEMLS 82
Query: 231 EP 232
P
Sbjct: 83 RP 84
Score = 48.9 bits (115), Expect = 2e-07
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
++ G+++ D DG ILD + S LG+ HP ++
Sbjct: 29 RAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVS 64
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 50.6 bits (120), Expect = 4e-08
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG 141
+F D ++ + DV+G LD I+ + G+ HP ++ + + L
Sbjct: 24 IFAD--RAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 81
Query: 142 VFPSGDWPQLL 152
P + +++
Sbjct: 82 YEPYLELCEIM 92
Score = 49.5 bits (117), Expect = 1e-07
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHI 224
+F D ++ + DV+G LD I+ + G+ HP ++ V+ K SH
Sbjct: 24 IFAD--RAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVA------AVEAQLKKLSHT 75
Query: 225 PTFARTEPP 233
P
Sbjct: 76 CFQVLAYEP 84
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 50.8 bits (120), Expect = 4e-08
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEPP 233
G L+ DG ++D + + GYNHP L D SH+ T P
Sbjct: 34 GCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI------DAMSHVMFGGITHAP 87
Score = 50.4 bits (119), Expect = 5e-08
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 91 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQ 150
G L+ DG ++D + + GYNHP L + V + P+ + +
Sbjct: 34 GCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCR 93
Query: 151 LL 152
L
Sbjct: 94 KL 95
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 49.4 bits (117), Expect = 1e-07
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
+ G + D +GN +D LG+ +P +++
Sbjct: 25 RGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 60
Score = 49.4 bits (117), Expect = 1e-07
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
+ G + D +GN +D LG+ +P +++
Sbjct: 25 RGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 60
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 49.0 bits (116), Expect = 1e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
++ G ++ DV+ D + SSV G+ HP +L
Sbjct: 27 RAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILN 62
Score = 49.0 bits (116), Expect = 1e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
++ G ++ DV+ D + SSV G+ HP +L
Sbjct: 27 RAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILN 62
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 46.0 bits (108), Expect = 2e-06
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 135 VNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS 194
V+ P G P + + + Y DVDGN +D
Sbjct: 21 VSSPVRAFKSVGGQPIVFD-----------------RVKDAYAWDVDGNRYIDYVGTWGP 63
Query: 195 VPLGYNHPALLK 206
G+ HP +++
Sbjct: 64 AICGHAHPEVIE 75
Score = 45.2 bits (106), Expect = 3e-06
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
+ Y DVDGN +D G+ HP +++
Sbjct: 40 RVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIE 75
>d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
sapiens), fibrinogen-420, alpha-E [TaxId: 9606]}
Length = 197
Score = 25.6 bits (55), Expect = 4.5
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 73 QLQQSGSVSL---FVDYQKSFGNYLVDVDGNHIL 103
Q + GS++ + DY++ FG+ + +G L
Sbjct: 7 QQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWL 40
Score = 25.2 bits (54), Expect = 7.3
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 159 QSGSVSL---FVDYQKSFGNYLVDVDGNHIL 186
GS++ + DY++ FG+ + +G L
Sbjct: 10 MDGSLNFNRTWQDYKRGFGSLNDEGEGEFWL 40
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 25.7 bits (56), Expect = 4.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 81 SLFVDYQKSFGNYLVDVD 98
L V +K GN+ ++VD
Sbjct: 2 FLKVRAEKRLGNFRLNVD 19
Score = 25.7 bits (56), Expect = 4.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 164 SLFVDYQKSFGNYLVDVD 181
L V +K GN+ ++VD
Sbjct: 2 FLKVRAEKRLGNFRLNVD 19
>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 309
Score = 24.9 bits (54), Expect = 8.9
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 35 GRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLS--QLQQSGSVSLFVDYQKSFGN 92
GR+ + + +P + G K ++ + + + F+ Y +F
Sbjct: 205 GRHKFNDVELSDEEKPGNAHNAVTNIGDDLKIVRANMPFANTSKGEYGTYFIGYASTFST 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.406
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,288
Number of extensions: 39374
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 21
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)