BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2371
(816 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/834 (46%), Positives = 513/834 (61%), Gaps = 38/834 (4%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
+FGSRN R L++ +K+V IN +E M+KLSDEEL+ +T++ + + GE L++++P+AF
Sbjct: 1 VFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAF 60
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
+V REASKRV MRHFDVQL+GG+ L+ I+EM+TGEGKTL ATL AYLN+L+G+GVH+
Sbjct: 61 AVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHV 120
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLR 186
VT++DYLA+RDAE L+ +LGL++G+N + K+++Y ADITYGTNNE+GFDYLR
Sbjct: 121 VTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLR 180
Query: 187 DNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINPIPKLLV 246
DNM F+ +RVQRKL++ ARTPLIISG +++++ + ++ IP L+
Sbjct: 181 DNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240
Query: 247 PEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYENILIK------------- 293
E G + +D ++ QV LTE G E +L+K
Sbjct: 241 QE-------KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293
Query: 294 ----------MALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKE 343
ALRAH L VDE TGR M+ RRW++GLHQA+EAKE
Sbjct: 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 353
Query: 344 NLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRK 403
++IQNE QTLASITFQNYFR+Y+K++GMTGTA+TEA+EF IYKL+T+ VP N+ RK
Sbjct: 354 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 413
Query: 404 DLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463
DL D +Y T EK QAI+ DIK K QPVLVGT SIE SEL+SN L K + H+VLNA
Sbjct: 414 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 473
Query: 464 KQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXX 523
K H EA I+AQAG+P +TIATNMAGRGTDI+LGG+ + +
Sbjct: 474 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEV------AALENPTAEQIE 527
Query: 524 XXXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXX 583
W + HD V+ +GGLHIIGTERHESRRIDNQLRGRSGRQGD GSSR
Sbjct: 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587
Query: 584 XXXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQ 643
++ +M KL + G++IE + +I +AQRK+E RNFDIRKQLLEYDD+ N+Q
Sbjct: 588 RIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQ 647
Query: 644 RKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXX 703
R+ I +RN+LL+ ++SE I +R DV YI + ++ WDI GL+ LK +
Sbjct: 648 RRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFD 707
Query: 704 XXXXXXX--XXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYW 761
L + ++LQ++D W
Sbjct: 708 LDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLW 767
Query: 762 IEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
EHL ++D LRQGI+LR YAQKDPK+EYKRE+F +F ML +KYE I + +
Sbjct: 768 KEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKV 821
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/834 (46%), Positives = 513/834 (61%), Gaps = 38/834 (4%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
+FGSRN R L++ +K+V IN +E M+KLSDEEL+ +T++ + + GE L++++P+AF
Sbjct: 1 VFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAF 60
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
+V REASKRV MRHFDVQL+GG+ L+ I+EM+TGEGKTL ATL AYLN+L+G+GVH+
Sbjct: 61 AVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHV 120
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLR 186
VT++DYLA+RDAE L+ +LGL++G+N + K+++Y ADITYGTNNE+GFDYLR
Sbjct: 121 VTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLR 180
Query: 187 DNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINPIPKLLV 246
DNM F+ +RVQRKL++ ARTPLIISG +++++ + ++ IP L+
Sbjct: 181 DNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240
Query: 247 PEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYENILIK------------- 293
E G + +D ++ QV LTE G E +L+K
Sbjct: 241 QE-------KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293
Query: 294 ----------MALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKE 343
ALRAH L VDE TGR M+ RRW++GLHQA+EAKE
Sbjct: 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 353
Query: 344 NLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRK 403
++IQNE QTLASITFQNYFR+Y+K++GMTGTA+TEA+EF IYKL+T+ VP N+ RK
Sbjct: 354 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 413
Query: 404 DLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463
DL D +Y T EK QAI+ DIK K QPVLVGT SIE SEL+SN L K + H+VLNA
Sbjct: 414 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 473
Query: 464 KQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXX 523
K H EA I+AQAG+P +TIATNMAGRGTDI+LGG+ + +
Sbjct: 474 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEV------AALENPTAEQIE 527
Query: 524 XXXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXX 583
W + HD V+ +GGLHIIGTERHESRRIDNQLRGRSGRQGD GSSR
Sbjct: 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587
Query: 584 XXXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQ 643
++ +M KL + G++IE + +I +AQRK+E RNFDIRKQLLEYDD+ N+Q
Sbjct: 588 RIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQ 647
Query: 644 RKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXX 703
R+ I +RN+LL+ ++SE I +R DV YI + ++ WDI GL+ LK +
Sbjct: 648 RRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFD 707
Query: 704 XXXXXXX--XXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYW 761
L + ++LQ++D W
Sbjct: 708 LDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLW 767
Query: 762 IEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
EHL ++D LRQGI+LR YAQKDPK+EYKRE+F +F ML +KYE I + +
Sbjct: 768 KEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKV 821
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/834 (45%), Positives = 500/834 (59%), Gaps = 38/834 (4%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
+FGSRN R L++ +K+V IN E +KLSDEEL+ +T++ + + GE L++++P+AF
Sbjct: 1 VFGSRNDRTLRRXRKVVNIINAXEPEXEKLSDEELKGKTAEFRARLEKGEVLENLIPEAF 60
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
+V REASKRV RHFDVQL+GG L+ I+E +TGEGKTL ATL AYLN+L+G+GVH+
Sbjct: 61 AVVREASKRVFGXRHFDVQLLGGXVLNERCIAEXRTGEGKTLTATLPAYLNALTGKGVHV 120
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLR 186
VT++DYLA+RDAE L+ +LGL++G+N K+++Y ADITYGTNNE+GFDYLR
Sbjct: 121 VTVNDYLAQRDAENNRPLFEFLGLTVGINLPGXPAPAKREAYAADITYGTNNEYGFDYLR 180
Query: 187 DNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINPIPKLLV 246
DN F+ +RVQRKL++ ARTPLIISG +++++ + ++ IP L+
Sbjct: 181 DNXAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEXYKRVNKIIPHLIR 240
Query: 247 PEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYENILIK------------- 293
E G + +D ++ QV LTE G E +L+K
Sbjct: 241 QE-------KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIXDEGESLYSP 293
Query: 294 ----------MALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKE 343
ALRAH L VDE TGR + RRW++GLHQA+EAKE
Sbjct: 294 ANIXLXHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTXQGRRWSDGLHQAVEAKE 353
Query: 344 NLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRK 403
++IQNE QTLASITFQNYFR+Y+K++G TGTA+TEA+EF IYKL+T+ VP N+ RK
Sbjct: 354 GVQIQNENQTLASITFQNYFRLYEKLAGXTGTADTEAFEFSSIYKLDTVVVPTNRPXIRK 413
Query: 404 DLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463
DL D +Y T EK QAI+ DIK K QPVLVGT SIE SEL+SN L K + H+VLNA
Sbjct: 414 DLPDLVYXTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 473
Query: 464 KQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXX 523
K H EA I+AQAG+P +TIATN AGRGTDI+LGG+ + +
Sbjct: 474 KFHANEAAIVAQAGYPAAVTIATNXAGRGTDIVLGGSWQAEV------AALENPTAEQIE 527
Query: 524 XXXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXX 583
W + HD V+ +GGLHIIGTERHESRRIDNQLRGRSGRQGD GSSR
Sbjct: 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSXEDALX 587
Query: 584 XXXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQ 643
++ KL G++IE + +I +AQRK+E RNFDIRKQLLEYDD+ N+Q
Sbjct: 588 RIFASDRVSGXXRKLGXKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQ 647
Query: 644 RKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXX 703
R+ I +RN+LL+ ++SE I +R DV YI + ++ WDI GL+ LK +
Sbjct: 648 RRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEXWDIPGLQERLKNDFD 707
Query: 704 XXXXXXX--XXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYW 761
L + + LQ++D W
Sbjct: 708 LDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEXXRHFEKGVXLQTLDSLW 767
Query: 762 IEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
EHL + D LRQGI+LR YAQKDPK+EYKRE+F F L +KYE I + +
Sbjct: 768 KEHLAAXDYLRQGIHLRGYAQKDPKQEYKRESFSXFAAXLESLKYEVISTLSKV 821
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 614 bits (1584), Expect = e-176, Method: Compositional matrix adjust.
Identities = 336/829 (40%), Positives = 474/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 2 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 61 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 121 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + Y N
Sbjct: 181 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK-LYVQANA 239
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 240 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 282
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 283 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 342
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 343 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 402
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 403 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 462
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 463 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 496
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 497 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 547
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 548 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 607
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 608 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 667
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 668 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 776
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 614 bits (1584), Expect = e-176, Method: Compositional matrix adjust.
Identities = 335/829 (40%), Positives = 475/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 2 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 61 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 121 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + + + N
Sbjct: 181 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA-NA 239
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 240 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 282
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 283 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 342
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 343 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 402
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 403 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 462
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 463 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 496
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 497 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 547
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 548 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 607
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 608 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 667
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 668 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 776
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 614 bits (1583), Expect = e-176, Method: Compositional matrix adjust.
Identities = 335/829 (40%), Positives = 475/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 5 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 63
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 64 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 123
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 183
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + + + N
Sbjct: 184 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA-NA 242
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 243 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 285
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 286 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 345
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 346 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 405
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 406 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 466 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 499
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 500 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 550
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 551 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 610
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 611 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 670
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 671 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 730
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 731 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 779
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 613 bits (1582), Expect = e-176, Method: Compositional matrix adjust.
Identities = 335/829 (40%), Positives = 475/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 2 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 61 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 121 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + + + N
Sbjct: 181 GFDYLRDNMVLYKEQMVQRPLHFAVIDQVDSILIDEARTPLIISGQAAKSTKLYVQA-NA 239
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 240 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 282
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 283 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 342
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 343 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 402
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 403 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 462
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 463 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 496
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 497 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 547
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 548 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 607
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 608 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 667
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 668 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 776
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 613 bits (1582), Expect = e-176, Method: Compositional matrix adjust.
Identities = 335/829 (40%), Positives = 475/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 2 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 61 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 121 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + + + N
Sbjct: 181 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA-NA 239
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 240 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 282
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 283 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 342
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 343 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 402
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 403 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 462
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 463 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 496
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 497 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 547
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 548 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 607
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 608 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 667
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 668 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 776
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 612 bits (1579), Expect = e-175, Method: Compositional matrix adjust.
Identities = 335/829 (40%), Positives = 475/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 5 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 63
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 64 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 123
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 183
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + + + N
Sbjct: 184 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA-NA 242
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 243 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 285
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 286 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 345
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 346 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 405
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 406 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 466 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 499
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 500 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 550
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 551 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 610
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 611 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 670
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 671 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 730
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 731 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 779
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 334/829 (40%), Positives = 475/829 (57%), Gaps = 70/829 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 2 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 61 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 121 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ARTPLIISG+ + + + + N
Sbjct: 181 GFDYLRDNMVLYKEQMVQRPLHFAVIDQVDSILIDEARTPLIISGQAAKSTKLYVQA-NA 239
Query: 241 IPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYE------------ 288
+ L E DY D +T V LTE G K E
Sbjct: 240 FVRTLKAEK-----------------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 282
Query: 289 ----NILIKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKEN 344
N I AL+AHV VD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 283 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 342
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 343 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 402
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 403 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 462
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXX 524
H+ EAQII +AG +TIATNMAG+GTDI LG
Sbjct: 463 NHEREAQIIEEAGQKGAVTIATNMAGKGTDIKLG-------------------------- 496
Query: 525 XXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXX 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++
Sbjct: 497 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 547
Query: 585 XXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
+ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 548 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 607
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXX 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++
Sbjct: 608 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 667
Query: 705 XXXXXXXXXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEH 764
+ + I+L+++D W++H
Sbjct: 668 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVM 776
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 550 bits (1417), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/714 (42%), Positives = 431/714 (60%), Gaps = 23/714 (3%)
Query: 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSI---HSGETL 58
L+K+ R++K+ +K+ + L ++KL+D EL+ +T + K+ + + ETL
Sbjct: 30 DILSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETL 89
Query: 59 DSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNS 118
D +LP+AF+V REA+ RVL R FDVQ++G ALH GN++EM+TGEGKTL L AYLN+
Sbjct: 90 DDLLPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNA 149
Query: 119 LSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNN 178
L+G GVHIVT++DYLAKRD+EWM ++ +LGL +GV + ++ ++ +Y ADITYGTNN
Sbjct: 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNN 209
Query: 179 EFGFDYLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKII 238
EFGFDYLRDNM + +D VQR ++ ARTPLIISG + ++ +
Sbjct: 210 EFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFA 269
Query: 239 NPIPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYENILIKM---A 295
P L+ + G +++ +Q+ + +N YE + L+ A
Sbjct: 270 RLAP-LMEKDVHYEVDLRKRTVGVHEKG---VEFVEDQLGI-DNLYEAANSPLVSYLNNA 324
Query: 296 LRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLA 355
L+A L VDEFTGR++ RR+ EG+HQA+EAKE++EI+ E QTLA
Sbjct: 325 LKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLA 384
Query: 356 SITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEE 415
+IT QNYFR+Y K++GMTGTA+TEA E EIYKL +++P N R+D D IYKT E
Sbjct: 385 TITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEA 444
Query: 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ 475
KY A++ D+ Y K QPVL+GTTS+E SE LS K +PH+VLNAK H+ EA IIA
Sbjct: 445 KYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAV 504
Query: 476 AGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXXXXXXWMLL--- 532
AG +T+ATNMAGRGTDI+LGGN+D ++ D L
Sbjct: 505 AGRRGGVTVATNMAGRGTDIVLGGNVD-FLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563
Query: 533 -------HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXXX 585
+VI +GGL+++GTERHESRRIDNQLRGRSGRQGDPG SR
Sbjct: 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRR 623
Query: 586 XXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRK 645
++ ++ +L +P IE+ + + +I+SAQ ++E +NF++RK +L+YD++ N QRK
Sbjct: 624 FNGAALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRK 683
Query: 646 IICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILK 699
+I ER ++LE +N+ + + DV I + + + ++WD+ L LK
Sbjct: 684 VIYAERRRILEGENLKDQALDMVRDV-ITAYVDGATGEGYAEDWDLDALWTALK 736
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 750 RNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAI 809
RN++L ID+ W EHL +D L++GI LR+ AQ+DP EY+RE + +F ML+ +K E++
Sbjct: 798 RNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMFMAMLDGMKEESV 857
Query: 810 KKIMTI 815
+ +
Sbjct: 858 GFLFNV 863
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 334/866 (38%), Positives = 461/866 (53%), Gaps = 130/866 (15%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
I +N+R+LKKY K+V KIN++ES ++ + EL + LK+ ++S E D L +AF
Sbjct: 2 ILFDKNKRILKKYAKMVSKINQIESDLRSKKNSELIRLSMVLKEKVNSFEDADEHLFEAF 61
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
++ REA++R L MR FDVQ++GGIALH G ++EM+TGEGKTL AT+ YLN+L G+GVH+
Sbjct: 62 ALVREAARRTLGMRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHL 121
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSS----------------------------- 157
VT++DYLA+RDA WM +Y +LGL +GV +S
Sbjct: 122 VTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDG 181
Query: 158 ---------------------EISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDR 196
E+ +K++Y D+TYGTNNEFGFDYLRDN+V + ND+
Sbjct: 182 FNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDK 241
Query: 197 VQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINPIPKLLVPEXXXXXXXX 256
VQR + ARTPLIISG K + Y+ I K V +
Sbjct: 242 VQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPS-VYRRFAQIAKKFVKDK------- 293
Query: 257 XXXXXXXXXGDYIIDYETNQVFLTENGYEKYENIL----------------IKMALRAHV 300
D+ +D + + LTE G K E I+ + AL+A
Sbjct: 294 ----------DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALH 343
Query: 301 LXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQ 360
L VDEFTGRL+ RR++ GLHQA+EAKE + I+ E+ T A+ITFQ
Sbjct: 344 LFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQ 403
Query: 361 NYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAI 420
NYFRMY+K++GMTGTA+TE EF ++Y +E + +P +K RKD D +++T +EKY+ I
Sbjct: 404 NYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKI 463
Query: 421 LMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK 480
+ +I+ Y K QPVLVGTTSIE SELLS++LKK +PH VLNAK H+ EA+I+A+AG
Sbjct: 464 VEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG 523
Query: 481 MITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXXXXXXWMLLHDKVISSG 540
M+TIATNMAGRGTDI LG V G
Sbjct: 524 MVTIATNMAGRGTDIKLGPG-----------------------------------VAELG 548
Query: 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXXXXXXXQIKIVMEKLKI 600
GL IIGTERHESRRIDNQLRGR+GRQGDPG S QI VM LKI
Sbjct: 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608
Query: 601 PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNI 660
+G+ I+ + S IE+ Q+K+E NF IRK L+E DD+ + QR+ + R+++L K+
Sbjct: 609 EEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLEKDY 668
Query: 661 SEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXXXXXXXXXXXXXXXXXX 720
E +K + DV+ ++ S K WDI L K
Sbjct: 669 DEYLKDIFEDVVSTRVEEFC----SGKNWDIESL-----KNSLSFFPAGLFDLDEKQFSS 719
Query: 721 XXXXXLYTFDX--XXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEHLLSLDQLRQGINLR 778
Y F+ R ++L+ ID +W +L ++ +++ + LR
Sbjct: 720 SEELHDYLFNRLWEEYQRKKQEIGEDYRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLR 779
Query: 779 SYAQKDPKREYKREAFKLFHKMLNLI 804
SY QKDP E+K+E + +F +M+ I
Sbjct: 780 SYGQKDPIVEFKKETYYMFDEMMRRI 805
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 334/866 (38%), Positives = 461/866 (53%), Gaps = 130/866 (15%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
I +N+R+LKKY K+V KIN++ES ++ + EL + LK+ ++S E D L +AF
Sbjct: 2 ILFDKNKRILKKYAKMVSKINQIESDLRSKKNSELIRLSMVLKEKVNSFEDADEHLFEAF 61
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
++ REA++R L MR FDVQ++GGIALH G ++EM+TGEGKTL AT+ YLN+L G+GVH+
Sbjct: 62 ALVREAARRTLGMRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHL 121
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSS----------------------------- 157
VT++DYLA+RDA WM +Y +LGL +GV +S
Sbjct: 122 VTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDG 181
Query: 158 ---------------------EISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDR 196
E+ +K++Y D+TYGTNNEFGFDYLRDN+V + ND+
Sbjct: 182 FNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDK 241
Query: 197 VQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINPIPKLLVPEXXXXXXXX 256
VQR + ARTPLIISG K + Y+ I K V +
Sbjct: 242 VQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPS-VYRRFAQIAKKFVKDK------- 293
Query: 257 XXXXXXXXXGDYIIDYETNQVFLTENGYEKYENIL----------------IKMALRAHV 300
D+ +D + + LTE G K E I+ + AL+A
Sbjct: 294 ----------DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALH 343
Query: 301 LXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQ 360
L VDEFTGRL+ RR++ GLHQA+EAKE + I+ E+ T A+ITFQ
Sbjct: 344 LFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQ 403
Query: 361 NYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAI 420
NYFRMY+K++GMTGTA+TE EF ++Y +E + +P +K RKD D +++T +EKY+ I
Sbjct: 404 NYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKI 463
Query: 421 LMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK 480
+ +I+ Y K QPVLVGTTSIE SELLS++LKK +PH VLNAK H+ EA+I+A+AG
Sbjct: 464 VEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG 523
Query: 481 MITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXXXXXXXXXXWMLLHDKVISSG 540
M+TIATNMAGRGTDI LG V G
Sbjct: 524 MVTIATNMAGRGTDIKLGPG-----------------------------------VAELG 548
Query: 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXXXXXXXQIKIVMEKLKI 600
GL IIGTERHESRRIDNQLRGR+GRQGDPG S QI VM LKI
Sbjct: 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608
Query: 601 PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNI 660
+G+ I+ + S IE+ Q+K+E NF IRK L+E DD+ + QR+ + R+++L K+
Sbjct: 609 EEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLEKDY 668
Query: 661 SEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXXXXXXXXXXXXXXXXXX 720
E +K + DV+ ++ S K WDI L K
Sbjct: 669 DEYLKDIFEDVVSTRVEEFC----SGKNWDIESL-----KNSLSFFPAGLFDLDEKQFSS 719
Query: 721 XXXXXLYTFDX--XXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEHLLSLDQLRQGINLR 778
Y F+ R ++L+ ID +W +L ++ +++ + LR
Sbjct: 720 SEELHDYLFNRLWEEYQRKKQEIGEDYRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLR 779
Query: 779 SYAQKDPKREYKREAFKLFHKMLNLI 804
SY QKDP E+K+E + +F +M+ I
Sbjct: 780 SYGQKDPIVEFKKETYYMFDEMMRRI 805
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/475 (43%), Positives = 286/475 (60%), Gaps = 27/475 (5%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L ++F + + + + Y+++V+ +N LE+ ++KL D L +LK+ G +LD
Sbjct: 2 LGLLRRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPD--LAAAYRELKEKHEKGASLDE 59
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+LP AF++ RE++KR L MRHFDVQLIGG LH G I+EM+TGEGKTLVATLA LN+L+
Sbjct: 60 LLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALT 119
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT++DYLA+RDAEWM +Y LGLS+GV + + ++K+Y AD+TY TN+E
Sbjct: 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSEL 179
Query: 181 GFDYLRDNMVFNSNDRVQR---KLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKI 237
GFDYLRDNM + + V R L++ ARTPLIISG + +YK+
Sbjct: 180 GFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKM 239
Query: 238 INPIPKLLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYENIL------ 291
KL GDY ++ + V LT G K E +L
Sbjct: 240 AEIAKKL------ERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF 293
Query: 292 ----------IKMALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALEA 341
+ A+RA L VDEFTGRLM RR+ EGLHQA+EA
Sbjct: 294 SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEA 353
Query: 342 KENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINK 401
KE + I+ E QTLA+IT+QN+FR+Y+K +GMTGTA+TE EFQEIY ++ + VP N+
Sbjct: 354 KEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVI 413
Query: 402 RKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNL 456
RKD D +Y+T + K+ A++ +I Y + QPVLVGT SIE SE LS +LK+ L
Sbjct: 414 RKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRL 468
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 145/279 (51%), Gaps = 2/279 (0%)
Query: 534 DKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXXXXXXXXXXXQIKI 593
++V + GGL IIGTERHESRRIDNQLRGR+GRQGDPG SR ++
Sbjct: 653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIA 712
Query: 594 VMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNK 653
+++++ + IE + + SIE AQ+++E RNF IRKQLL++DD+ + QR++I +R
Sbjct: 713 MLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRL 772
Query: 654 LLESKN--ISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEXXXXXXXXXX 711
+L K+ + E + + + L +++ + ++WD+ GL+ L
Sbjct: 773 ILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFA 832
Query: 712 XXXXXXXXXXXXXXLYTFDXXXXXXXXXXXXXXXXXXXRNIILQSIDKYWIEHLLSLDQL 771
+ R +IL +D W EHL +LD L
Sbjct: 833 ELRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVL 892
Query: 772 RQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIK 810
RQGI LR Y QKDP +EYK EA +LF++M+ IK E K
Sbjct: 893 RQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAK 931
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 453 KNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGN 500
+ +PH VLNAK H EA+I+AQAG K +TIATNMAGRGTDI LGGN
Sbjct: 541 RQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGN 588
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
pdb|3BXZ|B Chain B, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
Length = 471
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/234 (59%), Positives = 164/234 (70%), Gaps = 6/234 (2%)
Query: 340 EAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKI 399
EA+ L I QTLASITFQNYFR+Y+K++GMTGTA+TEA+EF IYKL+T+ VP N+
Sbjct: 220 EARTPLIISGANQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRP 279
Query: 400 NKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459
RKDL D +Y T EK QAI+ DIK K QPVLVGT SIE SEL+SN L K + H+
Sbjct: 280 MIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 339
Query: 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXX 519
VLNAK H EA I+AQAG+P +TIATNMAGRGTDI+LGG+ + +
Sbjct: 340 VLNAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEV------AALENPTA 393
Query: 520 XXXXXXXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSR 573
W + HD V+ +GGLHIIGTERHESRRIDNQLRGRSGRQGD GSSR
Sbjct: 394 EQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 447
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 124/222 (55%), Positives = 169/222 (76%)
Query: 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILP 63
LTK+FGSRN R L++ +K+V IN +E M+KLSDEEL+ +T++ + + GE L++++P
Sbjct: 8 LTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIP 67
Query: 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQG 123
+AF+V REASKRV MRHFDVQL+GG+ L+ I+EM+TGEGKTL ATL AYLN+L+G+G
Sbjct: 68 EAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKG 127
Query: 124 VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFD 183
VH+VT++DYLA+RDAE L+ +LGL++G+N + K+++Y ADITYGTNNE+GFD
Sbjct: 128 VHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFD 187
Query: 184 YLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISG 225
YLRDNM F+ +RVQRKL++ ARTPLIISG
Sbjct: 188 YLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 229
>pdb|2H0L|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 424 IKNCYIKE-----QPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH 478
IK Y +E + +VG TS E+L +L+ N P + ++ Q +L+AQ + QAG
Sbjct: 122 IKQAYEEEYGSNLEDDVVGDTSGYYQEMLVVLLQANRDPDTAIDDAQVELDAQALFQAGE 181
Query: 479 PK 480
K
Sbjct: 182 LK 183
>pdb|1N42|A Chain A, Crystal Structure Of Annexin V R149e Mutant
Length = 319
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 424 IKNCYIKE-----QPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH 478
IK Y +E + +VG TS E+L +L+ N P + ++ Q +L+AQ + QAG
Sbjct: 123 IKQAYEEEYGSNLEDDVVGDTSGYYQEMLVVLLQANRDPDTAIDDAQVELDAQALFQAGE 182
Query: 479 PK 480
K
Sbjct: 183 LK 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,295,519
Number of Sequences: 62578
Number of extensions: 688916
Number of successful extensions: 2199
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 55
length of query: 816
length of database: 14,973,337
effective HSP length: 107
effective length of query: 709
effective length of database: 8,277,491
effective search space: 5868741119
effective search space used: 5868741119
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)