Query psy2371
Match_columns 816
No_of_seqs 378 out of 2479
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:15:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12902 secA preprotein trans 100.0 2E-220 3E-225 1901.4 83.6 800 4-815 2-927 (939)
2 PRK12901 secA preprotein trans 100.0 1E-218 3E-223 1897.9 75.4 772 2-815 3-1017(1112)
3 PRK12903 secA preprotein trans 100.0 4E-217 8E-222 1866.9 77.9 750 5-815 4-778 (925)
4 PRK13103 secA preprotein trans 100.0 1E-215 2E-220 1873.4 82.6 800 3-815 5-829 (913)
5 PRK13107 preprotein translocas 100.0 4E-213 1E-217 1850.1 84.5 800 3-815 5-829 (908)
6 PRK13104 secA preprotein trans 100.0 8E-213 2E-217 1853.6 84.6 796 3-815 5-825 (896)
7 CHL00122 secA preprotein trans 100.0 8E-213 2E-217 1842.1 81.2 789 4-815 2-867 (870)
8 PRK12904 preprotein translocas 100.0 2E-210 4E-215 1833.1 84.6 791 1-815 2-809 (830)
9 PRK12900 secA preprotein trans 100.0 3E-209 6E-214 1821.8 77.1 773 1-815 2-941 (1025)
10 PRK12906 secA preprotein trans 100.0 3E-204 7E-209 1774.3 79.0 768 1-815 2-790 (796)
11 PRK12326 preprotein translocas 100.0 4E-203 1E-207 1731.9 72.0 699 2-815 3-718 (764)
12 COG0653 SecA Preprotein transl 100.0 9E-204 2E-208 1758.3 64.2 763 1-815 2-780 (822)
13 PRK12899 secA preprotein trans 100.0 7E-198 1E-202 1722.9 80.0 777 1-815 2-928 (970)
14 TIGR00963 secA preprotein tran 100.0 9E-194 2E-198 1673.9 74.2 723 26-804 1-745 (745)
15 PRK09200 preprotein translocas 100.0 1E-191 3E-196 1677.9 81.0 751 4-815 2-775 (790)
16 TIGR03714 secA2 accessory Sec 100.0 6E-189 1E-193 1642.0 79.2 732 12-805 2-762 (762)
17 PRK12898 secA preprotein trans 100.0 3E-154 6E-159 1336.8 59.5 577 11-642 33-647 (656)
18 PF07517 SecA_DEAD: SecA DEAD- 100.0 2.7E-74 5.9E-79 609.8 19.0 266 4-384 1-266 (266)
19 KOG0330|consensus 100.0 3.6E-50 7.7E-55 430.1 26.6 332 61-580 68-408 (476)
20 KOG0331|consensus 100.0 1.5E-49 3.3E-54 448.1 28.7 336 63-582 100-451 (519)
21 PF07516 SecA_SW: SecA Wing an 100.0 1.5E-47 3.2E-52 396.3 27.4 211 605-815 1-212 (214)
22 KOG0333|consensus 100.0 1E-47 2.2E-52 422.5 24.3 350 62-580 253-625 (673)
23 COG0513 SrmB Superfamily II DN 100.0 4.9E-47 1.1E-51 438.2 29.3 330 61-579 36-380 (513)
24 KOG0340|consensus 100.0 2.1E-46 4.5E-51 397.4 26.8 377 75-632 23-415 (442)
25 KOG0338|consensus 100.0 3.3E-45 7.2E-50 401.2 28.5 324 76-580 198-534 (691)
26 KOG0342|consensus 100.0 1.1E-43 2.3E-48 389.8 31.1 337 63-583 91-441 (543)
27 KOG0336|consensus 100.0 4.3E-44 9.2E-49 383.9 25.4 388 21-598 171-587 (629)
28 KOG0345|consensus 100.0 2.2E-43 4.8E-48 385.0 26.5 333 61-580 13-365 (567)
29 KOG0343|consensus 100.0 5.8E-42 1.2E-46 378.5 30.1 331 64-580 79-423 (758)
30 PTZ00110 helicase; Provisional 100.0 1.7E-41 3.7E-46 395.0 31.7 366 31-581 98-486 (545)
31 KOG0328|consensus 100.0 2.4E-42 5.3E-47 357.1 20.5 329 63-580 36-374 (400)
32 KOG0347|consensus 100.0 8.1E-43 1.7E-47 385.3 16.7 369 80-621 203-604 (731)
33 PRK04837 ATP-dependent RNA hel 100.0 5E-41 1.1E-45 379.8 30.7 322 77-581 26-364 (423)
34 PRK11634 ATP-dependent RNA hel 100.0 2.6E-40 5.7E-45 389.7 31.9 320 77-581 24-354 (629)
35 KOG0335|consensus 100.0 6.9E-41 1.5E-45 372.8 25.2 327 73-577 89-442 (482)
36 KOG0341|consensus 100.0 1.9E-41 4.1E-46 361.5 15.6 315 79-579 191-528 (610)
37 PRK10590 ATP-dependent RNA hel 100.0 9.6E-40 2.1E-44 373.0 29.2 320 77-581 19-354 (456)
38 PRK11776 ATP-dependent RNA hel 100.0 1.3E-39 2.8E-44 371.9 29.8 318 77-580 22-350 (460)
39 PLN00206 DEAD-box ATP-dependen 100.0 9.1E-40 2E-44 378.7 28.7 321 77-581 139-477 (518)
40 PRK04537 ATP-dependent RNA hel 100.0 2.6E-39 5.7E-44 378.3 29.2 322 77-580 27-365 (572)
41 PRK11192 ATP-dependent RNA hel 100.0 1.5E-38 3.3E-43 360.4 30.4 320 77-581 19-354 (434)
42 KOG0339|consensus 100.0 2.1E-38 4.5E-43 347.4 28.2 373 31-593 192-586 (731)
43 KOG0326|consensus 100.0 3.3E-39 7.1E-44 338.3 19.9 337 55-582 84-432 (459)
44 KOG0334|consensus 100.0 1.1E-37 2.3E-42 367.2 25.1 325 76-580 382-721 (997)
45 KOG0348|consensus 100.0 1.5E-37 3.2E-42 342.9 21.2 360 76-580 154-555 (708)
46 PRK01297 ATP-dependent RNA hel 100.0 1.3E-36 2.8E-41 348.8 30.0 322 77-581 105-444 (475)
47 KOG0346|consensus 100.0 4.6E-35 1E-39 317.6 29.5 373 63-596 28-423 (569)
48 KOG0332|consensus 100.0 3.4E-35 7.4E-40 313.6 22.6 333 61-581 97-445 (477)
49 PTZ00424 helicase 45; Provisio 100.0 1.3E-34 2.7E-39 323.9 28.3 319 77-580 46-375 (401)
50 TIGR03817 DECH_helic helicase/ 100.0 1.2E-34 2.6E-39 347.6 24.4 336 77-577 32-384 (742)
51 KOG0327|consensus 100.0 4.3E-34 9.2E-39 307.6 19.8 315 80-581 48-372 (397)
52 KOG0337|consensus 100.0 9.4E-34 2E-38 306.3 21.3 333 61-581 28-370 (529)
53 KOG0350|consensus 100.0 2E-33 4.4E-38 308.7 22.8 353 80-600 159-554 (620)
54 KOG4284|consensus 100.0 6.2E-34 1.3E-38 318.7 18.8 342 63-582 27-382 (980)
55 TIGR00614 recQ_fam ATP-depende 100.0 1E-32 2.2E-37 316.4 27.8 320 74-581 4-335 (470)
56 KOG0344|consensus 100.0 3.4E-33 7.4E-38 313.2 18.7 321 80-580 158-496 (593)
57 PRK11057 ATP-dependent DNA hel 100.0 2.9E-31 6.3E-36 313.0 32.6 317 70-580 14-344 (607)
58 PLN03137 ATP-dependent DNA hel 100.0 2E-31 4.4E-36 321.1 28.5 328 68-581 447-789 (1195)
59 PRK10917 ATP-dependent DNA hel 100.0 1.3E-30 2.9E-35 310.8 26.8 308 72-577 253-587 (681)
60 TIGR00580 mfd transcription-re 100.0 5.4E-30 1.2E-34 311.4 32.1 309 73-581 444-772 (926)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.2E-30 6.9E-35 306.8 28.2 333 76-592 11-407 (844)
62 PRK13767 ATP-dependent helicas 100.0 4.9E-30 1.1E-34 313.1 28.8 336 80-584 32-403 (876)
63 TIGR01389 recQ ATP-dependent D 100.0 3.7E-30 8E-35 303.0 26.7 321 70-581 2-333 (591)
64 TIGR00643 recG ATP-dependent D 100.0 1.1E-29 2.4E-34 300.8 26.7 309 73-576 228-563 (630)
65 PRK10689 transcription-repair 100.0 4.1E-29 8.8E-34 309.5 31.4 305 74-578 594-918 (1147)
66 KOG0329|consensus 100.0 1E-30 2.2E-35 267.7 14.1 299 62-581 50-357 (387)
67 PRK02362 ski2-like helicase; P 100.0 6E-28 1.3E-32 290.9 28.2 325 77-581 19-399 (737)
68 PRK14701 reverse gyrase; Provi 100.0 2.6E-28 5.7E-33 308.8 25.3 345 64-573 63-450 (1638)
69 PHA02653 RNA helicase NPH-II; 100.0 2.7E-27 5.9E-32 279.6 29.9 358 83-627 167-567 (675)
70 PRK09401 reverse gyrase; Revie 100.0 1E-27 2.2E-32 297.7 26.2 329 66-564 66-429 (1176)
71 PRK00254 ski2-like helicase; P 100.0 4E-27 8.6E-32 283.2 24.2 131 77-217 19-154 (720)
72 PRK01172 ski2-like helicase; P 99.9 1.1E-26 2.3E-31 277.7 23.8 132 77-218 19-152 (674)
73 PHA02558 uvsW UvsW helicase; P 99.9 4E-26 8.7E-31 264.0 22.9 337 79-582 113-455 (501)
74 PRK09751 putative ATP-dependen 99.9 4.9E-26 1.1E-30 284.2 24.7 326 99-584 2-390 (1490)
75 TIGR01054 rgy reverse gyrase. 99.9 6.2E-25 1.3E-29 273.3 27.7 135 71-217 69-215 (1171)
76 TIGR01587 cas3_core CRISPR-ass 99.9 3.4E-25 7.4E-30 244.7 20.7 104 429-578 220-334 (358)
77 PRK11664 ATP-dependent RNA hel 99.9 2.6E-24 5.6E-29 259.9 24.8 289 97-580 24-340 (812)
78 TIGR01970 DEAH_box_HrpB ATP-de 99.9 5.7E-24 1.2E-28 256.6 26.5 293 97-580 21-337 (819)
79 PRK13766 Hef nuclease; Provisi 99.9 6.7E-24 1.5E-28 257.2 26.7 127 79-213 14-144 (773)
80 PF01043 SecA_PP_bind: SecA pr 99.9 3E-25 6.5E-30 207.3 9.5 94 229-340 3-113 (113)
81 COG1201 Lhr Lhr-like helicases 99.9 4E-23 8.8E-28 245.3 27.0 338 68-584 11-367 (814)
82 TIGR03158 cas3_cyano CRISPR-as 99.9 2.8E-22 6.1E-27 222.8 23.5 123 85-212 2-157 (357)
83 COG0514 RecQ Superfamily II DN 99.9 1.3E-21 2.9E-26 225.5 26.8 319 72-582 8-340 (590)
84 PRK11131 ATP-dependent RNA hel 99.9 1.6E-21 3.4E-26 240.7 25.0 123 414-580 268-412 (1294)
85 COG1111 MPH1 ERCC4-like helica 99.9 2.7E-20 5.8E-25 207.4 25.8 417 80-579 15-481 (542)
86 PRK05580 primosome assembly pr 99.9 3.6E-20 7.8E-25 221.3 26.9 119 78-213 142-271 (679)
87 COG1202 Superfamily II helicas 99.8 2.8E-20 6.1E-25 208.0 19.9 333 58-578 196-552 (830)
88 PRK04914 ATP-dependent helicas 99.8 7.3E-19 1.6E-23 214.3 33.4 119 414-577 478-601 (956)
89 TIGR00603 rad25 DNA repair hel 99.8 5.7E-20 1.2E-24 217.6 21.8 328 81-572 256-593 (732)
90 TIGR01967 DEAH_box_HrpA ATP-de 99.8 9.7E-20 2.1E-24 225.6 20.6 122 415-580 262-405 (1283)
91 COG1205 Distinct helicase fami 99.8 3.8E-19 8.1E-24 215.8 21.6 330 70-577 60-420 (851)
92 TIGR00595 priA primosomal prot 99.8 1.2E-18 2.6E-23 201.7 23.8 101 98-216 2-109 (505)
93 PRK09694 helicase Cas3; Provis 99.8 7.5E-18 1.6E-22 204.2 26.7 327 78-569 284-665 (878)
94 COG1200 RecG RecG-like helicas 99.8 1.6E-17 3.5E-22 191.9 24.3 269 74-496 256-550 (677)
95 KOG0349|consensus 99.8 1.4E-17 2.9E-22 181.4 16.5 302 123-579 288-615 (725)
96 KOG0352|consensus 99.7 3.1E-16 6.7E-21 171.0 22.4 332 68-583 6-366 (641)
97 COG1204 Superfamily II helicas 99.7 1.2E-16 2.6E-21 191.9 21.3 130 81-220 32-165 (766)
98 PRK05298 excinuclease ABC subu 99.7 2.9E-15 6.2E-20 178.7 30.5 128 414-585 429-563 (652)
99 TIGR00631 uvrb excinuclease AB 99.7 1.7E-15 3.6E-20 180.1 27.5 129 413-585 424-559 (655)
100 PRK11448 hsdR type I restricti 99.7 8.9E-16 1.9E-20 190.9 25.4 372 79-575 412-810 (1123)
101 COG1061 SSL2 DNA or RNA helica 99.7 3.7E-16 8.1E-21 178.6 20.2 354 76-586 32-399 (442)
102 KOG0351|consensus 99.7 3.4E-16 7.3E-21 189.9 20.6 319 74-580 257-593 (941)
103 TIGR01407 dinG_rel DnaQ family 99.7 6.4E-15 1.4E-19 180.8 26.5 81 77-157 242-331 (850)
104 cd00268 DEADc DEAD-box helicas 99.7 1.7E-15 3.7E-20 153.9 16.3 166 77-291 17-192 (203)
105 KOG0952|consensus 99.7 5.8E-15 1.2E-19 174.9 22.0 128 82-216 112-253 (1230)
106 PF00270 DEAD: DEAD/DEAH box h 99.6 2.9E-15 6.2E-20 146.9 14.2 126 82-214 1-133 (169)
107 KOG0354|consensus 99.6 1.8E-13 3.9E-18 160.6 23.7 126 80-213 62-192 (746)
108 PRK07246 bifunctional ATP-depe 99.5 9.1E-13 2E-17 160.7 26.4 80 77-157 242-328 (820)
109 cd00079 HELICc Helicase superf 99.5 5.9E-14 1.3E-18 131.2 12.5 122 411-575 8-131 (131)
110 COG4098 comFA Superfamily II D 99.5 8.9E-13 1.9E-17 141.6 22.2 296 80-576 97-413 (441)
111 COG1197 Mfd Transcription-repa 99.5 5.5E-12 1.2E-16 153.4 28.4 332 52-592 571-925 (1139)
112 COG1110 Reverse gyrase [DNA re 99.4 2.1E-10 4.6E-15 136.9 27.5 139 66-213 68-216 (1187)
113 COG1203 CRISPR-associated heli 99.3 2.2E-11 4.7E-16 147.5 19.5 110 421-576 430-547 (733)
114 PLN03142 Probable chromatin-re 99.3 4.8E-11 1E-15 147.1 22.6 118 413-573 469-591 (1033)
115 KOG0353|consensus 99.3 3E-11 6.5E-16 130.5 18.1 312 80-580 94-468 (695)
116 PRK08074 bifunctional ATP-depe 99.2 2.6E-09 5.6E-14 132.7 30.2 199 360-571 666-886 (928)
117 KOG0951|consensus 99.2 4E-10 8.7E-15 136.0 19.3 123 83-211 312-448 (1674)
118 COG1643 HrpA HrpA-like helicas 99.2 6.3E-10 1.4E-14 134.5 21.1 104 97-214 69-176 (845)
119 COG4581 Superfamily II RNA hel 99.2 3.5E-10 7.6E-15 137.8 17.5 131 75-218 114-246 (1041)
120 smart00487 DEXDc DEAD-like hel 99.2 4E-10 8.7E-15 110.9 14.0 129 78-213 6-142 (201)
121 PF00271 Helicase_C: Helicase 99.1 1E-10 2.2E-15 101.4 7.4 76 449-567 1-78 (78)
122 COG0556 UvrB Helicase subunit 99.1 1.8E-08 3.9E-13 114.1 26.4 173 357-576 377-554 (663)
123 cd00046 DEXDc DEAD-like helica 99.1 6.5E-10 1.4E-14 103.1 12.0 112 95-214 2-117 (144)
124 PRK11747 dinG ATP-dependent DN 99.1 1.2E-08 2.6E-13 123.2 23.6 197 360-571 450-667 (697)
125 TIGR03117 cas_csf4 CRISPR-asso 99.1 1.6E-08 3.5E-13 119.8 23.1 60 97-156 20-84 (636)
126 TIGR00348 hsdR type I site-spe 99.0 8.6E-09 1.9E-13 123.9 21.1 107 97-213 267-378 (667)
127 KOG0923|consensus 99.0 3E-08 6.4E-13 114.2 20.7 123 70-211 257-389 (902)
128 KOG0922|consensus 99.0 1.3E-08 2.9E-13 117.9 17.5 96 97-211 70-174 (674)
129 COG1198 PriA Primosomal protei 98.9 5.7E-08 1.2E-12 116.3 21.0 114 81-211 199-324 (730)
130 smart00490 HELICc helicase sup 98.9 4.5E-09 9.7E-14 90.1 7.4 79 446-567 2-82 (82)
131 KOG0948|consensus 98.9 1.1E-08 2.4E-13 118.9 12.6 119 82-218 131-252 (1041)
132 KOG0950|consensus 98.8 6.3E-08 1.4E-12 115.7 17.8 142 69-218 211-358 (1008)
133 COG4096 HsdR Type I site-speci 98.8 1.4E-07 2.9E-12 112.0 20.2 121 81-213 166-298 (875)
134 KOG0947|consensus 98.7 3.2E-07 7E-12 109.3 16.8 127 75-218 292-420 (1248)
135 KOG0924|consensus 98.7 1.1E-06 2.4E-11 101.6 19.2 98 97-211 375-479 (1042)
136 COG1199 DinG Rad3-related DNA 98.6 4.1E-06 8.9E-11 100.8 22.5 69 76-144 11-86 (654)
137 KOG0920|consensus 98.6 1.1E-06 2.5E-11 106.7 17.3 102 97-213 192-300 (924)
138 PF04851 ResIII: Type III rest 98.5 1.3E-07 2.8E-12 93.4 6.8 134 79-215 2-161 (184)
139 KOG0925|consensus 98.5 7.8E-07 1.7E-11 99.9 11.5 107 383-495 206-329 (699)
140 PRK14873 primosome assembly pr 98.4 4.2E-05 9.1E-10 92.0 23.4 94 100-210 167-267 (665)
141 KOG0385|consensus 98.3 2.6E-05 5.6E-10 91.9 19.8 121 412-575 468-593 (971)
142 KOG0949|consensus 98.2 9.8E-06 2.1E-10 97.2 12.4 135 75-214 506-646 (1330)
143 KOG0387|consensus 98.2 0.00021 4.6E-09 84.8 22.2 123 410-575 525-652 (923)
144 KOG0389|consensus 98.0 0.00025 5.4E-09 84.2 19.8 117 414-573 760-880 (941)
145 KOG0926|consensus 98.0 0.00017 3.6E-09 85.6 17.2 112 80-211 244-383 (1172)
146 KOG1123|consensus 97.9 0.00012 2.7E-09 82.9 14.3 332 82-578 304-649 (776)
147 smart00489 DEXDc3 DEAD-like he 97.8 4.3E-05 9.4E-10 83.3 7.5 68 77-144 5-84 (289)
148 smart00488 DEXDc2 DEAD-like he 97.8 4.3E-05 9.4E-10 83.3 7.5 68 77-144 5-84 (289)
149 KOG0384|consensus 97.7 0.00068 1.5E-08 83.8 16.8 394 78-584 368-819 (1373)
150 KOG1000|consensus 97.6 0.0028 6.2E-08 72.2 17.8 116 414-572 471-594 (689)
151 KOG4150|consensus 97.4 0.00076 1.6E-08 77.5 10.3 119 416-578 510-639 (1034)
152 KOG0392|consensus 97.4 0.0055 1.2E-07 76.0 17.8 117 415-574 1310-1447(1549)
153 COG0553 HepA Superfamily II DN 97.3 0.011 2.3E-07 73.1 20.1 118 415-575 692-816 (866)
154 PF07652 Flavi_DEAD: Flaviviru 97.3 0.00074 1.6E-08 66.3 7.2 100 94-211 3-106 (148)
155 PF06862 DUF1253: Protein of u 97.2 0.02 4.4E-07 65.9 19.3 125 432-597 301-435 (442)
156 KOG0390|consensus 97.0 0.098 2.1E-06 63.8 23.4 116 413-574 576-700 (776)
157 KOG0953|consensus 97.0 0.022 4.9E-07 66.1 16.6 94 97-218 195-292 (700)
158 PF00176 SNF2_N: SNF2 family N 96.8 0.0019 4.1E-08 69.1 6.0 110 95-212 27-146 (299)
159 PF02399 Herpes_ori_bp: Origin 96.6 0.081 1.8E-06 64.5 18.3 64 429-496 280-343 (824)
160 PF13086 AAA_11: AAA domain; P 96.5 0.0071 1.5E-07 61.8 7.3 62 82-143 3-75 (236)
161 KOG0951|consensus 96.3 0.0055 1.2E-07 76.2 6.4 140 60-213 1123-1266(1674)
162 TIGR01073 pcrA ATP-dependent D 96.0 0.17 3.7E-06 62.2 17.3 106 80-212 4-115 (726)
163 TIGR01425 SRP54_euk signal rec 96.0 0.56 1.2E-05 54.2 20.0 112 64-183 73-197 (429)
164 TIGR01075 uvrD DNA helicase II 95.9 0.25 5.5E-06 60.6 18.2 106 80-212 4-115 (715)
165 PF09848 DUF2075: Uncharacteri 95.9 0.019 4.1E-07 64.3 7.6 49 97-145 5-55 (352)
166 PRK11773 uvrD DNA-dependent he 95.8 0.53 1.2E-05 58.0 20.4 106 80-212 9-120 (721)
167 KOG0386|consensus 95.7 0.22 4.8E-06 61.5 15.7 120 414-576 709-833 (1157)
168 TIGR00596 rad1 DNA repair prot 95.7 0.25 5.5E-06 61.2 16.7 73 165-245 2-89 (814)
169 TIGR00376 DNA helicase, putati 95.6 0.054 1.2E-06 65.5 10.6 63 80-142 157-222 (637)
170 KOG0349|consensus 95.5 0.0056 1.2E-07 68.7 1.4 53 61-117 9-63 (725)
171 PRK10416 signal recognition pa 95.3 0.76 1.7E-05 51.1 17.5 86 65-155 88-175 (318)
172 PRK12723 flagellar biosynthesi 95.3 0.26 5.7E-06 56.2 14.0 84 97-181 178-267 (388)
173 COG0610 Type I site-specific r 95.3 0.067 1.5E-06 67.6 10.0 108 97-212 277-388 (962)
174 PF13245 AAA_19: Part of AAA d 95.2 0.047 1E-06 47.9 6.0 45 97-141 14-62 (76)
175 PF00580 UvrD-helicase: UvrD/R 95.2 0.031 6.6E-07 60.1 5.8 119 82-211 2-126 (315)
176 KOG1803|consensus 95.1 0.04 8.7E-07 64.7 6.8 53 83-135 188-243 (649)
177 TIGR00064 ftsY signal recognit 95.0 0.93 2E-05 49.3 16.8 138 36-180 19-166 (272)
178 TIGR00959 ffh signal recogniti 95.0 0.77 1.7E-05 53.1 16.9 86 97-183 103-197 (428)
179 PRK10536 hypothetical protein; 94.9 0.062 1.3E-06 57.9 7.2 121 74-213 52-189 (262)
180 TIGR03499 FlhF flagellar biosy 94.9 0.39 8.6E-06 52.4 13.5 83 65-153 169-255 (282)
181 PRK10867 signal recognition pa 94.9 1.1 2.5E-05 51.9 17.7 112 65-181 74-196 (433)
182 PRK12726 flagellar biosynthesi 94.8 0.17 3.7E-06 57.5 10.6 82 94-181 205-298 (407)
183 PF13604 AAA_30: AAA domain; P 94.8 0.064 1.4E-06 55.3 6.8 59 82-140 3-65 (196)
184 KOG1802|consensus 94.7 0.13 2.9E-06 61.0 9.5 71 82-156 412-485 (935)
185 PF12340 DUF3638: Protein of u 94.7 0.13 2.8E-06 54.5 8.6 145 78-225 21-195 (229)
186 PRK00771 signal recognition pa 94.6 1.7 3.6E-05 50.6 18.1 56 97-153 99-154 (437)
187 PRK05703 flhF flagellar biosyn 94.6 0.53 1.1E-05 54.4 14.0 109 65-181 198-312 (424)
188 PF13401 AAA_22: AAA domain; P 94.5 0.025 5.4E-07 53.1 2.6 19 97-115 8-26 (131)
189 TIGR00604 rad3 DNA repair heli 94.4 0.087 1.9E-06 64.6 7.6 66 79-144 8-83 (705)
190 KOG1805|consensus 94.4 0.079 1.7E-06 65.1 7.0 130 80-224 669-820 (1100)
191 KOG2340|consensus 94.4 0.97 2.1E-05 52.8 15.1 139 413-596 532-687 (698)
192 PRK15483 type III restriction- 94.1 0.13 2.9E-06 64.2 8.4 43 97-139 63-107 (986)
193 PRK14974 cell division protein 93.6 3.2 7E-05 46.6 17.3 88 65-154 110-200 (336)
194 PF02562 PhoH: PhoH-like prote 93.5 0.13 2.9E-06 53.6 6.0 68 82-149 6-88 (205)
195 PRK14722 flhF flagellar biosyn 93.4 0.43 9.3E-06 54.2 10.2 88 93-181 135-228 (374)
196 PRK12724 flagellar biosynthesi 93.1 2.6 5.6E-05 48.8 15.8 83 97-180 227-311 (432)
197 TIGR01447 recD exodeoxyribonuc 92.4 0.35 7.5E-06 58.2 8.1 66 83-148 148-220 (586)
198 PRK10875 recD exonuclease V su 92.0 0.38 8.3E-06 58.1 7.9 69 82-150 154-228 (615)
199 PRK10919 ATP-dependent DNA hel 92.0 0.35 7.6E-06 59.1 7.6 109 79-212 1-114 (672)
200 COG3587 Restriction endonuclea 91.9 0.4 8.8E-06 58.5 7.7 133 82-215 56-220 (985)
201 KOG0952|consensus 91.9 0.23 4.9E-06 61.7 5.7 118 94-221 944-1065(1230)
202 COG4889 Predicted helicase [Ge 90.6 0.35 7.5E-06 59.1 5.4 77 79-159 160-243 (1518)
203 cd01124 KaiC KaiC is a circadi 90.6 0.73 1.6E-05 46.0 7.1 46 97-143 3-48 (187)
204 COG1474 CDC6 Cdc6-related prot 90.4 0.67 1.5E-05 52.6 7.4 90 97-214 46-137 (366)
205 TIGR01547 phage_term_2 phage t 89.7 0.67 1.5E-05 52.6 6.7 105 96-212 4-113 (396)
206 KOG1133|consensus 89.6 0.26 5.6E-06 58.9 3.3 42 77-119 12-59 (821)
207 PRK11889 flhF flagellar biosyn 89.5 4.4 9.5E-05 46.7 12.8 57 97-154 245-301 (436)
208 COG1875 NYN ribonuclease and A 89.4 0.53 1.2E-05 52.9 5.3 76 73-148 220-314 (436)
209 PRK04296 thymidine kinase; Pro 89.3 0.38 8.1E-06 49.3 3.9 33 97-129 6-38 (190)
210 PF00448 SRP54: SRP54-type pro 88.9 1.4 3E-05 45.6 7.7 84 97-181 5-96 (196)
211 smart00382 AAA ATPases associa 88.8 0.34 7.4E-06 44.2 2.9 38 97-134 6-43 (148)
212 TIGR03600 phage_DnaB phage rep 88.7 5.6 0.00012 45.8 13.3 145 57-212 152-317 (421)
213 TIGR00665 DnaB replicative DNA 88.7 8.5 0.00018 44.4 14.8 144 57-212 153-317 (434)
214 cd00009 AAA The AAA+ (ATPases 88.5 1 2.2E-05 41.6 6.0 37 97-133 23-59 (151)
215 TIGR01074 rep ATP-dependent DN 88.5 1.3 2.7E-05 54.0 8.3 106 81-212 2-113 (664)
216 PRK06995 flhF flagellar biosyn 88.5 5.6 0.00012 46.9 13.1 89 93-183 254-349 (484)
217 TIGR01448 recD_rel helicase, p 88.1 1.8 4E-05 53.4 9.3 64 76-140 319-387 (720)
218 cd03115 SRP The signal recogni 87.9 2.6 5.6E-05 41.9 8.8 56 97-153 4-59 (173)
219 PRK14723 flhF flagellar biosyn 87.8 4.2 9.2E-05 50.3 12.0 84 94-181 184-276 (767)
220 KOG0388|consensus 87.7 1.3 2.8E-05 53.3 7.2 122 410-574 1023-1147(1185)
221 cd01120 RecA-like_NTPases RecA 87.6 1.7 3.7E-05 41.4 7.1 39 97-135 3-41 (165)
222 KOG0989|consensus 87.6 0.58 1.3E-05 51.5 4.1 34 181-215 111-144 (346)
223 PRK11054 helD DNA helicase IV; 87.1 2.7 5.8E-05 51.6 9.9 88 79-188 195-286 (684)
224 TIGR02785 addA_Gpos recombinat 86.6 2.2 4.7E-05 55.8 9.2 121 81-211 2-126 (1232)
225 TIGR02768 TraA_Ti Ti-type conj 86.4 1.4 3E-05 54.6 7.0 61 78-138 350-413 (744)
226 cd01122 GP4d_helicase GP4d_hel 85.9 3.4 7.4E-05 44.2 8.9 113 92-213 27-153 (271)
227 KOG0391|consensus 85.7 3.6 7.7E-05 52.2 9.7 115 415-572 1260-1378(1958)
228 KOG1002|consensus 85.6 1.9 4E-05 50.1 6.8 115 414-570 619-738 (791)
229 COG3421 Uncharacterized protei 85.4 0.66 1.4E-05 54.9 3.2 112 98-213 2-125 (812)
230 COG0552 FtsY Signal recognitio 84.9 9.4 0.0002 42.8 11.7 83 97-180 143-233 (340)
231 COG1419 FlhF Flagellar GTP-bin 84.6 8.1 0.00018 44.4 11.4 83 97-180 207-293 (407)
232 PF14617 CMS1: U3-containing 9 84.0 1.5 3.2E-05 47.3 5.0 76 123-208 128-209 (252)
233 PRK12727 flagellar biosynthesi 83.7 15 0.00034 43.8 13.5 62 92-155 347-413 (559)
234 COG3972 Superfamily I DNA and 83.7 4.8 0.0001 47.1 9.0 145 63-212 147-307 (660)
235 PRK14721 flhF flagellar biosyn 83.6 9.9 0.00021 44.1 11.7 88 93-181 189-282 (420)
236 TIGR00604 rad3 DNA repair heli 83.3 12 0.00027 46.0 13.3 138 358-496 433-601 (705)
237 PF06745 KaiC: KaiC; InterPro 83.0 1.8 3.9E-05 45.1 5.1 63 77-142 3-68 (226)
238 PRK05748 replicative DNA helic 82.8 24 0.00052 41.1 14.7 111 92-211 200-325 (448)
239 PRK06067 flagellar accessory p 82.1 1.5 3.2E-05 46.1 4.1 54 77-132 9-64 (234)
240 cd00984 DnaB_C DnaB helicase C 81.6 4.7 0.0001 42.2 7.6 111 93-212 11-135 (242)
241 COG3973 Superfamily I DNA and 80.9 2.4 5.3E-05 50.5 5.5 50 97-150 230-285 (747)
242 TIGR03877 thermo_KaiC_1 KaiC d 80.5 2.5 5.4E-05 44.7 5.1 64 77-143 5-70 (237)
243 COG1444 Predicted P-loop ATPas 79.9 5.3 0.00012 49.2 8.2 61 97-157 235-297 (758)
244 TIGR00595 priA primosomal prot 79.3 6.3 0.00014 46.7 8.4 60 429-488 23-85 (505)
245 COG0541 Ffh Signal recognition 79.0 28 0.00061 40.4 13.0 82 98-182 105-196 (451)
246 PRK05595 replicative DNA helic 78.6 40 0.00087 39.2 14.6 111 92-211 198-322 (444)
247 PHA02533 17 large terminase pr 78.1 11 0.00024 45.1 9.9 70 79-148 58-131 (534)
248 PF05127 Helicase_RecD: Helica 77.6 0.42 9E-06 48.9 -1.7 55 98-152 2-57 (177)
249 PRK05973 replicative DNA helic 77.4 3.9 8.4E-05 43.8 5.4 48 80-129 50-100 (237)
250 KOG2036|consensus 76.9 5.6 0.00012 48.1 6.9 109 84-212 272-391 (1011)
251 PF03354 Terminase_1: Phage Te 76.6 9.7 0.00021 44.7 8.9 106 97-213 26-136 (477)
252 KOG0391|consensus 76.2 4.3 9.4E-05 51.5 5.9 103 97-212 638-749 (1958)
253 PRK08760 replicative DNA helic 75.2 41 0.00088 39.7 13.5 110 92-210 226-349 (476)
254 TIGR02237 recomb_radB DNA repa 74.7 8.4 0.00018 39.4 6.9 37 94-130 11-49 (209)
255 PRK09302 circadian clock prote 74.1 8.2 0.00018 45.6 7.5 47 94-141 272-320 (509)
256 COG0210 UvrD Superfamily I DNA 73.7 9.3 0.0002 46.4 8.1 108 81-212 3-114 (655)
257 PRK00411 cdc6 cell division co 73.3 3.8 8.2E-05 46.3 4.3 17 97-113 59-75 (394)
258 PF13872 AAA_34: P-loop contai 73.3 4.6 9.9E-05 44.7 4.7 46 96-141 65-114 (303)
259 PRK05636 replicative DNA helic 72.7 68 0.0015 38.2 14.6 111 92-211 262-386 (505)
260 TIGR02655 circ_KaiC circadian 72.0 8.9 0.00019 45.2 7.1 48 94-142 262-311 (484)
261 PF01695 IstB_IS21: IstB-like 71.0 6.2 0.00013 40.1 4.9 36 96-131 50-85 (178)
262 PF13307 Helicase_C_2: Helicas 70.0 11 0.00025 37.6 6.5 65 432-496 10-78 (167)
263 COG0470 HolB ATPase involved i 69.8 6.1 0.00013 42.9 4.8 17 199-215 108-124 (325)
264 COG2805 PilT Tfp pilus assembl 69.1 2.8 6E-05 46.4 1.9 56 74-131 98-162 (353)
265 TIGR03880 KaiC_arch_3 KaiC dom 69.0 13 0.00028 38.7 6.8 47 94-141 15-63 (224)
266 TIGR02928 orc1/cdc6 family rep 68.6 9.4 0.0002 42.5 6.1 15 97-111 44-58 (365)
267 TIGR03881 KaiC_arch_4 KaiC dom 68.5 8 0.00017 40.3 5.2 51 77-129 4-56 (229)
268 PF12846 AAA_10: AAA-like doma 68.4 13 0.00028 39.5 6.9 39 97-135 5-43 (304)
269 cd02037 MRP-like MRP (Multiple 68.1 6.1 0.00013 39.2 4.0 32 97-128 4-35 (169)
270 PRK09361 radB DNA repair and r 67.8 13 0.00028 38.6 6.5 38 93-130 21-60 (225)
271 KOG0388|consensus 66.3 32 0.0007 42.1 9.8 133 97-245 590-752 (1185)
272 PF01656 CbiA: CobQ/CobB/MinD/ 66.3 7.2 0.00016 38.9 4.2 33 97-129 3-35 (195)
273 PF04364 DNA_pol3_chi: DNA pol 65.8 12 0.00026 36.5 5.5 69 417-496 15-90 (137)
274 COG4626 Phage terminase-like p 65.8 22 0.00048 42.4 8.4 103 97-213 90-197 (546)
275 TIGR00609 recB exodeoxyribonuc 65.7 12 0.00025 48.6 6.8 55 94-148 9-73 (1087)
276 PF03796 DnaB_C: DnaB-like hel 65.4 5.9 0.00013 42.3 3.5 112 93-212 17-142 (259)
277 cd00561 CobA_CobO_BtuR ATP:cor 65.4 21 0.00047 35.9 7.2 27 100-126 9-35 (159)
278 KOG1132|consensus 65.0 2.9 6.3E-05 51.6 1.2 38 78-115 19-62 (945)
279 PLN03025 replication factor C 65.0 12 0.00027 41.3 6.1 14 200-213 99-112 (319)
280 PF13177 DNA_pol3_delta2: DNA 64.9 17 0.00038 36.2 6.5 45 169-213 67-115 (162)
281 PRK04328 hypothetical protein; 63.6 11 0.00024 40.3 5.2 51 77-129 7-59 (249)
282 TIGR03878 thermo_KaiC_2 KaiC d 63.6 13 0.00028 40.0 5.8 36 94-129 35-72 (259)
283 PRK10436 hypothetical protein; 63.2 7.2 0.00016 45.8 3.9 53 77-131 200-254 (462)
284 KOG1015|consensus 63.1 22 0.00047 44.8 7.8 129 103-285 706-861 (1567)
285 PRK13826 Dtr system oriT relax 62.7 23 0.00051 45.8 8.5 60 78-137 379-441 (1102)
286 PHA03333 putative ATPase subun 62.7 72 0.0016 39.4 12.0 53 97-149 191-244 (752)
287 PRK04195 replication factor C 62.7 32 0.0007 40.4 9.2 15 97-111 43-57 (482)
288 PRK14958 DNA polymerase III su 62.3 12 0.00027 44.4 5.7 15 199-213 118-132 (509)
289 PRK09165 replicative DNA helic 61.3 1.4E+02 0.003 35.6 14.1 111 92-211 214-352 (497)
290 PRK14956 DNA polymerase III su 61.0 9.3 0.0002 45.0 4.3 17 97-113 44-60 (484)
291 PF05970 PIF1: PIF1-like helic 60.9 12 0.00026 42.4 5.1 56 97-153 26-81 (364)
292 PF02534 T4SS-DNA_transf: Type 60.8 9.9 0.00022 44.1 4.5 54 97-156 48-101 (469)
293 KOG4439|consensus 60.5 20 0.00044 43.7 6.9 102 429-572 744-849 (901)
294 COG1074 RecB ATP-dependent exo 60.4 17 0.00037 47.4 6.9 66 82-147 5-79 (1139)
295 PRK05896 DNA polymerase III su 60.4 10 0.00022 45.9 4.6 19 96-114 41-59 (605)
296 PRK13342 recombination factor 60.3 11 0.00025 43.2 4.8 16 97-112 40-55 (413)
297 PRK06526 transposase; Provisio 60.0 8.3 0.00018 41.6 3.4 35 97-131 102-136 (254)
298 TIGR02016 BchX chlorophyllide 59.9 9.4 0.0002 42.0 3.9 29 100-128 7-35 (296)
299 cd01126 TraG_VirD4 The TraG/Tr 59.4 7.4 0.00016 44.1 3.1 55 97-157 3-57 (384)
300 TIGR02238 recomb_DMC1 meiotic 59.4 85 0.0018 35.0 11.3 77 32-115 38-118 (313)
301 PRK14964 DNA polymerase III su 59.3 15 0.00032 43.5 5.6 28 95-122 37-65 (491)
302 PRK05728 DNA polymerase III su 59.1 16 0.00035 35.9 5.0 53 411-463 9-65 (142)
303 COG1435 Tdk Thymidine kinase [ 58.5 35 0.00075 35.7 7.4 86 97-211 8-93 (201)
304 cd02032 Bchl_like This family 57.8 11 0.00024 40.3 3.9 30 100-129 7-36 (267)
305 PRK06871 DNA polymerase III su 57.5 15 0.00033 41.1 5.1 45 169-213 73-120 (325)
306 PHA02542 41 41 helicase; Provi 57.0 60 0.0013 38.4 10.0 44 93-136 188-236 (473)
307 TIGR01968 minD_bact septum sit 56.7 12 0.00026 39.3 3.9 31 97-127 6-36 (261)
308 PRK05580 primosome assembly pr 56.5 36 0.00079 41.9 8.5 74 416-489 175-251 (679)
309 PF03237 Terminase_6: Terminas 56.5 39 0.00084 36.8 8.1 51 97-147 1-57 (384)
310 PTZ00112 origin recognition co 56.3 15 0.00033 46.3 5.1 16 98-113 786-801 (1164)
311 TIGR00614 recQ_fam ATP-depende 55.8 42 0.00091 39.3 8.6 69 105-177 210-284 (470)
312 PRK09183 transposase/IS protei 55.8 18 0.00039 39.0 5.2 40 92-131 99-140 (259)
313 PRK05707 DNA polymerase III su 55.8 24 0.00052 39.6 6.3 45 169-213 71-119 (328)
314 PF02606 LpxK: Tetraacyldisacc 55.5 61 0.0013 36.4 9.4 108 83-208 29-154 (326)
315 PRK13185 chlL protochlorophyll 54.9 13 0.00028 39.8 3.9 30 97-127 7-36 (270)
316 PRK12323 DNA polymerase III su 54.9 12 0.00025 45.8 3.8 15 199-213 123-137 (700)
317 PRK06090 DNA polymerase III su 54.7 29 0.00064 38.8 6.7 45 169-213 73-121 (319)
318 COG0467 RAD55 RecA-superfamily 54.7 21 0.00045 38.1 5.4 64 77-143 7-72 (260)
319 COG2804 PulE Type II secretory 54.7 12 0.00026 44.1 3.7 53 77-131 240-294 (500)
320 TIGR01007 eps_fam capsular exo 54.5 14 0.00031 37.7 4.0 34 97-130 22-55 (204)
321 TIGR02538 type_IV_pilB type IV 53.7 12 0.00027 44.9 3.8 35 93-129 315-350 (564)
322 PF06733 DEAD_2: DEAD_2; Inte 53.5 10 0.00022 38.1 2.6 49 163-217 113-161 (174)
323 cd01393 recA_like RecA is a b 53.4 31 0.00067 35.6 6.3 37 94-130 18-62 (226)
324 PRK13897 type IV secretion sys 53.4 15 0.00033 44.5 4.5 55 97-157 162-216 (606)
325 PRK13232 nifH nitrogenase redu 53.1 14 0.0003 39.7 3.8 30 97-127 6-35 (273)
326 PRK07471 DNA polymerase III su 53.0 32 0.00069 39.2 6.8 34 180-213 121-154 (365)
327 cd01123 Rad51_DMC1_radA Rad51_ 52.7 25 0.00053 36.6 5.5 103 94-214 18-129 (235)
328 PF02374 ArsA_ATPase: Anion-tr 52.6 18 0.00039 40.1 4.6 35 97-131 5-39 (305)
329 PRK14963 DNA polymerase III su 52.4 22 0.00048 42.2 5.6 15 97-111 40-54 (504)
330 TIGR02655 circ_KaiC circadian 52.3 18 0.00039 42.6 4.8 63 77-142 5-70 (484)
331 PRK09112 DNA polymerase III su 52.3 25 0.00055 39.8 5.8 15 199-213 140-154 (351)
332 PRK12377 putative replication 52.2 19 0.00041 38.8 4.6 37 95-132 103-140 (248)
333 TIGR03158 cas3_cyano CRISPR-as 51.9 56 0.0012 36.9 8.5 56 120-177 271-326 (357)
334 TIGR03015 pepcterm_ATPase puta 51.8 35 0.00076 36.1 6.6 16 97-112 47-62 (269)
335 PRK13230 nitrogenase reductase 51.8 15 0.00033 39.6 3.8 28 100-127 8-35 (279)
336 cd01983 Fer4_NifH The Fer4_Nif 51.6 22 0.00047 30.5 4.1 30 99-128 5-34 (99)
337 PRK06921 hypothetical protein; 51.6 17 0.00038 39.4 4.2 34 97-131 121-156 (266)
338 PF10609 ParA: ParA/MinD ATPas 51.5 45 0.00097 30.0 6.0 60 97-160 5-64 (81)
339 cd02117 NifH_like This family 51.4 16 0.00036 37.6 3.9 28 100-127 7-34 (212)
340 TIGR03371 cellulose_yhjQ cellu 51.3 17 0.00036 38.0 4.0 34 97-130 6-39 (246)
341 KOG4439|consensus 51.3 49 0.0011 40.6 8.0 116 93-213 345-476 (901)
342 PRK10689 transcription-repair 51.0 63 0.0014 42.4 9.7 80 118-212 806-891 (1147)
343 PRK06904 replicative DNA helic 50.9 1.3E+02 0.0028 35.6 11.5 36 92-128 218-257 (472)
344 PRK08840 replicative DNA helic 50.8 1.3E+02 0.0027 35.6 11.4 69 57-128 174-253 (464)
345 KOG0338|consensus 50.8 26 0.00057 41.3 5.6 64 110-177 415-484 (691)
346 PRK14950 DNA polymerase III su 50.7 24 0.00051 42.7 5.6 18 97-114 42-59 (585)
347 PRK07952 DNA replication prote 50.6 19 0.00042 38.6 4.3 36 95-131 101-137 (244)
348 PRK14962 DNA polymerase III su 50.1 12 0.00026 44.1 2.9 15 199-213 116-130 (472)
349 PRK14873 primosome assembly pr 50.1 58 0.0012 40.2 8.7 75 415-489 172-250 (665)
350 PRK14951 DNA polymerase III su 50.1 16 0.00035 44.4 4.1 15 199-213 123-137 (618)
351 PRK04537 ATP-dependent RNA hel 50.0 48 0.001 40.0 8.0 56 118-177 254-315 (572)
352 cd01523 RHOD_Lact_B Member of 50.0 30 0.00066 31.0 5.0 37 429-465 59-95 (100)
353 PHA02544 44 clamp loader, smal 50.0 14 0.00031 40.3 3.4 13 200-212 100-112 (316)
354 TIGR00635 ruvB Holliday juncti 49.9 19 0.00042 39.1 4.3 15 97-111 34-48 (305)
355 PRK08506 replicative DNA helic 49.7 1.2E+02 0.0026 35.7 11.1 68 58-128 150-227 (472)
356 cd02035 ArsA ArsA ATPase funct 49.7 20 0.00043 37.4 4.2 34 97-130 3-36 (217)
357 COG0466 Lon ATP-dependent Lon 49.6 89 0.0019 38.7 9.9 33 175-217 402-434 (782)
358 PRK07993 DNA polymerase III su 49.5 19 0.00041 40.5 4.2 45 169-213 73-121 (334)
359 TIGR02533 type_II_gspE general 49.2 14 0.0003 43.7 3.2 36 94-131 242-278 (486)
360 cd02042 ParA ParA and ParB of 49.1 23 0.0005 31.9 4.0 36 97-132 4-39 (104)
361 PRK14948 DNA polymerase III su 49.0 24 0.00051 43.1 5.2 33 180-212 101-133 (620)
362 TIGR03345 VI_ClpV1 type VI sec 48.8 43 0.00092 42.5 7.6 18 97-114 600-617 (852)
363 PRK14960 DNA polymerase III su 48.4 25 0.00054 43.2 5.1 20 681-700 572-591 (702)
364 PRK13235 nifH nitrogenase redu 48.3 19 0.0004 38.8 3.8 30 97-127 6-35 (274)
365 TIGR01281 DPOR_bchL light-inde 48.3 19 0.00041 38.5 3.9 28 100-127 7-34 (268)
366 PRK08006 replicative DNA helic 48.3 1.2E+02 0.0026 35.9 10.7 69 57-128 181-260 (471)
367 PRK08116 hypothetical protein; 48.3 44 0.00095 36.3 6.7 35 95-131 116-152 (268)
368 cd02034 CooC The accessory pro 48.3 25 0.00054 33.3 4.2 35 97-131 3-37 (116)
369 KOG1131|consensus 48.2 16 0.00036 43.0 3.5 45 59-118 15-62 (755)
370 PRK08691 DNA polymerase III su 48.0 18 0.00039 44.5 4.0 20 94-113 39-58 (709)
371 PRK07004 replicative DNA helic 47.9 1.4E+02 0.0029 35.2 11.1 70 58-128 170-249 (460)
372 PRK09111 DNA polymerase III su 47.9 24 0.00052 42.9 5.0 44 170-213 101-145 (598)
373 PRK06731 flhF flagellar biosyn 47.7 76 0.0016 34.7 8.4 84 97-181 79-167 (270)
374 PTZ00454 26S protease regulato 47.6 96 0.0021 35.8 9.6 19 94-112 180-198 (398)
375 TIGR02524 dot_icm_DotB Dot/Icm 47.2 20 0.00043 40.8 3.9 37 94-130 134-172 (358)
376 cd01121 Sms Sms (bacterial rad 47.2 69 0.0015 36.6 8.3 53 76-130 65-119 (372)
377 TIGR01969 minD_arch cell divis 47.0 21 0.00046 37.2 4.0 32 97-128 5-36 (251)
378 PRK04837 ATP-dependent RNA hel 46.9 65 0.0014 37.0 8.2 54 120-177 254-313 (423)
379 PTZ00035 Rad51 protein; Provis 46.9 1.1E+02 0.0023 34.6 9.6 25 94-118 117-143 (337)
380 cd01394 radB RadB. The archaea 46.8 44 0.00095 34.5 6.2 36 94-129 18-55 (218)
381 PRK07994 DNA polymerase III su 46.8 27 0.00058 42.8 5.2 15 199-213 118-132 (647)
382 TIGR03029 EpsG chain length de 46.7 21 0.00045 38.3 3.9 33 97-129 108-140 (274)
383 PRK13889 conjugal transfer rel 46.6 35 0.00075 43.9 6.3 60 77-138 343-407 (988)
384 COG4185 Uncharacterized protei 46.4 6 0.00013 40.1 -0.3 39 97-139 6-44 (187)
385 PRK13850 type IV secretion sys 46.3 21 0.00046 43.8 4.3 55 97-157 143-197 (670)
386 PRK13869 plasmid-partitioning 46.2 21 0.00045 41.2 4.0 32 97-128 126-157 (405)
387 COG2927 HolC DNA polymerase II 46.2 32 0.00069 34.2 4.7 53 409-461 6-63 (144)
388 PRK07764 DNA polymerase III su 46.1 26 0.00057 44.1 5.1 15 199-213 119-133 (824)
389 PRK06646 DNA polymerase III su 46.0 33 0.00072 34.4 4.9 55 408-462 6-64 (154)
390 PRK10876 recB exonuclease V su 45.9 40 0.00087 44.3 6.9 55 93-148 16-88 (1181)
391 PF01935 DUF87: Domain of unkn 45.8 24 0.00051 36.7 4.1 41 93-133 22-64 (229)
392 TIGR03754 conj_TOL_TraD conjug 45.8 38 0.00081 41.5 6.2 38 94-131 180-218 (643)
393 PRK07003 DNA polymerase III su 45.6 27 0.00057 43.6 4.9 15 199-213 118-132 (830)
394 cd00550 ArsA_ATPase Oxyanion-t 45.5 22 0.00047 38.2 3.8 34 97-130 4-37 (254)
395 PRK13880 conjugal transfer cou 45.5 13 0.00028 45.4 2.3 55 97-156 179-233 (636)
396 PRK13531 regulatory ATPase Rav 45.1 21 0.00045 42.3 3.7 51 65-115 10-61 (498)
397 PRK08769 DNA polymerase III su 45.0 43 0.00093 37.5 6.1 35 179-213 92-126 (319)
398 cd01524 RHOD_Pyr_redox Member 44.8 39 0.00085 29.7 4.7 37 429-465 49-85 (90)
399 PRK06645 DNA polymerase III su 44.8 33 0.00072 40.8 5.4 18 96-113 46-63 (507)
400 PF05707 Zot: Zonular occluden 44.6 21 0.00045 36.5 3.3 32 97-129 4-35 (193)
401 PRK11192 ATP-dependent RNA hel 44.1 77 0.0017 36.4 8.3 54 120-177 244-303 (434)
402 TIGR00763 lon ATP-dependent pr 44.1 1.2E+02 0.0025 38.2 10.3 16 97-112 351-366 (775)
403 PRK07773 replicative DNA helic 43.8 1.4E+02 0.0031 38.0 11.2 146 57-211 175-338 (886)
404 PRK14961 DNA polymerase III su 43.8 37 0.0008 38.4 5.5 16 97-112 42-57 (363)
405 PRK14949 DNA polymerase III su 43.8 27 0.00059 44.2 4.6 15 199-213 118-132 (944)
406 COG0305 DnaB Replicative DNA h 43.8 1.7E+02 0.0036 34.4 10.7 93 17-111 109-214 (435)
407 KOG1001|consensus 43.7 45 0.00098 41.1 6.5 106 94-213 153-267 (674)
408 TIGR03453 partition_RepA plasm 43.6 24 0.00052 40.2 4.0 32 97-128 109-140 (387)
409 PRK13822 conjugal transfer cou 43.5 27 0.00058 42.8 4.5 56 97-158 228-283 (641)
410 CHL00175 minD septum-site dete 43.4 25 0.00055 37.9 3.9 31 97-127 20-50 (281)
411 PRK08533 flagellar accessory p 43.4 44 0.00096 35.3 5.7 40 92-131 21-62 (230)
412 cd02036 MinD Bacterial cell di 43.3 29 0.00062 34.1 4.0 31 97-127 4-34 (179)
413 smart00450 RHOD Rhodanese Homo 43.2 40 0.00087 29.0 4.6 38 429-466 54-92 (100)
414 PRK13234 nifH nitrogenase redu 42.6 26 0.00056 38.5 3.9 30 97-127 9-38 (295)
415 PRK06321 replicative DNA helic 42.5 92 0.002 36.8 8.6 110 92-211 223-347 (472)
416 TIGR03576 pyridox_MJ0158 pyrid 42.4 1.6E+02 0.0034 33.2 10.1 157 43-213 9-180 (346)
417 PRK08939 primosomal protein Dn 42.4 31 0.00066 38.3 4.4 37 95-131 158-194 (306)
418 PHA02518 ParA-like protein; Pr 42.1 29 0.00063 35.2 3.9 33 97-129 5-37 (211)
419 PF14417 MEDS: MEDS: MEthanoge 42.0 53 0.0012 33.6 5.9 53 405-457 21-73 (191)
420 TIGR03743 SXT_TraD conjugative 41.9 46 0.001 40.7 6.2 54 94-151 176-232 (634)
421 smart00488 DEXDc2 DEAD-like he 41.7 18 0.00039 39.7 2.5 47 163-216 205-251 (289)
422 smart00489 DEXDc3 DEAD-like he 41.7 18 0.00039 39.7 2.5 47 163-216 205-251 (289)
423 cd01528 RHOD_2 Member of the R 41.6 73 0.0016 28.6 6.1 38 430-467 57-95 (101)
424 TIGR02760 TraI_TIGR conjugativ 41.5 1.2E+02 0.0025 42.3 10.3 134 37-209 980-1121(1960)
425 cd03111 CpaE_like This protein 41.4 34 0.00074 31.5 3.9 32 97-128 4-36 (106)
426 PRK13886 conjugal transfer pro 40.9 31 0.00066 37.2 4.0 31 97-127 7-37 (241)
427 COG1484 DnaC DNA replication p 40.8 31 0.00067 37.2 4.1 36 95-130 107-142 (254)
428 cd02040 NifH NifH gene encodes 40.8 30 0.00064 36.7 3.9 30 97-127 6-35 (270)
429 TIGR03167 tRNA_sel_U_synt tRNA 40.7 1.3E+02 0.0028 33.6 9.0 49 419-467 62-111 (311)
430 PRK14955 DNA polymerase III su 40.6 24 0.00052 40.4 3.4 16 198-213 125-140 (397)
431 TIGR01389 recQ ATP-dependent D 40.5 83 0.0018 37.9 8.1 59 115-177 218-282 (591)
432 PRK14969 DNA polymerase III su 40.3 52 0.0011 39.4 6.2 18 96-113 41-58 (527)
433 PRK13705 plasmid-partitioning 40.2 27 0.00059 40.0 3.7 31 97-127 111-141 (388)
434 PF05876 Terminase_GpA: Phage 39.8 24 0.00052 42.5 3.3 102 97-213 37-147 (557)
435 PRK06835 DNA replication prote 39.8 36 0.00078 38.2 4.5 36 95-131 185-221 (329)
436 KOG0330|consensus 39.8 50 0.0011 37.9 5.5 59 115-177 294-358 (476)
437 COG1198 PriA Primosomal protei 39.7 59 0.0013 40.4 6.6 74 416-489 230-306 (730)
438 PF02456 Adeno_IVa2: Adenoviru 39.7 34 0.00074 38.2 4.1 27 16-42 6-32 (369)
439 PRK14952 DNA polymerase III su 39.6 31 0.00066 41.8 4.1 16 198-213 116-131 (584)
440 PRK10037 cell division protein 39.5 31 0.00068 36.6 3.8 32 97-128 6-37 (250)
441 PLN03187 meiotic recombination 39.3 1.5E+02 0.0032 33.7 9.3 78 32-115 68-148 (344)
442 PRK14954 DNA polymerase III su 39.2 28 0.0006 42.5 3.7 22 96-117 41-63 (620)
443 PHA02519 plasmid partition pro 38.9 31 0.00067 39.6 3.9 32 97-128 111-142 (387)
444 PRK13236 nitrogenase reductase 38.9 30 0.00064 38.0 3.6 29 99-127 12-40 (296)
445 PRK11057 ATP-dependent DNA hel 38.8 86 0.0019 38.1 7.8 58 117-178 232-295 (607)
446 cd00079 HELICc Helicase superf 38.7 1.8E+02 0.0038 26.4 8.4 54 120-177 27-86 (131)
447 cd01131 PilT Pilus retraction 38.7 33 0.00071 35.3 3.7 16 95-110 2-18 (198)
448 PTZ00424 helicase 45; Provisio 38.5 96 0.0021 35.0 7.8 59 115-177 261-325 (401)
449 PRK10818 cell division inhibit 38.2 35 0.00075 36.4 4.0 32 97-128 7-38 (270)
450 PF07728 AAA_5: AAA domain (dy 38.1 43 0.00093 31.8 4.2 30 97-129 3-32 (139)
451 PRK13233 nifH nitrogenase redu 37.9 34 0.00073 36.7 3.8 30 97-127 7-37 (275)
452 PHA02535 P terminase ATPase su 37.8 1.6E+02 0.0034 35.8 9.5 50 97-146 157-207 (581)
453 TIGR02767 TraG-Ti Ti-type conj 37.7 29 0.00063 42.3 3.6 55 97-157 215-270 (623)
454 COG3640 CooC CO dehydrogenase 37.6 34 0.00074 36.8 3.6 47 98-153 5-52 (255)
455 PRK13833 conjugal transfer pro 37.5 28 0.00061 39.0 3.2 38 97-134 148-187 (323)
456 PRK11776 ATP-dependent RNA hel 37.2 1.1E+02 0.0024 35.5 8.2 56 118-177 239-300 (460)
457 PF04273 DUF442: Putative phos 36.9 1.3E+02 0.0028 28.4 7.1 57 380-450 49-105 (110)
458 KOG1002|consensus 36.6 81 0.0018 37.4 6.6 115 94-213 205-329 (791)
459 PRK08451 DNA polymerase III su 36.6 56 0.0012 39.2 5.7 34 180-213 97-130 (535)
460 CHL00072 chlL photochlorophyll 36.5 34 0.00074 37.5 3.6 29 99-127 6-34 (290)
461 COG0513 SrmB Superfamily II DN 36.5 1E+02 0.0022 36.7 7.8 53 121-177 273-331 (513)
462 TIGR02525 plasmid_TraJ plasmid 36.4 40 0.00087 38.6 4.2 36 93-129 148-185 (372)
463 TIGR01420 pilT_fam pilus retra 36.3 36 0.00077 38.3 3.8 36 93-130 121-158 (343)
464 PRK10590 ATP-dependent RNA hel 36.3 1.1E+02 0.0023 35.8 7.8 54 120-177 244-303 (456)
465 PRK11670 antiporter inner memb 36.2 37 0.0008 38.7 3.9 33 97-129 112-144 (369)
466 cd02038 FleN-like FleN is a me 36.1 44 0.00096 32.2 3.9 33 98-130 5-37 (139)
467 PRK14957 DNA polymerase III su 36.0 36 0.00079 40.9 4.0 18 97-114 42-59 (546)
468 PRK09302 circadian clock prote 36.0 40 0.00086 39.9 4.3 64 77-143 15-81 (509)
469 cd01521 RHOD_PspE2 Member of t 36.0 59 0.0013 29.9 4.6 37 429-465 62-100 (110)
470 PRK08181 transposase; Validate 35.9 44 0.00096 36.4 4.3 33 96-129 109-142 (269)
471 PRK06964 DNA polymerase III su 35.8 60 0.0013 36.7 5.5 16 198-213 130-145 (342)
472 KOG0991|consensus 35.6 22 0.00048 38.3 1.9 18 199-217 112-129 (333)
473 PRK05563 DNA polymerase III su 35.6 25 0.00055 42.3 2.6 18 97-114 42-59 (559)
474 TIGR00580 mfd transcription-re 35.6 1.1E+02 0.0023 39.4 8.1 79 119-212 658-742 (926)
475 PF01113 DapB_N: Dihydrodipico 35.5 1.1E+02 0.0024 29.1 6.5 55 434-488 70-124 (124)
476 PRK13876 conjugal transfer cou 35.5 31 0.00067 42.4 3.4 45 97-143 148-192 (663)
477 cd01129 PulE-GspE PulE/GspE Th 35.4 41 0.00089 36.4 4.0 35 76-110 61-97 (264)
478 TIGR03018 pepcterm_TyrKin exop 34.9 43 0.00093 34.5 3.9 34 97-130 40-74 (207)
479 TIGR02640 gas_vesic_GvpN gas v 34.9 37 0.00081 36.5 3.5 34 97-133 25-58 (262)
480 PRK06749 replicative DNA helic 34.9 2.8E+02 0.0062 32.3 10.9 37 92-128 183-221 (428)
481 cd01529 4RHOD_Repeats Member o 34.8 69 0.0015 28.4 4.8 37 429-465 54-91 (96)
482 cd01444 GlpE_ST GlpE sulfurtra 34.6 86 0.0019 27.5 5.3 37 428-464 53-90 (96)
483 cd00046 DEXDc DEAD-like helica 34.2 2E+02 0.0043 25.8 7.9 57 430-488 29-88 (144)
484 PRK13849 putative crown gall t 34.0 43 0.00094 35.5 3.8 32 97-128 6-37 (231)
485 TIGR01287 nifH nitrogenase iro 33.8 43 0.00094 35.9 3.8 28 100-127 7-34 (275)
486 PRK13107 preprotein translocas 33.8 1.1E+02 0.0024 38.9 7.7 54 120-177 448-505 (908)
487 COG2519 GCD14 tRNA(1-methylade 33.7 68 0.0015 34.9 5.1 51 406-457 164-214 (256)
488 PRK13231 nitrogenase reductase 33.6 25 0.00055 37.4 2.0 29 97-127 7-35 (264)
489 cd01526 RHOD_ThiF Member of th 33.4 65 0.0014 30.2 4.6 38 429-466 70-109 (122)
490 PRK11034 clpA ATP-dependent Cl 33.4 57 0.0012 40.8 5.2 15 199-213 556-570 (758)
491 TIGR00631 uvrb excinuclease AB 33.3 1.2E+02 0.0027 37.3 8.0 76 120-212 441-522 (655)
492 PRK13768 GTPase; Provisional 33.1 47 0.001 35.6 4.0 31 97-128 6-37 (253)
493 PRK08727 hypothetical protein; 33.0 79 0.0017 33.4 5.6 33 97-130 45-78 (233)
494 TIGR02639 ClpA ATP-dependent C 32.9 23 0.00049 44.0 1.7 18 97-114 488-505 (731)
495 cd02033 BchX Chlorophyllide re 32.8 49 0.0011 37.2 4.2 30 99-128 37-66 (329)
496 COG1192 Soj ATPases involved i 32.7 48 0.001 35.1 3.9 31 97-127 7-38 (259)
497 PRK05642 DNA replication initi 32.4 1.3E+02 0.0029 31.7 7.2 70 53-131 13-83 (234)
498 PF12683 DUF3798: Protein of u 32.4 1.4E+02 0.003 32.8 7.2 110 368-496 4-123 (275)
499 cd02028 UMPK_like Uridine mono 32.3 55 0.0012 33.1 4.1 37 98-134 4-40 (179)
500 PRK05564 DNA polymerase III su 32.2 77 0.0017 34.9 5.6 34 180-213 73-106 (313)
No 1
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-220 Score=1901.39 Aligned_cols=800 Identities=47% Similarity=0.749 Sum_probs=750.4
Q ss_pred hhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCC-------cchhhHHHHHHHHHHHHHH
Q psy2371 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGET-------LDSILPKAFSVCREASKRV 76 (816)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~-------ld~~l~ea~a~vrea~~R~ 76 (816)
++++||++++|.+++|+++|++||+++++|++|||++|+++|.+||.|+++|++ +|+++|||||+||||++|+
T Consensus 2 ~~kl~~~~~~r~l~~~~~~~~~i~~~e~~~~~lsd~eL~~~t~~~k~rl~~g~~~~~~~~~ld~~l~eafA~vREa~~R~ 81 (939)
T PRK12902 2 LKLLLGDPNARKLKKYQPIVTEINLLEEEIAPLSDDELRAKTAEFRQRLDKAESDEEQREILDELLPEAFAVVREASKRV 81 (939)
T ss_pred hhHhhCCccHhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hccccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 77 LKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
+||+|||||++|+++||+|+||||+|||||||+++||+|+|||+|+||||||+|+|||+||++||+|+|++||||||++.
T Consensus 82 lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~ 161 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQ 161 (939)
T ss_pred hCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHH
Q psy2371 157 SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYK 236 (816)
Q Consensus 157 ~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~ 236 (816)
+++++++|+.+|+||||||||++||||||||||+.+.+.+++|+++||||||||||||||||||||||||...+...|.
T Consensus 162 ~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~- 240 (939)
T PRK12902 162 QDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ- 240 (939)
T ss_pred CCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchHHHH-
Confidence 9999999999999999999999999999999999988899999999999999999999999999999999988888998
Q ss_pred HHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH---------------HHHHHHHHH
Q psy2371 237 IINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI---------------KMALRAHVL 301 (816)
Q Consensus 237 ~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~---------------~~Al~A~~l 301 (816)
.++++++.|.+.. ....+.||.+|++.+++.||+.|..++|++++ .+||+|+++
T Consensus 241 ~~~~~~~~L~~~~-----------~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~l 309 (939)
T PRK12902 241 KAAEVAAALQRKD-----------GIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKEL 309 (939)
T ss_pred HHHHHHHHhhhhc-----------ccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHH
Confidence 9999999986411 11224599999999999999999999998754 899999999
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
|++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++
T Consensus 310 f~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~ 389 (939)
T PRK12902 310 FIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEV 389 (939)
T ss_pred HhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEE
Q psy2371 382 EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVL 461 (816)
Q Consensus 382 e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vL 461 (816)
||.++||++|+.||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.||.+|.+.||||+||
T Consensus 390 Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 390 EFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHH-Hhhh---------cch----h-----------
Q psy2371 462 NAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIK-DIKK---------NIS----S----------- 514 (816)
Q Consensus 462 nak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~-~~~~---------~~~----~----------- 514 (816)
||+ ++++||+||++||++|+||||||||||||||+|||||+++++ +++. .+. .
T Consensus 470 NAk~~~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (939)
T PRK12902 470 NAKPENVEREAEIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPPVPLQRGLKGGQG 549 (939)
T ss_pred eCCCcchHhHHHHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhccccccccccccccccccccccccccc
Confidence 998 779999999999999999999999999999999999999875 2220 000 0
Q ss_pred -----------------------------------------h----------------------H-----------HHHH
Q psy2371 515 -----------------------------------------E----------------------V-----------KKKN 520 (816)
Q Consensus 515 -----------------------------------------~----------------------~-----------~~~~ 520 (816)
. + .+..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (939)
T PRK12902 550 FGPKAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLREAYNR 629 (939)
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHHHHHHH
Confidence 0 0 0123
Q ss_pred HHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCC
Q psy2371 521 KIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKI 600 (816)
Q Consensus 521 ~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~ 600 (816)
.+..++..|.+++++|.++||||||||+||+|+|+|||+|||||||||||+|+||||+||+||++||++++.++|+++++
T Consensus 630 ~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg~dri~~~~~~l~~ 709 (939)
T PRK12902 630 IKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDRVAGLMNAFRV 709 (939)
T ss_pred HHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhCcHHHHHHHHHcCC
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhc
Q psy2371 601 PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYI 680 (816)
Q Consensus 601 ~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~ 680 (816)
++++||++++++++|++||+++|++||++||++++||+|||.||++||++|++||+++++.+.+..|++++|+++|+.|+
T Consensus 710 ~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~~~~~~~i~~~~~~~i~~~v~~~~ 789 (939)
T PRK12902 710 EEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGRDLKEQVIGYGEKTMDEIVEAYV 789 (939)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCccccHHHHHHHHHHhcCCCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Q psy2371 681 SLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKIL---NNKKFLNFERNIILQSI 757 (816)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~r~~~L~~i 757 (816)
+++..+++|++++|...+...+....++........+.++++++|.+.+...|+.|++.+ +++.++++||.++|++|
T Consensus 790 ~~~~~~~~w~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~i 869 (939)
T PRK12902 790 NPDLPPEEWDLDQLVSKVKEFVYLLEDLKPEDLEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQI 869 (939)
T ss_pred CCccChhhccHHHHHHHHHHHhcChhhcChHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 776677899999999998864321111111111112458999999999999999999999 78899999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 758 DKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 758 D~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|..|++||++|++||++||||||||+||+.|||+|||++|+.|+.+|+.++++.+|++
T Consensus 870 D~~W~eHL~~md~Lre~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~ir~~vv~~l~~~ 927 (939)
T PRK12902 870 DTLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVVYSLFMF 927 (939)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999999999999999999999999999999999999874
No 2
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-218 Score=1897.89 Aligned_cols=772 Identities=47% Similarity=0.742 Sum_probs=721.1
Q ss_pred hhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhccc---------------------------
Q psy2371 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHS--------------------------- 54 (816)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~--------------------------- 54 (816)
++++++||++++|.+|+|+++|++||+++++|++|||+||+++|.+||+|+++
T Consensus 3 ~~l~k~fg~~~~r~lk~~~~~v~kIn~le~~~~~LSDeeLr~kT~efk~rl~~~~~~~~~~~~~l~~~~~~~~~~~~~e~ 82 (1112)
T PRK12901 3 EFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDERED 82 (1112)
T ss_pred HHHHHHcCCccHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccccchhhhhH
Confidence 47899999999999999999999999999999999999999999999999998
Q ss_pred ----------------CCCcchhhHHHHHHHHHHHHHHhc----------------------------------------
Q psy2371 55 ----------------GETLDSILPKAFSVCREASKRVLK---------------------------------------- 78 (816)
Q Consensus 55 ----------------g~~ld~~l~ea~a~vrea~~R~lg---------------------------------------- 78 (816)
|++||++||||||+||||++|++|
T Consensus 83 ~~~~id~~~~~~~~~~~~~Ld~iLpEAFAvvREaarR~lg~~~~~v~a~~~d~~l~~~~~~v~~~g~~a~~~~~w~~~g~ 162 (1112)
T PRK12901 83 IYAQIDKLEKEAYEILEKVLDEILPEAFAIVKETARRFAENEEIEVTATDFDRELAATKDFVTIEGDKAIWKNHWDAGGN 162 (1112)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhcCcceeecccchhhhhhccccccccccchhhhhcccccccc
Confidence 889999999999999999999996
Q ss_pred -----cccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 79 -----MRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 79 -----~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
|+|||||++|+++||+|+||||+|||||||+++||+|+|||+|+||||||+|+|||+||++||+|+|+|||||||
T Consensus 163 ~~~W~m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 163 EITWDMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred cccCCCcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccc-h
Q psy2371 154 VNSS-EISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNN-A 231 (816)
Q Consensus 154 ~i~~-~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~-~ 231 (816)
|+.. ++++++|+.+|.||||||||++||||||||||+.++++++||+++||||||||||||||||||||||||.+.. .
T Consensus 243 ~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILIDEARTPLIISGp~~~~~~ 322 (1112)
T PRK12901 243 CIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKGDD 322 (1112)
T ss_pred ecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhccccCcEEEeCCCCCccH
Confidence 9987 7899999999999999999999999999999999999999999999999999999999999999999996654 4
Q ss_pred hhhHHHHhhHhhhccchhh---------------hh----------------------hhhhhc----------------
Q psy2371 232 QYFYKIINPIPKLLVPEID---------------TK----------------------NIKKNI---------------- 258 (816)
Q Consensus 232 ~~y~~~i~~iv~~L~~~~~---------------~~----------------------~~~~~~---------------- 258 (816)
..|. .++.++..|..... ++ ...+.+
T Consensus 323 ~~y~-~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~~~~ 401 (1112)
T PRK12901 323 QEFE-ELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENFYMQ 401 (1112)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 7887 77776666521000 00 000000
Q ss_pred -----ccccCCCCCeEEeCCCcEEEechhhHHHHHH------HH-----------------------------------H
Q psy2371 259 -----KYTKKNTGDYIIDYETNQVFLTENGYEKYEN------IL-----------------------------------I 292 (816)
Q Consensus 259 -----~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~------~l-----------------------------------~ 292 (816)
......+.||.+|++.+++.||+.|..++++ +| .
T Consensus 402 ~n~~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~~~~ 481 (1112)
T PRK12901 402 DNNREMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQDYSV 481 (1112)
T ss_pred hhhhcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhhhhh
Confidence 0011235699999999999999999999887 44 0
Q ss_pred --------HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHh
Q psy2371 293 --------KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFR 364 (816)
Q Consensus 293 --------~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~ 364 (816)
.+||+|+.+|++|+||||.||+|+|||+||||+|+|||||+||||||||||||+|+++++|+|+||||||||
T Consensus 482 ~~~~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR 561 (1112)
T PRK12901 482 KSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFR 561 (1112)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhH
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENS 444 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~s 444 (816)
+|++|+||||||.|++.||+++|+|+|++||||+|++|+|++|.||.|..+||+||+++|.++|+.||||||||.|++.|
T Consensus 562 ~Y~kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 562 MYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHH
Q psy2371 445 ELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKK 524 (816)
Q Consensus 445 e~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (816)
|.||++|+..||||+||||++|++||+||++||++|+||||||||||||||+||
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg-------------------------- 695 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS-------------------------- 695 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc--------------------------
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCC
Q psy2371 525 LKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGK 604 (816)
Q Consensus 525 ~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~ 604 (816)
++|.++||||||+|++|+|+|+|+|++||||||||||+|+||||+||+||++||++++.++|+++|+++++
T Consensus 696 ---------~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g~~ege 766 (1112)
T PRK12901 696 ---------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGE 766 (1112)
T ss_pred ---------hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCC
Q psy2371 605 SIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKK 684 (816)
Q Consensus 605 ~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 684 (816)
+|+|++++++|++||+++|++||++||++++||+|||.||++||++|+.+|.++++...|.+|+.++++.+|+.|.+
T Consensus 767 ~I~~~~i~ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~~~l~~~i~~~i~~~i~~~v~~~~~--- 843 (1112)
T PRK12901 767 VIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENNKV--- 843 (1112)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998853
Q ss_pred CCccccHHHHHHHHHHhcCCCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhc------------------------
Q psy2371 685 SDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKIL------------------------ 740 (816)
Q Consensus 685 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------------ 740 (816)
+|++++|...+...|+...++........+.+++.++|.+.+...|..|.+.+
T Consensus 844 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y~~K~~~~~~~~~~v~~~~~~~~~~~~~~i~~ 920 (1112)
T PRK12901 844 ---ANDYKGFKFELIRTLAMESPITEEEFNKLKKDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEEQGNMYERIVV 920 (1112)
T ss_pred ---hhhHHHHHHHHHHHhCcccCCCHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccc
Confidence 47899999999887765433221111112458899999999999999999887
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHH
Q psy2371 741 ----------------------NNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFH 798 (816)
Q Consensus 741 ----------------------~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~ 798 (816)
+++.+++|||.++|++||..|++||+.||+||+||+||+||||||+.|||+|||+||+
T Consensus 921 ~~tdg~~~~~~~~~l~~~~~~~g~~~~~~~er~i~L~~ID~~W~eHL~~md~Lr~~I~lr~y~QkDPl~eYk~Eaf~lF~ 1000 (1112)
T PRK12901 921 PFTDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFK 1000 (1112)
T ss_pred cccccccceeeeccHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2371 799 KMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 799 ~m~~~i~~~~~~~l~~~ 815 (816)
.|+.+|+.+++++||+.
T Consensus 1001 ~m~~~i~~~iv~~l~~~ 1017 (1112)
T PRK12901 1001 NMVDKVNREVISFLFKG 1017 (1112)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999873
No 3
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.7e-217 Score=1866.87 Aligned_cols=750 Identities=45% Similarity=0.727 Sum_probs=722.4
Q ss_pred hHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccchh
Q psy2371 5 TKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDV 84 (816)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~V 84 (816)
.++|.+ ++|.+|+|.++|++||+++++|++|||++|+++|.+||+|+++|+++|+++|||||+||||++|++||+||||
T Consensus 4 ~~~~~~-~~r~lk~~~~~v~~In~le~~~~~LsD~eL~~kt~~fk~rl~~g~~ld~~l~eafAvvREA~~R~lG~r~ydV 82 (925)
T PRK12903 4 LKLFFF-KSTEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDV 82 (925)
T ss_pred hhhcCC-cchHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCCCcCch
Confidence 345544 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHH
Q psy2371 85 QLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLK 164 (816)
Q Consensus 85 Q~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r 164 (816)
|++|+++||+|+||||+|||||||+++||+|+|||+|+||||||+|+|||+||++||+|+|+|||||||++.+++++++|
T Consensus 83 QliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~r 162 (925)
T PRK12903 83 QIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLK 162 (925)
T ss_pred HHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhh
Q psy2371 165 KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKL 244 (816)
Q Consensus 165 ~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~ 244 (816)
+.+|.||||||||++||||||||||+.+.+.+++|+++|||||||||||||+||||||||||.+.++++|. .++.+++.
T Consensus 163 r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~-~~~~~v~~ 241 (925)
T PRK12903 163 REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYL-AADQFVRT 241 (925)
T ss_pred HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHH-HHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999 99999999
Q ss_pred ccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhccCcce
Q psy2371 245 LVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHKNKHY 308 (816)
Q Consensus 245 L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~~~dY 308 (816)
|.+ .||.+|++.+++.||+.|+.+++++|+ .+||+|+++|++|+||
T Consensus 242 L~~------------------~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 242 LKE------------------DDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred ccc------------------cceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 974 499999999999999999999999864 9999999999999999
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
||+||+|+|||+||||+|+|||||+||||||||||||+|++|++|+|+||||||||+|++|+||||||+|++.||.++||
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHH
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKL 468 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~r 468 (816)
++|+.||||+|++|+|+||.+|.|..+||.||+++|.++|++||||||||.|++.||.||.+|++.||+|+||||++|++
T Consensus 384 l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~ 463 (925)
T PRK12903 384 MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAR 463 (925)
T ss_pred CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEec
Q psy2371 469 EAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTE 548 (816)
Q Consensus 469 Ea~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te 548 (816)
|++||++||++|+||||||||||||||+|| ++|.++||||||+|+
T Consensus 464 EA~IIa~AG~~GaVTIATNMAGRGTDI~Lg-----------------------------------~~V~~~GGLhVIgTe 508 (925)
T PRK12903 464 EAEIIAKAGQKGAITIATNMAGRGTDIKLS-----------------------------------KEVLELGGLYVLGTD 508 (925)
T ss_pred HHHHHHhCCCCCeEEEecccccCCcCccCc-----------------------------------hhHHHcCCcEEEecc
Confidence 999999999999999999999999999999 789999999999999
Q ss_pred CCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcCh-HHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcH
Q psy2371 549 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSS-DQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNF 627 (816)
Q Consensus 549 ~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~ 627 (816)
+|+|+|+|+|++||||||||||+|+||||+||+||++||+ +++.++|.+++++ ||++++++++|++||+++|++||
T Consensus 509 rheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~~~~ri~~~~~~l~~~---~i~~~~i~~~ie~AQkkvE~~nf 585 (925)
T PRK12903 509 KAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNFDKIKEAFKKLGDD---EIKSKFFSKALLNAQKKIEGFNF 585 (925)
T ss_pred cCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhCCHHHHHHHHHhcCCC---cccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999863 89999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcC----
Q psy2371 628 DIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFK---- 703 (816)
Q Consensus 628 ~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 703 (816)
++||++++||+|||+||++||++|++||+++++.+.+..|++++++.+++.|+++. .+++|++++|...+...|+
T Consensus 586 diRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~w~~~~l~~~l~~~~~~i~~ 664 (925)
T PRK12903 586 DTRKNVLDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSFIIL-KNNTINYKELVEFLNDNLLRITH 664 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCcc-chhhcCHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999998766 6789999999999988765
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccc
Q psy2371 704 LDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKIL----NNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRS 779 (816)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~ 779 (816)
...+...|. ..+.++++++|.+.+.+.|..|.+.+ +++.++++||.++|++||.+|++||++|++||+|||||+
T Consensus 665 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~y~~k~~~~~~~~g~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~lR~ 742 (925)
T PRK12903 665 FKFSEKDFE--NYHKEELAQYLIEALNEIYFKKRQVILDKIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQ 742 (925)
T ss_pred cCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333333331 23458899999999999999999999 788999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 780 YAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 780 y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|||+||+.|||+|||+||+.|+.+|+.++++.|+++
T Consensus 743 y~QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~ 778 (925)
T PRK12903 743 YSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNN 778 (925)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999874
No 4
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.8e-216 Score=1873.40 Aligned_cols=800 Identities=53% Similarity=0.856 Sum_probs=756.1
Q ss_pred hhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccc
Q psy2371 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHF 82 (816)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~ 82 (816)
+++++||++++|.+++|.++|++||+++++|++|||+||+++|.+||.|+++|+++|++||||||+||||++|++||+||
T Consensus 5 ~~~~~~g~~~~r~l~~~~~~v~~i~~~e~~~~~lsd~eL~~~t~~~k~rl~~~~~ld~~l~eafA~vrEa~~R~lGm~~y 84 (913)
T PRK13103 5 LLKKLFGSKNEREVKRMLKTVQIVNAFEEQMVALSDEQLRAKTAEFKARLAKGETLDQLLPEAFAVAREAGKRVMGMRHF 84 (913)
T ss_pred HHHHHhCCccHhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH
Q psy2371 83 DVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS 162 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~ 162 (816)
|||++|+++||+|+||||+|||||||+++||+|++||+|++|||||||+|||+||++||+++|++|||+|++++++++++
T Consensus 85 dVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~ 164 (913)
T PRK13103 85 DVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPE 164 (913)
T ss_pred hhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHh
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv 242 (816)
+|+.+|.|||||||+++||||||||+|+.+.+++++|+++|+||||+|||||||||||||||||.+..++.|. .++.++
T Consensus 165 err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~-~~~~~v 243 (913)
T PRK13103 165 EKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYI-EINRLI 243 (913)
T ss_pred HHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchHHHH-HHHHHH
Confidence 9999999999999999999999999999989999999999999999999999999999999999988888999 999999
Q ss_pred hhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH---------H--------------HHHHHHH
Q psy2371 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL---------I--------------KMALRAH 299 (816)
Q Consensus 243 ~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l---------~--------------~~Al~A~ 299 (816)
+.|.+...+. ......+.||.+|++.+++.||+.|..++++++ . .+||+|+
T Consensus 244 ~~L~~~~~~~------~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~ 317 (913)
T PRK13103 244 PRLKQHIEEV------EGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317 (913)
T ss_pred HHHHhhhhcc------ccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHH
Confidence 9996421110 001223569999999999999999999998876 1 7899999
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
++|++|+||||.||+|+|||+||||+|+|||||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te 397 (913)
T PRK13103 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTE 397 (913)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeE
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~ 459 (816)
++||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.|++.||.||.+|++.||+|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~ 477 (913)
T PRK13103 398 AFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477 (913)
T ss_pred HHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 460 vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
||||++|++||+||++||++|+||||||||||||||+|||||++.+..+. + ...+.+.++++.|.+++++|.++
T Consensus 478 VLNAk~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~e~V~e~ 551 (913)
T PRK13103 478 VLNAKYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVAALE-N-----PTPEQIAQIKADWQKRHQQVIEA 551 (913)
T ss_pred HhccccchhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhh-h-----hhHHHHHHHHHHHHhHHHHHHHc
Confidence 99999999999999999999999999999999999999999886433221 1 12456788999999999999999
Q ss_pred CceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHH
Q psy2371 540 GGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQ 619 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 619 (816)
||||||+|++|+|+|+|+|++||||||||||+|+||||+||+||++||++++.++|++++++++++|+|++++++|++||
T Consensus 552 GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~~~~e~~~I~~~~i~~~i~~aQ 631 (913)
T PRK13103 552 GGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQ 631 (913)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhCcHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHH
Q psy2371 620 RKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILK 699 (816)
Q Consensus 620 ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 699 (816)
+++|++||++||++++||+|||.||++||++|+.+|+++++.+.+.+|++++++++++.|.++...+++|++++|...+.
T Consensus 632 k~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~e~~~~~~l~~~~~ 711 (913)
T PRK13103 632 RKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAAENIGETIAEFREEVLNATISQHIPPQSLPEQWDVAGLEAALA 711 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhcCCccChhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987766788999999999999
Q ss_pred HhcCCCchhHHHhh--hcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy2371 700 KEFKLDISFKIFFK--KKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINL 777 (816)
Q Consensus 700 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~l 777 (816)
..++...++..+.. ...+.+++.++|.+.+.+.|+.|++.++++.++++||.++|++||..|++||++|++||++|||
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y~~k~~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~l 791 (913)
T PRK13103 712 SDFAVKLPIQQWLDEDDHLYEETLREKILEELLAAYNEKEDQAGAEALRTFEKQILLRVLDDLWKDHLSTMDHLRHGIHL 791 (913)
T ss_pred HHcCCCCCHHHhHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88766443322211 1123578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 778 RSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 778 r~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|+||||||+.|||+|||++|+.|+.+|+.+++++|+++
T Consensus 792 r~y~QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~ 829 (913)
T PRK13103 792 RGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHV 829 (913)
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999874
No 5
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.5e-213 Score=1850.15 Aligned_cols=800 Identities=53% Similarity=0.873 Sum_probs=755.4
Q ss_pred hhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccc
Q psy2371 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHF 82 (816)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~ 82 (816)
+++++||++++|.+++|+++|++||+++++|++|||++|+++|.+||+|+++|+++|++||||||+||||++|++||+||
T Consensus 5 ~~~k~~g~~~~r~l~~~~~~v~~i~~~~~~~~~lsd~eL~~~t~~~k~~l~~~~~l~~~l~eafA~vrEaa~R~lgm~~y 84 (908)
T PRK13107 5 LLTKVFGSRNDRTLKGLGKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIMAEAFATVREASKRVFEMRHF 84 (908)
T ss_pred HHHHHhCCccHhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH
Q psy2371 83 DVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS 162 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~ 162 (816)
|||++|+++||+|+||||+|||||||+|+||+|++||+|++|||||||+|||.||++||+++|++|||+|+++++++++.
T Consensus 85 dVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~ 164 (908)
T PRK13107 85 DVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQ 164 (908)
T ss_pred chHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHh
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv 242 (816)
+|+.+|+|||||||||+||||||||||+.+.+++++|+++|+|||||||||+||||||||||||.+...+.|. .++.++
T Consensus 165 ~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~-~~~~~v 243 (908)
T PRK13107 165 EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYI-KINTLI 243 (908)
T ss_pred HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHH-HHHHHH
Confidence 9999999999999999999999999999888899999999999999999999999999999999988888999 999999
Q ss_pred hhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH---------H--------------HHHHHHH
Q psy2371 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL---------I--------------KMALRAH 299 (816)
Q Consensus 243 ~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l---------~--------------~~Al~A~ 299 (816)
..|.+...... .....+.||.+|++.+++.||+.|..++++++ . .+||+|+
T Consensus 244 ~~L~~~~~~~~------~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~ 317 (908)
T PRK13107 244 PNLIRQDKEDT------EEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317 (908)
T ss_pred HHHHhhhhccc------cccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHH
Confidence 99875211000 11133569999999999999999999999976 1 8999999
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
++|++|+||||+||+|+|||+||||+|+|||||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te 397 (908)
T PRK13107 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTE 397 (908)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeE
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~ 459 (816)
+.||+++||++|+.||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||+|++.||.||.+|++.|++|.
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~ 477 (908)
T PRK13107 398 AFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHE 477 (908)
T ss_pred HHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 460 vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
+|||+++++|++|+++||++|+||||||||||||||+|||||++.++++. + ...+.+..+++.|.+++++|.++
T Consensus 478 vLnak~~~~Ea~ii~~Ag~~G~VtIATnmAGRGTDIkLggn~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~V~~~ 551 (908)
T PRK13107 478 VLNAKFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIEALE-N-----PTAEQKAKIKADWQIRHDEVVAA 551 (908)
T ss_pred eccCcccHHHHHHHHhCCCCCcEEEecCCcCCCcceecCCchHHhhhhhc-c-----hhhHHHHHHHHHHHhhHHHHHHc
Confidence 99999999999999999999999999999999999999999887433321 1 12456778899999999999999
Q ss_pred CceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHH
Q psy2371 540 GGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQ 619 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 619 (816)
||||||+|++|+|+|+|+|++||||||||||+|+||||+||+||++||++++.++|+++|++++++|+|++++++|++||
T Consensus 552 GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e~~~i~~~~~~~~i~~aQ 631 (908)
T PRK13107 552 GGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQ 631 (908)
T ss_pred CCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHH
Q psy2371 620 RKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILK 699 (816)
Q Consensus 620 ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 699 (816)
+++|++||++||++++||+|||.||++||++|+.+|.++++.+.+.+|++++++++++.++++..++++|++.+|...+.
T Consensus 632 ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~~~ 711 (908)
T PRK13107 632 RKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKNIQDDVINGVIDQYIPPQSVEELWDVPGLEQRLH 711 (908)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876655677899999999998
Q ss_pred HhcCCCchhHHHhh--hcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy2371 700 KEFKLDISFKIFFK--KKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINL 777 (816)
Q Consensus 700 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~l 777 (816)
..++...++..+.. ...+.++++++|.+.+.+.|+.|++.++++.++++||.++|++||.+|++||++|++||++|+|
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~l 791 (908)
T PRK13107 712 QEFMLKLPIQEWLDKEDDLHEETLRERIVTSWSDAYKAKEEMVGAQVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHL 791 (908)
T ss_pred HHcCCCCCHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88766443333211 1124588999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 778 RSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 778 r~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|+||||||+.|||+|||++|+.|+.+|+.++++++|++
T Consensus 792 r~y~QkdPl~eYk~Ea~~lF~~m~~~i~~~~~~~l~~~ 829 (908)
T PRK13107 792 RGYAQKNPKQEYKRESFELFQQLLETLKHDVISVLSKV 829 (908)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999874
No 6
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.9e-213 Score=1853.64 Aligned_cols=796 Identities=52% Similarity=0.873 Sum_probs=752.7
Q ss_pred hhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccc
Q psy2371 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHF 82 (816)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~ 82 (816)
+++++||+++.|.+|+|+++|++||+++++|++|||+||+++|.+||+|+++|+++|++||||||+||||++|++||+||
T Consensus 5 ~~~~~~~~~~~r~lk~~~~~~~~i~~~~~~~~~lsd~eL~~~t~~~k~~l~~~~~ld~~l~eafA~vrEa~~R~lg~~~y 84 (896)
T PRK13104 5 LIKKMFGSRNERTLRRMEKSVMAINAFEPKMQALSNEELAGKTQEFKERFNNGESLDELLAEAFATVREVSLRTLGLRHF 84 (896)
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH
Q psy2371 83 DVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS 162 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~ 162 (816)
|||++|+++||+|+||||+|||||||||+||+|+++|.|++|||||||+|||.||++||+++|+++||+|++++|+++++
T Consensus 85 dvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~ 164 (896)
T PRK13104 85 DVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHK 164 (896)
T ss_pred hHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHh
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv 242 (816)
+|+.+|.|||+|||||+||||||+|+|+.+.+++++|+++|+||||||||||||||||||||||.+.+++.|. .++.++
T Consensus 165 ~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~-~~~~~v 243 (896)
T PRK13104 165 EKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYI-KINSLI 243 (896)
T ss_pred HHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHH-HHHHHH
Confidence 9999999999999999999999999998888888999999999999999999999999999999998888999 999999
Q ss_pred hhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH---------H--------------HHHHHHH
Q psy2371 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL---------I--------------KMALRAH 299 (816)
Q Consensus 243 ~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l---------~--------------~~Al~A~ 299 (816)
+.|.+... ...+.||.+|++.++++||+.|..++++++ . .+||+|+
T Consensus 244 ~~l~~~~~-----------~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~ 312 (896)
T PRK13104 244 PQLKKQEE-----------EGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAH 312 (896)
T ss_pred HHHHhccc-----------cCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHH
Confidence 99975210 012469999999999999999999999987 1 8999999
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
++|++|+||||.||+|+|||+||||+|+|||||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+|+
T Consensus 313 ~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te 392 (896)
T PRK13104 313 AMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTE 392 (896)
T ss_pred HHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeE
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~ 459 (816)
++||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.||.+|++.||+|+
T Consensus 393 ~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~ 472 (896)
T PRK13104 393 AYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQ 472 (896)
T ss_pred HHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 460 vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
+|||+++++|++|+++||++|+||||||||||||||+||||+++... ..+. .+..+.+..+++.|..++++|.++
T Consensus 473 vLnak~~q~Ea~iia~Ag~~G~VtIATNmAGRGtDI~Lggn~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 473 VLNAKFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLA---NLPA--DASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred eecCCCChHHHHHHHhCCCCCcEEEeccCccCCcceecCCchhhhhh---cccc--chhhHHHHHHHHHhhhhhhHHHHc
Confidence 99999999999999999999999999999999999999999886322 1111 122456778899999999999999
Q ss_pred CceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHH
Q psy2371 540 GGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQ 619 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 619 (816)
||||||+|++|+|+|+|+|++||||||||||+|+||||+||+||++||++++.++|+++++++++||++++++++|++||
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 627 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIENAQ 627 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHH
Q psy2371 620 RKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILK 699 (816)
Q Consensus 620 ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 699 (816)
+++|++||++||++++||+|||+||++||++|+++|+++++.+.+..|++++++++++.|+++...+++|++++|...+.
T Consensus 628 ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~ 707 (896)
T PRK13104 628 RKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAMTDTQEVVEMMREEVMDSLVDTYIPPQSLEDQWDPQALSDVLS 707 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCCCcchhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876544567899999999999
Q ss_pred HhcCCCchhHHHhhh--cCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy2371 700 KEFKLDISFKIFFKK--KYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINL 777 (816)
Q Consensus 700 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~l 777 (816)
..|+....+..+... ..+.++++++|.+.+.+.|+.|++.++++.++++||.++|++||.+|++||++|++||+||||
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~k~~~~g~~~~~~~er~i~L~~iD~~W~ehL~~md~Lr~~I~l 787 (896)
T PRK13104 708 DEFKIKAPVPDWIDKDHSIQPEQIKEKILALAIEHYDEKVRKVGRPVISQFEKSIILQTLDNHWREHLAAMDQLRQGIHL 787 (896)
T ss_pred HhcCCCCChhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 887554332222111 124589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 778 RSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 778 r~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|+|||+||+.|||+|||+||+.|+.+|+.+++++||++
T Consensus 788 r~y~QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~ 825 (896)
T PRK13104 788 RGYAQKDPKQEYKKEAFSLFTMMLDNLKYEVIRILSSV 825 (896)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999874
No 7
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=100.00 E-value=8.1e-213 Score=1842.13 Aligned_cols=789 Identities=49% Similarity=0.755 Sum_probs=746.1
Q ss_pred hhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccch
Q psy2371 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFD 83 (816)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~ 83 (816)
++.+|| ++|.+|+|.++|++||++++++++|||++|+++|.+||+|+++|+++|+++|||||++|||++|++||+|||
T Consensus 2 ~~~~~~--~~r~lk~~~~~v~~in~le~~~~~lsd~eL~~~t~~~k~rl~~g~~ld~il~eafAvvrEa~~R~lG~r~yd 79 (870)
T CHL00122 2 FNNLFN--NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFD 79 (870)
T ss_pred CccccC--ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 667888 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH
Q psy2371 84 VQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL 163 (816)
Q Consensus 84 VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~ 163 (816)
||++|+++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+|+|++||||||++.+++++++
T Consensus 80 vQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~e 159 (870)
T CHL00122 80 VQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEE 159 (870)
T ss_pred hHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhh
Q psy2371 164 KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPK 243 (816)
Q Consensus 164 r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~ 243 (816)
|+.+|+||||||||++||||||||||+.+.+.+++|+++|||||||||||||+||||||||||.+.+...|. .++++++
T Consensus 160 rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~-~~~~~v~ 238 (870)
T CHL00122 160 RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYI-VADELAK 238 (870)
T ss_pred HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchHHHH-HHHHHHH
Confidence 999999999999999999999999999998999999999999999999999999999999999988888998 9999999
Q ss_pred hccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH---------------HHHHHHHHHhccCcce
Q psy2371 244 LLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI---------------KMALRAHVLYHKNKHY 308 (816)
Q Consensus 244 ~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~---------------~~Al~A~~l~~~~~dY 308 (816)
.|.+ +.||.+|++.++++||+.|..+++++++ .+||+|+++|++|+||
T Consensus 239 ~L~~-----------------~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dY 301 (870)
T CHL00122 239 YLEK-----------------NVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHY 301 (870)
T ss_pred hcCc-----------------CCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcE
Confidence 9986 6799999999999999999999999763 7999999999999999
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
||+||+|+|||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+++||
T Consensus 302 iV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~ 381 (870)
T CHL00122 302 IVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYN 381 (870)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc--h
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ--H 466 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~--~ 466 (816)
++|+.||||+|++|+|+||.||.|..+||+||++++.++|++||||||||.|++.||.||.+|.+.||||+||||++ +
T Consensus 382 l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 382 LEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred CCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984 6
Q ss_pred HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHH-Hhhh--------c--------------------------
Q psy2371 467 KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIK-DIKK--------N-------------------------- 511 (816)
Q Consensus 467 ~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~-~~~~--------~-------------------------- 511 (816)
++||+||++||++|+||||||||||||||+|||||++||+ ++.. .
T Consensus 462 ~~EA~IIA~AG~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (870)
T CHL00122 462 RRESEIVAQAGRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLKNDLKFLSLS 541 (870)
T ss_pred hhHHHHHHhcCCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccccccchhhhhhcccchhhhccc
Confidence 9999999999999999999999999999999999999986 3320 0
Q ss_pred ---c-------------hh------hHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCC
Q psy2371 512 ---I-------------SS------EVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDP 569 (816)
Q Consensus 512 ---~-------------~~------~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdp 569 (816)
+ .. ...+.+.+.+++..|.+++++|.++||||||||++|+|+|+|+|++|||||||||
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgTErheSrRIDnQLrGRaGRQGDP 621 (870)
T CHL00122 542 DFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDP 621 (870)
T ss_pred ccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEecCcCchHHHHHHHhccccCCCCC
Confidence 0 00 0012456778899999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHH
Q psy2371 570 GSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQ 649 (816)
Q Consensus 570 G~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~ 649 (816)
|+|+||||+||+||++||++++.++|.++++ +++||+++++++++++||+++|++||++||++++||+|+|+||++||+
T Consensus 622 G~s~f~lSLED~l~~~f~~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~ 700 (870)
T CHL00122 622 GSSRFFLSLEDNLLRIFGGDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYS 700 (870)
T ss_pred CcceEEEEeccHHHHhhChHHHHHHHHHhCC-CCcccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCCCchhHHHhhhcCCHHHHHHHHHHHH
Q psy2371 650 ERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTF 729 (816)
Q Consensus 650 ~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 729 (816)
+|+++|+++++.+.+.+|++++++++++ |+++... .+|++.+|.+++...++....+........+.++++++|.+.+
T Consensus 701 ~R~~iL~~~~~~~~i~~~~~~~i~~~v~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 778 (870)
T CHL00122 701 ERRKILESQSLRDWILAYGEQVIDDIIT-FLKSRKN-PNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQF 778 (870)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHH-hcCccCc-ccccHHHHHHHHHHHhCCCCCcchhhhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999 8766543 4599999999998877543322111111124589999999999
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHH
Q psy2371 730 DKKYENKIKIL---NNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKY 806 (816)
Q Consensus 730 ~~~~~~~~~~~---~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~ 806 (816)
...|..|.+.+ +++.++++||.++|++||.+|++||++|++||+|||||+|||+||+.|||+|||++|+.|+.+|+.
T Consensus 779 ~~~y~~k~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHL~~md~Lr~~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~i~~ 858 (870)
T CHL00122 779 WISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRH 858 (870)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2371 807 EAIKKIMTI 815 (816)
Q Consensus 807 ~~~~~l~~~ 815 (816)
++++.|+++
T Consensus 859 ~~v~~l~~~ 867 (870)
T CHL00122 859 LVIYDLFRS 867 (870)
T ss_pred HHHHHHHcC
Confidence 999999874
No 8
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.7e-210 Score=1833.15 Aligned_cols=791 Identities=57% Similarity=0.909 Sum_probs=759.5
Q ss_pred ChhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccc
Q psy2371 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMR 80 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~ 80 (816)
+++++++||++++|.+++|.++|++||+++++|++|||++|+++|.+||.|+++|+++|+++|||||+||||++|++||+
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~lsd~eL~~~t~~~~~rl~~g~~ld~~l~eafA~vrEa~~R~lg~~ 81 (830)
T PRK12904 2 LGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGMR 81 (830)
T ss_pred hHHHHHHhCCccHhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC
Q psy2371 81 HFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~ 160 (816)
|||||++|+++||+|+||||+|||||||||+||+|+++|.|++|||||||+|||+||++||+++|++|||+|++++++++
T Consensus 82 ~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~ 161 (830)
T PRK12904 82 HFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMS 161 (830)
T ss_pred CCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhh
Q psy2371 161 HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240 (816)
Q Consensus 161 ~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~ 240 (816)
+++|+.+|.||||||||++||||||||+|+.+.+++++|+++|||||||||||||+||||||||||.+.++++|. .+++
T Consensus 162 ~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~-~~~~ 240 (830)
T PRK12904 162 PEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK-RANK 240 (830)
T ss_pred HHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHH-HHHH
Confidence 999999999999999999999999999999888899999999999999999999999999999999998889999 9999
Q ss_pred HhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhcc
Q psy2371 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHK 304 (816)
Q Consensus 241 iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~ 304 (816)
+++.|.. +.||.+|++.++++||+.|..++|++++ .+||+|+++|++
T Consensus 241 ~v~~l~~-----------------~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 241 IVPTLEK-----------------EGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred HHHhcCC-----------------CCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 9999975 6799999999999999999999998764 899999999999
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
|+||||+||+|+|||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+|+++||+
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
++||++|+.||||+|++|+|+||.||.|..+||.+|++++.++|..||||||||+|++.|+.||..|.+.|++|++|||+
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHH-HhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceE
Q psy2371 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIK-DIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLH 543 (816)
Q Consensus 465 ~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLh 543 (816)
+++||++|+++||++|+||||||||||||||+|||||+++|+ ++.. ...+....+++.|.+++++|.++||||
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE------ETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhh------hhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 999999999999999999999999999999999999999997 3321 234567889999999999999999999
Q ss_pred EEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHH
Q psy2371 544 IIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIE 623 (816)
Q Consensus 544 VI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e 623 (816)
||+|++|+|+|+|+|++||||||||||+|+||||+||+||++||++++.++|.++++++++||+++++++++++||+++|
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e 617 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVE 617 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhchHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcC
Q psy2371 624 LRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFK 703 (816)
Q Consensus 624 ~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~ 703 (816)
++||++||++++||+|||+||++||++|++||+++++.+.|.+|++++++.+|+.|.++...+++|++++|..++...++
T Consensus 618 ~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 697 (830)
T PRK12904 618 GRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFG 697 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhcCCCcChhhcCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999887666788999999999998876
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccc
Q psy2371 704 LDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQK 783 (816)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~Qk 783 (816)
...++..+.....+.++++++|.+.+.+.|..|++.++++.++++||.++|++||.+|++||++|++||+|||||+|||+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~k~~~~g~e~~~~~eR~i~L~~iD~~W~eHL~~md~LRegI~lR~y~Qk 777 (830)
T PRK12904 698 LELPIEEWLEEGLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQK 777 (830)
T ss_pred CCCChhHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccC
Confidence 54433333221124588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 784 DPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 784 dPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
||+.|||+|||++|+.|+.+|+.+++++++++
T Consensus 778 dPl~eY~~ea~~~F~~m~~~I~~~iv~~l~~~ 809 (830)
T PRK12904 778 DPLQEYKREGFELFEEMLDSIKEEVVRTLMKV 809 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999874
No 9
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.9e-209 Score=1821.82 Aligned_cols=773 Identities=46% Similarity=0.732 Sum_probs=718.6
Q ss_pred ChhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhccc--------------------------
Q psy2371 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHS-------------------------- 54 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~-------------------------- 54 (816)
+++++++||++++|.+|+|+++|++||+++++|++|||++|+++|.+||.|+++
T Consensus 2 ~~~~~k~~g~~~~r~lk~~~~~v~~I~~~~~~~~~Lsd~eLr~kt~~~k~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (1025)
T PRK12900 2 LKIFEKIFGSKHEKDIKKIQPIIDRINEIQASLASLSDDALREKGMELKSRVRGALEPIEQKKKDLEKKLDNPDISLEEA 81 (1025)
T ss_pred hHHHHHHhCCccHhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccchhhh
Confidence 367889999999999999999999999999999999999999999999999977
Q ss_pred ------------------CCCcchhhHHHHHHHHHHHHHHhc-------------cccchhhhhhhccccCCceeeecCC
Q psy2371 55 ------------------GETLDSILPKAFSVCREASKRVLK-------------MRHFDVQLIGGIALHYGNISEMQTG 103 (816)
Q Consensus 55 ------------------g~~ld~~l~ea~a~vrea~~R~lg-------------~~p~~VQ~~~~~~L~~G~Iaem~TG 103 (816)
|+++|++||||||+|||||+|++| |+|||||++|+++||+|+||||+||
T Consensus 82 e~~~~~~d~~~~~~~~~~~~~l~~ilpeaFA~vrEaarR~~G~~~~~~g~~~~wdm~~ydVQLiGgivLh~G~IAEM~TG 161 (1025)
T PRK12900 82 ESINEELDTLAKEYEEATAAALEEILPETFALVKETCRRLKGHTYQVMGREMTWDMVPYDVQLIGGIVLHSGKISEMATG 161 (1025)
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccccchHHhhhHHhhcCCccccCCC
Confidence 668999999999999999999999 9999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhh
Q psy2371 104 EGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFD 183 (816)
Q Consensus 104 EGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fD 183 (816)
||||||++||+|+|||+|+||||||+|+|||+||++||+|+|+||||||||+.+++++++|+.+|.||||||||++||||
T Consensus 162 EGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFD 241 (1025)
T PRK12900 162 EGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFD 241 (1025)
T ss_pred CCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccc-hhhhHHHHhhHhhhccch--------------
Q psy2371 184 YLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNN-AQYFYKIINPIPKLLVPE-------------- 248 (816)
Q Consensus 184 yLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~-~~~y~~~i~~iv~~L~~~-------------- 248 (816)
||||||+.++++++||+++|||||||||||||+||||||||||.+.. ...|. .++..+..|...
T Consensus 242 YLRDnma~~~~~~vqR~~~faIVDEvDSvLIDeARTPLIISgp~~~~~~~~y~-~~~~~~~~lv~~q~~l~~~~l~ea~~ 320 (1025)
T PRK12900 242 YLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKFQ-EIKPWIEQLVRAQQNLVASYLTEAEK 320 (1025)
T ss_pred cchhccccchhhhhccCCceEEEechhhhhhccccCceEEeCCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996654 56665 444333321110
Q ss_pred ------------------------hhhhhhhh-----------------hc----ccccCCCCCeEEeCCCcEEEechhh
Q psy2371 249 ------------------------IDTKNIKK-----------------NI----KYTKKNTGDYIIDYETNQVFLTENG 283 (816)
Q Consensus 249 ------------------------~~~~~~~~-----------------~~----~~~~~~~~~y~vd~~~~~v~lt~~g 283 (816)
.+.....+ .+ ......+.||.+|++.+++.||+.|
T Consensus 321 ~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e~~y~~dn~~~~~~~~~~~~~~iDek~~~v~LTe~G 400 (1025)
T PRK12900 321 ALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTENEYLKDNSSRMHEVDDELYFAVDEKANTIDLTDKG 400 (1025)
T ss_pred hhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhhhHhhhhhhhhccccCCCCeEEEEcCCCeeeecHhH
Confidence 00000000 00 0011234589999999999999999
Q ss_pred HHHHHHHH-----------------------------------------H---------HHHHHHHHHhccCcceEEeCC
Q psy2371 284 YEKYENIL-----------------------------------------I---------KMALRAHVLYHKNKHYIIKNN 313 (816)
Q Consensus 284 ~~~~e~~l-----------------------------------------~---------~~Al~A~~l~~~~~dYiV~d~ 313 (816)
.+++++++ . ++||+|+++|++|+||||.||
T Consensus 401 ~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l~~~~~~~~~~~h~i~qaLkA~~lf~kD~~YvV~dg 480 (1025)
T PRK12900 401 REFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEVYRLFAERSERLHNISQLLKAYSLFERDDEYVVQNG 480 (1025)
T ss_pred HHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHHHhhcchhhHHHHHHHHHHHHHHHHhcCCceEEECC
Confidence 99988741 0 889999999999999999999
Q ss_pred eEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEE
Q psy2371 314 KIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETIT 393 (816)
Q Consensus 314 ~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~ 393 (816)
+|+|||++|||+|+|||||+||||||||||||+|+++++|+|+||||||||+|++|+||||||.|++.||+++|+|+|+.
T Consensus 481 kV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y~kLaGMTGTA~te~~Ef~~iY~L~Vv~ 560 (1025)
T PRK12900 481 QVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLDVVV 560 (1025)
T ss_pred EEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhchhhcccCCCChhHHHHHHHHhCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHH
Q psy2371 394 VPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQII 473 (816)
Q Consensus 394 IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 473 (816)
||||+|++|+|++|.||.|..+|+++|+++|.+.|..||||||||+|++.|+.||.+|++.||+|++|||+|++||++|+
T Consensus 561 IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnakq~~REa~Ii 640 (1025)
T PRK12900 561 IPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAKQHDREAEIV 640 (1025)
T ss_pred CCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCCHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCc
Q psy2371 474 AQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESR 553 (816)
Q Consensus 474 ~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~ 553 (816)
++||++|+||||||||||||||+|+ ++|.++||||||+|++|+|+
T Consensus 641 a~AG~~g~VtIATNMAGRGtDIkl~-----------------------------------~~V~~vGGL~VIgterhes~ 685 (1025)
T PRK12900 641 AEAGQKGAVTIATNMAGRGTDIKLG-----------------------------------EGVRELGGLFILGSERHESR 685 (1025)
T ss_pred HhcCCCCeEEEeccCcCCCCCcCCc-----------------------------------cchhhhCCceeeCCCCCchH
Confidence 9999999999999999999999998 78999999999999999999
Q ss_pred chhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcHHHHHHH
Q psy2371 554 RIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQL 633 (816)
Q Consensus 554 rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~ 633 (816)
|+|+||+|||||||+||+|+||+|++|+||+.||++++.++|++++.+++++|++++++++|++||+++|++||++||++
T Consensus 686 Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~vE~~nf~iRk~l 765 (1025)
T PRK12900 686 RIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRL 765 (1025)
T ss_pred HHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCCCchhHHHhh
Q psy2371 634 LEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFK 713 (816)
Q Consensus 634 ~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 713 (816)
++||+|||.||++||++|+.+|.++++...|.+|+.++++.+|+.|. .+|++.+|...+...+....++.....
T Consensus 766 leyDdv~n~QR~vIY~~R~~~L~~~~~~~~i~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 839 (1025)
T PRK12900 766 LEYDDVLNQQREVIYTRRRNGLIKERLTSDIFDLLRDYCDTVVKKYH------KALDVDGLEEQVLRELSVEFKPERDTF 839 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh------hhccHHHHHHHHHHHhCccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999874 369999999999887754333221111
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHH
Q psy2371 714 KKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREA 793 (816)
Q Consensus 714 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea 793 (816)
...+.+++.++|.+.+.+.|..|.+.++++.++++||.++|++||.+|++||++|++||++|+||+||||||+.|||+||
T Consensus 840 ~~~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~lr~y~QkdPl~eYk~Ea 919 (1025)
T PRK12900 840 EREGVEGTADKLYNTALAFYRRKEEAVPEDIMRQIEKYAVLSVIDQKWREHLREIDSLREGINLRAYGQKDPLLEYKQEA 919 (1025)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHH
Confidence 21345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy2371 794 FKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 794 ~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|++|+.|+.+|+.+++++||+.
T Consensus 920 ~~lF~~m~~~i~~~~v~~l~~~ 941 (1025)
T PRK12900 920 YRLFVDLLREIELETLSLAFKL 941 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999874
No 10
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.1e-204 Score=1774.26 Aligned_cols=768 Identities=48% Similarity=0.794 Sum_probs=731.7
Q ss_pred ChhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccc
Q psy2371 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMR 80 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~ 80 (816)
|++++++|| +++|.+++|.++|++||++++++++|||++|+++|.+||.|+++|+++|+++|||||+||||++|++||+
T Consensus 2 ~~~~~~~~~-~~~~~l~~~~~~~~~i~~~~~~~~~lsd~~l~~~t~~~~~rl~~~~~ld~~l~eafA~vrEa~~R~~g~~ 80 (796)
T PRK12906 2 ANILKKWFD-NDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLR 80 (796)
T ss_pred hHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence 467889998 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC
Q psy2371 81 HFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~ 160 (816)
|||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+++|++|||+|++++++++
T Consensus 81 ~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~ 160 (796)
T PRK12906 81 PFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMS 160 (796)
T ss_pred CchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhh
Q psy2371 161 HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240 (816)
Q Consensus 161 ~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~ 240 (816)
+++|+.+|.||||||||++||||||||||+.+++.+++|+++|||||||||||||+|+||||||||.+...+.|. .+++
T Consensus 161 ~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~-~~~~ 239 (796)
T PRK12906 161 PDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYI-RADR 239 (796)
T ss_pred HHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHH-HHHH
Confidence 999999999999999999999999999999988999999999999999999999999999999999998889999 9999
Q ss_pred HhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhcc
Q psy2371 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHK 304 (816)
Q Consensus 241 iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~ 304 (816)
+++.|.+... ..........||.+|++.+++.||+.|..+++++++ .+||+|+++|++
T Consensus 240 ~v~~l~~~~~------~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~ 313 (796)
T PRK12906 240 FVKTLIKDEA------EDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLK 313 (796)
T ss_pred HHHHHHhhhh------ccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhc
Confidence 9999875210 001122335699999999999999999999988764 899999999999
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++||+
T Consensus 314 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~ 393 (796)
T PRK12906 314 DIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFR 393 (796)
T ss_pred CCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
++||++|+.||||+|++|+|+||.+|.|..+||++|++++.++|..||||||||+|++.|+.||..|.+.|++|.+|||+
T Consensus 394 ~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~ 473 (796)
T PRK12906 394 EIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAK 473 (796)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q psy2371 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHI 544 (816)
Q Consensus 465 ~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhV 544 (816)
++++|++|+++||++|+||||||||||||||+|| ++|.++|||||
T Consensus 474 ~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~-----------------------------------~~V~~~GGLhV 518 (796)
T PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG-----------------------------------PGVKELGGLAV 518 (796)
T ss_pred cHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC-----------------------------------cchhhhCCcEE
Confidence 9999999999999999999999999999999998 78999999999
Q ss_pred EEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCC-CCCCcccccHHHHHHHHHHHHHH
Q psy2371 545 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKI-PKGKSIESNLASYSIESAQRKIE 623 (816)
Q Consensus 545 I~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~i~~aQ~~~e 623 (816)
|||++|+|+|+|+||+|||||||+||+|+||+|++|+||++||++++.++|.++++ ++++||+++++++++++||+++|
T Consensus 519 I~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e 598 (796)
T PRK12906 519 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVE 598 (796)
T ss_pred EeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhCcHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhc
Q psy2371 624 LRNFDIRKQLLEYDDIYNNQRKIICQERNKLLES-KNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEF 702 (816)
Q Consensus 624 ~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~ 702 (816)
++||++||++++||+|+|.||++||++|+++|++ +++.+.|.+|++++++++++.|.++. +++|++++|...+...+
T Consensus 599 ~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~~~~l~~~i~~~~~~~i~~~i~~~~~~~--~~~w~~~~L~~~l~~~~ 676 (796)
T PRK12906 599 GNNYDTRKQLLQYDDVMREQREVIYKQRMQVINEDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLDALRDFIVSAM 676 (796)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHhcCCC--hhhccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999 89999999999999999999997654 67899999999998877
Q ss_pred CCC--chhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccc
Q psy2371 703 KLD--ISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILN-NKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRS 779 (816)
Q Consensus 703 ~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~ 779 (816)
+.. .+...+ ...+.++++++|.+.+.+.|+.|++.++ ++.++++||.++|++||..|++||++|++||+||||||
T Consensus 677 ~~~~~~~~~~~--~~~~~eel~~~L~~~~~~~Y~~K~~~lg~~e~~~~~eR~i~L~~ID~~W~eHL~~md~LRegI~LR~ 754 (796)
T PRK12906 677 PDEETFDFEDL--KGKSPEELKKRLLDIVEDNYAEKEKQLGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRG 754 (796)
T ss_pred CcccCCCHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 432 222222 1134589999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 780 YAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 780 y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
||||||+.|||+|||++|+.|+.+|+.+++++++++
T Consensus 755 ygQkDPl~EYk~Ea~~lF~~m~~~i~~~iv~~~~~~ 790 (796)
T PRK12906 755 YGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKA 790 (796)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999874
No 11
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.4e-203 Score=1731.89 Aligned_cols=699 Identities=37% Similarity=0.576 Sum_probs=666.0
Q ss_pred hhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhcccc
Q psy2371 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRH 81 (816)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p 81 (816)
.+++++||++++|.+|+|++++++||++++++++|||++|+++|.+||+|+ +++|+++|||||+||||++|++||+|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~e~~~~~lsd~eL~~~t~~~~~~l---~~~d~~l~eafAvvREa~~R~lg~r~ 79 (764)
T PRK12326 3 SRFWRLLGAPTEKNQSRSLALVTAAAEYEEEAADLSDEELRKAAGELNLDD---LGDSDDLAEFLAIAREAAERTLGLRP 79 (764)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHcCCCc
Confidence 478999999999999999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred chhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCH
Q psy2371 82 FDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISH 161 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~ 161 (816)
||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+++|++|||+|+++++++++
T Consensus 80 ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~ 159 (764)
T PRK12326 80 FDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTP 159 (764)
T ss_pred chHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhH
Q psy2371 162 SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPI 241 (816)
Q Consensus 162 ~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~i 241 (816)
++|+.+|.||||||||++||||||||||+.+.+.+++|+++|||||||||||||+|+||||||||.+.. +.|. .++++
T Consensus 160 ~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~-~~y~-~~~~~ 237 (764)
T PRK12326 160 EERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGE-APRG-EIAEL 237 (764)
T ss_pred HHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcch-hHHH-HHHHH
Confidence 999999999999999999999999999998889999999999999999999999999999999998877 7888 99999
Q ss_pred hhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH-----------------HHHHHHHHHhcc
Q psy2371 242 PKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI-----------------KMALRAHVLYHK 304 (816)
Q Consensus 242 v~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~-----------------~~Al~A~~l~~~ 304 (816)
++.|.+ +.||.+|++.++++||+.|.++++++++ ++||+|+++|++
T Consensus 238 v~~L~~-----------------~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 238 VRRLRE-----------------GKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred HHhcCc-----------------CCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 999975 5799999999999999999999998763 789999999999
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
|+||||+||+|+|||+||||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||+
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
++||++|+.||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.|++.||.||.+|++.||+|+||||+
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred HHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q psy2371 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHI 544 (816)
Q Consensus 465 ~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhV 544 (816)
++++|++||++||++|+||||||||||||||+|||||+ +++++|.++|||||
T Consensus 461 ~~~~EA~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~----------------------------~~~~~V~~~GGLhV 512 (764)
T PRK12326 461 NDAEEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDE----------------------------ADRDRVAELGGLHV 512 (764)
T ss_pred chHhHHHHHHhcCCCCcEEEEecCCCCccCeecCCCcc----------------------------cchHHHHHcCCcEE
Confidence 99999999999999999999999999999999999865 35589999999999
Q ss_pred EEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHH
Q psy2371 545 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIEL 624 (816)
Q Consensus 545 I~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~ 624 (816)
|+|++|+|+|+|+|++||||||||||+|+||||+||+||++||+++ + .+.+++++++|++++++++|++||+++|+
T Consensus 513 IgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~~~f~~~~--~--~~~~~~~~~~i~~~~~~~~i~~aQk~vE~ 588 (764)
T PRK12326 513 IGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANLAGE--K--LPAQPDEDGRITSPKAADLVDHAQRVAEG 588 (764)
T ss_pred EeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHHHhcCchh--h--hhcCCCCCCcCcChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 1 23477888999999999999999999999
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCC
Q psy2371 625 RNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704 (816)
Q Consensus 625 ~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 704 (816)
+||++||++++||+|+|+||++||++|+++|+++++.+.+ ..+
T Consensus 589 ~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~~~~~~~~------------~~~------------------------- 631 (764)
T PRK12326 589 QLLEIHANTWRYNQLIAQQRAIIVERRERLLRTDTAWEEL------------AEL------------------------- 631 (764)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH------------HHH-------------------------
Confidence 9999999999999999999999999999999887654220 000
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccC
Q psy2371 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKD 784 (816)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~Qkd 784 (816)
+...|+.+.+.++++.+++++|.++|++||.+|++||++|++||++||||+|||+|
T Consensus 632 ------------------------~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~q~d 687 (764)
T PRK12326 632 ------------------------APERYAELAEEVDEEVLEQAARQIMLYHLDRGWADHLAYLADVRESIHLRALGRQN 687 (764)
T ss_pred ------------------------HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCC
Confidence 11122344566788899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 785 PKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 785 Pl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|+.|||+|||++|+.|+.+|+.+++++++++
T Consensus 688 Pl~ey~~ea~~~F~~m~~~i~~~~~~~~~~~ 718 (764)
T PRK12326 688 PLDEFHRMAVDAFKSLAADAVERAQETFETA 718 (764)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999764
No 12
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.1e-204 Score=1758.29 Aligned_cols=763 Identities=56% Similarity=0.889 Sum_probs=742.1
Q ss_pred ChhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccc
Q psy2371 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMR 80 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~ 80 (816)
+++++++||++++|.+|++.++|.+||++++++.+|||++|+++|.+|++|+++|+ ||+++|||||++|||++|++||+
T Consensus 2 ~~~l~k~~g~~~~r~lk~~~k~v~~In~~e~~~~~Lsd~eL~~kT~ef~~r~~~g~-ld~~l~eafav~REa~~Rvlg~~ 80 (822)
T COG0653 2 FSLLKKLFGSGNERILKRLRKIVMQINALEAEMESLSDEELKAKTNEFKERLASGE-LDDLLPEAFAVVREASKRVLGMR 80 (822)
T ss_pred hhHHHHHcCCCCcchHHHHHHHHHHHHHhhHHHhccCHHHHHHHHHHHHHHHhcCC-hhhhhhHHHHhhhHHHHHhcCCC
Confidence 35789999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC
Q psy2371 81 HFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~ 160 (816)
||+||++|+++||.|.|+||+|||||||+++||+|+|||+|+||||||+|+|||+||++||+++|+|||+|||++..+|+
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~ 160 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMS 160 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhh
Q psy2371 161 HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240 (816)
Q Consensus 161 ~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~ 240 (816)
+++|+++|+||||||||++||||||||||+++..+++||+++|+||||||||||||||||||||||....+..|. .+++
T Consensus 161 ~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~-~~~~ 239 (822)
T COG0653 161 PEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYK-KVDD 239 (822)
T ss_pred hHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888889999 9999
Q ss_pred HhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhcc
Q psy2371 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHK 304 (816)
Q Consensus 241 iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~ 304 (816)
+++.|.. ..||.||++.|+++||+.|.++++++|+ ++||+|+.+|.+
T Consensus 240 ~v~~l~~-----------------~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 240 LVRLLSE-----------------DEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred HHHHhcc-----------------ccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhc
Confidence 9999976 4599999999999999999999999986 889999999999
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
|+||||+||+|+|||+||||+|+|||||+|||||||||||++|+++|+|+|+||||||||+|++++||||||.||+.||.
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
++||++|++||||+|++|+|++|.+|.|.++||.|++.+|.++|.+||||||||.|++.||.+|+.|++.||||+||||+
T Consensus 383 ~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 383 VIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred hccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q psy2371 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHI 544 (816)
Q Consensus 465 ~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhV 544 (816)
+|++|++||++||++|+||||||||||||||+||||++ .|.++|||||
T Consensus 463 ~h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~--------------------------------~V~~lGGL~V 510 (822)
T COG0653 463 NHAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPE--------------------------------FVMELGGLHV 510 (822)
T ss_pred cHHHHHHHHhhcCCCCccccccccccCCcccccCCCHH--------------------------------HHHHhCCcEE
Confidence 99999999999999999999999999999999998732 4999999999
Q ss_pred EEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHH
Q psy2371 545 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIEL 624 (816)
Q Consensus 545 I~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~ 624 (816)
|+|++|+|+|+|||+|||+|||||||+|+||+|++|+||++||+|++..+|.+++++++++|+++++++++++||+++|+
T Consensus 511 IgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQk~vE~ 590 (822)
T COG0653 511 IGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFASDRLPALMDKLGLKEGEAIESKMVTRAVERAQRKVEG 590 (822)
T ss_pred EecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhcchhhHHHHHhhcCCccCccccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCC
Q psy2371 625 RNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704 (816)
Q Consensus 625 ~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 704 (816)
+||++||++++||+|||.||++||++|+++|++.++.+.+..|++++++.+|..|.+....++.|+++.|...+...+..
T Consensus 591 ~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 670 (822)
T COG0653 591 RNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWDLEGLIDELKGTVHP 670 (822)
T ss_pred cCCcHHhhHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999888
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccC
Q psy2371 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKD 784 (816)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~Qkd 784 (816)
..++..|.......+++++.+.+.+.+.|+.+++ ++++.++.++|.++|+.||..|++||+.|++||++||||+|||+|
T Consensus 671 ~~~~~~~~~~~~~~~~l~e~i~~~~~~~~~~k~~-~~~~~~~~~~r~v~l~~iD~~W~ehl~~md~Lr~~I~lR~y~qk~ 749 (822)
T COG0653 671 DLPINKSDLEDEAEEELAERILKAADEAYDKKEE-VGPEAMREFERYVMLQVLDYLWREHLDAMDALREGIHLRGYAQKD 749 (822)
T ss_pred cchhHHHhhhcccHHHHHHHHHHHHHHHHHhhhc-cCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 7766655544334689999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 785 PKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 785 Pl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|+.|||+|||++|+.|+..|+.++++.++++
T Consensus 750 Pl~eyk~e~~~~Fe~m~~~i~~~~~~~l~~~ 780 (822)
T COG0653 750 PLIEYKREAFELFEDMLEDIKEDVVKRLFKV 780 (822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999873
No 13
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.7e-198 Score=1722.92 Aligned_cols=777 Identities=42% Similarity=0.691 Sum_probs=724.4
Q ss_pred ChhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhc--
Q psy2371 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLK-- 78 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg-- 78 (816)
|++++++||++++|.+|+|+++|++||+++++|++|||+||+++|.+||+|+++|+++|++||++||++||+++|++|
T Consensus 2 ~~~~~k~~g~~~~r~lk~~~~~~~~In~~e~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~~l~eafal~re~~~r~lg~~ 81 (970)
T PRK12899 2 LDFLKRFFGSSQERILKRFQKLVEKVNAYDEKFSSLSDDELRNKTAELKQRYQDGESLDKLLPEAYGVVKNVCRRLAGTP 81 (970)
T ss_pred hHHHHHHhCCccHhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCchHHHHHHHhCCCHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------cccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 79 -----------MRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 79 -----------~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
|+|+++|.+++++++.|.||+|+||||||+||+||++++++.|.+|||||||+|||.||++||++++++
T Consensus 82 ~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~ 161 (970)
T PRK12899 82 VEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRW 161 (970)
T ss_pred cccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhh-hccCCCccccccceEEEecchhhhhhhccCCcceeccc
Q psy2371 148 LGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDN-MVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226 (816)
Q Consensus 148 lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~-~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~ 226 (816)
+|++|++++||++.++++.+|+||||||||||||||||+|+ |..+..++++|+++|+|||||||||+||||||||||||
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLiDEArTPLIISg~ 241 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILIDEARTPLIISGP 241 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhhhccCCceeeeCC
Confidence 99999999999999998899999999999999999999999 77776778999999999999999999999999999999
Q ss_pred cccchhhhHHHHhhHhhhccch-h------------------h---------------hhh----------------hhh
Q psy2371 227 IKNNAQYFYKIINPIPKLLVPE-I------------------D---------------TKN----------------IKK 256 (816)
Q Consensus 227 ~~~~~~~y~~~i~~iv~~L~~~-~------------------~---------------~~~----------------~~~ 256 (816)
....+..|. .++.+|..|... . + +.. ..+
T Consensus 242 ~~~~~~~Y~-~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 320 (970)
T PRK12899 242 GEKHNPVYF-ELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRV 320 (970)
T ss_pred CccccHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhccccchhhhhhh
Confidence 998888888 777666665100 0 0 000 000
Q ss_pred hc-----------------------ccccCCCCCeEEeCCCcEEEechhhHHHH--------HHHH--------------
Q psy2371 257 NI-----------------------KYTKKNTGDYIIDYETNQVFLTENGYEKY--------ENIL-------------- 291 (816)
Q Consensus 257 ~~-----------------------~~~~~~~~~y~vd~~~~~v~lt~~g~~~~--------e~~l-------------- 291 (816)
.. ......+.||.+|++.+++.||+.|..++ ++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~ 400 (970)
T PRK12899 321 REHPDLRAMIDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEED 400 (970)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccchhhhhhccccc
Confidence 00 00112245999999999999999999874 5444
Q ss_pred ---------------------H-------HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccc
Q psy2371 292 ---------------------I-------KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKE 343 (816)
Q Consensus 292 ---------------------~-------~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe 343 (816)
. .+||+|+++|++|+||||+||+|+|||+||||+|+||+||+|||||||+||
T Consensus 401 ~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE 480 (970)
T PRK12899 401 ETLSPADKINRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKE 480 (970)
T ss_pred cccCHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhc
Confidence 0 699999999999999999999999999999999999999999999999999
Q ss_pred cceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHH
Q psy2371 344 NLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMD 423 (816)
Q Consensus 344 ~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~ 423 (816)
||+|+++++|+|+|||||||++|++|+||||||+++++||+++||++|+.||||+|++|+|++|.+|.|..+||.|++++
T Consensus 481 ~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~e 560 (970)
T PRK12899 481 HVTIRKESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAE 560 (970)
T ss_pred CCCCCCCceeeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchh
Q psy2371 424 IKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDS 503 (816)
Q Consensus 424 i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~ 503 (816)
+.++|++||||||||.|++.||.||.+|.+.||+|+||||+++++|++||++||++|+||||||||||||||+||
T Consensus 561 i~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~----- 635 (970)
T PRK12899 561 IASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD----- 635 (970)
T ss_pred HHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCCcEEEeeccccCCcccccC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhh
Q psy2371 504 YIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~ 583 (816)
++|.++||||||+|++|+|+|+|+|++||||||||||+|+||||+||+||
T Consensus 636 ------------------------------~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~ 685 (970)
T PRK12899 636 ------------------------------EEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLM 685 (970)
T ss_pred ------------------------------chHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHH
Confidence 78999999999999999999999999999999999999999999999999
Q ss_pred hhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHH
Q psy2371 584 KFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEI 663 (816)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~ 663 (816)
++||++++.++|.+++++++++|.+++++++|++||+++|++||++||++++||+|||+||++||++|+++|+++++.+.
T Consensus 686 ~~f~~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~iL~~~~~~~~ 765 (970)
T PRK12899 686 RLFASPKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDVLHAEDIFVV 765 (970)
T ss_pred HHhCcHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCCCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhc---
Q psy2371 664 IKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKIL--- 740 (816)
Q Consensus 664 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--- 740 (816)
+.+|++++++++++.|+++. .+++|++++|..++...++...+...+ ....+.++++++|.+.+.+.|..|.+.+
T Consensus 766 i~~~~~~~i~~~v~~~~~~~-~~~~~~~~~L~~~l~~~~~~~~~~~~~-~~~~~~e~l~~~l~~~~~~~y~~k~~~l~~~ 843 (970)
T PRK12899 766 AKEIIEHVALMLASLILKDR-HADGCSLPKLEEWLSYSFPVKLDDQEL-RRLGDTDAIAEKIADLLIEAFQVKFSSMVAE 843 (970)
T ss_pred HHHHHHHHHHHHHHHhcCcc-chhhccHHHHHHHHHHhcCCCCCHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999998765 467899999999998877543333222 2212458999999999999999999998
Q ss_pred -----C-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2371 741 -----N-----NKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIK 810 (816)
Q Consensus 741 -----~-----~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~ 810 (816)
+ ++.++++||.++|++||..|++||++|++||+|||||+|||+||+.|||+|||++|+.|+.+|+.++++
T Consensus 844 ~~~~~~~~~~~~e~~~~~er~i~L~~ID~~W~eHL~~md~LRe~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~i~~~iv~ 923 (970)
T PRK12899 844 FTEAIGEAVDAQGICNDILRSVMIMHIDEQWKIHLVDMDLLRSEVGLRTVGQKDPLIEFKHESFLLFESLIRDIRIAIVK 923 (970)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy2371 811 KIMTI 815 (816)
Q Consensus 811 ~l~~~ 815 (816)
++|++
T Consensus 924 ~l~~~ 928 (970)
T PRK12899 924 HLFRL 928 (970)
T ss_pred HHHhc
Confidence 99864
No 14
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8.7e-194 Score=1673.95 Aligned_cols=723 Identities=55% Similarity=0.876 Sum_probs=695.6
Q ss_pred HHhhHHHHhcCChHHHHHHHHHHHHhc-ccCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCceeeecCCC
Q psy2371 26 INELESVMQKLSDEELQNQTSKLKQSI-HSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGE 104 (816)
Q Consensus 26 i~~~~~~~~~lsd~~l~~~~~~~~~~~-~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~Iaem~TGE 104 (816)
||+++++|++|||++|+++|.+||+|+ ++|+++|+++|||||++|||++|++||+|||||++|+++||+|+||||+|||
T Consensus 1 i~~~~~~~~~lsd~~l~~~t~~~~~~l~~~g~~l~~~l~eafA~vrEa~~R~lg~~p~~vQlig~~~l~~G~Iaem~TGe 80 (745)
T TIGR00963 1 INALEEDYEKLSDEELRAKTNEFKDRLQKQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80 (745)
T ss_pred CchhhHHHHcCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhCCCccchHHhhhhhhcCCceeeecCCC
Confidence 689999999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhh
Q psy2371 105 GKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDY 184 (816)
Q Consensus 105 GKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDy 184 (816)
||||||+||+|+++|.|++|||||||+|||.||++||+++|++|||+|++++|++++++|+.+|.|||+|||||+|||||
T Consensus 81 GKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDy 160 (745)
T TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160 (745)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCC
Q psy2371 185 LRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKN 264 (816)
Q Consensus 185 LrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~ 264 (816)
|||+|+...+.+++++++|+|||||||||+|++|||||||||.+.+..+|. .++.|++.|.+
T Consensus 161 Lrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~-~a~~i~r~L~~----------------- 222 (745)
T TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL-QANRFAKALEK----------------- 222 (745)
T ss_pred HhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH-HHHHHHHhhcc-----------------
Confidence 999998888889999999999999999999999999999999888888999 89999999975
Q ss_pred CCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhccCcceEEeCCeEEEeeccccccccc
Q psy2371 265 TGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKT 328 (816)
Q Consensus 265 ~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~g 328 (816)
+.||.+|++.++++||+.|.+++|++++ .+||+|+++|++|+||||+||+|+|||+||||+|+|
T Consensus 223 ~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~g 302 (745)
T TIGR00963 223 EVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEG 302 (745)
T ss_pred CCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCC
Confidence 6799999999999999999999998763 999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCe
Q psy2371 329 RRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDK 408 (816)
Q Consensus 329 rr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~ 408 (816)
|+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||+++++||.++||++|+.||||+|++|+|+||.
T Consensus 303 r~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~ 382 (745)
T TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDL 382 (745)
T ss_pred CccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCc
Q psy2371 409 IYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNM 488 (816)
Q Consensus 409 v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnm 488 (816)
||.|..+||+||++++.++|++||||||||+|++.||.|+..|++.|++|++|||++++||++|+++||++|+|||||||
T Consensus 383 i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnm 462 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
|||||||++ ++|.++||||||||++|+|+|+|+||+|||||||+
T Consensus 463 AgRGtDI~l------------------------------------~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 463 AGRGTDIKL------------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred ccCCcCCCc------------------------------------cchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 999999986 47999999999999999999999999999999999
Q ss_pred CceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHH
Q psy2371 569 PGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIIC 648 (816)
Q Consensus 569 pG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy 648 (816)
||+|+||+|++|+||++||++++.++|++++++++++|+++++++++++||+++|++||++||++++||+|+|+||++||
T Consensus 507 ~G~s~~~ls~eD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY 586 (745)
T TIGR00963 507 PGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIY 586 (745)
T ss_pred CcceEEEEeccHHHHHhhhhHHHHHHHHHcCCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCCC--chhHHHhhhcCCHHHHHHHHH
Q psy2371 649 QERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLD--ISFKIFFKKKYTIKDFFIKIL 726 (816)
Q Consensus 649 ~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 726 (816)
++|+++|+++++.+.+.+|++++++++++.|+++...+++|++++|..++...++.. .+...+ ...+.++++++|.
T Consensus 587 ~~R~~il~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 664 (745)
T TIGR00963 587 AERRRILESEDLSELILQMLESTLDEIVDAYINEQKPSEEWDLEGLIEKLKTLFLLDGDLTPEDL--ENLTSEDLKELLL 664 (745)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHHHhCccCCCCHHHH--cCCCHHHHHHHHH
Confidence 999999999999999999999999999999987776778999999999998877542 222222 1124588999999
Q ss_pred HHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHH
Q psy2371 727 YTFDKKYENKIKILNNK---KFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNL 803 (816)
Q Consensus 727 ~~~~~~~~~~~~~~~~~---~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~ 803 (816)
+.+.+.|..|++.++++ .++++||.++|++||.+|++||++|++||++|+||+|||+||+.|||+|||++|+.|+.+
T Consensus 665 ~~~~~~~~~k~~~~~~~~~~~~~~~er~~~L~~iD~~W~~hl~~m~~Lr~~i~lr~y~q~dp~~ey~~e~~~~F~~m~~~ 744 (745)
T TIGR00963 665 EKIRAAYDEKEAELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFLEMLED 744 (745)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccCChHHHHHHHHHHHHHHHHhh
Confidence 99999999999999877 799999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q psy2371 804 I 804 (816)
Q Consensus 804 i 804 (816)
|
T Consensus 745 i 745 (745)
T TIGR00963 745 I 745 (745)
T ss_pred C
Confidence 4
No 15
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-191 Score=1677.87 Aligned_cols=751 Identities=47% Similarity=0.743 Sum_probs=724.1
Q ss_pred hhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccch
Q psy2371 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFD 83 (816)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~ 83 (816)
.+++||+++.+.+++|++++++||++++++++|||++|+++|.+||.|+++|+++|+++|||||+||||++|++||+|||
T Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~lsd~~L~~~~~~~~~~l~~~~~l~~~~~eafA~vrea~~R~~g~~p~~ 81 (790)
T PRK09200 2 KKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYD 81 (790)
T ss_pred cchhcCCccHhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC-HH
Q psy2371 84 VQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS-HS 162 (816)
Q Consensus 84 VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~-~~ 162 (816)
||++|++++|+|+||||+|||||||||+||+++++|.|++|||||||+|||.||++||+++|+++|++|++++|+++ ++
T Consensus 82 vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~ 161 (790)
T PRK09200 82 VQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDAS 161 (790)
T ss_pred HHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHh
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv 242 (816)
+|+.+|+|||+|||||+||||||+|+|..+....++++++|+|||||||||||+|+|||||||+.+.+++.|. .+++++
T Consensus 162 ~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~-~~~~~~ 240 (790)
T PRK09200 162 EKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYH-IAAKFV 240 (790)
T ss_pred HHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHH-HHHHHH
Confidence 9999999999999999999999999998777788999999999999999999999999999999988888998 999999
Q ss_pred hhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhccCc
Q psy2371 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHKNK 306 (816)
Q Consensus 243 ~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~~~ 306 (816)
..|.+ +.||.+|++.++++||+.|..+++++++ .+||+|+++|++|+
T Consensus 241 ~~l~~-----------------~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 241 KTLEE-----------------DVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred Hhccc-----------------CCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 99975 5699999999999999999999988754 79999999999999
Q ss_pred ceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHH
Q psy2371 307 HYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEI 386 (816)
Q Consensus 307 dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~ 386 (816)
||||.||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++||.++
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch
Q psy2371 387 YKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466 (816)
Q Consensus 387 Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~ 466 (816)
||++|+.||||+|++|+|+||.+|.+..+|+.++++++.+.|..|+||||||+|++.|+.|+..|.+.|++|.+|||+++
T Consensus 384 Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 384 YNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred hCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE
Q psy2371 467 KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG 546 (816)
Q Consensus 467 ~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~ 546 (816)
++|+.++++||++|+||||||||||||||+|| |+|.++|||||||
T Consensus 464 ~~e~~~i~~ag~~g~VlIATdmAgRG~DI~l~-----------------------------------~~V~~~GGL~VI~ 508 (790)
T PRK09200 464 AKEAQIIAEAGQKGAVTVATNMAGRGTDIKLG-----------------------------------EGVHELGGLAVIG 508 (790)
T ss_pred HHHHHHHHHcCCCCeEEEEccchhcCcCCCcc-----------------------------------cccccccCcEEEe
Confidence 99999999999999999999999999999998 8899999999999
Q ss_pred ecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCC---CCcccccHHHHHHHHHHHHHH
Q psy2371 547 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPK---GKSIESNLASYSIESAQRKIE 623 (816)
Q Consensus 547 te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~i~~aQ~~~e 623 (816)
||+|+|+|+|+||+|||||||+||+|++|+|++|+||++||++++.+++.+++.++ ++||.++++++++++||+++|
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aQ~~~e 588 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTDAQRLTGLLFNRKVHKIVVKAQRISE 588 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhccHHHHHHHHHcCCccccCCcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877 889999999999999999999
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHh
Q psy2371 624 LRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESK--NISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKE 701 (816)
Q Consensus 624 ~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (816)
++||++||++++||++||.||++||++|+++|.++ ++.+.+..|++++++.+++.++++...+++|++++|.+.+...
T Consensus 589 ~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (790)
T PRK09200 589 GAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEI 668 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHhcCCccChhhhcHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 8999999999999999999998766567899999999999876
Q ss_pred cCCCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccc
Q psy2371 702 FKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNK-KFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSY 780 (816)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y 780 (816)
+... .. .+.++++++|.+.+.+.|+.|.+.++++ .++++||.++|++||.+|++||++|++||+|||||||
T Consensus 669 ~~~~-~~-------~~~~~~~~~l~~~~~~~y~~k~~~lg~e~~~~e~eR~i~L~~ID~~W~eHLd~Md~LRegI~LRsY 740 (790)
T PRK09200 669 LSNT-NF-------PDKKEVVQFLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQY 740 (790)
T ss_pred hccc-cc-------CCHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6411 11 1357899999999999999999999866 7999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 781 AQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 781 ~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|||||+.|||+|||++|+.|+.+|+.++++++++.
T Consensus 741 gQKDPL~EYkkEa~~lFe~M~~~I~~~~v~~l~~~ 775 (790)
T PRK09200 741 GQRNPIREYQKEALESFEYMYENIKKDMVRNLLLS 775 (790)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999863
No 16
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6.2e-189 Score=1641.98 Aligned_cols=732 Identities=42% Similarity=0.652 Sum_probs=695.4
Q ss_pred chhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhhcc
Q psy2371 12 NQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIA 91 (816)
Q Consensus 12 ~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~ 91 (816)
+.|.+|+|++++++||++++++++|||+||+++|.+||+|+++|+++|+++|||||+||||++|++||+||+||++++++
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~lsd~~L~~~t~~~~~~l~~~~~ld~~l~eafA~vrEa~~R~lglrpydVQlig~l~ 81 (762)
T TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81 (762)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCC-----CCHHHHHh
Q psy2371 92 LHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSE-----ISHSLKKK 166 (816)
Q Consensus 92 L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~-----~~~~~r~~ 166 (816)
+++|.|+||+|||||||||++|+++++|.|++|||||||+|||.||++||+++|++||++|++++++ +++++++.
T Consensus 82 l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~ 161 (762)
T TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRK 161 (762)
T ss_pred hcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998875 56788999
Q ss_pred hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhcc
Q psy2371 167 SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLV 246 (816)
Q Consensus 167 ~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~ 246 (816)
+|+|||+|||||+||||||+|+|+.+....++++++|+|||||||||+|+|+||||||||+..++.+|. .++.+++.|.
T Consensus 162 ~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~-~~~~~v~~l~ 240 (762)
T TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYH-IADTFVRTLK 240 (762)
T ss_pred hCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHH-HHHHHHHhcC
Confidence 999999999999999999999998877788999999999999999999999999999999888888999 9999999998
Q ss_pred chhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhccCcceEE
Q psy2371 247 PEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHKNKHYII 310 (816)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~~~dYiV 310 (816)
+ +.||.+|++.++++||+.|..++|++|+ .+||+|+++|++|+||||
T Consensus 241 ~-----------------~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 241 E-----------------DVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred C-----------------CCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 6 6799999999999999999999999864 899999999999999999
Q ss_pred eCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCe
Q psy2371 311 KNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLE 390 (816)
Q Consensus 311 ~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~ 390 (816)
+||+|+|||+||||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++||.++||++
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~ 383 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS 383 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHH
Q psy2371 391 TITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEA 470 (816)
Q Consensus 391 vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa 470 (816)
|+.||||+|++|+|+||.||.+..+|+.++++++.++|..|+||||||+|++.|+.|+..|.+.|++|.+|||+++++|+
T Consensus 384 v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~ 463 (762)
T TIGR03714 384 VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEA 463 (762)
T ss_pred EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCC
Q psy2371 471 QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERH 550 (816)
Q Consensus 471 ~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~p 550 (816)
.++++||++|+||||||||||||||+|| ++|.++||+|||++++|
T Consensus 464 ~ii~~ag~~g~VlIATdmAgRGtDI~l~-----------------------------------~~v~~~GGL~vIit~~~ 508 (762)
T TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG-----------------------------------KGVAELGGLAVIGTERM 508 (762)
T ss_pred HHHHHcCCCCeEEEEccccccccCCCCC-----------------------------------ccccccCCeEEEEecCC
Confidence 9999999999999999999999999998 78999999999999999
Q ss_pred CCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCC----CcccccHHHHHHHHHHHHHHHhc
Q psy2371 551 ESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKG----KSIESNLASYSIESAQRKIELRN 626 (816)
Q Consensus 551 es~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~i~~aQ~~~e~~~ 626 (816)
++.|+++||+|||||||+||+|+||+|++|+||++||++++.++|.+++++++ +||+++++++++++||+++|++|
T Consensus 509 ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~ 588 (762)
T TIGR03714 509 ENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSKLKPSALFKRRFRKIVEKAQRASEDKG 588 (762)
T ss_pred CCcHHHHHhhhcccCCCCceeEEEEEccchhhhhhcchHHHHHHHHHcCCCcccccCcccccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765 79999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCCC
Q psy2371 627 FDIRKQLLEYDDIYNNQRKIICQERNKLLESKN-ISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLD 705 (816)
Q Consensus 627 ~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 705 (816)
|++||++++||+|||+||++||++|++||++++ +.+.+.+|++++++.+++.|..+ ++ ..|...+...+...
T Consensus 589 ~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~l~~~~~~~~~~~ 661 (762)
T TIGR03714 589 ESAREQTNEFEESLSIQRENIYAERNRLIEGSDFLDDDVDQIIDDVFNMYAEEQDLS----NK---SLLKRFILENLSYQ 661 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhccc----cH---HHHHHHHHHHcCCC
Confidence 999999999999999999999999999999998 89999999999999999987322 11 44667776665332
Q ss_pred chhHHHhh--hcCCHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccc
Q psy2371 706 ISFKIFFK--KKYTIKDFFIKILYTFDKKYENKIKILNN-KKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQ 782 (816)
Q Consensus 706 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~Q 782 (816)
.. .+.. ...+.++++++|.+.+...|+.|++.+++ +.++++||.++|++||.+|++||++|++||+|||||||||
T Consensus 662 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~r~~~L~~iD~~W~~hl~~m~~lr~~i~lr~~~q 739 (762)
T TIGR03714 662 FK--NDPDEFDLKNKEAIKDFLKEIADKELSEKKKVLNNDYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQ 739 (762)
T ss_pred hh--hhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 11 1111 11245889999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Q psy2371 783 KDPKREYKREAFKLFHKMLNLIK 805 (816)
Q Consensus 783 kdPl~ey~~ea~~~F~~m~~~i~ 805 (816)
+||+.|||+|||++|+.|+.+|+
T Consensus 740 ~dPl~ey~~e~~~~F~~m~~~i~ 762 (762)
T TIGR03714 740 RNPIFEYHKEALESYEYMKKEIK 762 (762)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999874
No 17
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.7e-154 Score=1336.79 Aligned_cols=577 Identities=43% Similarity=0.663 Sum_probs=556.9
Q ss_pred cchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcc-cCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhh
Q psy2371 11 RNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIH-SGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGG 89 (816)
Q Consensus 11 ~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~-~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~ 89 (816)
.+.+.++++.+++++||+++++|++|||+||+++|.+||++++ +|+++|+++|||||+||||++|++||+|||||++|+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~L~~~~~~~~~~l~~~~~~~~~~l~eafA~~rEa~~R~lg~~p~~VQ~~~~ 112 (656)
T PRK12898 33 VRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDALLAEAFALVREASGRVLGQRHFDVQLMGG 112 (656)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 3578999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred ccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcC
Q psy2371 90 IALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYE 169 (816)
Q Consensus 90 ~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~ 169 (816)
|++++|+||||+||||||+||+||++++++.|++|||||||+|||.||++||+++|++|||+|++++|++++++|+.+|+
T Consensus 113 ~~ll~G~Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y~ 192 (656)
T PRK12898 113 LALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYG 192 (656)
T ss_pred HHHhCCCeeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEECCCcchhhhhhhhhcc-------------------CCCccccccceEEEecchhhhhhhccCCcceeccccccc
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVF-------------------NSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNN 230 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~-------------------~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~ 230 (816)
||||||||++||||||||||+. +.+.+++|+++|||||||||||||||+||||||||....
T Consensus 193 ~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~ 272 (656)
T PRK12898 193 ADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEA 272 (656)
T ss_pred CCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCC
Confidence 9999999999999999999987 556789999999999999999999999999999997665
Q ss_pred --hhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------
Q psy2371 231 --AQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI---------------- 292 (816)
Q Consensus 231 --~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~---------------- 292 (816)
.+.|. .++.+++.|.+ +.||.+|++.+++.||+.|..+++++++
T Consensus 273 ~~~~~y~-~~~~~~~~l~~-----------------~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i 334 (656)
T PRK12898 273 DEAEVYR-QALELAAQLKE-----------------GEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELV 334 (656)
T ss_pred chhHHHH-HHHHHHHhcCC-----------------CCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHH
Confidence 57888 99999999976 6799999999999999999999988753
Q ss_pred HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcc
Q psy2371 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGM 372 (816)
Q Consensus 293 ~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~Gm 372 (816)
++||+|+++|++|+||||+||+|+|||+||||+|+||+||+|||||||+||||+|+++++|+|+|||||||++|++|+||
T Consensus 335 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~Gm 414 (656)
T PRK12898 335 RQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGM 414 (656)
T ss_pred HHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
|||++++++||.++|+++|+.||||+|.+|+++++.+|.+..+|+.+|++++.+.+..|+||||||+|++.|+.|+..|.
T Consensus 415 TGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~ 494 (656)
T PRK12898 415 TGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLR 494 (656)
T ss_pred cCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred hCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhh
Q psy2371 453 KNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532 (816)
Q Consensus 453 ~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (816)
+.|++|.+|||+++++|+.++++||++|+||||||||||||||+++
T Consensus 495 ~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~---------------------------------- 540 (656)
T PRK12898 495 EAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE---------------------------------- 540 (656)
T ss_pred HCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCc----------------------------------
Confidence 9999999999999999999999999999999999999999999987
Q ss_pred hhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHH
Q psy2371 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLAS 612 (816)
Q Consensus 533 ~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 612 (816)
++|.++|||||||||+|+|+|+|+||+|||||||+||+|++|+|++|+||+.|+++++.+++..+++.+ .+.+++++
T Consensus 541 -~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 617 (656)
T PRK12898 541 -PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIRRMELLGP--RGGRALGA 617 (656)
T ss_pred -cchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhhhHHHHHHHHHhcCCC--cccchHHH
Confidence 789999999999999999999999999999999999999999999999999999999999988887654 36689999
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHhhHHHHHH
Q psy2371 613 YSIESAQRKIELRNFDIRKQLLEYDDIYNN 642 (816)
Q Consensus 613 ~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~ 642 (816)
+++++||+++|+.||++||++++||++++.
T Consensus 618 ~~~~~aQ~~~e~~~~~~Rk~~~~~d~~~~~ 647 (656)
T PRK12898 618 LLLRRAQRRAERLHARARRALLHADEQLDK 647 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998775
No 18
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=100.00 E-value=2.7e-74 Score=609.80 Aligned_cols=266 Identities=61% Similarity=0.987 Sum_probs=244.6
Q ss_pred hhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccch
Q psy2371 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFD 83 (816)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~ 83 (816)
|+|+||+++++.+++|++++++|++++++++.+||++|++++.+||.++++++++++++|++||++|||++|++|++||+
T Consensus 1 ~kki~gs~~e~~lk~~~~~~~~i~~~~~~~~~ls~~~L~~~~~~~~~~~~~~~~~~~~l~e~~Al~rea~~r~~g~~p~~ 80 (266)
T PF07517_consen 1 LKKIFGSKNERELKRYQKIVDKINALEKELKALSDEELQEKTKELRERLREGESLDDILPEAFALVREAARRTLGLRPYD 80 (266)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHTHHHHHTTSHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTS----H
T ss_pred CcceeeCCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHcCCcccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH
Q psy2371 84 VQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL 163 (816)
Q Consensus 84 VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~ 163 (816)
||++|+++|++|+|+||+|||||||+++||++++||.|++|||||+|+|||+||++||+|||++|||+|+++++++++++
T Consensus 81 vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 81 VQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEE 160 (266)
T ss_dssp HHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHH
T ss_pred HHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhh
Q psy2371 164 KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPK 243 (816)
Q Consensus 164 r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~ 243 (816)
|+++|.|||+|||+++|+||||||++..+....++|+++|+|||||||||||+|++||+|||
T Consensus 161 r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea~~pl~is~------------------ 222 (266)
T PF07517_consen 161 RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEARTPLIISG------------------ 222 (266)
T ss_dssp HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGCCSEEEEEE------------------
T ss_pred HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecCcccccccc------------------
Confidence 99999999999999999999999999988888889999999999999999999999999988
Q ss_pred hccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccc
Q psy2371 244 LLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTG 323 (816)
Q Consensus 244 ~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tG 323 (816)
T Consensus 223 -------------------------------------------------------------------------------- 222 (266)
T PF07517_consen 223 -------------------------------------------------------------------------------- 222 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 324 RLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 324 r~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
+|||++|++++.|+++||||+||++|++++||||||+++++||+
T Consensus 223 -----------------~Ke~~~i~~~~~t~a~is~q~~f~~Y~~l~GmTGTa~~~~~e~~ 266 (266)
T PF07517_consen 223 -----------------AKEGLKITPESLTLASISYQNFFRLYPKLSGMTGTAKTEAKEFW 266 (266)
T ss_dssp -----------------HHTTS----SEEEEEEEEHHHHHTTSSEEEEEESSTGGGHHHHH
T ss_pred -----------------cccCCccCCCCeEEEEeehHHHHHhcchheeeCCCChhhHhhcC
Confidence 15789999999999999999999999999999999999999986
No 19
>KOG0330|consensus
Probab=100.00 E-value=3.6e-50 Score=430.09 Aligned_cols=332 Identities=20% Similarity=0.247 Sum_probs=266.0
Q ss_pred hhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC---cEEEEeCcHHHHH
Q psy2371 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ---GVHIVTISDYLAK 135 (816)
Q Consensus 61 ~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~---~V~VvT~n~yLA~ 135 (816)
+-|+.+..|++.++ ..|++||..++|+.++|+ |+-++||+|||++|+||++...|... .++|+|||||||.
T Consensus 68 v~~~L~~ac~~l~~----~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 68 VHPELLEACQELGW----KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQ 143 (476)
T ss_pred cCHHHHHHHHHhCc----CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHH
Confidence 46777777777665 479999999999999998 99999999999999999996555432 4999999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 136 RDAEWMSVLYNWLGLSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 136 Rd~e~~~~l~~~lglsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
|+++.+.++...+||.|.++.||++.. ....+..+||+++|||+| .|++... ....++.++|+|+||||++|
T Consensus 144 QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL-----~dhl~~T-kgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 144 QIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRL-----WDHLENT-KGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred HHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHH-----HHHHHhc-cCccHHHhHHHhhchHHhhh
Confidence 999999999999999999999999854 344556899999999998 4544322 24567889999999999999
Q ss_pred hhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHH
Q psy2371 214 IDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK 293 (816)
Q Consensus 214 iDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~ 293 (816)
|+- |.+.++.|++.+|. ++++++||++...++.++.
T Consensus 218 -d~d----------------F~~~ld~ILk~ip~-------------------------erqt~LfsATMt~kv~kL~-- 253 (476)
T KOG0330|consen 218 -DMD----------------FEEELDYILKVIPR-------------------------ERQTFLFSATMTKKVRKLQ-- 253 (476)
T ss_pred -hhh----------------hHHHHHHHHHhcCc-------------------------cceEEEEEeecchhhHHHH--
Confidence 553 66689999998886 5889999999999999876
Q ss_pred HHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhccc
Q psy2371 294 MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMT 373 (816)
Q Consensus 294 ~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmT 373 (816)
+|. + ++.+. |.+...-+|+.+
T Consensus 254 ---ras--l---------~~p~~----------------------------v~~s~ky~tv~~----------------- 274 (476)
T KOG0330|consen 254 ---RAS--L---------DNPVK----------------------------VAVSSKYQTVDH----------------- 274 (476)
T ss_pred ---hhc--c---------CCCeE----------------------------EeccchhcchHH-----------------
Confidence 221 0 00010 111111111111
Q ss_pred ccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh
Q psy2371 374 GTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK 453 (816)
Q Consensus 374 GTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~ 453 (816)
+.+. ++|.....|-..++..+++. .|.|++|||+++..++.+|-.|..
T Consensus 275 ---------lkQ~---------------------ylfv~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~ 322 (476)
T KOG0330|consen 275 ---------LKQT---------------------YLFVPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRN 322 (476)
T ss_pred ---------hhhh---------------------eEeccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHh
Confidence 2232 23444556666788877654 689999999999999999999999
Q ss_pred CCCCeEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHh
Q psy2371 454 NNLPHSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWML 531 (816)
Q Consensus 454 ~gi~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (816)
.|+.+.-|||. |..|...+-.+......|+||||+|+||+||
T Consensus 323 lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi------------------------------------ 366 (476)
T KOG0330|consen 323 LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI------------------------------------ 366 (476)
T ss_pred cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC------------------------------------
Confidence 99999999998 4566667766655566899999999999999
Q ss_pred hhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 532 LHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 532 ~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|. +|||||.|.+...|+||+|||||+|++|.++.+||..|
T Consensus 367 --p~Vd-----~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 367 --PHVD-----VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred --CCce-----EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 6777 99999999999999999999999999999999999877
No 20
>KOG0331|consensus
Probab=100.00 E-value=1.5e-49 Score=448.06 Aligned_cols=336 Identities=18% Similarity=0.193 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---------CCcEEEEeCcH
Q psy2371 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---------GQGVHIVTISD 131 (816)
Q Consensus 63 ~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---------g~~V~VvT~n~ 131 (816)
++.+-++.++.+- .|+|||.+++|.+++|+ |+.++||+||||+|+||++.+... |..|+|++|||
T Consensus 100 ~~~~~~lk~~g~~----~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 100 EELMKALKEQGFE----KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred HHHHHHHHhcCCC----CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 3444444444333 79999999999999999 999999999999999999988765 45699999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecch
Q psy2371 132 YLAKRDAEWMSVLYNWLGLSIGVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEI 209 (816)
Q Consensus 132 yLA~Rd~e~~~~l~~~lglsv~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEa 209 (816)
|||.|+...+..+...+++++.|++||.+ ++.+....++||++|||||+ .|.|. .+.+.++.+.|+|+|||
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl-----~d~le--~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRL-----IDLLE--EGSLNLSRVTYLVLDEA 248 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHH-----HHHHH--cCCccccceeEEEeccH
Confidence 99999999999999999999999999987 67788888999999999998 56653 34678899999999999
Q ss_pred hhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHH
Q psy2371 210 DSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYEN 289 (816)
Q Consensus 210 Ds~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~ 289 (816)
|.|| |++ |.+++.+|+..+++. ..+++++|++....++.
T Consensus 249 DrMl-dmG----------------Fe~qI~~Il~~i~~~------------------------~rQtlm~saTwp~~v~~ 287 (519)
T KOG0331|consen 249 DRML-DMG----------------FEPQIRKILSQIPRP------------------------DRQTLMFSATWPKEVRQ 287 (519)
T ss_pred Hhhh-ccc----------------cHHHHHHHHHhcCCC------------------------cccEEEEeeeccHHHHH
Confidence 9999 876 778999999999541 23688899999988877
Q ss_pred HHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcch
Q psy2371 290 ILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKI 369 (816)
Q Consensus 290 ~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l 369 (816)
+. ..++. +|+..+ + |... +.....+|+.
T Consensus 288 lA-------~~fl~---~~~~i~----i-----g~~~-----------------------~~~a~~~i~q---------- 315 (519)
T KOG0331|consen 288 LA-------EDFLN---NPIQIN----V-----GNKK-----------------------ELKANHNIRQ---------- 315 (519)
T ss_pred HH-------HHHhc---CceEEE----e-----cchh-----------------------hhhhhcchhh----------
Confidence 63 44443 333221 1 1100 0000111110
Q ss_pred hcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhc-cCCCcEEEEEcccHhHHHHH
Q psy2371 370 SGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCY-IKEQPVLVGTTSIENSELLS 448 (816)
Q Consensus 370 ~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~-~~grpVLVft~si~~se~Ls 448 (816)
+ ....+..+|.+.+...+...+ ..+-+|||||+|+..|+.|+
T Consensus 316 ----------------i---------------------ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~ 358 (519)
T KOG0331|consen 316 ----------------I---------------------VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELA 358 (519)
T ss_pred ----------------h---------------------hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHH
Confidence 0 011223444444444444333 34457999999999999999
Q ss_pred HHHHhCCCCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHH
Q psy2371 449 NILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526 (816)
Q Consensus 449 ~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (816)
..|...|+++..|||+..+.|++.+.+.++.| .|+||||+||||+||
T Consensus 359 ~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi------------------------------- 407 (519)
T KOG0331|consen 359 RNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV------------------------------- 407 (519)
T ss_pred HHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC-------------------------------
Confidence 99999999999999997666666666656555 799999999999999
Q ss_pred HHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhh
Q psy2371 527 NEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 527 ~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l 582 (816)
|+|. ||||||+|.+.+.|+||+|||||+|..|.+..|.+..+.-
T Consensus 408 -------~dV~-----lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 408 -------PDVD-----LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred -------cccc-----EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 6787 9999999999999999999999999999999999988743
No 21
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=100.00 E-value=1.5e-47 Score=396.34 Aligned_cols=211 Identities=44% Similarity=0.705 Sum_probs=196.7
Q ss_pred cccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCC
Q psy2371 605 SIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKK 684 (816)
Q Consensus 605 ~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 684 (816)
||+|++++++|++||++||++||++||++++||+|||.||++||++|++||+++++.+.+..|++++++.+|+.++++..
T Consensus 1 pIe~~~i~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~~~~~~i~~~~~~~i~~~v~~~~~~~~ 80 (214)
T PF07516_consen 1 PIESKMISKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGEDLEEIILEMIEDVIDDIVDEYIPEKD 80 (214)
T ss_dssp SB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSCCHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccccHHHHHHHHHHhcCCCchhHHHhh-hcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHH
Q psy2371 685 SDKEWDIIGLELILKKEFKLDISFKIFFK-KKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIE 763 (816)
Q Consensus 685 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~e 763 (816)
.+++|++++|...+...|+...++..... ...+.++++++|.+.+.+.|+.|++.++++.+++++|.++|++||.+|++
T Consensus 81 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~eR~ilL~~ID~~W~~ 160 (214)
T PF07516_consen 81 SPEEWDIEGLKDFLNQNFNLDFDISPEDLINNKDKEELKKYLFEQVEESYERKEEEIGEEQFNEFERYILLKAIDQNWKD 160 (214)
T ss_dssp SSTSSCHHHHHHHHHHCSSSSSCHCSCHHSSSSTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHcCCCcchhHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHhHHHHH
Confidence 78999999999999999987654333222 22356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 764 HLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 764 hl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
||++|++||+|||||||||+||+.|||+|||++|+.|+.+|+.+++++||++
T Consensus 161 HL~~m~~Lr~~I~lR~y~QkdPl~EYk~Ea~~lF~~m~~~i~~~i~~~l~~~ 212 (214)
T PF07516_consen 161 HLDNMDQLREGIGLRSYGQKDPLVEYKREAFELFEEMLENIREDIIRNLFRS 212 (214)
T ss_dssp HHHHHHHHHHHCTCTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999974
No 22
>KOG0333|consensus
Probab=100.00 E-value=1e-47 Score=422.55 Aligned_cols=350 Identities=21% Similarity=0.230 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHH------------hcCCcEEEE
Q psy2371 62 LPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNS------------LSGQGVHIV 127 (816)
Q Consensus 62 l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~a------------L~g~~V~Vv 127 (816)
-.+.+.++.++.+ +.|+|||.+++|..++.+ |+-+.||+|||++|++|++... ..|+.+.|+
T Consensus 253 P~e~l~~I~~~~y----~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 253 PLELLSVIKKPGY----KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred CHHHHHHHHhcCC----CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 3467777765554 579999999999888766 9999999999999999997532 247889999
Q ss_pred eCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEE
Q psy2371 128 TISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVI 205 (816)
Q Consensus 128 T~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~I 205 (816)
.|||+||+|+.++-..|.+.||+++..++||.+.+++ +...+|+|++|||||| .|.|-.+ .+++..+.|+|
T Consensus 329 aptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL-id~Lenr------~lvl~qctyvv 401 (673)
T KOG0333|consen 329 APTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL-IDSLENR------YLVLNQCTYVV 401 (673)
T ss_pred chHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHH-HHHHHHH------HHHhccCceEe
Confidence 9999999999999999999999999999999998887 7778999999999998 5555433 46888999999
Q ss_pred ecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhh-hhhhhhc----ccccCCCCCeEEeCCCcEEEec
Q psy2371 206 LDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDT-KNIKKNI----KYTKKNTGDYIIDYETNQVFLT 280 (816)
Q Consensus 206 vDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~-~~~~~~~----~~~~~~~~~y~vd~~~~~v~lt 280 (816)
+||||.|+ |++ |.+++..++..+|..+-+ ++++... -........| .++++||
T Consensus 402 ldeadrmi-Dmg----------------fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~y-----rqT~mft 459 (673)
T KOG0333|consen 402 LDEADRMI-DMG----------------FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKY-----RQTVMFT 459 (673)
T ss_pred ccchhhhh-ccc----------------ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccce-----eEEEEEe
Confidence 99999998 987 566888899988752111 0000000 0001111122 5788999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhh
Q psy2371 281 ENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQ 360 (816)
Q Consensus 281 ~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q 360 (816)
+++...+++++ +++ |++.+ | |.|
T Consensus 460 atm~p~verla------r~y-lr~pv-~------------------------------------vti------------- 482 (673)
T KOG0333|consen 460 ATMPPAVERLA------RSY-LRRPV-V------------------------------------VTI------------- 482 (673)
T ss_pred cCCChHHHHHH------HHH-hhCCe-E------------------------------------EEe-------------
Confidence 99999999876 222 22111 0 111
Q ss_pred hHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcc
Q psy2371 361 NYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTS 440 (816)
Q Consensus 361 ~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~s 440 (816)
|++ ++|.-|.. +-+++.++.+|+.++++.+.+. ...|++||+|+
T Consensus 483 -------------g~~--------------------gk~~~rve-Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~ 526 (673)
T KOG0333|consen 483 -------------GSA--------------------GKPTPRVE-QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNT 526 (673)
T ss_pred -------------ccC--------------------CCCccchh-eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEec
Confidence 111 11222222 2366788899999999877654 45799999999
Q ss_pred cHhHHHHHHHHHhCCCCeEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHH
Q psy2371 441 IENSELLSNILKKNNLPHSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKK 518 (816)
Q Consensus 441 i~~se~Ls~~L~~~gi~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~ 518 (816)
++.++.||+.|.+.|+.+..|||. |.+||..+-.+..+.+.|+||||+||||+||
T Consensus 527 kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI----------------------- 583 (673)
T KOG0333|consen 527 KKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI----------------------- 583 (673)
T ss_pred hhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC-----------------------
Confidence 999999999999999999999997 6777777777766678899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 519 KNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 519 ~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|. |||||+++.|...|.||+|||||+|+.|++++|++.+|
T Consensus 584 ---------------pnVS-----lVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 584 ---------------PNVS-----LVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ---------------Cccc-----eeeecchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 6776 99999999999999999999999999999999999998
No 23
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-47 Score=438.20 Aligned_cols=330 Identities=22% Similarity=0.246 Sum_probs=258.5
Q ss_pred hhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CC---c-EEEEeCcHHH
Q psy2371 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQ---G-VHIVTISDYL 133 (816)
Q Consensus 61 ~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~---~-V~VvT~n~yL 133 (816)
+-++.+..+.+.++. .|+|||..++|.++.|+ |++++||+|||++|+||++.+... .. . ++|++|||||
T Consensus 36 l~~~ll~~l~~~gf~----~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTREL 111 (513)
T COG0513 36 LSPELLQALKDLGFE----EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTREL 111 (513)
T ss_pred CCHHHHHHHHHcCCC----CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHH
Confidence 346666666664443 79999999999999998 999999999999999999987441 22 2 8999999999
Q ss_pred HHHHHHHHHHHhhhc-CCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchh
Q psy2371 134 AKRDAEWMSVLYNWL-GLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210 (816)
Q Consensus 134 A~Rd~e~~~~l~~~l-glsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaD 210 (816)
|.|+++.+..+..++ ++++.+++||++...+ +...++||+||||||+ .|++.. +.+.+.++.++|+||||
T Consensus 112 A~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRl-lD~i~~------~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 112 AVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRL-LDLIKR------GKLDLSGVETLVLDEAD 184 (513)
T ss_pred HHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHH-HHHHHc------CCcchhhcCEEEeccHh
Confidence 999999999999999 8999999999985433 3333699999999998 444432 35778899999999999
Q ss_pred hhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHH
Q psy2371 211 SILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENI 290 (816)
Q Consensus 211 s~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~ 290 (816)
.|| |++ |.+.+..|+..++. ..++++||++....+.++
T Consensus 185 rmL-d~G----------------f~~~i~~I~~~~p~-------------------------~~qtllfSAT~~~~i~~l 222 (513)
T COG0513 185 RML-DMG----------------FIDDIEKILKALPP-------------------------DRQTLLFSATMPDDIREL 222 (513)
T ss_pred hhh-cCC----------------CHHHHHHHHHhCCc-------------------------ccEEEEEecCCCHHHHHH
Confidence 999 775 66699999999975 367888999988876665
Q ss_pred HHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCcc--ccccchhhhHHhhhcc
Q psy2371 291 LIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQ--TLASITFQNYFRMYKK 368 (816)
Q Consensus 291 l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~--tla~It~q~~f~~Y~~ 368 (816)
. ..++.. +..+.+.++.. +...|+.
T Consensus 223 ~-------~~~l~~-------------------------------------p~~i~v~~~~~~~~~~~i~q--------- 249 (513)
T COG0513 223 A-------RRYLND-------------------------------------PVEIEVSVEKLERTLKKIKQ--------- 249 (513)
T ss_pred H-------HHHccC-------------------------------------CcEEEEccccccccccCceE---------
Confidence 4 222221 11122222222 3333331
Q ss_pred hhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChH-HHHHHHHHHHHhhccCCCcEEEEEcccHhHHHH
Q psy2371 369 ISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTME-EKYQAILMDIKNCYIKEQPVLVGTTSIENSELL 447 (816)
Q Consensus 369 l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~-~K~~ai~~~i~~~~~~grpVLVft~si~~se~L 447 (816)
.+++.... +|+..+...+... ..+ .+||||+|+..++.|
T Consensus 250 --------------------------------------~~~~v~~~~~k~~~L~~ll~~~-~~~-~~IVF~~tk~~~~~l 289 (513)
T COG0513 250 --------------------------------------FYLEVESEEEKLELLLKLLKDE-DEG-RVIVFVRTKRLVEEL 289 (513)
T ss_pred --------------------------------------EEEEeCCHHHHHHHHHHHHhcC-CCC-eEEEEeCcHHHHHHH
Confidence 12333333 4888777766543 223 599999999999999
Q ss_pred HHHHHhCCCCeEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHH
Q psy2371 448 SNILKKNNLPHSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKL 525 (816)
Q Consensus 448 s~~L~~~gi~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (816)
+..|...|+++..|||+ |.+|++.+-.+.-..-.|+||||+||||+||
T Consensus 290 ~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi------------------------------ 339 (513)
T COG0513 290 AESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI------------------------------ 339 (513)
T ss_pred HHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc------------------------------
Confidence 99999999999999999 4556666666665556899999999999999
Q ss_pred HHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccc
Q psy2371 526 KNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLD 579 (816)
Q Consensus 526 ~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsle 579 (816)
|.|. ||||||+|.+.+.|.||+|||||+|..|.|+.|++.+
T Consensus 340 --------~~v~-----~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 340 --------PDVS-----HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred --------cccc-----eeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 5676 9999999999999999999999999999999999874
No 24
>KOG0340|consensus
Probab=100.00 E-value=2.1e-46 Score=397.41 Aligned_cols=377 Identities=19% Similarity=0.215 Sum_probs=280.7
Q ss_pred HHhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc----CCcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 75 RVLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS----GQGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 75 R~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~----g~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
+.||+ .|+|||.-|+|.+++|+ |+.++||+|||.+|+||++ +.|+ |.-++|+|||++||-|++|.|..+.+.
T Consensus 23 ~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil-~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~ 101 (442)
T KOG0340|consen 23 KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL-NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKL 101 (442)
T ss_pred HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH-HhhccCCCcceEEEecchHHHHHHHHHHHHHhccc
Confidence 45676 79999999999999999 9999999999999999999 5564 456899999999999999999999999
Q ss_pred cCCeEEEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecc
Q psy2371 148 LGLSIGVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISG 225 (816)
Q Consensus 148 lglsv~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg 225 (816)
++++|.+++||++ .+.....-++||+++||||+ .|.|+.|.. -...+...+.|+++||||.|| +..
T Consensus 102 l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRl-ad~l~sn~~--~~~~~~~rlkflVlDEADrvL-~~~-------- 169 (442)
T KOG0340|consen 102 LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRL-ADHLSSNLG--VCSWIFQRLKFLVLDEADRVL-AGC-------- 169 (442)
T ss_pred ccceEEEEEccHHHhhhhhhcccCCCeEecCcccc-ccccccCCc--cchhhhhceeeEEecchhhhh-ccc--------
Confidence 9999999999987 34555666899999999999 466655431 123456789999999999999 321
Q ss_pred ccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccC
Q psy2371 226 EIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKN 305 (816)
Q Consensus 226 ~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~ 305 (816)
|.+.+.-+...+|. ++++.+||++....+..+++ +.-.
T Consensus 170 --------f~d~L~~i~e~lP~-------------------------~RQtLlfSATitd~i~ql~~---------~~i~ 207 (442)
T KOG0340|consen 170 --------FPDILEGIEECLPK-------------------------PRQTLLFSATITDTIKQLFG---------CPIT 207 (442)
T ss_pred --------hhhHHhhhhccCCC-------------------------ccceEEEEeehhhHHHHhhc---------CCcc
Confidence 55466666677765 46788999988776655441 0000
Q ss_pred --cceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHH
Q psy2371 306 --KHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEF 383 (816)
Q Consensus 306 --~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~ 383 (816)
.-|.+ ++..|+.+ . +.|
T Consensus 208 k~~a~~~-----------------------------e~~~~vst------v--------------------------etL 226 (442)
T KOG0340|consen 208 KSIAFEL-----------------------------EVIDGVST------V--------------------------ETL 226 (442)
T ss_pred cccceEE-----------------------------eccCCCCc------h--------------------------hhh
Confidence 00000 11111110 0 011
Q ss_pred HHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhcc-CCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEc
Q psy2371 384 QEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYI-KEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462 (816)
Q Consensus 384 ~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~-~grpVLVft~si~~se~Ls~~L~~~gi~~~vLn 462 (816)
.+ -+++.+...|-..++..+..... ....++||+++...++.|+..|+..++.+..||
T Consensus 227 ~q---------------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lH 285 (442)
T KOG0340|consen 227 YQ---------------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLH 285 (442)
T ss_pred hh---------------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehh
Confidence 11 23455556666556655543322 256799999999999999999999999999999
Q ss_pred CCchHHHH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccC
Q psy2371 463 AKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSG 540 (816)
Q Consensus 463 ak~~~rEa--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 540 (816)
+.+.++|+ .+-.+....-+|+||||+|+||+|| |.|.
T Consensus 286 s~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI--------------------------------------P~V~--- 324 (442)
T KOG0340|consen 286 SQMPQKERLAALSRFRSNAARILIATDVASRGLDI--------------------------------------PTVE--- 324 (442)
T ss_pred hcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC--------------------------------------Ccee---
Confidence 98666654 5555555556899999999999999 6787
Q ss_pred ceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChH-HHHHHHHHcCCC-CCCcccccHHHHHHHHH
Q psy2371 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSD-QIKIVMEKLKIP-KGKSIESNLASYSIESA 618 (816)
Q Consensus 541 GLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~-~~~~~~~~~~~~-~~~~i~~~~~~~~i~~a 618 (816)
.|||++.|.+++.|+||+|||+|+|+.|.|+.|++..| +-.+.+.| ++.+.|..+... ....+.-..++.+-..|
T Consensus 325 --LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rD-v~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~akrea 401 (442)
T KOG0340|consen 325 --LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRD-VELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVAKREA 401 (442)
T ss_pred --EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhh-HHHHHHHHHHHhcccccccccchhhheehhhHHHHHHHH
Confidence 99999999999999999999999999999999999777 22222333 455555554322 12223345688888999
Q ss_pred HHHHHHhcHHHHHH
Q psy2371 619 QRKIELRNFDIRKQ 632 (816)
Q Consensus 619 Q~~~e~~~~~~rk~ 632 (816)
..+++.++|+.|++
T Consensus 402 ~m~m~~~~F~er~q 415 (442)
T KOG0340|consen 402 EMKMDNNGFGERAQ 415 (442)
T ss_pred HHHhhhcchhHHHH
Confidence 99999999998865
No 25
>KOG0338|consensus
Probab=100.00 E-value=3.3e-45 Score=401.24 Aligned_cols=324 Identities=20% Similarity=0.236 Sum_probs=253.6
Q ss_pred Hhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC------CcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 76 VLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG------QGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g------~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
+||+ .|+|+|..+||+.+-|+ +|.+.||+|||.||+||++...|.- ..|+|++||||||.|.+....++.+
T Consensus 198 ~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaq 277 (691)
T KOG0338|consen 198 TLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQ 277 (691)
T ss_pred hcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHh
Confidence 4565 89999999999988888 8999999999999999999887753 3699999999999999999999999
Q ss_pred hcCCeEEEecCCCCH--HHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceec
Q psy2371 147 WLGLSIGVNSSEISH--SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIIS 224 (816)
Q Consensus 147 ~lglsv~~i~~~~~~--~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliis 224 (816)
|..|+||+.+||.+. ++......||||++||||| .|+|++.+ ...+..+.++|+||||+|| +++
T Consensus 278 Ft~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRl-IDHlrNs~-----sf~ldsiEVLvlDEADRML-eeg------- 343 (691)
T KOG0338|consen 278 FTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRL-IDHLRNSP-----SFNLDSIEVLVLDEADRML-EEG------- 343 (691)
T ss_pred hccceeeeeecCccHHHHHHHHhhCCCEEEecchhH-HHHhccCC-----CccccceeEEEechHHHHH-HHH-------
Confidence 999999999999984 4444455899999999999 67766644 3456789999999999999 665
Q ss_pred cccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhcc
Q psy2371 225 GEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHK 304 (816)
Q Consensus 225 g~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~ 304 (816)
|.+++++|+..|++ .+++.+||+++.+++..+.. .-+.+
T Consensus 344 ---------FademnEii~lcpk-------------------------~RQTmLFSATMteeVkdL~s-------lSL~k 382 (691)
T KOG0338|consen 344 ---------FADEMNEIIRLCPK-------------------------NRQTMLFSATMTEEVKDLAS-------LSLNK 382 (691)
T ss_pred ---------HHHHHHHHHHhccc-------------------------cccceeehhhhHHHHHHHHH-------hhcCC
Confidence 77799999999986 36778889999999998761 11222
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
.+- +.||.++ .+....| |.|
T Consensus 383 Pvr--------ifvd~~~-----------------------------~~a~~Lt-QEF---------------------- 402 (691)
T KOG0338|consen 383 PVR--------IFVDPNK-----------------------------DTAPKLT-QEF---------------------- 402 (691)
T ss_pred CeE--------EEeCCcc-----------------------------ccchhhh-HHH----------------------
Confidence 221 1233222 1111111 222
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
+.|-+++.- .+-.-+...+.+.. ..-++||+.|++.+..+.-+|--.|+.+.-|||.
T Consensus 403 -------iRIR~~re~--------------dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGs 459 (691)
T KOG0338|consen 403 -------IRIRPKREG--------------DREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGS 459 (691)
T ss_pred -------heecccccc--------------ccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhccc
Confidence 223222211 11112223333222 2458999999999999999999999999999998
Q ss_pred --chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCce
Q psy2371 465 --QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGL 542 (816)
Q Consensus 465 --~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL 542 (816)
|.+|-..+-.+.-..-.|+||||+|+||+|| ++|.
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI--------------------------------------~gV~----- 496 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDI--------------------------------------EGVQ----- 496 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCc--------------------------------------ccee-----
Confidence 6667667777776677899999999999999 5676
Q ss_pred EEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 543 HIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 543 hVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
.||||++|.+...|.||+|||+|+|+.|.|++|+.-.|
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 99999999999999999999999999999999997766
No 26
>KOG0342|consensus
Probab=100.00 E-value=1.1e-43 Score=389.85 Aligned_cols=337 Identities=20% Similarity=0.235 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-------CCcEEEEeCcHHH
Q psy2371 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-------GQGVHIVTISDYL 133 (816)
Q Consensus 63 ~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-------g~~V~VvT~n~yL 133 (816)
|..+..+.++++. ..++||..+++.++.|+ +|.++||+|||+||++|++...+. |-+|+||||||||
T Consensus 91 ~~t~kAi~~~GF~----~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTREL 166 (543)
T KOG0342|consen 91 PLTLKAIKEMGFE----TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTREL 166 (543)
T ss_pred HHHHHHHHhcCcc----chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHH
Confidence 4455566666665 47999999999999999 999999999999999999976553 4579999999999
Q ss_pred HHHHHHHHHHHhhhc-CCeEEEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchh
Q psy2371 134 AKRDAEWMSVLYNWL-GLSIGVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210 (816)
Q Consensus 134 A~Rd~e~~~~l~~~l-glsv~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaD 210 (816)
|.|.+.+...+.++. +++|++++||.+ .++++...+|.|+++||||| .|++...+ ....|.++++|+||||
T Consensus 167 A~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRL-----lDHlqNt~-~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 167 AMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRL-----LDHLQNTS-GFLFRNLKCLVLDEAD 240 (543)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchH-----HhHhhcCC-cchhhccceeEeecch
Confidence 999999999999999 999999999986 44555555999999999998 45554333 3556788999999999
Q ss_pred hhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHH
Q psy2371 211 SILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENI 290 (816)
Q Consensus 211 s~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~ 290 (816)
++| |.+ |.+.+.+|++.|++ .+++.+||++...+++++
T Consensus 241 rlL-d~G----------------F~~di~~Ii~~lpk-------------------------~rqt~LFSAT~~~kV~~l 278 (543)
T KOG0342|consen 241 RLL-DIG----------------FEEDVEQIIKILPK-------------------------QRQTLLFSATQPSKVKDL 278 (543)
T ss_pred hhh-hcc----------------cHHHHHHHHHhccc-------------------------cceeeEeeCCCcHHHHHH
Confidence 999 876 77799999999986 478889999999999998
Q ss_pred HHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchh
Q psy2371 291 LIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKIS 370 (816)
Q Consensus 291 l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~ 370 (816)
. +-.++++.-||=.+ |...+.. -++++ |
T Consensus 279 ~-------~~~L~~d~~~v~~~------d~~~~~T----------------he~l~-------------Q---------- 306 (543)
T KOG0342|consen 279 A-------RGALKRDPVFVNVD------DGGERET----------------HERLE-------------Q---------- 306 (543)
T ss_pred H-------HHhhcCCceEeecC------CCCCcch----------------hhccc-------------c----------
Confidence 6 23345555554221 1111000 01110 1
Q ss_pred cccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHH
Q psy2371 371 GMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNI 450 (816)
Q Consensus 371 GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~ 450 (816)
-++..+...++..+...+++.. ..-.|+|||+|+..+..++++
T Consensus 307 ------------------------------------gyvv~~~~~~f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~l 349 (543)
T KOG0342|consen 307 ------------------------------------GYVVAPSDSRFSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAEL 349 (543)
T ss_pred ------------------------------------eEEeccccchHHHHHHHHHHhc-CCceEEEEechhhHHHHHHHH
Confidence 1222233445667777776654 336899999999999999999
Q ss_pred HHhCCCCeEEEcCCchH--HHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHH
Q psy2371 451 LKKNNLPHSVLNAKQHK--LEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNE 528 (816)
Q Consensus 451 L~~~gi~~~vLnak~~~--rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (816)
|+...+|+--+||++.+ |-...-.+.-...-|++|||+|+||+||
T Consensus 350 L~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~--------------------------------- 396 (543)
T KOG0342|consen 350 LNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI--------------------------------- 396 (543)
T ss_pred HhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC---------------------------------
Confidence 99999999999999554 4444444444455799999999999999
Q ss_pred HHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhh
Q psy2371 529 WMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 529 ~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~ 583 (816)
|.|. +||+++.|.+++.|+||+|||||.|..|.+.+++.+++.-+
T Consensus 397 -----P~V~-----~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~F 441 (543)
T KOG0342|consen 397 -----PDVD-----WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGF 441 (543)
T ss_pred -----CCce-----EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHH
Confidence 7787 99999999999999999999999999999999998877543
No 27
>KOG0336|consensus
Probab=100.00 E-value=4.3e-44 Score=383.90 Aligned_cols=388 Identities=22% Similarity=0.274 Sum_probs=283.7
Q ss_pred HHHHHHHhhHHHHhcCChHHHHHHHHHHH----HhcccCCCcc-----hhhHHHHHHHHHHHHHH--hcc-ccchhhhhh
Q psy2371 21 KIVQKINELESVMQKLSDEELQNQTSKLK----QSIHSGETLD-----SILPKAFSVCREASKRV--LKM-RHFDVQLIG 88 (816)
Q Consensus 21 ~~~~~i~~~~~~~~~lsd~~l~~~~~~~~----~~~~~g~~ld-----~~l~ea~a~vrea~~R~--lg~-~p~~VQ~~~ 88 (816)
++.+..-...++-+.||.+|++..-.+=- ..+++|++-- --...||+.+-|..... .|+ +|+|+|.++
T Consensus 171 Pi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQa 250 (629)
T KOG0336|consen 171 PIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQA 250 (629)
T ss_pred chhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcc
Confidence 45555555566788899988765432210 0234455421 01235777776655543 344 899999999
Q ss_pred hccccCCc--eeeecCCCCchHHHHHHHHHHHhc---------CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 89 GIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---------GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 89 ~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---------g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
+|++++|. |+-++||+||||+|+||.+.+.+. |.+|+|+|||++||.|+--++ ..|.+-|+...|++|
T Consensus 251 WPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~-~kysyng~ksvc~yg 329 (629)
T KOG0336|consen 251 WPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEV-KKYSYNGLKSVCVYG 329 (629)
T ss_pred cceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHH-hHhhhcCcceEEEec
Confidence 99999999 999999999999999999987542 568999999999999986544 689999999999999
Q ss_pred CCCHHHHH--hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhH
Q psy2371 158 EISHSLKK--KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFY 235 (816)
Q Consensus 158 ~~~~~~r~--~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~ 235 (816)
|-+..++. ..-+.+|+++|||+| .|+..+| ...++.+.|+|+||||+|| |++ |+
T Consensus 330 ggnR~eqie~lkrgveiiiatPgrl-ndL~~~n------~i~l~siTYlVlDEADrML-DMg----------------FE 385 (629)
T KOG0336|consen 330 GGNRNEQIEDLKRGVEIIIATPGRL-NDLQMDN------VINLASITYLVLDEADRML-DMG----------------FE 385 (629)
T ss_pred CCCchhHHHHHhcCceEEeeCCchH-hhhhhcC------eeeeeeeEEEEecchhhhh-ccc----------------cc
Confidence 88754443 334789999999999 5665555 3567899999999999999 887 66
Q ss_pred HHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeE
Q psy2371 236 KIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKI 315 (816)
Q Consensus 236 ~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v 315 (816)
++|.+|+-.+.+ .+++++-|+
T Consensus 386 pqIrkilldiRP-------------------------DRqtvmTSA---------------------------------- 406 (629)
T KOG0336|consen 386 PQIRKILLDIRP-------------------------DRQTVMTSA---------------------------------- 406 (629)
T ss_pred HHHHHHhhhcCC-------------------------cceeeeecc----------------------------------
Confidence 688877665543 233333333
Q ss_pred EEeecccccccccccchhhhhHHHh--ccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEE
Q psy2371 316 IIVDEFTGRLMKTRRWAEGLHQALE--AKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETIT 393 (816)
Q Consensus 316 ~ivD~~tGr~~~grr~s~GLhQaie--aKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~ 393 (816)
+|.+|+|+.-. .||.+-+- -|+ |+.+.
T Consensus 407 --------------TWP~~VrrLa~sY~Kep~~v~------------------------vGs-------------LdL~a 435 (629)
T KOG0336|consen 407 --------------TWPEGVRRLAQSYLKEPMIVY------------------------VGS-------------LDLVA 435 (629)
T ss_pred --------------cCchHHHHHHHHhhhCceEEE------------------------ecc-------------cceee
Confidence 35555555421 12222111 111 12222
Q ss_pred cCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC--chHHHHH
Q psy2371 394 VPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK--QHKLEAQ 471 (816)
Q Consensus 394 IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak--~~~rEa~ 471 (816)
+-+-+ +.++..++.+|++ +++.+.+.+...-.|+|||.++..++.||.-|.-.||..+.|||. |..||.+
T Consensus 436 ~~sVk-------Q~i~v~~d~~k~~-~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 436 VKSVK-------QNIIVTTDSEKLE-IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMA 507 (629)
T ss_pred eeeee-------eeEEecccHHHHH-HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHH
Confidence 22211 1234556788885 555555666677789999999999999999999999999999997 6778887
Q ss_pred HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCC
Q psy2371 472 IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHE 551 (816)
Q Consensus 472 ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pe 551 (816)
+-.+..+.-+|+||||+|+||+|+ ++|. ||+|||+|.
T Consensus 508 l~~~ksG~vrILvaTDlaSRGlDv--------------------------------------~DiT-----HV~NyDFP~ 544 (629)
T KOG0336|consen 508 LEDFKSGEVRILVATDLASRGLDV--------------------------------------PDIT-----HVYNYDFPR 544 (629)
T ss_pred HHhhhcCceEEEEEechhhcCCCc--------------------------------------hhcc-----eeeccCCCc
Confidence 777665566899999999999999 5665 999999999
Q ss_pred CcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHc
Q psy2371 552 SRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKL 598 (816)
Q Consensus 552 s~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~ 598 (816)
+.+.|.||+|||||+|+.|+|..|++-+|--|. . .+..++++.
T Consensus 545 nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a---~-eLI~ILe~a 587 (629)
T KOG0336|consen 545 NIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMA---E-ELIQILERA 587 (629)
T ss_pred cHHHHHHHhcccccCCCCcceEEEEehhhHHHH---H-HHHHHHHHh
Confidence 999999999999999999999999999996542 2 344455553
No 28
>KOG0345|consensus
Probab=100.00 E-value=2.2e-43 Score=384.98 Aligned_cols=333 Identities=18% Similarity=0.207 Sum_probs=262.9
Q ss_pred hhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc------C--CcEEEEeCc
Q psy2371 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS------G--QGVHIVTIS 130 (816)
Q Consensus 61 ~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~------g--~~V~VvT~n 130 (816)
+.|....++.+-++. ..||||..+||.|+.++ ++++.||+||||||++|++..... + -+++|++||
T Consensus 13 L~~~l~~~l~~~GF~----~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFE----KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCc----ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCc
Confidence 556666666555554 57999999999999888 999999999999999999964422 2 268999999
Q ss_pred HHHHHHHHHHHHHHhhh-cCCeEEEecCCCCHHHH---HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEe
Q psy2371 131 DYLAKRDAEWMSVLYNW-LGLSIGVNSSEISHSLK---KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVIL 206 (816)
Q Consensus 131 ~yLA~Rd~e~~~~l~~~-lglsv~~i~~~~~~~~r---~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~Iv 206 (816)
||||.|+.+...+|... ..+++-+++||.+.++- -+.-+|.|++|||||| +|.+...+ ..+..|.+.++|+
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~~~~----~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQREA----EKLSFRSLEILVL 163 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHhchh----hhccccccceEEe
Confidence 99999999999999987 69999999999886542 3334899999999998 66665433 3455789999999
Q ss_pred cchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHH
Q psy2371 207 DEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEK 286 (816)
Q Consensus 207 DEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~ 286 (816)
||||++| |++ |...++.|+..||+| +|+-+||++....
T Consensus 164 DEADrLl-dmg----------------Fe~~~n~ILs~LPKQ-------------------------RRTGLFSATq~~~ 201 (567)
T KOG0345|consen 164 DEADRLL-DMG----------------FEASVNTILSFLPKQ-------------------------RRTGLFSATQTQE 201 (567)
T ss_pred cchHhHh-ccc----------------HHHHHHHHHHhcccc-------------------------cccccccchhhHH
Confidence 9999988 886 777999999999984 7889999999988
Q ss_pred HHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCcc--ccccchhhhHHh
Q psy2371 287 YENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQ--TLASITFQNYFR 364 (816)
Q Consensus 287 ~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~--tla~It~q~~f~ 364 (816)
++++. ...+++ + -.|.+..++. |.++. ++
T Consensus 202 v~dL~-------raGLRN---------------------------------p----v~V~V~~k~~~~tPS~L--~~--- 232 (567)
T KOG0345|consen 202 VEDLA-------RAGLRN---------------------------------P----VRVSVKEKSKSATPSSL--AL--- 232 (567)
T ss_pred HHHHH-------HhhccC---------------------------------c----eeeeecccccccCchhh--cc---
Confidence 88865 112221 1 1122332222 11111 11
Q ss_pred hhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhH
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENS 444 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~s 444 (816)
.++.....+|+..+++.+... ....+|||+.|+..+
T Consensus 233 ------------------------------------------~Y~v~~a~eK~~~lv~~L~~~--~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 233 ------------------------------------------EYLVCEADEKLSQLVHLLNNN--KDKKCIVFFPTCASV 268 (567)
T ss_pred ------------------------------------------eeeEecHHHHHHHHHHHHhcc--ccccEEEEecCcchH
Confidence 123345678999999988653 345799999999999
Q ss_pred HHHHHHHHhC--CCCeEEEcCCc--hHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHH
Q psy2371 445 ELLSNILKKN--NLPHSVLNAKQ--HKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKN 520 (816)
Q Consensus 445 e~Ls~~L~~~--gi~~~vLnak~--~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~ 520 (816)
++.+..|... +++.-.+||++ .+|...+-++.-.+..|++|||+|+||+||
T Consensus 269 eYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi------------------------- 323 (567)
T KOG0345|consen 269 EYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI------------------------- 323 (567)
T ss_pred HHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC-------------------------
Confidence 9999998865 67888999994 456666666665577899999999999999
Q ss_pred HHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 521 KIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 521 ~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|+|. +||++|.|.++..+.||.|||||+|+.|.|+.||...+
T Consensus 324 -------------p~iD-----~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E 365 (567)
T KOG0345|consen 324 -------------PGID-----LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPRE 365 (567)
T ss_pred -------------CCce-----EEEecCCCCChhHHHhhcchhhhccCccceEEEecccH
Confidence 6776 99999999999999999999999999999999997754
No 29
>KOG0343|consensus
Probab=100.00 E-value=5.8e-42 Score=378.45 Aligned_cols=331 Identities=20% Similarity=0.236 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-------cCCcEEEEeCcHHHH
Q psy2371 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-------SGQGVHIVTISDYLA 134 (816)
Q Consensus 64 ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-------~g~~V~VvT~n~yLA 134 (816)
....-++|+.+. .|++||..+||..++|+ |+-++||+||||||++|++.+.. .|-|++|++||||||
T Consensus 79 ~t~kgLke~~fv----~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA 154 (758)
T KOG0343|consen 79 KTLKGLKEAKFV----KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELA 154 (758)
T ss_pred HHHHhHhhcCCc----cHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHH
Confidence 445567788776 58999999999999999 99999999999999999996532 367999999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEecCCCCH-HHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 135 KRDAEWMSVLYNWLGLSIGVNSSEISH-SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 135 ~Rd~e~~~~l~~~lglsv~~i~~~~~~-~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.|.++.+..+.++.++|+|+|+||.+. .++....+++|++|||||| ..+|... ..+....+.++|+||||+||
T Consensus 155 ~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRL-----LQHmde~-~~f~t~~lQmLvLDEADR~L 228 (758)
T KOG0343|consen 155 LQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRL-----LQHMDEN-PNFSTSNLQMLVLDEADRML 228 (758)
T ss_pred HHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHH-----HHHhhhc-CCCCCCcceEEEeccHHHHH
Confidence 999999999999999999999999884 3555567899999999998 4445322 23455789999999999999
Q ss_pred hhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHH
Q psy2371 214 IDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK 293 (816)
Q Consensus 214 iDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~ 293 (816)
|++ |...++.|+..||+ ++++++||++-...+..+.+
T Consensus 229 -DMG----------------Fk~tL~~Ii~~lP~-------------------------~RQTLLFSATqt~svkdLaR- 265 (758)
T KOG0343|consen 229 -DMG----------------FKKTLNAIIENLPK-------------------------KRQTLLFSATQTKSVKDLAR- 265 (758)
T ss_pred -HHh----------------HHHHHHHHHHhCCh-------------------------hheeeeeecccchhHHHHHH-
Confidence 887 77799999999997 57888999998888887751
Q ss_pred HHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhccc
Q psy2371 294 MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMT 373 (816)
Q Consensus 294 ~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmT 373 (816)
+--+|..||-. | ++.+.+
T Consensus 266 -------LsL~dP~~vsv------------------------h-------------e~a~~a------------------ 283 (758)
T KOG0343|consen 266 -------LSLKDPVYVSV------------------------H-------------ENAVAA------------------ 283 (758)
T ss_pred -------hhcCCCcEEEE------------------------e-------------cccccc------------------
Confidence 22345555421 1 111111
Q ss_pred ccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh
Q psy2371 374 GTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK 453 (816)
Q Consensus 374 GTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~ 453 (816)
|. +.|.+.| +.+...+|.+.+-..|.... ....|||+.|+.++..++..+.+
T Consensus 284 -tP----~~L~Q~y---------------------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~r 335 (758)
T KOG0343|consen 284 -TP----SNLQQSY---------------------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCR 335 (758)
T ss_pred -Ch----hhhhheE---------------------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHh
Confidence 11 1123322 33445789998888887653 35689999999999999999986
Q ss_pred C--CCCeEEEcCCchHHHH-HHHH-HcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHH
Q psy2371 454 N--NLPHSVLNAKQHKLEA-QIIA-QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEW 529 (816)
Q Consensus 454 ~--gi~~~vLnak~~~rEa-~ii~-~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (816)
. |+|.-.|||++++.-+ ++.. +--.+..|++|||+|+||+|+
T Consensus 336 lrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF---------------------------------- 381 (758)
T KOG0343|consen 336 LRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF---------------------------------- 381 (758)
T ss_pred cCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC----------------------------------
Confidence 5 9999999999776554 3332 333356899999999999999
Q ss_pred HhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 530 MLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 530 ~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|. +||++|.|++...|+||+|||+|.+..|.|..+|++.+
T Consensus 382 ----paVd-----wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 382 ----PAVD-----WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred ----cccc-----eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 6787 99999999999999999999999999999999999876
No 30
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-41 Score=394.97 Aligned_cols=366 Identities=20% Similarity=0.255 Sum_probs=263.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccCCC-------cchh-hHHHHHHHHHHHHHHhcc-ccchhhhhhhccccCCc--eee
Q psy2371 31 SVMQKLSDEELQNQTSKLKQSIHSGET-------LDSI-LPKAFSVCREASKRVLKM-RHFDVQLIGGIALHYGN--ISE 99 (816)
Q Consensus 31 ~~~~~lsd~~l~~~~~~~~~~~~~g~~-------ld~~-l~ea~a~vrea~~R~lg~-~p~~VQ~~~~~~L~~G~--Iae 99 (816)
++...+++++..+.-.+..-.+..|.. +.++ +|+ -+.++.. ..|+ .|+|+|..++|++++|+ |+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~---~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ 173 (545)
T PTZ00110 98 PEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPD---YILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGI 173 (545)
T ss_pred hhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCH---HHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 466778888875433322222223432 2221 232 2233333 3566 69999999999999998 999
Q ss_pred ecCCCCchHHHHHHHHHHHhc--------CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH--HHhhcC
Q psy2371 100 MQTGEGKTLVATLAAYLNSLS--------GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL--KKKSYE 169 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~--------g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~--r~~~y~ 169 (816)
++||+|||++|+||++.+.+. |..|+|++||++||.|..+++..+...+++++.++++|.+... +....+
T Consensus 174 ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~ 253 (545)
T PTZ00110 174 AETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRG 253 (545)
T ss_pred eCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcC
Confidence 999999999999999976553 4459999999999999999999999999999999999987433 334457
Q ss_pred CCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchh
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEI 249 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~ 249 (816)
++|+++||++| .|+|... ...++.+.++||||||.|| |.+ |.+.+.+++..+++
T Consensus 254 ~~IlVaTPgrL-~d~l~~~------~~~l~~v~~lViDEAd~ml-d~g----------------f~~~i~~il~~~~~-- 307 (545)
T PTZ00110 254 VEILIACPGRL-IDFLESN------VTNLRRVTYLVLDEADRML-DMG----------------FEPQIRKIVSQIRP-- 307 (545)
T ss_pred CCEEEECHHHH-HHHHHcC------CCChhhCcEEEeehHHhhh-hcc----------------hHHHHHHHHHhCCC--
Confidence 99999999998 5665432 3456789999999999998 553 55577778777754
Q ss_pred hhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccc
Q psy2371 250 DTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTR 329 (816)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~gr 329 (816)
..+.++||++....++.+. ..++..+. +.+. .|.+
T Consensus 308 -----------------------~~q~l~~SAT~p~~v~~l~-------~~l~~~~~--------v~i~---vg~~---- 342 (545)
T PTZ00110 308 -----------------------DRQTLMWSATWPKEVQSLA-------RDLCKEEP--------VHVN---VGSL---- 342 (545)
T ss_pred -----------------------CCeEEEEEeCCCHHHHHHH-------HHHhccCC--------EEEE---ECCC----
Confidence 3567888998776666553 22332110 1000 0000
Q ss_pred cchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeE
Q psy2371 330 RWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKI 409 (816)
Q Consensus 330 r~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v 409 (816)
.. .....|. +.+.
T Consensus 343 ----------------~l----~~~~~i~-----------------------------------------------q~~~ 355 (545)
T PTZ00110 343 ----------------DL----TACHNIK-----------------------------------------------QEVF 355 (545)
T ss_pred ----------------cc----ccCCCee-----------------------------------------------EEEE
Confidence 00 0000000 0122
Q ss_pred ecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCC--CccEEEecC
Q psy2371 410 YKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATN 487 (816)
Q Consensus 410 ~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATn 487 (816)
+....+|...+...+......+.++||||+|++.++.|+..|...|+++..+||+..+.|++-+...++ ...|+||||
T Consensus 356 ~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd 435 (545)
T PTZ00110 356 VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD 435 (545)
T ss_pred EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc
Confidence 233455666666666555446778999999999999999999999999999999865555543434343 457999999
Q ss_pred ccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC
Q psy2371 488 MAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG 567 (816)
Q Consensus 488 mAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG 567 (816)
+|+||+|| |+|. |||+++.|.+...|.||+|||||.|
T Consensus 436 v~~rGIDi--------------------------------------~~v~-----~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 436 VASRGLDV--------------------------------------KDVK-----YVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred hhhcCCCc--------------------------------------ccCC-----EEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999 5676 9999999999999999999999999
Q ss_pred CCceEEEEeccchh
Q psy2371 568 DPGSSRFYLSLDDS 581 (816)
Q Consensus 568 dpG~s~~~lsleD~ 581 (816)
.+|.+.+|++.+|.
T Consensus 473 ~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 473 AKGASYTFLTPDKY 486 (545)
T ss_pred CCceEEEEECcchH
Confidence 99999999998774
No 31
>KOG0328|consensus
Probab=100.00 E-value=2.4e-42 Score=357.07 Aligned_cols=329 Identities=18% Similarity=0.234 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC---CcEEEEeCcHHHHHHH
Q psy2371 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG---QGVHIVTISDYLAKRD 137 (816)
Q Consensus 63 ~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g---~~V~VvT~n~yLA~Rd 137 (816)
.+.+.-+..-++. +|..+|..|++.+++|+ |||++.|+|||.+|++.++.+.-.+ .+|+|++||||||.|.
T Consensus 36 edlLrgiY~yGfe----kPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi 111 (400)
T KOG0328|consen 36 EDLLRGIYAYGFE----KPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQI 111 (400)
T ss_pred HHHHHHHHHhccC----CchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHH
Confidence 3444444444443 69999999999999999 9999999999999999888654333 4799999999999999
Q ss_pred HHHHHHHhhhcCCeEEEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhh
Q psy2371 138 AEWMSVLYNWLGLSIGVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILID 215 (816)
Q Consensus 138 ~e~~~~l~~~lglsv~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiD 215 (816)
.+.+..+..++|+.+...+||.+ .+.|+..|++++|.||||++ +|.++-. .+.-|.+..+|+||||.|| +
T Consensus 112 ~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv-~dmikr~------~L~tr~vkmlVLDEaDemL-~ 183 (400)
T KOG0328|consen 112 QKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRV-LDMIKRR------SLRTRAVKMLVLDEADEML-N 183 (400)
T ss_pred HHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchH-HHHHHhc------cccccceeEEEeccHHHHH-H
Confidence 99999999999999999999877 55688889999999999998 7776543 4566899999999999999 4
Q ss_pred ccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHH
Q psy2371 216 EARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMA 295 (816)
Q Consensus 216 ea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~A 295 (816)
.+ |.+++..+.+.||+ ..+-+++|++-.+.+.+..
T Consensus 184 kg----------------fk~Qiydiyr~lp~-------------------------~~Qvv~~SATlp~eilemt---- 218 (400)
T KOG0328|consen 184 KG----------------FKEQIYDIYRYLPP-------------------------GAQVVLVSATLPHEILEMT---- 218 (400)
T ss_pred hh----------------HHHHHHHHHHhCCC-------------------------CceEEEEeccCcHHHHHHH----
Confidence 43 66688889999986 3556677888776665443
Q ss_pred HHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhccccc
Q psy2371 296 LRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGT 375 (816)
Q Consensus 296 l~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGT 375 (816)
..++...+.-.|+.+ ..|+..|.
T Consensus 219 ---~kfmtdpvrilvkrd-------------------------------------eltlEgIK----------------- 241 (400)
T KOG0328|consen 219 ---EKFMTDPVRILVKRD-------------------------------------ELTLEGIK----------------- 241 (400)
T ss_pred ---HHhcCCceeEEEecC-------------------------------------CCchhhhh-----------------
Confidence 123322222222221 12222221
Q ss_pred ccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecC-hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC
Q psy2371 376 AETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKT-MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN 454 (816)
Q Consensus 376 a~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t-~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~ 454 (816)
+. +|-.. ++.|+.++++.-... .-.| .+|||+|+.++++|++.+...
T Consensus 242 ---------qf---------------------~v~ve~EewKfdtLcdLYd~L-tItQ-avIFcnTk~kVdwLtekm~~~ 289 (400)
T KOG0328|consen 242 ---------QF---------------------FVAVEKEEWKFDTLCDLYDTL-TITQ-AVIFCNTKRKVDWLTEKMREA 289 (400)
T ss_pred ---------hh---------------------eeeechhhhhHhHHHHHhhhh-ehhe-EEEEecccchhhHHHHHHHhh
Confidence 10 12223 344899998876544 2334 789999999999999999999
Q ss_pred CCCeEEEcCCchHHHHHHHH--HcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhh
Q psy2371 455 NLPHSVLNAKQHKLEAQIIA--QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532 (816)
Q Consensus 455 gi~~~vLnak~~~rEa~ii~--~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (816)
++.+..+||+..+.|++-+. +.....+|+|+||+-+||+|+
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv------------------------------------- 332 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV------------------------------------- 332 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc-------------------------------------
Confidence 99999999996655554444 444456899999999999999
Q ss_pred hhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 533 ~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|. +|||||+|.++..|+||+||+||.|+.|.++-|+.-+|
T Consensus 333 -~qVs-----lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d 374 (400)
T KOG0328|consen 333 -QQVS-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 374 (400)
T ss_pred -ceeE-----EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHH
Confidence 6787 99999999999999999999999999999999997776
No 32
>KOG0347|consensus
Probab=100.00 E-value=8.1e-43 Score=385.28 Aligned_cols=369 Identities=20% Similarity=0.226 Sum_probs=255.3
Q ss_pred ccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHH---------HHhc-----CCc--EEEEeCcHHHHHHHHHH
Q psy2371 80 RHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYL---------NSLS-----GQG--VHIVTISDYLAKRDAEW 140 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l---------~aL~-----g~~--V~VvT~n~yLA~Rd~e~ 140 (816)
+|++||...+|+...|+ ++-+.||+||||||.+|++. +.+. +.. .+|+|||||||.|+.+.
T Consensus 203 ~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~H 282 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQH 282 (731)
T ss_pred CCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHH
Confidence 89999999999999996 89999999999999999997 2232 334 89999999999999999
Q ss_pred HHHHhhhcCCeEEEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 141 MSVLYNWLGLSIGVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 141 ~~~l~~~lglsv~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
+..+..+.|++|..++||+. .++|...|.+|||++|||||.-=|=.+|. .-...+.++++||||+|+|+-+.-
T Consensus 283 l~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~----~l~~~k~vkcLVlDEaDRmvekgh- 357 (731)
T KOG0347|consen 283 LKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT----HLGNFKKVKCLVLDEADRMVEKGH- 357 (731)
T ss_pred HHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh----hhhhhhhceEEEEccHHHHhhhcc-
Confidence 99999999999999999998 46788889999999999999432222332 123457899999999999994432
Q ss_pred CcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHH
Q psy2371 219 TPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRA 298 (816)
Q Consensus 219 tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A 298 (816)
|. .+..+++.|... ....++++..||++-..-...= +
T Consensus 358 ---------------F~-Els~lL~~L~e~--------------------~~~~qrQTlVFSATlt~~~~~~-------~ 394 (731)
T KOG0347|consen 358 ---------------FE-ELSKLLKHLNEE--------------------QKNRQRQTLVFSATLTLVLQQP-------L 394 (731)
T ss_pred ---------------HH-HHHHHHHHhhhh--------------------hcccccceEEEEEEeehhhcCh-------h
Confidence 66 888888887521 0122467777877643211100 0
Q ss_pred HHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhc----------cccceeccCccccccchhhhHHhhhcc
Q psy2371 299 HVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEA----------KENLEIQNETQTLASITFQNYFRMYKK 368 (816)
Q Consensus 299 ~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaiea----------Ke~v~i~~e~~tla~It~q~~f~~Y~~ 368 (816)
+...++ .+++ +-+.|-|+. +.-+.+++++
T Consensus 395 ~~~~k~----------------------~~k~--~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~----------------- 433 (731)
T KOG0347|consen 395 SSSRKK----------------------KDKE--DELNAKIQHLMKKIGFRGKPKIIDLTPQS----------------- 433 (731)
T ss_pred HHhhhc----------------------cchh--hhhhHHHHHHHHHhCccCCCeeEecCcch-----------------
Confidence 000000 0000 011111110 1112223322
Q ss_pred hhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHH
Q psy2371 369 ISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLS 448 (816)
Q Consensus 369 l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls 448 (816)
+||.+-.+.+ +.+|+ .-+|..-+.|.+ .+ .|+ .||||||++.+..|+
T Consensus 434 -----~ta~~l~Es~--------I~C~~----~eKD~ylyYfl~--------------ry-PGr-TlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 434 -----ATASTLTESL--------IECPP----LEKDLYLYYFLT--------------RY-PGR-TLVFCNSIDCVKRLT 480 (731)
T ss_pred -----hHHHHHHHHh--------hcCCc----cccceeEEEEEe--------------ec-CCc-eEEEechHHHHHHHH
Confidence 3333321111 22233 122222222222 33 576 799999999999999
Q ss_pred HHHHhCCCCeEEEcCCc--hHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHH
Q psy2371 449 NILKKNNLPHSVLNAKQ--HKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526 (816)
Q Consensus 449 ~~L~~~gi~~~vLnak~--~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (816)
-+|+..+|+.-.|||.+ .+|-..+-.|+-.+..|+||||+|+||+||
T Consensus 481 ~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDI------------------------------- 529 (731)
T KOG0347|consen 481 VLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDI------------------------------- 529 (731)
T ss_pred HHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCC-------------------------------
Confidence 99999999999999995 456667777888889999999999999999
Q ss_pred HHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcc
Q psy2371 527 NEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSI 606 (816)
Q Consensus 527 ~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i 606 (816)
|+|. |||+|..|.+..+|+||.|||||++..|.|.+++++.+- . .+.++...+.-.++-||
T Consensus 530 -------p~V~-----HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~--~-----~~~KL~ktL~k~~dlpi 590 (731)
T KOG0347|consen 530 -------PGVQ-----HVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV--G-----PLKKLCKTLKKKEDLPI 590 (731)
T ss_pred -------CCcc-----eEEEeecCCccceeEecccccccccCCCeEEEEeChHHh--H-----HHHHHHHHHhhccCCCc
Confidence 6776 999999999999999999999999999999999999882 1 23445555543344444
Q ss_pred cccHHHHHHHHHHHH
Q psy2371 607 ESNLASYSIESAQRK 621 (816)
Q Consensus 607 ~~~~~~~~i~~aQ~~ 621 (816)
-|..+..+.....+
T Consensus 591 -fPv~~~~m~~lkeR 604 (731)
T KOG0347|consen 591 -FPVETDIMDALKER 604 (731)
T ss_pred -eeccHHHHHHHHHH
Confidence 23334444433333
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-41 Score=379.75 Aligned_cols=322 Identities=20% Similarity=0.201 Sum_probs=241.7
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc----------CCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS----------GQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~----------g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.|+ .|+|+|..+++.+++|+ |++|+||+|||++|++|++...+. +..++|++||++||.|.++++..
T Consensus 26 ~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 26 KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 455 89999999999999998 999999999999999999865542 34699999999999999999999
Q ss_pred HhhhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 144 LYNWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 144 l~~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
+.+.+|+++++++||.+.+.. ....++||++|||+++ .++++.. ...+..+.++||||||.|+ |.+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~~v~~lViDEad~l~-~~~---- 173 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL-IDYAKQN------HINLGAIQVVVLDEADRMF-DLG---- 173 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CcccccccEEEEecHHHHh-hcc----
Confidence 999999999999998874433 3334689999999998 5665432 3456789999999999998 543
Q ss_pred eeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHH
Q psy2371 222 IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVL 301 (816)
Q Consensus 222 iisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l 301 (816)
|...+..+...++.. .....+++|++....+..+. ...
T Consensus 174 ------------f~~~i~~i~~~~~~~-----------------------~~~~~~l~SAT~~~~~~~~~-------~~~ 211 (423)
T PRK04837 174 ------------FIKDIRWLFRRMPPA-----------------------NQRLNMLFSATLSYRVRELA-------FEH 211 (423)
T ss_pred ------------cHHHHHHHHHhCCCc-----------------------cceeEEEEeccCCHHHHHHH-------HHH
Confidence 333677777776530 02345778888766655543 111
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
+. +..++. +.+...+...|
T Consensus 212 ~~-~p~~i~------------------------------------v~~~~~~~~~i------------------------ 230 (423)
T PRK04837 212 MN-NPEYVE------------------------------------VEPEQKTGHRI------------------------ 230 (423)
T ss_pred CC-CCEEEE------------------------------------EcCCCcCCCce------------------------
Confidence 11 111111 11000000000
Q ss_pred HHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEE
Q psy2371 382 EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVL 461 (816)
Q Consensus 382 e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vL 461 (816)
....++.+..+|...+...+... ....+||||+|+..++.++..|...|+++..+
T Consensus 231 -----------------------~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~l 285 (423)
T PRK04837 231 -----------------------KEELFYPSNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLL 285 (423)
T ss_pred -----------------------eEEEEeCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEe
Confidence 01133455667877777766442 34679999999999999999999999999999
Q ss_pred cCCchHHHH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 462 NAKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 462 nak~~~rEa--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
||+..+.++ .+-.+..+...|+||||+|+||+|| |+|.
T Consensus 286 hg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi--------------------------------------p~v~-- 325 (423)
T PRK04837 286 TGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI--------------------------------------PAVT-- 325 (423)
T ss_pred cCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc--------------------------------------cccC--
Confidence 998654444 4444444455899999999999999 6776
Q ss_pred CceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 540 GGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|||+++.|.|...|.||+|||||.|.+|.+++|++.+|.
T Consensus 326 ---~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 326 ---HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ---EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 999999999999999999999999999999999988764
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.6e-40 Score=389.72 Aligned_cols=320 Identities=19% Similarity=0.199 Sum_probs=242.8
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhc-C
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWL-G 149 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-g 149 (816)
+|+ .|+|+|..+++.+++|+ |++++||+|||++|++|++.... .+..|+|++||++||.|.++.+..+...+ |
T Consensus 24 ~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 465 69999999999999998 99999999999999999986433 24479999999999999999999998876 8
Q ss_pred CeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 150 LSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 150 lsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
+++..++||.+.+.+ ...-+++|+||||++| +|+|.. ..+.+..+.++||||||.|| +.+
T Consensus 104 i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl-~d~l~r------~~l~l~~l~~lVlDEAd~ml-~~g---------- 165 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRL-LDHLKR------GTLDLSKLSGLVLDEADEML-RMG---------- 165 (629)
T ss_pred ceEEEEECCcCHHHHHHHhcCCCCEEEECHHHH-HHHHHc------CCcchhhceEEEeccHHHHh-hcc----------
Confidence 999999999875543 3334689999999998 565542 23456789999999999998 543
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcc
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKH 307 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~d 307 (816)
|...+..++..++. ..+.++||++....+..+. ..++. +..
T Consensus 166 ------f~~di~~Il~~lp~-------------------------~~q~llfSAT~p~~i~~i~-------~~~l~-~~~ 206 (629)
T PRK11634 166 ------FIEDVETIMAQIPE-------------------------GHQTALFSATMPEAIRRIT-------RRFMK-EPQ 206 (629)
T ss_pred ------cHHHHHHHHHhCCC-------------------------CCeEEEEEccCChhHHHHH-------HHHcC-CCe
Confidence 33477778777764 3567889998877666543 12221 110
Q ss_pred eEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHh
Q psy2371 308 YIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIY 387 (816)
Q Consensus 308 YiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y 387 (816)
. +.+.....+...|.
T Consensus 207 ~------------------------------------i~i~~~~~~~~~i~----------------------------- 221 (629)
T PRK11634 207 E------------------------------------VRIQSSVTTRPDIS----------------------------- 221 (629)
T ss_pred E------------------------------------EEccCccccCCceE-----------------------------
Confidence 0 11111111111111
Q ss_pred cCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch-
Q psy2371 388 KLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH- 466 (816)
Q Consensus 388 ~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~- 466 (816)
..++......|..++.+.+... ...++||||+|+..++.|+..|...|+.+..||+...
T Consensus 222 ------------------q~~~~v~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q 281 (629)
T PRK11634 222 ------------------QSYWTVWGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQ 281 (629)
T ss_pred ------------------EEEEEechhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCH
Confidence 0112233456777777766432 3457999999999999999999999999999999854
Q ss_pred -HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEE
Q psy2371 467 -KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHII 545 (816)
Q Consensus 467 -~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI 545 (816)
+|+..+-.+....-.|+||||+|+||+|| |.|. |||
T Consensus 282 ~~R~~il~~Fr~G~~~ILVATdv~arGIDi--------------------------------------p~V~-----~VI 318 (629)
T PRK11634 282 ALREQTLERLKDGRLDILIATDVAARGLDV--------------------------------------ERIS-----LVV 318 (629)
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHhcCCCc--------------------------------------ccCC-----EEE
Confidence 45554444554455799999999999999 5676 999
Q ss_pred EecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 546 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 546 ~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+++.|.+...|.||+|||||.|+.|.+++|++..|.
T Consensus 319 ~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 319 NYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EeCCCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999999999999999987663
No 35
>KOG0335|consensus
Probab=100.00 E-value=6.9e-41 Score=372.77 Aligned_cols=327 Identities=20% Similarity=0.190 Sum_probs=257.9
Q ss_pred HHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-------------CCcEEEEeCcHHHHHHH
Q psy2371 73 SKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-------------GQGVHIVTISDYLAKRD 137 (816)
Q Consensus 73 ~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-------------g~~V~VvT~n~yLA~Rd 137 (816)
..|.-+-.|+|||..+++++..|+ +|.|+||+|||.+|++|++-.++. +.+++|++||||||.|+
T Consensus 89 i~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi 168 (482)
T KOG0335|consen 89 IKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQI 168 (482)
T ss_pred cccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHH
Confidence 455556699999999999999998 999999999999999999987763 24689999999999999
Q ss_pred HHHHHHHhhhcCCeEEEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhh
Q psy2371 138 AEWMSVLYNWLGLSIGVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILID 215 (816)
Q Consensus 138 ~e~~~~l~~~lglsv~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiD 215 (816)
+++.+.+.-..++.+..+++|.+ .+.+...-+|||+++|||+| .|.+ +.+...+..+.|+||||||.|| |
T Consensus 169 ~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL-----~d~~--e~g~i~l~~~k~~vLDEADrMl-D 240 (482)
T KOG0335|consen 169 YNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRL-----KDLI--ERGKISLDNCKFLVLDEADRML-D 240 (482)
T ss_pred HHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchh-----hhhh--hcceeehhhCcEEEecchHHhh-h
Confidence 99999999899999999999966 34455556899999999998 3433 2345567788999999999999 7
Q ss_pred -ccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHH
Q psy2371 216 -EARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKM 294 (816)
Q Consensus 216 -ea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~ 294 (816)
.+ |.+.|++|+..+... ..+.+++++||++-...+..+.
T Consensus 241 ~mg----------------F~p~Ir~iv~~~~~~---------------------~~~~~qt~mFSAtfp~~iq~l~--- 280 (482)
T KOG0335|consen 241 EMG----------------FEPQIRKIVEQLGMP---------------------PKNNRQTLLFSATFPKEIQRLA--- 280 (482)
T ss_pred hcc----------------ccccHHHHhcccCCC---------------------CccceeEEEEeccCChhhhhhH---
Confidence 54 556999998877431 0124788999999887776632
Q ss_pred HHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccc
Q psy2371 295 ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTG 374 (816)
Q Consensus 295 Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTG 374 (816)
+ .++..+ |+-.-
T Consensus 281 ---~-~fl~~~--yi~la-------------------------------------------------------------- 292 (482)
T KOG0335|consen 281 ---A-DFLKDN--YIFLA-------------------------------------------------------------- 292 (482)
T ss_pred ---H-HHhhcc--ceEEE--------------------------------------------------------------
Confidence 2 222211 43210
Q ss_pred cccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhc---cCC----CcEEEEEcccHhHHHH
Q psy2371 375 TAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCY---IKE----QPVLVGTTSIENSELL 447 (816)
Q Consensus 375 Ta~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~---~~g----rpVLVft~si~~se~L 447 (816)
|..+-+..++. .+-++|+.+.+|...+++.+.... ..+ ..+||||.+++.+..|
T Consensus 293 ----------------V~rvg~~~~ni---~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l 353 (482)
T KOG0335|consen 293 ----------------VGRVGSTSENI---TQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADEL 353 (482)
T ss_pred ----------------Eeeeccccccc---eeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHH
Confidence 01111111111 012467778888888888876543 222 2499999999999999
Q ss_pred HHHHHhCCCCeEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHH
Q psy2371 448 SNILKKNNLPHSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKL 525 (816)
Q Consensus 448 s~~L~~~gi~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (816)
+..|...|+++..+|+. |.+||..+-.+...+..|+||||+|+||+||
T Consensus 354 ~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi------------------------------ 403 (482)
T KOG0335|consen 354 AAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDI------------------------------ 403 (482)
T ss_pred HHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCC------------------------------
Confidence 99999999999999998 6677777777777777899999999999999
Q ss_pred HHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEec
Q psy2371 526 KNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 577 (816)
Q Consensus 526 ~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~ls 577 (816)
|+|. ||||||+|.+...|.||+|||||.|..|.|..|++
T Consensus 404 --------~~V~-----hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 404 --------PNVK-----HVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred --------CCCc-----eeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 6787 99999999999999999999999999999999998
No 36
>KOG0341|consensus
Probab=100.00 E-value=1.9e-41 Score=361.55 Aligned_cols=315 Identities=22% Similarity=0.236 Sum_probs=248.3
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-----------CCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-----------GQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-----------g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
+.|+|+|++|+|+++.|+ |+-+-||+||||+|+||++..||. |.-.+|+||+|+||+|.++.+..++
T Consensus 191 ~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 389999999999999999 999999999999999999998873 5558999999999999999999998
Q ss_pred hhcC------CeEEEecCCCCHHHHHh--hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 146 NWLG------LSIGVNSSEISHSLKKK--SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 146 ~~lg------lsv~~i~~~~~~~~r~~--~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
..|+ +++++.+||++..++.. ..+.+|+++||||| -|.|.. ..+.+.-++|+.+||||+|+ |.+
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL-~DmL~K------K~~sLd~CRyL~lDEADRmi-DmG 342 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL-MDMLAK------KIMSLDACRYLTLDEADRMI-DMG 342 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH-HHHHHH------hhccHHHHHHhhhhhHHHHh-hcc
Confidence 8773 67788899998655443 34789999999998 455443 34566789999999999998 887
Q ss_pred CCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHH
Q psy2371 218 RTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALR 297 (816)
Q Consensus 218 ~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~ 297 (816)
|.+.|..|+..++. .+++++||++...++..+. .+||
T Consensus 343 ----------------FEddir~iF~~FK~-------------------------QRQTLLFSATMP~KIQ~FA-kSAL- 379 (610)
T KOG0341|consen 343 ----------------FEDDIRTIFSFFKG-------------------------QRQTLLFSATMPKKIQNFA-KSAL- 379 (610)
T ss_pred ----------------chhhHHHHHHHHhh-------------------------hhheeeeeccccHHHHHHH-Hhhc-
Confidence 67789888888875 3788899999999988765 3333
Q ss_pred HHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhccccccc
Q psy2371 298 AHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAE 377 (816)
Q Consensus 298 A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~ 377 (816)
. ..|--+-||. |.|.
T Consensus 380 -----V------------KPvtvNVGRA------------------------------------------------GAAs 394 (610)
T KOG0341|consen 380 -----V------------KPVTVNVGRA------------------------------------------------GAAS 394 (610)
T ss_pred -----c------------cceEEecccc------------------------------------------------cccc
Confidence 1 1111122221 1110
Q ss_pred chHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCC
Q psy2371 378 TEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLP 457 (816)
Q Consensus 378 te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~ 457 (816)
- +-+++ +-|+..+.|.-.+++-+ .++..||||||..+..++.++++|--.|+.
T Consensus 395 l--dViQe----------------------vEyVkqEaKiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLLlKGVE 447 (610)
T KOG0341|consen 395 L--DVIQE----------------------VEYVKQEAKIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLLLKGVE 447 (610)
T ss_pred h--hHHHH----------------------HHHHHhhhhhhhHHHHh---ccCCCceEEEeccccChHHHHHHHHHccce
Confidence 0 00000 11233445554444432 245679999999999999999999999999
Q ss_pred eEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhh
Q psy2371 458 HSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDK 535 (816)
Q Consensus 458 ~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (816)
...+||. |.+|...|-++...+..|+||||+|+.|+|+ |+
T Consensus 448 avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDF--------------------------------------p~ 489 (610)
T KOG0341|consen 448 AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDF--------------------------------------PD 489 (610)
T ss_pred eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCC--------------------------------------cc
Confidence 9999997 5667778887765567899999999999999 56
Q ss_pred hhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccc
Q psy2371 536 VISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLD 579 (816)
Q Consensus 536 V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsle 579 (816)
+. ||||||+|+..+.|.||+|||||.|+.|-+.+|++-.
T Consensus 490 iq-----HVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 490 IQ-----HVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred ch-----hhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 76 9999999999999999999999999999999999754
No 37
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.6e-40 Score=373.01 Aligned_cols=320 Identities=20% Similarity=0.204 Sum_probs=237.3
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC---------CcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG---------QGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g---------~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
+|+ .|+|+|..+++.+++|+ |+.++||+|||++|++|++...+.+ ..++|++||++||.|..+++..+
T Consensus 19 ~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 19 QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 344 89999999999999998 9999999999999999999654432 25999999999999999999999
Q ss_pred hhhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcce
Q psy2371 145 YNWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLI 222 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpli 222 (816)
...+++++..++|+.+...+ ...-.+||+|+||++| .+++..+ ...+..++++||||||.|+ |.+
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL-~~~~~~~------~~~l~~v~~lViDEah~ll-~~~----- 165 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL-LDLEHQN------AVKLDQVEILVLDEADRML-DMG----- 165 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHH-HHHHHcC------CcccccceEEEeecHHHHh-ccc-----
Confidence 99999999999999875433 3334689999999998 4544332 3346789999999999998 543
Q ss_pred eccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHh
Q psy2371 223 ISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLY 302 (816)
Q Consensus 223 isg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~ 302 (816)
|...+..++..++. +.+.+.||++....++.+. ..++
T Consensus 166 -----------~~~~i~~il~~l~~-------------------------~~q~l~~SAT~~~~~~~l~-------~~~~ 202 (456)
T PRK10590 166 -----------FIHDIRRVLAKLPA-------------------------KRQNLLFSATFSDDIKALA-------EKLL 202 (456)
T ss_pred -----------cHHHHHHHHHhCCc-------------------------cCeEEEEeCCCcHHHHHHH-------HHHc
Confidence 33366777777764 3467888998776665543 1222
Q ss_pred ccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHH
Q psy2371 303 HKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYE 382 (816)
Q Consensus 303 ~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e 382 (816)
.. ..++. +...+.....|.
T Consensus 203 ~~-~~~i~------------------------------------~~~~~~~~~~i~------------------------ 221 (456)
T PRK10590 203 HN-PLEIE------------------------------------VARRNTASEQVT------------------------ 221 (456)
T ss_pred CC-CeEEE------------------------------------Eeccccccccee------------------------
Confidence 21 11110 000000000110
Q ss_pred HHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEc
Q psy2371 383 FQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462 (816)
Q Consensus 383 ~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLn 462 (816)
+.+.+.+...|...+...+ .. ....++||||+|+..++.|+..|.+.|+++..+|
T Consensus 222 -----------------------~~~~~~~~~~k~~~l~~l~-~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lh 276 (456)
T PRK10590 222 -----------------------QHVHFVDKKRKRELLSQMI-GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH 276 (456)
T ss_pred -----------------------EEEEEcCHHHHHHHHHHHH-Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 0122334444544443333 22 2456799999999999999999999999999999
Q ss_pred CCchHHHHHHHH--HcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccC
Q psy2371 463 AKQHKLEAQIIA--QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSG 540 (816)
Q Consensus 463 ak~~~rEa~ii~--~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 540 (816)
|+..+.++..+. +......|+||||+++||+|| |+|.
T Consensus 277 g~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi--------------------------------------p~v~--- 315 (456)
T PRK10590 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDI--------------------------------------EELP--- 315 (456)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc--------------------------------------ccCC---
Confidence 996655544344 443345799999999999999 5676
Q ss_pred ceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 541 GLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|||+++.|.+...|.||+|||||.|.+|.+..|++.+|.
T Consensus 316 --~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 316 --HVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred --EEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 999999999999999999999999999999999988774
No 38
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-39 Score=371.94 Aligned_cols=318 Identities=18% Similarity=0.215 Sum_probs=240.7
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC---CcEEEEeCcHHHHHHHHHHHHHHhhhc-C
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG---QGVHIVTISDYLAKRDAEWMSVLYNWL-G 149 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~l-g 149 (816)
+|+ .|+|+|..+++.+++|+ |+.++||+|||++|.+|++.....+ ..++|++||++||.|.++++..+...+ +
T Consensus 22 ~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 666 59999999999999998 9999999999999999998543332 368999999999999999999998866 8
Q ss_pred CeEEEecCCCCHHHHHh--hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 150 LSIGVNSSEISHSLKKK--SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~--~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
+++..++||.+...+.. .-+++|++||||+| .++++. .......+.++|+||||.|+ |.+
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl-~~~l~~------~~~~l~~l~~lViDEad~~l-~~g---------- 163 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRI-LDHLRK------GTLDLDALNTLVLDEADRML-DMG---------- 163 (460)
T ss_pred cEEEEEECCCChHHHHHHhcCCCCEEEEChHHH-HHHHHc------CCccHHHCCEEEEECHHHHh-CcC----------
Confidence 99999999988654333 34789999999998 555543 23456789999999999998 543
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcc
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKH 307 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~d 307 (816)
|...+..++..++. ..+.++||++....++++. ..++.....
T Consensus 164 ------~~~~l~~i~~~~~~-------------------------~~q~ll~SAT~~~~~~~l~-------~~~~~~~~~ 205 (460)
T PRK11776 164 ------FQDAIDAIIRQAPA-------------------------RRQTLLFSATYPEGIAAIS-------QRFQRDPVE 205 (460)
T ss_pred ------cHHHHHHHHHhCCc-------------------------ccEEEEEEecCcHHHHHHH-------HHhcCCCEE
Confidence 33377778887765 3567888998877766654 222221111
Q ss_pred eEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHh
Q psy2371 308 YIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIY 387 (816)
Q Consensus 308 YiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y 387 (816)
+.+...+ ....|. |
T Consensus 206 -------------------------------------i~~~~~~-~~~~i~-~--------------------------- 219 (460)
T PRK11776 206 -------------------------------------VKVESTH-DLPAIE-Q--------------------------- 219 (460)
T ss_pred -------------------------------------EEECcCC-CCCCee-E---------------------------
Confidence 0010000 000111 0
Q ss_pred cCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 388 KLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 388 ~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
.++.....+|+.++...+... .+.++||||+|++.++.+++.|...|+++..+||+..+
T Consensus 220 -------------------~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~ 278 (460)
T PRK11776 220 -------------------RFYEVSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQ 278 (460)
T ss_pred -------------------EEEEeCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 011223345777777766432 45679999999999999999999999999999998655
Q ss_pred HHHHHHHHcC--CCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEE
Q psy2371 468 LEAQIIAQAG--HPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHII 545 (816)
Q Consensus 468 rEa~ii~~Ag--~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI 545 (816)
.|++.+..++ ....|+||||+|+||+|| |+|. |||
T Consensus 279 ~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi--------------------------------------~~v~-----~VI 315 (460)
T PRK11776 279 RDRDQVLVRFANRSCSVLVATDVAARGLDI--------------------------------------KALE-----AVI 315 (460)
T ss_pred HHHHHHHHHHHcCCCcEEEEecccccccch--------------------------------------hcCC-----eEE
Confidence 5554444444 345899999999999999 5676 999
Q ss_pred EecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 546 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 546 ~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
+++.|.+...|.||+|||||.|..|.+.+|++.+|
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 99999999999999999999999999999998876
No 39
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.1e-40 Score=378.68 Aligned_cols=321 Identities=18% Similarity=0.214 Sum_probs=238.6
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh----------cCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL----------SGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL----------~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.|+ .|+|+|..+++.+++|+ |+.++||+|||++|++|++.+.+ .|..++|++||++||.|..+++..
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 455 79999999999999998 99999999999999999997654 244699999999999999999999
Q ss_pred HhhhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 144 LYNWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 144 l~~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
+.+.+++++.+++||.+...+ ....+++|++||||+| .|+|..+ ...++.+.++||||||.|+ |.+
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL-~~~l~~~------~~~l~~v~~lViDEad~ml-~~g---- 286 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL-IDLLSKH------DIELDNVSVLVLDEVDCML-ERG---- 286 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CccchheeEEEeecHHHHh-hcc----
Confidence 999999999999988764332 3334789999999998 5665543 3456789999999999998 543
Q ss_pred eeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHH
Q psy2371 222 IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVL 301 (816)
Q Consensus 222 iisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l 301 (816)
|.+.+.+++..++. .+.++||++....++++. ..+
T Consensus 287 ------------f~~~i~~i~~~l~~--------------------------~q~l~~SATl~~~v~~l~-------~~~ 321 (518)
T PLN00206 287 ------------FRDQVMQIFQALSQ--------------------------PQVLLFSATVSPEVEKFA-------SSL 321 (518)
T ss_pred ------------hHHHHHHHHHhCCC--------------------------CcEEEEEeeCCHHHHHHH-------HHh
Confidence 44466667766643 467889998877776653 222
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
+. +++ .|+ +...+.....+
T Consensus 322 ~~---~~~-------~i~---------------------------~~~~~~~~~~v------------------------ 340 (518)
T PLN00206 322 AK---DII-------LIS---------------------------IGNPNRPNKAV------------------------ 340 (518)
T ss_pred CC---CCE-------EEE---------------------------eCCCCCCCcce------------------------
Confidence 21 111 000 00000000000
Q ss_pred HHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh-CCCCeEE
Q psy2371 382 EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK-NNLPHSV 460 (816)
Q Consensus 382 e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~-~gi~~~v 460 (816)
....++.....|...+.+.+........|+||||+|+..++.|+..|.. .|+++..
T Consensus 341 -----------------------~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~ 397 (518)
T PLN00206 341 -----------------------KQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALS 397 (518)
T ss_pred -----------------------eEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEE
Confidence 0012233334455555555544333345799999999999999999975 6999999
Q ss_pred EcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhc
Q psy2371 461 LNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVIS 538 (816)
Q Consensus 461 Lnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 538 (816)
+||+....|+..+.++++ .-.|+||||.||||+|| |.|.
T Consensus 398 ~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi--------------------------------------p~v~- 438 (518)
T PLN00206 398 IHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL--------------------------------------LRVR- 438 (518)
T ss_pred eeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc--------------------------------------ccCC-
Confidence 999865555544444343 44799999999999999 5676
Q ss_pred cCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 539 SGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 539 ~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|||+++.|.+...|.||+|||||.|.+|.+.+|++.+|.
T Consensus 439 ----~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 439 ----QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred ----EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 999999999999999999999999999999999988773
No 40
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-39 Score=378.33 Aligned_cols=322 Identities=18% Similarity=0.174 Sum_probs=241.4
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc----------CCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS----------GQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~----------g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+|+ .|||+|..+++.+++|+ |++++||+|||++|++|++...+. +..++|++||++||.|.++.+..
T Consensus 27 ~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 27 AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 455 79999999999999998 999999999999999999965442 24699999999999999999999
Q ss_pred HhhhcCCeEEEecCCCCHHHHHhh--cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 144 LYNWLGLSIGVNSSEISHSLKKKS--YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 144 l~~~lglsv~~i~~~~~~~~r~~~--y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
+...+|+++++++|+.+...+... -++||+++||++| +++|..+ ....+..+.++||||||.|+ |.+
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL-~~~l~~~-----~~~~l~~v~~lViDEAh~ll-d~g---- 175 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL-IDYVKQH-----KVVSLHACEICVLDEADRMF-DLG---- 175 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHH-HHHHHhc-----cccchhheeeeEecCHHHHh-hcc----
Confidence 999999999999999886544332 3689999999998 6666542 12345678999999999998 543
Q ss_pred eeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHH
Q psy2371 222 IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVL 301 (816)
Q Consensus 222 iisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l 301 (816)
|...+..++..++.. ...+.++||++....+..+. ...
T Consensus 176 ------------f~~~i~~il~~lp~~-----------------------~~~q~ll~SATl~~~v~~l~-------~~~ 213 (572)
T PRK04537 176 ------------FIKDIRFLLRRMPER-----------------------GTRQTLLFSATLSHRVLELA-------YEH 213 (572)
T ss_pred ------------hHHHHHHHHHhcccc-----------------------cCceEEEEeCCccHHHHHHH-------HHH
Confidence 334777777777631 02456788988766554433 112
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
+......++ ..++.+...+.
T Consensus 214 l~~p~~i~v-------------------------------------~~~~~~~~~i~----------------------- 233 (572)
T PRK04537 214 MNEPEKLVV-------------------------------------ETETITAARVR----------------------- 233 (572)
T ss_pred hcCCcEEEe-------------------------------------cccccccccee-----------------------
Confidence 211111111 00000000000
Q ss_pred HHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEE
Q psy2371 382 EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVL 461 (816)
Q Consensus 382 e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vL 461 (816)
..+++....+|...++..+.. ..+.++||||+|++.++.|++.|.+.|+++..+
T Consensus 234 ------------------------q~~~~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~l 287 (572)
T PRK04537 234 ------------------------QRIYFPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVL 287 (572)
T ss_pred ------------------------EEEEecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 012233456677766666543 256789999999999999999999999999999
Q ss_pred cCCchHHHHHHHH--HcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 462 NAKQHKLEAQIIA--QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 462 nak~~~rEa~ii~--~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
|++....+++.+. +......|+||||+++||+|| |+|.
T Consensus 288 hg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi--------------------------------------p~V~-- 327 (572)
T PRK04537 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI--------------------------------------DGVK-- 327 (572)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc--------------------------------------cCCC--
Confidence 9996554444444 443445899999999999999 5676
Q ss_pred CceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 540 GGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
||||++.|.+...|.||+|||||.|.+|.++.|++..|
T Consensus 328 ---~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 328 ---YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred ---EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 99999999999999999999999999999999998765
No 41
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.5e-38 Score=360.40 Aligned_cols=320 Identities=21% Similarity=0.206 Sum_probs=233.5
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-------CCcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-------GQGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-------g~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
.|+ .|+++|..+++.+++|+ |+.++||+|||++|++|++...+. +..++|++||++||.|.++++..+..
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 344 69999999999999987 999999999999999999965542 24699999999999999999999999
Q ss_pred hcCCeEEEecCCCCHHHHHhh--cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceec
Q psy2371 147 WLGLSIGVNSSEISHSLKKKS--YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIIS 224 (816)
Q Consensus 147 ~lglsv~~i~~~~~~~~r~~~--y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliis 224 (816)
++|++++.++||.+...+... -++||++|||++| ++++... ....+.+.++||||||.|+ |.+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~~~~~------~~~~~~v~~lViDEah~~l-~~~------- 163 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRL-LQYIKEE------NFDCRAVETLILDEADRML-DMG------- 163 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CcCcccCCEEEEECHHHHh-CCC-------
Confidence 999999999999886554433 3689999999998 5665432 3346789999999999998 543
Q ss_pred cccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHH-HHHHHHHHHHHHHHHHhc
Q psy2371 225 GEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYE-KYENILIKMALRAHVLYH 303 (816)
Q Consensus 225 g~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~-~~e~~l~~~Al~A~~l~~ 303 (816)
|...+..+...++. ..+.+.||++... .+..+. ..++.
T Consensus 164 ---------~~~~~~~i~~~~~~-------------------------~~q~~~~SAT~~~~~~~~~~-------~~~~~ 202 (434)
T PRK11192 164 ---------FAQDIETIAAETRW-------------------------RKQTLLFSATLEGDAVQDFA-------ERLLN 202 (434)
T ss_pred ---------cHHHHHHHHHhCcc-------------------------ccEEEEEEeecCHHHHHHHH-------HHHcc
Confidence 33355555555543 2456778887542 233322 12221
Q ss_pred cCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHH
Q psy2371 304 KNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEF 383 (816)
Q Consensus 304 ~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~ 383 (816)
.... +.+.+.......|.
T Consensus 203 ~~~~-------------------------------------i~~~~~~~~~~~i~------------------------- 220 (434)
T PRK11192 203 DPVE-------------------------------------VEAEPSRRERKKIH------------------------- 220 (434)
T ss_pred CCEE-------------------------------------EEecCCcccccCce-------------------------
Confidence 1110 00000000000010
Q ss_pred HHHhcCeEEEcCCCCccccccCcCeEec-ChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEc
Q psy2371 384 QEIYKLETITVPPNKINKRKDLQDKIYK-TMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462 (816)
Q Consensus 384 ~~~Y~l~vv~IPt~~p~~r~d~~d~v~~-t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLn 462 (816)
...+.. +...|...+...+. . ....++||||+|++.++.++..|+..|+++..+|
T Consensus 221 ----------------------~~~~~~~~~~~k~~~l~~l~~-~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~ 276 (434)
T PRK11192 221 ----------------------QWYYRADDLEHKTALLCHLLK-Q-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLE 276 (434)
T ss_pred ----------------------EEEEEeCCHHHHHHHHHHHHh-c-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEec
Confidence 001111 13455555555443 2 2456799999999999999999999999999999
Q ss_pred CCchH--HHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccC
Q psy2371 463 AKQHK--LEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSG 540 (816)
Q Consensus 463 ak~~~--rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 540 (816)
|+..+ |+..+-.+..+...|+||||+++||+|| |+|.
T Consensus 277 g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi--------------------------------------p~v~--- 315 (434)
T PRK11192 277 GEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI--------------------------------------DDVS--- 315 (434)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC--------------------------------------CCCC---
Confidence 98554 4444444444455899999999999999 5676
Q ss_pred ceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 541 GLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|||+++.|.|...|.||+|||||.|.+|.+.+|++.+|.
T Consensus 316 --~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 316 --HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred --EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 999999999999999999999999999999999987663
No 42
>KOG0339|consensus
Probab=100.00 E-value=2.1e-38 Score=347.39 Aligned_cols=373 Identities=18% Similarity=0.233 Sum_probs=285.8
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccCC------Ccchh--hHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeee
Q psy2371 31 SVMQKLSDEELQNQTSKLKQSIHSGE------TLDSI--LPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEM 100 (816)
Q Consensus 31 ~~~~~lsd~~l~~~~~~~~~~~~~g~------~ld~~--l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem 100 (816)
..++.|++.+...+...+--|..... +.... -...|..+|...+ -.|||+|-+++|..+.|+ |.-+
T Consensus 192 esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey----~kptpiq~qalptalsgrdvigIA 267 (731)
T KOG0339|consen 192 ESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEY----EKPTPIQCQALPTALSGRDVIGIA 267 (731)
T ss_pred hhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhc----ccCCcccccccccccccccchhee
Confidence 36778888887777666665543211 11111 1223445555444 379999999999999999 8899
Q ss_pred cCCCCchHHHHHHHHHHHh------cCCc--EEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh--cCC
Q psy2371 101 QTGEGKTLVATLAAYLNSL------SGQG--VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS--YEA 170 (816)
Q Consensus 101 ~TGEGKTL~~~Lpa~l~aL------~g~~--V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~--y~~ 170 (816)
+||+|||.||+.|++.+.+ .|.+ .+|++||++||.|++.++..|.+..||.+.+++||.+..++... -+|
T Consensus 268 ktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~ 347 (731)
T KOG0339|consen 268 KTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGA 347 (731)
T ss_pred eccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCC
Confidence 9999999999999998864 2443 78999999999999999999999999999999999986554433 489
Q ss_pred CEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhh
Q psy2371 171 DITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEID 250 (816)
Q Consensus 171 dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~ 250 (816)
.||++||||| .|... .....++.+.|+|+||||+|+ |++ |..++..|..++.+
T Consensus 348 EivVaTPgRl-----id~Vk--mKatn~~rvS~LV~DEadrmf-dmG----------------fe~qVrSI~~hirp--- 400 (731)
T KOG0339|consen 348 EIVVATPGRL-----IDMVK--MKATNLSRVSYLVLDEADRMF-DMG----------------FEPQVRSIKQHIRP--- 400 (731)
T ss_pred eEEEechHHH-----HHHHH--hhcccceeeeEEEEechhhhh-ccc----------------cHHHHHHHHhhcCC---
Confidence 9999999998 44332 234567889999999999999 876 66688888888765
Q ss_pred hhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeeccccccccccc
Q psy2371 251 TKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRR 330 (816)
Q Consensus 251 ~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr 330 (816)
++++++|+++...+++++. +.++. |.|.+| +|.+-
T Consensus 401 ----------------------drQtllFsaTf~~kIe~la-------rd~L~---------dpVrvV---qg~vg---- 435 (731)
T KOG0339|consen 401 ----------------------DRQTLLFSATFKKKIEKLA-------RDILS---------DPVRVV---QGEVG---- 435 (731)
T ss_pred ----------------------cceEEEeeccchHHHHHHH-------HHHhc---------CCeeEE---Eeehh----
Confidence 5888999999999999875 33332 222222 11110
Q ss_pred chhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEe
Q psy2371 331 WAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIY 410 (816)
Q Consensus 331 ~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~ 410 (816)
++ -..||. .| .|+
T Consensus 436 ---------ea------------n~dITQ------------------------------~V----------------~V~ 448 (731)
T KOG0339|consen 436 ---------EA------------NEDITQ------------------------------TV----------------SVC 448 (731)
T ss_pred ---------cc------------ccchhh------------------------------ee----------------eec
Confidence 01 112331 11 345
Q ss_pred cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHH--HHHHHcCCCccEEEecCc
Q psy2371 411 KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNM 488 (816)
Q Consensus 411 ~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnm 488 (816)
.+...||+.+++.+.+....| .||||++-.+.++.++..|+-.|+.+..||++..+.|+ .+-.+.-....|+||||+
T Consensus 449 ~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDv 527 (731)
T KOG0339|consen 449 PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDV 527 (731)
T ss_pred cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeH
Confidence 568899999999988887776 59999999999999999999999999999998655444 454455445689999999
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
|+||+||+ .++ .|||+|.-.+..++.||+|||||+|.
T Consensus 528 aargldI~--------------------------------------~ik-----TVvnyD~ardIdththrigrtgRag~ 564 (731)
T KOG0339|consen 528 AARGLDIP--------------------------------------SIK-----TVVNYDFARDIDTHTHRIGRTGRAGE 564 (731)
T ss_pred hhcCCCcc--------------------------------------ccc-----eeecccccchhHHHHHHhhhcccccc
Confidence 99999994 454 89999999999999999999999999
Q ss_pred CceEEEEeccchhhhhhcChHHHHH
Q psy2371 569 PGSSRFYLSLDDSLLKFFSSDQIKI 593 (816)
Q Consensus 569 pG~s~~~lsleD~l~~~~~~~~~~~ 593 (816)
.|.+.++|+..|.- |+++-+..
T Consensus 565 kGvayTlvTeKDa~---fAG~LVnn 586 (731)
T KOG0339|consen 565 KGVAYTLVTEKDAE---FAGHLVNN 586 (731)
T ss_pred cceeeEEechhhHH---HhhHHHHH
Confidence 99999999998854 55654543
No 43
>KOG0326|consensus
Probab=100.00 E-value=3.3e-39 Score=338.31 Aligned_cols=337 Identities=17% Similarity=0.164 Sum_probs=262.1
Q ss_pred CCCcchh--hHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---CCcEEEE
Q psy2371 55 GETLDSI--LPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---GQGVHIV 127 (816)
Q Consensus 55 g~~ld~~--l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~Vv 127 (816)
|....|. -++.+--++|++|. +|.|+|..++|+.+.|+ +|.++.|+|||.+|.+|++...-. .-+..|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~e----kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~il 159 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFE----KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIIL 159 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccC----CCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEE
Confidence 4444443 46777777777776 79999999999999999 999999999999999999964322 2368999
Q ss_pred eCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCH--HHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEE
Q psy2371 128 TISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISH--SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVI 205 (816)
Q Consensus 128 T~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~--~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~I 205 (816)
.||||||-|.++.+..+.+.+|++|.+.+||.+. +.-+.....++++|||||+ .|.+. ++.-.+..+..+|
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRI-----lDL~~--KgVa~ls~c~~lV 232 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRI-----LDLAK--KGVADLSDCVILV 232 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhH-----HHHHh--cccccchhceEEE
Confidence 9999999999999999999999999999999873 3334444679999999998 45442 3445678899999
Q ss_pred ecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEE-EechhhH
Q psy2371 206 LDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQV-FLTENGY 284 (816)
Q Consensus 206 vDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v-~lt~~g~ 284 (816)
+||||.+|.-+ |.+.+.+++..||+ .+++ ++|++..
T Consensus 233 ~DEADKlLs~~-----------------F~~~~e~li~~lP~--------------------------~rQillySATFP 269 (459)
T KOG0326|consen 233 MDEADKLLSVD-----------------FQPIVEKLISFLPK--------------------------ERQILLYSATFP 269 (459)
T ss_pred echhhhhhchh-----------------hhhHHHHHHHhCCc--------------------------cceeeEEecccc
Confidence 99999999443 55688899999986 4454 5688776
Q ss_pred HHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHh
Q psy2371 285 EKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFR 364 (816)
Q Consensus 285 ~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~ 364 (816)
-.+..+.. ++ ++ .-|.|. +.+ ..|+..||
T Consensus 270 ~tVk~Fm~------~~-l~--kPy~IN-----LM~-------------------------------eLtl~Gvt------ 298 (459)
T KOG0326|consen 270 LTVKGFMD------RH-LK--KPYEIN-----LME-------------------------------ELTLKGVT------ 298 (459)
T ss_pred hhHHHHHH------Hh-cc--Ccceee-----hhh-------------------------------hhhhcchh------
Confidence 66666541 11 11 122221 111 11222232
Q ss_pred hhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhH
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENS 444 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~s 444 (816)
+.+.|+.+.+|...+-....+. .-+| .+|||+|...+
T Consensus 299 -----------------------------------------QyYafV~e~qKvhCLntLfskL-qINQ-sIIFCNS~~rV 335 (459)
T KOG0326|consen 299 -----------------------------------------QYYAFVEERQKVHCLNTLFSKL-QINQ-SIIFCNSTNRV 335 (459)
T ss_pred -----------------------------------------hheeeechhhhhhhHHHHHHHh-cccc-eEEEeccchHh
Confidence 1246788899988766655443 4555 68999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHH
Q psy2371 445 ELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKI 522 (816)
Q Consensus 445 e~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~ 522 (816)
|.|++...+.|++|..+|||+.+..+.++-.-++ ..+.+||||+.-||+||
T Consensus 336 ELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi--------------------------- 388 (459)
T KOG0326|consen 336 ELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI--------------------------- 388 (459)
T ss_pred HHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc---------------------------
Confidence 9999999999999999999977666665554444 55899999999999999
Q ss_pred HHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhh
Q psy2371 523 KKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 523 ~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l 582 (816)
+.|. .|||+|.|.+++.|.||+||+||.|.+|.|+.+++.+|..
T Consensus 389 -----------qavN-----vVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 389 -----------QAVN-----VVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred -----------ceee-----EEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 5676 9999999999999999999999999999999999999954
No 44
>KOG0334|consensus
Probab=100.00 E-value=1.1e-37 Score=367.19 Aligned_cols=325 Identities=22% Similarity=0.244 Sum_probs=258.7
Q ss_pred Hhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc--------CCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 76 VLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS--------GQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~--------g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
.+|+ +|+|||-+|+|+++.|+ |+.++||+|||++|+||++.+-+. |.-++||||||+||.|+..|+..|
T Consensus 382 kl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 382 KLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred HhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 3554 99999999999999999 999999999999999999976542 444899999999999999999999
Q ss_pred hhhcCCeEEEecCCCCHHHHH--hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcce
Q psy2371 145 YNWLGLSIGVNSSEISHSLKK--KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLI 222 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r~--~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpli 222 (816)
.+.+|+.+.+++||....+.. ...++.|++||||++ .|.|--| +.....++.+.|+|+||||+|+ |.+.
T Consensus 462 ~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRm-iD~l~~n---~grvtnlrR~t~lv~deaDrmf-dmgf---- 532 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRM-IDILCAN---SGRVTNLRRVTYLVLDEADRMF-DMGF---- 532 (997)
T ss_pred HhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchh-hhhHhhc---CCccccccccceeeechhhhhh-eecc----
Confidence 999999999999998754332 234699999999998 5655433 2334566888899999999999 9874
Q ss_pred eccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHh
Q psy2371 223 ISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLY 302 (816)
Q Consensus 223 isg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~ 302 (816)
.+++..|+..+++ .+++++|+++-...++.+ |...+
T Consensus 533 ------------ePq~~~Ii~nlrp-------------------------drQtvlfSatfpr~m~~l-------a~~vl 568 (997)
T KOG0334|consen 533 ------------EPQITRILQNLRP-------------------------DRQTVLFSATFPRSMEAL-------ARKVL 568 (997)
T ss_pred ------------CcccchHHhhcch-------------------------hhhhhhhhhhhhHHHHHH-------HHHhh
Confidence 4466668888865 467888998877776554 33344
Q ss_pred ccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHH
Q psy2371 303 HKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYE 382 (816)
Q Consensus 303 ~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e 382 (816)
++.+. +||+ |+-+ ....|+
T Consensus 569 ~~Pve--------iiv~---~~sv--------------------------V~k~V~------------------------ 587 (997)
T KOG0334|consen 569 KKPVE--------IIVG---GRSV--------------------------VCKEVT------------------------ 587 (997)
T ss_pred cCCee--------EEEc---ccee--------------------------Eeccce------------------------
Confidence 44443 1221 1100 000000
Q ss_pred HHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEc
Q psy2371 383 FQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462 (816)
Q Consensus 383 ~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLn 462 (816)
..| .|...+.+|+..+.+.+.+....+ +++|||.+.+.+..|.+.|.+.|++|..||
T Consensus 588 ------q~v----------------~V~~~e~eKf~kL~eLl~e~~e~~-~tiiFv~~qe~~d~l~~~L~~ag~~~~slH 644 (997)
T KOG0334|consen 588 ------QVV----------------RVCAIENEKFLKLLELLGERYEDG-KTIIFVDKQEKADALLRDLQKAGYNCDSLH 644 (997)
T ss_pred ------EEE----------------EEecCchHHHHHHHHHHHHHhhcC-CEEEEEcCchHHHHHHHHHHhcCcchhhhc
Confidence 011 233447889999999888776654 799999999999999999999999999999
Q ss_pred CC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccC
Q psy2371 463 AK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSG 540 (816)
Q Consensus 463 ak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 540 (816)
|. |+.|+..|..+......+||||++++||+|++ ++.
T Consensus 645 Ggv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~--------------------------------------~l~--- 683 (997)
T KOG0334|consen 645 GGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK--------------------------------------ELI--- 683 (997)
T ss_pred CCCchHHHHhHHHHHhccCceEEEehhhhhcccccc--------------------------------------cce---
Confidence 97 78888888888777789999999999999995 333
Q ss_pred ceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 541 GLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
.||||+.|.-.+.|.||.|||||+|+.|.|.+|++++|
T Consensus 684 --Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 684 --LVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred --EEEEcccchhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 89999999999999999999999999999999999944
No 45
>KOG0348|consensus
Probab=100.00 E-value=1.5e-37 Score=342.87 Aligned_cols=360 Identities=20% Similarity=0.218 Sum_probs=240.7
Q ss_pred Hhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---------cCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 76 VLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---------SGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---------~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.++| .||.||..++|+|++|+ ++.++||+||||+|++|++.... .|.-++|+.||||||.|.++.+..
T Consensus 154 ~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qK 233 (708)
T KOG0348|consen 154 KMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQK 233 (708)
T ss_pred HhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHH
Confidence 3444 78999999999999999 99999999999999999996432 255689999999999999999999
Q ss_pred HhhhcCCeE-EEecCCCC--HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCc
Q psy2371 144 LYNWLGLSI-GVNSSEIS--HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTP 220 (816)
Q Consensus 144 l~~~lglsv-~~i~~~~~--~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tp 220 (816)
+.+.+-.-| |++.||-. .+.-+...+++|++|||||| .|+|.+ . .......++|+|+||+|++| |.+
T Consensus 234 Ll~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL-vDHLkn----T-~~i~~s~LRwlVlDEaDrll-eLG--- 303 (708)
T KOG0348|consen 234 LLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL-VDHLKN----T-KSIKFSRLRWLVLDEADRLL-ELG--- 303 (708)
T ss_pred HhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHH-HHHHhc----c-chheeeeeeEEEecchhHHH-hcc---
Confidence 988665444 45566654 23334456899999999998 455443 2 24555679999999999999 776
Q ss_pred ceeccccccchhhhHHHHhhHhhhccch-hhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHH
Q psy2371 221 LIISGEIKNNAQYFYKIINPIPKLLVPE-IDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAH 299 (816)
Q Consensus 221 liisg~~~~~~~~y~~~i~~iv~~L~~~-~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~ 299 (816)
|.+.|..|++.+... ..+ ..+-.+..+.+++++|++-.+.+.++. ..+|
T Consensus 304 -------------fekdit~Il~~v~~~~~~e-------------~~~~~lp~q~q~mLlSATLtd~V~rLa-~~sL--- 353 (708)
T KOG0348|consen 304 -------------FEKDITQILKAVHSIQNAE-------------CKDPKLPHQLQNMLLSATLTDGVNRLA-DLSL--- 353 (708)
T ss_pred -------------chhhHHHHHHHHhhccchh-------------cccccccHHHHhHhhhhhhHHHHHHHh-hccc---
Confidence 677888888877431 000 112223334677888999888888765 2222
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
+|.-||= .|+......|.- .|++ |-... +....+ |.++ -
T Consensus 354 ----kDpv~I~-------ld~s~~~~~p~~-------~a~~--ev~~~-~~~~~l----------------~~~~----i 392 (708)
T KOG0348|consen 354 ----KDPVYIS-------LDKSHSQLNPKD-------KAVQ--EVDDG-PAGDKL----------------DSFA----I 392 (708)
T ss_pred ----cCceeee-------ccchhhhcCcch-------hhhh--hcCCc-cccccc----------------cccc----C
Confidence 1222222 222111111100 0100 11111 100000 0000 0
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhh--ccCCCcEEEEEcccHhHHHHHHHHHhC---
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNC--YIKEQPVLVGTTSIENSELLSNILKKN--- 454 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~--~~~grpVLVft~si~~se~Ls~~L~~~--- 454 (816)
.+.|.+ .+++||+- -++-++...+.+. ....|.++||+.+.+.+|.=+.+|...
T Consensus 393 PeqL~q----ry~vVPpK-----------------LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 393 PEQLLQ----RYTVVPPK-----------------LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred cHHhhh----ceEecCCc-----------------hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 112333 24666752 2222333333222 124468999999999999777776532
Q ss_pred -------------------CCCeEEEcCCchHHHHHHHH--HcCCCccEEEecCccccCccccCCCCchhhHHHhhhcch
Q psy2371 455 -------------------NLPHSVLNAKQHKLEAQIIA--QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNIS 513 (816)
Q Consensus 455 -------------------gi~~~vLnak~~~rEa~ii~--~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~ 513 (816)
+.+..-|||...+.|+.-+- ++-....|++|||+||||+|.
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDl------------------ 513 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDL------------------ 513 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCC------------------
Confidence 22356789987766665444 444455799999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 514 SEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|. +||+|+.|-+...|.||+|||+|.|..|+|.+|+.+.+
T Consensus 514 --------------------P~V~-----~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 514 --------------------PHVG-----LVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred --------------------CCcC-----eEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccH
Confidence 7787 99999999999999999999999999999999998765
No 46
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-36 Score=348.83 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=233.6
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC----------CcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG----------QGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g----------~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.|+ .||++|..+++.+++|+ |+.++||+|||++|.+|++...+.. ..++|++||++||.|.++++..
T Consensus 105 ~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 565 69999999999999998 9999999999999999999765542 3689999999999999999999
Q ss_pred HhhhcCCeEEEecCCCCHHH--HHh-hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCc
Q psy2371 144 LYNWLGLSIGVNSSEISHSL--KKK-SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTP 220 (816)
Q Consensus 144 l~~~lglsv~~i~~~~~~~~--r~~-~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tp 220 (816)
+.+.+|+.+..++||.+... +.. ...++|+++||++| .+++.. ....++.++++||||||.++ +.+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~L-l~~~~~------~~~~l~~l~~lViDEah~l~-~~~--- 253 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL-LDFNQR------GEVHLDMVEVMVLDEADRML-DMG--- 253 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHH-HHHHHc------CCcccccCceEEechHHHHH-hcc---
Confidence 99999999999999876432 222 23589999999998 444322 23456789999999999988 443
Q ss_pred ceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHH
Q psy2371 221 LIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHV 300 (816)
Q Consensus 221 liisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~ 300 (816)
|...+.+++..++.. ...+.+.+|++....+..+. ..
T Consensus 254 -------------~~~~l~~i~~~~~~~-----------------------~~~q~i~~SAT~~~~~~~~~-------~~ 290 (475)
T PRK01297 254 -------------FIPQVRQIIRQTPRK-----------------------EERQTLLFSATFTDDVMNLA-------KQ 290 (475)
T ss_pred -------------cHHHHHHHHHhCCCC-----------------------CCceEEEEEeecCHHHHHHH-------HH
Confidence 333666677666530 02356777887554443332 11
Q ss_pred HhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchH
Q psy2371 301 LYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEA 380 (816)
Q Consensus 301 l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~ 380 (816)
++... .+ +.+.+++....++.
T Consensus 291 ~~~~~--------~~-----------------------------v~~~~~~~~~~~~~---------------------- 311 (475)
T PRK01297 291 WTTDP--------AI-----------------------------VEIEPENVASDTVE---------------------- 311 (475)
T ss_pred hccCC--------EE-----------------------------EEeccCcCCCCccc----------------------
Confidence 11110 00 00111110000000
Q ss_pred HHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEE
Q psy2371 381 YEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSV 460 (816)
Q Consensus 381 ~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~v 460 (816)
.........+|...+...+... .+.++||||+|++.++.++..|...|+++..
T Consensus 312 -------------------------~~~~~~~~~~k~~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~ 364 (475)
T PRK01297 312 -------------------------QHVYAVAGSDKYKLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQ 364 (475)
T ss_pred -------------------------EEEEEecchhHHHHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 0011222345666555555432 3457999999999999999999999999999
Q ss_pred EcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhc
Q psy2371 461 LNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVIS 538 (816)
Q Consensus 461 Lnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 538 (816)
+||.....++..+...++ ...|+||||+++||+|| ++|.
T Consensus 365 ~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi--------------------------------------~~v~- 405 (475)
T PRK01297 365 LSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI--------------------------------------DGIS- 405 (475)
T ss_pred EECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc--------------------------------------cCCC-
Confidence 999865555543444333 45799999999999999 5666
Q ss_pred cCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 539 SGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 539 ~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+||+++.|.|...|.||+|||||.|..|.+.+|++.+|.
T Consensus 406 ----~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 406 ----HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred ----EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 999999999999999999999999999999999986653
No 47
>KOG0346|consensus
Probab=100.00 E-value=4.6e-35 Score=317.60 Aligned_cols=373 Identities=17% Similarity=0.209 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---------CCcEEEEeCcH
Q psy2371 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---------GQGVHIVTISD 131 (816)
Q Consensus 63 ~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---------g~~V~VvT~n~ 131 (816)
+..+..+.+.+|. +|+-||.-+||.+++|+ +|.+.||+|||+||++|++...|. |..+.|+.||+
T Consensus 28 ~RllkAi~~lG~e----kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 28 SRLLKAITKLGWE----KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred HHHHHHHHHhCcC----CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 4445555555554 79999999999999999 999999999999999999976653 34589999999
Q ss_pred HHHHHHHHHHHHHhhhcC--CeEEEecCCCCHHHHHhh--cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEec
Q psy2371 132 YLAKRDAEWMSVLYNWLG--LSIGVNSSEISHSLKKKS--YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILD 207 (816)
Q Consensus 132 yLA~Rd~e~~~~l~~~lg--lsv~~i~~~~~~~~r~~~--y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvD 207 (816)
|||+|.+..+..+..+++ +++.-+.+.|+....+.+ -.+||++||||++ .+|+ +... ......+.|+|||
T Consensus 104 EL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~l-l~~~----~~~~-~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 104 ELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKL-LRHL----AAGV-LEYLDSLSFLVVD 177 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHH-HHHH----hhcc-chhhhheeeEEec
Confidence 999999999999999886 677767777775544433 3689999999997 3333 2221 2456789999999
Q ss_pred chhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHH
Q psy2371 208 EIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKY 287 (816)
Q Consensus 208 EaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~ 287 (816)
|||=+|.=. |.+.+..+...||+ .-+.+++|++-.+.+
T Consensus 178 EADLllsfG-----------------Yeedlk~l~~~LPr-------------------------~~Q~~LmSATl~dDv 215 (569)
T KOG0346|consen 178 EADLLLSFG-----------------YEEDLKKLRSHLPR-------------------------IYQCFLMSATLSDDV 215 (569)
T ss_pred hhhhhhhcc-----------------cHHHHHHHHHhCCc-------------------------hhhheeehhhhhhHH
Confidence 999998322 77889999999986 245677788776665
Q ss_pred HHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhc
Q psy2371 288 ENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYK 367 (816)
Q Consensus 288 e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~ 367 (816)
..+ + .++- .+.|++ +++.++..
T Consensus 216 ~~L------K--kL~l--------~nPviL----------------------------kl~e~el~-------------- 237 (569)
T KOG0346|consen 216 QAL------K--KLFL--------HNPVIL----------------------------KLTEGELP-------------- 237 (569)
T ss_pred HHH------H--HHhc--------cCCeEE----------------------------EeccccCC--------------
Confidence 443 1 1221 111111 11111000
Q ss_pred chhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHH
Q psy2371 368 KISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELL 447 (816)
Q Consensus 368 ~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~L 447 (816)
.|. .-.+.+|..++.+|+.-+...++-..=.|+ .|||+||++.+=.|
T Consensus 238 --------------------------~~d------qL~Qy~v~cse~DKflllyallKL~LI~gK-sliFVNtIdr~YrL 284 (569)
T KOG0346|consen 238 --------------------------NPD------QLTQYQVKCSEEDKFLLLYALLKLRLIRGK-SLIFVNTIDRCYRL 284 (569)
T ss_pred --------------------------Ccc------cceEEEEEeccchhHHHHHHHHHHHHhcCc-eEEEEechhhhHHH
Confidence 000 001224556677888655554442223554 89999999999999
Q ss_pred HHHHHhCCCCeEEEcCCchHHHH-HHHHH-cCCCccEEEecCccccCccccCCCCchhhHHHhhh-cchhhHHHHH-HHH
Q psy2371 448 SNILKKNNLPHSVLNAKQHKLEA-QIIAQ-AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKK-NISSEVKKKN-KIK 523 (816)
Q Consensus 448 s~~L~~~gi~~~vLnak~~~rEa-~ii~~-Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~-~~~~~~~~~~-~~~ 523 (816)
--.|.+.||+..+||+....+-+ .|+.| --+...++||||-..-|--+. ++.+. +...+++.+. ...
T Consensus 285 kLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e---------ee~kgk~~e~~~kndkkskk 355 (569)
T KOG0346|consen 285 KLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE---------EEVKGKSDEKNPKNDKKSKK 355 (569)
T ss_pred HHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh---------ccccccccccCCCCcccccc
Confidence 99999999999999998544433 45554 222458999999552222111 00000 0000000000 000
Q ss_pred HHHHHH--H--hhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHH
Q psy2371 524 KLKNEW--M--LLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVME 596 (816)
Q Consensus 524 ~~~~~~--~--~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~ 596 (816)
+.-.+. . -+-..|. .|||+|+|++...|+||+|||||+|+||++..|+++.+. ||.+.+...+.
T Consensus 356 K~D~E~GVsRGIDF~~V~-----~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~----~g~~~le~~~~ 423 (569)
T KOG0346|consen 356 KLDKESGVSRGIDFHHVS-----NVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEE----FGKESLESILK 423 (569)
T ss_pred ccCchhchhccccchhee-----eeeecCCCCchHHHHHhccccccCCCCCceEEEecchHH----hhhhHHHHHHh
Confidence 000000 0 0002343 899999999999999999999999999999999998764 45566655443
No 48
>KOG0332|consensus
Probab=100.00 E-value=3.4e-35 Score=313.63 Aligned_cols=333 Identities=18% Similarity=0.202 Sum_probs=250.9
Q ss_pred hhHHHHHHHHHHHHHHhcc-ccchhhhhhhcccc----CCceeeecCCCCchHHHHHHHHHHH---hcCCcEEEEeCcHH
Q psy2371 61 ILPKAFSVCREASKRVLKM-RHFDVQLIGGIALH----YGNISEMQTGEGKTLVATLAAYLNS---LSGQGVHIVTISDY 132 (816)
Q Consensus 61 ~l~ea~a~vrea~~R~lg~-~p~~VQ~~~~~~L~----~G~Iaem~TGEGKTL~~~Lpa~l~a---L~g~~V~VvT~n~y 132 (816)
|-||.+.-+.- +|+ +|+.+|..+.|.|+ ++-|||++.|+|||.+|+|.++-.. +.-.++.+++||++
T Consensus 97 LkPellkgly~-----M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrE 171 (477)
T KOG0332|consen 97 LKPELLKGLYA-----MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRE 171 (477)
T ss_pred CCHHHHhHHHH-----hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHH
Confidence 46887776632 454 89999999999875 3459999999999999999998654 34568999999999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 133 LAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 133 LA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
||.|.-+.+....+|.++++..+..+. ...|-.....+|++||||-+ .||++-. .-+......++++||||+|
T Consensus 172 LA~Q~~eVv~eMGKf~~ita~yair~s-k~~rG~~i~eqIviGTPGtv-~Dlm~kl-----k~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 172 LAPQTGEVVEEMGKFTELTASYAIRGS-KAKRGNKLTEQIVIGTPGTV-LDLMLKL-----KCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred HHHHHHHHHHHhcCceeeeEEEEecCc-ccccCCcchhheeeCCCccH-HHHHHHH-----HhhChhhceEEEecchhhh
Confidence 999999999999999999999988775 12222223578999999998 5665532 2345678999999999999
Q ss_pred hhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH
Q psy2371 213 LIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI 292 (816)
Q Consensus 213 LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~ 292 (816)
+-..+ |.+..-+|.+.+++ ..+-++||++..+++.++.
T Consensus 245 i~tqG----------------~~D~S~rI~~~lP~-------------------------~~QllLFSATf~e~V~~Fa- 282 (477)
T KOG0332|consen 245 IDTQG----------------FQDQSIRIMRSLPR-------------------------NQQLLLFSATFVEKVAAFA- 282 (477)
T ss_pred hhccc----------------ccccchhhhhhcCC-------------------------cceEEeeechhHHHHHHHH-
Confidence 93322 33344455566653 2455678999888877764
Q ss_pred HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcc
Q psy2371 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGM 372 (816)
Q Consensus 293 ~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~Gm 372 (816)
.. +|.|-.+ +.++.+..++.+|-
T Consensus 283 ------~k--------ivpn~n~-----------------------------i~Lk~eel~L~~Ik-------------- 305 (477)
T KOG0332|consen 283 ------LK--------IVPNANV-----------------------------IILKREELALDNIK-------------- 305 (477)
T ss_pred ------HH--------hcCCCce-----------------------------eeeehhhccccchh--------------
Confidence 11 2233222 22333444444442
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
+.| +.+..+++|+++|++ +.....-|| .+|||.++..+.+|+..|.
T Consensus 306 ------------Qly--------------------v~C~~~~~K~~~l~~-lyg~~tigq-siIFc~tk~ta~~l~~~m~ 351 (477)
T KOG0332|consen 306 ------------QLY--------------------VLCACRDDKYQALVN-LYGLLTIGQ-SIIFCHTKATAMWLYEEMR 351 (477)
T ss_pred ------------hhe--------------------eeccchhhHHHHHHH-HHhhhhhhh-eEEEEeehhhHHHHHHHHH
Confidence 111 345678899999998 555666777 5799999999999999999
Q ss_pred hCCCCeEEEcCCch--HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHH
Q psy2371 453 KNNLPHSVLNAKQH--KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWM 530 (816)
Q Consensus 453 ~~gi~~~vLnak~~--~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (816)
..|..+.+|||... +|.+-|..+.-+...|+|+||+.+||+|+
T Consensus 352 ~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv----------------------------------- 396 (477)
T KOG0332|consen 352 AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV----------------------------------- 396 (477)
T ss_pred hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc-----------------------------------
Confidence 99999999999954 44444544555556899999999999999
Q ss_pred hhhhhhhccCceEEEEecCC------CCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 531 LLHDKVISSGGLHIIGTERH------ESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 531 ~~~~~V~~~GGLhVI~te~p------es~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+.|. .|||||+| .+...|.||+|||||.|+.|.+..||.-++.
T Consensus 397 ---~qVs-----~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 397 ---AQVS-----VVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred ---ceEE-----EEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 5676 99999999 4678999999999999999999998866653
No 49
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-34 Score=323.94 Aligned_cols=319 Identities=18% Similarity=0.215 Sum_probs=229.4
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.|+ .|+|+|..+++.+.+|+ |+.++||+|||++|.+|++.... .+..++|++|+++||.|..+.+..+...+++
T Consensus 46 ~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 455 69999999999999988 99999999999999999986533 3567999999999999999999999999999
Q ss_pred eEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccc
Q psy2371 151 SIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIK 228 (816)
Q Consensus 151 sv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~ 228 (816)
.+....|+...... ...-+++|++|||+++ ++.++.. ......++++||||||.++ +..
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~~i~lvViDEah~~~-~~~----------- 186 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKLKAGVHMVVGTPGRV-YDMIDKR------HLRVDDLKLFILDEADEML-SRG----------- 186 (401)
T ss_pred eEEEEECCcCHHHHHHHHcCCCCEEEECcHHH-HHHHHhC------CcccccccEEEEecHHHHH-hcc-----------
Confidence 99988888764332 2223579999999998 5555432 2346789999999999988 322
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcce
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
|...+..++..++. ..+.+.+|++-...+..+. . .++.....
T Consensus 187 -----~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~------~-~~~~~~~~- 228 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPP-------------------------DVQVALFSATMPNEILELT------T-KFMRDPKR- 228 (401)
T ss_pred -----hHHHHHHHHhhCCC-------------------------CcEEEEEEecCCHHHHHHH------H-HHcCCCEE-
Confidence 22245555555543 2456777877554443332 1 11110000
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
+.+.... .+ + .+
T Consensus 229 ------------------------------------~~~~~~~-----~~----------~-----------------~~ 240 (401)
T PTZ00424 229 ------------------------------------ILVKKDE-----LT----------L-----------------EG 240 (401)
T ss_pred ------------------------------------EEeCCCC-----cc----------c-----------------CC
Confidence 0000000 00 0 00
Q ss_pred CeEEEcCCCCccccccCcCeEecC-hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKT-MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t-~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
+.. ..+... ...+...+...+... ...++||||+|++.++.++..|...|+.+..+||+...
T Consensus 241 ~~~---------------~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~ 303 (401)
T PTZ00424 241 IRQ---------------FYVAVEKEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQ 303 (401)
T ss_pred ceE---------------EEEecChHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCH
Confidence 000 011111 233555555544332 34569999999999999999999999999999999766
Q ss_pred HHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEE
Q psy2371 468 LEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHII 545 (816)
Q Consensus 468 rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI 545 (816)
.++..+.++++.| .|+|||++++||+|| |+|. +||
T Consensus 304 ~~R~~i~~~f~~g~~~vLvaT~~l~~GiDi--------------------------------------p~v~-----~VI 340 (401)
T PTZ00424 304 KDRDLIMREFRSGSTRVLITTDLLARGIDV--------------------------------------QQVS-----LVI 340 (401)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccccCCcCc--------------------------------------ccCC-----EEE
Confidence 6665555444444 799999999999999 5676 999
Q ss_pred EecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 546 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 546 ~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
+++.|.|...|.||+||+||.|.+|.+..|++.+|
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999998766
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-34 Score=347.64 Aligned_cols=336 Identities=15% Similarity=0.104 Sum_probs=221.1
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC--CcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG--QGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
.|+ +||++|..+++.+++|+ |+.++||+|||++|.||++...+.+ ..+++++||++||.|..+.+..+. ..|++
T Consensus 32 ~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~ 110 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVR 110 (742)
T ss_pred cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeE
Confidence 566 69999999999999998 9999999999999999999665543 469999999999999999998886 56899
Q ss_pred EEEecCCCCHHHHHhh-cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccc
Q psy2371 152 IGVNSSEISHSLKKKS-YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNN 230 (816)
Q Consensus 152 v~~i~~~~~~~~r~~~-y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~ 230 (816)
++...|+.+.++|+.. -+++|+++||+.+-...|.++.. -...+++++++||||||.++ +..
T Consensus 111 v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~---~~~~l~~l~~vViDEah~~~-g~f------------- 173 (742)
T TIGR03817 111 PATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHAR---WARFLRRLRYVVIDECHSYR-GVF------------- 173 (742)
T ss_pred EEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhH---HHHHHhcCCEEEEeChhhcc-Ccc-------------
Confidence 9998888886665433 36899999997764333332211 11235789999999999986 432
Q ss_pred hhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEE
Q psy2371 231 AQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYII 310 (816)
Q Consensus 231 ~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV 310 (816)
...+..++..|..-- .+| ..+.+.+.+|++.....+ . +..++.++
T Consensus 174 ----g~~~~~il~rL~ri~----------------~~~--g~~~q~i~~SATi~n~~~-~-------~~~l~g~~----- 218 (742)
T TIGR03817 174 ----GSHVALVLRRLRRLC----------------ARY--GASPVFVLASATTADPAA-A-------ASRLIGAP----- 218 (742)
T ss_pred ----HHHHHHHHHHHHHHH----------------Hhc--CCCCEEEEEecCCCCHHH-H-------HHHHcCCC-----
Confidence 113333333332100 000 002345666776443221 1 11222110
Q ss_pred eCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCe
Q psy2371 311 KNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLE 390 (816)
Q Consensus 311 ~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~ 390 (816)
+.+||. .+.... ...
T Consensus 219 ----~~~i~~----------------------------------------------------~~~~~~---------~~~ 233 (742)
T TIGR03817 219 ----VVAVTE----------------------------------------------------DGSPRG---------ART 233 (742)
T ss_pred ----eEEECC----------------------------------------------------CCCCcC---------ceE
Confidence 000000 000000 011
Q ss_pred E-EEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC--------CCCeEEE
Q psy2371 391 T-ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN--------NLPHSVL 461 (816)
Q Consensus 391 v-v~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~--------gi~~~vL 461 (816)
+ +..|+............-.....++...+...+. .+.++||||+|+..+|.++..|++. +.++..+
T Consensus 234 ~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~ 309 (742)
T TIGR03817 234 VALWEPPLTELTGENGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAY 309 (742)
T ss_pred EEEecCCccccccccccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhe
Confidence 1 1122210000000000000112244444444332 4678999999999999999998764 6678899
Q ss_pred cCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 462 NAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 462 nak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
||...+.|+..+.++++.| .|+||||.++||+|| ++|.
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI--------------------------------------~~vd-- 349 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDI--------------------------------------SGLD-- 349 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCc--------------------------------------cccc--
Confidence 9997766666666655555 689999999999999 4565
Q ss_pred CceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEec
Q psy2371 540 GGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 577 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~ls 577 (816)
+||+++.|.+...|.||+|||||.|..|.+.++++
T Consensus 350 ---~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 350 ---AVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred ---EEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 99999999999999999999999999999988875
No 51
>KOG0327|consensus
Probab=100.00 E-value=4.3e-34 Score=307.65 Aligned_cols=315 Identities=17% Similarity=0.212 Sum_probs=247.0
Q ss_pred ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHH---hcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 80 RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNS---LSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~a---L~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
+|+.||..|+++..+|. ++++++|+|||.||++|++... ....+|+++.||++||+|+.+.+.+++..++.+|..
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 79999999999999999 9999999999999999999763 233579999999999999999999999999999998
Q ss_pred ecCCCCH---HHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccch
Q psy2371 155 NSSEISH---SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNA 231 (816)
Q Consensus 155 i~~~~~~---~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~ 231 (816)
.+||.+. .++.+.-.++||+||||++ +|.|.- ..+.++++.+.++||||.||...
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV-~dml~~------~~l~~~~iKmfvlDEaDEmLs~g--------------- 185 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRV-FDMLNR------GSLSTDGIKMFVLDEADEMLSRG--------------- 185 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhH-HHhhcc------ccccccceeEEeecchHhhhccc---------------
Confidence 8888762 2344445689999999998 666532 25667899999999999999665
Q ss_pred hhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEe
Q psy2371 232 QYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIK 311 (816)
Q Consensus 232 ~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~ 311 (816)
|.+.|..+++.+++ +-+.+++|++....+... ++.++++.+-
T Consensus 186 --fkdqI~~if~~lp~-------------------------~vQv~l~SAT~p~~vl~v-------t~~f~~~pv~---- 227 (397)
T KOG0327|consen 186 --FKDQIYDIFQELPS-------------------------DVQVVLLSATMPSDVLEV-------TKKFMREPVR---- 227 (397)
T ss_pred --hHHHHHHHHHHcCc-------------------------chhheeecccCcHHHHHH-------HHHhccCceE----
Confidence 45688899999986 357789999887766554 2344332211
Q ss_pred CCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeE
Q psy2371 312 NNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLET 391 (816)
Q Consensus 312 d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~v 391 (816)
+.++.+..|+.-|.. +
T Consensus 228 ---------------------------------i~vkk~~ltl~gikq--------------------------~----- 243 (397)
T KOG0327|consen 228 ---------------------------------ILVKKDELTLEGIKQ--------------------------F----- 243 (397)
T ss_pred ---------------------------------EEecchhhhhhheee--------------------------e-----
Confidence 111222233333321 1
Q ss_pred EEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHH
Q psy2371 392 ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLE 469 (816)
Q Consensus 392 v~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rE 469 (816)
.+...+++|+..++....+ . +..+|||++.+.+..+...|..+|+.+..+|+... +|+
T Consensus 244 ----------------~i~v~k~~k~~~l~dl~~~---~-~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~ 303 (397)
T KOG0327|consen 244 ----------------YINVEKEEKLDTLCDLYRR---V-TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERD 303 (397)
T ss_pred ----------------eeeccccccccHHHHHHHh---h-hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhh
Confidence 1222334488878776652 2 34789999999999999999999999999999854 455
Q ss_pred HHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecC
Q psy2371 470 AQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTER 549 (816)
Q Consensus 470 a~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~ 549 (816)
.....+..+.++|+|.|++++||+||. .+. .||||++
T Consensus 304 ~~~~ef~~gssrvlIttdl~argidv~--------------------------------------~~s-----lvinydl 340 (397)
T KOG0327|consen 304 TLMREFRSGSSRVLITTDLLARGIDVQ--------------------------------------QVS-----LVVNYDL 340 (397)
T ss_pred HHHHHhhcCCceEEeeccccccccchh--------------------------------------hcc-----eeeeecc
Confidence 555556666779999999999999994 454 8999999
Q ss_pred CCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 550 HESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 550 pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|..+..|.||+|||||.|.+|.++.|+.-+|.
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 99999999999999999999999999988774
No 52
>KOG0337|consensus
Probab=100.00 E-value=9.4e-34 Score=306.33 Aligned_cols=333 Identities=16% Similarity=0.114 Sum_probs=259.4
Q ss_pred hhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc----CCcEEEEeCcHHHH
Q psy2371 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS----GQGVHIVTISDYLA 134 (816)
Q Consensus 61 ~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~----g~~V~VvT~n~yLA 134 (816)
|-+..|..+.+-+++ .|+|+|...+|.+++|+ ++-+.||+|||++|+||++..... |-..+|+.||++||
T Consensus 28 L~~~v~raI~kkg~~----~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa 103 (529)
T KOG0337|consen 28 LDYKVLRAIHKKGFN----TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELA 103 (529)
T ss_pred CCHHHHHHHHHhhcC----CCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHH
Confidence 345566667666666 49999999999999999 889999999999999999964332 34689999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc--CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 135 KRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY--EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 135 ~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y--~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
.|.......+.++.++.+.+++||-+.+++-... ++||+++|||++ .. +... -.+.++.+.|+|.||||++
T Consensus 104 ~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~-----~h-~~ve-m~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 104 LQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRL-----LH-LGVE-MTLTLSSVEYVVFDEADRL 176 (529)
T ss_pred HHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCcee-----ee-eehh-eeccccceeeeeehhhhHH
Confidence 9999999999999999999999998877766554 799999999997 22 2111 1366789999999999999
Q ss_pred hhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH
Q psy2371 213 LIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI 292 (816)
Q Consensus 213 LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~ 292 (816)
+ .++ |.++..+++..++. ..++++||+++...+-.+.
T Consensus 177 f-emg----------------fqeql~e~l~rl~~-------------------------~~QTllfSatlp~~lv~fa- 213 (529)
T KOG0337|consen 177 F-EMG----------------FQEQLHEILSRLPE-------------------------SRQTLLFSATLPRDLVDFA- 213 (529)
T ss_pred H-hhh----------------hHHHHHHHHHhCCC-------------------------cceEEEEeccCchhhHHHH-
Confidence 9 554 66688999999985 3678899999876544432
Q ss_pred HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcc
Q psy2371 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGM 372 (816)
Q Consensus 293 ~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~Gm 372 (816)
+.-+.. +-.|.+.-|+...... |.
T Consensus 214 ------kaGl~~-------------------------------------p~lVRldvetkise~l--k~----------- 237 (529)
T KOG0337|consen 214 ------KAGLVP-------------------------------------PVLVRLDVETKISELL--KV----------- 237 (529)
T ss_pred ------HccCCC-------------------------------------CceEEeehhhhcchhh--hh-----------
Confidence 111110 0011111122111110 10
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
-..+.-..+|..+++..+..... ....+||+.+...+|.+...|.
T Consensus 238 ----------------------------------~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~ 282 (529)
T KOG0337|consen 238 ----------------------------------RFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLR 282 (529)
T ss_pred ----------------------------------heeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHH
Confidence 01223457888888887765543 3458999999999999999999
Q ss_pred hCCCCeEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHH
Q psy2371 453 KNNLPHSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWM 530 (816)
Q Consensus 453 ~~gi~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (816)
..|+.+..+-+. ++.|-..+-.+.++++.++|.||+|+||+||++.
T Consensus 283 ~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipll-------------------------------- 330 (529)
T KOG0337|consen 283 DFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLL-------------------------------- 330 (529)
T ss_pred hcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccc--------------------------------
Confidence 999999888776 5677778888899999999999999999999765
Q ss_pred hhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 531 LLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 531 ~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
--|||++.|.+.+++.||+||++|+|+.|.+..+|..+|+
T Consensus 331 -----------dnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 331 -----------DNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred -----------cccccccCCCCCceEEEEecchhhccccceEEEEEecccc
Confidence 2699999999999999999999999999999999988774
No 53
>KOG0350|consensus
Probab=100.00 E-value=2e-33 Score=308.71 Aligned_cols=353 Identities=19% Similarity=0.234 Sum_probs=222.2
Q ss_pred ccchhhhhhhcccc----------CCc-eeeecCCCCchHHHHHHHHHHHhcCC-----cEEEEeCcHHHHHHHHHHHHH
Q psy2371 80 RHFDVQLIGGIALH----------YGN-ISEMQTGEGKTLVATLAAYLNSLSGQ-----GVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~----------~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~-----~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+-||||...+|.++ -|. .+-++||+||||+|++|++ ++|..+ ++.||.||++||.|.+..+..
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV-Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV-QLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH-HHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 67999977766552 233 6789999999999999999 577766 479999999999999999999
Q ss_pred HhhhcCCeEEEecCCCC--HHHHHhhc-----CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 144 LYNWLGLSIGVNSSEIS--HSLKKKSY-----EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 144 l~~~lglsv~~i~~~~~--~~~r~~~y-----~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
+....||.|+...|..+ .+.++.+- ..||+++||||| .|+|+. .....+..++|+||||||+|| |.
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL-VDHl~~-----~k~f~Lk~LrfLVIDEADRll-~q 310 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL-VDHLNN-----TKSFDLKHLRFLVIDEADRLL-DQ 310 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH-HHhccC-----CCCcchhhceEEEechHHHHH-HH
Confidence 99999999988887655 44555543 239999999998 566543 235677899999999999999 65
Q ss_pred cCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHH
Q psy2371 217 ARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMAL 296 (816)
Q Consensus 217 a~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al 296 (816)
. |..+++.+...+.. .+.+.+....+......- ..++
T Consensus 311 s----------------fQ~Wl~~v~~~~~~--------------------------~k~~~~~~nii~~~~~~~-pt~~ 347 (620)
T KOG0350|consen 311 S----------------FQEWLDTVMSLCKT--------------------------MKRVACLDNIIRQRQAPQ-PTVL 347 (620)
T ss_pred H----------------HHHHHHHHHHHhCC--------------------------chhhcChhhhhhhcccCC-chhh
Confidence 4 55566655555432 001111000000000000 0000
Q ss_pred HHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhc--ccc
Q psy2371 297 RAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISG--MTG 374 (816)
Q Consensus 297 ~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~G--mTG 374 (816)
.+ -.|+ +.+.|+.+.- .|.
T Consensus 348 ~e---------------------~~t~--------------------------------------~~~~~~~l~kL~~sa 368 (620)
T KOG0350|consen 348 SE---------------------LLTK--------------------------------------LGKLYPPLWKLVFSA 368 (620)
T ss_pred HH---------------------HHhh--------------------------------------cCCcCchhHhhhcch
Confidence 00 0000 0111221111 122
Q ss_pred cccchHHHHHH----------Hhc--CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccH
Q psy2371 375 TAETEAYEFQE----------IYK--LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIE 442 (816)
Q Consensus 375 Ta~te~~e~~~----------~Y~--l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~ 442 (816)
|..-...-+.+ +|+ .....+|+.-.. -.+......|--++...|... ++-.+|+|++|.+
T Consensus 369 tLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~------~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 369 TLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSH------RLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVS 440 (620)
T ss_pred hhhcChHHHhhhhcCCCceEEeecccceeeecChhhhh------ceeecccccchHhHHHHHHHh--hcceEEEEecchH
Confidence 22111111111 111 112334432211 112222234555666666543 4566999999999
Q ss_pred hHHHHHHHHH-h---CCCCeEEEcCCchH--HHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhH
Q psy2371 443 NSELLSNILK-K---NNLPHSVLNAKQHK--LEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEV 516 (816)
Q Consensus 443 ~se~Ls~~L~-~---~gi~~~vLnak~~~--rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~ 516 (816)
.+..|+..|+ . .++...-+.|.... |-..+-++|...-+|+||||..+||+|+.
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~-------------------- 500 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVN-------------------- 500 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccc--------------------
Confidence 9999999998 2 23444334444222 23334445555568999999999999994
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHH
Q psy2371 517 KKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVME 596 (816)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~ 596 (816)
+|. .|||||.|.+.+.|+||+|||||+|+.|++...++-++. +. ..++++
T Consensus 501 ------------------~v~-----~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~--r~-----F~klL~ 550 (620)
T KOG0350|consen 501 ------------------DVD-----NVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK--RL-----FSKLLK 550 (620)
T ss_pred ------------------ccc-----eEeecCCCchhhHHHHhhcccccccCCceEEEeeccccc--hH-----HHHHHH
Confidence 454 899999999999999999999999999999999877662 33 345555
Q ss_pred HcCC
Q psy2371 597 KLKI 600 (816)
Q Consensus 597 ~~~~ 600 (816)
+.+.
T Consensus 551 ~~~~ 554 (620)
T KOG0350|consen 551 KTNL 554 (620)
T ss_pred Hhcc
Confidence 5543
No 54
>KOG4284|consensus
Probab=100.00 E-value=6.2e-34 Score=318.69 Aligned_cols=342 Identities=20% Similarity=0.200 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHH--Hhc-cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHH
Q psy2371 63 PKAFSVCREASKR--VLK-MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLA 134 (816)
Q Consensus 63 ~ea~a~vrea~~R--~lg-~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA 134 (816)
+|-+++-|+...= .-| -+|++||..|+|+...|- |+|++.|+||||+|...++...- ...+..|||||||||
T Consensus 27 fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 27 FEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhh
Confidence 4566666654321 112 269999999999999876 99999999999999998885432 234689999999999
Q ss_pred HHHHHHHHHHhh-hcCCeEEEecCCCCH-HHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 135 KRDAEWMSVLYN-WLGLSIGVNSSEISH-SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 135 ~Rd~e~~~~l~~-~lglsv~~i~~~~~~-~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
.|+.+.+..+.. |-|++|.+.+||.+. ..+.....|+|++|||||+. .|- ..+.+....++++|+||||.+
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~--qL~-----el~~~n~s~vrlfVLDEADkL 179 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIA--QLV-----ELGAMNMSHVRLFVLDEADKL 179 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHH--HHH-----HhcCCCccceeEEEeccHHhh
Confidence 999999999986 569999999999884 45555568999999999983 222 234567789999999999998
Q ss_pred hhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEE-EechhhHHHHHHHH
Q psy2371 213 LIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQV-FLTENGYEKYENIL 291 (816)
Q Consensus 213 LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v-~lt~~g~~~~e~~l 291 (816)
+ |+. .|...|+.|+..||. .||+ .+|++-.+.+...|
T Consensus 180 ~-~t~---------------sfq~~In~ii~slP~--------------------------~rQv~a~SATYp~nLdn~L 217 (980)
T KOG4284|consen 180 M-DTE---------------SFQDDINIIINSLPQ--------------------------IRQVAAFSATYPRNLDNLL 217 (980)
T ss_pred h-chh---------------hHHHHHHHHHHhcch--------------------------hheeeEEeccCchhHHHHH
Confidence 8 543 266799999999986 4554 67888776665554
Q ss_pred HHHHHHHHHHhccCcceEEeC-CeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchh
Q psy2371 292 IKMALRAHVLYHKNKHYIIKN-NKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKIS 370 (816)
Q Consensus 292 ~~~Al~A~~l~~~~~dYiV~d-~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~ 370 (816)
++ +| +|.-.|--+ +.+.++ |+.|++-
T Consensus 218 ------sk-~m-rdp~lVr~n~~d~~L~---------------GikQyv~------------------------------ 244 (980)
T KOG4284|consen 218 ------SK-FM-RDPALVRFNADDVQLF---------------GIKQYVV------------------------------ 244 (980)
T ss_pred ------HH-Hh-cccceeecccCCceee---------------chhheee------------------------------
Confidence 22 22 222111111 011111 3333322
Q ss_pred cccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHH
Q psy2371 371 GMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNI 450 (816)
Q Consensus 371 GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~ 450 (816)
.+|+. ..-....+.|.+.+- ++.....-.| .||||+++..++.++..
T Consensus 245 ----------------------~~~s~---------nnsveemrlklq~L~-~vf~~ipy~Q-AlVF~~~~sra~~~a~~ 291 (980)
T KOG4284|consen 245 ----------------------AKCSP---------NNSVEEMRLKLQKLT-HVFKSIPYVQ-ALVFCDQISRAEPIATH 291 (980)
T ss_pred ----------------------eccCC---------cchHHHHHHHHHHHH-HHHhhCchHH-HHhhhhhhhhhhHHHHH
Confidence 22210 000011234444333 3333333444 69999999999999999
Q ss_pred HHhCCCCeEEEcCCchHHHHHHHHH--cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHH
Q psy2371 451 LKKNNLPHSVLNAKQHKLEAQIIAQ--AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNE 528 (816)
Q Consensus 451 L~~~gi~~~vLnak~~~rEa~ii~~--Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (816)
|+..|+++..+.|-+.+.++-.+-. .....+|+||||+.+||+|-
T Consensus 292 L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa--------------------------------- 338 (980)
T KOG4284|consen 292 LKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDA--------------------------------- 338 (980)
T ss_pred hhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCc---------------------------------
Confidence 9999999999999877666543221 22245899999999999998
Q ss_pred HHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhh
Q psy2371 529 WMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 529 ~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l 582 (816)
|.|. .|||.|.|.+...|-||+|||||.|..|.+++|+.-+..+
T Consensus 339 -----~~vN-----LVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~ 382 (980)
T KOG4284|consen 339 -----DNVN-----LVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDEREL 382 (980)
T ss_pred -----cccc-----eEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhh
Confidence 5676 9999999999999999999999999999999999877653
No 55
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-32 Score=316.45 Aligned_cols=320 Identities=17% Similarity=0.153 Sum_probs=220.0
Q ss_pred HHHhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 74 KRVLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 74 ~R~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
+.++|+ .|+|+|..+++++++|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.+..+.+. .+|+
T Consensus 4 ~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~----~~gi 76 (470)
T TIGR00614 4 KTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK----ASGI 76 (470)
T ss_pred HhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH----HcCC
Confidence 456776 78899999999999998 99999999999999999984 35678999999999987666543 5799
Q ss_pred eEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhh-hhhhhccCCCccccccceEEEecchhhhhhhccCCccee
Q psy2371 151 SIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDY-LRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLII 223 (816)
Q Consensus 151 sv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDy-LrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tplii 223 (816)
++..+.++.+..++... -.++|+|+||+.+.-.. +.+.+. ....+.++||||||.++ +-+.
T Consensus 77 ~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~------~~~~i~~iViDEaH~i~-~~g~----- 144 (470)
T TIGR00614 77 PATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE------ERKGITLIAVDEAHCIS-QWGH----- 144 (470)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH------hcCCcCEEEEeCCcccC-cccc-----
Confidence 99988888776543322 24799999999874221 222221 34678999999999987 3221
Q ss_pred ccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhc
Q psy2371 224 SGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYH 303 (816)
Q Consensus 224 sg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~ 303 (816)
.-...|. .+..+...++ ..+.+.||++....+.+-+ . ..+.
T Consensus 145 -----~fr~~~~-~l~~l~~~~~--------------------------~~~~l~lTAT~~~~~~~di------~-~~l~ 185 (470)
T TIGR00614 145 -----DFRPDYK-ALGSLKQKFP--------------------------NVPIMALTATASPSVREDI------L-RQLN 185 (470)
T ss_pred -----ccHHHHH-HHHHHHHHcC--------------------------CCceEEEecCCCHHHHHHH------H-HHcC
Confidence 0011233 3333333333 1355677777655443322 0 0000
Q ss_pred cCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHH
Q psy2371 304 KNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEF 383 (816)
Q Consensus 304 ~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~ 383 (816)
- .+.
T Consensus 186 l------~~~---------------------------------------------------------------------- 189 (470)
T TIGR00614 186 L------KNP---------------------------------------------------------------------- 189 (470)
T ss_pred C------CCC----------------------------------------------------------------------
Confidence 0 000
Q ss_pred HHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcC
Q psy2371 384 QEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463 (816)
Q Consensus 384 ~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLna 463 (816)
.++....++|..+. .+.......+..+...+.+. ..|+.+||||+|+..++.++..|.+.|+++..+||
T Consensus 190 ------~~~~~s~~r~nl~~----~v~~~~~~~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~ 258 (470)
T TIGR00614 190 ------QIFCTSFDRPNLYY----EVRRKTPKILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHA 258 (470)
T ss_pred ------cEEeCCCCCCCcEE----EEEeCCccHHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeC
Confidence 00000111111100 00000112344455555433 35677899999999999999999999999999999
Q ss_pred CchHHHHHHHHHcC--CCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy2371 464 KQHKLEAQIIAQAG--HPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGG 541 (816)
Q Consensus 464 k~~~rEa~ii~~Ag--~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 541 (816)
+....|+..+.+++ ....|+|||+++|||+|+ |+|.
T Consensus 259 ~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~--------------------------------------p~V~---- 296 (470)
T TIGR00614 259 GLEISARDDVHHKFQRDEIQVVVATVAFGMGINK--------------------------------------PDVR---- 296 (470)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc--------------------------------------ccce----
Confidence 96665555444433 345799999999999999 6777
Q ss_pred eEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 542 LHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 542 LhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+||+++.|.|...|.|++|||||.|.+|.+..|++..|.
T Consensus 297 -~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 297 -FVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred -EEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 999999999999999999999999999999999998873
No 56
>KOG0344|consensus
Probab=100.00 E-value=3.4e-33 Score=313.23 Aligned_cols=321 Identities=19% Similarity=0.144 Sum_probs=241.7
Q ss_pred ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh--------cCCcEEEEeCcHHHHHHHHHHHHHHh--hh
Q psy2371 80 RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL--------SGQGVHIVTISDYLAKRDAEWMSVLY--NW 147 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL--------~g~~V~VvT~n~yLA~Rd~e~~~~l~--~~ 147 (816)
.|+|+|..++|++++++ +|+++||+||||+|.+|++.+.. .|-.+.|+.|+++||.|++.+|.++- .-
T Consensus 158 ~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~ 237 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEG 237 (593)
T ss_pred CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCC
Confidence 79999999999999998 99999999999999999887643 14468999999999999999999987 55
Q ss_pred cCCeEEEecCCCCHHHHHhh---cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceec
Q psy2371 148 LGLSIGVNSSEISHSLKKKS---YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIIS 224 (816)
Q Consensus 148 lglsv~~i~~~~~~~~r~~~---y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliis 224 (816)
.++.+........+.++... -.+||.++||.++ ...+..++-...+++++++|+||+|.++-.+
T Consensus 238 t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri-----~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~-------- 304 (593)
T KOG0344|consen 238 TSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI-----VGLLGLGKLNIDLSKVEWLVVDEADLLFEPE-------- 304 (593)
T ss_pred CchhhhhcccccchhhccchhHHHHHHHHhcCHHHH-----HHHhcCCCccchhheeeeEeechHHhhhChh--------
Confidence 56665544433223222211 1469999999996 3444444445678999999999999988321
Q ss_pred cccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhcc
Q psy2371 225 GEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHK 304 (816)
Q Consensus 225 g~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~ 304 (816)
.|..+.+.|+..+.. +.-+-.+||++....+|+|.. ....
T Consensus 305 --------~f~~Qla~I~sac~s------------------------~~i~~a~FSat~~~~VEE~~~-------~i~~- 344 (593)
T KOG0344|consen 305 --------FFVEQLADIYSACQS------------------------PDIRVALFSATISVYVEEWAE-------LIKS- 344 (593)
T ss_pred --------hHHHHHHHHHHHhcC------------------------cchhhhhhhccccHHHHHHHH-------Hhhc-
Confidence 144488888888753 123445788888888898861 1100
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
+-..++| | +| -+|
T Consensus 345 -------~~~~viv---------g------~~-------------------------------------~sa-------- 357 (593)
T KOG0344|consen 345 -------DLKRVIV---------G------LR-------------------------------------NSA-------- 357 (593)
T ss_pred -------cceeEEE---------e------cc-------------------------------------hhH--------
Confidence 0011111 1 11 111
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHH-HhCCCCeEEEcC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNIL-KKNNLPHSVLNA 463 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L-~~~gi~~~vLna 463 (816)
.-+.|+.++...++..|+-|+.+.+..- -..|+|||+.|.+.+..|...| ...+|.+.++||
T Consensus 358 ---------------~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~ 420 (593)
T KOG0344|consen 358 ---------------NETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHG 420 (593)
T ss_pred ---------------hhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEec
Confidence 1123444556677889999999988765 3479999999999999999999 788999999999
Q ss_pred Cc--hHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy2371 464 KQ--HKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGG 541 (816)
Q Consensus 464 k~--~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 541 (816)
++ .+|+..+-+++-+.-+|+||||+.|||+|++ +|.
T Consensus 421 e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~--------------------------------------gvn---- 458 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFK--------------------------------------GVN---- 458 (593)
T ss_pred ccchhHHHHHHHHHhccCeeEEEehhhhhcccccc--------------------------------------Ccc----
Confidence 95 4555555555444558999999999999995 454
Q ss_pred eEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 542 LHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 542 LhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
.|||||.|.+.-.|+||+|||||+|++|.|++|.+-+|
T Consensus 459 -~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 459 -LVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred -eEEecCCCchhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 99999999999999999999999999999999998877
No 57
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.9e-31 Score=313.03 Aligned_cols=317 Identities=14% Similarity=0.122 Sum_probs=220.7
Q ss_pred HHHHHHHhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 70 REASKRVLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 70 rea~~R~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
.+..+..+|+ .|+|+|..++..+++|+ ++.|+||+|||++|.+|++.. +..++||+|+.+|+.+..+.+.
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~---- 86 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLL---- 86 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHH----
Confidence 3455677898 58899999999999988 999999999999999999853 4468999999999998776554
Q ss_pred hcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCc
Q psy2371 147 WLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTP 220 (816)
Q Consensus 147 ~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tp 220 (816)
.+|+.+.++.++.+.+++... -..+|+|+||+++..+.+.+.+ ...++.++||||||.++ +-+..
T Consensus 87 ~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l-------~~~~l~~iVIDEaH~i~-~~G~~- 157 (607)
T PRK11057 87 ANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHL-------AHWNPALLAVDEAHCIS-QWGHD- 157 (607)
T ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHH-------hhCCCCEEEEeCccccc-cccCc-
Confidence 469999998888776544322 2468999999998543333332 23468999999999987 32210
Q ss_pred ceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHH
Q psy2371 221 LIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHV 300 (816)
Q Consensus 221 liisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~ 300 (816)
-...|. .+..+...++. .+.+.||++.......-+
T Consensus 158 ---------fr~~y~-~L~~l~~~~p~--------------------------~~~v~lTAT~~~~~~~di--------- 192 (607)
T PRK11057 158 ---------FRPEYA-ALGQLRQRFPT--------------------------LPFMALTATADDTTRQDI--------- 192 (607)
T ss_pred ---------ccHHHH-HHHHHHHhCCC--------------------------CcEEEEecCCChhHHHHH---------
Confidence 011233 33333333321 344566666544332211
Q ss_pred HhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchH
Q psy2371 301 LYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEA 380 (816)
Q Consensus 301 l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~ 380 (816)
T Consensus 193 -------------------------------------------------------------------------------- 192 (607)
T PRK11057 193 -------------------------------------------------------------------------------- 192 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCe--EEEc-CCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCC
Q psy2371 381 YEFQEIYKLE--TITV-PPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLP 457 (816)
Q Consensus 381 ~e~~~~Y~l~--vv~I-Pt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~ 457 (816)
.+.+++. ++.+ +.++|..+. .......+...++..+.. ..+.++||||+|++.++.++..|.+.|++
T Consensus 193 ---~~~l~l~~~~~~~~~~~r~nl~~-----~v~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~ 262 (607)
T PRK11057 193 ---VRLLGLNDPLIQISSFDRPNIRY-----TLVEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGIS 262 (607)
T ss_pred ---HHHhCCCCeEEEECCCCCCccee-----eeeeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCC
Confidence 1111110 0001 011111110 001111233445555543 25778999999999999999999999999
Q ss_pred eEEEcCCchHHHHHHHHHcC--CCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhh
Q psy2371 458 HSVLNAKQHKLEAQIIAQAG--HPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDK 535 (816)
Q Consensus 458 ~~vLnak~~~rEa~ii~~Ag--~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (816)
+..+||+....++..+.+.+ ..-.|+|||+++|||+|| |+
T Consensus 263 v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi--------------------------------------p~ 304 (607)
T PRK11057 263 AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK--------------------------------------PN 304 (607)
T ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC--------------------------------------CC
Confidence 99999996655554444433 345799999999999999 67
Q ss_pred hhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 536 VISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 536 V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|. +||+++.|.|...|.|++|||||.|.+|.+.+|++.+|
T Consensus 305 V~-----~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 305 VR-----FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred cC-----EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 77 99999999999999999999999999999999999988
No 58
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2e-31 Score=321.14 Aligned_cols=328 Identities=16% Similarity=0.094 Sum_probs=224.0
Q ss_pred HHHHHHHHHhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 68 VCREASKRVLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 68 ~vrea~~R~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
-+....++++|+ .++|+|..++++++.|+ |+.|+||+||||+|.||++. .+..++||+|+.+|+.... ..+
T Consensus 447 ~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---~~GiTLVISPLiSLmqDQV---~~L 520 (1195)
T PLN03137 447 KLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQI---MNL 520 (1195)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHH---HHH
Confidence 344567888886 77899999999999998 99999999999999999985 3556999999999997322 222
Q ss_pred hhhcCCeEEEecCCCCHHHHHhh--------cCCCEEEECCCcch-hhhhhhhhccCCCccc-cccceEEEecchhhhhh
Q psy2371 145 YNWLGLSIGVNSSEISHSLKKKS--------YEADITYGTNNEFG-FDYLRDNMVFNSNDRV-QRKLNFVILDEIDSILI 214 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r~~~--------y~~dI~ygT~~~l~-fDyLrD~~~~~~~~~~-~r~~~~~IvDEaDs~Li 214 (816)
. .+|+++..+.++++..++... -.++|+|+||+++. .+.+.+.+. .+. ...+.++||||||.|+
T Consensus 521 ~-~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~----~L~~~~~LslIVIDEAHcVS- 594 (1195)
T PLN03137 521 L-QANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE----NLNSRGLLARFVIDEAHCVS- 594 (1195)
T ss_pred H-hCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH----hhhhccccceeccCcchhhh-
Confidence 2 369999999999885544321 24699999999974 233444431 111 2347899999999998
Q ss_pred hccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHH
Q psy2371 215 DEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKM 294 (816)
Q Consensus 215 Dea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~ 294 (816)
+-+.. -...|. .+..+...++ ....+.||++....+.+-+ .
T Consensus 595 qWGhD----------FRpdYr-~L~~Lr~~fp--------------------------~vPilALTATAT~~V~eDI-~- 635 (1195)
T PLN03137 595 QWGHD----------FRPDYQ-GLGILKQKFP--------------------------NIPVLALTATATASVKEDV-V- 635 (1195)
T ss_pred hcccc----------hHHHHH-HHHHHHHhCC--------------------------CCCeEEEEecCCHHHHHHH-H-
Confidence 43210 011233 2222222232 1345667777665554433 0
Q ss_pred HHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccc
Q psy2371 295 ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTG 374 (816)
Q Consensus 295 Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTG 374 (816)
. .+.- .+ .+++. +.|.|
T Consensus 636 ----~-~L~l-~~------~~vfr-----------------------------------------~Sf~R---------- 652 (1195)
T PLN03137 636 ----Q-ALGL-VN------CVVFR-----------------------------------------QSFNR---------- 652 (1195)
T ss_pred ----H-HcCC-CC------cEEee-----------------------------------------cccCc----------
Confidence 0 0100 00 00000 00000
Q ss_pred cccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC
Q psy2371 375 TAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN 454 (816)
Q Consensus 375 Ta~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~ 454 (816)
=|+...++|.. ......+...+...+ .+.+.||||.|+..++.++..|...
T Consensus 653 ------------pNL~y~Vv~k~----------------kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~ 703 (1195)
T PLN03137 653 ------------PNLWYSVVPKT----------------KKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEF 703 (1195)
T ss_pred ------------cceEEEEeccc----------------hhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHC
Confidence 00111222211 112234555554433 3567899999999999999999999
Q ss_pred CCCeEEEcCCchHHHHHHHHHcCCC--ccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhh
Q psy2371 455 NLPHSVLNAKQHKLEAQIIAQAGHP--KMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532 (816)
Q Consensus 455 gi~~~vLnak~~~rEa~ii~~Ag~~--g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (816)
|+++..+||.....++..+.+++.. ..|+|||+.+|||+|+
T Consensus 704 Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk------------------------------------- 746 (1195)
T PLN03137 704 GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK------------------------------------- 746 (1195)
T ss_pred CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc-------------------------------------
Confidence 9999999999766666655555444 4799999999999999
Q ss_pred hhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 533 ~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|+|. +||++++|.|...|.|++|||||.|.+|.+++|.+..|-
T Consensus 747 -PDVR-----~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 747 -PDVR-----FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred -cCCc-----EEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 6787 999999999999999999999999999999999998874
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=1.3e-30 Score=310.83 Aligned_cols=308 Identities=19% Similarity=0.235 Sum_probs=213.2
Q ss_pred HHHHHhccccchhhhhhhccccCC--------ceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 72 ASKRVLKMRHFDVQLIGGIALHYG--------NISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 72 a~~R~lg~~p~~VQ~~~~~~L~~G--------~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+....+++.|+++|..++..+.+| ++++++||+|||++|++|++.....|.+|.|++||++||.|.++.+..
T Consensus 253 ~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 253 KFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHH
Confidence 344568899999999999988665 399999999999999999998777899999999999999999999999
Q ss_pred HhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 144 LYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 144 l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
++..+|+++++++|+++..+|+... .+||++|||+.+ .+. ...+.+.++||||+|.+-.+.
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------v~~~~l~lvVIDE~Hrfg~~q- 399 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDD-------VEFHNLGLVIIDEQHRFGVEQ- 399 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----ccc-------chhcccceEEEechhhhhHHH-
Confidence 9999999999999999866554322 489999999876 222 234689999999999864211
Q ss_pred CCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHH
Q psy2371 218 RTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALR 297 (816)
Q Consensus 218 ~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~ 297 (816)
+. .+ ..... ..+.+.||+|.+..... +
T Consensus 400 ----------------r~-~l----~~~~~-------------------------~~~iL~~SATp~prtl~------~- 426 (681)
T PRK10917 400 ----------------RL-AL----REKGE-------------------------NPHVLVMTATPIPRTLA------M- 426 (681)
T ss_pred ----------------HH-HH----HhcCC-------------------------CCCEEEEeCCCCHHHHH------H-
Confidence 11 11 11110 13456777775433211 1
Q ss_pred HHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhccccccc
Q psy2371 298 AHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAE 377 (816)
Q Consensus 298 A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~ 377 (816)
..+ .+.+ +.++|+
T Consensus 427 --~~~-g~~~-------~s~i~~--------------------------------------------------------- 439 (681)
T PRK10917 427 --TAY-GDLD-------VSVIDE--------------------------------------------------------- 439 (681)
T ss_pred --HHc-CCCc-------eEEEec---------------------------------------------------------
Confidence 111 0111 111111
Q ss_pred chHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhH--------HHHHH
Q psy2371 378 TEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENS--------ELLSN 449 (816)
Q Consensus 378 te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~s--------e~Ls~ 449 (816)
.|..++.. ...+ . ..++...+++.+.+....|+.++|||+.++.+ +.+++
T Consensus 440 ----------------~p~~r~~i----~~~~-~-~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~ 497 (681)
T PRK10917 440 ----------------LPPGRKPI----TTVV-I-PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYE 497 (681)
T ss_pred ----------------CCCCCCCc----EEEE-e-CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHH
Confidence 12111100 0001 1 11122234444444446788999999976554 45677
Q ss_pred HHHhC--CCCeEEEcCCchHHHHHHHHH--cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHH
Q psy2371 450 ILKKN--NLPHSVLNAKQHKLEAQIIAQ--AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKL 525 (816)
Q Consensus 450 ~L~~~--gi~~~vLnak~~~rEa~ii~~--Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (816)
.|.+. ++++..+||+....|++.+.+ +.+...|+|||++++||+||
T Consensus 498 ~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi------------------------------ 547 (681)
T PRK10917 498 ELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV------------------------------ 547 (681)
T ss_pred HHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc------------------------------
Confidence 78765 578999999965555544444 43344799999999999999
Q ss_pred HHHHHhhhhhhhccCceEEEEecCCCC-cchhhhhcCccCCCCCCceEEEEec
Q psy2371 526 KNEWMLLHDKVISSGGLHIIGTERHES-RRIDNQLRGRSGRQGDPGSSRFYLS 577 (816)
Q Consensus 526 ~~~~~~~~~~V~~~GGLhVI~te~pes-~rid~Q~~GRtGRqGdpG~s~~~ls 577 (816)
|+|. +||+++.|.. ...+.||+||+||.|.+|.+.++.+
T Consensus 548 --------p~v~-----~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 548 --------PNAT-----VMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred --------CCCc-----EEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 5665 8999998763 4667789999999999999999885
No 60
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=5.4e-30 Score=311.44 Aligned_cols=309 Identities=19% Similarity=0.193 Sum_probs=216.1
Q ss_pred HHHHhccccchhhhhhhccccCC--------ceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 73 SKRVLKMRHFDVQLIGGIALHYG--------NISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 73 ~~R~lg~~p~~VQ~~~~~~L~~G--------~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
..+.+|+.|+|+|..|+..+.++ ++++++||+|||++|++|++..+..|++|.|++||++||.|.++.+..+
T Consensus 444 ~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 444 FEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 34567999999999999988664 3999999999999999999977778999999999999999999999999
Q ss_pred hhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 145 YNWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
+..++++++++.++.+..+++.. -.+||++|||. + |.. ....+++.++||||+|++-.+
T Consensus 524 ~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-l----l~~-------~v~f~~L~llVIDEahrfgv~--- 588 (926)
T TIGR00580 524 FANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-L----LQK-------DVKFKDLGLLIIDEEQRFGVK--- 588 (926)
T ss_pred hccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-H----hhC-------CCCcccCCEEEeecccccchh---
Confidence 99999999999988875443321 25899999993 2 222 234578999999999995311
Q ss_pred CcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHH
Q psy2371 219 TPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRA 298 (816)
Q Consensus 219 tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A 298 (816)
....+..++. ..+.+.||+|.+.+.-... +
T Consensus 589 -------------------~~~~L~~~~~-------------------------~~~vL~~SATpiprtl~~~----l-- 618 (926)
T TIGR00580 589 -------------------QKEKLKELRT-------------------------SVDVLTLSATPIPRTLHMS----M-- 618 (926)
T ss_pred -------------------HHHHHHhcCC-------------------------CCCEEEEecCCCHHHHHHH----H--
Confidence 1122233322 2356678888654321110 0
Q ss_pred HHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccc
Q psy2371 299 HVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAET 378 (816)
Q Consensus 299 ~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~t 378 (816)
.. .+ ++
T Consensus 619 -~g-~~---------d~--------------------------------------------------------------- 624 (926)
T TIGR00580 619 -SG-IR---------DL--------------------------------------------------------------- 624 (926)
T ss_pred -hc-CC---------Cc---------------------------------------------------------------
Confidence 00 00 00
Q ss_pred hHHHHHHHhcCeEEEcCCCCccccccCcCeEe-cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC--C
Q psy2371 379 EAYEFQEIYKLETITVPPNKINKRKDLQDKIY-KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN--N 455 (816)
Q Consensus 379 e~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~-~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~--g 455 (816)
.++..|+.. |..-...+. .+...-..++.+++ ..|..|+|||++++.++.+++.|++. +
T Consensus 625 -----------s~I~~~p~~---R~~V~t~v~~~~~~~i~~~i~~el----~~g~qv~if~n~i~~~e~l~~~L~~~~p~ 686 (926)
T TIGR00580 625 -----------SIIATPPED---RLPVRTFVMEYDPELVREAIRREL----LRGGQVFYVHNRIESIEKLATQLRELVPE 686 (926)
T ss_pred -----------EEEecCCCC---ccceEEEEEecCHHHHHHHHHHHH----HcCCeEEEEECCcHHHHHHHHHHHHhCCC
Confidence 111111110 000000000 11111123344443 34667999999999999999999985 7
Q ss_pred CCeEEEcCCchHHHH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhh
Q psy2371 456 LPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLH 533 (816)
Q Consensus 456 i~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (816)
+++.++||+..+.|+ .+-++..++..|+|||++++||+||
T Consensus 687 ~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI-------------------------------------- 728 (926)
T TIGR00580 687 ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI-------------------------------------- 728 (926)
T ss_pred CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc--------------------------------------
Confidence 899999999655444 4444554456899999999999999
Q ss_pred hhhhccCceEEEEecCCC-CcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 534 DKVISSGGLHIIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 534 ~~V~~~GGLhVI~te~pe-s~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|.|. +||+++.|. +...+.||+||+||.|.+|.+.++++..+.
T Consensus 729 p~v~-----~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~ 772 (926)
T TIGR00580 729 PNAN-----TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKA 772 (926)
T ss_pred ccCC-----EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCccc
Confidence 5666 899887653 445788999999999999999999876554
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=3.2e-30 Score=306.81 Aligned_cols=333 Identities=15% Similarity=0.108 Sum_probs=211.6
Q ss_pred HhccccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHH--hcCCcEEE-EeCcHHHHHHHHHHHHHHhhhc-
Q psy2371 76 VLKMRHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNS--LSGQGVHI-VTISDYLAKRDAEWMSVLYNWL- 148 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~a--L~g~~V~V-vT~n~yLA~Rd~e~~~~l~~~l- 148 (816)
.+|+.|||+|..+++.++.|+ +++++||+|||++++++.+-.. -...+.+| ++|+|+||.|.++.+..+.+.+
T Consensus 11 ~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 11 LHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred HhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999997 5679999999997654443111 11234555 6699999999999999999877
Q ss_pred ----------------------CCeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhcc-----CCC--cc-
Q psy2371 149 ----------------------GLSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVF-----NSN--DR- 196 (816)
Q Consensus 149 ----------------------glsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~-----~~~--~~- 196 (816)
++++.+++||.+.+ .+....+|+|++||+ |++...... +.. .+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~-----D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV-----DMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH-----HHHcCCccccccccccccccch
Confidence 58999999998743 334445789999994 555443221 000 00
Q ss_pred --ccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCC
Q psy2371 197 --VQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYET 274 (816)
Q Consensus 197 --~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~ 274 (816)
.+....++|+|||| | +++ |.+.+.+|++.+.. ... ....
T Consensus 166 ag~L~~v~~LVLDEAD--L-d~g----------------F~~~l~~Il~~l~r-----------------p~~---~rpr 206 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--L-EPA----------------FQELLKQIMNEQQR-----------------PPD---FLPL 206 (844)
T ss_pred hhhhccceEEEEehhh--h-ccc----------------cHHHHHHHHHhccc-----------------Ccc---cccc
Confidence 14678999999999 5 554 55577888876421 000 0013
Q ss_pred cEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCcccc
Q psy2371 275 NQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTL 354 (816)
Q Consensus 275 ~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tl 354 (816)
+.++||+|....+.++. ..++.++. .+ .+..+..+.
T Consensus 207 QtLLFSAT~p~ei~~l~-------~~~~~~p~--~i-----------------------------------~V~~~~l~a 242 (844)
T TIGR02621 207 RVVELTATSRTDGPDRT-------TLLSAEDY--KH-----------------------------------PVLKKRLAA 242 (844)
T ss_pred eEEEEecCCCccHHHHH-------HHHccCCc--ee-----------------------------------ecccccccc
Confidence 67788998765544432 12222111 10 000001111
Q ss_pred ccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHh-hccCCCc
Q psy2371 355 ASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKN-CYIKEQP 433 (816)
Q Consensus 355 a~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~-~~~~grp 433 (816)
.++.. ++..+...|...++..+.. ....+.+
T Consensus 243 ~ki~q------------------------------------------------~v~v~~e~Kl~~lv~~L~~ll~e~g~~ 274 (844)
T TIGR02621 243 KKIVK------------------------------------------------LVPPSDEKFLSTMVKELNLLMKDSGGA 274 (844)
T ss_pred cceEE------------------------------------------------EEecChHHHHHHHHHHHHHHHhhCCCc
Confidence 11110 0011122233333332211 1235678
Q ss_pred EEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH-----HHHHcCCC-------------ccEEEecCccccCccc
Q psy2371 434 VLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ-----IIAQAGHP-------------KMITIATNMAGRGTDI 495 (816)
Q Consensus 434 VLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~-----ii~~Ag~~-------------g~VtIATnmAGRGtDI 495 (816)
+||||+|++.++.+++.|++.|+ ..|||+..+.++. .+.+++++ ..|+||||+++||+||
T Consensus 275 vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDI 352 (844)
T TIGR02621 275 ILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNI 352 (844)
T ss_pred EEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccC
Confidence 99999999999999999999988 8999986555444 22222221 3699999999999999
Q ss_pred cCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCC-ceEEE
Q psy2371 496 ILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDP-GSSRF 574 (816)
Q Consensus 496 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdp-G~s~~ 574 (816)
.. .+||+...| ...|+||+|||||.|+. |.+..
T Consensus 353 d~--------------------------------------------d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 353 SA--------------------------------------------DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred Cc--------------------------------------------ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 42 188886654 68999999999999996 44466
Q ss_pred Eecc---chhhhhhcChHHHH
Q psy2371 575 YLSL---DDSLLKFFSSDQIK 592 (816)
Q Consensus 575 ~lsl---eD~l~~~~~~~~~~ 592 (816)
++++ .+.-...|+.+.+.
T Consensus 387 vv~~~~~~~~~~~vY~~~~l~ 407 (844)
T TIGR02621 387 VVHLDLGKDQDFDVYGKKIDK 407 (844)
T ss_pred EEeeccCCCcccCCCCHHHHH
Confidence 6655 12234456655544
No 62
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=4.9e-30 Score=313.12 Aligned_cols=336 Identities=18% Similarity=0.139 Sum_probs=215.8
Q ss_pred ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---------CCcEEEEeCcHHHHHHHHHHHHH-----
Q psy2371 80 RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---------GQGVHIVTISDYLAKRDAEWMSV----- 143 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---------g~~V~VvT~n~yLA~Rd~e~~~~----- 143 (816)
.|+|+|..+++.+++|+ |+.++||+|||++|.+|++...+. |..+++|+|+++||.+.+..+..
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i 111 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEI 111 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999998 999999999999999999865432 23599999999999998875442
Q ss_pred --Hhh----hc-CCeEEEecCCCCHHHHHhh--cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh
Q psy2371 144 --LYN----WL-GLSIGVNSSEISHSLKKKS--YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 144 --l~~----~l-glsv~~i~~~~~~~~r~~~--y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li 214 (816)
++. .+ ++++++..|+.+..++... ..+||+++||++|. .+|... .-...+++++++||||||.++
T Consensus 112 ~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~-~ll~~~----~~~~~l~~l~~VVIDE~H~l~- 185 (876)
T PRK13767 112 REIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLA-ILLNSP----KFREKLRTVKWVIVDEIHSLA- 185 (876)
T ss_pred HHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHH-HHhcCh----hHHHHHhcCCEEEEechhhhc-
Confidence 221 22 7788999999887665433 36899999999972 333221 001135789999999999988
Q ss_pred hccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhH--HHHHHHHH
Q psy2371 215 DEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGY--EKYENILI 292 (816)
Q Consensus 215 Dea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~--~~~e~~l~ 292 (816)
+..+. ..+...+.++...... ..+.+.||+|.. +.+.+|+
T Consensus 186 ~~~RG------------~~l~~~L~rL~~l~~~-------------------------~~q~IglSATl~~~~~va~~L- 227 (876)
T PRK13767 186 ENKRG------------VHLSLSLERLEELAGG-------------------------EFVRIGLSATIEPLEEVAKFL- 227 (876)
T ss_pred cCccH------------HHHHHHHHHHHHhcCC-------------------------CCeEEEEecccCCHHHHHHHh-
Confidence 43221 0111122222221111 245678888743 2333333
Q ss_pred HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcc
Q psy2371 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGM 372 (816)
Q Consensus 293 ~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~Gm 372 (816)
... .+.-....+.+++....+
T Consensus 228 ---------~~~--~~~~~~r~~~iv~~~~~k------------------------------------------------ 248 (876)
T PRK13767 228 ---------VGY--EDDGEPRDCEIVDARFVK------------------------------------------------ 248 (876)
T ss_pred ---------cCc--cccCCCCceEEEccCCCc------------------------------------------------
Confidence 100 000001111222110000
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
.+.+. +..|.. +.+..+.......+...+.+....++++||||+|+..++.++..|+
T Consensus 249 -------------~~~i~-v~~p~~---------~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~ 305 (876)
T PRK13767 249 -------------PFDIK-VISPVD---------DLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLR 305 (876)
T ss_pred -------------cceEE-EeccCc---------cccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHH
Confidence 00001 111110 0111111222233344444444456789999999999999999998
Q ss_pred hC------CCCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHH
Q psy2371 453 KN------NLPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKK 524 (816)
Q Consensus 453 ~~------gi~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (816)
+. +.++.++||.....++..+.++++.| .|+|||+.++||+||
T Consensus 306 ~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDi----------------------------- 356 (876)
T PRK13767 306 KRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDI----------------------------- 356 (876)
T ss_pred HhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCC-----------------------------
Confidence 73 46788999997766665555555444 799999999999999
Q ss_pred HHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC-CCCceEEEEeccchhhhh
Q psy2371 525 LKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ-GDPGSSRFYLSLDDSLLK 584 (816)
Q Consensus 525 ~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq-GdpG~s~~~lsleD~l~~ 584 (816)
|.|. +||+++.|.|...|.||+|||||. |.++...++....|++..
T Consensus 357 ---------p~Vd-----~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e 403 (876)
T PRK13767 357 ---------GYID-----LVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVE 403 (876)
T ss_pred ---------CCCc-----EEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHH
Confidence 5566 999999999999999999999987 455667777766666654
No 63
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=3.7e-30 Score=303.03 Aligned_cols=321 Identities=17% Similarity=0.148 Sum_probs=224.8
Q ss_pred HHHHHHHhccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 70 REASKRVLKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 70 rea~~R~lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
+++.++.+|+. ++|+|..++.++++|+ ++.|+||+|||++|.+|+++ .+..+.|++|+..|..+..+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~---- 74 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLR---- 74 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHH----
Confidence 45667788885 6899999999999988 99999999999999999984 34558899999999987776554
Q ss_pred hcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCc
Q psy2371 147 WLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTP 220 (816)
Q Consensus 147 ~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tp 220 (816)
.+|+.+..+.++.+..++... ...+|+|+||.++.-+.+.+.+ ....+.++||||||.+. +-+.
T Consensus 75 ~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l-------~~~~l~~iViDEaH~i~-~~g~-- 144 (591)
T TIGR01389 75 AAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNML-------QRIPIALVAVDEAHCVS-QWGH-- 144 (591)
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHH-------hcCCCCEEEEeCCcccc-cccC--
Confidence 369999999888876544322 3579999999998544444332 23478999999999986 3211
Q ss_pred ceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHH
Q psy2371 221 LIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHV 300 (816)
Q Consensus 221 liisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~ 300 (816)
.....|. .+..+...++. ...+.||++....+..-+ ...
T Consensus 145 --------~frp~y~-~l~~l~~~~~~--------------------------~~vi~lTAT~~~~~~~~i------~~~ 183 (591)
T TIGR01389 145 --------DFRPEYQ-RLGSLAERFPQ--------------------------VPRIALTATADAETRQDI------REL 183 (591)
T ss_pred --------ccHHHHH-HHHHHHHhCCC--------------------------CCEEEEEeCCCHHHHHHH------HHH
Confidence 0111244 44444444432 235677776554433222 000
Q ss_pred HhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchH
Q psy2371 301 LYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEA 380 (816)
Q Consensus 301 l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~ 380 (816)
+. +...
T Consensus 184 -l~-------------------------------------------~~~~------------------------------ 189 (591)
T TIGR01389 184 -LR-------------------------------------------LADA------------------------------ 189 (591)
T ss_pred -cC-------------------------------------------CCCC------------------------------
Confidence 00 0000
Q ss_pred HHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEE
Q psy2371 381 YEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSV 460 (816)
Q Consensus 381 ~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~v 460 (816)
.++.-+.++|... +.......+...+.+.+.+. .+.++||||+|+..++.+++.|...|+++..
T Consensus 190 ---------~~~~~~~~r~nl~-----~~v~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~ 253 (591)
T TIGR01389 190 ---------NEFITSFDRPNLR-----FSVVKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALA 253 (591)
T ss_pred ---------CeEecCCCCCCcE-----EEEEeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEE
Confidence 0000011111110 00011223455566666543 3788999999999999999999999999999
Q ss_pred EcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhc
Q psy2371 461 LNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVIS 538 (816)
Q Consensus 461 Lnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 538 (816)
+||.....+++.+.+++. .-.|+|||+.+|+|+|+ |+|.
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~--------------------------------------p~v~- 294 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDK--------------------------------------PNVR- 294 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcC--------------------------------------CCCC-
Confidence 999866555554444333 45799999999999999 6676
Q ss_pred cCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 539 SGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 539 ~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+||+++.|.|...|.|++|||||.|.+|.+.+|.+.+|.
T Consensus 295 ----~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 295 ----FVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred ----EEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 999999999999999999999999999999999888873
No 64
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=1.1e-29 Score=300.78 Aligned_cols=309 Identities=18% Similarity=0.217 Sum_probs=210.7
Q ss_pred HHHHhccccchhhhhhhccccCC--------ceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 73 SKRVLKMRHFDVQLIGGIALHYG--------NISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 73 ~~R~lg~~p~~VQ~~~~~~L~~G--------~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
....|++.|++.|..++..+.++ ++++++||+|||++|++|++.....|.+|.|++||++||.|.++.+..+
T Consensus 228 ~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 228 FLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHH
Confidence 34568999999999999988654 4999999999999999999977778999999999999999999999999
Q ss_pred hhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 145 YNWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
+..+|+++++++|+++..+|... -.+||++|||+.+ .+. .....+.++||||+|.+-.+
T Consensus 308 ~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll-----~~~-------~~~~~l~lvVIDEaH~fg~~--- 372 (630)
T TIGR00643 308 LAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALI-----QEK-------VEFKRLALVIIDEQHRFGVE--- 372 (630)
T ss_pred hcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH-----hcc-------ccccccceEEEechhhccHH---
Confidence 99999999999999986654432 2579999999876 332 23467899999999986421
Q ss_pred CcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHH
Q psy2371 219 TPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRA 298 (816)
Q Consensus 219 tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A 298 (816)
.-..+...... . ...+.+.+|+|.....-. +
T Consensus 373 ------------------qr~~l~~~~~~-----------------~------~~~~~l~~SATp~prtl~------l-- 403 (630)
T TIGR00643 373 ------------------QRKKLREKGQG-----------------G------FTPHVLVMSATPIPRTLA------L-- 403 (630)
T ss_pred ------------------HHHHHHHhccc-----------------C------CCCCEEEEeCCCCcHHHH------H--
Confidence 11111111110 0 013456667664332110 0
Q ss_pred HHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccc
Q psy2371 299 HVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAET 378 (816)
Q Consensus 299 ~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~t 378 (816)
..+. +.+ +.++
T Consensus 404 -~~~~-~l~-------~~~i------------------------------------------------------------ 414 (630)
T TIGR00643 404 -TVYG-DLD-------TSII------------------------------------------------------------ 414 (630)
T ss_pred -HhcC-Ccc-------eeee------------------------------------------------------------
Confidence 0000 000 0000
Q ss_pred hHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHh--------HHHHHHH
Q psy2371 379 EAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIEN--------SELLSNI 450 (816)
Q Consensus 379 e~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~--------se~Ls~~ 450 (816)
-.+|..+. .-...+ .....+ ..+...+.+....|+.++|||++++. ++.+++.
T Consensus 415 -------------~~~p~~r~----~i~~~~-~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~ 475 (630)
T TIGR00643 415 -------------DELPPGRK----PITTVL-IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYER 475 (630)
T ss_pred -------------ccCCCCCC----ceEEEE-eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHH
Confidence 01121110 000011 111111 34455555544578889999998754 4566777
Q ss_pred HHh--CCCCeEEEcCCchHHHHHHHHH--cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHH
Q psy2371 451 LKK--NNLPHSVLNAKQHKLEAQIIAQ--AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526 (816)
Q Consensus 451 L~~--~gi~~~vLnak~~~rEa~ii~~--Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (816)
|.+ .++++.++||+....|+..+.+ .-+...|+|||++++||+||
T Consensus 476 L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi------------------------------- 524 (630)
T TIGR00643 476 LKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV------------------------------- 524 (630)
T ss_pred HHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc-------------------------------
Confidence 775 3788999999865555444444 43355899999999999999
Q ss_pred HHHHhhhhhhhccCceEEEEecCCC-CcchhhhhcCccCCCCCCceEEEEe
Q psy2371 527 NEWMLLHDKVISSGGLHIIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYL 576 (816)
Q Consensus 527 ~~~~~~~~~V~~~GGLhVI~te~pe-s~rid~Q~~GRtGRqGdpG~s~~~l 576 (816)
|+|. +||+++.|. +...+.||+||+||.|.+|.+.++.
T Consensus 525 -------P~v~-----~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 525 -------PNAT-----VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred -------CCCc-----EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 5665 899999875 4567788999999999999998887
No 65
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=4.1e-29 Score=309.51 Aligned_cols=305 Identities=19% Similarity=0.142 Sum_probs=213.3
Q ss_pred HHHhccccchhhhhhhccccCC--------ceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 74 KRVLKMRHFDVQLIGGIALHYG--------NISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 74 ~R~lg~~p~~VQ~~~~~~L~~G--------~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
...+++.|+++|..+++.+..| .+++++||+|||++|++|++.....|++|.|++||++||.|.++.+...+
T Consensus 594 ~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 3457899999999999988765 39999999999999999998776789999999999999999999999988
Q ss_pred hhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 146 NWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
..+++++.++.++.+..++... -.+||+||||+- |.. ......+.++||||+|.+-
T Consensus 674 ~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l-----L~~-------~v~~~~L~lLVIDEahrfG------ 735 (1147)
T PRK10689 674 ANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL-----LQS-------DVKWKDLGLLIVDEEHRFG------ 735 (1147)
T ss_pred ccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH-----HhC-------CCCHhhCCEEEEechhhcc------
Confidence 8889999999888876554432 258999999953 222 2234689999999999962
Q ss_pred cceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHH
Q psy2371 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAH 299 (816)
Q Consensus 220 pliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~ 299 (816)
+. . ...++.++. ..+.++||+|.+.....+. .
T Consensus 736 --------------~~-~-~e~lk~l~~-------------------------~~qvLl~SATpiprtl~l~-------~ 767 (1147)
T PRK10689 736 --------------VR-H-KERIKAMRA-------------------------DVDILTLTATPIPRTLNMA-------M 767 (1147)
T ss_pred --------------hh-H-HHHHHhcCC-------------------------CCcEEEEcCCCCHHHHHHH-------H
Confidence 11 1 122344432 3567788998665432221 1
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
..+ ++..
T Consensus 768 ~gl-~d~~------------------------------------------------------------------------ 774 (1147)
T PRK10689 768 SGM-RDLS------------------------------------------------------------------------ 774 (1147)
T ss_pred hhC-CCcE------------------------------------------------------------------------
Confidence 111 1110
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeE-ecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC--CC
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKI-YKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN--NL 456 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v-~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~--gi 456 (816)
++..|+.. |..-...+ .........++..++. .|..|+|||++++.++.+++.|++. ++
T Consensus 775 -----------~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el~----r~gqv~vf~n~i~~ie~la~~L~~~~p~~ 836 (1147)
T PRK10689 775 -----------IIATPPAR---RLAVKTFVREYDSLVVREAILREIL----RGGQVYYLYNDVENIQKAAERLAELVPEA 836 (1147)
T ss_pred -----------EEecCCCC---CCCceEEEEecCcHHHHHHHHHHHh----cCCeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 01111100 00000000 0011112334555543 3456999999999999999999987 78
Q ss_pred CeEEEcCCch--HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhh
Q psy2371 457 PHSVLNAKQH--KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHD 534 (816)
Q Consensus 457 ~~~vLnak~~--~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (816)
++.++||+.. +|++.+.+++.++..|+|||++++||+|| |
T Consensus 837 ~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI--------------------------------------P 878 (1147)
T PRK10689 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI--------------------------------------P 878 (1147)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc--------------------------------------c
Confidence 9999999954 45555666665567899999999999999 5
Q ss_pred hhhccCceEEEEecC-CCCcchhhhhcCccCCCCCCceEEEEecc
Q psy2371 535 KVISSGGLHIIGTER-HESRRIDNQLRGRSGRQGDPGSSRFYLSL 578 (816)
Q Consensus 535 ~V~~~GGLhVI~te~-pes~rid~Q~~GRtGRqGdpG~s~~~lsl 578 (816)
+|. +||..+- +-+...|.||+||+||.|..|.+.++.+.
T Consensus 879 ~v~-----~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 879 TAN-----TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCC-----EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 676 8883221 11234599999999999999999887654
No 66
>KOG0329|consensus
Probab=99.97 E-value=1e-30 Score=267.70 Aligned_cols=299 Identities=19% Similarity=0.222 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh--cCC-cEEEEeCcHHHHHH
Q psy2371 62 LPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL--SGQ-GVHIVTISDYLAKR 136 (816)
Q Consensus 62 l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL--~g~-~V~VvT~n~yLA~R 136 (816)
-||.+..+-..++. .|..||..|+|-..-|. ++|++.|-|||.+|+|..+.+.- .|. .|+|+|.|||||-|
T Consensus 50 kpellraivdcgfe----hpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 50 KPELLRAIVDCGFE----HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred CHHHHHHHHhccCC----CchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHH
Confidence 48998888777776 59999999999665565 99999999999999999986643 343 58999999999999
Q ss_pred HHHHHHHHhhhc-CCeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 137 DAEWMSVLYNWL-GLSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 137 d~e~~~~l~~~l-glsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+..++.+|.+++ +++|++.+||++.. +.....-++|++|||||+ .-+.|+ ..+.+..+...|+||+|.||
T Consensus 126 i~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGri-lALvr~------k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 126 ISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRI-LALVRN------RSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHH-HHHHHh------ccCchhhcceeehhhHHHHH
Confidence 999999999998 89999999998732 223333679999999998 344443 35677889999999999999
Q ss_pred hhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEE-EechhhHHHHHHHHH
Q psy2371 214 IDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQV-FLTENGYEKYENILI 292 (816)
Q Consensus 214 iDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v-~lt~~g~~~~e~~l~ 292 (816)
-+ .+++. .+.+|.+.-|. .+|+ +|+++-...+.-..
T Consensus 199 e~---------------lDMrR-DvQEifr~tp~--------------------------~KQvmmfsatlskeiRpvC- 235 (387)
T KOG0329|consen 199 EQ---------------LDMRR-DVQEIFRMTPH--------------------------EKQVMMFSATLSKEIRPVC- 235 (387)
T ss_pred HH---------------HHHHH-HHHHHhhcCcc--------------------------cceeeeeeeecchhhHHHH-
Confidence 22 12345 77777776664 4554 56666555544433
Q ss_pred HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcc
Q psy2371 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGM 372 (816)
Q Consensus 293 ~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~Gm 372 (816)
+.+|+...+-.|+| .+-=. -.||+| .|.++
T Consensus 236 ------~kFmQdPmEi~vDd--------E~KLt------LHGLqQ-----------------------~YvkL------- 265 (387)
T KOG0329|consen 236 ------HKFMQDPMEIFVDD--------EAKLT------LHGLQQ-----------------------YYVKL------- 265 (387)
T ss_pred ------HhhhcCchhhhccc--------hhhhh------hhhHHH-----------------------HHHhh-------
Confidence 23444333322322 11000 012332 22221
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
.+.+|...+.+.+. ..+-+| |+||+.|+.. |+
T Consensus 266 ---------------------------------------ke~eKNrkl~dLLd-~LeFNQ-VvIFvKsv~R---l~---- 297 (387)
T KOG0329|consen 266 ---------------------------------------KENEKNRKLNDLLD-VLEFNQ-VVIFVKSVQR---LS---- 297 (387)
T ss_pred ---------------------------------------hhhhhhhhhhhhhh-hhhhcc-eeEeeehhhh---hh----
Confidence 12334334444332 223444 9999999866 11
Q ss_pred hCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhh
Q psy2371 453 KNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532 (816)
Q Consensus 453 ~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (816)
+ + .+ +||||+.|||+||
T Consensus 298 ----------------------f--~-kr-~vat~lfgrgmdi------------------------------------- 314 (387)
T KOG0329|consen 298 ----------------------F--Q-KR-LVATDLFGRGMDI------------------------------------- 314 (387)
T ss_pred ----------------------h--h-hh-hHHhhhhccccCc-------------------------------------
Confidence 1 1 23 8899999999999
Q ss_pred hhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 533 ~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+.|. -|+|||+|+++..|.||.|||||.|..|-++.|+|.+.+
T Consensus 315 -ervN-----i~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 315 -ERVN-----IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred -ccce-----eeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 4565 899999999999999999999999999999999998765
No 67
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=6e-28 Score=290.90 Aligned_cols=325 Identities=18% Similarity=0.182 Sum_probs=213.5
Q ss_pred hcc-ccchhhhhhhcc-ccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 77 LKM-RHFDVQLIGGIA-LHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~-L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
.|+ .|||+|..++.. +++|+ ++.++||+|||++|.+|++.....|..+.+++|+++||.|.++.+..+. .+|++|
T Consensus 19 ~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~-~~g~~v 97 (737)
T PRK02362 19 EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFE-ELGVRV 97 (737)
T ss_pred CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhh-cCCCEE
Confidence 565 699999999986 67776 9999999999999999999666678889999999999999999988754 469999
Q ss_pred EEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchh
Q psy2371 153 GVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQ 232 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~ 232 (816)
+..+|+.+...+.. -.+||+++||+++ ..+++.. ....+.+.++||||||.++ |..+.|
T Consensus 98 ~~~tGd~~~~~~~l-~~~~IiV~Tpek~-~~llr~~------~~~l~~v~lvViDE~H~l~-d~~rg~------------ 156 (737)
T PRK02362 98 GISTGDYDSRDEWL-GDNDIIVATSEKV-DSLLRNG------APWLDDITCVVVDEVHLID-SANRGP------------ 156 (737)
T ss_pred EEEeCCcCcccccc-CCCCEEEECHHHH-HHHHhcC------hhhhhhcCEEEEECccccC-CCcchH------------
Confidence 99999876433221 3579999999996 2333321 1234689999999999887 654321
Q ss_pred hhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhh--HHHHHHHHHHHHHHHHHHhccCcceEE
Q psy2371 233 YFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENG--YEKYENILIKMALRAHVLYHKNKHYII 310 (816)
Q Consensus 233 ~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g--~~~~e~~l~~~Al~A~~l~~~~~dYiV 310 (816)
.+..++..+... ....|-+.||++. ...+.+|++ |. ++
T Consensus 157 ----~le~il~rl~~~----------------------~~~~qii~lSATl~n~~~la~wl~-----~~-~~-------- 196 (737)
T PRK02362 157 ----TLEVTLAKLRRL----------------------NPDLQVVALSATIGNADELADWLD-----AE-LV-------- 196 (737)
T ss_pred ----HHHHHHHHHHhc----------------------CCCCcEEEEcccCCCHHHHHHHhC-----CC-cc--------
Confidence 223334443210 0124667777764 223334430 00 00
Q ss_pred eCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCe
Q psy2371 311 KNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLE 390 (816)
Q Consensus 311 ~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~ 390 (816)
...| .. +. ...|. +.-+
T Consensus 197 -----------------~~~~--------------------rp---v~---------l~~~v--------------~~~~ 213 (737)
T PRK02362 197 -----------------DSEW--------------------RP---ID---------LREGV--------------FYGG 213 (737)
T ss_pred -----------------cCCC--------------------CC---CC---------CeeeE--------------ecCC
Confidence 0000 00 00 00000 0000
Q ss_pred EEEcCC-CCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCC--------------
Q psy2371 391 TITVPP-NKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNN-------------- 455 (816)
Q Consensus 391 vv~IPt-~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~g-------------- 455 (816)
.+..+. ..+.. ..+.......+.+ .+..+.|+||||+|+..++.++..|....
T Consensus 214 ~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 281 (737)
T PRK02362 214 AIHFDDSQREVE--------VPSKDDTLNLVLD----TLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAE 281 (737)
T ss_pred eeccccccccCC--------CccchHHHHHHHH----HHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 000011 00000 0111233333333 33467789999999999999998886531
Q ss_pred ----------------------CCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhc
Q psy2371 456 ----------------------LPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKN 511 (816)
Q Consensus 456 ----------------------i~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~ 511 (816)
..+..+||.....|+.++..+++.| +|+|||+.++||+|+
T Consensus 282 ~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gvnl---------------- 345 (737)
T PRK02362 282 LAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNL---------------- 345 (737)
T ss_pred HHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCC----------------
Confidence 2456789998777888887777666 799999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE----ec-----CCCCcchhhhhcCccCCCCCC--ceEEEEeccch
Q psy2371 512 ISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG----TE-----RHESRRIDNQLRGRSGRQGDP--GSSRFYLSLDD 580 (816)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~----te-----~pes~rid~Q~~GRtGRqGdp--G~s~~~lsleD 580 (816)
|.+. +||. ++ .|-+...|.|++|||||.|.. |.+.++....|
T Consensus 346 ----------------------Pa~~-----VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 346 ----------------------PARR-----VIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred ----------------------CceE-----EEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 4453 7775 43 577888999999999999965 99888876544
Q ss_pred h
Q psy2371 581 S 581 (816)
Q Consensus 581 ~ 581 (816)
+
T Consensus 399 ~ 399 (737)
T PRK02362 399 E 399 (737)
T ss_pred h
Confidence 3
No 68
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=2.6e-28 Score=308.82 Aligned_cols=345 Identities=16% Similarity=0.142 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHH
Q psy2371 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 64 ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
+.+.-..+..++++|+.|+++|..+++.+++|+ ++.|+||+|||+++.+|+...+..|..++||+||++||.|.++.+
T Consensus 63 ~~~~~~~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 63 NEVEEFEEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHH
Confidence 445566666778899999999999999999998 999999999999777777766678889999999999999999999
Q ss_pred HHHhhhcC--CeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 142 SVLYNWLG--LSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 142 ~~l~~~lg--lsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
..+...+| +.+.++.|+++.+++... -.+||+||||+++ .+++.+. ....+.++||||||+||
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL-~~~~~~l--------~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFL-ARNFPEM--------KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchh-HHhHHHH--------hhCCCCEEEEECceecc
Confidence 99998865 566778899886654321 2489999999977 3433221 12578999999999998
Q ss_pred hhccC---CcceeccccccchhhhHHHHh----hHhhhccchhhhh-hhhhhcccccCCCCCeEEeCCCc-EEEechhhH
Q psy2371 214 IDEAR---TPLIISGEIKNNAQYFYKIIN----PIPKLLVPEIDTK-NIKKNIKYTKKNTGDYIIDYETN-QVFLTENGY 284 (816)
Q Consensus 214 iDea~---tpliisg~~~~~~~~y~~~i~----~iv~~L~~~~~~~-~~~~~~~~~~~~~~~y~vd~~~~-~v~lt~~g~ 284 (816)
+.+. .-|.+.| |.+++. ++++.-+....+. .+++.. .......+....+ .+++|+++.
T Consensus 214 -~~~knid~~L~llG--------F~~e~~~~~~~il~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 214 -KASKNIDRSLQLLG--------FYEEIIEKAWKIIYLKKQGNIEDAMEKREI----LNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred -ccccccchhhhcCC--------ChHHHHHHHHHhhhcccccccchhhhhhhh----hhhhhhhcCCCccEEEEEecCCC
Confidence 3221 0111112 222222 2322111000000 000000 0000000000111 123344433
Q ss_pred HHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHh
Q psy2371 285 EKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFR 364 (816)
Q Consensus 285 ~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~ 364 (816)
.+-..
T Consensus 281 ~r~~~--------------------------------------------------------------------------- 285 (1638)
T PRK14701 281 AKGDR--------------------------------------------------------------------------- 285 (1638)
T ss_pred chhHH---------------------------------------------------------------------------
Confidence 21000
Q ss_pred hhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHh-
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIEN- 443 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~- 443 (816)
...|.+.. .+.+....+..|.-...+++.....| ..+++.+... |.++||||+|.+.
T Consensus 286 ---------------~~l~~~~l---~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~ 343 (1638)
T PRK14701 286 ---------------VKLYRELL---GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGA 343 (1638)
T ss_pred ---------------HHHhhcCe---EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccc
Confidence 00011100 11222222222222222333444445 4566665432 5679999999875
Q ss_pred --HHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEec----CccccCccccCCCCchhhHHHhhhcchhhHH
Q psy2371 444 --SELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIAT----NMAGRGTDIILGGNIDSYIKDIKKNISSEVK 517 (816)
Q Consensus 444 --se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIAT----nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~ 517 (816)
++.|++.|.+.|+++..+||+ |+..+-.+.-+...|+||| |+|+||+||
T Consensus 344 e~ae~la~~L~~~Gi~a~~~h~~---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDi---------------------- 398 (1638)
T PRK14701 344 EKAEEIEKYLLEDGFKIELVSAK---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDL---------------------- 398 (1638)
T ss_pred hHHHHHHHHHHHCCCeEEEecch---HHHHHHHHHcCCCCEEEEecCCCCeeEecCcc----------------------
Confidence 589999999999999999995 6777767766677999999 699999999
Q ss_pred HHHHHHHHHHHHHhhhhh-hhccCceEEEEecCCC---Ccchhhhhc-------------CccCCCCCCceEE
Q psy2371 518 KKNKIKKLKNEWMLLHDK-VISSGGLHIIGTERHE---SRRIDNQLR-------------GRSGRQGDPGSSR 573 (816)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~-V~~~GGLhVI~te~pe---s~rid~Q~~-------------GRtGRqGdpG~s~ 573 (816)
|+ |+ |||+++.|. |.+.|.|-. ||+||-|.|+...
T Consensus 399 ----------------P~~Vr-----yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 399 ----------------PERIR-----FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred ----------------CCccC-----EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 55 77 999999999 888777766 9999999997774
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=2.7e-27 Score=279.63 Aligned_cols=358 Identities=18% Similarity=0.183 Sum_probs=224.4
Q ss_pred hhhhhhhccccCCc--eeeecCCCCchHH---------HHHHHHHHH--h----cCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 83 DVQLIGGIALHYGN--ISEMQTGEGKTLV---------ATLAAYLNS--L----SGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~--Iaem~TGEGKTL~---------~~Lpa~l~a--L----~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
++|....+.+.+|+ |++++||+|||.+ |++|.+... + .+..+.|++|+++||.|.++.++...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 58999999998888 9999999999987 444544221 2 24579999999999999999887765
Q ss_pred hh---cCCeEEEecCCCCHHH-HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 146 NW---LGLSIGVNSSEISHSL-KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 146 ~~---lglsv~~i~~~~~~~~-r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
.+ -|+++.+.+||++.+. .......+|+++|++-. + ..+.++.++||||||.++.+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l--------~~L~~v~~VVIDEaHEr~~~~----- 307 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------L--------NKLFDYGTVIIDEVHEHDQIG----- 307 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------c--------cccccCCEEEccccccCccch-----
Confidence 44 4788899999987432 11222679999998621 1 134689999999999987432
Q ss_pred eeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHH
Q psy2371 222 IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVL 301 (816)
Q Consensus 222 iisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l 301 (816)
+.+-.+++.+.. ...+.++||+|..+.++++. .+
T Consensus 308 --------------DllL~llk~~~~------------------------~~rq~ILmSATl~~dv~~l~--------~~ 341 (675)
T PHA02653 308 --------------DIIIAVARKHID------------------------KIRSLFLMTATLEDDRDRIK--------EF 341 (675)
T ss_pred --------------hHHHHHHHHhhh------------------------hcCEEEEEccCCcHhHHHHH--------HH
Confidence 122233333322 01367888998765554421 12
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
|. +. .++ .+. ..++
T Consensus 342 ~~-~p-------~~I-----------------------------~I~--grt~--------------------------- 355 (675)
T PHA02653 342 FP-NP-------AFV-----------------------------HIP--GGTL--------------------------- 355 (675)
T ss_pred hc-CC-------cEE-----------------------------EeC--CCcC---------------------------
Confidence 22 10 000 010 0011
Q ss_pred HHHHHhcCeEEEcCCC-CccccccCcCeEecChHHHHHHHHHHHHhhc-cCCCcEEEEEcccHhHHHHHHHHHhC--CCC
Q psy2371 382 EFQEIYKLETITVPPN-KINKRKDLQDKIYKTMEEKYQAILMDIKNCY-IKEQPVLVGTTSIENSELLSNILKKN--NLP 457 (816)
Q Consensus 382 e~~~~Y~l~vv~IPt~-~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~-~~grpVLVft~si~~se~Ls~~L~~~--gi~ 457 (816)
|.+....++.. .|..+. + |. ..+|. .++..+.... ..+..+|||+++++.++.+++.|.+. +++
T Consensus 356 -----~pV~~~yi~~~~~~~~~~---~--y~-~~~k~-~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~ 423 (675)
T PHA02653 356 -----FPISEVYVKNKYNPKNKR---A--YI-EEEKK-NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYD 423 (675)
T ss_pred -----CCeEEEEeecCcccccch---h--hh-HHHHH-HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCce
Confidence 11111112111 111111 1 11 11222 2333333221 23557999999999999999999987 799
Q ss_pred eEEEcCCchHHHHHHHHH-cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhh
Q psy2371 458 HSVLNAKQHKLEAQIIAQ-AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKV 536 (816)
Q Consensus 458 ~~vLnak~~~rEa~ii~~-Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 536 (816)
+..|||+..++|+.+-+. ...+.+|+||||+|+||+|| |+|
T Consensus 424 v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDI--------------------------------------p~V 465 (675)
T PHA02653 424 FYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTI--------------------------------------RNA 465 (675)
T ss_pred EEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccc--------------------------------------cCe
Confidence 999999976666544443 22345899999999999999 677
Q ss_pred hccCceEEEEec---CCC---------CcchhhhhcCccCCCCCCceEEEEeccchh-hhhhcChHHHHHH---HHHcCC
Q psy2371 537 ISSGGLHIIGTE---RHE---------SRRIDNQLRGRSGRQGDPGSSRFYLSLDDS-LLKFFSSDQIKIV---MEKLKI 600 (816)
Q Consensus 537 ~~~GGLhVI~te---~pe---------s~rid~Q~~GRtGRqGdpG~s~~~lsleD~-l~~~~~~~~~~~~---~~~~~~ 600 (816)
. |||+++ .|. |...+.||+|||||. .||.+..+.+.++- .+.+...+.+..+ +..+|+
T Consensus 466 ~-----~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~~~~L~~~vL~lk~~g~ 539 (675)
T PHA02653 466 T-----HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRIDSEFLHNYILYAKYFNL 539 (675)
T ss_pred e-----EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHhHHHHHHHHHHHHHcCC
Confidence 6 999998 565 777899999999999 89999999987662 1222221112222 356676
Q ss_pred CCCC-cccccHHHHHHHHHHHHHHHhcH
Q psy2371 601 PKGK-SIESNLASYSIESAQRKIELRNF 627 (816)
Q Consensus 601 ~~~~-~i~~~~~~~~i~~aQ~~~e~~~~ 627 (816)
+..+ ..-.+--..+++.|...+...+.
T Consensus 540 ~~~~~~~ldpP~~~~l~~A~~~L~~lga 567 (675)
T PHA02653 540 TLPEDLFVIPSNLDRLRKTEEYIDSFNI 567 (675)
T ss_pred CCcccccCCCCCHHHHHHHHHHHHHcCC
Confidence 4211 11122224567777777766653
No 70
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=1e-27 Score=297.66 Aligned_cols=329 Identities=17% Similarity=0.137 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHH-HHhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 66 FSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYL-NSLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 66 ~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l-~aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
+.-..+...+.+|..|+++|..+++.+++|+ ++.|+||+|||+ |++|+.+ .+..|..+.|++||++||.|.++.+.
T Consensus 66 ~~~~~~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 66 YKEFEKFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH
Confidence 3333445568899999999999999999998 899999999996 5555443 34467889999999999999999999
Q ss_pred HHhhhcCCeEEEecCCCC--HHHHH------hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh
Q psy2371 143 VLYNWLGLSIGVNSSEIS--HSLKK------KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 143 ~l~~~lglsv~~i~~~~~--~~~r~------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li 214 (816)
.+....++.+.++.++.+ ..++. ..-.+||++|||+++ .+ ++. .+....++++||||||+||
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL-~~----~~~----~l~~~~~~~lVvDEaD~~L- 214 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFL-SK----NFD----ELPKKKFDFVFVDDVDAVL- 214 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHH-HH----HHH----hccccccCEEEEEChHHhh-
Confidence 999999999988877643 22221 112589999999987 33 331 2233569999999999999
Q ss_pred hccCC---cceeccccccchhhh-HHHHhhHhhhccchhh-----hhhhhhhcccccCCCCCeEEeCCCcEEEechhhHH
Q psy2371 215 DEART---PLIISGEIKNNAQYF-YKIINPIPKLLVPEID-----TKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYE 285 (816)
Q Consensus 215 Dea~t---pliisg~~~~~~~~y-~~~i~~iv~~L~~~~~-----~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~ 285 (816)
+.++. -|.+.| | .+.+..++..++.... +....+...- ..+. ..+.+.+++|+|+..
T Consensus 215 ~~~k~id~~l~~lG--------F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i-----~~~~-~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 215 KSSKNIDKLLYLLG--------FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKI-----AELK-DKKGVLVVSSATGRP 280 (1176)
T ss_pred hcccchhhHHHhCC--------CCHHHHHHHHHhcccccccchhhhHHHHHHHhh-----hhcc-cCCceEEEEeCCCCc
Confidence 54332 111122 3 1256666666653100 0000000000 0000 002233444554432
Q ss_pred H-HHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHh
Q psy2371 286 K-YENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFR 364 (816)
Q Consensus 286 ~-~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~ 364 (816)
+ +...
T Consensus 281 ~~~~~~-------------------------------------------------------------------------- 286 (1176)
T PRK09401 281 RGNRVK-------------------------------------------------------------------------- 286 (1176)
T ss_pred cchHHH--------------------------------------------------------------------------
Confidence 2 1110
Q ss_pred hhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHh-
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIEN- 443 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~- 443 (816)
.|.+..+..| .+.....|.-..-++..+ +|...+.+.+... |.++||||+|...
T Consensus 287 -----------------l~~~ll~~~v---~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~ 341 (1176)
T PRK09401 287 -----------------LFRELLGFEV---GSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGK 341 (1176)
T ss_pred -----------------HhhccceEEe---cCcccccCCceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccCh
Confidence 0111111111 000000010001111222 4566666665432 4579999999877
Q ss_pred --HHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEe----cCccccCccccCCCCchhhHHHhhhcchhhHH
Q psy2371 444 --SELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIA----TNMAGRGTDIILGGNIDSYIKDIKKNISSEVK 517 (816)
Q Consensus 444 --se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIA----TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~ 517 (816)
++.|++.|+..|+++..+||+. ++.+-+++-+...|+|| ||+|+||+||
T Consensus 342 ~~ae~l~~~L~~~gi~v~~~hg~l---~~~l~~F~~G~~~VLVatas~tdv~aRGIDi---------------------- 396 (1176)
T PRK09401 342 EYAEELAEYLEDLGINAELAISGF---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDL---------------------- 396 (1176)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCcH---HHHHHHHHCCCCCEEEEecCCCCceeecCCC----------------------
Confidence 9999999999999999999997 34455555556689999 7999999999
Q ss_pred HHHHHHHHHHHHHhhhhh-hhccCceEEEEecCCC------CcchhhhhcCccC
Q psy2371 518 KKNKIKKLKNEWMLLHDK-VISSGGLHIIGTERHE------SRRIDNQLRGRSG 564 (816)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~-V~~~GGLhVI~te~pe------s~rid~Q~~GRtG 564 (816)
|+ |. |||+++.|. ....+.||.||+-
T Consensus 397 ----------------P~~Ir-----yVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 397 ----------------PERIR-----YAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred ----------------Cccee-----EEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 56 66 999999998 7788999999996
No 71
>PRK00254 ski2-like helicase; Provisional
Probab=99.95 E-value=4e-27 Score=283.16 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=104.2
Q ss_pred hcc-ccchhhhhhhcc-ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 77 LKM-RHFDVQLIGGIA-LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~-L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
.|+ .|+|+|..+++. +++|+ |+.++||+|||++|.+|++...+ .|..+++++|+++||.+.++.+..+ ..+|++
T Consensus 19 ~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~~~g~~ 97 (720)
T PRK00254 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-EKLGLR 97 (720)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-hhcCCE
Confidence 566 699999999975 67777 99999999999999999986655 4667999999999999999988874 457999
Q ss_pred EEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 152 IGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 152 v~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
|+..+|+.+...+. .-.+||+++||+++ ..+++.. ....+.+.++||||+|.+. |..
T Consensus 98 v~~~~Gd~~~~~~~-~~~~~IiV~Tpe~~-~~ll~~~------~~~l~~l~lvViDE~H~l~-~~~ 154 (720)
T PRK00254 98 VAMTTGDYDSTDEW-LGKYDIIIATAEKF-DSLLRHG------SSWIKDVKLVVADEIHLIG-SYD 154 (720)
T ss_pred EEEEeCCCCCchhh-hccCCEEEEcHHHH-HHHHhCC------chhhhcCCEEEEcCcCccC-Ccc
Confidence 99999987654332 23689999999986 2333321 2235689999999999987 443
No 72
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=1.1e-26 Score=277.69 Aligned_cols=132 Identities=23% Similarity=0.247 Sum_probs=106.1
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
.|+.++|+|..++..+.+|+ ++.++||+|||++|.+|++.....|..+.+++|+++||.|.++.+..+. .+|++|+.
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~ 97 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKI 97 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEE
Confidence 46789999999999998887 9999999999999999998666678889999999999999999998754 58999999
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
.+|+.+...+.. ..+||+++||+++ ..+++. .......+.++||||||.+. |+.+
T Consensus 98 ~~G~~~~~~~~~-~~~dIiv~Tpek~-~~l~~~------~~~~l~~v~lvViDEaH~l~-d~~r 152 (674)
T PRK01172 98 SIGDYDDPPDFI-KRYDVVILTSEKA-DSLIHH------DPYIINDVGLIVADEIHIIG-DEDR 152 (674)
T ss_pred EeCCCCCChhhh-ccCCEEEECHHHH-HHHHhC------ChhHHhhcCEEEEecchhcc-CCCc
Confidence 998876433222 3679999999985 222221 12335689999999999876 6554
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=4e-26 Score=263.98 Aligned_cols=337 Identities=16% Similarity=0.086 Sum_probs=208.9
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
..|+|.|..++..++.++ |+.++||+|||+++.+.+....-.++ .++|++||++|+.|..+.+..+...-...++.+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 689999999998776655 99999999999987654432112344 799999999999999888877665444556566
Q ss_pred cCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhH
Q psy2371 156 SSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFY 235 (816)
Q Consensus 156 ~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~ 235 (816)
.+|.... ..++|+++|++++. ++.. .....+.++||||||.+..+
T Consensus 193 ~~g~~~~-----~~~~I~VaT~qsl~-~~~~---------~~~~~~~~iIvDEaH~~~~~-------------------- 237 (501)
T PHA02558 193 YSGTAKD-----TDAPIVVSTWQSAV-KQPK---------EWFDQFGMVIVDECHLFTGK-------------------- 237 (501)
T ss_pred ecCcccC-----CCCCEEEeeHHHHh-hchh---------hhccccCEEEEEchhcccch--------------------
Confidence 6664321 35799999999872 2111 12357899999999998722
Q ss_pred HHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeE
Q psy2371 236 KIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKI 315 (816)
Q Consensus 236 ~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v 315 (816)
.+..++..+++ ....+.||+|........+ .+ ..+|. ++-|.+
T Consensus 238 -~~~~il~~~~~-------------------------~~~~lGLTATp~~~~~~~~---~~--~~~fG-~i~~~v----- 280 (501)
T PHA02558 238 -SLTSIITKLDN-------------------------CKFKFGLTGSLRDGKANIL---QY--VGLFG-DIFKPV----- 280 (501)
T ss_pred -hHHHHHHhhhc-------------------------cceEEEEeccCCCccccHH---HH--HHhhC-CceEEe-----
Confidence 22334444532 1335677877532111100 00 00111 011111
Q ss_pred EEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcC
Q psy2371 316 IIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVP 395 (816)
Q Consensus 316 ~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IP 395 (816)
.++ +.+ ++|......-... .+.+... ...++.+ ..-.+++.
T Consensus 281 --------------~~~----~li--~~g~l~~~~~~~v-~~~~~~~-----~~~~~~~--~~~~~~~~----------- 321 (501)
T PHA02558 281 --------------TTS----QLM--EEGQVTDLKINSI-FLRYPDE-----DRVKLKG--EDYQEEIK----------- 321 (501)
T ss_pred --------------cHH----HHH--hCCCcCCceEEEE-eccCCHH-----Hhhhhcc--cchHHHHH-----------
Confidence 011 111 1111100000000 0000000 0000000 00000000
Q ss_pred CCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHH
Q psy2371 396 PNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ 475 (816)
Q Consensus 396 t~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~ 475 (816)
...+...+...|++.+......|+++||||++++.++.|++.|++.|+++.++||+....|+..+.+
T Consensus 322 -------------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~ 388 (501)
T PHA02558 322 -------------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKK 388 (501)
T ss_pred -------------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 0112234555566666655567889999999999999999999999999999999965444433333
Q ss_pred --cCCCccEEEec-CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCC
Q psy2371 476 --AGHPKMITIAT-NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHES 552 (816)
Q Consensus 476 --Ag~~g~VtIAT-nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes 552 (816)
......|+||| +++|||+|| |.|. +||.+..+.|
T Consensus 389 ~~~~~~~~vLvaT~~~l~eG~Di--------------------------------------p~ld-----~vIl~~p~~s 425 (501)
T PHA02558 389 IAEGGKGIIIVASYGVFSTGISI--------------------------------------KNLH-----HVIFAHPSKS 425 (501)
T ss_pred HHhCCCCeEEEEEcceecccccc--------------------------------------cccc-----EEEEecCCcc
Confidence 33345799999 999999999 5676 9999998899
Q ss_pred cchhhhhcCccCCCCCCceEEEEeccchhh
Q psy2371 553 RRIDNQLRGRSGRQGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 553 ~rid~Q~~GRtGRqGdpG~s~~~lsleD~l 582 (816)
...|.|++||++|.|+.+....++..-|++
T Consensus 426 ~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 426 KIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred hhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 999999999999999988888888777753
No 74
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.94 E-value=4.9e-26 Score=284.22 Aligned_cols=326 Identities=18% Similarity=0.195 Sum_probs=199.0
Q ss_pred eecCCCCchHHHHHHHHHHHhc-------------CCcEEEEeCcHHHHHHHHHHHHHHhh------------hcCCeEE
Q psy2371 99 EMQTGEGKTLVATLAAYLNSLS-------------GQGVHIVTISDYLAKRDAEWMSVLYN------------WLGLSIG 153 (816)
Q Consensus 99 em~TGEGKTL~~~Lpa~l~aL~-------------g~~V~VvT~n~yLA~Rd~e~~~~l~~------------~lglsv~ 153 (816)
.++||+|||++|.||++.+.+. +..|++|+|+++||.+....+..... .++++|+
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 5799999999999999976552 34699999999999999988764221 3589999
Q ss_pred EecCCCCHHHHHhh--cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccch
Q psy2371 154 VNSSEISHSLKKKS--YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNA 231 (816)
Q Consensus 154 ~i~~~~~~~~r~~~--y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~ 231 (816)
+.+|+.+..+|+.. ..+||+++||++| +++|... ....+++++++||||+|.|+ +.-+-+
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL-~~LLtsk-----~r~~L~~Vr~VIVDE~H~L~-g~kRG~----------- 143 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESL-YLMLTSR-----ARETLRGVETVIIDEVHAVA-GSKRGA----------- 143 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHH-HHHHhhh-----hhhhhccCCEEEEecHHHhc-cccccc-----------
Confidence 99999997776533 3689999999998 4444421 12356899999999999998 432210
Q ss_pred hhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEe
Q psy2371 232 QYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIK 311 (816)
Q Consensus 232 ~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~ 311 (816)
.+...+.++...++. +.+.+.||+|... .+.+ |..+..
T Consensus 144 -~Lel~LeRL~~l~~~-------------------------~~QrIgLSATI~n-~eev-------A~~L~g-------- 181 (1490)
T PRK09751 144 -HLALSLERLDALLHT-------------------------SAQRIGLSATVRS-ASDV-------AAFLGG-------- 181 (1490)
T ss_pred -HHHHHHHHHHHhCCC-------------------------CCeEEEEEeeCCC-HHHH-------HHHhcC--------
Confidence 022133333332321 3467888887643 2222 122211
Q ss_pred CCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeE
Q psy2371 312 NNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLET 391 (816)
Q Consensus 312 d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~v 391 (816)
+..+.||+....+..+ .+..+++ ++ +..+. ...+..|.
T Consensus 182 ~~pv~Iv~~~~~r~~~-------------l~v~vp~--~d--~~~~~---------~~~~~~~~---------------- 219 (1490)
T PRK09751 182 DRPVTVVNPPAMRHPQ-------------IRIVVPV--AN--MDDVS---------SVASGTGE---------------- 219 (1490)
T ss_pred CCCEEEECCCCCcccc-------------eEEEEec--Cc--hhhcc---------cccccccc----------------
Confidence 1123333321111100 0000000 00 00000 00000000
Q ss_pred EEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCC----------------
Q psy2371 392 ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNN---------------- 455 (816)
Q Consensus 392 v~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~g---------------- 455 (816)
+... .| ....|..+...+......++++||||||...+|.++..|++..
T Consensus 220 ---~~~~--~r----------~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~ 284 (1490)
T PRK09751 220 ---DSHA--GR----------EGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAH 284 (1490)
T ss_pred ---ccch--hh----------hhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhh
Confidence 0000 00 0111222222222222346789999999999999999997631
Q ss_pred -----------------CCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhH
Q psy2371 456 -----------------LPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEV 516 (816)
Q Consensus 456 -----------------i~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~ 516 (816)
+.+.++||.....++..+.++++.| +|+|||+.++||+||
T Consensus 285 ~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDI--------------------- 343 (1490)
T PRK09751 285 FESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDM--------------------- 343 (1490)
T ss_pred hhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCc---------------------
Confidence 1145678987777777777666555 799999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC-CCCceEEEEeccchhhhh
Q psy2371 517 KKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ-GDPGSSRFYLSLDDSLLK 584 (816)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq-GdpG~s~~~lsleD~l~~ 584 (816)
+.|. +||+++.|.|...|.||+|||||+ |..+.+.++....++++.
T Consensus 344 -----------------g~VD-----lVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle 390 (1490)
T PRK09751 344 -----------------GAVD-----LVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVD 390 (1490)
T ss_pred -----------------ccCC-----EEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHh
Confidence 4565 999999999999999999999997 333444555444455543
No 75
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=6.2e-25 Score=273.27 Aligned_cols=135 Identities=24% Similarity=0.247 Sum_probs=106.3
Q ss_pred HHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHH-HhcCCcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 71 EASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLN-SLSGQGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 71 ea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~-aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
+.-.+..|..|+++|..+++.++.|+ ++.|+||+|||+ |++|+... +..|..|+|++||++||.|.++.+..+...
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 33345688999999999999999998 899999999997 66776543 345788999999999999999999999999
Q ss_pred cCCeEE---EecCCCCHHHHHh------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 148 LGLSIG---VNSSEISHSLKKK------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 148 lglsv~---~i~~~~~~~~r~~------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
+|+.+. ++.|+++..++.. .-++||++|||+++ .+++. .+.. .++++||||||+|| +.+
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL-----~~~~~----~l~~-~~~~iVvDEaD~~L-~~~ 215 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFL-----SKNYD----ELGP-KFDFIFVDDVDALL-KAS 215 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----HHHHH----HhcC-CCCEEEEeChHhhh-hcc
Confidence 987754 4678888655432 12489999999987 33331 1111 79999999999999 543
No 76
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=3.4e-25 Score=244.74 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=79.0
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC--eEEEcCCch--HHHH---HHH-HHcCCCccEEEecCccccCccccCCCC
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP--HSVLNAKQH--KLEA---QII-AQAGHPKMITIATNMAGRGTDIILGGN 500 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~--~~vLnak~~--~rEa---~ii-~~Ag~~g~VtIATnmAGRGtDI~l~g~ 500 (816)
..++++||||+|++.++.++..|++.+.+ +..+||+.. +|++ +++ .+......|+||||+++||+||...
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~-- 297 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISAD-- 297 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCC--
Confidence 45788999999999999999999988774 889999853 3432 222 2333344799999999999999421
Q ss_pred chhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCce---EEEEec
Q psy2371 501 IDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGS---SRFYLS 577 (816)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~---s~~~ls 577 (816)
+||+...| ...|.||.||+||.|..+. ..+++.
T Consensus 298 ------------------------------------------~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~ 333 (358)
T TIGR01587 298 ------------------------------------------VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIIT 333 (358)
T ss_pred ------------------------------------------EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEe
Confidence 78887766 6789999999999987654 444444
Q ss_pred c
Q psy2371 578 L 578 (816)
Q Consensus 578 l 578 (816)
.
T Consensus 334 ~ 334 (358)
T TIGR01587 334 I 334 (358)
T ss_pred e
Confidence 3
No 77
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.92 E-value=2.6e-24 Score=259.90 Aligned_cols=289 Identities=16% Similarity=0.186 Sum_probs=188.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH-HhhhcCCeEEEecCCCCHHHHHhhcCCCEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV-LYNWLGLSIGVNSSEISHSLKKKSYEADITYG 175 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~-l~~~lglsv~~i~~~~~~~~r~~~y~~dI~yg 175 (816)
|++++||+|||.++.+|++.....+..+.|+.|+|+||.+.++.+.. +...+|.+||..+++.+. .....+|+|+
T Consensus 24 vv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~----~~~~t~I~v~ 99 (812)
T PRK11664 24 LLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK----VGPNTRLEVV 99 (812)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc----cCCCCcEEEE
Confidence 99999999999999999986544444799999999999999998854 445678899988776431 1124579999
Q ss_pred CCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhh
Q psy2371 176 TNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIK 255 (816)
Q Consensus 176 T~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~ 255 (816)
|||.| .++|.. +..+.++.++||||+|...++..- ... .+.++.+.+++
T Consensus 100 T~G~L-lr~l~~-------d~~L~~v~~IIlDEaHER~l~~Dl--------------~L~-ll~~i~~~lr~-------- 148 (812)
T PRK11664 100 TEGIL-TRMIQR-------DPELSGVGLVILDEFHERSLQADL--------------ALA-LLLDVQQGLRD-------- 148 (812)
T ss_pred ChhHH-HHHHhh-------CCCcCcCcEEEEcCCCccccccch--------------HHH-HHHHHHHhCCc--------
Confidence 99998 344332 235679999999999973222100 011 23333344432
Q ss_pred hhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhh
Q psy2371 256 KNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGL 335 (816)
Q Consensus 256 ~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GL 335 (816)
+-|.+++|+|.... . + + .+|. +..+|.. .| +.+
T Consensus 149 -----------------~lqlilmSATl~~~--~-l------~-~~~~-~~~~I~~----------~g-----r~~---- 181 (812)
T PRK11664 149 -----------------DLKLLIMSATLDND--R-L------Q-QLLP-DAPVIVS----------EG-----RSF---- 181 (812)
T ss_pred -----------------cceEEEEecCCCHH--H-H------H-HhcC-CCCEEEe----------cC-----ccc----
Confidence 24677888875432 1 1 1 1121 1111110 01 111
Q ss_pred hHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHH
Q psy2371 336 HQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEE 415 (816)
Q Consensus 336 hQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~ 415 (816)
.+++..+|.. ..+
T Consensus 182 ----------------------------------------------------pV~~~y~~~~---------------~~~ 194 (812)
T PRK11664 182 ----------------------------------------------------PVERRYQPLP---------------AHQ 194 (812)
T ss_pred ----------------------------------------------------cceEEeccCc---------------hhh
Confidence 0011111110 011
Q ss_pred HHH----HHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh---CCCCeEEEcCCchHHHHHHHHHcCC--CccEEEec
Q psy2371 416 KYQ----AILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK---NNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIAT 486 (816)
Q Consensus 416 K~~----ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~---~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIAT 486 (816)
++. .++..+.. ..+..+|||+++...++.+++.|.+ .++.+..|||.....|+..+-..+. ..+|+|||
T Consensus 195 ~~~~~v~~~l~~~l~--~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvAT 272 (812)
T PRK11664 195 RFDEAVARATAELLR--QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLAT 272 (812)
T ss_pred hHHHHHHHHHHHHHH--hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEec
Confidence 111 12222221 1235699999999999999999997 5888999999865544433333333 34799999
Q ss_pred CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcc------------
Q psy2371 487 NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRR------------ 554 (816)
Q Consensus 487 nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~r------------ 554 (816)
|+|.||+|| |+|. |||++.++...+
T Consensus 273 nIAErsLtI--------------------------------------p~V~-----~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 273 NIAETSLTI--------------------------------------EGIR-----LVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred chHHhcccc--------------------------------------cCce-----EEEECCCcccccccccCCcceeEE
Confidence 999999999 6776 999999876443
Q ss_pred ------hhhhhcCccCCCCCCceEEEEeccch
Q psy2371 555 ------IDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 555 ------id~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
.+.||.|||||. .||.+..+.+.++
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 689999999999 6999999887554
No 78
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=5.7e-24 Score=256.64 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=188.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH-HhhhcCCeEEEecCCCCHHHHHhhcCCCEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV-LYNWLGLSIGVNSSEISHSLKKKSYEADITYG 175 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~-l~~~lglsv~~i~~~~~~~~r~~~y~~dI~yg 175 (816)
|++++||+|||.++.+|++.....+..+.|+.|++++|.+.++.+.. +...+|.+||..+.+.+ ....+.+|+|+
T Consensus 21 Ii~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~----~~s~~t~I~v~ 96 (819)
T TIGR01970 21 VLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN----KVSRRTRLEVV 96 (819)
T ss_pred EEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc----ccCCCCcEEEE
Confidence 99999999999999999986654556899999999999999998854 44567888887766532 12235789999
Q ss_pred CCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhh
Q psy2371 176 TNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIK 255 (816)
Q Consensus 176 T~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~ 255 (816)
|+|.| .+.|.. +..+.++.++||||||...++... ... .+.++...+++
T Consensus 97 T~G~L-lr~l~~-------d~~L~~v~~VIiDEaHER~L~~Dl--------------~L~-ll~~i~~~lr~-------- 145 (819)
T TIGR01970 97 TEGIL-TRMIQD-------DPELDGVGALIFDEFHERSLDADL--------------GLA-LALDVQSSLRE-------- 145 (819)
T ss_pred CCcHH-HHHHhh-------CcccccCCEEEEeccchhhhccch--------------HHH-HHHHHHHhcCC--------
Confidence 99998 333322 235678999999999953324210 011 22333333432
Q ss_pred hhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhh
Q psy2371 256 KNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGL 335 (816)
Q Consensus 256 ~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GL 335 (816)
+.|.+++|+|..... + + .+|. +...|.. +|+.+
T Consensus 146 -----------------dlqlIlmSATl~~~~---l------~-~~l~-~~~vI~~---------------~gr~~---- 178 (819)
T TIGR01970 146 -----------------DLKILAMSATLDGER---L------S-SLLP-DAPVVES---------------EGRSF---- 178 (819)
T ss_pred -----------------CceEEEEeCCCCHHH---H------H-HHcC-CCcEEEe---------------cCcce----
Confidence 356778888754321 1 1 1121 1111100 01110
Q ss_pred hHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHH
Q psy2371 336 HQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEE 415 (816)
Q Consensus 336 hQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~ 415 (816)
.+++..+|.... +. -...
T Consensus 179 ----------------------------------------------------pVe~~y~~~~~~-------~~---~~~~ 196 (819)
T TIGR01970 179 ----------------------------------------------------PVEIRYLPLRGD-------QR---LEDA 196 (819)
T ss_pred ----------------------------------------------------eeeeEEeecchh-------hh---HHHH
Confidence 001111111000 00 0001
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh---CCCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccc
Q psy2371 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK---NNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAG 490 (816)
Q Consensus 416 K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~---~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAG 490 (816)
...++...+. . .+..+|||+++....+.+.+.|.+ .++.+..|||.....|+.-+-..+. ..+|+||||+|.
T Consensus 197 v~~~l~~~l~-~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAE 273 (819)
T TIGR01970 197 VSRAVEHALA-S--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAE 273 (819)
T ss_pred HHHHHHHHHH-h--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHh
Confidence 1122222222 1 234699999999999999999987 4788999999965444332323333 347999999999
Q ss_pred cCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcc----------------
Q psy2371 491 RGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRR---------------- 554 (816)
Q Consensus 491 RGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~r---------------- 554 (816)
||+|| |+|. +||++.+|...+
T Consensus 274 rgItI--------------------------------------p~V~-----~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 274 TSLTI--------------------------------------EGIR-----VVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hcccc--------------------------------------cCce-----EEEEcCcccccccccccCCceeeEEEEC
Confidence 99999 6776 999999986432
Q ss_pred --hhhhhcCccCCCCCCceEEEEeccch
Q psy2371 555 --IDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 555 --id~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
.+.||+|||||. .||.+..+.|.++
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 378999999999 8999999988654
No 79
>PRK13766 Hef nuclease; Provisional
Probab=99.92 E-value=6.7e-24 Score=257.21 Aligned_cols=127 Identities=21% Similarity=0.219 Sum_probs=98.9
Q ss_pred cccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhc--CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 79 MRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLS--GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~--g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
+.|.+-|......++.++ |+.++||.|||++|++++.. .+. +..|+|++||+.|+.|.++.+..++...+.++..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~-~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAE-RLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHH-HHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 467777877665445555 99999999999999998874 333 56799999999999998887777655445588888
Q ss_pred cCCCCHHHHHhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 156 SSEISHSLKKKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 156 ~~~~~~~~r~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.|+.++.+|...| +++|+++||..+..|.+... .....+.++||||||++.
T Consensus 93 ~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~-------~~~~~~~liVvDEaH~~~ 144 (773)
T PRK13766 93 TGEVSPEKRAELWEKAKVIVATPQVIENDLIAGR-------ISLEDVSLLIFDEAHRAV 144 (773)
T ss_pred eCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCC-------CChhhCcEEEEECCcccc
Confidence 9988887777777 68999999988755554332 345679999999999865
No 80
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=99.92 E-value=3e-25 Score=207.35 Aligned_cols=94 Identities=41% Similarity=0.737 Sum_probs=86.8
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI---------------- 292 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~---------------- 292 (816)
.++..|. .++++++.|.+ +.||.+|+++++++||+.|..+++++++
T Consensus 3 ~~~~~y~-~a~~~~~~L~~-----------------~~dy~vde~~~~v~LT~~G~~~~e~~~~~~~~l~~~~~~~~~~~ 64 (113)
T PF01043_consen 3 DSSNLYR-EADKFAKQLKE-----------------DEDYEVDEKQRTVELTEKGIEKAEKLLGISDNLYDEENSELYHH 64 (113)
T ss_dssp SCHHHHH-HHHHHHHHSHT-----------------TTSECECTSTTEEEESHHHHHHHHHHHTSSSSTTSTTCHHHHHH
T ss_pred hhHHHHH-HHHHHHHhCCC-----------------CCCEEEeCCCCeeeEhHHHHHHHHHHhhhcccccccccHHHHHH
Confidence 3456788 99999999986 6799999999999999999999999885
Q ss_pred -HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHh
Q psy2371 293 -KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALE 340 (816)
Q Consensus 293 -~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaie 340 (816)
.+||+|+++|++|+||||+||+|+|||+||||+|+|||||+|||||||
T Consensus 65 i~~AL~A~~l~~rd~dYiV~dg~V~IVDe~TGR~m~gRrws~GLHQaIE 113 (113)
T PF01043_consen 65 INQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRIMPGRRWSDGLHQAIE 113 (113)
T ss_dssp HHHHHHHHHCSTTTTSEEEETTEEEEBCTTTTSEBTT--STTTHHHHHH
T ss_pred HHHHHHHHHHHhCCcceEEEcCEEEEEECCCCCcCCCCcCCchhhHhhC
Confidence 999999999999999999999999999999999999999999999997
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.91 E-value=4e-23 Score=245.30 Aligned_cols=338 Identities=21% Similarity=0.161 Sum_probs=229.9
Q ss_pred HHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC--------CcEEEEeCcHHHHHHH
Q psy2371 68 VCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG--------QGVHIVTISDYLAKRD 137 (816)
Q Consensus 68 ~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g--------~~V~VvT~n~yLA~Rd 137 (816)
.++++.++. ...|+|+|..+++.+++|+ +.-++||+|||+||.||++-..+.. -.|+-|||=+.|+...
T Consensus 11 ~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 11 RVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 456666665 7899999999999999998 9999999999999999999543322 2367788999999998
Q ss_pred HHHHHHHhhhcCCeEEEecCCCCHHHHHhhc--CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhh
Q psy2371 138 AEWMSVLYNWLGLSIGVNSSEISHSLKKKSY--EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILID 215 (816)
Q Consensus 138 ~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y--~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiD 215 (816)
-..+....+.+|+.|.+-.|++++.+|+..- -+||++.||..|..-..-.++ ...++.+.|+||||+|.+...
T Consensus 90 ~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~-----r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKF-----RELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHH-----HHHhcCCcEEEeehhhhhhcc
Confidence 8888889999999999999999977765543 579999999998533222222 235678999999999998844
Q ss_pred ccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhh--HHHHHHHHHH
Q psy2371 216 EARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENG--YEKYENILIK 293 (816)
Q Consensus 216 ea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g--~~~~e~~l~~ 293 (816)
+-..-|.++= . .+..++. +-+.+-||+|. .+.+.+|+
T Consensus 165 KRG~~Lsl~L---------e-RL~~l~~-----------------------------~~qRIGLSATV~~~~~varfL-- 203 (814)
T COG1201 165 KRGVQLALSL---------E-RLRELAG-----------------------------DFQRIGLSATVGPPEEVAKFL-- 203 (814)
T ss_pred ccchhhhhhH---------H-HHHhhCc-----------------------------ccEEEeehhccCCHHHHHHHh--
Confidence 4332221111 0 1111111 12456676653 33444444
Q ss_pred HHHHHHHHhccCcceEEeCC-eEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcc
Q psy2371 294 MALRAHVLYHKNKHYIIKNN-KIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGM 372 (816)
Q Consensus 294 ~Al~A~~l~~~~~dYiV~d~-~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~Gm 372 (816)
.. .+ .+.||+..-++-
T Consensus 204 --------~g--------~~~~~~Iv~~~~~k~----------------------------------------------- 220 (814)
T COG1201 204 --------VG--------FGDPCEIVDVSAAKK----------------------------------------------- 220 (814)
T ss_pred --------cC--------CCCceEEEEcccCCc-----------------------------------------------
Confidence 21 11 233333211110
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
+.++ +..|... ..+. ..-+.+++..+.+..++.+.+||||||...+|.++..|+
T Consensus 221 --------------~~i~-v~~p~~~---------~~~~--~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~ 274 (814)
T COG1201 221 --------------LEIK-VISPVED---------LIYD--EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLK 274 (814)
T ss_pred --------------ceEE-EEecCCc---------cccc--cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHH
Confidence 1111 1222211 0011 112233344444444445689999999999999999999
Q ss_pred hCC-CCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHH
Q psy2371 453 KNN-LPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEW 529 (816)
Q Consensus 453 ~~g-i~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (816)
+.+ .+..+-||.-....+..+.++.+.| +++|||.-.--|+|| |+
T Consensus 275 ~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi---G~----------------------------- 322 (814)
T COG1201 275 KLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI---GD----------------------------- 322 (814)
T ss_pred HhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc---CC-----------------------------
Confidence 987 8999999986665555555655555 789999999999999 44
Q ss_pred HhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCC-ceEEEEeccchhhhh
Q psy2371 530 MLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDP-GSSRFYLSLDDSLLK 584 (816)
Q Consensus 530 ~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdp-G~s~~~lsleD~l~~ 584 (816)
|. .||++.-|.+.-.-.||+||+|++... -..++|..--||++.
T Consensus 323 ------vd-----lVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE 367 (814)
T COG1201 323 ------ID-----LVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLE 367 (814)
T ss_pred ------ce-----EEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHH
Confidence 33 899999999999999999999987655 445555544566665
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=2.8e-22 Score=222.80 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=83.2
Q ss_pred hhhhhccccCCc----eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhc----CCeEEEec
Q psy2371 85 QLIGGIALHYGN----ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWL----GLSIGVNS 156 (816)
Q Consensus 85 Q~~~~~~L~~G~----Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l----glsv~~i~ 156 (816)
|..+...+.+|. ++.++||+|||++|.+|++. .+..+.+++|++.|+.+.++.+..++..+ ++.+....
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~ 78 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVS 78 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence 667777777664 67999999999999999883 34468999999999999999888888654 66677666
Q ss_pred CCCCHHH--------------------HHh--hcCCCEEEECCCcchhhhhhhhhccCCC---ccccccceEEEecchhh
Q psy2371 157 SEISHSL--------------------KKK--SYEADITYGTNNEFGFDYLRDNMVFNSN---DRVQRKLNFVILDEIDS 211 (816)
Q Consensus 157 ~~~~~~~--------------------r~~--~y~~dI~ygT~~~l~fDyLrD~~~~~~~---~~~~r~~~~~IvDEaDs 211 (816)
|....+. |.. ...++|+.+||.- |+++.-+....+. ......+.++|+||+|.
T Consensus 79 g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~--l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 79 KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDI--FVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHH--HHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 6532220 111 1246677665644 4554322111111 11246899999999998
Q ss_pred h
Q psy2371 212 I 212 (816)
Q Consensus 212 ~ 212 (816)
.
T Consensus 157 ~ 157 (357)
T TIGR03158 157 Y 157 (357)
T ss_pred c
Confidence 4
No 83
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.3e-21 Score=225.46 Aligned_cols=319 Identities=18% Similarity=0.148 Sum_probs=229.2
Q ss_pred HHHHHhcccc-chhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 72 ASKRVLKMRH-FDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 72 a~~R~lg~~p-~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
..++++|+.- .+-|..++-.+++|+ |+-|+||.||||+|-+|+++. .| -++||+|=-.|=+-.-+. ....
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G-~TLVVSPLiSLM~DQV~~----l~~~ 80 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG-LTLVVSPLISLMKDQVDQ----LEAA 80 (590)
T ss_pred HHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC-CEEEECchHHHHHHHHHH----HHHc
Confidence 3567788644 467888888888887 999999999999999999964 45 467778766664432222 3456
Q ss_pred CCeEEEecCCCCHHHHHhhc------CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcce
Q psy2371 149 GLSIGVNSSEISHSLKKKSY------EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLI 222 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y------~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpli 222 (816)
|+.+.++.+.++.++++... ..+++|-+|-+|.-.+.++.+. .-++..++|||||.+. .=+.
T Consensus 81 Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~-------~~~i~l~vIDEAHCiS-qWGh---- 148 (590)
T COG0514 81 GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK-------RLPISLVAIDEAHCIS-QWGH---- 148 (590)
T ss_pred CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH-------hCCCceEEechHHHHh-hcCC----
Confidence 89999999998887776543 2599999999998777777663 3478899999999987 3210
Q ss_pred eccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHh
Q psy2371 223 ISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLY 302 (816)
Q Consensus 223 isg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~ 302 (816)
+-...|. .+-.+...++. -.-+.||+|-...+..-+
T Consensus 149 ------dFRP~Y~-~lg~l~~~~~~--------------------------~p~~AlTATA~~~v~~DI----------- 184 (590)
T COG0514 149 ------DFRPDYR-RLGRLRAGLPN--------------------------PPVLALTATATPRVRDDI----------- 184 (590)
T ss_pred ------ccCHhHH-HHHHHHhhCCC--------------------------CCEEEEeCCCChHHHHHH-----------
Confidence 0011255 44444444432 223455655444433222
Q ss_pred ccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHH
Q psy2371 303 HKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYE 382 (816)
Q Consensus 303 ~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e 382 (816)
T Consensus 185 -------------------------------------------------------------------------------- 184 (590)
T COG0514 185 -------------------------------------------------------------------------------- 184 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCe---EEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeE
Q psy2371 383 FQEIYKLE---TITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459 (816)
Q Consensus 383 ~~~~Y~l~---vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~ 459 (816)
.+..++. ++..-.++|+++-..-. ..+...+...|.+ ..+..++|.+|+|.|...+|.+++.|...|+...
T Consensus 185 -~~~L~l~~~~~~~~sfdRpNi~~~v~~--~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~ 258 (590)
T COG0514 185 -REQLGLQDANIFRGSFDRPNLALKVVE--KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAG 258 (590)
T ss_pred -HHHhcCCCcceEEecCCCchhhhhhhh--cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceE
Confidence 1111111 12223345544422110 1123344443332 2345678899999999999999999999999999
Q ss_pred EEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhh
Q psy2371 460 VLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVI 537 (816)
Q Consensus 460 vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 537 (816)
..||.....|++.+.+++..+ .|+|||+=+|-|+|- |+|.
T Consensus 259 ~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK--------------------------------------pdVR 300 (590)
T COG0514 259 AYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK--------------------------------------PDVR 300 (590)
T ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC--------------------------------------CCce
Confidence 999998888888888887765 799999999999999 6787
Q ss_pred ccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhh
Q psy2371 538 SSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 538 ~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l 582 (816)
+||++++|.|.+.|-|=+|||||-|.|-.+.++.|++|--
T Consensus 301 -----fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 301 -----FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred -----EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 9999999999999999999999999999999999999953
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.88 E-value=1.6e-21 Score=240.68 Aligned_cols=123 Identities=24% Similarity=0.208 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhhc-cCCCcEEEEEcccHhHHHHHHHHHhCCCC---eEEEcCCchHHHHHHHHHcCCCccEEEecCcc
Q psy2371 414 EEKYQAILMDIKNCY-IKEQPVLVGTTSIENSELLSNILKKNNLP---HSVLNAKQHKLEAQIIAQAGHPKMITIATNMA 489 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~-~~grpVLVft~si~~se~Ls~~L~~~gi~---~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmA 489 (816)
.++..+++..+...+ .....||||+++.+..+.+++.|.+.+++ +..|||.....|+.-+-+.....+|+||||+|
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIA 347 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHH
Confidence 445566665554332 23346999999999999999999998887 45689986655554333333345899999999
Q ss_pred ccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEec---------------CC---C
Q psy2371 490 GRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTE---------------RH---E 551 (816)
Q Consensus 490 GRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te---------------~p---e 551 (816)
+||+|| |+|. |||++. +| -
T Consensus 348 EtSITI--------------------------------------pgI~-----yVID~Gl~k~~~Yd~~~~~~~Lp~~~i 384 (1294)
T PRK11131 348 ETSLTV--------------------------------------PGIK-----YVIDPGTARISRYSYRTKVQRLPIEPI 384 (1294)
T ss_pred hhcccc--------------------------------------Ccce-----EEEECCCccccccccccCcccCCeeec
Confidence 999999 6776 999985 33 4
Q ss_pred CcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 552 SRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 552 s~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|...++||.|||||. .||.+..++|.+|
T Consensus 385 Skasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 385 SQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred CHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 557899999999999 7999999998765
No 85
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.7e-20 Score=207.37 Aligned_cols=417 Identities=21% Similarity=0.178 Sum_probs=233.0
Q ss_pred ccchhhhh-hhccccCCceeeecCCCCchHHHHHHHHH-HHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 80 RHFDVQLI-GGIALHYGNISEMQTGEGKTLVATLAAYL-NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 80 ~p~~VQ~~-~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l-~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
.|..=|.. +.-+|.++.++-++||=|||.+++|-+.- ....|..+++++||.=|..|-++.+..+...-.-.++.++|
T Consensus 15 e~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltG 94 (542)
T COG1111 15 EPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG 94 (542)
T ss_pred cHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecC
Confidence 34444544 33455555699999999999998887752 12234479999999999999777555443333335668899
Q ss_pred CCCHHHHHhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh------------hhccCCcceec
Q psy2371 158 EISHSLKKKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL------------IDEARTPLIIS 224 (816)
Q Consensus 158 ~~~~~~r~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L------------iDea~tpliis 224 (816)
..+|++|...| ...|+++||--+..|.+.- .+....+.++|+||||+-- +-.+..|+|+.
T Consensus 95 ev~p~~R~~~w~~~kVfvaTPQvveNDl~~G-------rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 95 EVRPEEREELWAKKKVFVATPQVVENDLKAG-------RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred CCChHHHHHHHhhCCEEEeccHHHHhHHhcC-------ccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 99999999888 5799999998886555432 3456789999999999742 24477899987
Q ss_pred ccc-ccchhhhHHHHhhHhhhccchhhh-hhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHh
Q psy2371 225 GEI-KNNAQYFYKIINPIPKLLVPEIDT-KNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLY 302 (816)
Q Consensus 225 g~~-~~~~~~y~~~i~~iv~~L~~~~~~-~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~ 302 (816)
=.+ |+++. . .|.+++..|--..-+ -++...+-.++-...... --.|-|++. +..+.+.| ..+++-..-.
T Consensus 168 LTASPGs~~--e-kI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve----~ikV~lp~e-~~~ir~~l-~~~l~~~Lk~ 238 (542)
T COG1111 168 LTASPGSDL--E-KIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVE----WIKVDLPEE-IKEIRDLL-RDALKPRLKP 238 (542)
T ss_pred EecCCCCCH--H-HHHHHHHhCCcceEEEecCCCccHHHhhccceeE----EEeccCcHH-HHHHHHHH-HHHHHHHHHH
Confidence 432 22221 2 566677766310000 000000000000000000 011234443 33444445 4444432222
Q ss_pred ccCcceEEeCCeEEEeeccccc----cc----ccccchh--------hhhHHHhccccceeccCccccccchhhhHHh-h
Q psy2371 303 HKNKHYIIKNNKIIIVDEFTGR----LM----KTRRWAE--------GLHQALEAKENLEIQNETQTLASITFQNYFR-M 365 (816)
Q Consensus 303 ~~~~dYiV~d~~v~ivD~~tGr----~~----~grr~s~--------GLhQaieaKe~v~i~~e~~tla~It~q~~f~-~ 365 (816)
-++.-++.-.+.+-..|-+.-+ .| ++-.|.- -+++|+|.-| ++ +-.++-+|++ +
T Consensus 239 L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elle-------tq--Gi~~~~~Yl~~l 309 (542)
T COG1111 239 LKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLE-------TQ--GIRPFYQYLEKL 309 (542)
T ss_pred HHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH-------hh--ChHHHHHHHHHH
Confidence 2333333333222222222111 00 1111111 1122222211 11 1112233433 3
Q ss_pred hcchh-cccccccchHHHHHHHhcCeEEEcCCCCcc----ccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcc
Q psy2371 366 YKKIS-GMTGTAETEAYEFQEIYKLETITVPPNKIN----KRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTS 440 (816)
Q Consensus 366 Y~~l~-GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~----~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~s 440 (816)
+..-. |-++-+..-. .. |..++. .+.+..+ +--.+-++...++.+..+.. .+..|+|||+.
T Consensus 310 ~e~~~~~~sk~a~~l~---~d---------~~~~~al~~~~~~~~~~-v~HPKl~~l~eilke~~~k~-~~~RvIVFT~y 375 (542)
T COG1111 310 EEEATKGGSKAAKSLL---AD---------PYFKRALRLLIRADESG-VEHPKLEKLREILKEQLEKN-GDSRVIVFTEY 375 (542)
T ss_pred HHHhcccchHHHHHHh---cC---------hhhHHHHHHHHHhcccc-CCCccHHHHHHHHHHHHhcC-CCceEEEEehh
Confidence 32211 2222222211 00 000100 0111111 11113345555555555443 34679999999
Q ss_pred cHhHHHHHHHHHhCCCCeE-EEcC-------C-chHHHH-HHHH-HcCCCccEEEecCccccCccccCCCCchhhHHHhh
Q psy2371 441 IENSELLSNILKKNNLPHS-VLNA-------K-QHKLEA-QIIA-QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIK 509 (816)
Q Consensus 441 i~~se~Ls~~L~~~gi~~~-vLna-------k-~~~rEa-~ii~-~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~ 509 (816)
.+.+|.+.+.|.+.|+..- ..-| + ..+.|. ++|. ++-+...|+|||.++--|+||
T Consensus 376 RdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI-------------- 441 (542)
T COG1111 376 RDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI-------------- 441 (542)
T ss_pred HhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCC--------------
Confidence 9999999999999998774 2222 1 334443 4444 444456899999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccc
Q psy2371 510 KNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLD 579 (816)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsle 579 (816)
|+|. .||-||.-.|.=-.+||+|||||+ ++|....+++-.
T Consensus 442 ------------------------p~vD-----lVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 442 ------------------------PEVD-----LVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ------------------------Cccc-----EEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 6777 999999999999999999999999 999998888765
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.86 E-value=3.6e-20 Score=221.27 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=95.5
Q ss_pred ccccchhhhhhhccccCC---c--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 78 KMRHFDVQLIGGIALHYG---N--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G---~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
...+++.|..++..+.++ + ++.+.||+|||.+|+.++......|++|+|++|+.+||.|..+.+.. .+|.++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~---~fg~~v 218 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRA---RFGAPV 218 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCCE
Confidence 346789999988777653 3 89999999999999888765445688999999999999998887664 468999
Q ss_pred EEecCCCCHHHHHhhc------CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 153 GVNSSEISHSLKKKSY------EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y------~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+++.++++..+|...+ .++|++||++.+ | ...+.+.++||||+|...
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~-------------~p~~~l~liVvDEeh~~s 271 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-F-------------LPFKNLGLIIVDEEHDSS 271 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-c-------------ccccCCCEEEEECCCccc
Confidence 9999999877665432 579999999886 2 123578999999999755
No 87
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.85 E-value=2.8e-20 Score=208.02 Aligned_cols=333 Identities=23% Similarity=0.265 Sum_probs=230.6
Q ss_pred cchh-hHHHHHHHHHHHHHHhcc-ccchhhhhhhc-cccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcH
Q psy2371 58 LDSI-LPKAFSVCREASKRVLKM-RHFDVQLIGGI-ALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISD 131 (816)
Q Consensus 58 ld~~-l~ea~a~vrea~~R~lg~-~p~~VQ~~~~~-~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~ 131 (816)
+|++ +||-|.-+- ++ .|. ...|||.+|+- -|++|. ++-..|++||||+.-|+-+.++|. |+..+.++|--
T Consensus 196 vdeLdipe~fk~~l---k~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLV 271 (830)
T COG1202 196 VDELDIPEKFKRML---KR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLV 271 (830)
T ss_pred ccccCCcHHHHHHH---Hh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhH
Confidence 4444 577665442 22 233 56899999985 477887 899999999999999999999998 78899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHH------hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEE
Q psy2371 132 YLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKK------KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVI 205 (816)
Q Consensus 132 yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~I 205 (816)
.||.|-++.|..=|..||++|.+-+|-.-...+. -.-++||++||=- |+|||..- ...+..+..+|
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYE--GiD~lLRt------g~~lgdiGtVV 343 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYE--GIDYLLRT------GKDLGDIGTVV 343 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeech--hHHHHHHc------CCcccccceEE
Confidence 9999999999999999999998877743222221 1236899999985 67998642 14567899999
Q ss_pred ecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHH
Q psy2371 206 LDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYE 285 (816)
Q Consensus 206 vDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~ 285 (816)
|||+|.+= |+-|-| .++-++..|+.- -++.+-+
T Consensus 344 IDEiHtL~-deERG~----------------RLdGLI~RLr~l----------------------~~~AQ~i-------- 376 (830)
T COG1202 344 IDEIHTLE-DEERGP----------------RLDGLIGRLRYL----------------------FPGAQFI-------- 376 (830)
T ss_pred eeeeeecc-chhccc----------------chhhHHHHHHHh----------------------CCCCeEE--------
Confidence 99999865 655532 444444444320 0012223
Q ss_pred HHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhh
Q psy2371 286 KYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRM 365 (816)
Q Consensus 286 ~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~ 365 (816)
T Consensus 377 -------------------------------------------------------------------------------- 376 (830)
T COG1202 377 -------------------------------------------------------------------------------- 376 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEe-cChHHHHHHHHHHHHhhcc-------CCCcEEEE
Q psy2371 366 YKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIY-KTMEEKYQAILMDIKNCYI-------KEQPVLVG 437 (816)
Q Consensus 366 Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~-~t~~~K~~ai~~~i~~~~~-------~grpVLVf 437 (816)
|+++|.++ .+|+.+..|...|.- ..+|+- .+. .++| .++.+||+-|.+.++.-.. .|| .|||
T Consensus 377 -----~LSATVgN-p~elA~~l~a~lV~y-~~RPVp-lEr-Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQ-tIVF 446 (830)
T COG1202 377 -----YLSATVGN-PEELAKKLGAKLVLY-DERPVP-LER-HLVFARNESEKWDIIARLVKREFSTESSKGYRGQ-TIVF 446 (830)
T ss_pred -----EEEeecCC-hHHHHHHhCCeeEee-cCCCCC-hhH-eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCc-eEEE
Confidence 34444444 223444444443221 122211 111 3444 5589999988877764322 455 8999
Q ss_pred EcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhh
Q psy2371 438 TTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSE 515 (816)
Q Consensus 438 t~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~ 515 (816)
|+|...++.||..|...|++....||.....|+..+..++..+ ++.|+|--.|=|+|++-+ +
T Consensus 447 T~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPAS---Q------------- 510 (830)
T COG1202 447 TYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPAS---Q------------- 510 (830)
T ss_pred ecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchH---H-------------
Confidence 9999999999999999999999999998888887777655544 789999999999999622 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC--CCceEEEEecc
Q psy2371 516 VKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG--DPGSSRFYLSL 578 (816)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG--dpG~s~~~lsl 578 (816)
.+. +. .-.|.+ --|.+.+.|..|||||-| |.|....++-+
T Consensus 511 -----VIF----------Es-------LaMG~~-WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 511 -----VIF----------ES-------LAMGIE-WLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred -----HHH----------HH-------HHcccc-cCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 000 00 112333 467999999999999976 67777666644
No 88
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=7.3e-19 Score=214.25 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHH-HhCCCCeEEEcCCch--HHHHHHHHHcCC--CccEEEecCc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNIL-KKNNLPHSVLNAKQH--KLEAQIIAQAGH--PKMITIATNM 488 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L-~~~gi~~~vLnak~~--~rEa~ii~~Ag~--~g~VtIATnm 488 (816)
..|...+++.+... .+.+|||||++++.+..|++.| ...|+++.++||+.. +|++.+-.++.. ...|+|||++
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 45777788776543 3678999999999999999999 567999999999854 555555556543 3579999999
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
+|||+|+ +.+. ||||+|+|.|+..|.||+||+||.|.
T Consensus 556 gseGlNl--------------------------------------q~a~-----~VInfDlP~nP~~~eQRIGR~~RiGQ 592 (956)
T PRK04914 556 GSEGRNF--------------------------------------QFAS-----HLVLFDLPFNPDLLEQRIGRLDRIGQ 592 (956)
T ss_pred hccCCCc--------------------------------------cccc-----EEEEecCCCCHHHHHHHhcccccCCC
Confidence 9999999 3454 99999999999999999999999999
Q ss_pred CceEEEEec
Q psy2371 569 PGSSRFYLS 577 (816)
Q Consensus 569 pG~s~~~ls 577 (816)
.|....|+.
T Consensus 593 ~~~V~i~~~ 601 (956)
T PRK04914 593 KHDIQIHVP 601 (956)
T ss_pred CceEEEEEc
Confidence 999877774
No 89
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=5.7e-20 Score=217.57 Aligned_cols=328 Identities=16% Similarity=0.141 Sum_probs=189.8
Q ss_pred cchhhhhhhcccc-CCc----eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 81 HFDVQLIGGIALH-YGN----ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 81 p~~VQ~~~~~~L~-~G~----Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
++|=|..|+-.+. +|+ |..|+||.|||++++..+. .+ ++.++|||||..|..|=.+++..+...-...++..
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~--~l-~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~ 332 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC--TV-KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRF 332 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH--Hh-CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 4455777765543 342 8999999999999886654 23 57899999999999985555554433333456666
Q ss_pred cCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhc-cCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhh
Q psy2371 156 SSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMV-FNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYF 234 (816)
Q Consensus 156 ~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~-~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y 234 (816)
.|+... + ..-.++|+++|..-+..+.=+..-. ...+.+..+.+.++|+||||.+-.. .|
T Consensus 333 tg~~k~--~-~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-----------------~f 392 (732)
T TIGR00603 333 TSDAKE--R-FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-----------------MF 392 (732)
T ss_pred ecCccc--c-cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-----------------HH
Confidence 554211 1 0113789999997654321111000 0001222357889999999987411 13
Q ss_pred HHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCe
Q psy2371 235 YKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNK 314 (816)
Q Consensus 235 ~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~ 314 (816)
. +++..+.. ...+-||+|-... |++
T Consensus 393 r----~il~~l~a--------------------------~~RLGLTATP~Re-------------------------D~~ 417 (732)
T TIGR00603 393 R----RVLTIVQA--------------------------HCKLGLTATLVRE-------------------------DDK 417 (732)
T ss_pred H----HHHHhcCc--------------------------CcEEEEeecCccc-------------------------CCc
Confidence 3 34444432 3346677764321 111
Q ss_pred EEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEc
Q psy2371 315 IIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITV 394 (816)
Q Consensus 315 v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~I 394 (816)
+..++..-|-......|.+-..+ |. ++... .++-.+.||. ++...|- ..
T Consensus 418 ~~~L~~LiGP~vye~~~~eLi~~------G~--------LA~~~------~~ev~v~~t~-------~~~~~yl----~~ 466 (732)
T TIGR00603 418 ITDLNFLIGPKLYEANWMELQKK------GF--------IANVQ------CAEVWCPMTP-------EFYREYL----RE 466 (732)
T ss_pred hhhhhhhcCCeeeecCHHHHHhC------Cc--------cccce------EEEEEecCCH-------HHHHHHH----Hh
Confidence 11111112222223344432211 10 00000 0111122221 1112220 00
Q ss_pred CCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHH
Q psy2371 395 PPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIA 474 (816)
Q Consensus 395 Pt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~ 474 (816)
+++ ....++.....|+.++...+......|.++||||.+++.++.++..| | +.+++|+....|+.-+-
T Consensus 467 -~~~------~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il 534 (732)
T TIGR00603 467 -NSR------KRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQIL 534 (732)
T ss_pred -cch------hhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHH
Confidence 000 00123445567888766655432246889999999999999999888 3 34689986655554444
Q ss_pred HcCC---CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCC-
Q psy2371 475 QAGH---PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERH- 550 (816)
Q Consensus 475 ~Ag~---~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~p- 550 (816)
++++ .-.++|+|+++++|+|+ |++. +||+.+.|
T Consensus 535 ~~Fr~~~~i~vLv~SkVgdeGIDl--------------------------------------P~a~-----vvI~~s~~~ 571 (732)
T TIGR00603 535 QNFQHNPKVNTIFLSKVGDTSIDL--------------------------------------PEAN-----VLIQISSHY 571 (732)
T ss_pred HHHHhCCCccEEEEecccccccCC--------------------------------------CCCC-----EEEEeCCCC
Confidence 4443 34789999999999999 5666 99999988
Q ss_pred CCcchhhhhcCccCCCCCCceE
Q psy2371 551 ESRRIDNQLRGRSGRQGDPGSS 572 (816)
Q Consensus 551 es~rid~Q~~GRtGRqGdpG~s 572 (816)
.|++.|.||.||++|.+..|.+
T Consensus 572 gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 572 GSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred CCHHHHHHHhcccccCCCCCcc
Confidence 4999999999999999988874
No 90
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=9.7e-20 Score=225.59 Aligned_cols=122 Identities=26% Similarity=0.300 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhhcc-CCCcEEEEEcccHhHHHHHHHHHhCCCC---eEEEcCCchHHHHHHHHHcCCCccEEEecCccc
Q psy2371 415 EKYQAILMDIKNCYI-KEQPVLVGTTSIENSELLSNILKKNNLP---HSVLNAKQHKLEAQIIAQAGHPKMITIATNMAG 490 (816)
Q Consensus 415 ~K~~ai~~~i~~~~~-~grpVLVft~si~~se~Ls~~L~~~gi~---~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAG 490 (816)
++..+++..+.+.+. ....||||+++....+.+++.|.+.+.+ +..|||.....|..-+-..+...+|+||||+|.
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAE 341 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAE 341 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHH
Confidence 345555555544332 2346999999999999999999987654 667899866555543333332348999999999
Q ss_pred cCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCC------------------C
Q psy2371 491 RGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHE------------------S 552 (816)
Q Consensus 491 RGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pe------------------s 552 (816)
||+|| |+|. |||++.++. |
T Consensus 342 tSLTI--------------------------------------pgV~-----yVIDsGl~r~~~yd~~~~~~~L~~~~IS 378 (1283)
T TIGR01967 342 TSLTV--------------------------------------PGIH-----YVIDTGTARISRYSYRTKVQRLPIEPIS 378 (1283)
T ss_pred hcccc--------------------------------------CCee-----EEEeCCCccccccccccCccccCCccCC
Confidence 99999 6776 999998543 5
Q ss_pred cchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 553 RRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 553 ~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
...++||.|||||.| ||.+.-+.|-+|
T Consensus 379 kasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 379 QASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred HHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 568999999999999 999998888665
No 91
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.82 E-value=3.8e-19 Score=215.83 Aligned_cols=330 Identities=19% Similarity=0.143 Sum_probs=224.4
Q ss_pred HHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCc--EEEEeCcHHHHHHHHHHHHHHh
Q psy2371 70 REASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQG--VHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 70 rea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~--V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
..+....+..++|.-|..|.-.+++|+ |+...||||||++|.+|++.++|.+.. ++++.||..||.-..+.+..+.
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 334444455679999999999999998 999999999999999999998888765 5999999999999999999999
Q ss_pred hhcC--CeEEEecCCCCHHHHHhhc--CCCEEEECCCcchhhh--hhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 146 NWLG--LSIGVNSSEISHSLKKKSY--EADITYGTNNEFGFDY--LRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 146 ~~lg--lsv~~i~~~~~~~~r~~~y--~~dI~ygT~~~l~fDy--LrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
..+| ++++...|+.++++|+..| .|||++++|-=+ +| |+..-. -....+.++|+||||+|.- +..
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdML--h~~llr~~~~---~~~~~~~Lk~lVvDElHtY--rGv-- 210 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDML--HYLLLRNHDA---WLWLLRNLKYLVVDELHTY--RGV-- 210 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHH--HHHhccCcch---HHHHHhcCcEEEEecceec--ccc--
Confidence 9888 8888889999888886555 689999888544 44 333211 1122356999999999963 221
Q ss_pred cceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHH
Q psy2371 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAH 299 (816)
Q Consensus 220 pliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~ 299 (816)
|-..+.-+++.|.. .+ +
T Consensus 211 --------------~GS~vA~llRRL~~------------------------------------------~~-------~ 227 (851)
T COG1205 211 --------------QGSEVALLLRRLLR------------------------------------------RL-------R 227 (851)
T ss_pred --------------chhHHHHHHHHHHH------------------------------------------HH-------h
Confidence 11122223333321 00 0
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
. + +.+ +.+..+|+|.++.
T Consensus 228 ~-~------------------------------------------------~~~-------------~q~i~~SAT~~np 245 (851)
T COG1205 228 R-Y------------------------------------------------GSP-------------LQIICTSATLANP 245 (851)
T ss_pred c-c------------------------------------------------CCC-------------ceEEEEeccccCh
Confidence 0 0 000 1123345666665
Q ss_pred HHHHHHHhcCeEEE-cCCCCccccccCcCeEecC---------hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHH-
Q psy2371 380 AYEFQEIYKLETIT-VPPNKINKRKDLQDKIYKT---------MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLS- 448 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~-IPt~~p~~r~d~~d~v~~t---------~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls- 448 (816)
.+-..+..+.++.. |+-.. ..+-...-.++.. ...++..+...+......|...|+||.|...+|.+.
T Consensus 246 ~e~~~~l~~~~f~~~v~~~g-~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~ 324 (851)
T COG1205 246 GEFAEELFGRDFEVPVDEDG-SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYL 324 (851)
T ss_pred HHHHHHhcCCcceeeccCCC-CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhh
Confidence 55455555655544 33211 1111100111111 224555555555556678899999999999999997
Q ss_pred ---HHHHhCC----CCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHH
Q psy2371 449 ---NILKKNN----LPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKK 519 (816)
Q Consensus 449 ---~~L~~~g----i~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~ 519 (816)
..+...+ ..+.+..|..+..|+..+....+.| .+.||||.+-=|+|| |
T Consensus 325 ~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgidi---G-------------------- 381 (851)
T COG1205 325 SPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDI---G-------------------- 381 (851)
T ss_pred chhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceee---h--------------------
Confidence 5555555 4567777888888877666555544 689999999999999 2
Q ss_pred HHHHHHHHHHHhhhhhhhccCceEEEEecCCC-CcchhhhhcCccCCCCCCceEEEEec
Q psy2371 520 NKIKKLKNEWMLLHDKVISSGGLHIIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYLS 577 (816)
Q Consensus 520 ~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pe-s~rid~Q~~GRtGRqGdpG~s~~~ls 577 (816)
++ ..||.+-.|. +.-.++|+.||+||.|+.+-....+.
T Consensus 382 ---------------~l-----davi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 382 ---------------SL-----DAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ---------------hh-----hhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 22 3789999999 88999999999999995555444444
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.2e-18 Score=201.67 Aligned_cols=101 Identities=25% Similarity=0.250 Sum_probs=78.3
Q ss_pred eeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CC
Q psy2371 98 SEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EA 170 (816)
Q Consensus 98 aem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~ 170 (816)
..+.||+|||++|...+. .++ .|++|+|++|+..|+.|.++.+.. .+|.++.+..++++..+|...+ .+
T Consensus 2 L~g~TGsGKT~v~l~~i~-~~l~~g~~vLvlvP~i~L~~Q~~~~l~~---~f~~~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIE-KVLALGKSVLVLVPEIALTPQMIQRFKY---RFGSQVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred ccCCCCCCHHHHHHHHHH-HHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 467999999999965544 444 588999999999999998876654 4688999999998877664432 47
Q ss_pred CEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 171 DITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 171 dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
+|++||++.+ | .....+..+||||+|......
T Consensus 78 ~IVVGTrsal-f-------------~p~~~l~lIIVDEeh~~sykq 109 (505)
T TIGR00595 78 LVVIGTRSAL-F-------------LPFKNLGLIIVDEEHDSSYKQ 109 (505)
T ss_pred CEEECChHHH-c-------------CcccCCCEEEEECCCcccccc
Confidence 9999999876 2 123578999999999766443
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.80 E-value=7.5e-18 Score=204.25 Aligned_cols=327 Identities=16% Similarity=0.130 Sum_probs=187.6
Q ss_pred ccccchhhhhhhccc-cCCc-eeeecCCCCchHHHHHHHHHHHhcC--CcEEEEeCcHHHHHHHHHHHHHHhhhc--CCe
Q psy2371 78 KMRHFDVQLIGGIAL-HYGN-ISEMQTGEGKTLVATLAAYLNSLSG--QGVHIVTISDYLAKRDAEWMSVLYNWL--GLS 151 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L-~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e~~~~l~~~l--gls 151 (816)
|.+|+|+|..+.-.. ..|. |.+++||+|||.++++++...+-.| .++.+..||..+|.+-++.+..+++.+ ..+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 678999999875322 2344 9999999999999888776433334 589999999999988888877665533 355
Q ss_pred EEEecCCCCHH-----------------------------HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccc-
Q psy2371 152 IGVNSSEISHS-----------------------------LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKL- 201 (816)
Q Consensus 152 v~~i~~~~~~~-----------------------------~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~- 201 (816)
+++..|..... .++...-++|++||.-.+-.-.|.- .....|.+
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~------kh~~lR~~~ 437 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPV------KHRFIRGFG 437 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHcc------chHHHHHHh
Confidence 66665432100 1223345799999997663222211 11233444
Q ss_pred ---eEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEE
Q psy2371 202 ---NFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVF 278 (816)
Q Consensus 202 ---~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~ 278 (816)
.++||||||.. |.- ... .+..+++.+... ....++
T Consensus 438 La~svvIiDEVHAy--D~y---------------m~~-lL~~~L~~l~~~------------------------g~~vIl 475 (878)
T PRK09694 438 LGRSVLIVDEVHAY--DAY---------------MYG-LLEAVLKAQAQA------------------------GGSVIL 475 (878)
T ss_pred hccCeEEEechhhC--CHH---------------HHH-HHHHHHHHHHhc------------------------CCcEEE
Confidence 48999999985 421 011 334444443220 245788
Q ss_pred echhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccch
Q psy2371 279 LTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASIT 358 (816)
Q Consensus 279 lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It 358 (816)
||+|-.....+-+ +.| |. +.. .+.. +.
T Consensus 476 lSATLP~~~r~~L----~~a---~~---------~~~------------------------------~~~~-~~------ 502 (878)
T PRK09694 476 LSATLPATLKQKL----LDT---YG---------GHD------------------------------PVEL-SS------ 502 (878)
T ss_pred EeCCCCHHHHHHH----HHH---hc---------ccc------------------------------cccc-cc------
Confidence 9999776655433 111 10 000 0000 00
Q ss_pred hhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCC---CccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEE
Q psy2371 359 FQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPN---KINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVL 435 (816)
Q Consensus 359 ~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~---~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVL 435 (816)
.|+.+...++. +...+.++++ .|..+.-.-.........--.++++.+.+....|.+||
T Consensus 503 ------~YPlvt~~~~~------------~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vL 564 (878)
T PRK09694 503 ------AYPLITWRGVN------------GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVC 564 (878)
T ss_pred ------ccccccccccc------------cceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEE
Confidence 01111000000 0000111111 01111000000000100111245555555445788999
Q ss_pred EEEcccHhHHHHHHHHHhCC---CCeEEEcCCch--HH---HHHHHHH---cCCC--ccEEEecCccccCccccCCCCch
Q psy2371 436 VGTTSIENSELLSNILKKNN---LPHSVLNAKQH--KL---EAQIIAQ---AGHP--KMITIATNMAGRGTDIILGGNID 502 (816)
Q Consensus 436 Vft~si~~se~Ls~~L~~~g---i~~~vLnak~~--~r---Ea~ii~~---Ag~~--g~VtIATnmAGRGtDI~l~g~~~ 502 (816)
|||||++.++.+++.|++.+ .++.++|++.. .| |.+++.. .|.. +.|+|||+++.||+||...
T Consensus 565 Vf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~D---- 640 (878)
T PRK09694 565 LICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDFD---- 640 (878)
T ss_pred EEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCCC----
Confidence 99999999999999999875 67899999843 23 3344443 2322 5799999999999999432
Q ss_pred hhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCC
Q psy2371 503 SYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDP 569 (816)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdp 569 (816)
.||....| ...++||.||+||.|++
T Consensus 641 ----------------------------------------vlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 641 ----------------------------------------WLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred ----------------------------------------eEEECCCC--HHHHHHHHhccCCCCCC
Confidence 45554445 56899999999999863
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.78 E-value=1.6e-17 Score=191.86 Aligned_cols=269 Identities=22% Similarity=0.260 Sum_probs=186.8
Q ss_pred HHHhccccchhhhhhhcccc--------CCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 74 KRVLKMRHFDVQLIGGIALH--------YGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 74 ~R~lg~~p~~VQ~~~~~~L~--------~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
.+.|.+.+|.-|..++-.+. -.|+.|+.-|||||+|++++++...-.|.++-+++||.-||.|-++.+..++
T Consensus 256 ~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 256 LAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred HHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHh
Confidence 34577899999999886653 2358999999999999999999888899999999999999999999999999
Q ss_pred hhcCCeEEEecCCCCHHHHHhhc------CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 146 NWLGLSIGVNSSEISHSLKKKSY------EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
..+||+|++++|.+...+|++.. ..||++||..=| .|. ....++.++||||=|+.=.-..
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~-------V~F~~LgLVIiDEQHRFGV~QR-- 401 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDK-------VEFHNLGLVIIDEQHRFGVHQR-- 401 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcc-------eeecceeEEEEeccccccHHHH--
Confidence 99999999999999876665543 479999999765 343 3456899999999999753210
Q ss_pred cceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHH
Q psy2371 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAH 299 (816)
Q Consensus 220 pliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~ 299 (816)
..|... +.. .-..+.+|+|.+.+ ..|+.+.
T Consensus 402 -----------------------~~L~~K----------------G~~-----~Ph~LvMTATPIPR------TLAlt~f 431 (677)
T COG1200 402 -----------------------LALREK----------------GEQ-----NPHVLVMTATPIPR------TLALTAF 431 (677)
T ss_pred -----------------------HHHHHh----------------CCC-----CCcEEEEeCCCchH------HHHHHHh
Confidence 011110 000 12456778887665 3344442
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
- |=.|.++|+-
T Consensus 432 g-----------DldvS~IdEl---------------------------------------------------------- 442 (677)
T COG1200 432 G-----------DLDVSIIDEL---------------------------------------------------------- 442 (677)
T ss_pred c-----------cccchhhccC----------------------------------------------------------
Confidence 2 2123333331
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHH--------HHHHHH
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSE--------LLSNIL 451 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se--------~Ls~~L 451 (816)
|+. |+.-...+.. .++...+++.|.+...+|+.+-+.|+=++.|| .++..|
T Consensus 443 ---------------P~G----RkpI~T~~i~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L 501 (677)
T COG1200 443 ---------------PPG----RKPITTVVIP--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEEL 501 (677)
T ss_pred ---------------CCC----CCceEEEEec--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHH
Confidence 221 1110011111 12333445555544568999999999998887 445666
Q ss_pred HhC--CCCeEEEcCCchH--HHHHHHHHcCCCccEEEecCccccCcccc
Q psy2371 452 KKN--NLPHSVLNAKQHK--LEAQIIAQAGHPKMITIATNMAGRGTDII 496 (816)
Q Consensus 452 ~~~--gi~~~vLnak~~~--rEa~ii~~Ag~~g~VtIATnmAGRGtDI~ 496 (816)
+.. ++.+.++||+... +++.+-+|+.+...|+|||.+--=|+|++
T Consensus 502 ~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 502 KSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 643 5678999999664 44555555555678999999999999994
No 95
>KOG0349|consensus
Probab=99.75 E-value=1.4e-17 Score=181.36 Aligned_cols=302 Identities=17% Similarity=0.179 Sum_probs=188.5
Q ss_pred cEEEEeCcHHHHHHHHHHHHHHhhhc---CCeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccc
Q psy2371 123 GVHIVTISDYLAKRDAEWMSVLYNWL---GLSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRV 197 (816)
Q Consensus 123 ~V~VvT~n~yLA~Rd~e~~~~l~~~l---glsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~ 197 (816)
...||-|+++||.|..+.+..|-..+ .++..+++||.-.. -++...+.||++|||||+ .+-+ +.+...
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl-----~~~i--s~g~~~ 360 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRL-----LQPI--SKGLVT 360 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhh-----hhhh--hcccee
Confidence 47899999999999999888887665 45656777775432 234445789999999997 3333 334556
Q ss_pred cccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEE
Q psy2371 198 QRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQV 277 (816)
Q Consensus 198 ~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v 277 (816)
+..+.|+++||+|-+| ..+ |.+.|+++-.+++.- -++ -|. -+.+
T Consensus 361 lt~crFlvlDead~lL-~qg----------------y~d~I~r~h~qip~~-tsd--------------g~r----lq~~ 404 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLL-GQG----------------YDDKIYRFHGQIPHM-TSD--------------GFR----LQSP 404 (725)
T ss_pred eeeeEEEEecchhhhh-hcc----------------cHHHHHHHhccchhh-hcC--------------Ccc----cccc
Confidence 6789999999999988 322 555777777776631 000 000 0111
Q ss_pred Eechh-----hHHHHHHHHH---HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhc-----ccc
Q psy2371 278 FLTEN-----GYEKYENILI---KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEA-----KEN 344 (816)
Q Consensus 278 ~lt~~-----g~~~~e~~l~---~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaiea-----Ke~ 344 (816)
..+++ .....|+++. ---|+-..+..+-+|.+ +.+|+..+ ++.|.+ |.|+|+- |.+
T Consensus 405 vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv-----v~lv~p~~-----d~sw~~-lr~~i~td~vh~kdn 473 (725)
T KOG0349|consen 405 VCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV-----VKLVCPSV-----DGSWCD-LRQFIETDKVHTKDN 473 (725)
T ss_pred eeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc-----eeecCCcc-----CccHHH-HhhhhccCCcccccc
Confidence 11111 0011111110 00000001111122222 35677766 456766 4777653 111
Q ss_pred cee---ccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHH
Q psy2371 345 LEI---QNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAIL 421 (816)
Q Consensus 345 v~i---~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~ 421 (816)
+.+ +||+. ..+ ..+++.+. -+
T Consensus 474 ~~pg~~Spe~~-----------------------------------------------s~a----~kilkgEy-----~v 497 (725)
T KOG0349|consen 474 LLPGQVSPENP-----------------------------------------------SSA----TKILKGEY-----GV 497 (725)
T ss_pred cccccCCCCCh-----------------------------------------------hhh----hHHhcCch-----hh
Confidence 111 11111 111 01112211 11
Q ss_pred HHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCC---CCeEEEcCC--chHHHHHHHHHcCCCccEEEecCccccCcccc
Q psy2371 422 MDIKNCYIKEQPVLVGTTSIENSELLSNILKKNN---LPHSVLNAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDII 496 (816)
Q Consensus 422 ~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~g---i~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~ 496 (816)
..+. .|+-.+ .+|||+|+..++.|-+++.+.| ++|.-||++ .++|.+++-.+.-..-+.+||||+|+||+||.
T Consensus 498 ~ai~-~h~mdk-aiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 498 VAIR-RHAMDK-AIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred hhhh-hhccCc-eEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 2233 344444 7899999999999999999875 578889997 56777777666554557899999999999994
Q ss_pred CCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEe
Q psy2371 497 LGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 576 (816)
Q Consensus 497 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~l 576 (816)
|-.+|||.-+|++...|.||+||.||+-+-|.++.++
T Consensus 576 -------------------------------------------g~p~~invtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 576 -------------------------------------------GLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred -------------------------------------------CCceEEEEecCcccchhhhhhhccchhhhcceeEEEe
Confidence 3349999999999999999999999999999999988
Q ss_pred ccc
Q psy2371 577 SLD 579 (816)
Q Consensus 577 sle 579 (816)
..+
T Consensus 613 at~ 615 (725)
T KOG0349|consen 613 ATV 615 (725)
T ss_pred ecc
Confidence 654
No 96
>KOG0352|consensus
Probab=99.73 E-value=3.1e-16 Score=170.95 Aligned_cols=332 Identities=19% Similarity=0.182 Sum_probs=214.7
Q ss_pred HHHHHHHHHhcc--ccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 68 VCREASKRVLKM--RHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 68 ~vrea~~R~lg~--~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
.||||.+.++|. .-+|.|..|+..+.+|+ -+.|+||.||+|+|-||+++. +.=.+|++|--.|-+. ++-
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkD---QiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKD---QID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHH---HHH
Confidence 689999999998 45689999999888877 799999999999999999853 3334555655444432 232
Q ss_pred HHhhhcCCeEEEecCCCCHHHHHhhc--------CCCEEEECCCcchhhhhhhhhccCCCcccc-ccceEEEecchhhhh
Q psy2371 143 VLYNWLGLSIGVNSSEISHSLKKKSY--------EADITYGTNNEFGFDYLRDNMVFNSNDRVQ-RKLNFVILDEIDSIL 213 (816)
Q Consensus 143 ~l~~~lglsv~~i~~~~~~~~r~~~y--------~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~-r~~~~~IvDEaDs~L 213 (816)
. ...|.+.+..+.+.++..+|.... +-.+.|-||-.-+-+...+.+. .++. ..+.|++|||||.+-
T Consensus 80 H-L~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn----~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 80 H-LKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN----GLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred H-HHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH----HHhhhceeeeEEechhhhHh
Confidence 2 234567777777888877665322 3479999997765555455432 2222 357999999999985
Q ss_pred hhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHH
Q psy2371 214 IDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK 293 (816)
Q Consensus 214 iDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~ 293 (816)
-= + .+-...|. .+-.+-..++. ---+.||++...++.+=+ -
T Consensus 155 QW-G----------HDFRPDYL-~LG~LRS~~~~--------------------------vpwvALTATA~~~VqEDi-~ 195 (641)
T KOG0352|consen 155 QW-G----------HDFRPDYL-TLGSLRSVCPG--------------------------VPWVALTATANAKVQEDI-A 195 (641)
T ss_pred hh-c----------cccCcchh-hhhhHHhhCCC--------------------------CceEEeecccChhHHHHH-H
Confidence 11 0 00011233 22222222221 234678888777765432 1
Q ss_pred HHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchh-hhHHhhhcchhcc
Q psy2371 294 MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITF-QNYFRMYKKISGM 372 (816)
Q Consensus 294 ~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~-q~~f~~Y~~l~Gm 372 (816)
.+|+ |||.| .| ..+.+| .|+| |+
T Consensus 196 ~qL~-------------------------------------L~~PV------Ai------FkTP~FR~NLF--YD----- 219 (641)
T KOG0352|consen 196 FQLK-------------------------------------LRNPV------AI------FKTPTFRDNLF--YD----- 219 (641)
T ss_pred HHHh-------------------------------------hcCcH------Hh------ccCcchhhhhh--HH-----
Confidence 1111 12211 11 111121 1222 10
Q ss_pred cccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecCh-HHHHHHHHHHHHhh---------ccCC--CcEEEEEcc
Q psy2371 373 TGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTM-EEKYQAILMDIKNC---------YIKE--QPVLVGTTS 440 (816)
Q Consensus 373 TGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~-~~K~~ai~~~i~~~---------~~~g--rpVLVft~s 440 (816)
..|++. .+-+.-+.+....+ ..++ .--||+|+|
T Consensus 220 -----------------------------------~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRT 264 (641)
T KOG0352|consen 220 -----------------------------------NHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRT 264 (641)
T ss_pred -----------------------------------HHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEecc
Confidence 000000 00011111111111 1111 136899999
Q ss_pred cHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHH
Q psy2371 441 IENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKK 518 (816)
Q Consensus 441 i~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~ 518 (816)
.+.+|.++-.|..+||+....||.....|+..+.++=- .-.|++||+-+|-|+|=
T Consensus 265 R~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDK----------------------- 321 (641)
T KOG0352|consen 265 RNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDK----------------------- 321 (641)
T ss_pred HHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCC-----------------------
Confidence 99999999999999999999999877778877776533 33699999999999998
Q ss_pred HHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhh
Q psy2371 519 KNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 519 ~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~ 583 (816)
|.|+ +||+.+.|.|-.-|=|-.||+||-|.|-..++|-|-+|.--
T Consensus 322 ---------------p~VR-----FViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 322 ---------------PDVR-----FVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ---------------ccee-----EEEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 7888 99999999999999999999999999999999999999543
No 97
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=191.90 Aligned_cols=130 Identities=25% Similarity=0.305 Sum_probs=99.3
Q ss_pred cchhhhhhhcc-ccCCc--eeeecCCCCchHHHHHHHHHHHhcC-CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 81 HFDVQLIGGIA-LHYGN--ISEMQTGEGKTLVATLAAYLNSLSG-QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 81 p~~VQ~~~~~~-L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g-~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
.+|-|..++.. +.+|. |+.++||+|||+++.|.++-..+.| ..|.-++|++.||...++.+. -++.+|++|+..+
T Consensus 32 l~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~T 110 (766)
T COG1204 32 LFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGIST 110 (766)
T ss_pred hhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEec
Confidence 45556666543 33333 9999999999999999999655554 679999999999999999998 8899999999999
Q ss_pred CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCc
Q psy2371 157 SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTP 220 (816)
Q Consensus 157 ~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tp 220 (816)
|+++... .....+||+++||-.+ |-|..+- ..-...++.+||||+|-+- |+-|-|
T Consensus 111 gD~~~~~-~~l~~~~ViVtT~EK~--Dsl~R~~-----~~~~~~V~lvViDEiH~l~-d~~RG~ 165 (766)
T COG1204 111 GDYDLDD-ERLARYDVIVTTPEKL--DSLTRKR-----PSWIEEVDLVVIDEIHLLG-DRTRGP 165 (766)
T ss_pred CCcccch-hhhccCCEEEEchHHh--hHhhhcC-----cchhhcccEEEEeeeeecC-CcccCc
Confidence 9987433 2235789999999886 4333321 1145689999999999876 665644
No 98
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.72 E-value=2.9e-15 Score=178.68 Aligned_cols=128 Identities=22% Similarity=0.192 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHH--HHHHHcCCCccEEEecCcccc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGR 491 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmAGR 491 (816)
..++..+++++.+..+.|.+|||||+|...++.|++.|...|+++.++|+.....++ .+..+..+.-.|+|||++++|
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 345678888888877788899999999999999999999999999999998554444 443333334578999999999
Q ss_pred CccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecC-----CCCcchhhhhcCccCCC
Q psy2371 492 GTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTER-----HESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 492 GtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~-----pes~rid~Q~~GRtGRq 566 (816)
|.|+ |+|. +||+||. |.+.+.|.||+|||||.
T Consensus 509 Gfdl--------------------------------------p~v~-----lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 509 GLDI--------------------------------------PEVS-----LVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred Cccc--------------------------------------cCCc-----EEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 9999 5676 9999996 78999999999999995
Q ss_pred CCCceEEEEeccchhhhhh
Q psy2371 567 GDPGSSRFYLSLDDSLLKF 585 (816)
Q Consensus 567 GdpG~s~~~lsleD~l~~~ 585 (816)
..|.+++|++-.+.-|+.
T Consensus 546 -~~G~~i~~~~~~~~~~~~ 563 (652)
T PRK05298 546 -VNGKVILYADKITDSMQK 563 (652)
T ss_pred -CCCEEEEEecCCCHHHHH
Confidence 799999999865555544
No 99
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.71 E-value=1.7e-15 Score=180.08 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHHHHHHHHcCCCccEEEecCccc
Q psy2371 413 MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIAQAGHPKMITIATNMAG 490 (816)
Q Consensus 413 ~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~Ag~~g~VtIATnmAG 490 (816)
...++..+++++.+..+.|.+|||||+|+..++.|++.|.+.|+++..+|+... +|+..+..+..+.-.|+||||+++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 455777899999887788999999999999999999999999999999999754 444444444333457999999999
Q ss_pred cCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEec-----CCCCcchhhhhcCccCC
Q psy2371 491 RGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTE-----RHESRRIDNQLRGRSGR 565 (816)
Q Consensus 491 RGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te-----~pes~rid~Q~~GRtGR 565 (816)
||+|+ |+|. +||++| +|.+.+.|+||+|||||
T Consensus 504 rGfDi--------------------------------------P~v~-----lVvi~DadifG~p~~~~~~iqriGRagR 540 (655)
T TIGR00631 504 EGLDL--------------------------------------PEVS-----LVAILDADKEGFLRSERSLIQTIGRAAR 540 (655)
T ss_pred CCeee--------------------------------------CCCc-----EEEEeCcccccCCCCHHHHHHHhcCCCC
Confidence 99999 6776 999999 89999999999999999
Q ss_pred CCCCceEEEEeccchhhhhh
Q psy2371 566 QGDPGSSRFYLSLDDSLLKF 585 (816)
Q Consensus 566 qGdpG~s~~~lsleD~l~~~ 585 (816)
. .+|.+.+|+.-.+.-|+.
T Consensus 541 ~-~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 541 N-VNGKVIMYADKITDSMQK 559 (655)
T ss_pred C-CCCEEEEEEcCCCHHHHH
Confidence 8 689999999876655553
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=8.9e-16 Score=190.92 Aligned_cols=372 Identities=15% Similarity=0.133 Sum_probs=191.7
Q ss_pred cccchhhhhhhcccc----CC--c-eeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 79 MRHFDVQLIGGIALH----YG--N-ISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~----~G--~-Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
+.+.|-|..|+-.+. +| + ++.|+||+|||++++..++...- ..+.|++++++.+|..|-.+.|..+.-.-+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 457788888875542 34 2 88999999999986654442211 235799999999999999988776522222
Q ss_pred CeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh-hhccCCcceec-ccc
Q psy2371 150 LSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL-IDEARTPLIIS-GEI 227 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L-iDea~tpliis-g~~ 227 (816)
.++..+++...-..........|+++|.-.|.-..+...- .........++++||||||+-. .|. .++ |..
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~--~~~~~~~~~fdlIIiDEaHRs~~~d~-----~~~~~~~ 564 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDD--PMDKPPVDQYDCIIVDEAHRGYTLDK-----EMSEGEL 564 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhcccc--ccccCCCCcccEEEEECCCCCCcccc-----ccccchh
Confidence 2222122211111122223578999999876322111100 0011234578899999999852 121 011 100
Q ss_pred --ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccC
Q psy2371 228 --KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKN 305 (816)
Q Consensus 228 --~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~ 305 (816)
......|. ...+++..+ ....+-||+|.....-.+ |..
T Consensus 565 ~~~~~~~~~~-~yr~iL~yF---------------------------dA~~IGLTATP~r~t~~~-----------FG~- 604 (1123)
T PRK11448 565 QFRDQLDYVS-KYRRVLDYF---------------------------DAVKIGLTATPALHTTEI-----------FGE- 604 (1123)
T ss_pred ccchhhhHHH-HHHHHHhhc---------------------------CccEEEEecCCccchhHH-----------hCC-
Confidence 00111122 222333322 134567788764322222 211
Q ss_pred cceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHH
Q psy2371 306 KHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQE 385 (816)
Q Consensus 306 ~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~ 385 (816)
..+...+.|+|+ .|..+..+. .+.|..-| ...|++-..+.+.+++..
T Consensus 605 -----------------------pv~~Ysl~eAI~--DG~Lv~~~~----p~~i~t~~----~~~gi~~~~~e~~~~~~~ 651 (1123)
T PRK11448 605 -----------------------PVYTYSYREAVI--DGYLIDHEP----PIRIETRL----SQEGIHFEKGEEVEVINT 651 (1123)
T ss_pred -----------------------eeEEeeHHHHHh--cCCcccCcC----CEEEEEEe----ccccccccccchhhhcch
Confidence 112233555654 233221110 00000000 011221111111100000
Q ss_pred Hhc-CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhcc--CCCcEEEEEcccHhHHHHHHHHHhC------CC
Q psy2371 386 IYK-LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYI--KEQPVLVGTTSIENSELLSNILKKN------NL 456 (816)
Q Consensus 386 ~Y~-l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~--~grpVLVft~si~~se~Ls~~L~~~------gi 456 (816)
..+ ++.-.+|........+..-.++ ..+..+.|++.+.+... .+.++||||.|++.++.+.+.|.+. ++
T Consensus 652 ~~~~i~~~~l~d~~~~~~~~~~~~vi--~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~ 729 (1123)
T PRK11448 652 QTGEIDLATLEDEVDFEVEDFNRRVI--TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQV 729 (1123)
T ss_pred hhhhhhhccCcHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 0000111100000000000011 12233445555543221 2357999999999999999988753 33
Q ss_pred ---CeEEEcCCchHHHHHHHHHcCCCc-cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhh
Q psy2371 457 ---PHSVLNAKQHKLEAQIIAQAGHPK-MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532 (816)
Q Consensus 457 ---~~~vLnak~~~rEa~ii~~Ag~~g-~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (816)
.+.+++++...++..|-.+..... .|+|++||+++|+|+
T Consensus 730 ~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv------------------------------------- 772 (1123)
T PRK11448 730 EDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTVDLLTTGIDV------------------------------------- 772 (1123)
T ss_pred CccceEEEeCCccchHHHHHHHhCCCCCeEEEEecccccCCCc-------------------------------------
Confidence 345688887666666665644333 689999999999999
Q ss_pred hhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC-CceEEEE
Q psy2371 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD-PGSSRFY 575 (816)
Q Consensus 533 ~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd-pG~s~~~ 575 (816)
|.|. +||....+.|...|.|++||+.|--. .|-..|+
T Consensus 773 -P~v~-----~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~ 810 (1123)
T PRK11448 773 -PSIC-----NLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFR 810 (1123)
T ss_pred -cccc-----EEEEecCCCCHHHHHHHHhhhccCCccCCCceEE
Confidence 5676 89999999999999999999999644 2444443
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.70 E-value=3.7e-16 Score=178.56 Aligned_cols=354 Identities=18% Similarity=0.183 Sum_probs=197.0
Q ss_pred HhccccchhhhhhhccccC----Cc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 76 VLKMRHFDVQLIGGIALHY----GN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~~L~~----G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
...+.++|-|..+.=.+.. ++ ++.++||.|||.+++-.+.. .+..|+||+||.+|..| |...++.+++
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~---~~~~~Lvlv~~~~L~~Q---w~~~~~~~~~ 105 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE---LKRSTLVLVPTKELLDQ---WAEALKKFLL 105 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH---hcCCEEEEECcHHHHHH---HHHHHHHhcC
Confidence 3455678888888765543 33 99999999999999877763 24449999999999997 5567888888
Q ss_pred Ce--EEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 150 LS--IGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 150 ls--v~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
.. +|.+.++... ... .+|+|+|-..+... .++ .....+.+..+|+||||.+..+.
T Consensus 106 ~~~~~g~~~~~~~~----~~~-~~i~vat~qtl~~~---~~l----~~~~~~~~~liI~DE~Hh~~a~~----------- 162 (442)
T COG1061 106 LNDEIGIYGGGEKE----LEP-AKVTVATVQTLARR---QLL----DEFLGNEFGLIIFDEVHHLPAPS----------- 162 (442)
T ss_pred CccccceecCceec----cCC-CcEEEEEhHHHhhh---hhh----hhhcccccCEEEEEccccCCcHH-----------
Confidence 85 5555554211 111 57999998776321 122 12334579999999999988554
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcc
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKH 307 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~d 307 (816)
|. .+ ...+.. .| .-+-||++-. +..
T Consensus 163 ------~~-~~---~~~~~~-------------------~~------~~LGLTATp~-R~D------------------- 187 (442)
T COG1061 163 ------YR-RI---LELLSA-------------------AY------PRLGLTATPE-RED------------------- 187 (442)
T ss_pred ------HH-HH---HHhhhc-------------------cc------ceeeeccCce-eec-------------------
Confidence 23 22 222221 00 0233444411 000
Q ss_pred eEEeCCeEEEeecccccccccccchhhhh-HHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHH
Q psy2371 308 YIIKNNKIIIVDEFTGRLMKTRRWAEGLH-QALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEI 386 (816)
Q Consensus 308 YiV~d~~v~ivD~~tGr~~~grr~s~GLh-QaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~ 386 (816)
++.+..+...-|.+....+|.+.+- ..+--.+-+.+...-..-....|..++..+....=-.+|+.....
T Consensus 188 ----~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 258 (442)
T COG1061 188 ----GGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE----- 258 (442)
T ss_pred ----CCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH-----
Confidence 0001111111111111222222111 000000111111100000111222222211110000111100000
Q ss_pred hcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch
Q psy2371 387 YKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466 (816)
Q Consensus 387 Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~ 466 (816)
...+......|..++...+.. |..+.++||||.++..++.++..+...|+ +..+.++..
T Consensus 259 -------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~ 317 (442)
T COG1061 259 -------------------ARRIAIASERKIAAVRGLLLK-HARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETP 317 (442)
T ss_pred -------------------HHHHhhccHHHHHHHHHHHHH-hcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCC
Confidence 011223345566655555443 33678999999999999999999999999 999999865
Q ss_pred HHHHHHHHHcCCC--ccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q psy2371 467 KLEAQIIAQAGHP--KMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHI 544 (816)
Q Consensus 467 ~rEa~ii~~Ag~~--g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhV 544 (816)
..|++-+-+.++. -.+++++.|+.=|+|| |++. .+
T Consensus 318 ~~eR~~il~~fr~g~~~~lv~~~vl~EGvDi--------------------------------------P~~~-----~~ 354 (442)
T COG1061 318 KEEREAILERFRTGGIKVLVTVKVLDEGVDI--------------------------------------PDAD-----VL 354 (442)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeccceecC--------------------------------------CCCc-----EE
Confidence 5555433333333 5799999999999999 5665 67
Q ss_pred EEecCCCCcchhhhhcCccCC--CCCCce-EEEEeccchhhhhhc
Q psy2371 545 IGTERHESRRIDNQLRGRSGR--QGDPGS-SRFYLSLDDSLLKFF 586 (816)
Q Consensus 545 I~te~pes~rid~Q~~GRtGR--qGdpG~-s~~~lsleD~l~~~~ 586 (816)
|..--..|++.|.|+.||.=| .|..+. +.+|....+++....
T Consensus 355 i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~ 399 (442)
T COG1061 355 IILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEED 399 (442)
T ss_pred EEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccc
Confidence 777779999999999999999 333333 444444445454443
No 102
>KOG0351|consensus
Probab=99.70 E-value=3.4e-16 Score=189.90 Aligned_cols=319 Identities=20% Similarity=0.144 Sum_probs=215.3
Q ss_pred HHHhccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 74 KRVLKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 74 ~R~lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.-++|+. -.|-|..++.+.+.|+ .+.|+||-||+|+|-||++ |.+.-.+||.|=..|-+- +...+ ...+|
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---l~~gitvVISPL~SLm~D---Qv~~L-~~~~I 329 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---LLGGVTVVISPLISLMQD---QVTHL-SKKGI 329 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---ccCCceEEeccHHHHHHH---HHHhh-hhcCc
Confidence 4456663 3478999999999998 9999999999999999999 445577888998887552 33344 56799
Q ss_pred eEEEecCCCCHHHHHhhc--------CCCEEEECCCcchh-hhhhhhhccCCCcccc-ccceEEEecchhhhhhhccCCc
Q psy2371 151 SIGVNSSEISHSLKKKSY--------EADITYGTNNEFGF-DYLRDNMVFNSNDRVQ-RKLNFVILDEIDSILIDEARTP 220 (816)
Q Consensus 151 sv~~i~~~~~~~~r~~~y--------~~dI~ygT~~~l~f-DyLrD~~~~~~~~~~~-r~~~~~IvDEaDs~LiDea~tp 220 (816)
....+.+++...++...| ..+|+|.||-.+.- .-|.+.+ ..+.. ..+-.+||||||.+.-=.
T Consensus 330 ~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~----~~L~~~~~lal~vIDEAHCVSqWg---- 401 (941)
T KOG0351|consen 330 PACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESL----ADLYARGLLALFVIDEAHCVSQWG---- 401 (941)
T ss_pred ceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHH----HhccCCCeeEEEEecHHHHhhhhc----
Confidence 999999999876665554 25899999966420 0111111 11111 126788999999987100
Q ss_pred ceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHH
Q psy2371 221 LIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHV 300 (816)
Q Consensus 221 liisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~ 300 (816)
.+-...|. .+..+-...+ .---+.||++....+.+=+
T Consensus 402 -------HdFRp~Yk-~l~~l~~~~~--------------------------~vP~iALTATAT~~v~~DI--------- 438 (941)
T KOG0351|consen 402 -------HDFRPSYK-RLGLLRIRFP--------------------------GVPFIALTATATERVREDV--------- 438 (941)
T ss_pred -------ccccHHHH-HHHHHHhhCC--------------------------CCCeEEeehhccHHHHHHH---------
Confidence 00011233 2211111111 0123345555444433211
Q ss_pred HhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchH
Q psy2371 301 LYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEA 380 (816)
Q Consensus 301 l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~ 380 (816)
T Consensus 439 -------------------------------------------------------------------------------- 438 (941)
T KOG0351|consen 439 -------------------------------------------------------------------------------- 438 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCe---EEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCC
Q psy2371 381 YEFQEIYKLE---TITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLP 457 (816)
Q Consensus 381 ~e~~~~Y~l~---vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~ 457 (816)
.+-.++. +..--.|+|..+- .+...+.....-.+...+...+ .+++.||.|.|...+|.++..|...|+.
T Consensus 439 ---i~~L~l~~~~~~~~sfnR~NL~y---eV~~k~~~~~~~~~~~~~~~~~-~~~s~IIYC~sr~~ce~vs~~L~~~~~~ 511 (941)
T KOG0351|consen 439 ---IRSLGLRNPELFKSSFNRPNLKY---EVSPKTDKDALLDILEESKLRH-PDQSGIIYCLSRKECEQVSAVLRSLGKS 511 (941)
T ss_pred ---HHHhCCCCcceecccCCCCCceE---EEEeccCccchHHHHHHhhhcC-CCCCeEEEeCCcchHHHHHHHHHHhchh
Confidence 1111111 0111112221110 1112222333445666666554 6789999999999999999999999999
Q ss_pred eEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhh
Q psy2371 458 HSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDK 535 (816)
Q Consensus 458 ~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (816)
...+||.....+++-|..+..++ +|++||=++|-|+|- |+
T Consensus 512 a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK--------------------------------------~D 553 (941)
T KOG0351|consen 512 AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK--------------------------------------PD 553 (941)
T ss_pred hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC--------------------------------------Cc
Confidence 99999998777777777766655 799999999999999 67
Q ss_pred hhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 536 VISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 536 V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|+ .||+|-+|.|-+-|-|=.|||||=|.|-+..+|.+..|
T Consensus 554 VR-----~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D 593 (941)
T KOG0351|consen 554 VR-----FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYAD 593 (941)
T ss_pred ee-----EEEECCCchhHHHHHHhccccCcCCCcceeEEecchhH
Confidence 88 99999999999999999999999999999999999987
No 103
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.67 E-value=6.4e-15 Score=180.79 Aligned_cols=81 Identities=25% Similarity=0.199 Sum_probs=66.6
Q ss_pred hccccchhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHH-HHHHHhhhcC
Q psy2371 77 LKMRHFDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAE-WMSVLYNWLG 149 (816)
Q Consensus 77 lg~~p~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e-~~~~l~~~lg 149 (816)
.|+.+.|.|...+. .+.+|+ ++||+||+|||++|++|++..+..|+.|.|.|||+.|+.|... .+..+-+.+|
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~ 321 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEKDIPLLNEILN 321 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHHHHHHHHcC
Confidence 68899999997444 455666 8999999999999999998877778899999999999999865 5666666767
Q ss_pred --CeEEEecC
Q psy2371 150 --LSIGVNSS 157 (816)
Q Consensus 150 --lsv~~i~~ 157 (816)
++++++.|
T Consensus 322 ~~~~~~~~kG 331 (850)
T TIGR01407 322 FKINAALIKG 331 (850)
T ss_pred CCceEEEEEc
Confidence 77776665
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.66 E-value=1.7e-15 Score=153.90 Aligned_cols=166 Identities=22% Similarity=0.219 Sum_probs=129.9
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC-----CcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG-----QGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g-----~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
.|.. |++.|..++..+++|+ ++.++||+|||+++++|++...... ..++|++|+++|+.|.++.+..+....
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 4554 8999999999998887 9999999999999999998655543 359999999999999999999998888
Q ss_pred CCeEEEecCCCCHHHHHhhc--CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccc
Q psy2371 149 GLSIGVNSSEISHSLKKKSY--EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y--~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~ 226 (816)
++.+.+..|+.+.......+ +++|+++||..+ .+++..+ ....+.+.++|+||+|.+. +.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~------~~~~~~l~~lIvDE~h~~~-~~~--------- 159 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERG------KLDLSKVKYLVLDEADRML-DMG--------- 159 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CCChhhCCEEEEeChHHhh-ccC---------
Confidence 99999999988865555555 789999999987 4554432 2445789999999999987 432
Q ss_pred cccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 227 IKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 227 ~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
+...+..++..++. ..+.+.+|++....++.++
T Consensus 160 -------~~~~~~~~~~~l~~-------------------------~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 160 -------FEDQIREILKLLPK-------------------------DRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred -------hHHHHHHHHHhCCc-------------------------ccEEEEEeccCCHHHHHHH
Confidence 22255556665543 3567788998777666654
No 105
>KOG0952|consensus
Probab=99.65 E-value=5.8e-15 Score=174.87 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=97.4
Q ss_pred chhhhhhhccccC--Cc-eeeecCCCCchHHHHHHHHHHHhc-----------CCcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 82 FDVQLIGGIALHY--GN-ISEMQTGEGKTLVATLAAYLNSLS-----------GQGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 82 ~~VQ~~~~~~L~~--G~-Iaem~TGEGKTL~~~Lpa~l~aL~-----------g~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
..+|..+-|...+ ++ |+.++||+|||-+|.|.++ +.+. +..+.-|+|+..||.-..+.+.+=+..
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~IL-r~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCIL-RTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHH-HHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 3589999987743 33 9999999999999999887 5654 235889999999999999999999999
Q ss_pred cCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 148 LGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 148 lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
||++|.-++|++.-- +.+...|||++.||--+ |.+...- .........+..+||||||- |-|+
T Consensus 191 ~gi~v~ELTGD~ql~-~tei~~tqiiVTTPEKw--DvvTRk~--~~d~~l~~~V~LviIDEVHl-Lhd~ 253 (1230)
T KOG0952|consen 191 LGISVRELTGDTQLT-KTEIADTQIIVTTPEKW--DVVTRKS--VGDSALFSLVRLVIIDEVHL-LHDD 253 (1230)
T ss_pred ccceEEEecCcchhh-HHHHHhcCEEEecccce--eeeeeee--ccchhhhhheeeEEeeeehh-hcCc
Confidence 999999999998632 22356899999999874 4432211 01122345789999999995 4354
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.63 E-value=2.9e-15 Score=146.92 Aligned_cols=126 Identities=22% Similarity=0.229 Sum_probs=102.6
Q ss_pred chhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC--cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 82 FDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ--GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~--~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
||.|..++..+.+|+ ++.++||+|||+++.+|++.....++ .+.+++|+++|+.+..+.+..++...++++..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 689999999888777 99999999999999999996666665 79999999999999999999999999999999999
Q ss_pred CCCHH-H--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh
Q psy2371 158 EISHS-L--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 158 ~~~~~-~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li 214 (816)
+.+.. . .....+++|+|+||..| ++++.. .. . ....+.++|+||+|.+.-
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~----~~-~-~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQL-LDLISN----GK-I-NISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHH-HHHHHT----TS-S-TGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccccccccCcchh-hccccc----cc-c-ccccceeeccCccccccc
Confidence 88743 2 22234699999999987 444433 11 1 234499999999999984
No 107
>KOG0354|consensus
Probab=99.57 E-value=1.8e-13 Score=160.59 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=82.5
Q ss_pred ccchhhhhh-hccccCCceeeecCCCCchHHHHHHHHHH--HhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 80 RHFDVQLIG-GIALHYGNISEMQTGEGKTLVATLAAYLN--SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 80 ~p~~VQ~~~-~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~--aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
.+.+=|..- -++|.++-|+-.+||.|||.+|+.-++-+ +-.+-.|.+++||+=|-.|....+...+.. -++....
T Consensus 62 ~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l 139 (746)
T KOG0354|consen 62 ELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQL 139 (746)
T ss_pred cccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeec
Confidence 334445444 45663333999999999999999888733 223445999999999988877555544433 3444445
Q ss_pred CC-CCHHHHHhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 157 SE-ISHSLKKKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 157 ~~-~~~~~r~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
|| .++.-|...+ .++|.+.||..+. +.|......- +..+..+|+||||+-.
T Consensus 140 ~~~~~~~~r~~i~~s~~vff~TpQil~-----ndL~~~~~~~-ls~fs~iv~DE~Hra~ 192 (746)
T KOG0354|consen 140 GDTVPRSNRGEIVASKRVFFRTPQILE-----NDLKSGLHDE-LSDFSLIVFDECHRTS 192 (746)
T ss_pred cCccCCCchhhhhcccceEEeChHhhh-----hhcccccccc-cceEEEEEEccccccc
Confidence 55 3444444444 5799999998873 3332221111 5679999999999855
No 108
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=9.1e-13 Score=160.74 Aligned_cols=80 Identities=19% Similarity=0.079 Sum_probs=65.0
Q ss_pred hccccchhhhhh---hc-cccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHH-HHHHHHHhhhcC
Q psy2371 77 LKMRHFDVQLIG---GI-ALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRD-AEWMSVLYNWLG 149 (816)
Q Consensus 77 lg~~p~~VQ~~~---~~-~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd-~e~~~~l~~~lg 149 (816)
.|+.+.+-|..- +. ++.+|. ++|++||+|||++|++|++.. ..++.|.|.|||++|+.|. ...+..+.+.++
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~-~~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~ 320 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQ-SDQRQIIVSVPTKILQDQIMAEEVKAIQEVFH 320 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 467888888873 32 344555 899999999999999998753 4688999999999999999 577888888899
Q ss_pred CeEEEecC
Q psy2371 150 LSIGVNSS 157 (816)
Q Consensus 150 lsv~~i~~ 157 (816)
+++.++.|
T Consensus 321 ~~~~~~kg 328 (820)
T PRK07246 321 IDCHSLKG 328 (820)
T ss_pred CcEEEEEC
Confidence 98876554
No 109
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.54 E-value=5.9e-14 Score=131.22 Aligned_cols=122 Identities=24% Similarity=0.283 Sum_probs=101.3
Q ss_pred cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCC--ccEEEecCc
Q psy2371 411 KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHP--KMITIATNM 488 (816)
Q Consensus 411 ~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~--g~VtIATnm 488 (816)
.+...|...+.+.+.+..+.+.++||||+++..++.+.+.|++.++++..+|+.....++..+..++.. ..|+|+|++
T Consensus 8 ~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~ 87 (131)
T cd00079 8 PVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV 87 (131)
T ss_pred ECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh
Confidence 334478888888888766567899999999999999999999999999999998655555444444443 469999999
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
+|+|+|+ |.+ .+||.++.|.+...+.|+.||+||.|+
T Consensus 88 ~~~G~d~--------------------------------------~~~-----~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 88 IARGIDL--------------------------------------PNV-----SVVINYDLPWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred hhcCcCh--------------------------------------hhC-----CEEEEeCCCCCHHHheecccccccCCC
Confidence 9999999 333 399999999999999999999999999
Q ss_pred CceEEEE
Q psy2371 569 PGSSRFY 575 (816)
Q Consensus 569 pG~s~~~ 575 (816)
+|.+..|
T Consensus 125 ~~~~~~~ 131 (131)
T cd00079 125 KGTAILL 131 (131)
T ss_pred CceEEeC
Confidence 9987653
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.53 E-value=8.9e-13 Score=141.56 Aligned_cols=296 Identities=21% Similarity=0.278 Sum_probs=179.7
Q ss_pred ccchhhhhhhcccc------CCceeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCc----HHHHHHHHHHHHHHhhhc
Q psy2371 80 RHFDVQLIGGIALH------YGNISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTIS----DYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~------~G~Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n----~yLA~Rd~e~~~~l~~~l 148 (816)
..++-|..+.-.|. +-.|+.+-||.|||-. ..+++..+| .|..|-|.+|- -||+.|.... |.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G~~vciASPRvDVclEl~~Rlk~a------F~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQA------FS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHh------hc
Confidence 34456766665553 2339999999999964 234444555 45556666664 3666665543 34
Q ss_pred CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccc
Q psy2371 149 GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIK 228 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~ 228 (816)
+.+..+++|++++. +.+.++++|-..+ || .-..++++||||||..=.-.
T Consensus 170 ~~~I~~Lyg~S~~~-----fr~plvVaTtHQL----lr----------Fk~aFD~liIDEVDAFP~~~------------ 218 (441)
T COG4098 170 NCDIDLLYGDSDSY-----FRAPLVVATTHQL----LR----------FKQAFDLLIIDEVDAFPFSD------------ 218 (441)
T ss_pred cCCeeeEecCCchh-----ccccEEEEehHHH----HH----------HHhhccEEEEeccccccccC------------
Confidence 67888889887654 4578999998776 22 11368999999999763211
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcce
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
+..++. .+.+ -.+ +..-.++||++...++++-+
T Consensus 219 -d~~L~~-Av~~----ark------------------------~~g~~IylTATp~k~l~r~~----------------- 251 (441)
T COG4098 219 -DQSLQY-AVKK----ARK------------------------KEGATIYLTATPTKKLERKI----------------- 251 (441)
T ss_pred -CHHHHH-HHHH----hhc------------------------ccCceEEEecCChHHHHHHh-----------------
Confidence 112233 2221 111 12567899999887776533
Q ss_pred EEeCCeEEEee---cccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHH
Q psy2371 309 IIKNNKIIIVD---EFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQE 385 (816)
Q Consensus 309 iV~d~~v~ivD---~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~ 385 (816)
..|++.++- .|.|+.++-.++ +=.-|+++
T Consensus 252 --~~g~~~~~klp~RfH~~pLpvPkf-------------------------~w~~~~~k--------------------- 283 (441)
T COG4098 252 --LKGNLRILKLPARFHGKPLPVPKF-------------------------VWIGNWNK--------------------- 283 (441)
T ss_pred --hhCCeeEeecchhhcCCCCCCCce-------------------------EEeccHHH---------------------
Confidence 123332221 122222211110 00000100
Q ss_pred HhcCeEEEcCCCCccccccCcCeEecChHHHHH-HHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh-CCCCe-EEEc
Q psy2371 386 IYKLETITVPPNKINKRKDLQDKIYKTMEEKYQ-AILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK-NNLPH-SVLN 462 (816)
Q Consensus 386 ~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~-ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~-~gi~~-~vLn 462 (816)
...| .|.. .+.+.++..+.+|+|+|||+++++..|.++..|++ ....+ ...|
T Consensus 284 -------------~l~r------------~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vh 338 (441)
T COG4098 284 -------------KLQR------------NKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVH 338 (441)
T ss_pred -------------Hhhh------------ccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeee
Confidence 0001 1111 56777777888999999999999999999999965 33333 4455
Q ss_pred CC-chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy2371 463 AK-QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGG 541 (816)
Q Consensus 463 ak-~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 541 (816)
+. ++..| .+-++..+.-.++|+|-+.-||+-+ |.|.
T Consensus 339 s~d~~R~E-kV~~fR~G~~~lLiTTTILERGVTf--------------------------------------p~vd---- 375 (441)
T COG4098 339 SEDQHRKE-KVEAFRDGKITLLITTTILERGVTF--------------------------------------PNVD---- 375 (441)
T ss_pred ccCccHHH-HHHHHHcCceEEEEEeehhhccccc--------------------------------------ccce----
Confidence 54 55555 4544554455799999999999998 4454
Q ss_pred eEEEEecCC-CCcchhhhhcCccCCCCC--CceEEEEe
Q psy2371 542 LHIIGTERH-ESRRIDNQLRGRSGRQGD--PGSSRFYL 576 (816)
Q Consensus 542 LhVI~te~p-es~rid~Q~~GRtGRqGd--pG~s~~~l 576 (816)
..|+|.+.+ -+...-+|..||+||-=+ .|...||-
T Consensus 376 V~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 376 VFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred EEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 489998843 456677999999999644 35555553
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.50 E-value=5.5e-12 Score=153.40 Aligned_cols=332 Identities=20% Similarity=0.205 Sum_probs=216.6
Q ss_pred cccCCCc--chhhHHHHHHHHHHHHHHhccccchhhhhhhccc----cCCc----eeeecCCCCchHHHHHHHHHHHhcC
Q psy2371 52 IHSGETL--DSILPKAFSVCREASKRVLKMRHFDVQLIGGIAL----HYGN----ISEMQTGEGKTLVATLAAYLNSLSG 121 (816)
Q Consensus 52 ~~~g~~l--d~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L----~~G~----Iaem~TGEGKTL~~~Lpa~l~aL~g 121 (816)
.+.|-.. |.-.-+.|+.- +++..||=|+.|+-.+ .+|+ +.++.-|=|||-||+=+|+..+..|
T Consensus 571 ~~~G~af~~d~~~q~~F~~~-------FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G 643 (1139)
T COG1197 571 AKKGFAFPPDTEWQEEFEAS-------FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG 643 (1139)
T ss_pred hccCCCCCCChHHHHHHHhc-------CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC
Confidence 3445443 44444455433 6778889999998654 3454 9999999999999999999888899
Q ss_pred CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHh------hcCCCEEEECCCcchhhhhhhhhccCCCc
Q psy2371 122 QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKK------SYEADITYGTNNEFGFDYLRDNMVFNSND 195 (816)
Q Consensus 122 ~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~ 195 (816)
++|-|++||--||+|-++.|..=|+-++++|..+..=.+..+++. .-..||++||..=| . .+
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~-------kd 711 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----S-------KD 711 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----C-------CC
Confidence 999999999999999999999999999999998877656544332 23579999998544 2 23
Q ss_pred cccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCc
Q psy2371 196 RVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETN 275 (816)
Q Consensus 196 ~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~ 275 (816)
.....+..+||||=++.=.- -.+-++.|+. + --
T Consensus 712 v~FkdLGLlIIDEEqRFGVk----------------------~KEkLK~Lr~-----------------~--------VD 744 (1139)
T COG1197 712 VKFKDLGLLIIDEEQRFGVK----------------------HKEKLKELRA-----------------N--------VD 744 (1139)
T ss_pred cEEecCCeEEEechhhcCcc----------------------HHHHHHHHhc-----------------c--------Cc
Confidence 45568899999998886531 1122334432 1 12
Q ss_pred EEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccc
Q psy2371 276 QVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLA 355 (816)
Q Consensus 276 ~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla 355 (816)
-+.||+|.+.+-- |.++ .|+
T Consensus 745 vLTLSATPIPRTL-----------------------------------------------~Msm---~Gi---------- 764 (1139)
T COG1197 745 VLTLSATPIPRTL-----------------------------------------------NMSL---SGI---------- 764 (1139)
T ss_pred EEEeeCCCCcchH-----------------------------------------------HHHH---hcc----------
Confidence 3466776654321 1111 000
Q ss_pred cchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCC-CCccccccCcCeEecChHH-HHHHHHHHHHhhccCCCc
Q psy2371 356 SITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPP-NKINKRKDLQDKIYKTMEE-KYQAILMDIKNCYIKEQP 433 (816)
Q Consensus 356 ~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt-~~p~~r~d~~d~v~~t~~~-K~~ai~~~i~~~~~~grp 433 (816)
=.+.|+.-|| ++--.+ .+|-..... =-.||.+|+. .|-.
T Consensus 765 -------------------------------RdlSvI~TPP~~R~pV~----T~V~~~d~~~ireAI~REl~----RgGQ 805 (1139)
T COG1197 765 -------------------------------RDLSVIATPPEDRLPVK----TFVSEYDDLLIREAILRELL----RGGQ 805 (1139)
T ss_pred -------------------------------hhhhhccCCCCCCcceE----EEEecCChHHHHHHHHHHHh----cCCE
Confidence 0122233332 221111 111111111 2235666653 3444
Q ss_pred EEEEEcccHhHHHHHHHHHhC--CCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhh
Q psy2371 434 VLVGTTSIENSELLSNILKKN--NLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIK 509 (816)
Q Consensus 434 VLVft~si~~se~Ls~~L~~~--gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~ 509 (816)
|-...|.++.-+.++..|+.. ..++.+.||.++++|-+-+..++. .-.|+|||-+--=|+||+
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP------------- 872 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP------------- 872 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC-------------
Confidence 888899999999999999986 445889999998887665554444 457999999999999994
Q ss_pred hcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEE-EecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcCh
Q psy2371 510 KNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHII-GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSS 588 (816)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI-~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~ 588 (816)
.+. ..+| +.| +---..-=|+|||.||-...|.|.|+....+. +..-+-
T Consensus 873 -------------------------nAN----TiIIe~AD-~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~-lT~~A~ 921 (1139)
T COG1197 873 -------------------------NAN----TIIIERAD-KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA-LTEDAE 921 (1139)
T ss_pred -------------------------CCc----eEEEeccc-cccHHHHHHhccccCCccceEEEEEeecCccc-cCHHHH
Confidence 343 1222 222 22233455999999999999999888755443 332333
Q ss_pred HHHH
Q psy2371 589 DQIK 592 (816)
Q Consensus 589 ~~~~ 592 (816)
.|+.
T Consensus 922 kRL~ 925 (1139)
T COG1197 922 KRLE 925 (1139)
T ss_pred HHHH
Confidence 3443
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.1e-10 Score=136.88 Aligned_cols=139 Identities=23% Similarity=0.293 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 66 FSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 66 ~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+.-+.+--++.+|.+|.-.|..=+-.+..|+ =+-++||.|||---++-++..|..|+.|.++.||.-|+.|.++.+..
T Consensus 68 ~e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 68 YEEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 4445566678899999999999888888998 56799999999776666666889999999999999999999999999
Q ss_pred HhhhcC-CeEEEec-CCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 144 LYNWLG-LSIGVNS-SEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 144 l~~~lg-lsv~~i~-~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+...-| +.+-+++ +.++.++++.+ -+.||.++|+. ||..|+. .+..-+|+|++||-||++|
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~-----FL~k~~e----~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ-----FLSKRFE----ELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH-----HHHhhHH----HhcccCCCEEEEccHHHHH
Confidence 987776 5555544 44565554433 35799999984 3566652 3444589999999999999
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.35 E-value=2.2e-11 Score=147.46 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=86.2
Q ss_pred HHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch-----HHHHHHHHH-cCCCccEEEecCccccCcc
Q psy2371 421 LMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH-----KLEAQIIAQ-AGHPKMITIATNMAGRGTD 494 (816)
Q Consensus 421 ~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~-----~rEa~ii~~-Ag~~g~VtIATnmAGRGtD 494 (816)
...+....+.|.+|||.|||+..|..++..|+..+.++..||+... +.|.++.+. +...+.|.|||.+.-=|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 3334444567899999999999999999999998888999999842 234444433 5567889999999999999
Q ss_pred ccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC--CCceE
Q psy2371 495 IILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG--DPGSS 572 (816)
Q Consensus 495 I~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG--dpG~s 572 (816)
|.. .++-||+ ...+.-+||.||.+|-| ++|..
T Consensus 510 idf---------------------------------------------d~mITe~-aPidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 510 IDF---------------------------------------------DVLITEL-APIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred ccc---------------------------------------------CeeeecC-CCHHHHHHHHHHHhhcccccCCce
Confidence 942 4778895 55888899999999999 66766
Q ss_pred EEEe
Q psy2371 573 RFYL 576 (816)
Q Consensus 573 ~~~l 576 (816)
..+.
T Consensus 544 ~v~~ 547 (733)
T COG1203 544 YVYN 547 (733)
T ss_pred eEee
Confidence 5544
No 114
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.35 E-value=4.8e-11 Score=147.06 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHHHHHHHHcC-CCc--cEEEecC
Q psy2371 413 MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIAQAG-HPK--MITIATN 487 (816)
Q Consensus 413 ~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~Ag-~~g--~VtIATn 487 (816)
...|+..+...+......|..|||||......+.|...|...|+++..++|... +|++.|-.+.. .++ .++++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 456777777766666678889999999999999999999999999999999854 55555555532 222 4689999
Q ss_pred ccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC
Q psy2371 488 MAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG 567 (816)
Q Consensus 488 mAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG 567 (816)
.+|-|++.. .+. +||.+|.|=++..+.|+.||+-|.|
T Consensus 549 AGGlGINLt--------------------------------------~Ad-----~VIiyD~dWNP~~d~QAidRaHRIG 585 (1033)
T PLN03142 549 AGGLGINLA--------------------------------------TAD-----IVILYDSDWNPQVDLQAQDRAHRIG 585 (1033)
T ss_pred ccccCCchh--------------------------------------hCC-----EEEEeCCCCChHHHHHHHHHhhhcC
Confidence 999999984 222 9999999999999999999999999
Q ss_pred CCceEE
Q psy2371 568 DPGSSR 573 (816)
Q Consensus 568 dpG~s~ 573 (816)
......
T Consensus 586 Qkk~V~ 591 (1033)
T PLN03142 586 QKKEVQ 591 (1033)
T ss_pred CCceEE
Confidence 998763
No 115
>KOG0353|consensus
Probab=99.35 E-value=3e-11 Score=130.55 Aligned_cols=312 Identities=19% Similarity=0.196 Sum_probs=196.9
Q ss_pred ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 80 RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
+-.|.|+.++-+.+.|. ..-|+||-||+|+|-||+++ ..--.+|+||--.|-...- -..+.||++...+..
T Consensus 94 kfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---adg~alvi~plislmedqi----l~lkqlgi~as~lna 166 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---ADGFALVICPLISLMEDQI----LQLKQLGIDASMLNA 166 (695)
T ss_pred hcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---cCCceEeechhHHHHHHHH----HHHHHhCcchhhccC
Confidence 45689999998888887 88999999999999999983 2334789999888766332 235678998887776
Q ss_pred CCCHHHHH--hh--c----CCCEEEECCCcchhhh-hhhhhccCCCccccccceEEEecchhhhhh--hccCCcceeccc
Q psy2371 158 EISHSLKK--KS--Y----EADITYGTNNEFGFDY-LRDNMVFNSNDRVQRKLNFVILDEIDSILI--DEARTPLIISGE 226 (816)
Q Consensus 158 ~~~~~~r~--~~--y----~~dI~ygT~~~l~fDy-LrD~~~~~~~~~~~r~~~~~IvDEaDs~Li--Dea~tpliisg~ 226 (816)
..+.++-+ .+ - .-..+|.||..++-.- ..+.+. ..+.-+.+...-|||||.--- -++|
T Consensus 167 nsske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle---ka~~~~~~~~iaidevhccsqwghdfr-------- 235 (695)
T KOG0353|consen 167 NSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE---KALEAGFFKLIAIDEVHCCSQWGHDFR-------- 235 (695)
T ss_pred cccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH---HHhhcceeEEEeecceeehhhhCcccC--------
Confidence 66644322 11 1 2368999997764210 011111 122335677778999997641 1111
Q ss_pred cccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHH----HHHHHHHHHHHHHHHh
Q psy2371 227 IKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEK----YENILIKMALRAHVLY 302 (816)
Q Consensus 227 ~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~----~e~~l~~~Al~A~~l~ 302 (816)
..|. .+.-+-++++. ---+-||++.... +.+++ ++.|..
T Consensus 236 -----~dy~-~l~ilkrqf~~--------------------------~~iigltatatn~vl~d~k~il---~ie~~~-- 278 (695)
T KOG0353|consen 236 -----PDYK-ALGILKRQFKG--------------------------APIIGLTATATNHVLDDAKDIL---CIEAAF-- 278 (695)
T ss_pred -----cchH-HHHHHHHhCCC--------------------------CceeeeehhhhcchhhHHHHHH---hHHhhh--
Confidence 1233 22222222221 1122344443222 22222 111111
Q ss_pred ccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHH
Q psy2371 303 HKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYE 382 (816)
Q Consensus 303 ~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e 382 (816)
|| ||+-...-
T Consensus 279 -------------------------------------------------------tf---------------~a~fnr~n 288 (695)
T KOG0353|consen 279 -------------------------------------------------------TF---------------RAGFNRPN 288 (695)
T ss_pred -------------------------------------------------------ee---------------ecccCCCC
Confidence 11 11000000
Q ss_pred HHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEc
Q psy2371 383 FQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462 (816)
Q Consensus 383 ~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLn 462 (816)
....|+.=|. ++++-.+.|+..|+... .||.-+|+|-|...+|.++..|+.+||.....|
T Consensus 289 ----l~yev~qkp~---------------n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yh 348 (695)
T KOG0353|consen 289 ----LKYEVRQKPG---------------NEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYH 348 (695)
T ss_pred ----ceeEeeeCCC---------------ChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccc
Confidence 0002333333 24455566777776554 689999999999999999999999999988888
Q ss_pred CCchHHHHHHHHH---cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy2371 463 AKQHKLEAQIIAQ---AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS 539 (816)
Q Consensus 463 ak~~~rEa~ii~~---Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 539 (816)
|......+.=+.+ || .-.|+|||=-+|-|+|= |.|+
T Consensus 349 a~lep~dks~~hq~w~a~-eiqvivatvafgmgidk--------------------------------------pdvr-- 387 (695)
T KOG0353|consen 349 ANLEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDK--------------------------------------PDVR-- 387 (695)
T ss_pred cccCcccccccccccccc-ceEEEEEEeeecccCCC--------------------------------------CCee--
Confidence 8743322221111 22 34799999999999998 6777
Q ss_pred CceEEEEecCCCCcchhhh-------------------------------------------hcCccCCCCCCceEEEEe
Q psy2371 540 GGLHIIGTERHESRRIDNQ-------------------------------------------LRGRSGRQGDPGSSRFYL 576 (816)
Q Consensus 540 GGLhVI~te~pes~rid~Q-------------------------------------------~~GRtGRqGdpG~s~~~l 576 (816)
+||+-.+|.|.+.|-| -.||+||-|.|...++|.
T Consensus 388 ---fvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 388 ---FVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYY 464 (695)
T ss_pred ---EEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEe
Confidence 8999999999888888 689999999999999999
Q ss_pred ccch
Q psy2371 577 SLDD 580 (816)
Q Consensus 577 sleD 580 (816)
-+.|
T Consensus 465 ~~~d 468 (695)
T KOG0353|consen 465 GFAD 468 (695)
T ss_pred chHH
Confidence 8887
No 116
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.25 E-value=2.6e-09 Score=132.66 Aligned_cols=199 Identities=19% Similarity=0.102 Sum_probs=108.0
Q ss_pred hhHHhhhcchhcccccccch--HHHHHHHhcCe-----EEEcCCCCccc---c----ccCcCeEecChHHHHHHHHHHHH
Q psy2371 360 QNYFRMYKKISGMTGTAETE--AYEFQEIYKLE-----TITVPPNKINK---R----KDLQDKIYKTMEEKYQAILMDIK 425 (816)
Q Consensus 360 q~~f~~Y~~l~GmTGTa~te--~~e~~~~Y~l~-----vv~IPt~~p~~---r----~d~~d~v~~t~~~K~~ai~~~i~ 425 (816)
+.+|.......-++||.... -+-|.+..|++ ...+|+..+.. + .|.|+.-+.+..+-...+++.|.
T Consensus 666 ~~l~~~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~ 745 (928)
T PRK08074 666 DEFFAKKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIA 745 (928)
T ss_pred HHHHhcCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHH
Confidence 34555556677778887652 23455666663 35666544321 0 12222112233444566776665
Q ss_pred hhc-cCCCcEEEEEcccHhHHHHHHHHHhCCCC--eEEEc-CC-chHHHHHHHHHcCCCccEEEecCccccCccccCCCC
Q psy2371 426 NCY-IKEQPVLVGTTSIENSELLSNILKKNNLP--HSVLN-AK-QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGN 500 (816)
Q Consensus 426 ~~~-~~grpVLVft~si~~se~Ls~~L~~~gi~--~~vLn-ak-~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~ 500 (816)
+.. ..+.++||+++|-+..+.+++.|+..... ..++. +. ...++.-+-.+.-..++|+++|.-+.-|+|++ |+
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~p--g~ 823 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIP--GD 823 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccC--CC
Confidence 543 24457999999999999999999864321 22332 21 12344333333334578999999999999996 22
Q ss_pred c-hhh-HHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC-CCce
Q psy2371 501 I-DSY-IKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG-DPGS 571 (816)
Q Consensus 501 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG-dpG~ 571 (816)
. ..+ +-+|-=.|..+|...+..+ + .++.||-.=-.+-+|+...-..|-+||.=|.. |.|.
T Consensus 824 ~l~~viI~kLPF~~p~dp~~~a~~~-----~------~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 824 ELSCLVIVRLPFAPPDQPVMEAKSE-----W------AKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred ceEEEEEecCCCCCCCCHHHHHHHH-----H------HHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 1 000 0011000001111111111 1 11124333355667878888999999998877 6664
No 117
>KOG0951|consensus
Probab=99.21 E-value=4e-10 Score=135.96 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=79.8
Q ss_pred hhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHhcC-----------CcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 83 DVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSLSG-----------QGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL~g-----------~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
++|-.-..+.+.|. +..++||.|||-+++|.++...-.+ ..+.-+.|...|+.-....+..-...+
T Consensus 312 rIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~ 391 (1674)
T KOG0951|consen 312 RIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL 391 (1674)
T ss_pred HHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc
Confidence 46655444444443 8999999999999999998543211 134567889999984444444445677
Q ss_pred CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 149 GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
|++|+-.+|++... +...-+..|++|||-.. |-+-.+ +.+.-...-++.+|+||+|-
T Consensus 392 GI~V~ElTgD~~l~-~~qieeTqVIV~TPEK~--DiITRk---~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 392 GITVLELTGDSQLG-KEQIEETQVIVTTPEKW--DIITRK---SGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred CcEEEEecccccch-hhhhhcceeEEeccchh--hhhhcc---cCchhHHHHHHHHhhhhhhh
Confidence 99999999986522 12223568999999874 444322 11111223577889999993
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.21 E-value=6.3e-10 Score=134.53 Aligned_cols=104 Identities=27% Similarity=0.199 Sum_probs=67.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC----eEEEecCCCCHHHHHhhcCCCE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGL----SIGVNSSEISHSLKKKSYEADI 172 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl----sv~~i~~~~~~~~r~~~y~~dI 172 (816)
|..++||+|||--.-.-++...+.+.|.+++|-=|-||.|... ..+.+.+|- .||.-+-.-+ +-.-.-.|
T Consensus 69 ii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA--~RvAeel~~~~G~~VGY~iRfe~----~~s~~Tri 142 (845)
T COG1643 69 IIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVA--ERVAEELGEKLGETVGYSIRFES----KVSPRTRI 142 (845)
T ss_pred EEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHH--HHHHHHhCCCcCceeeEEEEeec----cCCCCcee
Confidence 8999999999987665555554556788888887778776553 344444444 4554332111 00112358
Q ss_pred EEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh
Q psy2371 173 TYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 173 ~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li 214 (816)
-|.|.|-| ||.-+ .+..++++.++|+||||.=.+
T Consensus 143 k~mTdGiL----lrei~----~D~~Ls~ys~vIiDEaHERSl 176 (845)
T COG1643 143 KVMTDGIL----LREIQ----NDPLLSGYSVVIIDEAHERSL 176 (845)
T ss_pred EEeccHHH----HHHHh----hCcccccCCEEEEcchhhhhH
Confidence 99999998 34322 234578999999999996443
No 119
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.18 E-value=3.5e-10 Score=137.77 Aligned_cols=131 Identities=24% Similarity=0.258 Sum_probs=99.1
Q ss_pred HHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 75 RVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 75 R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
|..|+.+.|.|..++.+|-.|. ++.++||+|||.++=.++++....|.+|.-.||...|..|-+..+...|.-.-=-+
T Consensus 114 ~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~v 193 (1041)
T COG4581 114 REYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMV 193 (1041)
T ss_pred HhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhc
Confidence 5689999999999999998887 99999999999999999887667888999999999999998887766555331123
Q ss_pred EEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 153 GVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
|+.+|+.+. .-.+.+++-|- | +||. |.+.. .-.++++.++|.||+|-|= |..|
T Consensus 194 GL~TGDv~I-----N~~A~clvMTT-E----ILRn-Mlyrg-~~~~~~i~~ViFDEvHyi~-D~eR 246 (1041)
T COG4581 194 GLMTGDVSI-----NPDAPCLVMTT-E----ILRN-MLYRG-SESLRDIEWVVFDEVHYIG-DRER 246 (1041)
T ss_pred cceecceee-----CCCCceEEeeH-H----HHHH-HhccC-cccccccceEEEEeeeecc-cccc
Confidence 555555431 11345555555 4 4565 55543 4567899999999999987 6655
No 120
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.17 E-value=4e-10 Score=110.95 Aligned_cols=129 Identities=29% Similarity=0.206 Sum_probs=94.8
Q ss_pred ccccchhhhhhhccccCC-c--eeeecCCCCchHHHHHHHHHHHhcC--CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 78 KMRHFDVQLIGGIALHYG-N--ISEMQTGEGKTLVATLAAYLNSLSG--QGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G-~--Iaem~TGEGKTL~~~Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
+..|++.|..++..++++ + +..++||+|||.+++.+++.....+ +.++|++||..++.+....+...+.......
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 467899999999887765 3 9999999999999999999766655 7899999999999988877777666555344
Q ss_pred EEecCCCC-HHH-HHhhcCC-CEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 153 GVNSSEIS-HSL-KKKSYEA-DITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 153 ~~i~~~~~-~~~-r~~~y~~-dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
..+.++.. ... +.....+ +|+++|++.+ ++.+... .....++.++||||+|.+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~ 142 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRL-LDLLEND------LLELSNVDLVILDEAHRLL 142 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHH-HHHHHcC------CcCHhHCCEEEEECHHHHh
Confidence 44444443 222 2222344 9999999887 3333322 1345678899999999987
No 121
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.14 E-value=1e-10 Score=101.38 Aligned_cols=76 Identities=25% Similarity=0.317 Sum_probs=63.7
Q ss_pred HHHHhCCCCeEEEcCCchHHHHH--HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHH
Q psy2371 449 NILKKNNLPHSVLNAKQHKLEAQ--IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526 (816)
Q Consensus 449 ~~L~~~gi~~~vLnak~~~rEa~--ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (816)
+.|+..|+++..+|++....++. +-.+.-....|+|||+++|+|+|+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~------------------------------- 49 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDL------------------------------- 49 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTS-------------------------------
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccc-------------------------------
Confidence 46889999999999986555544 333444456899999999999999
Q ss_pred HHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC
Q psy2371 527 NEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG 567 (816)
Q Consensus 527 ~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG 567 (816)
|.+. +||.++.|.|...|.|+.||+||.|
T Consensus 50 -------~~~~-----~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 50 -------PDAS-----HVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp -------TTES-----EEEESSSESSHHHHHHHHTTSSTTT
T ss_pred -------cccc-----cccccccCCCHHHHHHHhhcCCCCC
Confidence 4565 9999999999999999999999987
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.8e-08 Score=114.06 Aligned_cols=173 Identities=20% Similarity=0.200 Sum_probs=125.5
Q ss_pred chhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEE
Q psy2371 357 ITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLV 436 (816)
Q Consensus 357 It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLV 436 (816)
.+|..|-.+-++..-+|+|.+..+-|...--=..-++=||... .|.+.........+-++.+|....+.|..|||
T Consensus 377 L~feEf~~~~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLl-----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLV 451 (663)
T COG0556 377 LKFEEFEAKIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLL-----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLV 451 (663)
T ss_pred CCHHHHHHhcCCEEEEECCCChHHHHhccCceeEEeecCCCCC-----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 4566666666778889999988554433210012244466542 23344455566788899999988888888999
Q ss_pred EEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchh
Q psy2371 437 GTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISS 514 (816)
Q Consensus 437 ft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~ 514 (816)
-|-|+..||.|.++|.+.||++..||..-+.-|+.-|-..-+.| .|+|--|+.--|+||
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDi------------------- 512 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL------------------- 512 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCC-------------------
Confidence 99999999999999999999999999997777764333333444 799999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhccCceEEEEec---CCCCcchhhhhcCccCCCCCCceEEEEe
Q psy2371 515 EVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTE---RHESRRIDNQLRGRSGRQGDPGSSRFYL 576 (816)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te---~pes~rid~Q~~GRtGRqGdpG~s~~~l 576 (816)
|+|. ...+...| +..|.+.-+|-+|||||. -.|.+++|-
T Consensus 513 -------------------PEVs---LVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYA 554 (663)
T COG0556 513 -------------------PEVS---LVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYA 554 (663)
T ss_pred -------------------ccee---EEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEc
Confidence 6774 22333333 347889999999999996 457777654
No 123
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.11 E-value=6.5e-10 Score=103.06 Aligned_cols=112 Identities=29% Similarity=0.274 Sum_probs=86.5
Q ss_pred CceeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH--HHhhcCC
Q psy2371 95 GNISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL--KKKSYEA 170 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~--r~~~y~~ 170 (816)
+-+..++||+|||.++..++..... ..+.++|++||..|+.+..+.+...... ++.+..+.++..... ......+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 3478999999999999999886554 4578999999999999999888877766 788888887765433 3345688
Q ss_pred CEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh
Q psy2371 171 DITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 171 dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li 214 (816)
+|+++|++.+...+... ....+...++||||+|.+..
T Consensus 81 ~i~i~t~~~~~~~~~~~-------~~~~~~~~~iiiDE~h~~~~ 117 (144)
T cd00046 81 DIVVGTPGRLLDELERL-------KLSLKKLDLLILDEAHRLLN 117 (144)
T ss_pred CEEEECcHHHHHHHHcC-------CcchhcCCEEEEeCHHHHhh
Confidence 99999999884322221 13456789999999999873
No 124
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.07 E-value=1.2e-08 Score=123.24 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=106.9
Q ss_pred hhHHhhhcchhcccccccch--HHHHHHHhcCe------EEEcCCCCcccc---ccCcCeEe--cChHHHHHHHHHHHHh
Q psy2371 360 QNYFRMYKKISGMTGTAETE--AYEFQEIYKLE------TITVPPNKINKR---KDLQDKIY--KTMEEKYQAILMDIKN 426 (816)
Q Consensus 360 q~~f~~Y~~l~GmTGTa~te--~~e~~~~Y~l~------vv~IPt~~p~~r---~d~~d~v~--~t~~~K~~ai~~~i~~ 426 (816)
..+|..+....-++||+... -+-|.+.-|++ .+.+|+..+... .--|+..+ .+..+-..++++.|.+
T Consensus 450 ~~l~~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 450 RLLWSRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred HHHHhhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 35566667778889998753 24455656763 466776654311 11122111 1344556677777765
Q ss_pred hccCCCcEEEEEcccHhHHHHHHHHHhC-CCCeEEEcCCchHHHHHHHHHc----CCCccEEEecCccccCccccCCCC-
Q psy2371 427 CYIKEQPVLVGTTSIENSELLSNILKKN-NLPHSVLNAKQHKLEAQIIAQA----GHPKMITIATNMAGRGTDIILGGN- 500 (816)
Q Consensus 427 ~~~~grpVLVft~si~~se~Ls~~L~~~-gi~~~vLnak~~~rEa~ii~~A----g~~g~VtIATnmAGRGtDI~l~g~- 500 (816)
....+..+||+++|-+..+.++..|... +.+. ...+. ..+++-+-.+. ...+.|+++|.-..=|+|++ |+
T Consensus 530 l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~-~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~p--Gd~ 605 (697)
T PRK11747 530 LLEKHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD-QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLP--GDY 605 (697)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC-chHHHHHHHHHHHhccCCCeEEEEeccccccccCC--CCc
Confidence 5443434899999999999999999753 3332 22333 23333222111 23578999999999999996 22
Q ss_pred chhhH-HHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC-CCce
Q psy2371 501 IDSYI-KDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG-DPGS 571 (816)
Q Consensus 501 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG-dpG~ 571 (816)
....+ -+| |=..|. +. +.+.+.+|-+ +.||----.+.+|+...-..|-+||.=|.. |.|.
T Consensus 606 l~~vII~kL---PF~~p~-dp-~~~ar~~~~~------~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~ 667 (697)
T PRK11747 606 LTQVIITKI---PFAVPD-SP-VEATLAEWLK------SRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR 667 (697)
T ss_pred eEEEEEEcC---CCCCCC-CH-HHHHHHHHHH------HhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE
Confidence 11000 011 100010 01 1111111111 123322223455666667899999998864 7774
No 125
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.05 E-value=1.6e-08 Score=119.83 Aligned_cols=60 Identities=25% Similarity=0.161 Sum_probs=50.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHHHHHHHHh-hhcC--CeEEEec
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDAEWMSVLY-NWLG--LSIGVNS 156 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~e~~~~l~-~~lg--lsv~~i~ 156 (816)
++|++||+|||++|++|++..+. .++.|+|.|||.+|+.|..+.+..+- +.++ +++.++.
T Consensus 20 liEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lk 84 (636)
T TIGR03117 20 MLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFP 84 (636)
T ss_pred EEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 89999999999999999987766 47889999999999999999888777 5554 5555543
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.05 E-value=8.6e-09 Score=123.93 Aligned_cols=107 Identities=24% Similarity=0.178 Sum_probs=66.6
Q ss_pred eeeecCCCCchHHHHHHHHH--HHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH-HHH--hhcCCC
Q psy2371 97 ISEMQTGEGKTLVATLAAYL--NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS-LKK--KSYEAD 171 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l--~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~-~r~--~~y~~d 171 (816)
+..|.||+|||++++..+.. ..+.+..|+|||+...|..|-.+.+..+.. . +.....+.. -+. ....++
T Consensus 267 li~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~----~--~~~~~~s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 267 LIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK----D--CAERIESIAELKRLLEKDDGG 340 (667)
T ss_pred EEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC----C--CCcccCCHHHHHHHHhCCCCC
Confidence 99999999999998877653 224556799999999999998887776532 1 111111211 111 223478
Q ss_pred EEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 172 ITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 172 I~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
|+++|...|.- .+.+.+. .....+.-.++|+||||+.-
T Consensus 341 iivtTiQk~~~-~~~~~~~---~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 341 IIITTIQKFDK-KLKEEEE---KFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred EEEEEhHHhhh-hHhhhhh---ccCCCCCCEEEEEEcCcccc
Confidence 99999988731 1111110 00111222389999999754
No 127
>KOG0923|consensus
Probab=98.98 E-value=3e-08 Score=114.20 Aligned_cols=123 Identities=23% Similarity=0.308 Sum_probs=79.4
Q ss_pred HHHHHHHhccccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHH--hc--CCcEEEEeCcHH----HHHHHHHHH
Q psy2371 70 REASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNS--LS--GQGVHIVTISDY----LAKRDAEWM 141 (816)
Q Consensus 70 rea~~R~lg~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~a--L~--g~~V~VvT~n~y----LA~Rd~e~~ 141 (816)
-+..++.|...+|.-+++.++.=|+=-|+.+.||+|||- -+|-||+- .+ |+.+-|--|-|. -|.|.+++|
T Consensus 257 iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 257 IEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 356789999999999999888766666999999999996 46777642 22 333444445554 345555555
Q ss_pred HHHhhhcCCeEEEecC--CCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 142 SVLYNWLGLSIGVNSS--EISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 142 ~~l~~~lglsv~~i~~--~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
+ -.||-.||.-+- +-.. + .--|-|-|-|=| ||..+ .+..+....++||||||.
T Consensus 335 g---vkLG~eVGYsIRFEdcTS-e-----kTvlKYMTDGmL----lREfL----~epdLasYSViiiDEAHE 389 (902)
T KOG0923|consen 335 G---VKLGHEVGYSIRFEDCTS-E-----KTVLKYMTDGML----LREFL----SEPDLASYSVIIVDEAHE 389 (902)
T ss_pred C---cccccccceEEEeccccC-c-----ceeeeeecchhH----HHHHh----ccccccceeEEEeehhhh
Confidence 3 233444442211 1111 1 123778899887 55544 244567899999999995
No 128
>KOG0922|consensus
Probab=98.97 E-value=1.3e-08 Score=117.90 Aligned_cols=96 Identities=31% Similarity=0.414 Sum_probs=62.5
Q ss_pred eeeecCCCCchHHHHHHHHHH--HhcCCcEEEEeC-cH----HHHHHHHHHHHHHhhhcCCeEEEecC--CCCHHHHHhh
Q psy2371 97 ISEMQTGEGKTLVATLAAYLN--SLSGQGVHIVTI-SD----YLAKRDAEWMSVLYNWLGLSIGVNSS--EISHSLKKKS 167 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~--aL~g~~V~VvT~-n~----yLA~Rd~e~~~~l~~~lglsv~~i~~--~~~~~~r~~~ 167 (816)
|+.+.||+|||-= +|=|+. ..+..|.+.+|- -| -||+|.+++|+ ..+|=.||.-+. +.+.+
T Consensus 70 IviGeTGsGKSTQ--ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~---~~lG~~VGY~IRFed~ts~----- 139 (674)
T KOG0922|consen 70 IVIGETGSGKSTQ--IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMG---CQLGEEVGYTIRFEDSTSK----- 139 (674)
T ss_pred EEEcCCCCCcccc--HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhC---CCcCceeeeEEEecccCCC-----
Confidence 8999999999964 455542 234445444443 32 48999999875 345556664432 21111
Q ss_pred cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 168 YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 168 y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
.--|.|-|-|=| ||.-|. +..+++..++||||||.
T Consensus 140 -~TrikymTDG~L----LRE~l~----Dp~LskYsvIIlDEAHE 174 (674)
T KOG0922|consen 140 -DTRIKYMTDGML----LREILK----DPLLSKYSVIILDEAHE 174 (674)
T ss_pred -ceeEEEecchHH----HHHHhc----CCccccccEEEEechhh
Confidence 235999999987 565542 34578999999999994
No 129
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.92 E-value=5.7e-08 Score=116.30 Aligned_cols=114 Identities=22% Similarity=0.159 Sum_probs=85.3
Q ss_pred cchhhhhhhccccCC---c---eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 81 HFDVQLIGGIALHYG---N---ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G---~---Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
..+.|..+.-.+... . +..+-||||||-+|+=.+--..-.|++|+|+.|--.|--|..+ .|-..+|.++++
T Consensus 199 Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~---rf~~rFg~~v~v 275 (730)
T COG1198 199 LNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLA---RFKARFGAKVAV 275 (730)
T ss_pred cCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHH---HHHHHhCCChhh
Confidence 345666666555322 2 8999999999999876666333469999999999998887665 455667799999
Q ss_pred ecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 155 NSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 155 i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
..+++++.+|... -.+.||+||=+-+ | .-..++..+||||=|.
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F-------------~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSAL-F-------------LPFKNLGLIIVDEEHD 324 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhh-c-------------CchhhccEEEEecccc
Confidence 9999998776543 2579999999876 1 1245788999998763
No 130
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.88 E-value=4.5e-09 Score=90.07 Aligned_cols=79 Identities=25% Similarity=0.214 Sum_probs=65.6
Q ss_pred HHHHHHHhCCCCeEEEcCCch--HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHH
Q psy2371 446 LLSNILKKNNLPHSVLNAKQH--KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIK 523 (816)
Q Consensus 446 ~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 523 (816)
.++..|...++++.++|+... +++..+..+......|+|+|+++++|+|++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~--------------------------- 54 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLP--------------------------- 54 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChh---------------------------
Confidence 577888889999999999744 444444445555668999999999999994
Q ss_pred HHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC
Q psy2371 524 KLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG 567 (816)
Q Consensus 524 ~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG 567 (816)
.+. +||.++.|.+...+.|++||++|.|
T Consensus 55 -----------~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 55 -----------GVD-----LVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -----------cCC-----EEEEeCCCCCHHHHHHhhcccccCC
Confidence 444 9999999999999999999999987
No 131
>KOG0948|consensus
Probab=98.88 E-value=1.1e-08 Score=118.88 Aligned_cols=119 Identities=25% Similarity=0.288 Sum_probs=85.7
Q ss_pred chhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCC
Q psy2371 82 FDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSE 158 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~ 158 (816)
-|.|..++..+-.|. ++-+.|-.|||.+|--++. .+|..+ .|+--+|=..|..|-+.++..=|.-.||-+|-++=
T Consensus 131 DpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI- 208 (1041)
T KOG0948|consen 131 DPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI- 208 (1041)
T ss_pred CchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee-
Confidence 378999999888777 9999999999999988888 466655 58888899999999998887766655555542221
Q ss_pred CCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 159 ISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 159 ~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
+| .+.-.+-|- ..||. |.+. +.-++|.+.++|.||+|-|= |.-|
T Consensus 209 -nP-------~ASCLVMTT-----EILRs-MLYR-GSEvmrEVaWVIFDEIHYMR-DkER 252 (1041)
T KOG0948|consen 209 -NP-------DASCLVMTT-----EILRS-MLYR-GSEVMREVAWVIFDEIHYMR-DKER 252 (1041)
T ss_pred -CC-------CCceeeeHH-----HHHHH-HHhc-cchHhheeeeEEeeeehhcc-cccc
Confidence 11 122333333 23454 5454 44578999999999999998 6544
No 132
>KOG0950|consensus
Probab=98.85 E-value=6.3e-08 Score=115.71 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=99.5
Q ss_pred HHHHHHHHhcc-ccchhhhhhh--ccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHH
Q psy2371 69 CREASKRVLKM-RHFDVQLIGG--IALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 69 vrea~~R~lg~-~p~~VQ~~~~--~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
++...+...|. .+|+.|..|. +.+++|+ |--.+|+-|||||+.+.++...|. ++.|..+-|=-.-++--.+.+.
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhh
Confidence 34444444554 7899999886 4556655 888999999999999999987775 5556666655555555667789
Q ss_pred HHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 143 VLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 143 ~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
++..-+|+.|-.-.|..+|+.+++ .-+|.++|--. +.-...-.+. .-.+..+..++|||.|-+. |..|
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~~~k--~~sv~i~tiEk-anslin~lie----~g~~~~~g~vvVdElhmi~-d~~r 358 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEKRRK--RESVAIATIEK-ANSLINSLIE----QGRLDFLGMVVVDELHMIG-DKGR 358 (1008)
T ss_pred hhccccCCcchhhcccCCCCCccc--ceeeeeeehHh-hHhHHHHHHh----cCCccccCcEEEeeeeeee-cccc
Confidence 999999999988888877766554 34788888744 2222222221 2233467899999988765 8765
No 133
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.85 E-value=1.4e-07 Score=111.95 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=76.1
Q ss_pred cchhhhhhhc----cccCCc---eeeecCCCCchHHHHHHHHHHHhcC--CcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 81 HFDVQLIGGI----ALHYGN---ISEMQTGEGKTLVATLAAYLNSLSG--QGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 81 p~~VQ~~~~~----~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
|.+-|..|+- ++++|+ +..|.||+|||-+|.--+....-+| +.|+.++=...|-.|-++.+..+.-+ |=.
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~ 244 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-GTK 244 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-ccc
Confidence 4444555553 346776 9999999999998877666544455 58999999999999988765544332 222
Q ss_pred EEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccC-CC--ccccccceEEEecchhhhh
Q psy2371 152 IGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFN-SN--DRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 152 v~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~-~~--~~~~r~~~~~IvDEaDs~L 213 (816)
+..+.+. ...-.|.|.++|--.+. ...... .. ......|+++||||||+=.
T Consensus 245 ~n~i~~~------~~~~s~~i~lsTyqt~~-----~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi 298 (875)
T COG4096 245 MNKIEDK------KGDTSSEIYLSTYQTMT-----GRIEQKEDEYRRFGPGFFDLIVIDEAHRGI 298 (875)
T ss_pred eeeeecc------cCCcceeEEEeehHHHH-----hhhhccccccccCCCCceeEEEechhhhhH
Confidence 2222211 11115789999887762 222211 11 1122348999999999754
No 134
>KOG0947|consensus
Probab=98.69 E-value=3.2e-07 Score=109.32 Aligned_cols=127 Identities=23% Similarity=0.241 Sum_probs=96.9
Q ss_pred HHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 75 RVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 75 R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
+..+++|-..|..|+..|..|. .+-+.|-.|||++|=-++.+.--.+....--+|=..|..|-+..|..-|.--|
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg--- 368 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG--- 368 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc---
Confidence 3467888899999999999998 88999999999998888777666678888899999999998888888777555
Q ss_pred EEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 153 GVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
+++|+.. ..-.+.+++-|- | .||. |.++.. -+.|.+.++|.||||=+= |.-|
T Consensus 369 -LlTGDvq-----inPeAsCLIMTT-E----ILRs-MLYrga-dliRDvE~VIFDEVHYiN-D~eR 420 (1248)
T KOG0947|consen 369 -LLTGDVQ-----INPEASCLIMTT-E----ILRS-MLYRGA-DLIRDVEFVIFDEVHYIN-DVER 420 (1248)
T ss_pred -eeeccee-----eCCCcceEeehH-H----HHHH-HHhccc-chhhccceEEEeeeeecc-cccc
Confidence 6666542 111345677665 2 3454 555543 356889999999999876 6544
No 135
>KOG0924|consensus
Probab=98.65 E-value=1.1e-06 Score=101.65 Aligned_cols=98 Identities=29% Similarity=0.366 Sum_probs=59.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH-----HHHHHHHHHHHHHhhhcCCeEEEecC--CCCHHHHHhhcC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD-----YLAKRDAEWMSVLYNWLGLSIGVNSS--EISHSLKKKSYE 169 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~-----yLA~Rd~e~~~~l~~~lglsv~~i~~--~~~~~~r~~~y~ 169 (816)
|+-+.||+|||--.+==+|...-...|.+.+|--| .+|+|.+++|+ --||=+||.-+- +.+. -.
T Consensus 375 vivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~---~~lG~~VGYsIRFEdvT~------~~ 445 (1042)
T KOG0924|consen 375 VIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG---VTLGDTVGYSIRFEDVTS------ED 445 (1042)
T ss_pred EEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC---CccccccceEEEeeecCC------Cc
Confidence 78899999999754433333222334555555433 36677777763 233444443221 1111 12
Q ss_pred CCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
--|-|-|-|=| ||..+. +..+.+..++|+||||.
T Consensus 446 T~IkymTDGiL----LrEsL~----d~~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 446 TKIKYMTDGIL----LRESLK----DRDLDKYSVIIMDEAHE 479 (1042)
T ss_pred eeEEEeccchH----HHHHhh----hhhhhheeEEEechhhh
Confidence 35889999987 565542 34567899999999995
No 136
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.58 E-value=4.1e-06 Score=100.76 Aligned_cols=69 Identities=28% Similarity=0.151 Sum_probs=57.0
Q ss_pred Hhccccchhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 76 VLKMRHFDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
..|+.|+|-|...+- ++.+|+ ++||+||+|||+++++|++..+.. |+.|+|.|.|.-|=.|..+...++
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 467899999987663 345555 999999999999999999987764 588999999998888877777665
No 137
>KOG0920|consensus
Probab=98.57 E-value=1.1e-06 Score=106.74 Aligned_cols=102 Identities=24% Similarity=0.238 Sum_probs=64.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHh-cCCcE-EEEeCcH-----HHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL-SGQGV-HIVTISD-----YLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYE 169 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V-~VvT~n~-----yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~ 169 (816)
++-+.||+|||-=..-=++-++. .|..+ .|+|-=| .+|.|.+.+- ...+|-+||.-+...+ +....
T Consensus 192 vIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER---~~~~g~~VGYqvrl~~----~~s~~ 264 (924)
T KOG0920|consen 192 VISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKER---GESLGEEVGYQVRLES----KRSRE 264 (924)
T ss_pred EEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHh---ccccCCeeeEEEeeec----ccCCc
Confidence 89999999999643222222332 33334 3333333 5777777654 6678888887665422 22234
Q ss_pred CCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.-++|+|.|-| +.+ +. ....+.+...+||||||.==
T Consensus 265 t~L~fcTtGvL-Lr~----L~---~~~~l~~vthiivDEVHER~ 300 (924)
T KOG0920|consen 265 TRLLFCTTGVL-LRR----LQ---SDPTLSGVTHIIVDEVHERS 300 (924)
T ss_pred eeEEEecHHHH-HHH----hc---cCcccccCceeeeeeEEEcc
Confidence 56999999987 333 32 14567789999999999643
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.54 E-value=1.3e-07 Score=93.38 Aligned_cols=134 Identities=18% Similarity=0.075 Sum_probs=78.2
Q ss_pred cccchhhhhhhcccc--------CCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 79 MRHFDVQLIGGIALH--------YGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~--------~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
+.++|-|..++-.+. .++ +..|+||+|||.+++..+... . . .+.++|||..|+.|-.+.+..+.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~-~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-A-R-KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-H-C-EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-c-c-ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 456777777776554 233 999999999999998655422 2 2 999999999999998887754443321
Q ss_pred CeEEEec-----------CC--CCHHHHHhhcCCCEEEECCCcchhhhhhhhhcc----CCCccccccceEEEecchhhh
Q psy2371 150 LSIGVNS-----------SE--ISHSLKKKSYEADITYGTNNEFGFDYLRDNMVF----NSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 150 lsv~~i~-----------~~--~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~----~~~~~~~r~~~~~IvDEaDs~ 212 (816)
....... .. ............+|.+.|...+.-..-...... ...........++|+||||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 1111111 00 112222334467899999988743321110000 000122346789999999998
Q ss_pred hhh
Q psy2371 213 LID 215 (816)
Q Consensus 213 LiD 215 (816)
-.+
T Consensus 159 ~~~ 161 (184)
T PF04851_consen 159 PSD 161 (184)
T ss_dssp HHH
T ss_pred CCH
Confidence 744
No 139
>KOG0925|consensus
Probab=98.48 E-value=7.8e-07 Score=99.86 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=65.6
Q ss_pred HHHHh-cCeEEEcCCCCccccccCcCeEecC--hHHHHHHHHHHHHhhccCCCc--EEEEEcccHhHHHHHHHHHhC---
Q psy2371 383 FQEIY-KLETITVPPNKINKRKDLQDKIYKT--MEEKYQAILMDIKNCYIKEQP--VLVGTTSIENSELLSNILKKN--- 454 (816)
Q Consensus 383 ~~~~Y-~l~vv~IPt~~p~~r~d~~d~v~~t--~~~K~~ai~~~i~~~~~~grp--VLVft~si~~se~Ls~~L~~~--- 454 (816)
|+..| |.+++.||-..|+-+ +|.. +++.++|.++.+.+.|-.+-| ||||-+.-+.-|...+.+...
T Consensus 206 fq~yf~n~Pll~vpg~~PvEi------~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~ 279 (699)
T KOG0925|consen 206 FQRYFGNAPLLAVPGTHPVEI------FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDN 279 (699)
T ss_pred HHHHhCCCCeeecCCCCceEE------EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHh
Confidence 33333 456788885444332 4433 356788888888887754433 999999998888777766632
Q ss_pred ----C--CCeEEEcCCchHH--HHHHHHHcCCCc-cEEEecCccccCccc
Q psy2371 455 ----N--LPHSVLNAKQHKL--EAQIIAQAGHPK-MITIATNMAGRGTDI 495 (816)
Q Consensus 455 ----g--i~~~vLnak~~~r--Ea~ii~~Ag~~g-~VtIATnmAGRGtDI 495 (816)
+ +.+..|+-.+.++ |..=....|..| +|.|+||+|-=-+-|
T Consensus 280 L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 280 LGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred hccccCCceEEecCchhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 1 3355555443333 221122234444 699999999766655
No 140
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.37 E-value=4.2e-05 Score=92.02 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=72.6
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcC-CeEEEecCCCCHHHHHhhc------CCCE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLG-LSIGVNSSEISHSLKKKSY------EADI 172 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg-lsv~~i~~~~~~~~r~~~y------~~dI 172 (816)
+-+|+|||-+|+=.+-...-.|++|+|+.|.-.|+.|..+-+. ..|| -.|++..+++++.+|...+ .+.|
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~---~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALR---ALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHH---HHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 3469999999987776444469999999999999998776554 5556 7899999999998887655 4689
Q ss_pred EEECCCcchhhhhhhhhccCCCccccccceEEEecchh
Q psy2371 173 TYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210 (816)
Q Consensus 173 ~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaD 210 (816)
++||-+-+ | .-..++..+||||=|
T Consensus 244 ViGtRSAv-F-------------aP~~~LgLIIvdEEh 267 (665)
T PRK14873 244 VVGTRSAV-F-------------APVEDLGLVAIWDDG 267 (665)
T ss_pred EEEcceeE-E-------------eccCCCCEEEEEcCC
Confidence 99999886 1 123467788888765
No 141
>KOG0385|consensus
Probab=98.34 E-value=2.6e-05 Score=91.95 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC--chHHHHHHHHHcCCCc---cEEEec
Q psy2371 412 TMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK--QHKLEAQIIAQAGHPK---MITIAT 486 (816)
Q Consensus 412 t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak--~~~rEa~ii~~Ag~~g---~VtIAT 486 (816)
+...|+.-+=+.+...++.|..||||..-...-+.|-.+.--+|+...-|+|. ..+|+++|-++.-.+. -.+++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 34567765556666778899999999999999999999999999999999997 5678888877644332 358999
Q ss_pred CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC
Q psy2371 487 NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 487 nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq 566 (816)
.-.|=|+.... .. .||-||--=++-.|.|..-||-|-
T Consensus 548 RAGGLGINL~a--------------------------------------AD-----tVIlyDSDWNPQ~DLQAmDRaHRI 584 (971)
T KOG0385|consen 548 RAGGLGINLTA--------------------------------------AD-----TVILYDSDWNPQVDLQAMDRAHRI 584 (971)
T ss_pred ccccccccccc--------------------------------------cc-----EEEEecCCCCchhhhHHHHHHHhh
Confidence 99999987742 11 799999999999999999999999
Q ss_pred CCCceEEEE
Q psy2371 567 GDPGSSRFY 575 (816)
Q Consensus 567 GdpG~s~~~ 575 (816)
|+.-..+.|
T Consensus 585 GQ~K~V~V~ 593 (971)
T KOG0385|consen 585 GQKKPVVVY 593 (971)
T ss_pred CCcCceEEE
Confidence 998877665
No 142
>KOG0949|consensus
Probab=98.19 E-value=9.8e-06 Score=97.22 Aligned_cols=135 Identities=11% Similarity=0.098 Sum_probs=89.6
Q ss_pred HHhccccchhhhhhhccccCCc--eeeecCCCCchHH--HHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 75 RVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLV--ATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 75 R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~--~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
|+.++.|-.-|..-.-..-.+. ++-++|-.|||-+ +++=..+.--...-|+-+.|++.|..|++..+..-|..--+
T Consensus 506 RV~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 506 RVHDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred chhccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 5666777777777665555555 8899999999976 33333433223345778999999999999887666643322
Q ss_pred -eEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCC-CccccccceEEEecchhhhhh
Q psy2371 151 -SIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNS-NDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 151 -sv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~-~~~~~r~~~~~IvDEaDs~Li 214 (816)
+-..++|.++.+=+....+|.|.++-|.=+ ...|...+ ....-...+|+|.||||.+--
T Consensus 586 ~rg~sl~g~ltqEYsinp~nCQVLITvPecl-----eslLlspp~~q~~cerIRyiIfDEVH~iG~ 646 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYSINPWNCQVLITVPECL-----ESLLLSPPHHQKFCERIRYIIFDEVHLIGN 646 (1330)
T ss_pred ccchhhHhhhhHHhcCCchhceEEEEchHHH-----HHHhcCchhhhhhhhcceEEEechhhhccc
Confidence 223445666666555566899999888543 22222111 223346789999999998853
No 143
>KOG0387|consensus
Probab=98.16 E-value=0.00021 Score=84.82 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=97.4
Q ss_pred ecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH-hCCCCeEEEcCCch--HHHHHHHHH-cCCCcc-EEE
Q psy2371 410 YKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK-KNNLPHSVLNAKQH--KLEAQIIAQ-AGHPKM-ITI 484 (816)
Q Consensus 410 ~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~-~~gi~~~vLnak~~--~rEa~ii~~-Ag~~g~-VtI 484 (816)
......|...+...+..-+++|..||+|+.|...-..|-..|. ..|+.+.-+.|... .|-.-|-.+ ++..-. .++
T Consensus 525 ~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLL 604 (923)
T KOG0387|consen 525 DPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLL 604 (923)
T ss_pred ChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEE
Confidence 3445679999999998889999999999999999999999999 68999999999743 344333333 232323 489
Q ss_pred ecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccC
Q psy2371 485 ATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSG 564 (816)
Q Consensus 485 ATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtG 564 (816)
+|-+.|-|+... |---||-+|.-=++..|+|.+-|+=
T Consensus 605 TTrvGGLGlNLT-------------------------------------------gAnRVIIfDPdWNPStD~QAreRaw 641 (923)
T KOG0387|consen 605 TTRVGGLGLNLT-------------------------------------------GANRVIIFDPDWNPSTDNQARERAW 641 (923)
T ss_pred Eecccccccccc-------------------------------------------cCceEEEECCCCCCccchHHHHHHH
Confidence 999999999873 1227999999999999999999999
Q ss_pred CCCCCceEEEE
Q psy2371 565 RQGDPGSSRFY 575 (816)
Q Consensus 565 RqGdpG~s~~~ 575 (816)
|-|+.--...|
T Consensus 642 RiGQkkdV~VY 652 (923)
T KOG0387|consen 642 RIGQKKDVVVY 652 (923)
T ss_pred hhcCccceEEE
Confidence 99987655443
No 144
>KOG0389|consensus
Probab=98.04 E-value=0.00025 Score=84.17 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHH-HHHHHH-cCCCc--cEEEecCcc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLE-AQIIAQ-AGHPK--MITIATNMA 489 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rE-a~ii~~-Ag~~g--~VtIATnmA 489 (816)
..|+..+...+.+..+.|-.||||..-...-+.|--.|.-.|+..--|.|...-.. ..+|.+ -+-.. ..+++|--.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 56888888888777788999999999999999999999999999999999843333 345554 33222 358899999
Q ss_pred ccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCC
Q psy2371 490 GRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDP 569 (816)
Q Consensus 490 GRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdp 569 (816)
|=|+.... . -+||-+|..-++-.|.|.--|+-|-|+.
T Consensus 840 G~GINLt~--------------------------------------A-----n~VIihD~dFNP~dD~QAEDRcHRvGQt 876 (941)
T KOG0389|consen 840 GFGINLTC--------------------------------------A-----NTVIIHDIDFNPYDDKQAEDRCHRVGQT 876 (941)
T ss_pred cceecccc--------------------------------------c-----ceEEEeecCCCCcccchhHHHHHhhCCc
Confidence 99987742 2 2899999999999999999999998876
Q ss_pred ceEE
Q psy2371 570 GSSR 573 (816)
Q Consensus 570 G~s~ 573 (816)
-...
T Consensus 877 kpVt 880 (941)
T KOG0389|consen 877 KPVT 880 (941)
T ss_pred ceeE
Confidence 6543
No 145
>KOG0926|consensus
Probab=98.00 E-value=0.00017 Score=85.57 Aligned_cols=112 Identities=26% Similarity=0.284 Sum_probs=66.3
Q ss_pred ccchhhhhh--hccc----------cCCc--eeeecCCCCchHHHHHHHHHH-H-hc-----CCcEEEEe-CcHH----H
Q psy2371 80 RHFDVQLIG--GIAL----------HYGN--ISEMQTGEGKTLVATLAAYLN-S-LS-----GQGVHIVT-ISDY----L 133 (816)
Q Consensus 80 ~p~~VQ~~~--~~~L----------~~G~--Iaem~TGEGKTL~~~Lpa~l~-a-L~-----g~~V~VvT-~n~y----L 133 (816)
||..||.-- .|++ +.+- |+.+.||+|||-- +|-+|. | .. ..|.+=|| |-|. .
T Consensus 244 R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred CcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 677788542 2322 3443 8999999999964 344432 1 11 12333333 4443 5
Q ss_pred HHHHHHHHHHHhhhcCCeEEEec--CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 134 AKRDAEWMSVLYNWLGLSIGVNS--SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 134 A~Rd~e~~~~l~~~lglsv~~i~--~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
|+|.+.+++. +|-.|+.-+ .|. ..-+..|-+-|-|=| ||.-+ .+..+++..++||||||.
T Consensus 322 AkRVa~EL~~----~~~eVsYqIRfd~t------i~e~T~IkFMTDGVL----LrEi~----~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 322 AKRVAFELGV----LGSEVSYQIRFDGT------IGEDTSIKFMTDGVL----LREIE----NDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred HHHHHHHhcc----CccceeEEEEeccc------cCCCceeEEecchHH----HHHHH----HhHhhhhceeEEechhhh
Confidence 6777777664 455555432 221 011346899999876 45432 356678999999999994
No 146
>KOG1123|consensus
Probab=97.94 E-value=0.00012 Score=82.86 Aligned_cols=332 Identities=19% Similarity=0.196 Sum_probs=180.1
Q ss_pred chhhhhhhccc-cCCc----eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 82 FDVQLIGGIAL-HYGN----ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 82 ~~VQ~~~~~~L-~~G~----Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
.|-|..+.--+ -+|+ |+--+-|.||||+-.-++.. -.+.|+|+|.|-.=.. +|-.+|..|..+.-.-++
T Consensus 304 RpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t---ikK~clvLcts~VSVe---QWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 304 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT---IKKSCLVLCTSAVSVE---QWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred CchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee---ecccEEEEecCccCHH---HHHHHHHhhcccCccceE
Confidence 35677776544 3565 88899999999987655441 2578999998865554 466677777665443332
Q ss_pred CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccC-CCccccccceEEEecchhhhhhhccCCcceeccccccchhhhH
Q psy2371 157 SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFN-SNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFY 235 (816)
Q Consensus 157 ~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~-~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~ 235 (816)
-=.+...-+.--+|.|+++|-+=+++--=|..=+.. -+.+.-+.-.++|+||||.+-.-+ |.
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M-----------------FR 440 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM-----------------FR 440 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH-----------------HH
Confidence 211111111224789999998766432111100000 011223567899999999886443 44
Q ss_pred HHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeE
Q psy2371 236 KIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKI 315 (816)
Q Consensus 236 ~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v 315 (816)
.+-.++..-- .+-||++-. + .|++|
T Consensus 441 -RVlsiv~aHc-----------------------------KLGLTATLv------------------R-------EDdKI 465 (776)
T KOG1123|consen 441 -RVLSIVQAHC-----------------------------KLGLTATLV------------------R-------EDDKI 465 (776)
T ss_pred -HHHHHHHHHh-----------------------------hccceeEEe------------------e-------ccccc
Confidence 3333333211 011111100 0 01111
Q ss_pred EEeecccccccccccchhhhhHHHhccccc-eeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEc
Q psy2371 316 IIVDEFTGRLMKTRRWAEGLHQALEAKENL-EIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITV 394 (816)
Q Consensus 316 ~ivD~~tGr~~~grr~s~GLhQaieaKe~v-~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~I 394 (816)
.-+.-.-|--+....|.+ |+ .|-.+ +++. -+-.++||+ ||..-| +..
T Consensus 466 ~DLNFLIGPKlYEAnWmd-L~----~kGhIA~VqC----------------aEVWCpMt~-------eFy~eY----L~~ 513 (776)
T KOG1123|consen 466 TDLNFLIGPKLYEANWMD-LQ----KKGHIAKVQC----------------AEVWCPMTP-------EFYREY----LRE 513 (776)
T ss_pred cccceeecchhhhccHHH-HH----hCCceeEEee----------------eeeecCCCH-------HHHHHH----Hhh
Confidence 111111122222233432 11 11000 0110 012344442 344444 222
Q ss_pred CCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHH
Q psy2371 395 PPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIA 474 (816)
Q Consensus 395 Pt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~ 474 (816)
+|.+. -.+|.-...||.+---.|+-....|-.++||..++-.....+-.|.+- .+-|...+.|+--|.
T Consensus 514 ~t~kr-------~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~IL 581 (776)
T KOG1123|consen 514 NTRKR-------MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKIL 581 (776)
T ss_pred hhhhh-------heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHH
Confidence 33221 245666778898655555444457889999999998877777766553 456777778887778
Q ss_pred HcCCCcc---EEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCC-
Q psy2371 475 QAGHPKM---ITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERH- 550 (816)
Q Consensus 475 ~Ag~~g~---VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~p- 550 (816)
+.++-+. -+.-.-++---+|+ |+.. ..|+.--|
T Consensus 582 qnFq~n~~vNTIFlSKVgDtSiDL--------------------------------------PEAn-----vLIQISSH~ 618 (776)
T KOG1123|consen 582 QNFQTNPKVNTIFLSKVGDTSIDL--------------------------------------PEAN-----VLIQISSHG 618 (776)
T ss_pred HhcccCCccceEEEeeccCccccC--------------------------------------Cccc-----EEEEEcccc
Confidence 8877552 12234555556666 3343 45555444
Q ss_pred CCcchhhhhcCccC---CCCCCceEEEEecc
Q psy2371 551 ESRRIDNQLRGRSG---RQGDPGSSRFYLSL 578 (816)
Q Consensus 551 es~rid~Q~~GRtG---RqGdpG~s~~~lsl 578 (816)
-|+|.+-||-||-= |-.++|.--||-||
T Consensus 619 GSRRQEAQRLGRILRAKk~~de~fnafFYSL 649 (776)
T KOG1123|consen 619 GSRRQEAQRLGRILRAKKRNDEEFNAFFYSL 649 (776)
T ss_pred cchHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 68999999999754 45678888888886
No 147
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.79 E-value=4.3e-05 Score=83.33 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=52.4
Q ss_pred hccccchhhhh----hhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CC-----cEEEEeCcHHHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLI----GGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQ-----GVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 77 lg~~p~~VQ~~----~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~-----~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
+.+.|+|.|.. ..-.+.+|. |+||+||+|||+++++|++..+.. +. .+.++|.|..+..|....+..+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45678999988 333455565 999999999999999999755443 33 6999999999988887666654
No 148
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.79 E-value=4.3e-05 Score=83.33 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=52.4
Q ss_pred hccccchhhhh----hhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CC-----cEEEEeCcHHHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLI----GGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQ-----GVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 77 lg~~p~~VQ~~----~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~-----~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
+.+.|+|.|.. ..-.+.+|. |+||+||+|||+++++|++..+.. +. .+.++|.|..+..|....+..+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45678999988 333455565 999999999999999999755443 33 6999999999988887666654
No 149
>KOG0384|consensus
Probab=97.73 E-value=0.00068 Score=83.76 Aligned_cols=394 Identities=18% Similarity=0.261 Sum_probs=213.1
Q ss_pred ccccchhhhhhhccc----cCCc--eeeecCCCCchHH-HHHHH-HHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 78 KMRHFDVQLIGGIAL----HYGN--ISEMQTGEGKTLV-ATLAA-YLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L----~~G~--Iaem~TGEGKTL~-~~Lpa-~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
|....+-|+.|.=-| +.+. |.-=.-|=|||+- .++.. +.+.+.-. +.+||+|=-+++. |-+.|-.|.
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~----W~~ef~~w~ 443 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA----WEREFETWT 443 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH----HHHHHHHHh
Confidence 345668898887433 2343 6656679999973 22222 22333222 3788888777654 999999999
Q ss_pred CCeEEEecCCCCHHHHHhhcCCCEEEEC-CCcchhhhhhhhhcc---CCCccccccceEEEecchhhhhhhc--------
Q psy2371 149 GLSIGVNSSEISHSLKKKSYEADITYGT-NNEFGFDYLRDNMVF---NSNDRVQRKLNFVILDEIDSILIDE-------- 216 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y~~dI~ygT-~~~l~fDyLrD~~~~---~~~~~~~r~~~~~IvDEaDs~LiDe-------- 216 (816)
.+.+.+..|....-+-...| ..++.. .+.+.|+-|..-... ....+..-+-.|++|||||++=-++
T Consensus 444 ~mn~i~y~g~~~sr~~i~~y--e~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQY--EFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLN 521 (1373)
T ss_pred hhceeeeecchhHHHHHHHH--HheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHH
Confidence 99999988887543322223 223333 334444433221110 1122333466899999999863222
Q ss_pred ---cCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHH
Q psy2371 217 ---ARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK 293 (816)
Q Consensus 217 ---a~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~ 293 (816)
...-|.|.|.+..++ -. .++.+++-|.+. +.. ...+|..+ .-.-++.++.++.+.|..
T Consensus 522 ~f~~~~rllitgTPlQNs--ik-EL~sLl~Fl~P~-kf~-----------~~~~f~~~----~~~~~e~~~~~L~~~L~P 582 (1373)
T KOG0384|consen 522 QFKMNHRLLITGTPLQNS--LK-ELWSLLHFLMPG-KFD-----------SWDEFLEE----FDEETEEQVRKLQQILKP 582 (1373)
T ss_pred HhcccceeeecCCCcccc--HH-HHHHHhcccCCC-CCC-----------cHHHHHHh----hcchhHHHHHHHHHHhhH
Confidence 134566777543221 11 333344433220 000 00111111 013355566655554421
Q ss_pred HHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccch---hh-hHH-----h
Q psy2371 294 MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASIT---FQ-NYF-----R 364 (816)
Q Consensus 294 ~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It---~q-~~f-----~ 364 (816)
--|+- +++|+.-- ++ +...++-.+. .| .|| +
T Consensus 583 ~~lRr---~kkdveks-----------------------------------lp--~k~E~IlrVels~lQk~yYk~ILtk 622 (1373)
T KOG0384|consen 583 FLLRR---LKKDVEKS-----------------------------------LP--PKEETILRVELSDLQKQYYKAILTK 622 (1373)
T ss_pred HHHHH---HHhhhccC-----------------------------------CC--CCcceEEEeehhHHHHHHHHHHHHh
Confidence 11111 12222111 11 1111111111 12 233 2
Q ss_pred hhcch-hcccccccc---hHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHH----------HHHhhccC
Q psy2371 365 MYKKI-SGMTGTAET---EAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILM----------DIKNCYIK 430 (816)
Q Consensus 365 ~Y~~l-~GmTGTa~t---e~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~----------~i~~~~~~ 430 (816)
-|..| -|..|+..+ -.-||++--|-.+.+=|.-.. ...+..+ ....+.+++++. ++-+..+.
T Consensus 623 N~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~-~~~~~~~---~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~ 698 (1373)
T KOG0384|consen 623 NFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK-ILGDFRD---KMRDEALQALIQSSGKLVLLDKLLPRLKEG 698 (1373)
T ss_pred hHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHH-HHHhhhh---cchHHHHHHHHHhcCcEEeHHHHHHHHhcC
Confidence 34333 244454433 344777765554433332110 0111111 012344444443 22233457
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc--hHHHHHHHHHcCCCc----cEEEecCccccCccccCCCCchhh
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ--HKLEAQIIAQAGHPK----MITIATNMAGRGTDIILGGNIDSY 504 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~--~~rEa~ii~~Ag~~g----~VtIATnmAGRGtDI~l~g~~~~~ 504 (816)
|..||||..-+..-+.|+++|..+|+|++=|.|.- .-|-++|-.+.- ++ -.++||.-.|=|+....
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFna-p~SddFvFLLSTRAGGLGINLat------- 770 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNA-PDSDDFVFLLSTRAGGLGINLAT------- 770 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccC-CCCCceEEEEecccCcccccccc-------
Confidence 88999999999999999999999999999999983 445566655532 33 36999999998887742
Q ss_pred HHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEE--ec---cc
Q psy2371 505 IKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFY--LS---LD 579 (816)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~--ls---le 579 (816)
.. .||-+|--=++--|.|.--||-|=|+.-..-.| || .|
T Consensus 771 -------------------------------AD-----TVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 771 -------------------------------AD-----TVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred -------------------------------cc-----eEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 11 799999888999999999999999998876443 33 45
Q ss_pred hhhhh
Q psy2371 580 DSLLK 584 (816)
Q Consensus 580 D~l~~ 584 (816)
.+++.
T Consensus 815 eEilE 819 (1373)
T KOG0384|consen 815 EEILE 819 (1373)
T ss_pred HHHHH
Confidence 55553
No 150
>KOG1000|consensus
Probab=97.58 E-value=0.0028 Score=72.22 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHh----hccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCc-cE---EEe
Q psy2371 414 EEKYQAILMDIKN----CYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK-MI---TIA 485 (816)
Q Consensus 414 ~~K~~ai~~~i~~----~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g-~V---tIA 485 (816)
..|..++++.|.. .-+.++.+|||+.-...-+.+...+.++++++.-++|....++++..-+.++.. .| +++
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvls 550 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLS 550 (689)
T ss_pred ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEE
Confidence 4577788888877 445778999999999999999999999999999999996655665555666644 23 333
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCC
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGR 565 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGR 565 (816)
---||=|+|+.- +-.|+-.|+|-++-.-.|.--|+-|
T Consensus 551 ItA~gvGLt~tA-------------------------------------------a~~VVFaEL~wnPgvLlQAEDRaHR 587 (689)
T KOG1000|consen 551 ITAAGVGLTLTA-------------------------------------------ASVVVFAELHWNPGVLLQAEDRAHR 587 (689)
T ss_pred Eeecccceeeec-------------------------------------------cceEEEEEecCCCceEEechhhhhh
Confidence 456888998842 2278899999999999999999999
Q ss_pred CCCCceE
Q psy2371 566 QGDPGSS 572 (816)
Q Consensus 566 qGdpG~s 572 (816)
-|+.-+.
T Consensus 588 iGQkssV 594 (689)
T KOG1000|consen 588 IGQKSSV 594 (689)
T ss_pred cccccee
Confidence 9998765
No 151
>KOG4150|consensus
Probab=97.39 E-value=0.00076 Score=77.51 Aligned_cols=119 Identities=18% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh----CCCC----eEEEcCCchHHH-HHHHH--HcCCCccEEE
Q psy2371 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK----NNLP----HSVLNAKQHKLE-AQIIA--QAGHPKMITI 484 (816)
Q Consensus 416 K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~----~gi~----~~vLnak~~~rE-a~ii~--~Ag~~g~VtI 484 (816)
|...+...+.++...|-.++-||.+..-+|.+-..-+. -|-. +....|...... +.|-. +-| +-.=+|
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G-~L~giI 588 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG-KLCGII 588 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC-eeeEEE
Confidence 44444444555566787899999999999987654332 1210 112233332222 22222 333 224579
Q ss_pred ecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccC
Q psy2371 485 ATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSG 564 (816)
Q Consensus 485 ATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtG 564 (816)
|||-.--|+|| |. . -.||....|-|..-..|-.||+|
T Consensus 589 aTNALELGIDI---G~-----------------------------------L-----DAVl~~GFP~S~aNl~QQ~GRAG 625 (1034)
T KOG4150|consen 589 ATNALELGIDI---GH-----------------------------------L-----DAVLHLGFPGSIANLWQQAGRAG 625 (1034)
T ss_pred ecchhhhcccc---cc-----------------------------------c-----eeEEEccCchhHHHHHHHhcccc
Confidence 99999999999 22 1 17999999999999999999999
Q ss_pred CCCCCceEEEEecc
Q psy2371 565 RQGDPGSSRFYLSL 578 (816)
Q Consensus 565 RqGdpG~s~~~lsl 578 (816)
|-.++.-+..+.+.
T Consensus 626 RRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 626 RRNKPSLAVYVAFL 639 (1034)
T ss_pred ccCCCceEEEEEec
Confidence 99999988766643
No 152
>KOG0392|consensus
Probab=97.37 E-value=0.0055 Score=75.98 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhcc--------------CCCcEEEEEcccHhHHHHHHHHHhCCCC---eEEEcCCchHHHHHHHHHcC
Q psy2371 415 EKYQAILMDIKNCYI--------------KEQPVLVGTTSIENSELLSNILKKNNLP---HSVLNAKQHKLEAQIIAQAG 477 (816)
Q Consensus 415 ~K~~ai~~~i~~~~~--------------~grpVLVft~si~~se~Ls~~L~~~gi~---~~vLnak~~~rEa~ii~~Ag 477 (816)
-|..|+-+.+.+|-- .|..|||||.=+...+.+.+-|.+.-.| +-.|+|.-....+.-+..++
T Consensus 1310 pKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~F 1389 (1549)
T KOG0392|consen 1310 PKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERF 1389 (1549)
T ss_pred hhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHh
Confidence 477777777776621 2345899999999999999888765443 44789985444444344455
Q ss_pred CCc---c-EEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCc
Q psy2371 478 HPK---M-ITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESR 553 (816)
Q Consensus 478 ~~g---~-VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~ 553 (816)
..+ . .+++|-+.|=|+... |--.||-+|.-=++
T Consensus 1390 N~DptIDvLlLTThVGGLGLNLT-------------------------------------------GADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1390 NEDPTIDVLLLTTHVGGLGLNLT-------------------------------------------GADTVVFVEHDWNP 1426 (1549)
T ss_pred cCCCceeEEEEeeeccccccccC-------------------------------------------CCceEEEEecCCCc
Confidence 544 2 468899999999773 22389999988899
Q ss_pred chhhhhcCccCCCCCCceEEE
Q psy2371 554 RIDNQLRGRSGRQGDPGSSRF 574 (816)
Q Consensus 554 rid~Q~~GRtGRqGdpG~s~~ 574 (816)
=-|.|..-||-|=|++-..-.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNV 1447 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNV 1447 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeee
Confidence 999999999999999876544
No 153
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.31 E-value=0.011 Score=73.07 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=92.5
Q ss_pred HHHHHHHHHH-HhhccCCC--cEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHHHHHHHH-cCC-CccEEEecC
Q psy2371 415 EKYQAILMDI-KNCYIKEQ--PVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIAQ-AGH-PKMITIATN 487 (816)
Q Consensus 415 ~K~~ai~~~i-~~~~~~gr--pVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~-Ag~-~g~VtIATn 487 (816)
.|...+.+.+ ......|. +||||+......+.+...|+..++++.-++|... .|...|-.+ ++. ..-.+++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777777766 56667888 8999999999999999999999999999999743 333333333 331 224677777
Q ss_pred ccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC
Q psy2371 488 MAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG 567 (816)
Q Consensus 488 mAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG 567 (816)
-+|-|+.-. ++.|||.+|..-++-.+.|...|+-|.|
T Consensus 772 agg~glnLt-------------------------------------------~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 772 AGGLGLNLT-------------------------------------------GADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred ccccceeec-------------------------------------------ccceEEEeccccChHHHHHHHHHHHHhc
Confidence 888887774 3449999999999999999999999999
Q ss_pred CCceEEEE
Q psy2371 568 DPGSSRFY 575 (816)
Q Consensus 568 dpG~s~~~ 575 (816)
.......|
T Consensus 809 Q~~~v~v~ 816 (866)
T COG0553 809 QKRPVKVY 816 (866)
T ss_pred CcceeEEE
Confidence 99876543
No 154
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.26 E-value=0.00074 Score=66.35 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc-C
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY-E 169 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y-~ 169 (816)
+|. +.-+.+|+|||--.+--.+..++ .+..|+|+.|||-+|. +|.+..+.+++++. ..-... ..+ +
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~----em~~aL~~~~~~~~--t~~~~~----~~~g~ 72 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAE----EMYEALKGLPVRFH--TNARMR----THFGS 72 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHH----HHHHHTTTSSEEEE--STTSS--------SS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHH----HHHHHHhcCCcccC--ceeeec----cccCC
Confidence 455 78899999999754433333455 4678999999999988 44444444444433 322111 123 3
Q ss_pred CCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
.-|++.|-+-| ..|+.+ + ....+.+++|+||+|.
T Consensus 73 ~~i~vMc~at~-~~~~~~-----p--~~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 73 SIIDVMCHATY-GHFLLN-----P--CRLKNYDVIIMDECHF 106 (148)
T ss_dssp SSEEEEEHHHH-HHHHHT-----S--SCTTS-SEEEECTTT-
T ss_pred CcccccccHHH-HHHhcC-----c--ccccCccEEEEecccc
Confidence 45666666655 233332 1 1236899999999997
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.20 E-value=0.02 Score=65.87 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=86.2
Q ss_pred CcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhh
Q psy2371 432 QPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIK 509 (816)
Q Consensus 432 rpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~ 509 (816)
.-+|||++|==.=-.|-..|++.++.+..++--....+..-....+. ...|++-|--+ -=+
T Consensus 301 ~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~---HFf-------------- 363 (442)
T PF06862_consen 301 SGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERF---HFF-------------- 363 (442)
T ss_pred CcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHH---hhh--------------
Confidence 34999999998888999999999999999988655555333333333 34688877321 100
Q ss_pred hcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC------CceEEEEeccch--h
Q psy2371 510 KNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD------PGSSRFYLSLDD--S 581 (816)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd------pG~s~~~lsleD--~ 581 (816)
+ +..++ |--|||-|.+|+.+..|-.+..--+.... .+++..+.|--| .
T Consensus 364 ----------------r------Ry~ir--Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 364 ----------------R------RYRIR--GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred ----------------h------hceec--CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 0 01111 44499999999999999888865555443 567777777777 4
Q ss_pred hhhhcChHHHHHHHHH
Q psy2371 582 LLKFFSSDQIKIVMEK 597 (816)
Q Consensus 582 l~~~~~~~~~~~~~~~ 597 (816)
|-++.|.++..+++..
T Consensus 420 LErIVGt~ra~~ml~~ 435 (442)
T PF06862_consen 420 LERIVGTERASKMLQS 435 (442)
T ss_pred HHHHhCHHHHHHHhcC
Confidence 5567888888777653
No 156
>KOG0390|consensus
Probab=97.03 E-value=0.098 Score=63.83 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEEE----cccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH-HHH-HcCC--CccE-E
Q psy2371 413 MEEKYQAILMDIKNCYIKEQPVLVGT----TSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ-IIA-QAGH--PKMI-T 483 (816)
Q Consensus 413 ~~~K~~ai~~~i~~~~~~grpVLVft----~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~-ii~-~Ag~--~g~V-t 483 (816)
...|+..++..+... +..+++|+ +-...-+.+..+.+.+|..+-.|+|+....+++ +|. +--- +..| +
T Consensus 576 ks~kl~~L~~ll~~~---~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfL 652 (776)
T KOG0390|consen 576 KSGKLLVLVFLLEVI---REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFL 652 (776)
T ss_pred hhhHHHHHHHHHHHH---hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEE
Confidence 345666666554222 23445555 555667777777788899999999996544443 332 3211 2245 5
Q ss_pred EecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCcc
Q psy2371 484 IATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRS 563 (816)
Q Consensus 484 IATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRt 563 (816)
.+|--.|=|+-.. |...||.+|.+=++..|.|..+|+
T Consensus 653 lSsKAgg~GinLi-------------------------------------------GAsRlil~D~dWNPa~d~QAmaR~ 689 (776)
T KOG0390|consen 653 LSSKAGGEGLNLI-------------------------------------------GASRLILFDPDWNPAVDQQAMARA 689 (776)
T ss_pred EecccccCceeec-------------------------------------------ccceEEEeCCCCCchhHHHHHHHh
Confidence 5666666776552 666999999999999999999999
Q ss_pred CCCCCCceEEE
Q psy2371 564 GRQGDPGSSRF 574 (816)
Q Consensus 564 GRqGdpG~s~~ 574 (816)
=|=|+.=-...
T Consensus 690 ~RdGQKk~v~i 700 (776)
T KOG0390|consen 690 WRDGQKKPVYI 700 (776)
T ss_pred ccCCCcceEEE
Confidence 99998876543
No 157
>KOG0953|consensus
Probab=96.98 E-value=0.022 Score=66.05 Aligned_cols=94 Identities=23% Similarity=0.208 Sum_probs=62.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcC----CCE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYE----ADI 172 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~----~dI 172 (816)
...++|.+|||--|+ .+-.+-+...-.-|=+-||.-+++. ...+|+.|-+++|. ||+-.+. +..
T Consensus 195 ~H~GPTNSGKTy~AL----qrl~~aksGvycGPLrLLA~EV~~r----~na~gipCdL~TGe----E~~~~~~~~~~a~h 262 (700)
T KOG0953|consen 195 MHVGPTNSGKTYRAL----QRLKSAKSGVYCGPLRLLAHEVYDR----LNALGIPCDLLTGE----ERRFVLDNGNPAQH 262 (700)
T ss_pred EEeCCCCCchhHHHH----HHHhhhccceecchHHHHHHHHHHH----hhhcCCCccccccc----eeeecCCCCCcccc
Confidence 467899999995433 2222334556678999999966654 34679999988875 4444443 455
Q ss_pred EEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 173 TYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 173 ~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
+-||-- |+ -+...++++||||+--|- |..|
T Consensus 263 vScTVE----------M~-----sv~~~yeVAViDEIQmm~-Dp~R 292 (700)
T KOG0953|consen 263 VSCTVE----------MV-----SVNTPYEVAVIDEIQMMR-DPSR 292 (700)
T ss_pred eEEEEE----------Ee-----ecCCceEEEEehhHHhhc-Cccc
Confidence 555541 21 134579999999998765 7765
No 158
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.79 E-value=0.0019 Score=69.12 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=60.8
Q ss_pred CceeeecCCCCchHHHHHHHHHHHhcCC-----cEEEEeCcHHHHHHHHHHHHHHhhhc---CCeEEEecCCCCHHH--H
Q psy2371 95 GNISEMQTGEGKTLVATLAAYLNSLSGQ-----GVHIVTISDYLAKRDAEWMSVLYNWL---GLSIGVNSSEISHSL--K 164 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~Lpa~l~aL~g~-----~V~VvT~n~yLA~Rd~e~~~~l~~~l---glsv~~i~~~~~~~~--r 164 (816)
|-|.--.+|.|||++++..+....-.+. .++||+|+.-+. .|...+.++. .+++.+..+...... .
T Consensus 27 g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~----~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 27 GGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS----QWKEEIEKWFDPDSLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH----HHHHHHHHHSGT-TS-EEEESSSCHHHHTTS
T ss_pred CEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh----hhhhhhccccccccccccccccccccccccc
Confidence 3366668999999887766642221221 499999995553 3777777766 577776666541111 1
Q ss_pred HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 165 KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 165 ~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...-..+|++.|...+. ..-.+. ..+.+...+++++||||+|.+
T Consensus 103 ~~~~~~~vvi~ty~~~~-~~~~~~---~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 103 NQLPKYDVVITTYETLR-KARKKK---DKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp SSCCCSSEEEEEHHHHH---TSTH---TTHHHHTSEEEEEEETTGGGG
T ss_pred cccccceeeeccccccc-cccccc---cccccccccceeEEEeccccc
Confidence 11124689998876652 000000 011222245899999999997
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.60 E-value=0.081 Score=64.52 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=52.3
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCcccc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDII 496 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~ 496 (816)
..|..|-||+.|+..++.+++.....+..+-++|++.... ++ ......+|+|=|-.-.=|+++.
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~--dv--~~W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE--DV--ESWKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc--cc--ccccceeEEEEeceEEEEeccc
Confidence 4678899999999999999999999888899999974433 22 2355678999999999999983
No 160
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.45 E-value=0.0071 Score=61.81 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=40.3
Q ss_pred chhhhhhhccccC-C--ceeeecCCCCchHH-HHHHHHH-------HHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 82 FDVQLIGGIALHY-G--NISEMQTGEGKTLV-ATLAAYL-------NSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 82 ~~VQ~~~~~~L~~-G--~Iaem~TGEGKTL~-~~Lpa~l-------~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.+-|..|+..++. + .+++++.|+|||-+ ..+.+.+ ....+..++|+++|..-.....+.+..
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4568888865443 3 48999999999943 3333332 135677899999998877776666555
No 161
>KOG0951|consensus
Probab=96.33 E-value=0.0055 Score=76.16 Aligned_cols=140 Identities=22% Similarity=0.225 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHH
Q psy2371 60 SILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKR 136 (816)
Q Consensus 60 ~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~R 136 (816)
|+.|.-...++...+..+=..-.|||-+....+.+-+ ++-++||+|||.++=++++- --+--.++-++|+.+.|..
T Consensus 1123 d~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~ 1201 (1674)
T KOG0951|consen 1123 DLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADE 1201 (1674)
T ss_pred hccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHH
Confidence 4445444445555555443344678888877776544 89999999999998877662 1222248889999999976
Q ss_pred HH-HHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 137 DA-EWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 137 d~-e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+ .|-+.|...+|+.+.-..|..+.. .+.....+|+++||.++ |.|+ + -..+++.|+||.|-+-
T Consensus 1202 ~~~~w~~~f~~~~G~~~~~l~ge~s~~-lkl~~~~~vii~tpe~~--d~lq-~---------iQ~v~l~i~d~lh~ig 1266 (1674)
T KOG0951|consen 1202 QYRDWEKKFSKLLGLRIVKLTGETSLD-LKLLQKGQVIISTPEQW--DLLQ-S---------IQQVDLFIVDELHLIG 1266 (1674)
T ss_pred HHHHHHHhhccccCceEEecCCccccc-hHHhhhcceEEechhHH--HHHh-h---------hhhcceEeeehhhhhc
Confidence 65 477888888999998888775543 33344679999999874 6653 2 1368999999999654
No 162
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.02 E-value=0.17 Score=62.16 Aligned_cols=106 Identities=22% Similarity=0.168 Sum_probs=71.0
Q ss_pred ccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhc--C---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 80 RHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLS--G---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~--g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
...|-|..++-.. .|. ++-+.-|+|||-+.+--+.. .+. | ..++++|.|+--|..-.+-+. +.+|-
T Consensus 4 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~l~~ria~-Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~---~~~~~--- 75 (726)
T TIGR01073 4 HLNPEQREAVKTT-EGPLLIMAGAGSGKTRVLTHRIAH-LIAEKNVAPWNILAITFTNKAAREMKERVE---KLLGP--- 75 (726)
T ss_pred ccCHHHHHHHhCC-CCCEEEEeCCCCCHHHHHHHHHHH-HHHcCCCCHHHeeeeeccHHHHHHHHHHHH---HHhcc---
Confidence 3577888877643 566 89999999999888776652 232 2 359999999887764443333 32321
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...++.++|...|+...|+..... . .-+.+|-|+|+.|+.
T Consensus 76 --------------~~~~~~i~TFHs~~~~iLr~~~~~----~-g~~~~f~i~d~~~~~ 115 (726)
T TIGR01073 76 --------------VAEDIWISTFHSMCVRILRRDIDR----I-GINRNFSIIDPTDQL 115 (726)
T ss_pred --------------ccCCcEEEcHHHHHHHHHHHHHHH----h-CCCCCCCcCCHHHHH
Confidence 013589999999999999875321 1 113456789998853
No 163
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.99 E-value=0.56 Score=54.24 Aligned_cols=112 Identities=16% Similarity=0.037 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhccccCCc----eeeecCCCCchHHHH-HHHHHHHhcCCcEEEEeCcHHHHHHHH
Q psy2371 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGN----ISEMQTGEGKTLVAT-LAAYLNSLSGQGVHIVTISDYLAKRDA 138 (816)
Q Consensus 64 ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~----Iaem~TGEGKTL~~~-Lpa~l~aL~g~~V~VvT~n~yLA~Rd~ 138 (816)
....++.+...+.+|-...+.. +..++ ..-+.+|+|||-+++ |+.+ ....|+.|.+|+.-.|=+ --.
T Consensus 73 ~v~~~v~~~L~~~l~~~~~~~~------~~~~~~~vi~lvG~~GvGKTTtaaKLA~~-l~~~G~kV~lV~~D~~R~-aA~ 144 (429)
T TIGR01425 73 MIQHAVFKELCNLVDPGVEAFT------PKKGKQNVIMFVGLQGSGKTTTCTKLAYY-YQRKGFKPCLVCADTFRA-GAF 144 (429)
T ss_pred HHHHHHHHHHHHHhCCCCcccc------ccCCCCeEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEcCcccch-hHH
Confidence 3455666666666653222211 11221 456789999986555 5544 346688899888754432 223
Q ss_pred HHHHHHhhhcCCeEEEecCCCCHHH-------HHhhcCCC-EEEECCCcchhh
Q psy2371 139 EWMSVLYNWLGLSIGVNSSEISHSL-------KKKSYEAD-ITYGTNNEFGFD 183 (816)
Q Consensus 139 e~~~~l~~~lglsv~~i~~~~~~~~-------r~~~y~~d-I~ygT~~~l~fD 183 (816)
+|++.+.+..|+.+.....+.++.. +....++| |++=|||++..|
T Consensus 145 eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d 197 (429)
T TIGR01425 145 DQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQE 197 (429)
T ss_pred HHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcch
Confidence 5667777788888766555544311 11112566 666799998764
No 164
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.93 E-value=0.25 Score=60.64 Aligned_cols=106 Identities=27% Similarity=0.218 Sum_probs=71.5
Q ss_pred ccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhc--C---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 80 RHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLS--G---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~--g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
...|-|..++-. ..|. ++-+..|+|||-|.+--+. +.+. | ..++++|.|+--|.--.+- +.+.+|-.
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~~v~p~~IL~lTFTnkAA~em~~R---l~~~~~~~-- 76 (715)
T TIGR01075 4 GLNDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVENASPHSIMAVTFTNKAAAEMRHR---IGALLGTS-- 76 (715)
T ss_pred ccCHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHcCCCCHHHeEeeeccHHHHHHHHHH---HHHHhccc--
Confidence 357778777653 3466 8899999999988766654 2232 3 3589999999988754443 33333311
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...+.++|...||+..|+.+.. ... -+-+|-|+|+.|..
T Consensus 77 ---------------~~~~~i~TfHs~~~~iLr~~~~----~~g-~~~~f~i~d~~d~~ 115 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHRLLRAHHL----DAG-LPQDFQILDSDDQL 115 (715)
T ss_pred ---------------ccCcEEEcHHHHHHHHHHHHHH----HhC-CCCCCeecCHHHHH
Confidence 1357899999999999997531 111 13457789998864
No 165
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.89 E-value=0.019 Score=64.34 Aligned_cols=49 Identities=24% Similarity=0.167 Sum_probs=38.2
Q ss_pred eeeecCCCCchHHHHHHHHHH--HhcCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 97 ISEMQTGEGKTLVATLAAYLN--SLSGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~--aL~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
++++..|+|||++++-.+... .-.+..+.++|+|..|..-..+.+..-+
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc
Confidence 688999999999888776644 4467789999999999886666555443
No 166
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.84 E-value=0.53 Score=57.95 Aligned_cols=106 Identities=24% Similarity=0.200 Sum_probs=71.5
Q ss_pred ccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHh--cC---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 80 RHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSL--SG---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL--~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
...|-|..++..- .|. ++-+..|+|||-+.+--+.. .+ .| ..+++||.|+-.|.--.+- +.+.+|-.
T Consensus 9 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~-Li~~~~v~p~~IL~lTFT~kAA~Em~~R---l~~~~~~~-- 81 (721)
T PRK11773 9 SLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAW-LMQVENASPYSIMAVTFTNKAAAEMRHR---IEQLLGTS-- 81 (721)
T ss_pred hcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHH-HHHcCCCChhHeEeeeccHHHHHHHHHH---HHHHhccC--
Confidence 3678888877543 466 88899999999887766552 23 23 4699999999998744443 33333311
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...+.++|...|++..|+.+... ..-+.+|-|+|+.|..
T Consensus 82 ---------------~~~~~i~TfHs~~~~iLr~~~~~-----~g~~~~f~i~d~~d~~ 120 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHRLLRAHWQD-----ANLPQDFQILDSDDQL 120 (721)
T ss_pred ---------------CCCCEEEcHHHHHHHHHHHHHHH-----hCCCCCCeecCHHHHH
Confidence 12578999999999999875321 1123457789988853
No 167
>KOG0386|consensus
Probab=95.70 E-value=0.22 Score=61.52 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH-HHHHcCCCc----cEEEecCc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ-IIAQAGHPK----MITIATNM 488 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~-ii~~Ag~~g----~VtIATnm 488 (816)
..|+.-+=+.+-+..+.|.-||.||.-..--..+-.+|.-.++..--|+|....+|+. ....=..++ -.+.+|.-
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 3455533333334445777899999999999999999999999999999975444432 222212233 36899999
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
.|.|+....- . .||-+|---++-+|.|+.-|+-|-|.
T Consensus 789 gglglNlQta--------------------------------------d-----tviifdsdwnp~~d~qaqdrahrigq 825 (1157)
T KOG0386|consen 789 GGLGLNLQTA--------------------------------------D-----TVIIFDSDWNPHQDLQAQDRAHRIGQ 825 (1157)
T ss_pred cccccchhhc--------------------------------------c-----eEEEecCCCCchhHHHHHHHHHHhhc
Confidence 9999988643 1 68999988999999999999999999
Q ss_pred CceEEEEe
Q psy2371 569 PGSSRFYL 576 (816)
Q Consensus 569 pG~s~~~l 576 (816)
.-.++.+-
T Consensus 826 ~~evRv~r 833 (1157)
T KOG0386|consen 826 KKEVRVLR 833 (1157)
T ss_pred hhheeeee
Confidence 99887764
No 168
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.69 E-value=0.25 Score=61.23 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=49.7
Q ss_pred HhhcC-CCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh------------hhccCCcceecccc--cc
Q psy2371 165 KKSYE-ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL------------IDEARTPLIISGEI--KN 229 (816)
Q Consensus 165 ~~~y~-~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L------------iDea~tpliisg~~--~~ 229 (816)
.+.|. ..|+.+||.=+..|+|...+ ....+.-+||||||++. -..+.+|+|.+=.. ..
T Consensus 2 ~~ly~~ggi~~~T~rIl~~DlL~~ri-------~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 2 EKVYLEGGIFSITSRILVVDLLTGII-------PPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hhHhhcCCEEEEechhhHhHHhcCCC-------CHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 44564 58999999999888876543 45678999999999863 24456788866332 22
Q ss_pred chhhhHHHHhhHhhhc
Q psy2371 230 NAQYFYKIINPIPKLL 245 (816)
Q Consensus 230 ~~~~y~~~i~~iv~~L 245 (816)
....|. .+.++.+.|
T Consensus 75 ~~~g~~-~l~~vmk~L 89 (814)
T TIGR00596 75 FTMGFS-PLETKMRNL 89 (814)
T ss_pred cccchH-HHHHHHHHh
Confidence 223455 666777665
No 169
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.64 E-value=0.054 Score=65.54 Aligned_cols=63 Identities=14% Similarity=-0.051 Sum_probs=45.3
Q ss_pred ccchhhhhhhccccCC--c-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 80 RHFDVQLIGGIALHYG--N-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G--~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
...+.|..++...+.. . ++++++|+|||-+.+-.+......|..|+|++||..=+....+.+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHH
Confidence 3467888888655543 3 8999999999976655554334468899999999876665555443
No 170
>KOG0349|consensus
Probab=95.49 E-value=0.0056 Score=68.73 Aligned_cols=53 Identities=25% Similarity=0.129 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHH
Q psy2371 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLN 117 (816)
Q Consensus 61 ~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~ 117 (816)
.+||.--.+-|..|. -|+|||..++|.++.|- +..+.||+|||-+|.||++.-
T Consensus 9 v~pel~~a~~e~dw~----lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqi 63 (725)
T KOG0349|consen 9 VLPELGMATDELDWT----LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 63 (725)
T ss_pred cchHhhhhhhhhccc----cccccccccccEEecCCcEEEEeccCCCCccceehhhHHH
Confidence 467765556666664 49999999999888765 888999999999999999863
No 171
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.33 E-value=0.76 Score=51.13 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
....+++...+.++-...+.+.. -..|. ..-+++|+|||-++.-.+...+..|+.|.+++.--+=+ ...+++.
T Consensus 88 ~~~~l~~~l~~~l~~~~~~~~~~----~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~-~a~eql~ 162 (318)
T PRK10416 88 LKELLKEELAEILEPVEKPLNIE----EKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA-AAIEQLQ 162 (318)
T ss_pred HHHHHHHHHHHHhCcCCcccccc----CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch-hhHHHHH
Confidence 34556666666654211122210 12344 45589999999776666555567788898887532210 0123344
Q ss_pred HHhhhcCCeEEEe
Q psy2371 143 VLYNWLGLSIGVN 155 (816)
Q Consensus 143 ~l~~~lglsv~~i 155 (816)
......|+.+...
T Consensus 163 ~~a~~~~i~~~~~ 175 (318)
T PRK10416 163 VWGERVGVPVIAQ 175 (318)
T ss_pred HHHHHcCceEEEe
Confidence 4455566665443
No 172
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.26 Score=56.23 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=51.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHh----cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHH-HhhcCCC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL----SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLK-KKSYEAD 171 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL----~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r-~~~y~~d 171 (816)
+.-++||.|||.+.+=.+....+ .|+.|+++|...|=+.- .+++..+.+.+|+.+.+.......... ...-++|
T Consensus 178 ~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa-~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~D 256 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA-KKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH-HHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCC
Confidence 67899999999877644443333 36789999999873332 345777777789887654432111110 1123556
Q ss_pred -EEEECCCcch
Q psy2371 172 -ITYGTNNEFG 181 (816)
Q Consensus 172 -I~ygT~~~l~ 181 (816)
|++=|+|+..
T Consensus 257 lVLIDTaGr~~ 267 (388)
T PRK12723 257 LVLVDTIGKSP 267 (388)
T ss_pred EEEEcCCCCCc
Confidence 4555888874
No 173
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.27 E-value=0.067 Score=67.59 Aligned_cols=108 Identities=20% Similarity=0.080 Sum_probs=69.8
Q ss_pred eeeecCCCCchHHHHHHHHHHH--hcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh--cCCCE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS--LSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS--YEADI 172 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a--L~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~--y~~dI 172 (816)
++.=-||||||++....|-+.. +.-..|.+||=-+.|-.|..+.+..+........ ......+-++.. -...|
T Consensus 277 ~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 277 YIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLEDGKGKI 353 (962)
T ss_pred EEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhcCCCcE
Confidence 7777899999998777665322 2335699999999999999999988877654433 111112222221 13479
Q ss_pred EEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 173 TYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 173 ~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
+++|---|+.. .+.. ......+.--++|+||||+=
T Consensus 354 i~TTIQKf~~~--~~~~---~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 354 IVTTIQKFNKA--VKED---ELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred EEEEecccchh--hhcc---cccccCCCcEEEEEechhhc
Confidence 99999887422 2211 11223456667899999984
No 174
>PF13245 AAA_19: Part of AAA domain
Probab=95.20 E-value=0.047 Score=47.92 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=32.7
Q ss_pred eeeecCCCCchHH-HHHHHHHHH-h--cCCcEEEEeCcHHHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLV-ATLAAYLNS-L--SGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 97 Iaem~TGEGKTL~-~~Lpa~l~a-L--~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
++++..|+|||-+ .-+.+.+.+ . .|+.|.|+|||+..|.+..+.+
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5699999999944 333333221 1 1788999999999999877766
No 175
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.17 E-value=0.031 Score=60.10 Aligned_cols=119 Identities=20% Similarity=0.118 Sum_probs=75.2
Q ss_pred chhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhcC----CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 82 FDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLSG----QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g----~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
++-|..++-. ..|. ++.+..|+|||.+.+--+......+ ..++|+|.|+..|....+.+.......+....
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~--- 77 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS--- 77 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT---
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc---
Confidence 4667777766 5666 8999999999998876665333333 46999999999888777777665443321000
Q ss_pred CCCC-HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 157 SEIS-HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 157 ~~~~-~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
.+ .-.........+.++|...|+...|+.+... ..-..++-|+|+.+.
T Consensus 78 --~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~-----~~~~~~~~i~~~~~~ 126 (315)
T PF00580_consen 78 --DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYE-----IGIDPNFEILDEEEQ 126 (315)
T ss_dssp --T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGG-----TTSHTTTEEECHHHH
T ss_pred --ccccccccccccchheeehhhhhhhhhhhhhhhh-----hhccccceeecchhc
Confidence 00 0011122346789999999998888876531 112456778888874
No 176
>KOG1803|consensus
Probab=95.13 E-value=0.04 Score=64.74 Aligned_cols=53 Identities=15% Similarity=-0.034 Sum_probs=42.3
Q ss_pred hhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHH
Q psy2371 83 DVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAK 135 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~ 135 (816)
+-|..|+....+.+ +.+++.|+|||-+.+.-+.+....|++|+|+.||..=..
T Consensus 188 ~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVd 243 (649)
T KOG1803|consen 188 SSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVD 243 (649)
T ss_pred HHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHH
Confidence 46666665555443 899999999999998888877778999999999987443
No 177
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.05 E-value=0.93 Score=49.31 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHH
Q psy2371 36 LSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLA 113 (816)
Q Consensus 36 lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lp 113 (816)
.+.+--++....+++++...+..+. ......++|+....++-- ..+.. +.-..++ ..-++||+|||-+++-.
T Consensus 19 v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~e~l~~~~~~~--~~~~~--~~~~~~~vi~l~G~~G~GKTTt~akL 92 (272)
T TIGR00064 19 VGYEVVEKIIEALKKELKGKKVKDA--ELLKEILKEYLKEILKET--DLELI--VEENKPNVILFVGVNGVGKTTTIAKL 92 (272)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCH--HHHHHHHHHHHHHHHccc--chhhc--ccCCCCeEEEEECCCCCcHHHHHHHH
Confidence 3444444455556666543333221 234566777777665421 00000 0011233 33489999999766655
Q ss_pred HHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH-------HHhhcCCC-EEEECCCcc
Q psy2371 114 AYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL-------KKKSYEAD-ITYGTNNEF 180 (816)
Q Consensus 114 a~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~-------r~~~y~~d-I~ygT~~~l 180 (816)
+...+-.|+.|.+++.--|=+ ...+++..+.+..|+.+.....+.++.. .....++| |++=|||+.
T Consensus 93 A~~l~~~g~~V~li~~D~~r~-~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 93 ANKLKKQGKSVLLAAGDTFRA-AAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHhcCCEEEEEeCCCCCH-HHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 554466788899988653311 1235566667777866543333333321 01122455 566677775
No 178
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.02 E-value=0.77 Score=53.14 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=53.0
Q ss_pred eeeecCCCCchHHHHHHHHH-HHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH-----HH--hhc
Q psy2371 97 ISEMQTGEGKTLVATLAAYL-NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL-----KK--KSY 168 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l-~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~-----r~--~~y 168 (816)
+.-+.+|+|||.+++=.|.. ..-.|+.|.+|+---|=+. -.+++..+....|+.+.....+.+|.+ .. ..-
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~ 181 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN 181 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc
Confidence 67799999999876655543 2246888888876543221 233455566778888765544444421 11 123
Q ss_pred CCC-EEEECCCcchhh
Q psy2371 169 EAD-ITYGTNNEFGFD 183 (816)
Q Consensus 169 ~~d-I~ygT~~~l~fD 183 (816)
++| |++=|||++..|
T Consensus 182 ~~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID 197 (428)
T ss_pred CCCEEEEeCCCccccC
Confidence 466 778899998643
No 179
>PRK10536 hypothetical protein; Provisional
Probab=94.94 E-value=0.062 Score=57.93 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=67.9
Q ss_pred HHHhccccch-hhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC-c-EEEEeCcHH-----------HHHHH
Q psy2371 74 KRVLKMRHFD-VQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ-G-VHIVTISDY-----------LAKRD 137 (816)
Q Consensus 74 ~R~lg~~p~~-VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~-~-V~VvT~n~y-----------LA~Rd 137 (816)
+...+++|.. .|....-.+.++. ++.+++|+|||..+...++...+.+. . +.|.-|+-. +..--
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 3445556654 4444444555555 78899999999887777664333543 2 333333311 55667
Q ss_pred HHHHHHHhhhcCCeEEEecCCCCHHHHHhh-cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 138 AEWMSVLYNWLGLSIGVNSSEISHSLKKKS-YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 138 ~e~~~~l~~~lglsv~~i~~~~~~~~r~~~-y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.-||.|+|..|.--++ . +.-++... ..--|.+. | +.|+|.+- + .-.|+|||||..+=
T Consensus 132 ~p~~~pi~D~L~~~~~----~-~~~~~~~~~~~~~Iei~-~----l~ymRGrt------l---~~~~vIvDEaqn~~ 189 (262)
T PRK10536 132 APYFRPVYDVLVRRLG----A-SFMQYCLRPEIGKVEIA-P----FAYMRGRT------F---ENAVVILDEAQNVT 189 (262)
T ss_pred HHHHHHHHHHHHHHhC----h-HHHHHHHHhccCcEEEe-c----HHHhcCCc------c---cCCEEEEechhcCC
Confidence 7789999988853222 1 11011100 11224443 3 45666531 1 34799999999864
No 180
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.91 E-value=0.39 Score=52.36 Aligned_cols=83 Identities=25% Similarity=0.296 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-C-CcEEEEeCcHHHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-G-QGVHIVTISDYLAKRDAEW 140 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g-~~V~VvT~n~yLA~Rd~e~ 140 (816)
+...+++...+.++..|.+... +..|+ ..-++||.|||-+.+-.+...+.. | +.|.+||.-.|=+. ..+.
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~-----~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~-a~eq 242 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEI-----LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIG-AVEQ 242 (282)
T ss_pred HHHHHHHHHHHHhccCCccccc-----cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchh-HHHH
Confidence 4556666666666544333221 22444 455899999997665555444555 5 78999987654221 1233
Q ss_pred HHHHhhhcCCeEE
Q psy2371 141 MSVLYNWLGLSIG 153 (816)
Q Consensus 141 ~~~l~~~lglsv~ 153 (816)
+..+.+.+|+.+.
T Consensus 243 l~~~~~~~~~p~~ 255 (282)
T TIGR03499 243 LKTYAKILGVPVK 255 (282)
T ss_pred HHHHHHHhCCcee
Confidence 3444455665553
No 181
>PRK10867 signal recognition particle protein; Provisional
Probab=94.86 E-value=1.1 Score=51.87 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
...++++...+.+|-...+...... ... +..+.+|+|||.+++-.|+..+.. |+.|.+|+.-.|=+. ..+++
T Consensus 74 ~~~~v~~el~~~l~~~~~~~~~~~~----~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-a~eQL 148 (433)
T PRK10867 74 VIKIVNDELVEILGGENSELNLAAK----PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-AIEQL 148 (433)
T ss_pred HHHHHHHHHHHHhCCCcceeeecCC----CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-HHHHH
Confidence 4566776666766643333322110 011 566899999997766555544555 888988887654332 12445
Q ss_pred HHHhhhcCCeEEEecCCCCHHH-H----H--hhcCCC-EEEECCCcch
Q psy2371 142 SVLYNWLGLSIGVNSSEISHSL-K----K--KSYEAD-ITYGTNNEFG 181 (816)
Q Consensus 142 ~~l~~~lglsv~~i~~~~~~~~-r----~--~~y~~d-I~ygT~~~l~ 181 (816)
..+.+..|+.+.....+.++.+ . . ...++| |++=|+|++.
T Consensus 149 ~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 149 KTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Confidence 5667778888765433333321 1 1 112455 5666888874
No 182
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.17 Score=57.51 Aligned_cols=82 Identities=20% Similarity=0.074 Sum_probs=52.8
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHH--HHHHHHHhhhcCCeEEEecCCCCHHH-----H
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRD--AEWMSVLYNWLGLSIGVNSSEISHSL-----K 164 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd--~e~~~~l~~~lglsv~~i~~~~~~~~-----r 164 (816)
.|+ ..-++||.|||-+++-.+......|+.|.+++.-.| |. .+++....+.+|+.+... .++.+ +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty---R~gAveQLk~yae~lgvpv~~~---~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF---RSGAVEQFQGYADKLDVELIVA---TSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc---CccHHHHHHHHhhcCCCCEEec---CCHHHHHHHHH
Confidence 455 466889999997655555444457888999998766 33 456777788888876543 23322 1
Q ss_pred Hhh--cCCC-EEEECCCcch
Q psy2371 165 KKS--YEAD-ITYGTNNEFG 181 (816)
Q Consensus 165 ~~~--y~~d-I~ygT~~~l~ 181 (816)
... .++| |++=|||+..
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHhcCCCCEEEEECCCCCc
Confidence 112 2455 6777999863
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.84 E-value=0.064 Score=55.26 Aligned_cols=59 Identities=22% Similarity=0.097 Sum_probs=37.7
Q ss_pred chhhhhhhccc-cCC-c--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHH
Q psy2371 82 FDVQLIGGIAL-HYG-N--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEW 140 (816)
Q Consensus 82 ~~VQ~~~~~~L-~~G-~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~ 140 (816)
++-|..++-.+ ..+ + +.++..|+|||-+.....-...-.|..|++++||.-.|.+-.+.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 45677777655 344 2 78999999999654332221223578899999999988875544
No 184
>KOG1802|consensus
Probab=94.71 E-value=0.13 Score=60.95 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=51.9
Q ss_pred chhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC-CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 82 FDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG-QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g-~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
...|..|.-..++.. |.|++.|+|||.+.+--+|..+-.+ -.|+|++|+.-=.-+.++.+. ..||+|.=++
T Consensus 412 N~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh----~tgLKVvRl~ 485 (935)
T KOG1802|consen 412 NASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH----KTGLKVVRLC 485 (935)
T ss_pred chHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH----hcCceEeeee
Confidence 456777776666655 9999999999999988888655444 459999999776666665443 3567776554
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.68 E-value=0.13 Score=54.54 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=83.3
Q ss_pred ccccchhhhhhhccccC-----CceeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHHHH-hhhcCC
Q psy2371 78 KMRHFDVQLIGGIALHY-----GNISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMSVL-YNWLGL 150 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~-----G~Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~~l-~~~lgl 150 (816)
++--.|+|..-+-.+.+ +.+.||..|+|||-| .+|++..+|. |.....+.+-..|..+-.+.+..- ...+|-
T Consensus 21 ~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCC
Confidence 34456677665554432 349999999999965 4577666664 555555555567999888877553 444565
Q ss_pred eEEEecC--C--CCHHH----H----HhhcCCCEEEECCCcch-hhhhh-hhhccCCC---------ccccccceEEEec
Q psy2371 151 SIGVNSS--E--ISHSL----K----KKSYEADITYGTNNEFG-FDYLR-DNMVFNSN---------DRVQRKLNFVILD 207 (816)
Q Consensus 151 sv~~i~~--~--~~~~~----r----~~~y~~dI~ygT~~~l~-fDyLr-D~~~~~~~---------~~~~r~~~~~IvD 207 (816)
.+-.+-= . .+.+. + ...-...|+++||..+- |.+.. +.+..... ...+....--|+|
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilD 179 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILD 179 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeE
Confidence 5554421 1 22211 1 01124579999998741 11110 11110100 0111234557999
Q ss_pred chhhhhhhccCCcceecc
Q psy2371 208 EIDSILIDEARTPLIISG 225 (816)
Q Consensus 208 EaDs~LiDea~tpliisg 225 (816)
|+|.+|. .++-||...
T Consensus 180 EsDe~L~--~k~qLiY~~ 195 (229)
T PF12340_consen 180 ESDEILS--VKYQLIYTM 195 (229)
T ss_pred CchhccC--cceEEEecC
Confidence 9999994 788888873
No 186
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.59 E-value=1.7 Score=50.61 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=37.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
+.-+.||+|||.+++-.+....-.|+.|.+++...+=+ .-.+++..+...+|+.+.
T Consensus 99 ~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~-aa~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 99 MLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP-AAYDQLKQLAEKIGVPFY 154 (437)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHHHHcCCcEE
Confidence 45579999999877655543445688899888765422 224456666777777653
No 187
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.55 E-value=0.53 Score=54.44 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHH-h-cCCcEEEEeCcHHHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNS-L-SGQGVHIVTISDYLAKRDAEW 140 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~a-L-~g~~V~VvT~n~yLA~Rd~e~ 140 (816)
+...++++..+.++..+.+. +..|+ +.-++||.|||.+.+-.+...+ + .|+.|.+|+.-.|=+.- .+.
T Consensus 198 ~~~~~~~~L~~~l~~~~~~~-------~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a-~eq 269 (424)
T PRK05703 198 AWRYLLELLANMIPVRVEDI-------LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGA-VEQ 269 (424)
T ss_pred HHHHHHHHHHHHhCcccccc-------ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHH-HHH
Confidence 44555666555554444332 23344 4558899999976665444344 3 46789999986653211 244
Q ss_pred HHHHhhhcCCeEEEecCCCCHHHHHh-hcCCC-EEEECCCcch
Q psy2371 141 MSVLYNWLGLSIGVNSSEISHSLKKK-SYEAD-ITYGTNNEFG 181 (816)
Q Consensus 141 ~~~l~~~lglsv~~i~~~~~~~~r~~-~y~~d-I~ygT~~~l~ 181 (816)
+..+.+.+|+.+.......+...... .-.+| |++=|||+..
T Consensus 270 L~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt~G~~~ 312 (424)
T PRK05703 270 LKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDTAGRSQ 312 (424)
T ss_pred HHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeCCCCCC
Confidence 55566677877654433222111111 11345 5555666643
No 188
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.48 E-value=0.025 Score=53.12 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=13.6
Q ss_pred eeeecCCCCchHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAY 115 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~ 115 (816)
++.+++|+|||.+.---+-
T Consensus 8 ~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 7789999999976554443
No 189
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.38 E-value=0.087 Score=64.57 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=47.0
Q ss_pred ccc-chhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHh-cC--CcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 79 MRH-FDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SG--QGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 79 ~~p-~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g--~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
+.| ||.|..-+- +|-.|. ++||+||+|||++.+.|++-... .+ ..+..+|.|.-=-.|..++++.+
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 444 788877543 334444 99999999999999999884333 23 45888888877666667777664
No 190
>KOG1805|consensus
Probab=94.37 E-value=0.079 Score=65.08 Aligned_cols=130 Identities=21% Similarity=0.148 Sum_probs=75.6
Q ss_pred ccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe-
Q psy2371 80 RHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN- 155 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i- 155 (816)
+....|..|+.-.+.-+ ++.+-.|+|||-+-...+=.....|+.|++.+.|.-=.--+ +-+ ...+|+...=+
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNI---LiK-L~~~~i~~lRLG 744 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNI---LIK-LKGFGIYILRLG 744 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHH---HHH-HhccCcceeecC
Confidence 45789999997554333 88888999999776655544567899999999886422111 111 11223332111
Q ss_pred --------------cCCCC---HHHHHhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 156 --------------SSEIS---HSLKKKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 156 --------------~~~~~---~~~r~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
+.+++ -++=++.| ...||.+|-=-+. +- -.+.|.|+|||||||=.|+.--.
T Consensus 745 ~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~-----~p------lf~~R~FD~cIiDEASQI~lP~~ 813 (1100)
T KOG1805|consen 745 SEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN-----HP------LFVNRQFDYCIIDEASQILLPLC 813 (1100)
T ss_pred CccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-----ch------hhhccccCEEEEccccccccchh
Confidence 11111 11112333 4578888763331 11 23457899999999999985433
Q ss_pred CCcceec
Q psy2371 218 RTPLIIS 224 (816)
Q Consensus 218 ~tpliis 224 (816)
--||.+|
T Consensus 814 LgPL~~s 820 (1100)
T KOG1805|consen 814 LGPLSFS 820 (1100)
T ss_pred hhhhhhc
Confidence 3454443
No 191
>KOG2340|consensus
Probab=94.36 E-value=0.97 Score=52.81 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHhhc-cCC-CcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC----chHHHHHHHHHcCCCccEEEec
Q psy2371 413 MEEKYQAILMDIKNCY-IKE-QPVLVGTTSIENSELLSNILKKNNLPHSVLNAK----QHKLEAQIIAQAGHPKMITIAT 486 (816)
Q Consensus 413 ~~~K~~ai~~~i~~~~-~~g-rpVLVft~si~~se~Ls~~L~~~gi~~~vLnak----~~~rEa~ii~~Ag~~g~VtIAT 486 (816)
.+.+++-.+..|.-.. +.+ .-+||..+|=-.=-.+-.++++.++....+|.- .-.|-+++.- -|+ ..|++-|
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~-qgr-~~vlLyT 609 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFF-QGR-KSVLLYT 609 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHH-hcC-ceEEEEe
Confidence 3455555555443211 111 237999999988889999999999988877764 1234444443 333 3688877
Q ss_pred Ccc--ccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhc---C
Q psy2371 487 NMA--GRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLR---G 561 (816)
Q Consensus 487 nmA--GRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~---G 561 (816)
-=| =|-.+| .+|+ .||-|.+|..+--|.-.+ |
T Consensus 610 ER~hffrR~~i--------------------------------------kGVk-----~vVfYqpP~~P~FYsEiinm~~ 646 (698)
T KOG2340|consen 610 ERAHFFRRYHI--------------------------------------KGVK-----NVVFYQPPNNPHFYSEIINMSD 646 (698)
T ss_pred hhhhhhhhhee--------------------------------------ccee-----eEEEecCCCCcHHHHHHHhhhh
Confidence 543 355666 3565 899999999999887654 5
Q ss_pred ccCCCCC----CceEEEEeccchh--hhhhcChHHHHHHHH
Q psy2371 562 RSGRQGD----PGSSRFYLSLDDS--LLKFFSSDQIKIVME 596 (816)
Q Consensus 562 RtGRqGd----pG~s~~~lsleD~--l~~~~~~~~~~~~~~ 596 (816)
||.=+|+ .-+++.+.|--|. |-.++|.++...+|.
T Consensus 647 k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGterAA~l~~ 687 (698)
T KOG2340|consen 647 KTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTERAAALMS 687 (698)
T ss_pred hhhccCCccccceEEEEEeechhhHHHHHhhhHHHHHHHhc
Confidence 6665663 2244555566663 334677777666543
No 192
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=94.12 E-value=0.13 Score=64.21 Aligned_cols=43 Identities=28% Similarity=0.258 Sum_probs=31.1
Q ss_pred eeeecCCCCchHHHHHHHHH-HHhcCC-cEEEEeCcHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYL-NSLSGQ-GVHIVTISDYLAKRDAE 139 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l-~aL~g~-~V~VvT~n~yLA~Rd~e 139 (816)
..+|.||+|||.+++-.++. +...|. .++|++|+...-.-...
T Consensus 63 ~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~ 107 (986)
T PRK15483 63 DIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRN 107 (986)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 79999999999998877653 333454 48899998765544443
No 193
>PRK14974 cell division protein FtsY; Provisional
Probab=93.56 E-value=3.2 Score=46.65 Aligned_cols=88 Identities=23% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhcccc-CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALH-YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~-~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
....++++..+.++-.+ +........-. .+. +..+.+|+|||-+..-.+....-.|..|.+++..-|=+. -.+++
T Consensus 110 ~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~-a~eqL 187 (336)
T PRK14974 110 VKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAG-AIEQL 187 (336)
T ss_pred HHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHH-HHHHH
Confidence 45667777777765433 11111111001 123 567899999997655555433345777888775533111 12355
Q ss_pred HHHhhhcCCeEEE
Q psy2371 142 SVLYNWLGLSIGV 154 (816)
Q Consensus 142 ~~l~~~lglsv~~ 154 (816)
......+|+.+..
T Consensus 188 ~~~a~~lgv~v~~ 200 (336)
T PRK14974 188 EEHAERLGVKVIK 200 (336)
T ss_pred HHHHHHcCCceec
Confidence 6667778887653
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.52 E-value=0.13 Score=53.61 Aligned_cols=68 Identities=24% Similarity=0.210 Sum_probs=38.0
Q ss_pred chhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC--cEEEEeCcHH-----------HHHHHHHHHHHHhh
Q psy2371 82 FDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ--GVHIVTISDY-----------LAKRDAEWMSVLYN 146 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~--~V~VvT~n~y-----------LA~Rd~e~~~~l~~ 146 (816)
++-|....-+|.+.. ++.++.|+|||+.++-.++.....|. .+.++-|+-. +-.--.-|+.|++.
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 345666665555444 89999999999998888886656664 4666666553 22333335666666
Q ss_pred hcC
Q psy2371 147 WLG 149 (816)
Q Consensus 147 ~lg 149 (816)
.|.
T Consensus 86 ~l~ 88 (205)
T PF02562_consen 86 ALE 88 (205)
T ss_dssp HHT
T ss_pred HHH
Confidence 553
No 195
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.39 E-value=0.43 Score=54.25 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=58.1
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhc-C-CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHh-h
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLS-G-QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKK-S 167 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g-~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~-~ 167 (816)
.+|. +.-++||.|||.++...+....+. | ..|.++|...|- .-..+++..+.+.+|+.+..+..+.+...... .
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR-IGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc-ccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 4455 678999999998877766644443 5 578888866553 23456777888899998887765544332222 1
Q ss_pred cCCC-EEEECCCcch
Q psy2371 168 YEAD-ITYGTNNEFG 181 (816)
Q Consensus 168 y~~d-I~ygT~~~l~ 181 (816)
-++| |++=|+|+..
T Consensus 214 ~~~DlVLIDTaG~~~ 228 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ 228 (374)
T ss_pred cCCCEEEEcCCCCCc
Confidence 2445 6666898764
No 196
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.10 E-value=2.6 Score=48.78 Aligned_cols=83 Identities=17% Similarity=0.061 Sum_probs=45.4
Q ss_pred eeeecCCCCchHHHHHHHHHH-HhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCC-EEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLN-SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEAD-ITY 174 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~-aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~d-I~y 174 (816)
+.-++||+|||-+++--+... .-.|+.|++++--.|=+ --.+++....+.+|+.+.....-....+....-++| |++
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~-aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLI 305 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI-AAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILI 305 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh-hHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEE
Confidence 466899999998776666533 34578898888644322 112344555577787654321100001111112445 666
Q ss_pred ECCCcc
Q psy2371 175 GTNNEF 180 (816)
Q Consensus 175 gT~~~l 180 (816)
=|||+.
T Consensus 306 DTaGr~ 311 (432)
T PRK12724 306 DTAGYS 311 (432)
T ss_pred eCCCCC
Confidence 677765
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.40 E-value=0.35 Score=58.16 Aligned_cols=66 Identities=23% Similarity=0.123 Sum_probs=45.2
Q ss_pred hhhhhhhccccCCc--eeeecCCCCchHHH-HHHHHHHHhc---C-CcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 83 DVQLIGGIALHYGN--ISEMQTGEGKTLVA-TLAAYLNSLS---G-QGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~-~Lpa~l~aL~---g-~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
+-|..++-..+.++ +..+..|+|||-+. .+..++.... | ..+.+++||--=|.|-.+.++.-...+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 67877776555555 89999999999643 2333333322 1 369999999999998887776544444
No 198
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.04 E-value=0.38 Score=58.07 Aligned_cols=69 Identities=23% Similarity=0.189 Sum_probs=49.4
Q ss_pred chhhhhhhccccCCc--eeeecCCCCchHHH-HHHHHHHHhc-C--CcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 82 FDVQLIGGIALHYGN--ISEMQTGEGKTLVA-TLAAYLNSLS-G--QGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~-~Lpa~l~aL~-g--~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.+-|..|+...+.++ ++.+..|+|||-+. .+...+..+. + ..|.+++||--=|.|-.+.++.....+++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 478999987666665 89999999999543 3333333333 2 35889999999999999887765555543
No 199
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=91.99 E-value=0.35 Score=59.06 Aligned_cols=109 Identities=23% Similarity=0.206 Sum_probs=72.3
Q ss_pred cccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHh-cC---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 79 MRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSL-SG---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL-~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
|...|-|..++-.- .|. ++-+..|+|||.+.+--+..... .| ..++++|.|+--|..-.+ .+...+|-..
T Consensus 1 ~~Ln~~Q~~av~~~-~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~---Rl~~~l~~~~- 75 (672)
T PRK10919 1 MRLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKE---RVAQTLGRKE- 75 (672)
T ss_pred CCCCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHH---HHHHHhCccc-
Confidence 45678888877543 566 88899999999887766653222 23 359999999999874333 3333343210
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...|.++|...|++..|+..... .. -+.++-|+|+.|..
T Consensus 76 ---------------~~~v~i~TfHS~~~~iLr~~~~~----~g-~~~~~~i~d~~~~~ 114 (672)
T PRK10919 76 ---------------ARGLMISTFHTLGLDIIKREYAA----LG-MKSNFSLFDDTDQL 114 (672)
T ss_pred ---------------ccCcEEEcHHHHHHHHHHHHHHH----hC-CCCCCeeCCHHHHH
Confidence 13588999999999999875321 11 12357789988763
No 200
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=91.92 E-value=0.4 Score=58.54 Aligned_cols=133 Identities=20% Similarity=0.117 Sum_probs=67.9
Q ss_pred chhhhhhhcc----ccCCc---eeeecCCCCchHHHHHHHHH-HHhcCC-cEEEEeCcHHHHHHH-------HHHH-HHH
Q psy2371 82 FDVQLIGGIA----LHYGN---ISEMQTGEGKTLVATLAAYL-NSLSGQ-GVHIVTISDYLAKRD-------AEWM-SVL 144 (816)
Q Consensus 82 ~~VQ~~~~~~----L~~G~---Iaem~TGEGKTL~~~Lpa~l-~aL~g~-~V~VvT~n~yLA~Rd-------~e~~-~~l 144 (816)
..+|...++. +.++. =++|.||+|||-||+=.++. |--.|. .-+||+||...-.=. .+.| +..
T Consensus 56 ~n~qs~n~I~~~~~~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~ 135 (985)
T COG3587 56 NNIQSKNGITQGSVRIDDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSE 135 (985)
T ss_pred HHHHhccCCCcccccCCCcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhh
Confidence 3455555443 34444 37999999999999887773 333454 478888886532221 1222 333
Q ss_pred hhhcCCeEEEecCCCCHHHHH-hhcCCCEEEECCCcchhhhhhhhhccCCC----cc---cccc-------ceEEEecch
Q psy2371 145 YNWLGLSIGVNSSEISHSLKK-KSYEADITYGTNNEFGFDYLRDNMVFNSN----DR---VQRK-------LNFVILDEI 209 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r~-~~y~~dI~ygT~~~l~fDyLrD~~~~~~~----~~---~~r~-------~~~~IvDEa 209 (816)
|+-..+... ++........- ..-.|.|+.-|...+--+=+.-||..+.. .. .-++ --++||||=
T Consensus 136 Yent~~e~~-i~~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEP 214 (985)
T COG3587 136 YENTRLESY-IYDEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEP 214 (985)
T ss_pred ccCcceeEE-eechHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecCh
Confidence 443333333 22211111111 11246777777766643311122322111 00 0111 238999999
Q ss_pred hhhhhh
Q psy2371 210 DSILID 215 (816)
Q Consensus 210 Ds~LiD 215 (816)
|.|.-|
T Consensus 215 h~f~~~ 220 (985)
T COG3587 215 HRFLGD 220 (985)
T ss_pred hhcccc
Confidence 999974
No 201
>KOG0952|consensus
Probab=91.90 E-value=0.23 Score=61.70 Aligned_cols=118 Identities=27% Similarity=0.376 Sum_probs=83.4
Q ss_pred CCceeeecCCCCchHHHHHHHHHHHhc---CCcEEEEeCcHHHHH-HHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcC
Q psy2371 94 YGNISEMQTGEGKTLVATLAAYLNSLS---GQGVHIVTISDYLAK-RDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYE 169 (816)
Q Consensus 94 ~G~Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~VvT~n~yLA~-Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~ 169 (816)
..-++-++||+|||++|-++++ .++. +..|.+++|-..|.+ |..+|=..++.. |+++.-..|+..++ -...-.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~-~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~~ 1020 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIF-RALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPD-VKAVRE 1020 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHH-HHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCC-hhheec
Confidence 3348889999999999999988 4554 557999999998875 444555556666 99999999887655 223346
Q ss_pred CCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
++|++.||-.. ++..|.. ......+.+...|+||.+-. -+.|-|.
T Consensus 1021 ~~~~ittpek~-dgi~Rsw----~~r~~v~~v~~iv~de~hll--g~~rgPV 1065 (1230)
T KOG0952|consen 1021 ADIVITTPEKW-DGISRSW----QTRKYVQSVSLIVLDEIHLL--GEDRGPV 1065 (1230)
T ss_pred CceEEcccccc-cCccccc----cchhhhccccceeecccccc--cCCCcce
Confidence 89999999885 3444422 11223357888999999954 4555553
No 202
>COG4889 Predicted helicase [General function prediction only]
Probab=90.61 E-value=0.35 Score=59.12 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=54.2
Q ss_pred cccchhhhhhhcccc-------CCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 79 MRHFDVQLIGGIALH-------YGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~-------~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
..|.|-|..|+-... .|++ -|.-|+|||.+++=-+ .+|....++.+.|+-.|-.|...+... -+.+.++
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkL-IMAcGTGKTfTsLkis--Eala~~~iL~LvPSIsLLsQTlrew~~-~~~l~~~ 235 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKL-IMACGTGKTFTSLKIS--EALAAARILFLVPSISLLSQTLREWTA-QKELDFR 235 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcE-EEecCCCccchHHHHH--HHHhhhheEeecchHHHHHHHHHHHhh-ccCccce
Confidence 367888888875542 3554 4888999998875433 467778999999999998876544321 2456777
Q ss_pred EEEecCCC
Q psy2371 152 IGVNSSEI 159 (816)
Q Consensus 152 v~~i~~~~ 159 (816)
...+|++.
T Consensus 236 a~aVcSD~ 243 (1518)
T COG4889 236 ASAVCSDD 243 (1518)
T ss_pred eEEEecCc
Confidence 77887753
No 203
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.60 E-value=0.73 Score=46.00 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=32.6
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+..+++|+|||..+.--++..+..|..|..++.. +-+.+..+.+..
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHH
Confidence 5678999999987776666566789999988764 445554444443
No 204
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=0.67 Score=52.58 Aligned_cols=90 Identities=28% Similarity=0.272 Sum_probs=46.9
Q ss_pred eeeecCCCCchHHHHHHH--HHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEE
Q psy2371 97 ISEMQTGEGKTLVATLAA--YLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITY 174 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa--~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~y 174 (816)
++-++||+|||++.-.-+ +.....+.. ++.+|-.--.--+..+..++..+| .....
T Consensus 46 ~iyG~~GTGKT~~~~~v~~~l~~~~~~~~--~~yINc~~~~t~~~i~~~i~~~~~---~~p~~----------------- 103 (366)
T COG1474 46 IIYGPTGTGKTATVKFVMEELEESSANVE--VVYINCLELRTPYQVLSKILNKLG---KVPLT----------------- 103 (366)
T ss_pred EEECCCCCCHhHHHHHHHHHHHhhhccCc--eEEEeeeeCCCHHHHHHHHHHHcC---CCCCC-----------------
Confidence 677999999998854333 322223332 222222211112234555666665 11111
Q ss_pred ECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh
Q psy2371 175 GTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI 214 (816)
Q Consensus 175 gT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li 214 (816)
|.+..=.+..|.+++. ...+.-++|+||+|.++-
T Consensus 104 g~~~~~~~~~l~~~~~------~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 104 GDSSLEILKRLYDNLS------KKGKTVIVILDEVDALVD 137 (366)
T ss_pred CCchHHHHHHHHHHHH------hcCCeEEEEEcchhhhcc
Confidence 2222222445566553 145677899999999883
No 205
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=89.72 E-value=0.67 Score=52.65 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=65.9
Q ss_pred ceeeecCCCCchHHHHHHHHHHHhcC-Cc--EEEEeCcHH-HHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCC
Q psy2371 96 NISEMQTGEGKTLVATLAAYLNSLSG-QG--VHIVTISDY-LAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEAD 171 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~Lpa~l~aL~g-~~--V~VvT~n~y-LA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~d 171 (816)
.++.+..|+|||-+.++-++..++.. .+ +.|+-++-- |..=....+......+|+.........+ ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~---------~~ 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS---------ME 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc---------cE
Confidence 37888999999999888888777763 44 444444444 7777777788777888886544333221 14
Q ss_pred EEEE-CCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 172 ITYG-TNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 172 I~yg-T~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
|++- |.+.+-|--+.|+.. .......+.++.+|||+.+
T Consensus 75 i~~~~~g~~i~f~g~~d~~~---~ik~~~~~~~~~idEa~~~ 113 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPN---KLKSGAGIAIIWFEEASQL 113 (396)
T ss_pred EEecCCCeEEEeecccCChh---HhhCcceeeeehhhhhhhc
Confidence 6663 345555544434321 1112234689999999986
No 206
>KOG1133|consensus
Probab=89.64 E-value=0.26 Score=58.95 Aligned_cols=42 Identities=33% Similarity=0.295 Sum_probs=32.8
Q ss_pred hccccchhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHh
Q psy2371 77 LKMRHFDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSL 119 (816)
Q Consensus 77 lg~~p~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL 119 (816)
..+.||+||+.=.- +|-+|+ |-|.+||+||||.....++ -+|
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal-tWL 59 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL-TWL 59 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH-HHH
Confidence 45789999976443 456898 8899999999998877776 455
No 207
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.50 E-value=4.4 Score=46.69 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=36.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
..-++||.|||-+++..+......|+.|.+++.-.+=+. -.+++....+.+|+.+..
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~lgipv~v 301 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEVIA 301 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhhcCCcEEe
Confidence 466889999998776666644556778888887555321 123344455556766553
No 208
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=89.43 E-value=0.53 Score=52.92 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=49.6
Q ss_pred HHHHhccccchhhhhhhccc-cCCc----eeeecCCCCchHHHHHHHHHHHhcCC---cEEEEeCcHH-----------H
Q psy2371 73 SKRVLKMRHFDVQLIGGIAL-HYGN----ISEMQTGEGKTLVATLAAYLNSLSGQ---GVHIVTISDY-----------L 133 (816)
Q Consensus 73 ~~R~lg~~p~~VQ~~~~~~L-~~G~----Iaem~TGEGKTL~~~Lpa~l~aL~g~---~V~VvT~n~y-----------L 133 (816)
-+.++|++|..++..+++-+ +.-. ..-++-|+|||+-|+.+++.+.+.-+ .++|--|+-- .
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 34678999999988887744 4333 45678899999988888887766432 3444333322 2
Q ss_pred HHHHHHHHHHHhhhc
Q psy2371 134 AKRDAEWMSVLYNWL 148 (816)
Q Consensus 134 A~Rd~e~~~~l~~~l 148 (816)
..----||+++|.-|
T Consensus 300 EeKm~PWmq~i~DnL 314 (436)
T COG1875 300 EEKMGPWMQAIFDNL 314 (436)
T ss_pred hhhccchHHHHHhHH
Confidence 233345777777655
No 209
>PRK04296 thymidine kinase; Provisional
Probab=89.26 E-value=0.38 Score=49.31 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=23.6
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
+.-+++|+|||..+.--+...+..|+.|.++.|
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 456778999997666555544456888988866
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.90 E-value=1.4 Score=45.62 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=50.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH--H-----HhhcC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL--K-----KKSYE 169 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~--r-----~~~y~ 169 (816)
+.-++||.|||-+.+=.|+...+.|+.|-++|.-.|=+- -.+++..+.+.+|+.+.......++.+ + ...-+
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g-a~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG-AVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKG 83 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH-HHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc-HHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcC
Confidence 346899999997655444444566999888886545322 245788889999999887665544321 1 11112
Q ss_pred CC-EEEECCCcch
Q psy2371 170 AD-ITYGTNNEFG 181 (816)
Q Consensus 170 ~d-I~ygT~~~l~ 181 (816)
+| |++=|||+-.
T Consensus 84 ~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 84 YDLVLIDTAGRSP 96 (196)
T ss_dssp SSEEEEEE-SSSS
T ss_pred CCEEEEecCCcch
Confidence 44 5556777753
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.77 E-value=0.34 Score=44.23 Aligned_cols=38 Identities=29% Similarity=0.245 Sum_probs=24.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLA 134 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA 134 (816)
+..+++|+|||..+..-+......+.+++.++++....
T Consensus 6 ~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred EEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 67889999999877655542212222577777765543
No 212
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.68 E-value=5.6 Score=45.77 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=76.3
Q ss_pred CcchhhHHHHHHHHHHHHH-------HhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEE
Q psy2371 57 TLDSILPKAFSVCREASKR-------VLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHI 126 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R-------~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~V 126 (816)
++.+++.+++..+.+...+ .+|+..-| ++.+| +..|. +.-+.||.|||..++--+...|+ .|.+|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~gi~tG~~~LD-~~~~G--~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~ 228 (421)
T TIGR03600 152 TFGEVLEDVVRDLDKRFNPKGELTGLSTGLPKLD-RLTNG--LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLF 228 (421)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCcceeCCChhHH-HHhcC--CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 4556666666665543221 11222222 12222 45676 78899999999766555543443 5888988
Q ss_pred Ee---CcHHHHHHHHHHHHHHhhhcCCeEEEec-CCCCHHHHH-------hhcCCCEEEECCCcchhhhhhhhhccCCCc
Q psy2371 127 VT---ISDYLAKRDAEWMSVLYNWLGLSIGVNS-SEISHSLKK-------KSYEADITYGTNNEFGFDYLRDNMVFNSND 195 (816)
Q Consensus 127 vT---~n~yLA~Rd~e~~~~l~~~lglsv~~i~-~~~~~~~r~-------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~ 195 (816)
++ +...|+.|... ...|++...+. +.++.++.. ...+..+.+..++.+..+.++..+..-.
T Consensus 229 fSlEm~~~~l~~Rl~~------~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~-- 300 (421)
T TIGR03600 229 FSLEMSAEQLGERLLA------SKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIK-- 300 (421)
T ss_pred EECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--
Confidence 87 45556555332 23344443332 233332211 1123456666666677777776542100
Q ss_pred cccccceEEEecchhhh
Q psy2371 196 RVQRKLNFVILDEIDSI 212 (816)
Q Consensus 196 ~~~r~~~~~IvDEaDs~ 212 (816)
....++.++|||=.+-|
T Consensus 301 ~~~~~~~lvvIDyLql~ 317 (421)
T TIGR03600 301 RKKGGLDLIVVDYIQLM 317 (421)
T ss_pred HhcCCCCEEEEeccccc
Confidence 01125789999955443
No 213
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.66 E-value=8.5 Score=44.40 Aligned_cols=144 Identities=19% Similarity=0.155 Sum_probs=70.6
Q ss_pred CcchhhHHHHHHHHHHHHHHhcc--ccchhh----hhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEE
Q psy2371 57 TLDSILPKAFSVCREASKRVLKM--RHFDVQ----LIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIV 127 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R~lg~--~p~~VQ----~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~Vv 127 (816)
++++++.+++..+.+.....-+. -|+... +.+| +..|. +.-+.||.|||..++=-++..+. .|..|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~gi~tG~~~LD~~~~G--~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~ 230 (434)
T TIGR00665 153 SIKEILKDTVEEIEELYERGGGITGVPTGFTDLDKLTSG--LQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFF 230 (434)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCCcccCCchhhHhhcCC--CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 35666677776665433321011 122211 1122 34666 78899999999655544443344 47788877
Q ss_pred eC---cHHHHHHHHHHHHHHhhhcCCeEEEec-CCCCHHHHH-------hhcCCCEE-EECCCcchhhhhhhhhccCCCc
Q psy2371 128 TI---SDYLAKRDAEWMSVLYNWLGLSIGVNS-SEISHSLKK-------KSYEADIT-YGTNNEFGFDYLRDNMVFNSND 195 (816)
Q Consensus 128 T~---n~yLA~Rd~e~~~~l~~~lglsv~~i~-~~~~~~~r~-------~~y~~dI~-ygT~~~l~fDyLrD~~~~~~~~ 195 (816)
+. ..+++.|.. ....|+....+. +.++.++.. ...+..+. +.+| .+..+.+++.+.. .
T Consensus 231 SlEm~~~~i~~R~~------~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~-~~~~~~i~~~i~~---~ 300 (434)
T TIGR00665 231 SLEMSAEQLAMRML------SSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTP-GLTITELRAKARR---L 300 (434)
T ss_pred eCcCCHHHHHHHHH------HHhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCC-CCCHHHHHHHHHH---H
Confidence 63 344444422 122344433222 234433211 01122333 3344 4556666665421 1
Q ss_pred cccccceEEEecchhhh
Q psy2371 196 RVQRKLNFVILDEIDSI 212 (816)
Q Consensus 196 ~~~r~~~~~IvDEaDs~ 212 (816)
....+++++|||=...|
T Consensus 301 ~~~~~~~~vvID~l~~i 317 (434)
T TIGR00665 301 KREHGLGLIVIDYLQLM 317 (434)
T ss_pred HHhcCCCEEEEcchHhc
Confidence 11236889999965543
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.54 E-value=1 Score=41.60 Aligned_cols=37 Identities=27% Similarity=0.175 Sum_probs=21.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYL 133 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yL 133 (816)
+.-+++|+|||..+-..+....-.+..+..+..+...
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 7889999999954443332211124455555554433
No 215
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=88.50 E-value=1.3 Score=53.98 Aligned_cols=106 Identities=24% Similarity=0.226 Sum_probs=69.8
Q ss_pred cchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhc--C---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 81 HFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLS--G---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~--g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
..|-|..++-. ..|. ++-+..|+|||-+.+--+.. .+. | ..+++||.|+--|....+. +.+.+|-.
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~-ll~~~~~~p~~IL~vTFt~~Aa~em~~R---l~~~l~~~--- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAY-LIQNCGYKARNIAAVTFTNKAAREMKER---VAKTLGKG--- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHH-HHHhcCCCHHHeEEEeccHHHHHHHHHH---HHHHhCcc---
Confidence 45667776543 3566 88999999999887766652 232 3 3589999999888754443 44444421
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
-...|.++|..+|++.+|+..... . .-...+-|+|+.+..
T Consensus 74 -------------~~~~v~v~TfHs~a~~il~~~~~~----~-g~~~~~~il~~~~~~ 113 (664)
T TIGR01074 74 -------------EARGLTISTFHTLGLDIIKREYNA----L-GYKSNFSLFDETDQL 113 (664)
T ss_pred -------------ccCCeEEEeHHHHHHHHHHHHHHH----h-CCCCCCEEeCHHHHH
Confidence 023689999999999999875211 0 112345688988854
No 216
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.46 E-value=5.6 Score=46.85 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=54.1
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHh-cC-CcEEEEeCcHH-HHHHHHHHHHHHhhhcCCeEEEecCCCCHHH-HHh
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSL-SG-QGVHIVTISDY-LAKRDAEWMSVLYNWLGLSIGVNSSEISHSL-KKK 166 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g-~~V~VvT~n~y-LA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~-r~~ 166 (816)
..|. ..-++||.|||-+....+....+ .| +.|.+++.-.| ++- .+.+.-+.+.+|+.+.......+... ...
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA--~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~ 331 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGG--HEQLRIYGKILGVPVHAVKDAADLRLALSE 331 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhH--HHHHHHHHHHhCCCeeccCCchhHHHHHHh
Confidence 3465 46689999999887777754443 45 46877775443 222 35566667788887765554433221 222
Q ss_pred hcCC-CEEEECCCcchhh
Q psy2371 167 SYEA-DITYGTNNEFGFD 183 (816)
Q Consensus 167 ~y~~-dI~ygT~~~l~fD 183 (816)
..+. .|++-|+|+...|
T Consensus 332 L~d~d~VLIDTaGr~~~d 349 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRD 349 (484)
T ss_pred ccCCCeEEeCCCCcChhh
Confidence 2233 5788899987544
No 217
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=88.12 E-value=1.8 Score=53.36 Aligned_cols=64 Identities=20% Similarity=0.083 Sum_probs=45.5
Q ss_pred HhccccchhhhhhhccccCCc--eeeecCCCCchHHHH-HHHHHHHhcC--CcEEEEeCcHHHHHHHHHH
Q psy2371 76 VLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVAT-LAAYLNSLSG--QGVHIVTISDYLAKRDAEW 140 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~-Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e~ 140 (816)
..|....+-|..++-.+..++ +..+..|+|||-+.. +...+.. .| ..|.+++||---|.|..+.
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~ 387 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEV 387 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHh
Confidence 356778888998887666655 899999999996432 2222222 24 6799999999888866543
No 218
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.91 E-value=2.6 Score=41.91 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=32.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
+..+++|+|||-++..-+...+-.|..|.++.-..+ -....+.+..+...+|+.+.
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~-~~~~~~~l~~~~~~~~~~~~ 59 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY-RPAAIEQLRVLGEQVGVPVF 59 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC-ChHHHHHHHHhcccCCeEEE
Confidence 456899999998766655544455777776663322 11223344444555565543
No 219
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.78 E-value=4.2 Score=50.28 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHH-hcC-CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH----HH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNS-LSG-QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL----KK 165 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~a-L~g-~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~----r~ 165 (816)
.|. ..-++||.|||-++...+.... ..| +.|.++|.-.|=+- -.+.+..+.+.+|+.+.++. ++++ -.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Rig-A~eQL~~~a~~~gvpv~~~~---~~~~l~~al~ 259 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIG-ALEQLRIYGRILGVPVHAVK---DAADLRFALA 259 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchH-HHHHHHHHHHhCCCCccccC---CHHHHHHHHH
Confidence 455 4679999999887777665443 455 57888887655311 24567777788898876544 2222 11
Q ss_pred hhcCCC-EEEECCCcch
Q psy2371 166 KSYEAD-ITYGTNNEFG 181 (816)
Q Consensus 166 ~~y~~d-I~ygT~~~l~ 181 (816)
..-++| |++=|+|+..
T Consensus 260 ~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 260 ALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred HhcCCCEEEEeCCCCCc
Confidence 122456 5677999874
No 220
>KOG0388|consensus
Probab=87.75 E-value=1.3 Score=53.34 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=93.6
Q ss_pred ecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc-hHHHHHHHH--HcCCCccEEEec
Q psy2371 410 YKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ-HKLEAQIIA--QAGHPKMITIAT 486 (816)
Q Consensus 410 ~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~-~~rEa~ii~--~Ag~~g~VtIAT 486 (816)
|.|...|+..+=+.+.+..+.|..||+|+.-....+.+-++|..+|+.+--|+|.- ...-+++|. ++...--.+++|
T Consensus 1023 FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred hhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 45666777666666666667888999999999999999999999999999999973 333345554 242222458899
Q ss_pred CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC
Q psy2371 487 NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 487 nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq 566 (816)
.-.|-|+... ... .||-||-.=++-+|.|...|+-|-
T Consensus 1103 RAGGLGINLT--------------------------------------AAD-----TViFYdSDWNPT~D~QAMDRAHRL 1139 (1185)
T KOG0388|consen 1103 RAGGLGINLT--------------------------------------AAD-----TVIFYDSDWNPTADQQAMDRAHRL 1139 (1185)
T ss_pred ccCccccccc--------------------------------------ccc-----eEEEecCCCCcchhhHHHHHHHhc
Confidence 9888887763 122 799999999999999999999999
Q ss_pred CCCceEEE
Q psy2371 567 GDPGSSRF 574 (816)
Q Consensus 567 GdpG~s~~ 574 (816)
|..--...
T Consensus 1140 GQTrdvtv 1147 (1185)
T KOG0388|consen 1140 GQTRDVTV 1147 (1185)
T ss_pred cCccceee
Confidence 98765433
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.60 E-value=1.7 Score=41.45 Aligned_cols=39 Identities=28% Similarity=0.240 Sum_probs=27.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAK 135 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~ 135 (816)
+..+++|+|||..+...+...+-.|..|.++.....+..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 456889999998776666655556777777776544433
No 222
>KOG0989|consensus
Probab=87.56 E-value=0.58 Score=51.51 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=22.5
Q ss_pred hhhhhhhhhccCCCccccccceEEEecchhhhhhh
Q psy2371 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILID 215 (816)
Q Consensus 181 ~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiD 215 (816)
.|.+++.... ........++.++|+||||+|-.|
T Consensus 111 ~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 111 NFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSD 144 (346)
T ss_pred CHHHHhhccc-cccCCCCCcceEEEEechhhhhHH
Confidence 3555555432 122345678899999999999844
No 223
>PRK11054 helD DNA helicase IV; Provisional
Probab=87.13 E-value=2.7 Score=51.60 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=62.1
Q ss_pred cccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHh----cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 79 MRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSL----SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL----~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
...++-|..++..-....++.+.-|+|||-+.+--+..... .+..++++|.|+-.|....+- +...+|.
T Consensus 195 ~~L~~~Q~~av~~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eR---L~~~lg~---- 267 (684)
T PRK11054 195 SPLNPSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDER---IRERLGT---- 267 (684)
T ss_pred CCCCHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHH---HHHhcCC----
Confidence 45678888877644333389999999999887655432222 234799999999999755543 4444441
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDN 188 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~ 188 (816)
.+|.++|...||+..|++.
T Consensus 268 ---------------~~v~v~TFHSlal~Il~~~ 286 (684)
T PRK11054 268 ---------------EDITARTFHALALHIIQQG 286 (684)
T ss_pred ---------------CCcEEEeHHHHHHHHHHHh
Confidence 2588999999999998875
No 224
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=86.63 E-value=2.2 Score=55.84 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=75.0
Q ss_pred cchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCC---cEEEEeCcHHHHHHHHHHHHHHh-hhcCCeEEEec
Q psy2371 81 HFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQ---GVHIVTISDYLAKRDAEWMSVLY-NWLGLSIGVNS 156 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~---~V~VvT~n~yLA~Rd~e~~~~l~-~~lglsv~~i~ 156 (816)
.++-|..++-.-...-++.+.-|||||.+.+--+....+.|. .++|||-|+--|.--.+-+..-. +.+.- .
T Consensus 2 ~t~~Q~~ai~~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-----~ 76 (1232)
T TIGR02785 2 WTDEQWQAIYTRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-----E 76 (1232)
T ss_pred CCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-----C
Confidence 367788888743223389999999999998877765555564 48999999987754333333222 11110 0
Q ss_pred CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 157 SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 157 ~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
+....-.++...-....++|-..|+...|+.+.. ...+ ...|=|.||.+.
T Consensus 77 p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~----~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 77 PNSKHLRRQLALLNTANISTLHSFCLKVIRKHYY----LLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred chhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhh----hcCC-CCCceeCCHHHH
Confidence 0100111222333466789999999999998742 1222 345667999886
No 225
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.42 E-value=1.4 Score=54.56 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=42.1
Q ss_pred ccccchhhhhhhccccCC-c--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHH
Q psy2371 78 KMRHFDVQLIGGIALHYG-N--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDA 138 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G-~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~ 138 (816)
+....+-|..++-.+..+ + +..+..|+|||-+.-.........|..|++++||---|.+-.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 345677888888666553 4 899999999995533322222235888999999987776544
No 226
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=85.88 E-value=3.4 Score=44.15 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=58.7
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCc---HHHHHHHHHHHHHHhhhcCCeEEEec--CCCCHHH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTIS---DYLAKRDAEWMSVLYNWLGLSIGVNS--SEISHSL 163 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n---~yLA~Rd~e~~~~l~~~lglsv~~i~--~~~~~~~ 163 (816)
+..|. +.-++||.|||..+.--++..+.. |..|.+++.- ..++.| +... ..|+.+.... ...+.++
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r----~~~~--~~~~~~~~~~~~~~~~~~~ 100 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR----LLGQ--YAGKRLHLPDTVFIYTLEE 100 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH----HHHH--HhCCCcccCCccccccHHH
Confidence 45666 788999999997655445534455 7778877752 234433 2222 2233332211 1122221
Q ss_pred HHh---hc--CC-CEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 164 KKK---SY--EA-DITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 164 r~~---~y--~~-dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
-.. .+ .. -++|-+++.+..+.+.+.+.. .....+++++|||....+.
T Consensus 101 ~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~---~~~~~~~~~vvID~l~~l~ 153 (271)
T cd01122 101 FDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRY---MAVSHGIQHIIIDNLSIMV 153 (271)
T ss_pred HHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHH---HHhcCCceEEEECCHHHHh
Confidence 111 11 11 234444555445555554421 1123478899999998876
No 227
>KOG0391|consensus
Probab=85.74 E-value=3.6 Score=52.21 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCc-c---EEEecCccc
Q psy2371 415 EKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK-M---ITIATNMAG 490 (816)
Q Consensus 415 ~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g-~---VtIATnmAG 490 (816)
.|++++.-.+.+....|..|||||.-...-+.|-..|..+|+...-|+|...-..+++..+.+... + .+++|.--
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg- 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG- 1338 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC-
Confidence 466777666777777899999999999999999999999999999999986544455555555433 3 36788754
Q ss_pred cCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCc
Q psy2371 491 RGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPG 570 (816)
Q Consensus 491 RGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG 570 (816)
|+-|.|.| --.||-||--=++-.|-|.--|+-|-|+.-
T Consensus 1339 -gvGiNLtg-----------------------------------------ADTVvFYDsDwNPtMDaQAQDrChRIGqtR 1376 (1958)
T KOG0391|consen 1339 -GVGINLTG-----------------------------------------ADTVVFYDSDWNPTMDAQAQDRCHRIGQTR 1376 (1958)
T ss_pred -cccccccc-----------------------------------------CceEEEecCCCCchhhhHHHHHHHhhcCcc
Confidence 55555543 238999998888988888777777766655
Q ss_pred eE
Q psy2371 571 SS 572 (816)
Q Consensus 571 ~s 572 (816)
-.
T Consensus 1377 DV 1378 (1958)
T KOG0391|consen 1377 DV 1378 (1958)
T ss_pred ce
Confidence 43
No 228
>KOG1002|consensus
Probab=85.62 E-value=1.9 Score=50.14 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhccCCC--cEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC--chHHHHHHHHHcCCCc-cEEEecCc
Q psy2371 414 EEKYQAILMDIKNCYIKEQ--PVLVGTTSIENSELLSNILKKNNLPHSVLNAK--QHKLEAQIIAQAGHPK-MITIATNM 488 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~gr--pVLVft~si~~se~Ls~~L~~~gi~~~vLnak--~~~rEa~ii~~Ag~~g-~VtIATnm 488 (816)
..|.+|+++++.-+.+..+ ..+||..-....+.+.=.|.+.|+.|.-|.|. ..+|.+.|-.+...+. +|.+-. +
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvS-L 697 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVS-L 697 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEE-e
Confidence 4588999999876655444 46898888888888999999999999999998 4678888887766544 454322 3
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
-+=|+-..|. +. .||...|.-=++.+..|.--|--|-|+
T Consensus 698 kAGGVALNLt------------------------------------eA-----SqVFmmDPWWNpaVe~Qa~DRiHRIGQ 736 (791)
T KOG1002|consen 698 KAGGVALNLT------------------------------------EA-----SQVFMMDPWWNPAVEWQAQDRIHRIGQ 736 (791)
T ss_pred ccCceEeeec------------------------------------hh-----ceeEeecccccHHHHhhhhhhHHhhcC
Confidence 3335555443 11 289999988889999888888888665
Q ss_pred Cc
Q psy2371 569 PG 570 (816)
Q Consensus 569 pG 570 (816)
--
T Consensus 737 ~r 738 (791)
T KOG1002|consen 737 YR 738 (791)
T ss_pred cc
Confidence 43
No 229
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.36 E-value=0.66 Score=54.87 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=58.7
Q ss_pred eeecCCCCchHHHHHHHHHHHhcCCc--EEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHh------hcC
Q psy2371 98 SEMQTGEGKTLVATLAAYLNSLSGQG--VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKK------SYE 169 (816)
Q Consensus 98 aem~TGEGKTL~~~Lpa~l~aL~g~~--V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~------~y~ 169 (816)
-+|.||+|||++.+-.++..--.|.+ ...|-.+.-|-+-.-.-.-++....=.+-.+.+++...+.|+- .-+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 47999999999866555544456655 3445555556554443333333222122223333332222221 113
Q ss_pred CCEEEECCCcchhhhhhhhhccCCCcccc---ccce-EEEecchhhhh
Q psy2371 170 ADITYGTNNEFGFDYLRDNMVFNSNDRVQ---RKLN-FVILDEIDSIL 213 (816)
Q Consensus 170 ~dI~ygT~~~l~fDyLrD~~~~~~~~~~~---r~~~-~~IvDEaDs~L 213 (816)
..|.++|--.|-.|+.+.. .+...+ .... +.|-||||.+=
T Consensus 82 iei~fttiq~l~~d~~~~k----en~itledl~~~klvfl~deahhln 125 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAK----ENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred eEEEEeehHHHHHHHHhhc----cccccHhhHhhCceEEEechhhhhh
Confidence 4688888887755555432 111111 2233 45789999874
No 230
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.90 E-value=9.4 Score=42.78 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=51.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH-------HHHhhcC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS-------LKKKSYE 169 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~-------~r~~~y~ 169 (816)
+.-+-.|.|||-+.+=.|+...-.|+.|.+..---.=|- -.+++.-+.+.+|+.|..-..|.+|. +..++.+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa-AiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~ 221 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA-AIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARG 221 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH-HHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcC
Confidence 677889999999877777655567888877665433222 23567777788898887533344432 2233334
Q ss_pred CCEEEE-CCCcc
Q psy2371 170 ADITYG-TNNEF 180 (816)
Q Consensus 170 ~dI~yg-T~~~l 180 (816)
.||+.+ |.||+
T Consensus 222 ~DvvliDTAGRL 233 (340)
T COG0552 222 IDVVLIDTAGRL 233 (340)
T ss_pred CCEEEEeCcccc
Confidence 454443 55554
No 231
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.64 E-value=8.1 Score=44.37 Aligned_cols=83 Identities=22% Similarity=0.162 Sum_probs=53.9
Q ss_pred eeeecCCCCchHHHHHHHHHHH-hcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc-CCC-E
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS-LSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY-EAD-I 172 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a-L~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y-~~d-I 172 (816)
..-++||-|||-+.+=.|...+ +.++ .|-+||.--|= .=-.+++....+-||+.+.++.+..+-++-...+ .|| |
T Consensus 207 ~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~I 285 (407)
T COG1419 207 ALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVI 285 (407)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEE
Confidence 4569999999987665554444 4443 58888876661 1124678888889999999888654433322222 565 5
Q ss_pred EEECCCcc
Q psy2371 173 TYGTNNEF 180 (816)
Q Consensus 173 ~ygT~~~l 180 (816)
.+-|.|+=
T Consensus 286 LVDTaGrs 293 (407)
T COG1419 286 LVDTAGRS 293 (407)
T ss_pred EEeCCCCC
Confidence 56688774
No 232
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=83.96 E-value=1.5 Score=47.35 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=48.3
Q ss_pred cEEEEeCcHHHHHHHHHHHHHHhhhcC--CeEEEecCC-CCHHHHH---hhcCCCEEEECCCcchhhhhhhhhccCCCcc
Q psy2371 123 GVHIVTISDYLAKRDAEWMSVLYNWLG--LSIGVNSSE-ISHSLKK---KSYEADITYGTNNEFGFDYLRDNMVFNSNDR 196 (816)
Q Consensus 123 ~V~VvT~n~yLA~Rd~e~~~~l~~~lg--lsv~~i~~~-~~~~~r~---~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~ 196 (816)
.++|||.+ |.|-++..+.+-.+-| .+|+-+..- +..++.. .....+|-+|||||+ .++| + .+.+
T Consensus 128 ~~lvvs~S---alRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl-~kLl-e-----~~~L 197 (252)
T PF14617_consen 128 HVLVVSSS---ALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRL-SKLL-E-----NGAL 197 (252)
T ss_pred EEEEEcch---HHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHH-HHHH-H-----cCCC
Confidence 47888887 6677777776666543 344433332 2333322 223679999999998 3444 2 3466
Q ss_pred ccccceEEEecc
Q psy2371 197 VQRKLNFVILDE 208 (816)
Q Consensus 197 ~~r~~~~~IvDE 208 (816)
.+..+.++|||=
T Consensus 198 ~l~~l~~ivlD~ 209 (252)
T PF14617_consen 198 SLSNLKRIVLDW 209 (252)
T ss_pred CcccCeEEEEcC
Confidence 778899999994
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.72 E-value=15 Score=43.79 Aligned_cols=62 Identities=23% Similarity=0.160 Sum_probs=35.2
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhc--CCcEEEEeCcHHH-HHHHHHHHHHHhhhcCCeEEEe
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLS--GQGVHIVTISDYL-AKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~--g~~V~VvT~n~yL-A~Rd~e~~~~l~~~lglsv~~i 155 (816)
+..|. ..-++||.|||-++...+...+.. |+.|.+++.-.|= +. .+++......+|+.+...
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA--~EQLk~ya~iLgv~v~~a 413 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGG--REQLHSYGRQLGIAVHEA 413 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccH--HHHHHHhhcccCceeEec
Confidence 34555 455889999997665544433443 4678887753321 11 234444556667766543
No 234
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=83.70 E-value=4.8 Score=47.11 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhcC--CcEEEEeCcHHHHHHHHH
Q psy2371 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLSG--QGVHIVTISDYLAKRDAE 139 (816)
Q Consensus 63 ~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e 139 (816)
-+|=|++.+.-...-++. .-|..+++..-.|. ..++--|+|||.+.++-+...-... .+..+-+-|+-|+.+...
T Consensus 147 ~~a~a~l~~ieskIanfD--~~Q~kaa~~~~~G~qrIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 147 LEANALLDTIESKIANFD--TDQTKAAFQSGFGKQRIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred chhHHHHHHHHHHHhccc--chhheeeeecCCchhhhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHH
Confidence 345555554433333222 24777777777776 7788899999999888776433333 357888899999999888
Q ss_pred HHHHHhhh--------cCCeEEEecCCCCHH-----HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEe
Q psy2371 140 WMSVLYNW--------LGLSIGVNSSEISHS-----LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVIL 206 (816)
Q Consensus 140 ~~~~l~~~--------lglsv~~i~~~~~~~-----~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~Iv 206 (816)
-...||-. -.+-+...-||.+.+ -+..+--..+.|+-.|. +||.+-..+-...+ ...-.++++|
T Consensus 225 lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~-~F~~aC~eli~~~~--~~~~yD~ilI 301 (660)
T COG3972 225 LVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGN-GFDAACKELIADIN--NKKAYDYILI 301 (660)
T ss_pred HHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCc-chHHHHHHHHHhhh--ccccccEEEe
Confidence 88887732 234455666666532 23333234688874443 58876654332221 2345778888
Q ss_pred cchhhh
Q psy2371 207 DEIDSI 212 (816)
Q Consensus 207 DEaDs~ 212 (816)
||+-..
T Consensus 302 DE~QDF 307 (660)
T COG3972 302 DESQDF 307 (660)
T ss_pred cccccC
Confidence 887643
No 235
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.62 E-value=9.9 Score=44.08 Aligned_cols=88 Identities=18% Similarity=0.112 Sum_probs=53.3
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHH-HHhh
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL-KKKS 167 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~-r~~~ 167 (816)
..|. ..-++||.|||-+....+....+ .+..+.++|...|-. --.+++..+.+.+|+.+..+....+... ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~~~dl~~al~~l 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch-hHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh
Confidence 4565 56799999999777655543222 235677777766543 2344566777888998876655433221 1122
Q ss_pred cCC-CEEEECCCcch
Q psy2371 168 YEA-DITYGTNNEFG 181 (816)
Q Consensus 168 y~~-dI~ygT~~~l~ 181 (816)
.++ .|.+-|+|+..
T Consensus 268 ~~~d~VLIDTaGrsq 282 (420)
T PRK14721 268 RGKHMVLIDTVGMSQ 282 (420)
T ss_pred cCCCEEEecCCCCCc
Confidence 244 46677988864
No 236
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.34 E-value=12 Score=46.02 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=75.4
Q ss_pred hhhhHHhhhcchhcccccccchHHHHHHHhcCeE--EEcCCC-Cc-ccc-----ccCcC-----eEecCh--HHHHHHHH
Q psy2371 358 TFQNYFRMYKKISGMTGTAETEAYEFQEIYKLET--ITVPPN-KI-NKR-----KDLQD-----KIYKTM--EEKYQAIL 421 (816)
Q Consensus 358 t~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~v--v~IPt~-~p-~~r-----~d~~d-----~v~~t~--~~K~~ai~ 421 (816)
.++..+.....+.-|+||+... +.|.+..|++. ...++| .| ..+ .+-++ .-|.+. .+-+..+.
T Consensus 433 ~~~~i~~~~~svil~SgTL~p~-~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~ 511 (705)
T TIGR00604 433 ALKPLFERVRSVILASGTLSPL-DAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLG 511 (705)
T ss_pred HHHHHHHhcCEEEEecccCCcH-HHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHH
Confidence 3455666667788899999763 34666677642 111111 11 000 00110 112112 23344455
Q ss_pred HHHHhhcc-CCCcEEEEEcccHhHHHHHHHHHhCCCC------eEEEc-CCc-hHHHHHHHHHc----CCCccEEEec--
Q psy2371 422 MDIKNCYI-KEQPVLVGTTSIENSELLSNILKKNNLP------HSVLN-AKQ-HKLEAQIIAQA----GHPKMITIAT-- 486 (816)
Q Consensus 422 ~~i~~~~~-~grpVLVft~si~~se~Ls~~L~~~gi~------~~vLn-ak~-~~rEa~ii~~A----g~~g~VtIAT-- 486 (816)
+.|.+..+ ....+|||++|-..-+.+.+.+.+.|+. ..++- ++. .+++.-+-.+. ...|+|+.|+
T Consensus 512 ~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~g 591 (705)
T TIGR00604 512 ELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAG 591 (705)
T ss_pred HHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecC
Confidence 55444332 2235999999999999999988876541 12222 221 23333332221 2357899999
Q ss_pred CccccCcccc
Q psy2371 487 NMAGRGTDII 496 (816)
Q Consensus 487 nmAGRGtDI~ 496 (816)
.-.+=|+|+.
T Consensus 592 Gk~sEGIDf~ 601 (705)
T TIGR00604 592 GKVSEGIDFC 601 (705)
T ss_pred CcccCccccC
Confidence 8889999996
No 237
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=83.05 E-value=1.8 Score=45.12 Aligned_cols=63 Identities=27% Similarity=0.261 Sum_probs=41.7
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
+|+...|-.+-||+. .|. ++.+.+|+|||+-+.=-++-.+.. |..|..+|.. +=..+..++|.
T Consensus 3 TGI~~LD~~l~GGip--~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-e~~~~l~~~~~ 68 (226)
T PF06745_consen 3 TGIPGLDELLGGGIP--KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-EPPEELIENMK 68 (226)
T ss_dssp -SSTTHHHHTTTSEE--TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-S-HHHHHHHHH
T ss_pred CCchhHHHhhcCCCC--CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-CCHHHHHHHHH
Confidence 567777888877765 455 899999999998766666656677 9999888863 33343333333
No 238
>PRK05748 replicative DNA helicase; Provisional
Probab=82.81 E-value=24 Score=41.08 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=57.2
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEe---CcHHHHHHHHHHHHHHhhhcCCeEEEe-cCCCCHHHH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVT---ISDYLAKRDAEWMSVLYNWLGLSIGVN-SSEISHSLK 164 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT---~n~yLA~Rd~e~~~~l~~~lglsv~~i-~~~~~~~~r 164 (816)
+..|. +.-+.||.|||.-++=-++..|. .|.+|.+++ +...|+.|-.. ..-++....+ .+.++..+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~------~~~~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLC------AEGNIDAQRLRTGQLTDDDW 273 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH------HhcCCCHHHhhcCCCCHHHH
Confidence 35676 78899999999655544443344 388888876 44555555322 1223333322 233443331
Q ss_pred H-------hhcCCCEEEECCCcchhhhhhhhhccCCCccccc-cceEEEecchhh
Q psy2371 165 K-------KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQR-KLNFVILDEIDS 211 (816)
Q Consensus 165 ~-------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r-~~~~~IvDEaDs 211 (816)
. ...+..+-+-.+..+..+.++..+.. -.... +++++|||=..-
T Consensus 274 ~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~---~~~~~~~~~~vvIDyL~l 325 (448)
T PRK05748 274 PKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRR---LAQEHGGLGLILIDYLQL 325 (448)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH---HHHhcCCCCEEEEccchh
Confidence 1 01123343332333556666654421 01112 588999996653
No 239
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=82.14 E-value=1.5 Score=46.10 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=38.8
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY 132 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~y 132 (816)
+|....|-++-||+. .|. +..+.+|+|||.-+.--++..+..|..|..++.-.-
T Consensus 9 tGi~~LD~~l~gG~~--~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 9 TGNEELDRKLGGGIP--FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cCCHHHHHhhCCCCc--CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 566667777767643 566 778999999997766666645567888888887433
No 240
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=81.56 E-value=4.7 Score=42.21 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=59.3
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeC---cHHHHHHHHHHHHHHhhhcCCeEEEecCC-CCHHH--
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTI---SDYLAKRDAEWMSVLYNWLGLSIGVNSSE-ISHSL-- 163 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~---n~yLA~Rd~e~~~~l~~~lglsv~~i~~~-~~~~~-- 163 (816)
..|. +..+.||+|||..++=-++..+.. |..|..++. ..+++.|.. ....|+....+..+ .+.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~ 84 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLL------ASESGISLSKLRTGSLSDEDWE 84 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHH------HHhcCCCHHHHhcCCCCHHHHH
Confidence 4676 788999999996655445544555 888888873 344444432 12234433222222 22111
Q ss_pred H-----HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 164 K-----KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 164 r-----~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
+ .......+.+..++.+..+.|.+.+.. .....+++++|||=.+.+
T Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~---~~~~~~~~~vvID~l~~l 135 (242)
T cd00984 85 RLAEAIGELKELPIYIDDSSSLTVSDIRSRARR---LKKEHGLGLIVIDYLQLM 135 (242)
T ss_pred HHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHH---HHHhcCCCEEEEcCchhc
Confidence 0 111123444444555666777765531 112237889999966644
No 241
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.85 E-value=2.4 Score=50.50 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=36.6
Q ss_pred eeeecCCCCchHHHHHHHHHH------HhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLN------SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~------aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
|+|+..|||||.+++=-+... .|.+++|+|+.||+-++.=++ .+.-.||.
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis----~VLPeLGe 285 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS----RVLPELGE 285 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH----Hhchhhcc
Confidence 899999999998876544321 256778999999999887555 44445554
No 242
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=80.46 E-value=2.5 Score=44.73 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=45.2
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+|+..-|-.+-||+. .|. +..+.+|+|||.-+.--++..+..|..|..+|. ++-+.+..+.|..
T Consensus 5 tGi~~LD~~l~GG~~--~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 5 TGIPGMDEILHGGIP--ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred cCcHhHHHHhcCCCc--CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHH
Confidence 566666777777754 566 889999999998776666655667888988884 4555555555543
No 243
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=79.95 E-value=5.3 Score=49.17 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=46.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcC--CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSG--QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g--~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
++-+.=|=|||.+..+.++..+-.+ ..+.|..||.+=.+-.++-...-++++|.+-.+...
T Consensus 235 vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d 297 (758)
T COG1444 235 VLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPD 297 (758)
T ss_pred EEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccc
Confidence 7788999999999998886544333 368888888887777777777788889887665443
No 244
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.26 E-value=6.3 Score=46.74 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=43.2
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhC-CCCeEEEcCCchHHHH--HHHHHcCCCccEEEecCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKN-NLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNM 488 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~-gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnm 488 (816)
..|..|||.++++.-+..+.+.|++. |.++.++|+.....|+ ....-......|+|+|..
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 35778999999999999999999864 7889999998544333 221112224579999954
No 245
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.96 E-value=28 Score=40.44 Aligned_cols=82 Identities=27% Similarity=0.300 Sum_probs=49.7
Q ss_pred eeecCCCCchHHHH-HHHHHHHhcCCcEEEEeCcHH-HHHHHHHHHHHHhhhcCCeEEEecCCCCHH-H------HHhhc
Q psy2371 98 SEMQTGEGKTLVAT-LAAYLNSLSGQGVHIVTISDY-LAKRDAEWMSVLYNWLGLSIGVNSSEISHS-L------KKKSY 168 (816)
Q Consensus 98 aem~TGEGKTL~~~-Lpa~l~aL~g~~V~VvT~n~y-LA~Rd~e~~~~l~~~lglsv~~i~~~~~~~-~------r~~~y 168 (816)
.-+--|+|||-+++ |+-|+.- .|+.|.+|+.--| -|. .+++..+.+..|+.+-....+.+|- . +.+..
T Consensus 105 mvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA--~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~ 181 (451)
T COG0541 105 MVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAA--IEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEE 181 (451)
T ss_pred EEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHH--HHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHc
Confidence 34556999998765 4445444 8888888776544 222 3567788888888887664444442 1 11222
Q ss_pred CCCE-EEECCCcchh
Q psy2371 169 EADI-TYGTNNEFGF 182 (816)
Q Consensus 169 ~~dI-~ygT~~~l~f 182 (816)
.+|| ++-|.||+..
T Consensus 182 ~~DvvIvDTAGRl~i 196 (451)
T COG0541 182 GYDVVIVDTAGRLHI 196 (451)
T ss_pred CCCEEEEeCCCcccc
Confidence 3454 3447777643
No 246
>PRK05595 replicative DNA helicase; Provisional
Probab=78.56 E-value=40 Score=39.21 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=60.6
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCc---HHHHHHHHHHHHHHhhhcCCeEEEec-CCCCHHHH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTIS---DYLAKRDAEWMSVLYNWLGLSIGVNS-SEISHSLK 164 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n---~yLA~Rd~e~~~~l~~~lglsv~~i~-~~~~~~~r 164 (816)
+..|. |.-+.||.|||..++=-+...|. .|.+|.+++.= ..|+.|... ...|++..-+. +..+..+.
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a------~~~~v~~~~~~~~~l~~~e~ 271 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLC------SEANVDMLRLRTGNLEDKDW 271 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHH------HhcCCCHHHHhcCCCCHHHH
Confidence 34566 67899999999765544443344 58889888753 555555322 22344433222 22333221
Q ss_pred Hh-------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 165 KK-------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 165 ~~-------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
.. .....+-+-.+..+..+.++..+.. .....+++++|||=..-
T Consensus 272 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~---~~~~~~~~~vvIDylql 322 (444)
T PRK05595 272 ENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRR---LKIEHGIDMILIDYLQL 322 (444)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH---HHHhcCCCEEEEeHHHh
Confidence 10 0123444444555667777765531 11224689999996653
No 247
>PHA02533 17 large terminase protein; Provisional
Probab=78.09 E-value=11 Score=45.09 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=48.4
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
+.+.|-|..-+-.++.++ ++...=.-|||.+.+..++..++ .|..|.+++++..-|+-.++.+..+++.+
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 455667765443344444 78888899999876644433344 34568999999999999888888777654
No 248
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=77.63 E-value=0.42 Score=48.88 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=24.3
Q ss_pred eeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 98 SEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 98 aem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
.-+.=|-|||.+..+.+......|. .|.|..|+.+=+...++....-.+.+|.+.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~ 57 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE 57 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-----------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc
Confidence 4567799999998887763222333 588889998755544444444444444433
No 249
>PRK05973 replicative DNA helicase; Provisional
Probab=77.43 E-value=3.9 Score=43.80 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=35.4
Q ss_pred ccchhhhh-hhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 80 RHFDVQLI-GGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 80 ~p~~VQ~~-~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
.++|...+ ||+ ..|. ++-+.+|.|||.-++--++..+..|..|.+++.
T Consensus 50 ~~~p~~~l~GGl--~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 50 ATTPAEELFSQL--KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCHHHhcCCC--CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 45665544 443 5777 889999999998877777756678888888874
No 250
>KOG2036|consensus
Probab=76.91 E-value=5.6 Score=48.10 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=64.1
Q ss_pred hhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH
Q psy2371 84 VQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS 162 (816)
Q Consensus 84 VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~ 162 (816)
-|+.++..|..|+ |-||+.|..|.+.-..-.|. .+.|-+|+.+ .+.-+|+|. +-|.+.-
T Consensus 272 K~lr~~vsLtA~R------GRGKSAALGlsiA~AVa~GysnIyvtSPspe-------NlkTlFeFv-------~kGfDaL 331 (1011)
T KOG2036|consen 272 KTLRSTVSLTASR------GRGKSAALGLSIAGAVAFGYSNIYVTSPSPE-------NLKTLFEFV-------FKGFDAL 331 (1011)
T ss_pred hhhcceEEEEecC------CCCchhhhhHHHHHHHhcCcceEEEcCCChH-------HHHHHHHHH-------Hcchhhh
Confidence 3445555554444 99999999998885444575 4777778876 455566654 2222211
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccC----------CCccccccceEEEecchhhh
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFN----------SNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~----------~~~~~~r~~~~~IvDEaDs~ 212 (816)
+-++--..||++.||++|---..|=|+-.+ .+..++...+.+|||||-.|
T Consensus 332 ~Yqeh~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAI 391 (1011)
T KOG2036|consen 332 EYQEHVDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAI 391 (1011)
T ss_pred cchhhcchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcC
Confidence 112223568999999987433333222111 12234456788999998766
No 251
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=76.60 E-value=9.7 Score=44.69 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=62.7
Q ss_pred eeeecCCCCchHHHHH-HHHHHHhc---CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHH-hhcCCC
Q psy2371 97 ISEMQTGEGKTLVATL-AAYLNSLS---GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKK-KSYEAD 171 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L-pa~l~aL~---g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~-~~y~~d 171 (816)
+.+++=|-|||...+. .+|...+. |..|.++++++.-|...++.+..+.+......... ..+. ..+...
T Consensus 26 ~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~------~~~~~~~~~~~ 99 (477)
T PF03354_consen 26 YLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRK------KPKIIKSNKKE 99 (477)
T ss_pred EEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccch------hhhhhhhhceE
Confidence 7888999999965544 44443333 45689999999999999988887776521110000 0011 112345
Q ss_pred EEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 172 ITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 172 I~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
|++-.+|.+ |..+ +.+.+...-...+++|+||+|..=
T Consensus 100 i~~~~~~s~-~~~~----s~~~~~~dG~~~~~~i~DE~h~~~ 136 (477)
T PF03354_consen 100 IEFPKTGSF-FKAL----SSDADSLDGLNPSLAIFDELHAHK 136 (477)
T ss_pred EEEcCCCcE-EEEE----ecCCCCccCCCCceEEEeCCCCCC
Confidence 665544443 2222 222233333457899999999864
No 252
>KOG0391|consensus
Probab=76.24 E-value=4.3 Score=51.52 Aligned_cols=103 Identities=25% Similarity=0.415 Sum_probs=63.3
Q ss_pred eeeecCCCCchH-HHHHHHHHHHhcCC-c-EEEEeCcHHHHHHHHHHHHHHhhhc-CCeEEEecCCCC-HHHHHhhc---
Q psy2371 97 ISEMQTGEGKTL-VATLAAYLNSLSGQ-G-VHIVTISDYLAKRDAEWMSVLYNWL-GLSIGVNSSEIS-HSLKKKSY--- 168 (816)
Q Consensus 97 Iaem~TGEGKTL-~~~Lpa~l~aL~g~-~-V~VvT~n~yLA~Rd~e~~~~l~~~l-glsv~~i~~~~~-~~~r~~~y--- 168 (816)
|.-=.-|=|||+ +..|.|++.+-.|. | -+||.||-.+- +|=-.|-+|. |+++...+|... ..++++..
T Consensus 638 ILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL----nWEMElKRwcPglKILTYyGs~kErkeKRqgW~kP 713 (1958)
T KOG0391|consen 638 ILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL----NWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKP 713 (1958)
T ss_pred eehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh----hhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCC
Confidence 444456999997 55666666555442 3 45677776553 4655677776 899888887532 22333332
Q ss_pred CC-CEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 169 EA-DITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 169 ~~-dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
+| ||.+.+=.-+ ++|.-++ ..+.-.|+|||||+.|
T Consensus 714 naFHVCItSYklv----~qd~~AF-----krkrWqyLvLDEaqnI 749 (1958)
T KOG0391|consen 714 NAFHVCITSYKLV----FQDLTAF-----KRKRWQYLVLDEAQNI 749 (1958)
T ss_pred CeeEEeehhhHHH----HhHHHHH-----Hhhccceeehhhhhhh
Confidence 22 6766443333 3565432 3457789999999976
No 253
>PRK08760 replicative DNA helicase; Provisional
Probab=75.20 E-value=41 Score=39.73 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=59.8
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeC---cHHHHHHHHHHHHHHhhhcCCeEEEe-cCCCCHHHH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTI---SDYLAKRDAEWMSVLYNWLGLSIGVN-SSEISHSLK 164 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~---n~yLA~Rd~e~~~~l~~~lglsv~~i-~~~~~~~~r 164 (816)
+..|. |+-+.||.|||..++--+...|. .|++|.+++. ...|+.|-.... .+++..-+ .|.++.++.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~------s~i~~~~i~~g~l~~~e~ 299 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN------GRINAQRLRTGALEDEDW 299 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh------CCCcHHHHhcCCCCHHHH
Confidence 45677 78899999999766655553444 3888887764 234554432221 12222211 233443322
Q ss_pred H-------hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchh
Q psy2371 165 K-------KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210 (816)
Q Consensus 165 ~-------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaD 210 (816)
. ...+..+.+-....+..+.++..+.. .....++.++|||=..
T Consensus 300 ~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~---l~~~~~~~lVvIDyLq 349 (476)
T PRK08760 300 ARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRR---LKREHDLGLIVIDYLQ 349 (476)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHH---HHHhcCCCEEEEecHH
Confidence 1 11234555555555667777765421 1122468899999665
No 254
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=74.71 E-value=8.4 Score=39.44 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
.|. ..-+++|+|||..+.-.++..+-.|..|..++..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 566 5678999999988876666444567777777664
No 255
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=74.14 E-value=8.2 Score=45.60 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
.|. +..+.+|+|||..+.--++..+..|..|..++.. +-..+..+.+
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~ 320 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNA 320 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHH
Confidence 355 6789999999987766666566789889888754 3344444444
No 256
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=73.75 E-value=9.3 Score=46.45 Aligned_cols=108 Identities=25% Similarity=0.214 Sum_probs=70.8
Q ss_pred cchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcC----CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 81 HFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSG----QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g----~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
..|-|..++.......++.+.-|+|||-|.+--+....-.+ ..+.++|-|+--|....+. +.+.+|.
T Consensus 3 Ln~~Q~~av~~~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~R---l~~~~~~------ 73 (655)
T COG0210 3 LNPEQREAVLHPDGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRER---LLKLLGL------ 73 (655)
T ss_pred CCHHHHHHHhcCCCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHH---HHHHhCc------
Confidence 45677777765533348899999999988776655322221 3589999999999844333 3444443
Q ss_pred CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 157 SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 157 ~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
+. ...+.++|.-.|+...|++.... ..-+-++-|+|+-|.-
T Consensus 74 ~~----------~~~~~v~TfHs~~~~~lr~~~~~-----~~~~~~~~i~d~~d~~ 114 (655)
T COG0210 74 PA----------AEGLTVGTFHSFALRILRRHGER-----LGLNANFTILDSDDQL 114 (655)
T ss_pred cc----------ccCcEEeeHHHHHHHHHHHHHHh-----cCCCCCCEEecHHHHH
Confidence 10 01289999999999999976531 1134567777776643
No 257
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=73.33 E-value=3.8 Score=46.27 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=13.6
Q ss_pred eeeecCCCCchHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLA 113 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lp 113 (816)
+.-+++|+|||.+.--.
T Consensus 59 lI~G~~GtGKT~l~~~v 75 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKV 75 (394)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 77899999999875543
No 258
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=73.27 E-value=4.6 Score=44.67 Aligned_cols=46 Identities=28% Similarity=0.182 Sum_probs=35.2
Q ss_pred ceeeecCCCCchHHHHHHHHHHHhcCCc-EEEEeCcHHH---HHHHHHHH
Q psy2371 96 NISEMQTGEGKTLVATLAAYLNSLSGQG-VHIVTISDYL---AKRDAEWM 141 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~Lpa~l~aL~g~~-V~VvT~n~yL---A~Rd~e~~ 141 (816)
-+.-=.||-||.-..+--++.|.+.|+. ++-+|++..| |.||-..+
T Consensus 65 f~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 65 FFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred EEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHh
Confidence 3555579999998888778889999985 8889999888 45555433
No 259
>PRK05636 replicative DNA helicase; Provisional
Probab=72.69 E-value=68 Score=38.23 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=58.7
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEe---CcHHHHHHHHHHHHHHhhhcCCeEEEe-cCCCCHHHH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVT---ISDYLAKRDAEWMSVLYNWLGLSIGVN-SSEISHSLK 164 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT---~n~yLA~Rd~e~~~~l~~~lglsv~~i-~~~~~~~~r 164 (816)
+..|. |.-+.||.|||.-++--+...++ .|+.|.+++ +..+|+.|..... -+++...+ .+.++.++.
T Consensus 262 l~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~------s~v~~~~i~~g~l~~~e~ 335 (505)
T PRK05636 262 LRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE------AEVRLSDMRGGKMDEDAW 335 (505)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh------cCCCHHHHhcCCCCHHHH
Confidence 34566 77899999999655433333344 477888774 4455666543222 22322222 233444332
Q ss_pred Hh-------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 165 KK-------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 165 ~~-------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
.. ..+..+.+-....+..+.++..... -....+++++|||=..-
T Consensus 336 ~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~---~~~~~~~~lvvIDYLql 386 (505)
T PRK05636 336 EKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARR---LKQKHDLKLIVVDYLQL 386 (505)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH---HHHhcCCCEEEEcchHh
Confidence 11 1134455444445556667655421 11224688999996663
No 260
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.97 E-value=8.9 Score=45.16 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=33.5
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
.|. +..+++|+|||..++--++-.+..|..|..++. +|=..|....|.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~ 311 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAY 311 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHH
Confidence 444 899999999998877777755667878877763 444444444443
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=71.04 E-value=6.2 Score=40.13 Aligned_cols=36 Identities=33% Similarity=0.235 Sum_probs=24.0
Q ss_pred ceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 96 NISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
-+..++||.|||-.+...+....-.|..|..++.++
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 388999999999765555543333688888877654
No 262
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=70.01 E-value=11 Score=37.61 Aligned_cols=65 Identities=18% Similarity=0.045 Sum_probs=44.7
Q ss_pred CcEEEEEcccHhHHHHHHHHHhCCC--CeEEEcCCchHHHHHHHHHcCCCccEEEecC--ccccCcccc
Q psy2371 432 QPVLVGTTSIENSELLSNILKKNNL--PHSVLNAKQHKLEAQIIAQAGHPKMITIATN--MAGRGTDII 496 (816)
Q Consensus 432 rpVLVft~si~~se~Ls~~L~~~gi--~~~vLnak~~~rEa~ii~~Ag~~g~VtIATn--mAGRGtDI~ 496 (816)
..+||||+|-+..+.+.+.++..+. ...++.......+..+-.+.-..+.|++|+. -..=|+|++
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQGSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEESTCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeecCcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 4599999999999999999987642 2234433344455455555556789999998 889999996
No 263
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=69.81 E-value=6.1 Score=42.92 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.7
Q ss_pred ccceEEEecchhhhhhh
Q psy2371 199 RKLNFVILDEIDSILID 215 (816)
Q Consensus 199 r~~~~~IvDEaDs~LiD 215 (816)
.+.+++||||||.|-.|
T Consensus 108 ~~~kviiidead~mt~~ 124 (325)
T COG0470 108 GGYKVVIIDEADKLTED 124 (325)
T ss_pred CCceEEEeCcHHHHhHH
Confidence 57899999999999854
No 264
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.08 E-value=2.8 Score=46.40 Aligned_cols=56 Identities=27% Similarity=0.402 Sum_probs=33.5
Q ss_pred HHHhccccchhhhhhhccc-------cCCc-eeeecCCCCchHH-HHHHHHHHHhcCCcEEEEeCcH
Q psy2371 74 KRVLKMRHFDVQLIGGIAL-------HYGN-ISEMQTGEGKTLV-ATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 74 ~R~lg~~p~~VQ~~~~~~L-------~~G~-Iaem~TGEGKTL~-~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
.|++..+.-....++.|.+ ..|- ++-++||||||-+ |+|-=|+| ..+..||+|--|
T Consensus 98 lR~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN--~~~~~HIlTIED 162 (353)
T COG2805 98 LRLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYIN--KHKAKHILTIED 162 (353)
T ss_pred EeccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHh--ccCCcceEEecC
Confidence 4555444444455555433 3576 8899999999865 33333333 245688988543
No 265
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=68.99 E-value=13 Score=38.67 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
.|. +..+.+|+|||..+.--++-.+..|..|..+|... -+.+..+.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~ 63 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYA 63 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHH
Confidence 355 67889999998755544554456788888887754 334333333
No 266
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=68.63 E-value=9.4 Score=42.52 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=12.5
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+.-+++|+|||.+.-
T Consensus 44 ~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 44 FIYGKTGTGKTAVTK 58 (365)
T ss_pred EEECCCCCCHHHHHH
Confidence 778999999997654
No 267
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=68.54 E-value=8 Score=40.27 Aligned_cols=51 Identities=31% Similarity=0.330 Sum_probs=33.5
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
+|+..-|-.+-|++ ..|. +..+++|+|||..+.--++..+..|.+|..++.
T Consensus 4 tGi~~LD~~l~GGi--~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 4 TGVEGLDKLLEGGI--PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CChhhHHHhhcCCC--cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34555555555553 3566 788999999987665444433456888877775
No 268
>PF12846 AAA_10: AAA-like domain
Probab=68.45 E-value=13 Score=39.53 Aligned_cols=39 Identities=21% Similarity=0.058 Sum_probs=29.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAK 135 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~ 135 (816)
++-+.||+|||.....-+...+..|.++.|+=|..+.+.
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 678999999997766555545567888999977755544
No 269
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=68.06 E-value=6.1 Score=39.22 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=25.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+.-.+-|+|||.+++-.++..+..|+.|++|=
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 34567899999988877776777899998883
No 270
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=67.78 E-value=13 Score=38.65 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=28.4
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
..|. ...+++|+|||..+.-.++..+..|..|..++.-
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3566 6779999999987766666555677888877765
No 271
>KOG0388|consensus
Probab=66.35 E-value=32 Score=42.08 Aligned_cols=133 Identities=23% Similarity=0.309 Sum_probs=78.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcC---CcEEEEeCcHHHHHHHHHHHHHHhhhc-CCeEEEecCCCCHH--H-----HH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSG---QGVHIVTISDYLAKRDAEWMSVLYNWL-GLSIGVNSSEISHS--L-----KK 165 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~l-glsv~~i~~~~~~~--~-----r~ 165 (816)
|.-=.-|=|||.-+.--+...|-.. -+.+||||..-|- +|...+.+|+ .++|.-.-|+.+.- - |+
T Consensus 590 ILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~----NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rK 665 (1185)
T KOG0388|consen 590 ILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLH----NWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRK 665 (1185)
T ss_pred eehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHh----HHHHHHHHhCccceeecCcCChhhhHHHHHhcchh
Confidence 5555669999985443332222221 1479999987774 5888899988 57776666654321 1 22
Q ss_pred hhc----CCCEEEECCCcchhh--hhhhhhccCCCccccccceEEEecchhhh-----------hhhccCCcceeccc-c
Q psy2371 166 KSY----EADITYGTNNEFGFD--YLRDNMVFNSNDRVQRKLNFVILDEIDSI-----------LIDEARTPLIISGE-I 227 (816)
Q Consensus 166 ~~y----~~dI~ygT~~~l~fD--yLrD~~~~~~~~~~~r~~~~~IvDEaDs~-----------LiDea~tpliisg~-~ 227 (816)
..| ..||+++|=--+..| ||+. -+-.|.|+|||-.| |.-..|.-|.+.|. .
T Consensus 666 nmY~rna~fhVviTSYQlvVtDeky~qk-----------vKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 666 NMYRRNAPFHVVITSYQLVVTDEKYLQK-----------VKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPI 734 (1185)
T ss_pred hhhccCCCceEEEEeeeeeechHHHHHh-----------hhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCcc
Confidence 234 348887665433221 2211 14579999999865 44456788888885 4
Q ss_pred ccch-hhhHHHHhhHhhhc
Q psy2371 228 KNNA-QYFYKIINPIPKLL 245 (816)
Q Consensus 228 ~~~~-~~y~~~i~~iv~~L 245 (816)
+... +++. .+.-|.+.|
T Consensus 735 QNsMqELWA-LLHFIMPsL 752 (1185)
T KOG0388|consen 735 QNSMQELWA-LLHFIMPSL 752 (1185)
T ss_pred chHHHHHHH-HHHHHhhHh
Confidence 4332 4555 555555555
No 272
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=66.27 E-value=7.2 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=24.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|+-.+-|.|||.+++..+...+..|+.|.++--
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEcCCCCccHHHHHHHHHhcccccccccccccc
Confidence 456788999998877666666678999888765
No 273
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=65.83 E-value=12 Score=36.54 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEcCCchHHHHHHHHHcCCCccEEEecCcc---
Q psy2371 417 YQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN----NLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMA--- 489 (816)
Q Consensus 417 ~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~----gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmA--- 489 (816)
...+++.+.+...+|+.|+|.|.+.+.++.|.+.|-.. -+||...+..... ...|+|+++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~-----------~~PV~i~~~~~~~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPAA-----------RQPVLITWDQEANP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SSTT-------------SEEEE-TTS---
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCCC-----------CCeEEEecCcccCC
Confidence 47888999889999999999999999999999999754 5788885443221 13699999884
Q ss_pred ccCcccc
Q psy2371 490 GRGTDII 496 (816)
Q Consensus 490 GRGtDI~ 496 (816)
.-+-|+.
T Consensus 84 ~~~~~vL 90 (137)
T PF04364_consen 84 NNHADVL 90 (137)
T ss_dssp -S--SEE
T ss_pred CCCCCEE
Confidence 3335653
No 274
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=65.79 E-value=22 Score=42.37 Aligned_cols=103 Identities=16% Similarity=0.013 Sum_probs=60.8
Q ss_pred eeeecCCCCchH-HHHHHHHH---HHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcC-CeEEEecCCCCHHHHHhhcCCC
Q psy2371 97 ISEMQTGEGKTL-VATLAAYL---NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLG-LSIGVNSSEISHSLKKKSYEAD 171 (816)
Q Consensus 97 Iaem~TGEGKTL-~~~Lpa~l---~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg-lsv~~i~~~~~~~~r~~~y~~d 171 (816)
+..|+-|-|||- ++++..+. +...|.+..|+.+|.+=|..-+..++....... ++. +..|+.+
T Consensus 90 fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~~l~~------------~~~~q~~ 157 (546)
T COG4626 90 FIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDMVKRDDDLRD------------LCNVQTH 157 (546)
T ss_pred EEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHHHHhCcchhh------------hhccccc
Confidence 678999999995 44455553 235688899999999988887777765554433 111 1222222
Q ss_pred EEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 172 ITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 172 I~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
....|.+.- .-+|+- ++...+...--+.+++|+||.|..-
T Consensus 158 s~~i~~~~~-~s~ik~-~aa~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 158 SRTITHRKT-DSTIKA-VAADPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred eeEEEeccc-ceeeee-eccCCCcccCCCcceEEEehhhhhc
Confidence 222222221 112222 1222334444578899999999866
No 275
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.73 E-value=12 Score=48.62 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=40.9
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHhcC-----CcEEEEeCcH----HHHHHHHHHHHHHhhhc
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSLSG-----QGVHIVTISD----YLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g-----~~V~VvT~n~----yLA~Rd~e~~~~l~~~l 148 (816)
+|. ++|+.-|+|||-+-+.-.+-..+.| ..++|||-|+ ||..|+.+.+...+..+
T Consensus 9 ~G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~rL~~~~~~~ 73 (1087)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGRIHQALRAL 73 (1087)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 565 9999999999987665554333433 3589999885 68899988887776654
No 276
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=65.42 E-value=5.9 Score=42.27 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=59.1
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeC---cHHHHHHHHHHHHHHhhhcCCeEEEecCC-CCHHHHH
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTI---SDYLAKRDAEWMSVLYNWLGLSIGVNSSE-ISHSLKK 165 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~---n~yLA~Rd~e~~~~l~~~lglsv~~i~~~-~~~~~r~ 165 (816)
..|. +.-+.||.|||..++=-++-.++. |..|.+++. .++++.|.- ....|++..-+..+ +++++..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~l------a~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLL------ARLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHH------HHHHTSTHHHHHCCGCHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH------HHhhcchhhhhhccccCHHHHH
Confidence 4565 778999999997666555544555 467777775 245555433 23345544333333 3333221
Q ss_pred h-------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 166 K-------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 166 ~-------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
. .....+.+.....+..+-|++.+..-. ....++.++|||=.+-|
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~--~~~~~~~~v~IDyl~ll 142 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLK--REGKKVDVVFIDYLQLL 142 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHH--HHSTTEEEEEEEEGGGS
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHH--hhccCCCEEEechHHHh
Confidence 1 113344433333456676666542111 11157889999977644
No 277
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=65.42 E-value=21 Score=35.90 Aligned_cols=27 Identities=30% Similarity=0.193 Sum_probs=20.8
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHI 126 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~V 126 (816)
-.+|.|||-+++--++-.+-.|..|.+
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 9 TGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 456889998877777766677888888
No 278
>KOG1132|consensus
Probab=65.03 E-value=2.9 Score=51.60 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=26.9
Q ss_pred ccccchhhhhhhcccc----CC--ceeeecCCCCchHHHHHHHH
Q psy2371 78 KMRHFDVQLIGGIALH----YG--NISEMQTGEGKTLVATLAAY 115 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~----~G--~Iaem~TGEGKTL~~~Lpa~ 115 (816)
-+.||++|+.-.-.++ .+ -+.|.+||+||||+.+...+
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 3579999987654332 22 29999999999997654443
No 279
>PLN03025 replication factor C subunit; Provisional
Probab=65.00 E-value=12 Score=41.25 Aligned_cols=14 Identities=50% Similarity=0.705 Sum_probs=12.3
Q ss_pred cceEEEecchhhhh
Q psy2371 200 KLNFVILDEIDSIL 213 (816)
Q Consensus 200 ~~~~~IvDEaDs~L 213 (816)
+..++||||||.|-
T Consensus 99 ~~kviiiDE~d~lt 112 (319)
T PLN03025 99 RHKIVILDEADSMT 112 (319)
T ss_pred CeEEEEEechhhcC
Confidence 57899999999975
No 280
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=64.87 E-value=17 Score=36.19 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=28.8
Q ss_pred CCCEEEECCC----cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 169 EADITYGTNN----EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 169 ~~dI~ygT~~----~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+|+.+..|. .++.|-+|+-...-...-...+.+++||||||.|-
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~ 115 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT 115 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh
Confidence 5677777776 35777777543322122223578999999999987
No 281
>PRK04328 hypothetical protein; Provisional
Probab=63.65 E-value=11 Score=40.30 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=35.4
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
+|+..-|-.+-||+ -.|. +..+.+|+|||.-+.--++..+..|..+..++.
T Consensus 7 tGi~~LD~lL~GGi--p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 7 TGIPGMDEILYGGI--PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCchhHHHHhcCCC--cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45555566555664 3566 789999999997665555545677888888774
No 282
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=63.64 E-value=13 Score=39.99 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=27.9
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
.|. ++.+.+|+|||..++--++..+..|..|..++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 566 789999999998776666655677888877775
No 283
>PRK10436 hypothetical protein; Provisional
Probab=63.16 E-value=7.2 Score=45.76 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=31.1
Q ss_pred hccccchhhhhh-hccccCCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 77 LKMRHFDVQLIG-GIALHYGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 77 lg~~p~~VQ~~~-~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
||+.|...+..- .....+|- +.-++||+|||-+.. +++..+...+.+|+|.-|
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~--a~l~~~~~~~~~i~TiED 254 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY--SALQTLNTAQINICSVED 254 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHH--HHHHhhCCCCCEEEEecC
Confidence 555444433222 22234676 899999999997642 233445555678888543
No 284
>KOG1015|consensus
Probab=63.05 E-value=22 Score=44.80 Aligned_cols=129 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCchH---HHHHHHHHHHhcC-CcEEEEeCcHHHHHHHHHHHHHHhhhcC-------CeEEEecCCCCHHHHHhhcCC-
Q psy2371 103 GEGKTL---VATLAAYLNSLSG-QGVHIVTISDYLAKRDAEWMSVLYNWLG-------LSIGVNSSEISHSLKKKSYEA- 170 (816)
Q Consensus 103 GEGKTL---~~~Lpa~l~aL~g-~~V~VvT~n~yLA~Rd~e~~~~l~~~lg-------lsv~~i~~~~~~~~r~~~y~~- 170 (816)
|=|||| +|+-.++++--.| +.|+||||-.-+-. ||..|-+|+- |.|.-+..-..+++|.-+...
T Consensus 706 GLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~N----W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W 781 (1567)
T KOG1015|consen 706 GLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALN----WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW 781 (1567)
T ss_pred cccceehhhHHHHHHHHhhccCCceEEEEcchHHHHH----HHHHHHHhcccccccccceeehhhhccChHHHHHHHHHH
Q ss_pred ----CEEEECCCcchhhhhhhhhccC-----------CCccccccceEEEecchhhhhhhccCCcceeccccccchhhhH
Q psy2371 171 ----DITYGTNNEFGFDYLRDNMVFN-----------SNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFY 235 (816)
Q Consensus 171 ----dI~ygT~~~l~fDyLrD~~~~~-----------~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~ 235 (816)
.|.+ +|.|..|..-... ...++..+.+++|.||+|-+=-+.+
T Consensus 782 ~~~ggVmI-----iGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeks------------------ 838 (1567)
T KOG1015|consen 782 QEDGGVMI-----IGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKS------------------ 838 (1567)
T ss_pred HhcCCEEE-----EehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchH------------------
Q ss_pred HHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHH
Q psy2371 236 KIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYE 285 (816)
Q Consensus 236 ~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~ 285 (816)
.+.+.+..+.. .|.+.||-+...
T Consensus 839 -a~Skam~~irt--------------------------kRRI~LTGTPLQ 861 (1567)
T KOG1015|consen 839 -AVSKAMNSIRT--------------------------KRRIILTGTPLQ 861 (1567)
T ss_pred -HHHHHHHHHHh--------------------------heeEEeecCchh
No 285
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=62.71 E-value=23 Score=45.76 Aligned_cols=60 Identities=18% Similarity=-0.013 Sum_probs=41.7
Q ss_pred ccccchhhhhhhccccC-Cc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHH
Q psy2371 78 KMRHFDVQLIGGIALHY-GN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRD 137 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~-G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd 137 (816)
+...++-|..++-.+.. ++ ++++.-|+|||-+.-...-...-.|..|+.++||--=|.+-
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH
Confidence 45677888888865543 34 89999999999665443332234688899999996655543
No 286
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=62.70 E-value=72 Score=39.42 Aligned_cols=53 Identities=6% Similarity=-0.054 Sum_probs=42.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
++.++=|-|||-+..+.+...+. .|..|.+.+|...=|....+.+..+++.+|
T Consensus 191 V~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg 244 (752)
T PHA03333 191 AATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQ 244 (752)
T ss_pred EEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 88999999999877655443333 688899999998888888888888888665
No 287
>PRK04195 replication factor C large subunit; Provisional
Probab=62.69 E-value=32 Score=40.44 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.5
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+.-+++|+|||..+-
T Consensus 43 LL~GppG~GKTtla~ 57 (482)
T PRK04195 43 LLYGPPGVGKTSLAH 57 (482)
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999996654
No 288
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.30 E-value=12 Score=44.40 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=12.7
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+.+++||||||.|-
T Consensus 118 ~~~kV~iIDE~~~ls 132 (509)
T PRK14958 118 GRFKVYLIDEVHMLS 132 (509)
T ss_pred CCcEEEEEEChHhcC
Confidence 467899999999875
No 289
>PRK09165 replicative DNA helicase; Provisional
Probab=61.32 E-value=1.4e+02 Score=35.57 Aligned_cols=111 Identities=21% Similarity=0.181 Sum_probs=59.4
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHh---------------cCCcEEEEeC---cHHHHHHHHHHHHHHhhhcCCe
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSL---------------SGQGVHIVTI---SDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---------------~g~~V~VvT~---n~yLA~Rd~e~~~~l~~~lgls 151 (816)
+..|. |.-+.||.|||.-++=-+.-.|. .|..|.+++. ..+|+.|.. ....|++
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~l------a~~s~v~ 287 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRIL------SEQSEIS 287 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHH------HHhcCCC
Confidence 45666 78899999999654433332232 2667877753 344544432 1223443
Q ss_pred EEEec-CCCCHHHHHh-------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 152 IGVNS-SEISHSLKKK-------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 152 v~~i~-~~~~~~~r~~-------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
..-+. +.++.++... .....+.+-..+.+..+.++..+.. .....+++++|||=..-
T Consensus 288 ~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~---l~~~~~~~lvvIDyLql 352 (497)
T PRK09165 288 SSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARR---LKRQHGLDLLVVDYLQL 352 (497)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHH---HHHhcCCCEEEEcchHh
Confidence 33222 2344332211 1234566665666767777766531 11234688999996653
No 290
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.01 E-value=9.3 Score=45.03 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=13.4
Q ss_pred eeeecCCCCchHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLA 113 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lp 113 (816)
|..++.|+|||-++-+-
T Consensus 44 Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 44 IFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 77889999999765543
No 291
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.86 E-value=12 Score=42.37 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=34.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
...++-|+|||.+.-.-.-.....|+.|.+++||--=|..... =.-++++++|.+.
T Consensus 26 fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~-G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 26 FVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPG-GRTIHSFFGIPIN 81 (364)
T ss_pred EEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccC-CcchHHhcCcccc
Confidence 6678889999965433222122356678888888665554311 1246677777654
No 292
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=60.79 E-value=9.9 Score=44.14 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=40.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
++-+.||+|||..+++|.+++ . +..+.|.-|--+|+..-+ .+.+..|=.|.++.
T Consensus 48 lvig~tgSGKt~~~viP~ll~-~-~~s~iV~D~KgEl~~~t~----~~r~~~G~~V~vld 101 (469)
T PF02534_consen 48 LVIGPTGSGKTTSFVIPNLLN-Y-PGSMIVTDPKGELYEKTA----GYRKKRGYKVYVLD 101 (469)
T ss_pred EEEeCCCCCccceeeHhHHHh-c-cCCEEEEECCCcHHHHHH----HHHHHCCCEEEEee
Confidence 899999999999999999865 2 338999999999987544 34444454665554
No 293
>KOG4439|consensus
Probab=60.52 E-value=20 Score=43.67 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=70.8
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH-HHH-HcCCCc--cEEEecCccccCccccCCCCchhh
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ-IIA-QAGHPK--MITIATNMAGRGTDIILGGNIDSY 504 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~-ii~-~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~ 504 (816)
.....++|-..=...-..+...|++.|.....+||.-.-.++. ||. +--.+| +|++ -.+.++|+=+.|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL-lSLtAGGVGLNL~------ 816 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML-LSLTAGGVGLNLI------ 816 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEE-EEEccCcceeeec------
Confidence 3445555544333444667788999999999999984333332 222 222233 4443 2467778877664
Q ss_pred HHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceE
Q psy2371 505 IKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSS 572 (816)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s 572 (816)
||-|+|..|+|=++.-+.|..-|-=|.|..--.
T Consensus 817 -----------------------------------GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 817 -----------------------------------GANHLILVDLHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred -----------------------------------ccceEEEEecccCHHHHHHHHHHHHHhcccCce
Confidence 888999999999999999999999999988765
No 294
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=60.41 E-value=17 Score=47.42 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=45.5
Q ss_pred chhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcC--C---cEEEEeCcH----HHHHHHHHHHHHHhhh
Q psy2371 82 FDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSG--Q---GVHIVTISD----YLAKRDAEWMSVLYNW 147 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g--~---~V~VvT~n~----yLA~Rd~e~~~~l~~~ 147 (816)
+..|...+.......++++..|||||-|-+--.+-..|.+ . ..+|||.|+ ||..|+.+.+......
T Consensus 5 ~~~~~~~~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~ 79 (1139)
T COG1074 5 TEALQPLASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQE 79 (1139)
T ss_pred hhhhchhhcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555569999999999988776666333442 2 368999885 6778888777766554
No 295
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=60.40 E-value=10 Score=45.85 Aligned_cols=19 Identities=37% Similarity=0.330 Sum_probs=14.5
Q ss_pred ceeeecCCCCchHHHHHHH
Q psy2371 96 NISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~Lpa 114 (816)
-|..++.|.|||..+..-+
T Consensus 41 ~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3788999999997665443
No 296
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.25 E-value=11 Score=43.24 Aligned_cols=16 Identities=38% Similarity=0.383 Sum_probs=12.7
Q ss_pred eeeecCCCCchHHHHH
Q psy2371 97 ISEMQTGEGKTLVATL 112 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L 112 (816)
|.-+++|+|||..+-.
T Consensus 40 lL~GppGtGKTtLA~~ 55 (413)
T PRK13342 40 ILWGPPGTGKTTLARI 55 (413)
T ss_pred EEECCCCCCHHHHHHH
Confidence 6789999999966543
No 297
>PRK06526 transposase; Provisional
Probab=60.00 E-value=8.3 Score=41.61 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=24.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+.-+++|+|||-.+.--+...+-.|..|..++.++
T Consensus 102 ll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~ 136 (254)
T PRK06526 102 VFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ 136 (254)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence 88999999999655544443344688887766553
No 298
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=59.87 E-value=9.4 Score=42.03 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.0
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+|-|+|||.+++-.++..+..|+.|++|=
T Consensus 7 gKGGvGKTT~a~nLA~~La~~g~rVLlID 35 (296)
T TIGR02016 7 GKGGSGKSFTTTNLSHMMAEMGKRVLQLG 35 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 68999999988888877777898887763
No 299
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=59.42 E-value=7.4 Score=44.15 Aligned_cols=55 Identities=15% Similarity=0.003 Sum_probs=41.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
++-+.||+|||..+++|.++.+ +..+.|+-|.-+|...-+ ...+.+|=.|.++..
T Consensus 3 lv~g~tGsGKt~~~viP~ll~~--~~s~vv~D~Kge~~~~t~----~~r~~~G~~V~v~nP 57 (384)
T cd01126 3 LVFAPTRSGKGVGFVIPNLLTW--PGSVVVLDPKGENFELTS----EHRRALGRKVFVFDP 57 (384)
T ss_pred eEecCCCCCCccEEEccchhcC--CCCEEEEccchhHHHHHH----HHHHHcCCeEEEEcC
Confidence 6779999999999999988753 467899999999986544 333445667766554
No 300
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=59.41 E-value=85 Score=34.99 Aligned_cols=77 Identities=21% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHhcCChHHHHHHHHHHHHhcccCC-CcchhhHHHHHHHHHH-HHHHhccccchhhhhhhccccCCc--eeeecCCCCch
Q psy2371 32 VMQKLSDEELQNQTSKLKQSIHSGE-TLDSILPKAFSVCREA-SKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKT 107 (816)
Q Consensus 32 ~~~~lsd~~l~~~~~~~~~~~~~g~-~ld~~l~ea~a~vrea-~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKT 107 (816)
++..+|+++........++....+- +-.+++. -|+. .+-.+|...-|--+-||+. .|. ..-++.|+|||
T Consensus 38 ~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~-----~~~~~~~isTG~~~LD~lLgGGi~--~G~iteI~G~~GsGKT 110 (313)
T TIGR02238 38 KIKGLSEAKVDKIKEAASKIINPGFITAFEISQ-----KRKKVLKITTGSQALDGILGGGIE--SMSITEVFGEFRCGKT 110 (313)
T ss_pred HhcCCCHHHHHHHHHHHHhhhcccCccHHHHHH-----hhccCceeCCCCHHHHHHhCCCCc--CCeEEEEECCCCCCcC
Confidence 4567788777777766666543321 1112211 1111 1112444445554444443 566 46699999999
Q ss_pred HHHHHHHH
Q psy2371 108 LVATLAAY 115 (816)
Q Consensus 108 L~~~Lpa~ 115 (816)
-...-.++
T Consensus 111 ql~lqla~ 118 (313)
T TIGR02238 111 QLSHTLCV 118 (313)
T ss_pred HHHHHHHH
Confidence 76655554
No 301
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.31 E-value=15 Score=43.51 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=18.6
Q ss_pred CceeeecCCCCchHHHHHH-HHHHHhcCC
Q psy2371 95 GNISEMQTGEGKTLVATLA-AYLNSLSGQ 122 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~Lp-a~l~aL~g~ 122 (816)
.-|..++.|.|||-++-+- -.+|+..|.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~ 65 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGP 65 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCC
Confidence 3378899999999765444 355555443
No 302
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=59.09 E-value=16 Score=35.91 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=44.7
Q ss_pred cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEcC
Q psy2371 411 KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN----NLPHSVLNA 463 (816)
Q Consensus 411 ~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~----gi~~~vLna 463 (816)
.+...+...+++.+.+....|..|+|.|.+.+.++.|-+.|-.. -+||....+
T Consensus 9 l~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~ 65 (142)
T PRK05728 9 LTLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGE 65 (142)
T ss_pred cCchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCC
Confidence 35677888899999999999999999999999999999999753 478876433
No 303
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=58.46 E-value=35 Score=35.71 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=51.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEEC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGT 176 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT 176 (816)
+.-++-++|||-..+--++-....|..|.|.+|- +-...|.....--.|++ .+-+++-.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~-------------iD~R~~~~~V~Sr~G~~--------~~A~~i~~ 66 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA-------------IDTRYGVGKVSSRIGLS--------SEAVVIPS 66 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc-------------cccccccceeeeccCCc--------ccceecCC
Confidence 4556678999998777777666789999999982 22222222221111221 12355556
Q ss_pred CCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 177 NNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 177 ~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
+.++ |+++...- ...++++++||||.-
T Consensus 67 ~~~i-~~~i~~~~-------~~~~~~~v~IDEaQF 93 (201)
T COG1435 67 DTDI-FDEIAALH-------EKPPVDCVLIDEAQF 93 (201)
T ss_pred hHHH-HHHHHhcc-------cCCCcCEEEEehhHh
Confidence 6665 67766431 112388999999974
No 304
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=57.84 E-value=11 Score=40.32 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.4
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
.|.|.|||-+++-.++..|..|+.|++|=-
T Consensus 7 gKGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 7 GKGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 589999999877777767888999887743
No 305
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=57.52 E-value=15 Score=41.13 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=28.5
Q ss_pred CCCEEEECC---CcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 169 EADITYGTN---NEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 169 ~~dI~ygT~---~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+|+.+-.| ..++.|-+|+-...-...-...+.+++|||+||.|=
T Consensus 73 HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~ 120 (325)
T PRK06871 73 HPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT 120 (325)
T ss_pred CCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC
Confidence 467777665 246777777632211111233578999999999987
No 306
>PHA02542 41 41 helicase; Provisional
Probab=56.96 E-value=60 Score=38.37 Aligned_cols=44 Identities=20% Similarity=0.124 Sum_probs=29.2
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe---CcHHHHHH
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT---ISDYLAKR 136 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT---~n~yLA~R 136 (816)
..|. |.-+.+|.|||..++--|...+..|++|.+++ +...|+.|
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~R 236 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKR 236 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHH
Confidence 4565 67899999999776655543455677787775 34444444
No 307
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=56.65 E-value=12 Score=39.35 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=23.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
++-.+.|.|||.+++-.++..+-.|+.|.+|
T Consensus 6 v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 6 ITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred EecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 5678999999987776666556678888777
No 308
>PRK05580 primosome assembly protein PriA; Validated
Probab=56.49 E-value=36 Score=41.91 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh-CCCCeEEEcCCchHHHHH-HHHH-cCCCccEEEecCcc
Q psy2371 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK-NNLPHSVLNAKQHKLEAQ-IIAQ-AGHPKMITIATNMA 489 (816)
Q Consensus 416 K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~-~gi~~~vLnak~~~rEa~-ii~~-Ag~~g~VtIATnmA 489 (816)
|....+..+.+....|..|||.+++++.+..+.+.|++ .|..+.++|++....++. .... ......|+|+|..|
T Consensus 175 KT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 175 KTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 33333333333344578899999999999999999986 488899999985444332 2111 12235799999644
No 309
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=56.48 E-value=39 Score=36.75 Aligned_cols=51 Identities=16% Similarity=0.002 Sum_probs=29.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCC---cEEEEeCcHHHHHH---HHHHHHHHhhh
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQ---GVHIVTISDYLAKR---DAEWMSVLYNW 147 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~---~V~VvT~n~yLA~R---d~e~~~~l~~~ 147 (816)
|..+.-|.|||.+.++-++..++... .|.++..++.|+.. ...++..+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS 57 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH
Confidence 45788899999998887777776533 46666555555554 33344444443
No 310
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=56.33 E-value=15 Score=46.27 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.4
Q ss_pred eeecCCCCchHHHHHH
Q psy2371 98 SEMQTGEGKTLVATLA 113 (816)
Q Consensus 98 aem~TGEGKTL~~~Lp 113 (816)
+-++||+|||++.---
T Consensus 786 IyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 786 ISGMPGTGKTATVYSV 801 (1164)
T ss_pred EECCCCCCHHHHHHHH
Confidence 7999999999986543
No 311
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.85 E-value=42 Score=39.25 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 105 GKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 105 GKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
++.+..++..+.....|+.++|.|+|+.-+...++.+ ...|++++...+++++++|.... ..+|+++|.
T Consensus 210 ~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L----~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~ 284 (470)
T TIGR00614 210 PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASL----QNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284 (470)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHH----HhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 3555555554433456778899999998887766554 45799999999999988876543 469999997
No 312
>PRK09183 transposase/IS protein; Provisional
Probab=55.83 E-value=18 Score=39.02 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=26.5
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+..|. +.-+++|+|||-.+..-+......|..|..++.++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~ 140 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD 140 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH
Confidence 34455 77899999999655544543445687887776543
No 313
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=55.79 E-value=24 Score=39.58 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=28.5
Q ss_pred CCCEEEECCC----cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 169 EADITYGTNN----EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 169 ~~dI~ygT~~----~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+|+.+-.|. .++.|-+|+-...-...-...+.+++||||||.|=
T Consensus 71 HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~ 119 (328)
T PRK05707 71 HPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMN 119 (328)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCC
Confidence 4677776663 46677777643211111234578899999999986
No 314
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=55.50 E-value=61 Score=36.38 Aligned_cols=108 Identities=24% Similarity=0.266 Sum_probs=63.3
Q ss_pred hhhhhhhccccCCceeeecCCCCch-HHHHHHHHHHHh--------cC-----Cc-EEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 83 DVQLIGGIALHYGNISEMQTGEGKT-LVATLAAYLNSL--------SG-----QG-VHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 83 ~VQ~~~~~~L~~G~Iaem~TGEGKT-L~~~Lpa~l~aL--------~g-----~~-V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
+.+...+|++.=|+|.-+ |+||| +|..|.-++... .| ++ .++|+++. -|...-++--.+.+.
T Consensus 29 ~~~~~~vpVIsVGNltvG--GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~ 105 (326)
T PF02606_consen 29 KSYRLPVPVISVGNLTVG--GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARK 105 (326)
T ss_pred ccCCCCCcEEEEcccccC--CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHh
Confidence 555667777777887644 88999 445555554432 12 23 77888887 455444555566777
Q ss_pred cCCeEEEecCCCC-HHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecc
Q psy2371 148 LGLSIGVNSSEIS-HSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDE 208 (816)
Q Consensus 148 lglsv~~i~~~~~-~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDE 208 (816)
++ +.++++.-- ... -...+.+||++..-| +. .....|.++.+++|-
T Consensus 106 ~~--~~V~V~~dR~~~~~~~~~~~~~dviilDDG----------fQ---h~~L~rDl~Ivl~D~ 154 (326)
T PF02606_consen 106 LP--VPVIVGPDRVAAARAALKEFPADVIILDDG----------FQ---HRRLKRDLDIVLVDA 154 (326)
T ss_pred cC--CcEEEeCcHHHHHHHHHHHCCCCEEEEcCC----------cc---cccccCCcEEEEEeC
Confidence 77 444444321 111 122246899986543 21 123458899999996
No 315
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=54.94 E-value=13 Score=39.78 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|+ .|-|.|||-+++-.++..|..|+.|+||
T Consensus 7 v~-~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 7 VY-GKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45 5999999987776666667889998887
No 316
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.87 E-value=12 Score=45.82 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=12.7
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+.+++||||||.|-
T Consensus 123 gr~KViIIDEah~Ls 137 (700)
T PRK12323 123 GRFKVYMIDEVHMLT 137 (700)
T ss_pred CCceEEEEEChHhcC
Confidence 467899999999874
No 317
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=54.70 E-value=29 Score=38.80 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=28.1
Q ss_pred CCCEEEECCC----cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 169 EADITYGTNN----EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 169 ~~dI~ygT~~----~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+|+.+-.|. .++.|-+|+-...-...-...+.+++|||+||.|-
T Consensus 73 HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~ 121 (319)
T PRK06090 73 HPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN 121 (319)
T ss_pred CCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC
Confidence 4677666653 36667666532211112234578999999999986
No 318
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=54.69 E-value=21 Score=38.14 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=41.0
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+|+...|-.+-|++. .|+ ++.+.+|+|||+-+.=-++-.+-.|..|..||. ++.+....+++..
T Consensus 7 TGI~glD~~l~GG~p--~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 7 TGIPGLDEILGGGLP--RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred CCCcchHHHhcCCCc--CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 455556666666654 455 899999999997555444444456788888775 4555544444443
No 319
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.67 E-value=12 Score=44.15 Aligned_cols=53 Identities=32% Similarity=0.364 Sum_probs=32.2
Q ss_pred hccccchhhhhhh-ccccCCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 77 LKMRHFDVQLIGG-IALHYGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 77 lg~~p~~VQ~~~~-~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+||.|++-+..-- +.--.|- ++-++||||||-+ |=++++.+......|+|.-|
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT--LY~~L~~ln~~~~nI~TiED 294 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT--LYAALSELNTPERNIITIED 294 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH--HHHHHHHhcCCCceEEEeeC
Confidence 5555555433322 2223465 8999999999965 23334456666677888754
No 320
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.54 E-value=14 Score=37.70 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+.|+|||.+++..+...+..|+.|++|=.+
T Consensus 22 v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 22 ITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 6678899999987777776667789999888554
No 321
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=53.75 E-value=12 Score=44.93 Aligned_cols=35 Identities=34% Similarity=0.354 Sum_probs=23.4
Q ss_pred cCCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 93 HYGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 93 ~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
..|- +.-++||+|||-+. -++++.+.....+|+|.
T Consensus 315 ~~Glilv~G~tGSGKTTtl--~a~l~~~~~~~~~i~ti 350 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSL--YTALNILNTEEVNISTA 350 (564)
T ss_pred cCCeEEEECCCCCCHHHHH--HHHHHhhCCCCceEEEe
Confidence 3566 79999999999663 22334454445678774
No 322
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=53.48 E-value=10 Score=38.07 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
.|..+..+|||+++-+=| |+ +.+..... ....+-.++|+||||.+. |-+
T Consensus 113 ~r~~~~~adivi~~y~yl-~~---~~~~~~~~-~~~~~~~ivI~DEAHNL~-~~~ 161 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYL-FD---PSIRKSLF-GIDLKDNIVIFDEAHNLE-DAA 161 (174)
T ss_dssp HHHCGGG-SEEEEETHHH-HS---HHHHHHHC-T--CCCEEEEETTGGGCG-GGC
T ss_pred HHHhcccCCEEEeCHHHH-hh---HHHHhhhc-cccccCcEEEEecccchH-HHH
Confidence 466777899999886544 22 22211111 122355799999999986 543
No 323
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=53.45 E-value=31 Score=35.60 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=25.3
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcC------CcEEEEeCc
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSG------QGVHIVTIS 130 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g------~~V~VvT~n 130 (816)
.|. ...+.+|+|||..+..-+...+..| .+|..++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 566 5678999999987776666444555 566665553
No 324
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=53.35 E-value=15 Score=44.50 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=44.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
++-++||+|||..+++|.++.+ +..+.|+-|--||..-.+.+. +..|=.|-++..
T Consensus 162 LviapTgSGKg~g~VIPnLL~~--~~S~VV~DpKGEl~~~Ta~~R----~~~G~~V~vfdP 216 (606)
T PRK13897 162 LLFAPTGSGKGVGFVIPNLLFW--EDSVVVHDIKLENYELTSGWR----EKQGQKVFVWEP 216 (606)
T ss_pred EEEcCCCCCcceEEehhhHHhC--CCCEEEEeCcHHHHHHHHHHH----HHCCCeEEEEeC
Confidence 8899999999999999999863 667999999999997666444 446777776654
No 325
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=53.10 E-value=14 Score=39.72 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=24.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
++ .|-|.|||.+++-.++..|..|+.|++|
T Consensus 6 v~-gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 6 IY-GKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred EE-CCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 56 7999999998777777677889999887
No 326
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=52.96 E-value=32 Score=39.19 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=19.9
Q ss_pred chhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 180 FGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 180 l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+..|-+|+....-.......+..++||||||.|=
T Consensus 121 I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~ 154 (365)
T PRK07471 121 ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN 154 (365)
T ss_pred ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC
Confidence 4455556533211112233577899999999873
No 327
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=52.75 E-value=25 Score=36.60 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcC------CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSG------QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKK 165 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g------~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~ 165 (816)
.|. ...+++|+|||..+.--++...+.+ .+|..++...-. ..+.+..+.+.+|.. ++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~---~~~rl~~~~~~~~~~---------~~~-- 83 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTF---RPERLVQIAERFGLD---------PEE-- 83 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCc---CHHHHHHHHHHhccC---------hHh--
Confidence 566 5679999999977766655333332 567766654422 123333444444441 110
Q ss_pred hhcCCCEEEECCCcchhhhhhhhhccCCCccccc-cceEEEecchhhhhh
Q psy2371 166 KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQR-KLNFVILDEIDSILI 214 (816)
Q Consensus 166 ~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r-~~~~~IvDEaDs~Li 214 (816)
....|.+..+... +-+.+.+..-...+... +...+|||-+..++-
T Consensus 84 --~~~~i~~~~~~~~--~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 84 --VLDNIYVARAYNS--DHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred --HhcCEEEEecCCH--HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 1123555444321 11111110001112223 789999999998863
No 328
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=52.57 E-value=18 Score=40.12 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=28.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+.-+|-|.|||-+++..++..|-.|+.|++++...
T Consensus 5 ~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 5 FFGGKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred EEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 45688999999888888877788999999997653
No 329
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.44 E-value=22 Score=42.25 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.4
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
|..++.|+|||.++-
T Consensus 40 Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 40 LFSGPRGVGKTTTAR 54 (504)
T ss_pred EEECCCCCCHHHHHH
Confidence 677899999997654
No 330
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=52.28 E-value=18 Score=42.61 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=41.2
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
+|+.-.|-.+-||++ .|+ ++.+.+|+|||.-++--++..+.. |..++.||.- |=..+..++|.
T Consensus 5 TGI~gLD~il~GGlp--~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~ 70 (484)
T TIGR02655 5 TMIEGFDDISHGGLP--IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNAR 70 (484)
T ss_pred CCchhHHHhcCCCCC--CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHH
Confidence 344555555556543 565 899999999998777667756676 8888888853 33333333443
No 331
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=52.25 E-value=25 Score=39.77 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=12.9
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+..++||||||.|-
T Consensus 140 g~~rVviIDeAd~l~ 154 (351)
T PRK09112 140 GNWRIVIIDPADDMN 154 (351)
T ss_pred CCceEEEEEchhhcC
Confidence 467899999999984
No 332
>PRK12377 putative replication protein; Provisional
Probab=52.20 E-value=19 Score=38.79 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=24.7
Q ss_pred CceeeecCCCCchH-HHHHHHHHHHhcCCcEEEEeCcHH
Q psy2371 95 GNISEMQTGEGKTL-VATLAAYLNSLSGQGVHIVTISDY 132 (816)
Q Consensus 95 G~Iaem~TGEGKTL-~~~Lpa~l~aL~g~~V~VvT~n~y 132 (816)
+-+.-+++|+|||- +.++.-.+ .-.|..|.+++.++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i~~~~l 140 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVVTVPDV 140 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEEEHHHH
Confidence 34788899999994 44444332 345788888777543
No 333
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=51.88 E-value=56 Score=36.88 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=44.9
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~ 177 (816)
.|..++|+++|..-|.+.++.+... ..+..+..+.|.++..+|.....++|+++|.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTd 326 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAMQFDILLGTS 326 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhccCCEEEEec
Confidence 4678999999999888888777642 2356788888888888887777889999998
No 334
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=51.84 E-value=35 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.8
Q ss_pred eeeecCCCCchHHHHH
Q psy2371 97 ISEMQTGEGKTLVATL 112 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L 112 (816)
+.-+++|+|||..+-.
T Consensus 47 ~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 47 LITGEVGAGKTTLIRN 62 (269)
T ss_pred EEEcCCCCCHHHHHHH
Confidence 6789999999966553
No 335
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=51.77 E-value=15 Score=39.61 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=24.0
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
.|-|.|||-+++-.++..|..|+.|+||
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 8 GKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 6899999998777777778899999888
No 336
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=51.58 E-value=22 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=21.4
Q ss_pred eecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 99 EMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 99 em~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
.++.|+|||-++..-+...+-.|..|.++-
T Consensus 5 ~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 5 TGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456699999876666665455677777776
No 337
>PRK06921 hypothetical protein; Provisional
Probab=51.56 E-value=17 Score=39.37 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=21.1
Q ss_pred eeeecCCCCch-HHHHHHHHHHHhc-CCcEEEEeCcH
Q psy2371 97 ISEMQTGEGKT-LVATLAAYLNSLS-GQGVHIVTISD 131 (816)
Q Consensus 97 Iaem~TGEGKT-L~~~Lpa~l~aL~-g~~V~VvT~n~ 131 (816)
+.-++||+||| |+.++.-.+. -. |..|..++..+
T Consensus 121 ~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~~~ 156 (266)
T PRK06921 121 ALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPFVE 156 (266)
T ss_pred EEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEHHH
Confidence 77889999999 4444333211 12 66777777543
No 338
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=51.49 E-value=45 Score=30.01 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=42.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~ 160 (816)
|.-|+.|+|=-...++ +.+.-.++.|||.-..||..|......+++.+++.+.-++.+|+
T Consensus 5 iiD~PPGTgD~~l~~~----~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs 64 (81)
T PF10609_consen 5 IIDLPPGTGDEHLTLM----QYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMS 64 (81)
T ss_dssp EEE--SCSSSHHHHHH----HHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-
T ss_pred EEeCCCCCCcHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 5678899998764443 44456789999999999999999999999999999988887775
No 339
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=51.42 E-value=16 Score=37.65 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=22.0
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
+|-|.|||.+++-.++..|-.|+.|+||
T Consensus 7 gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 7 GKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5889999997776666567778888776
No 340
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=51.29 E-value=17 Score=38.01 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=27.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+-|+|||.+++--++..+..|+.|++|=-.
T Consensus 6 v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 6 IVGVKGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4456789999998887777677789999888764
No 341
>KOG4439|consensus
Probab=51.27 E-value=49 Score=40.58 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=61.3
Q ss_pred cCCceeeecCCCCchHHHHHHHHHH-H---h-cCC-----cEEEEeCcHHHHHHHHHHHHHHhhhc---CCeEEEecCCC
Q psy2371 93 HYGNISEMQTGEGKTLVATLAAYLN-S---L-SGQ-----GVHIVTISDYLAKRDAEWMSVLYNWL---GLSIGVNSSEI 159 (816)
Q Consensus 93 ~~G~Iaem~TGEGKTL~~~Lpa~l~-a---L-~g~-----~V~VvT~n~yLA~Rd~e~~~~l~~~l---glsv~~i~~~~ 159 (816)
+.|-|..-.-|-||||+-.-.++.. + . .|+ ..+||||-.-+-+ |-..+-+.+ -|+|.+..|.-
T Consensus 345 ~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~q----W~~Ev~~rl~~n~LsV~~~HG~n 420 (901)
T KOG4439|consen 345 PSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQ----WEAEVARRLEQNALSVYLYHGPN 420 (901)
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHH----HHHHHHHHHhhcceEEEEecCCc
Confidence 3566888888999999533322221 1 1 122 3789999655444 444444443 47887766653
Q ss_pred CHHHHHhh-cCCCEEEECCCcchhhhhhhhhccCCCccccc--cceEEEecchhhhh
Q psy2371 160 SHSLKKKS-YEADITYGTNNEFGFDYLRDNMVFNSNDRVQR--KLNFVILDEIDSIL 213 (816)
Q Consensus 160 ~~~~r~~~-y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r--~~~~~IvDEaDs~L 213 (816)
-.+.+... ...|||+.|-.-+..+ =.|......+..++- .-..+|+||||.|=
T Consensus 421 ~r~i~~~~L~~YDvViTTY~lva~~-~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 421 KREISAKELRKYDVVITTYNLVANK-PDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred cccCCHHHHhhcceEEEeeeccccC-CchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 22222111 2459999987655320 001111111111111 23568999999874
No 342
>PRK10689 transcription-repair coupling factor; Provisional
Probab=51.00 E-value=63 Score=42.36 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=57.4
Q ss_pred HhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECCCcchhhhhhhhhcc
Q psy2371 118 SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTNNEFGFDYLRDNMVF 191 (816)
Q Consensus 118 aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~~~l~fDyLrD~~~~ 191 (816)
...|.+|.|++++..-+.+.++.+...+ -+++++++.|+|+.++|.... ..+|++||.= + .
T Consensus 806 l~r~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI-i------e---- 872 (1147)
T PRK10689 806 ILRGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI-I------E---- 872 (1147)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch-h------h----
Confidence 3456789999999887777666665443 267889999999987765542 5799999961 1 1
Q ss_pred CCCccccccceEEEecchhhh
Q psy2371 192 NSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 192 ~~~~~~~r~~~~~IvDEaDs~ 212 (816)
.-+....++++|++.+|..
T Consensus 873 --rGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 873 --TGIDIPTANTIIIERADHF 891 (1147)
T ss_pred --cccccccCCEEEEecCCCC
Confidence 1234568899999988863
No 343
>PRK06904 replicative DNA helicase; Validated
Probab=50.86 E-value=1.3e+02 Score=35.60 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=22.8
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHH-h-cCCcEEEEe
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNS-L-SGQGVHIVT 128 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~a-L-~g~~V~VvT 128 (816)
+..|. |.-+.||.|||.-+ +-+..++ . .|.+|.+++
T Consensus 218 l~~G~LiiIaarPg~GKTafa-lnia~~~a~~~g~~Vl~fS 257 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFA-MNLCENAAMASEKPVLVFS 257 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHH-HHHHHHHHHhcCCeEEEEe
Confidence 35676 78899999999744 4444343 3 355555554
No 344
>PRK08840 replicative DNA helicase; Provisional
Probab=50.84 E-value=1.3e+02 Score=35.60 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=35.9
Q ss_pred CcchhhHHHHHHHHHHHHH----Hhccccchh----hhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEE
Q psy2371 57 TLDSILPKAFSVCREASKR----VLKMRHFDV----QLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVH 125 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R----~lg~~p~~V----Q~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~ 125 (816)
++.+++.+++..+.+.... ..|+ ||.. ++.+| +..|. |.-+.||.|||.-++--+...|+ .|++|.
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~~gi-~TG~~~LD~~~~G--~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~ 250 (464)
T PRK08840 174 NVDSILEKTLERIELLYKTPQDGVTGV-DTGFTDLNKKTAG--LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVL 250 (464)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCCc-CCCcHHHHHhhcC--CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEE
Confidence 3566777777765432211 1121 2221 22233 45677 77899999999766433332233 244554
Q ss_pred EEe
Q psy2371 126 IVT 128 (816)
Q Consensus 126 VvT 128 (816)
+++
T Consensus 251 ~fS 253 (464)
T PRK08840 251 IFS 253 (464)
T ss_pred EEe
Confidence 443
No 345
>KOG0338|consensus
Probab=50.77 E-value=26 Score=41.34 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 110 ATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 110 ~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
|.+|.+..-+....+.|.+-|..-|. -|.=++-.|||++|-+.|..+.++|..+. .+||.++|-
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AH----Rl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD 484 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAH----RLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD 484 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHH----HHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEec
Confidence 34444445556677888888876655 57778889999999999999988776543 689999885
No 346
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.70 E-value=24 Score=42.72 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=13.9
Q ss_pred eeeecCCCCchHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa 114 (816)
|..++.|.|||.++-+-+
T Consensus 42 Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 42 LFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 778899999997655443
No 347
>PRK07952 DNA replication protein DnaC; Validated
Probab=50.63 E-value=19 Score=38.64 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=24.6
Q ss_pred CceeeecCCCCchH-HHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 95 GNISEMQTGEGKTL-VATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 95 G~Iaem~TGEGKTL-~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
|-+.-+++|+|||. +.++...+ .-.|+.|.+++..+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~it~~~ 137 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNEL-LLRGKSVLIITVAD 137 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEEHHH
Confidence 45788899999994 44444443 34588888887543
No 348
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.14 E-value=12 Score=44.05 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.5
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+..++||||||.+-
T Consensus 116 ~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 116 GKYKVYIIDEVHMLT 130 (472)
T ss_pred CCeEEEEEEChHHhH
Confidence 467899999999874
No 349
>PRK14873 primosome assembly protein PriA; Provisional
Probab=50.12 E-value=58 Score=40.17 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC-C-CCeEEEcCCchHHHH--HHHHHcCCCccEEEecCcc
Q psy2371 415 EKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN-N-LPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMA 489 (816)
Q Consensus 415 ~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~-g-i~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmA 489 (816)
.|-+..++.+.+....|+.+||.++.+..+..+...|+.. | -.+.++|++....|+ .-.+-..+...|.|-|-.|
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4555666666666678999999999999999999999865 4 679999998654443 2222222234788888655
No 350
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.07 E-value=16 Score=44.39 Aligned_cols=15 Identities=13% Similarity=0.488 Sum_probs=12.9
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+++++||||||.|-
T Consensus 123 g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 123 GRFKVFMIDEVHMLT 137 (618)
T ss_pred CCceEEEEEChhhCC
Confidence 468899999999875
No 351
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.04 E-value=48 Score=39.98 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=44.4
Q ss_pred HhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 118 SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 118 aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
...+..++|.|.|...|.+.++.+. ..|+.+.++.++++..+|.... ..+|+++|.
T Consensus 254 ~~~~~k~LVF~nt~~~ae~l~~~L~----~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd 315 (572)
T PRK04537 254 RSEGARTMVFVNTKAFVERVARTLE----RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (572)
T ss_pred cccCCcEEEEeCCHHHHHHHHHHHH----HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh
Confidence 3457789999999998887776553 4589999999999987776543 468999996
No 352
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=50.04 E-value=30 Score=30.96 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
..++||+|.|.+-..|...+..|++.|+.+..|.|..
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~ 95 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGM 95 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcH
Confidence 4678999999998999999999999999866676653
No 353
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.04 E-value=14 Score=40.28 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.2
Q ss_pred cceEEEecchhhh
Q psy2371 200 KLNFVILDEIDSI 212 (816)
Q Consensus 200 ~~~~~IvDEaDs~ 212 (816)
+.+++||||||.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 4679999999987
No 354
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=49.87 E-value=19 Score=39.09 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=12.2
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..++.|+|||..+.
T Consensus 34 ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 34 LLYGPPGLGKTTLAH 48 (305)
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999995544
No 355
>PRK08506 replicative DNA helicase; Provisional
Probab=49.73 E-value=1.2e+02 Score=35.72 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=35.9
Q ss_pred cchhhHHHHHHHHHHHHH----Hhccccchhh----hhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 58 LDSILPKAFSVCREASKR----VLKMRHFDVQ----LIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 58 ld~~l~ea~a~vrea~~R----~lg~~p~~VQ----~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
+.+++.+++..+.+...+ ..| -|+... +.+| +..|. |.-+.||.|||..++--+...+-.|+.|.++
T Consensus 150 ~~~~~~~~~~~i~~~~~~~~~~~~G-i~TG~~~LD~~~~G--~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f 226 (472)
T PRK08506 150 SKEVIESTMEHIKKQKRLGNKDIIG-LDTGFVELNKMTKG--FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF 226 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCc-ccCChHHHHhhcCC--CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE
Confidence 456666777666543322 112 122222 1122 34666 7889999999965554443222345556555
Q ss_pred e
Q psy2371 128 T 128 (816)
Q Consensus 128 T 128 (816)
+
T Consensus 227 S 227 (472)
T PRK08506 227 S 227 (472)
T ss_pred e
Confidence 4
No 356
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=49.69 E-value=20 Score=37.37 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=25.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-+++|+|||.+++--+...+-.|+.|+++...
T Consensus 3 ~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 3 FFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3457899999987766666567788888888753
No 357
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=89 Score=38.66 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=21.2
Q ss_pred ECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 175 GTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 175 gT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
+-||++ ...|.. ....--+.++||+|.|-.|-.
T Consensus 402 amPGrI-----iQ~mkk-----a~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 402 AMPGKI-----IQGMKK-----AGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred cCChHH-----HHHHHH-----hCCcCCeEEeechhhccCCCC
Confidence 579987 444531 222334688999999986643
No 358
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=49.48 E-value=19 Score=40.50 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=28.6
Q ss_pred CCCEEEECCC----cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 169 EADITYGTNN----EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 169 ~~dI~ygT~~----~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+|+.+-+|. .++.|-+|+....-...-...+.+++|||+||.|=
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~ 121 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT 121 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC
Confidence 4677777663 36667667643211111234578999999999987
No 359
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=49.20 E-value=14 Score=43.72 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=24.0
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
.|- +.-++||+|||-+.. ++++.+...+.+|+|.-+
T Consensus 242 ~GlilitGptGSGKTTtL~--a~L~~l~~~~~~iiTiED 278 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLY--AALSRLNTPERNILTVED 278 (486)
T ss_pred CCEEEEEcCCCCCHHHHHH--HHHhccCCCCCcEEEEcC
Confidence 455 789999999997642 233445545667777544
No 360
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=49.09 E-value=23 Score=31.88 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.6
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY 132 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~y 132 (816)
+.-.+-|.|||.++...+...+-.|..|+++-....
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 345678999998766655555668888888865544
No 361
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.04 E-value=24 Score=43.09 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=19.9
Q ss_pred chhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 180 FGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 180 l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
.+.|-+|+.+......-+..+.+++||||||.|
T Consensus 101 ~~vd~IReii~~a~~~p~~~~~KViIIDEad~L 133 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQARWKVYVIDECHML 133 (620)
T ss_pred CCHHHHHHHHHHHhhChhcCCceEEEEECcccc
Confidence 455666665422111123346789999999987
No 362
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=48.84 E-value=43 Score=42.49 Aligned_cols=18 Identities=33% Similarity=0.222 Sum_probs=13.7
Q ss_pred eeeecCCCCchHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa 114 (816)
+--++||.|||..+-..+
T Consensus 600 lf~Gp~GvGKT~lA~~La 617 (852)
T TIGR03345 600 LLVGPSGVGKTETALALA 617 (852)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567899999998775443
No 363
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.36 E-value=25 Score=43.19 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=15.1
Q ss_pred cCCCCCccccHHHHHHHHHH
Q psy2371 681 SLKKSDKEWDIIGLELILKK 700 (816)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~ 700 (816)
++.....+|..+.-.+|++.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~ 591 (702)
T PRK14960 572 PSQTLEGEWTLEKWEFWFRN 591 (702)
T ss_pred CcccccCcccHHHHHHHHhc
Confidence 44455678999999999874
No 364
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=48.32 E-value=19 Score=38.80 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=24.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
++ .|-|.|||-+++=.++..|..|+.|++|
T Consensus 6 v~-~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 6 IY-GKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred Ee-CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 45 5889999987777777667889999887
No 365
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=48.29 E-value=19 Score=38.48 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.4
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
.|-|.|||-+++-.++..|..|+.|+||
T Consensus 7 gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 7 GKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 5889999987766666567789988877
No 366
>PRK08006 replicative DNA helicase; Provisional
Probab=48.29 E-value=1.2e+02 Score=35.89 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=35.9
Q ss_pred CcchhhHHHHHHHHHHHHH----Hhccccchhh----hhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEE
Q psy2371 57 TLDSILPKAFSVCREASKR----VLKMRHFDVQ----LIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVH 125 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R----~lg~~p~~VQ----~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~ 125 (816)
++++++.+++..+.+.... ..| -||... +.+| +..|. |.-+.+|-|||.-++=-+...|. .|++|.
T Consensus 181 ~~~~~~~~~~~~i~~~~~~~~~~~~G-i~TG~~~LD~~~~G--l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~ 257 (471)
T PRK08006 181 NIADILDATVARIEQLFQQPHDGVTG-VNTGYDDLNKKTAG--LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVL 257 (471)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCc-ccCCCHHHHHhhcC--CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 3566777777765443212 112 133222 2222 35676 77899999999655433432233 355555
Q ss_pred EEe
Q psy2371 126 IVT 128 (816)
Q Consensus 126 VvT 128 (816)
+++
T Consensus 258 ~fS 260 (471)
T PRK08006 258 IFS 260 (471)
T ss_pred EEe
Confidence 443
No 367
>PRK08116 hypothetical protein; Validated
Probab=48.28 E-value=44 Score=36.31 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=22.3
Q ss_pred CceeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcH
Q psy2371 95 GNISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISD 131 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~ 131 (816)
|-+.-+.+|+|||..+.. +.+.| .|..|.+++.++
T Consensus 116 gl~l~G~~GtGKThLa~a--ia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAAC--IANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred eEEEECCCCCCHHHHHHH--HHHHHHHcCCeEEEEEHHH
Confidence 457788999999954442 22333 377777776544
No 368
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=48.27 E-value=25 Score=33.30 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=24.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+..++.|+|||..+..-+...+-.|+.|.++....
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 45678999998766555544455788888777554
No 369
>KOG1131|consensus
Probab=48.21 E-value=16 Score=43.04 Aligned_cols=45 Identities=38% Similarity=0.567 Sum_probs=29.7
Q ss_pred chhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc-eeeecCCCCchHHH--HHHHHHHH
Q psy2371 59 DSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVA--TLAAYLNS 118 (816)
Q Consensus 59 d~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~--~Lpa~l~a 118 (816)
|.+.||-+.-++|. +|.|. ..|+ +.||++|+|||.+. ++-+|...
T Consensus 15 ~~iYPEQ~~YM~el-KrsLD--------------akGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 15 DYIYPEQYEYMREL-KRSLD--------------AKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred cccCHHHHHHHHHH-HHhhc--------------cCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45667888777775 33321 2577 99999999999764 34444433
No 370
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.96 E-value=18 Score=44.52 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=14.9
Q ss_pred CCceeeecCCCCchHHHHHH
Q psy2371 94 YGNISEMQTGEGKTLVATLA 113 (816)
Q Consensus 94 ~G~Iaem~TGEGKTL~~~Lp 113 (816)
.+-|..+..|.|||.++.+-
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 34488899999999766543
No 371
>PRK07004 replicative DNA helicase; Provisional
Probab=47.94 E-value=1.4e+02 Score=35.23 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=36.3
Q ss_pred cchhhHHHHHHHHHHHHHH-----hccccchhhhhhhc--cccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEE
Q psy2371 58 LDSILPKAFSVCREASKRV-----LKMRHFDVQLIGGI--ALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIV 127 (816)
Q Consensus 58 ld~~l~ea~a~vrea~~R~-----lg~~p~~VQ~~~~~--~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~Vv 127 (816)
+.+++.+++..+.+...+. .| -||...-+--+ -++.|. |.-+.||.|||.-++=-+...|+ .|++|.++
T Consensus 170 ~~~~~~~~~~~i~~~~~~~~~~~~~g-i~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~f 248 (460)
T PRK07004 170 IGPLLTQVVERIDTLYHTANPSDVTG-TPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVF 248 (460)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCC-ccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEE
Confidence 4556677777665433321 11 13332221111 245676 78899999999765544432333 35555554
Q ss_pred e
Q psy2371 128 T 128 (816)
Q Consensus 128 T 128 (816)
+
T Consensus 249 S 249 (460)
T PRK07004 249 S 249 (460)
T ss_pred e
Confidence 3
No 372
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=47.87 E-value=24 Score=42.87 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCEEEECC-CcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 170 ADITYGTN-NEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 170 ~dI~ygT~-~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+|++...+ +..+.|-+|+-+..-...-...+.+++||||||.|=
T Consensus 101 ~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC
Confidence 34444332 335566656533211111233567899999999874
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.66 E-value=76 Score=34.70 Aligned_cols=84 Identities=17% Similarity=0.056 Sum_probs=47.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHH--HHHh-h-cCCC-
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHS--LKKK-S-YEAD- 171 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~--~r~~-~-y~~d- 171 (816)
..-+++|.|||..+..-+....-.|..|.+++.-.+=.. -.+++....+.+|+.+........-. .+.. . .++|
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~-~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ 157 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDY 157 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCE
Confidence 556789999998777666543445677888776544111 22344455666777765432211111 1111 1 2456
Q ss_pred EEEECCCcch
Q psy2371 172 ITYGTNNEFG 181 (816)
Q Consensus 172 I~ygT~~~l~ 181 (816)
|++=|||+..
T Consensus 158 ViIDt~Gr~~ 167 (270)
T PRK06731 158 ILIDTAGKNY 167 (270)
T ss_pred EEEECCCCCc
Confidence 6667999974
No 374
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=47.57 E-value=96 Score=35.80 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.1
Q ss_pred CCceeeecCCCCchHHHHH
Q psy2371 94 YGNISEMQTGEGKTLVATL 112 (816)
Q Consensus 94 ~G~Iaem~TGEGKTL~~~L 112 (816)
.|-+..+++|+|||+.+-.
T Consensus 180 kgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4558899999999987643
No 375
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=47.20 E-value=20 Score=40.75 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCc-eeeecCCCCchHHH-HHHHHHHHhcCCcEEEEeCc
Q psy2371 94 YGN-ISEMQTGEGKTLVA-TLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~-~Lpa~l~aL~g~~V~VvT~n 130 (816)
.|. +.-++||+|||-+. +|.-+++.-.+.+.+|+|.-
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~E 172 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYE 172 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 455 88899999998543 32222222233445667653
No 376
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=47.20 E-value=69 Score=36.62 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=33.7
Q ss_pred HhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 76 VLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
.+|+.-.|--+-|++ ..|. +.-+.+|.|||..+.--+...+-.|..|..++..
T Consensus 65 ~TGi~eLD~vLgGGi--~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 65 PTGIEELDRVLGGGL--VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred ccCCHHHHHhhcCCc--cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 344444454443443 3466 7889999999987666555445556677777654
No 377
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=47.04 E-value=21 Score=37.22 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=24.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++-.+-|.|||-+++-.++..+..|+.|++|=
T Consensus 5 v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD 36 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVALAKLGKKVLALD 36 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45678899999887766665567788887763
No 378
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.94 E-value=65 Score=36.97 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=42.4
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
....++|.|+|+.-|...++.+ ...|+++.++.|+++.++|.... .++|+++|.
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L----~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHL----AADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHH----HhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 4567999999998887666554 45699999999999987775543 569999996
No 379
>PTZ00035 Rad51 protein; Provisional
Probab=46.88 E-value=1.1e+02 Score=34.60 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=17.4
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNS 118 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~a 118 (816)
.|. ..-++.|+|||......+....
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 466 4679999999977665554333
No 380
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=46.84 E-value=44 Score=34.45 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=27.4
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
.|. ++.+++|+|||..+.--++..+..|..|..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 566 678999999998777777655556777877754
No 381
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=46.82 E-value=27 Score=42.79 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=12.7
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+.+++||||||.|-
T Consensus 118 g~~KV~IIDEah~Ls 132 (647)
T PRK07994 118 GRFKVYLIDEVHMLS 132 (647)
T ss_pred CCCEEEEEechHhCC
Confidence 468899999999764
No 382
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=46.73 E-value=21 Score=38.32 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|.-.+-|+|||.+++-.+...|..|+.|++|=-
T Consensus 108 vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 108 VVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 667889999999877777766778988888844
No 383
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=46.62 E-value=35 Score=43.88 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=44.3
Q ss_pred hccccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDA 138 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~ 138 (816)
.|+..++-|..++-.+..++ +..+..|+|||-+. -++..++ .|..|..++||---|.+-.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l--~~~~~~~e~~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML--GVAREAWEAAGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH--HHHHHHHHHcCCeEEEecCcHHHHHHHh
Confidence 46778899999987666643 89999999999653 2232332 5888999999987776544
No 384
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.41 E-value=6 Score=40.10 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=28.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAE 139 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e 139 (816)
|..+..|+|||-+++...+ .+.+ ..++..+|++|.|...
T Consensus 6 IvaG~NGsGKstv~~~~~~--~~~~--~~~~VN~D~iA~~i~p 44 (187)
T COG4185 6 IVAGPNGSGKSTVYASTLA--PLLP--GIVFVNADEIAAQISP 44 (187)
T ss_pred EEecCCCCCceeeeeccch--hhcC--CeEEECHHHHhhhcCC
Confidence 6779999999988765544 2333 5677788999887654
No 385
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=46.27 E-value=21 Score=43.82 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=42.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS 157 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~ 157 (816)
++-++||+|||..+++|.++.+ +..+.|+=|.-|+....+.+. +..|=.|-+...
T Consensus 143 lviApTgSGKgvg~VIPnLL~~--~gS~VV~DpKGE~~~~Ta~~R----~~~G~~V~~FnP 197 (670)
T PRK13850 143 LVVAPTRAGKGVGVVIPTLLTF--KGSVIALDVKGELFELTSRAR----KASGDAVFKFAP 197 (670)
T ss_pred EEEecCCCCceeeehHhHHhcC--CCCEEEEeCCchHHHHHHHHH----HhCCCEEEEecC
Confidence 7999999999999999998753 347999999999988665444 345766665443
No 386
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=46.20 E-value=21 Score=41.20 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=25.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
|+-.|-|+|||.+++-.++..|+.|+.|++|=
T Consensus 126 v~n~KGGvGKTTta~nLA~~LA~~G~rVLlID 157 (405)
T PRK13869 126 VTNFKGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCceEEEc
Confidence 56668899999877776666788999988773
No 387
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=46.20 E-value=32 Score=34.20 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=43.0
Q ss_pred EecChHHHHH-HHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh----CCCCeEEE
Q psy2371 409 IYKTMEEKYQ-AILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK----NNLPHSVL 461 (816)
Q Consensus 409 v~~t~~~K~~-ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~----~gi~~~vL 461 (816)
+|...+++.. +++..+.++...|.+|||-|.|.+..+.|-+.|-. .-|||+.-
T Consensus 6 FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~ 63 (144)
T COG2927 6 FYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLA 63 (144)
T ss_pred EEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccC
Confidence 4555555555 78899999999999999999999999999999964 35777654
No 388
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=46.09 E-value=26 Score=44.10 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.1
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+.+++||||||.|=
T Consensus 119 ~~~KV~IIDEad~lt 133 (824)
T PRK07764 119 SRYKIFIIDEAHMVT 133 (824)
T ss_pred CCceEEEEechhhcC
Confidence 568899999999985
No 389
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=45.95 E-value=33 Score=34.38 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=46.1
Q ss_pred eEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEc
Q psy2371 408 KIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN----NLPHSVLN 462 (816)
Q Consensus 408 ~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~----gi~~~vLn 462 (816)
+...+...+...+++.+.+...+|..|+|.|.+.+.++.|-+.|-.. -+||....
T Consensus 6 FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~ 64 (154)
T PRK06646 6 IYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL 64 (154)
T ss_pred EEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 34457788999999999999999999999999999999999999653 57887643
No 390
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=45.93 E-value=40 Score=44.26 Aligned_cols=55 Identities=27% Similarity=0.321 Sum_probs=39.5
Q ss_pred cCCc-eeeecCCCCchHHHHHHHHHHHhcC-------------CcEEEEeCcH----HHHHHHHHHHHHHhhhc
Q psy2371 93 HYGN-ISEMQTGEGKTLVATLAAYLNSLSG-------------QGVHIVTISD----YLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 93 ~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g-------------~~V~VvT~n~----yLA~Rd~e~~~~l~~~l 148 (816)
+.|. ++|+.-|+|||-+-+. .|+..|.| ..++|||-|+ ||-.|+.+.+..++..+
T Consensus 16 L~G~~LIEASAGTGKTyTIa~-lyLrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~rL~~~~~~~ 88 (1181)
T PRK10876 16 LQGERLIEASAGTGKTFTIAA-LYLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNIHELRIAC 88 (1181)
T ss_pred CCCCEEEEeCCCCcHHHHHHH-HHHHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 9999999999966553 34444432 2578999875 78899988887776655
No 391
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=45.82 E-value=24 Score=36.72 Aligned_cols=41 Identities=17% Similarity=-0.010 Sum_probs=28.5
Q ss_pred cCCc-eeeecCCCCchHHHHHHHHHHH-hcCCcEEEEeCcHHH
Q psy2371 93 HYGN-ISEMQTGEGKTLVATLAAYLNS-LSGQGVHIVTISDYL 133 (816)
Q Consensus 93 ~~G~-Iaem~TGEGKTL~~~Lpa~l~a-L~g~~V~VvT~n~yL 133 (816)
...+ .+-+.||+|||-+...-+.... ..|.++.|+=|+-|=
T Consensus 22 ~~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 22 FNRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEY 64 (229)
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcc
Confidence 3445 5679999999987766665333 456678888887653
No 392
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=45.81 E-value=38 Score=41.49 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
.|+ ++-+.||+|||....+.+....-.|.+|.++=|..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkg 218 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKG 218 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 466 89999999999888877765555688899988864
No 393
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=45.64 E-value=27 Score=43.56 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=12.5
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+++++||||||.|-
T Consensus 118 gr~KVIIIDEah~LT 132 (830)
T PRK07003 118 ARFKVYMIDEVHMLT 132 (830)
T ss_pred CCceEEEEeChhhCC
Confidence 467899999999764
No 394
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=45.47 E-value=22 Score=38.16 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=27.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++.|+|||.+++-.+...+-.|+.|++|...
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D 37 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTD 37 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCC
Confidence 4457899999988777777677889999998754
No 395
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=45.47 E-value=13 Score=45.41 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=41.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
++-++||+|||..+++|.++.+ +..+.|.=|--|+....+.+.. +..|=.|-+..
T Consensus 179 lviapTgSGKgvg~ViPnLL~~--~~S~VV~D~KGE~~~~Tag~R~---~~~G~~V~~fd 233 (636)
T PRK13880 179 LTYAPTRSGKGVGLVVPTLLSW--GHSSVITDLKGELWALTAGWRQ---KHAKNKVLRFE 233 (636)
T ss_pred EEEecCCCCCceEEEccchhhC--CCCEEEEeCcHHHHHHHHHHHH---HhCCCeEEEEe
Confidence 8999999999999999999753 6789999999999865554432 23455665443
No 396
>PRK13531 regulatory ATPase RavA; Provisional
Probab=45.08 E-value=21 Score=42.27 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAY 115 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~ 115 (816)
.++-++++....+=-+..-|......++..|+ +.++++|+|||+.+-..+.
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHH
Confidence 34444444444333344556666666667777 8999999999988754443
No 397
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=44.99 E-value=43 Score=37.50 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=21.3
Q ss_pred cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 179 EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 179 ~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+++.|-+|+-...-...-...+.+++|||+||.|-
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~ 126 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN 126 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC
Confidence 35567666543211111223467999999999986
No 398
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=44.83 E-value=39 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=31.9
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
..++||+++|.+-..+...+..|++.|+.+.+|+|..
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~ 85 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGY 85 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCH
Confidence 4568999999998889999999999999888888763
No 399
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=44.77 E-value=33 Score=40.85 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=13.8
Q ss_pred ceeeecCCCCchHHHHHH
Q psy2371 96 NISEMQTGEGKTLVATLA 113 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~Lp 113 (816)
-|..++.|+|||-++-+-
T Consensus 46 ~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 46 YLLTGIRGVGKTTSARII 63 (507)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 378899999999765443
No 400
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=44.58 E-value=21 Score=36.53 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=18.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
+..+..|+|||+-++.-.++.+|. +|-.|+|.
T Consensus 4 ~~~G~pGsGKS~~av~~~i~~~l~-~gr~V~tn 35 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSYVIIPALK-KGRPVYTN 35 (193)
T ss_dssp EEE--TTSSHHHHHHHHHHH-GGG-S---EEE-
T ss_pred EEEcCCCCcHhHHHHHHHHHHHHh-CCCEEEEc
Confidence 567889999998777665555665 46667773
No 401
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=44.12 E-value=77 Score=36.40 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=43.3
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.|+|+.-|.+.++.+. ..|+++..+.|+++..+|..+. ..+|+++|.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd 303 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLR----KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHH----hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 34579999999998888777664 4789999999999988776543 468999985
No 402
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=44.07 E-value=1.2e+02 Score=38.16 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=12.8
Q ss_pred eeeecCCCCchHHHHH
Q psy2371 97 ISEMQTGEGKTLVATL 112 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L 112 (816)
+.-+++|+|||..+-.
T Consensus 351 ll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 351 CLVGPPGVGKTSLGKS 366 (775)
T ss_pred EEECCCCCCHHHHHHH
Confidence 6789999999965543
No 403
>PRK07773 replicative DNA helicase; Validated
Probab=43.82 E-value=1.4e+02 Score=38.01 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=70.6
Q ss_pred CcchhhHHHHHHHHHHHHHHhccccchhhhhhh--c--cccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeC
Q psy2371 57 TLDSILPKAFSVCREASKRVLKMRHFDVQLIGG--I--ALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTI 129 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~--~--~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~ 129 (816)
++.+++.+++..+.+...+.-+....++...+. + -+..|. |.-+.+|.|||..++=-+...|.. |.+|.+++-
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSl 254 (886)
T PRK07773 175 ALEDLLQPTFDEIDAIASSGGLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSL 254 (886)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 356666676665544322221122222221111 1 134666 788999999997655555433444 677877763
Q ss_pred ---cHHHHHHHHHHHHHHhhhcCCeEEEe-cCCCCHHHHH-------hhcCCCEEEECCCcchhhhhhhhhccCCCcccc
Q psy2371 130 ---SDYLAKRDAEWMSVLYNWLGLSIGVN-SSEISHSLKK-------KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQ 198 (816)
Q Consensus 130 ---n~yLA~Rd~e~~~~l~~~lglsv~~i-~~~~~~~~r~-------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~ 198 (816)
...|+.|-.. ...+++..-+ .+.++..+.. ......+.+-....+..+.++..+..- ...
T Consensus 255 Ems~~ql~~R~~s------~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~---~~~ 325 (886)
T PRK07773 255 EMSKEQLVMRLLS------AEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRL---RQE 325 (886)
T ss_pred CCCHHHHHHHHHH------HhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHh
Confidence 3344443221 1223332222 2233432211 111334555444456666666554211 112
Q ss_pred ccceEEEecchhh
Q psy2371 199 RKLNFVILDEIDS 211 (816)
Q Consensus 199 r~~~~~IvDEaDs 211 (816)
.+++++|||=..-
T Consensus 326 ~~~~lvvIDyLql 338 (886)
T PRK07773 326 ANLGLIVVDYLQL 338 (886)
T ss_pred cCCCEEEEcchhh
Confidence 3688999986653
No 404
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.80 E-value=37 Score=38.42 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=12.8
Q ss_pred eeeecCCCCchHHHHH
Q psy2371 97 ISEMQTGEGKTLVATL 112 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L 112 (816)
+..++.|.|||..+-.
T Consensus 42 L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 42 LLSGTRGVGKTTIARL 57 (363)
T ss_pred EEecCCCCCHHHHHHH
Confidence 7788999999966543
No 405
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.77 E-value=27 Score=44.19 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=12.9
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+..++||||||.|-
T Consensus 118 gk~KViIIDEAh~LT 132 (944)
T PRK14949 118 GRFKVYLIDEVHMLS 132 (944)
T ss_pred CCcEEEEEechHhcC
Confidence 467899999999885
No 406
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=43.76 E-value=1.7e+02 Score=34.37 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhHHHHhcCChHHHHH----HHHHHHHhc--ccCCCcchhhHHHHHHHHHHHHHH--hcc-ccc--hhh
Q psy2371 17 KKYQKIVQKINELESVMQKLSDEELQN----QTSKLKQSI--HSGETLDSILPKAFSVCREASKRV--LKM-RHF--DVQ 85 (816)
Q Consensus 17 ~~~~~~~~~i~~~~~~~~~lsd~~l~~----~~~~~~~~~--~~g~~ld~~l~ea~a~vrea~~R~--lg~-~p~--~VQ 85 (816)
+++..+...|....-+-..-.++++.+ +.-++-+.- ....++++.+.+++..+.+...+. .|+ .+| =-+
T Consensus 109 R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~Gi~tgf~~LD~ 188 (435)
T COG0305 109 RELIEAGNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETMDEIEARFENGGLIGVPTGFTDLDE 188 (435)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCCcccccCchhhHH
Confidence 344455555555544444334433322 222222221 112456778888888886665543 333 111 123
Q ss_pred hhhhccccCCc--eeeecCCCCchHHHH
Q psy2371 86 LIGGIALHYGN--ISEMQTGEGKTLVAT 111 (816)
Q Consensus 86 ~~~~~~L~~G~--Iaem~TGEGKTL~~~ 111 (816)
+.+| ++.|. |.-|.+|-|||.-++
T Consensus 189 ~t~G--~~~~dLii~AaRP~mGKTafal 214 (435)
T COG0305 189 ITSG--FRPGDLIIVAARPGMGKTALAL 214 (435)
T ss_pred HhcC--CccCCEEEEccCCCCChHHHHH
Confidence 3444 45676 788999999995443
No 407
>KOG1001|consensus
Probab=43.70 E-value=45 Score=41.09 Aligned_cols=106 Identities=23% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCceeeecCCCCchHHHHHHHHHHHh---------cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHH
Q psy2371 94 YGNISEMQTGEGKTLVATLAAYLNSL---------SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLK 164 (816)
Q Consensus 94 ~G~Iaem~TGEGKTL~~~Lpa~l~aL---------~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r 164 (816)
.|-|..=.=|=|||....-..+..-. .+++-+||||..-|-+.-.+. ....+.-.+++.+..| -..+.
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~el-ek~~~~~~l~v~v~~g--r~kd~ 229 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTEEDKLSIYVYHG--RTKDK 229 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHH-hccCCccceEEEEecc--ccccc
Confidence 45676667799999865444443222 456789999998887765555 6666666788877776 11122
Q ss_pred HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 165 KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 165 ~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+--..|||+.|++=+++ ..+..-....+|+|||+.+=
T Consensus 230 ~el~~~dVVltTy~il~~-----------~~l~~i~w~Riildea~~ik 267 (674)
T KOG1001|consen 230 SELNSYDVVLTTYDILKN-----------SPLVKIKWLRIVLDEAHTIK 267 (674)
T ss_pred chhcCCceEEeeHHHhhc-----------ccccceeEEEEEeccccccC
Confidence 222345799999976632 12233456778999999874
No 408
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=43.60 E-value=24 Score=40.20 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=24.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++-.|-|+|||.+++-.++..+..|+.|++|=
T Consensus 109 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID 140 (387)
T TIGR03453 109 VTNFKGGSGKTTTAAHLAQYLALRGYRVLAID 140 (387)
T ss_pred EEccCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 56678899999877666665677898888774
No 409
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=43.48 E-value=27 Score=42.79 Aligned_cols=56 Identities=18% Similarity=0.055 Sum_probs=44.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSE 158 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~ 158 (816)
++-+.||+|||..+++|.+++ .+..+.|+=|.-|++.-.+.+- +.+|=.|.++...
T Consensus 228 Lv~ApTgsGKt~g~VIPnLL~--~~gS~VV~DpKgEl~~~Ta~~R----~~~G~~V~vfdP~ 283 (641)
T PRK13822 228 LVFAGSGGFKTTSVVVPTALK--WGGPLVVLDPSTEVAPMVSEHR----RDAGREVIVLDPT 283 (641)
T ss_pred EEEeCCCCCccceEehhhhhc--CCCCEEEEeCcHHHHHHHHHHH----HHCCCeEEEEeCC
Confidence 899999999999999998753 2557888889999988666544 4567778776553
No 410
>CHL00175 minD septum-site determining protein; Validated
Probab=43.42 E-value=25 Score=37.85 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=23.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|+-.+.|.|||.+++-.++..+..|+.|++|
T Consensus 20 v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 20 ITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 6778999999987666665456678878777
No 411
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=43.40 E-value=44 Score=35.32 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=27.3
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+..|. +..+.+|+|||..+.--++-.+-.|..+..++...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34566 78899999999875544443334677887777543
No 412
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=43.26 E-value=29 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=24.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
++-.+-|.|||-+++-.++..+..|+.|.+|
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4556789999987776666667788888888
No 413
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=43.24 E-value=40 Score=29.01 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=33.2
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
..+.+|+|+|.+-..+..++..|+..|++ +.+|+|...
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 46789999999999999999999999998 788888743
No 414
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=42.60 E-value=26 Score=38.46 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=24.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|. +|-|.|||-+++=.++..+..|+.|++|
T Consensus 9 i~-~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 9 FY-GKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred EE-CCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45 8999999987666666567789999888
No 415
>PRK06321 replicative DNA helicase; Provisional
Probab=42.50 E-value=92 Score=36.82 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=58.0
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHH-h-cCCcEEEEe---CcHHHHHHHHHHHHHHhhhcCCeEEEe-cCCCCHHH
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNS-L-SGQGVHIVT---ISDYLAKRDAEWMSVLYNWLGLSIGVN-SSEISHSL 163 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~a-L-~g~~V~VvT---~n~yLA~Rd~e~~~~l~~~lglsv~~i-~~~~~~~~ 163 (816)
+..|. |.-+.+|.|||.-++= ++.++ . .|++|.+++ +..+|+.|... ...++...-+ .+.++.++
T Consensus 223 l~~G~LiiiaarPgmGKTafal~-ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla------~~s~v~~~~i~~~~l~~~e 295 (472)
T PRK06321 223 FSPSNLMILAARPAMGKTALALN-IAENFCFQNRLPVGIFSLEMTVDQLIHRIIC------SRSEVESKKISVGDLSGRD 295 (472)
T ss_pred CCCCcEEEEEeCCCCChHHHHHH-HHHHHHHhcCCeEEEEeccCCHHHHHHHHHH------hhcCCCHHHhhcCCCCHHH
Confidence 45676 7789999999965444 44454 3 578888876 34555554322 2223433322 23344332
Q ss_pred HH-------hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh
Q psy2371 164 KK-------KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 164 r~-------~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs 211 (816)
.. ......+.+-....+..+.++..+.. -....+++++|||=..-
T Consensus 296 ~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~---~~~~~~~~lvvIDyLql 347 (472)
T PRK06321 296 FQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARR---MKESYDIQFLIIDYLQL 347 (472)
T ss_pred HHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHH---HHHhcCCCEEEEcchHH
Confidence 21 11123455543334445556655421 11224688999996643
No 416
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=42.41 E-value=1.6e+02 Score=33.18 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=77.4
Q ss_pred HHHHHHHHhcccC--CCcchhh-----HHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHH
Q psy2371 43 NQTSKLKQSIHSG--ETLDSIL-----PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLA 113 (816)
Q Consensus 43 ~~~~~~~~~~~~g--~~ld~~l-----~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lp 113 (816)
+....+|+|++.| .+|.|.| |+..+...++..+.-|-.+...++...++=.-|. =.-.-|..|..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~ylgl~~~~~~~~~~~~~~~~~~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~-- 86 (346)
T TIGR03576 9 KALEIIREKISRGGRDSLYDLTGLAGGFKIDEEDLELLETYVGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILA-- 86 (346)
T ss_pred HHHHHHHHHHhccCCccccccccCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHH--
Confidence 3455678888888 6676653 6777777777777656666666666655443332 122234445544333
Q ss_pred HHHHHhcCCcEEEEeC-cHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhh-----hhh
Q psy2371 114 AYLNSLSGQGVHIVTI-SDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDY-----LRD 187 (816)
Q Consensus 114 a~l~aL~g~~V~VvT~-n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDy-----LrD 187 (816)
++.++.+.+-+|+++ .++++- ..+....+..|.++.. .. +.+.-...-+..++|.|++..--|. |..
T Consensus 87 -~~~al~~~gd~Vli~~~d~p~~---~s~~~~~~l~ga~~~~-~~--~l~~l~~~~~~~lIiitg~s~~G~v~~~~~L~~ 159 (346)
T TIGR03576 87 -TILALEPPGRKVVHYLPEKPAH---PSIPRSCKLAGAEYFE-SD--ELSELKKIDGTSLVVITGSTMDLKVVSEEDLKR 159 (346)
T ss_pred -HHHHhCCCCCEEEECCCCCCCc---hhHHHHHHHcCCEEec-cC--CHHHHhhCcCceEEEEECCCCCCcccCHHHHHH
Confidence 334566766556543 223322 2233334445665421 11 2221111113456676765321111 111
Q ss_pred hhccCCCccccccceEEEecchhhhh
Q psy2371 188 NMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 188 ~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
-. .+..+.--++|||||+...
T Consensus 160 i~-----~la~~~~~~livDEAy~~~ 180 (346)
T TIGR03576 160 VI-----KQAKSKEAIVLVDDASGAR 180 (346)
T ss_pred HH-----HHHHHcCCEEEEECCcccc
Confidence 11 1111223478999999764
No 417
>PRK08939 primosomal protein DnaI; Reviewed
Probab=42.39 E-value=31 Score=38.33 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=24.8
Q ss_pred CceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 95 GNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
|-+.-+++|.|||-.+...+-..+-.|..|.+++..+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE 194 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH
Confidence 4478899999999554433332345677888777653
No 418
>PHA02518 ParA-like protein; Provisional
Probab=42.06 E-value=29 Score=35.16 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=23.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
++--|-|.|||-+++--++..+..|+.|+++--
T Consensus 5 v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~ 37 (211)
T PHA02518 5 VLNQKGGAGKTTVATNLASWLHADGHKVLLVDL 37 (211)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 344577999998666666556678988887743
No 419
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=42.00 E-value=53 Score=33.57 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=46.3
Q ss_pred CcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCC
Q psy2371 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLP 457 (816)
Q Consensus 405 ~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~ 457 (816)
|--.+|.+.++.+..++..+.+-.+.|.+||+.++.....+.+.+.|++.|+.
T Consensus 21 H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d 73 (191)
T PF14417_consen 21 HICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGPD 73 (191)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCCc
Confidence 34468999999999999999998899999999998788888999999877664
No 420
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=41.90 E-value=46 Score=40.73 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHH--HHHHHHHHHHHHhhhcCCe
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY--LAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~y--LA~Rd~e~~~~l~~~lgls 151 (816)
.|+ ++-+.||+|||..+.+.+....-.|.+|.|+=|-.. |+. .+....+..|=.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~----~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKR----RMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHH----HHHHHHHHhCCC
Confidence 466 889999999997765544433345888888888654 443 333444444543
No 421
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=41.72 E-value=18 Score=39.65 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=29.4
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
.|..+-.|||++++-.=|-.+..+..+ ...+ +-.++||||||.+- |-
T Consensus 205 ~r~~~~~Adivi~ny~yll~~~~r~~~-----~~~l-~~~~lIiDEAHnL~-d~ 251 (289)
T smart00488 205 SRKAIEFANVVVLPYQYLLDPKIRQAL-----SIEL-KDSIVIFDEAHNLD-NV 251 (289)
T ss_pred HHHHhhcCCEEEECHHHHhcHHHHHHh-----cccc-cccEEEEeCccChH-HH
Confidence 456667899999876544222223222 1122 47899999999976 43
No 422
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=41.72 E-value=18 Score=39.65 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=29.4
Q ss_pred HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 163 ~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
.|..+-.|||++++-.=|-.+..+..+ ...+ +-.++||||||.+- |-
T Consensus 205 ~r~~~~~Adivi~ny~yll~~~~r~~~-----~~~l-~~~~lIiDEAHnL~-d~ 251 (289)
T smart00489 205 SRKAIEFANVVVLPYQYLLDPKIRQAL-----SIEL-KDSIVIFDEAHNLD-NV 251 (289)
T ss_pred HHHHhhcCCEEEECHHHHhcHHHHHHh-----cccc-cccEEEEeCccChH-HH
Confidence 456667899999876544222223222 1122 47899999999976 43
No 423
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=41.65 E-value=73 Score=28.57 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=32.3
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCchH
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQHK 467 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~~ 467 (816)
.++||+|+|++-..|...+..|.+.|++ +.+|.|....
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 5789999999998999999999999996 6678887443
No 424
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=41.48 E-value=1.2e+02 Score=42.29 Aligned_cols=134 Identities=17% Similarity=0.063 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc----eeeecCCCCchHHH--
Q psy2371 37 SDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN----ISEMQTGEGKTLVA-- 110 (816)
Q Consensus 37 sd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~----Iaem~TGEGKTL~~-- 110 (816)
|.+.|.....-++.-.........+.+..-+.-+- ..+...++-|..|+-.++.+. ++++.-|+|||-+.
T Consensus 980 t~~~l~~E~~il~~~~~g~~~~~~~~~~~~~~~~l----~~~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~ 1055 (1960)
T TIGR02760 980 TRAALRTETSILLHILPGKETVTPLATRAQVFLNL----ELLERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLES 1055 (1960)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHh----hccCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHH
Q ss_pred --HHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhh
Q psy2371 111 --TLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDN 188 (816)
Q Consensus 111 --~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~ 188 (816)
-...-...-.|..|+.++||--=|.+-.+ .|+... |-..| ..+
T Consensus 1056 ~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~--------~g~~a~----------------------Ti~s~-----l~~ 1100 (1960)
T TIGR02760 1056 RYKPVLQAFESEQLQVIGLAPTHEAVGELKS--------AGVQAQ----------------------TLDSF-----LTD 1100 (1960)
T ss_pred HHHHHHHHHHhcCCeEEEEeChHHHHHHHHh--------cCCchH----------------------hHHHH-----hcC
Q ss_pred hccCCCccccccceEEEecch
Q psy2371 189 MVFNSNDRVQRKLNFVILDEI 209 (816)
Q Consensus 189 ~~~~~~~~~~r~~~~~IvDEa 209 (816)
...........+..++||||+
T Consensus 1101 ~~~~~~~~~~~~~~v~ivDEa 1121 (1960)
T TIGR02760 1101 ISLYRNSGGDFRNTLFILDES 1121 (1960)
T ss_pred cccccccCCCCcccEEEEEcc
No 425
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=41.37 E-value=34 Score=31.51 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=22.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT 128 (816)
++..+-|.|||.++.-.+...+.. |+.|+++=
T Consensus 4 ~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d 36 (106)
T cd03111 4 FIGAKGGVGATTLAANLAVALAKEAGRRVLLVD 36 (106)
T ss_pred EECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 456789999998555444434555 88888883
No 426
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=40.87 E-value=31 Score=37.17 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
+...+-|.|||.+++..+...+..|+.|+++
T Consensus 7 i~~~KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 7 VLQGKGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 5678999999997666665556788888887
No 427
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.82 E-value=31 Score=37.22 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=23.6
Q ss_pred CceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 95 GNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
|-+.-+++|.|||-.++.-+.-.+..|..|.++|.+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 338889999999954443333222557778777764
No 428
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=40.78 E-value=30 Score=36.75 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=22.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
++ .|=|.|||-+++-.++..+..|+.|++|
T Consensus 6 v~-~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 6 IY-GKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred EE-eCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45 4889999987666666566789888877
No 429
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=40.65 E-value=1.3e+02 Score=33.57 Aligned_cols=49 Identities=12% Similarity=-0.046 Sum_probs=35.5
Q ss_pred HHHHHHHhhccCCCcEEEEE-cccHhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 419 AILMDIKNCYIKEQPVLVGT-TSIENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 419 ai~~~i~~~~~~grpVLVft-~si~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
..++++.........|+|+| ++-..|...+..|...|+.+.+|+|....
T Consensus 62 ~~i~~~~~~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a 111 (311)
T TIGR03167 62 AHVEQWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA 111 (311)
T ss_pred HHHHHHHhhcCCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH
Confidence 33444433333344599999 47788999999999999999999987543
No 430
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.60 E-value=24 Score=40.44 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.1
Q ss_pred cccceEEEecchhhhh
Q psy2371 198 QRKLNFVILDEIDSIL 213 (816)
Q Consensus 198 ~r~~~~~IvDEaDs~L 213 (816)
..+.+++||||||.|-
T Consensus 125 ~~~~kvvIIdea~~l~ 140 (397)
T PRK14955 125 KGRYRVYIIDEVHMLS 140 (397)
T ss_pred cCCeEEEEEeChhhCC
Confidence 3467899999999875
No 431
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=40.50 E-value=83 Score=37.95 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 115 YLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 115 ~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
++....|..++|.|+|+..+...++.+. ..|++++...++++.++|.... ..+|+++|.
T Consensus 218 ~l~~~~~~~~IIf~~sr~~~e~la~~L~----~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~ 282 (591)
T TIGR01389 218 YLKKHRGQSGIIYASSRKKVEELAERLE----SQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN 282 (591)
T ss_pred HHHhcCCCCEEEEECcHHHHHHHHHHHH----hCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 3344457789999999998887777654 4699999999999988776542 468999997
No 432
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.27 E-value=52 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=13.9
Q ss_pred ceeeecCCCCchHHHHHH
Q psy2371 96 NISEMQTGEGKTLVATLA 113 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~Lp 113 (816)
-|..++.|.|||.++-+-
T Consensus 41 ~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 41 YLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 378889999999765543
No 433
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=40.20 E-value=27 Score=40.00 Aligned_cols=31 Identities=29% Similarity=0.213 Sum_probs=25.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|+-.|-|.|||-+++-.++..|..|+.|++|
T Consensus 111 i~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 111 VAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred EECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 6678899999987666666668899999887
No 434
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=39.84 E-value=24 Score=42.46 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=55.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHh--cCCcEEEEeCcHHHHHHHHH-HHHHHhhhcC-CeEEEecC----CCCHHHHHhhc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL--SGQGVHIVTISDYLAKRDAE-WMSVLYNWLG-LSIGVNSS----EISHSLKKKSY 168 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL--~g~~V~VvT~n~yLA~Rd~e-~~~~l~~~lg-lsv~~i~~----~~~~~~r~~~y 168 (816)
.....+-.|||.+..- ++...+ .-..++++-||+.+|++-.+ .+.|+++..- |+ ..+.. ........+.+
T Consensus 37 v~~k~aQ~GkT~~~~n-~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~-~~~~~~~~~~~~~t~~~k~f 114 (557)
T PF05876_consen 37 VVMKSAQVGKTELLLN-WIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR-RKLSPSKSRDSGNTILYKRF 114 (557)
T ss_pred EEEEcchhhHhHHHHh-hceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH-HHhCchhhcccCCchhheec
Confidence 4556677899984332 221222 22469999999999998874 4777766431 21 11211 00000111111
Q ss_pred -CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 169 -EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 169 -~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+..+..+.. .++..+..++.+++++||+|..-
T Consensus 115 ~gg~l~~~ga-------------~S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 115 PGGFLYLVGA-------------NSPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred CCCEEEEEeC-------------CCCcccccCCcCEEEEechhhcc
Confidence 122222211 12345556789999999999984
No 435
>PRK06835 DNA replication protein DnaC; Validated
Probab=39.84 E-value=36 Score=38.23 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=22.9
Q ss_pred CceeeecCCCCchH-HHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 95 GNISEMQTGEGKTL-VATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 95 G~Iaem~TGEGKTL-~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
|-+.-++||+|||- +.++.-.+ .-.|..|..+|..+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t~~~ 221 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRTADE 221 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEEHHH
Confidence 33888999999995 33333322 23577787777644
No 436
>KOG0330|consensus
Probab=39.81 E-value=50 Score=37.94 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=47.0
Q ss_pred HHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECC
Q psy2371 115 YLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS------YEADITYGTN 177 (816)
Q Consensus 115 ~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~ 177 (816)
+++-+.|..++|.|.|-- ...|+.-+...+|+++..+.|.|+...|..+ -.|+|.+||-
T Consensus 294 ll~e~~g~s~iVF~~t~~----tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD 358 (476)
T KOG0330|consen 294 LLNELAGNSVIVFCNTCN----TTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD 358 (476)
T ss_pred HHHhhcCCcEEEEEeccc----hHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecc
Confidence 346678999999998854 4557788899999999999999987765433 3689999986
No 437
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.72 E-value=59 Score=40.44 Aligned_cols=74 Identities=20% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC-CCCeEEEcCCchHHH--HHHHHHcCCCccEEEecCcc
Q psy2371 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN-NLPHSVLNAKQHKLE--AQIIAQAGHPKMITIATNMA 489 (816)
Q Consensus 416 K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~-gi~~~vLnak~~~rE--a~ii~~Ag~~g~VtIATnmA 489 (816)
|-+..++.|.+..++|+.|||-++.+...-.+.+.|+.+ |.+..++|++-...| ..-.+-..+..+|.|-|--|
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA 306 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA 306 (730)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh
Confidence 333445556666678999999999999999998888864 899999999954443 33333233456888877543
No 438
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=39.67 E-value=34 Score=38.24 Aligned_cols=27 Identities=0% Similarity=0.091 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHhhHHHHhcCChHHHH
Q psy2371 16 LKKYQKIVQKINELESVMQKLSDEELQ 42 (816)
Q Consensus 16 ~~~~~~~~~~i~~~~~~~~~lsd~~l~ 42 (816)
+..++.+-+++..+...+..++-++..
T Consensus 6 ~~~~~e~~~r~~~w~~~~~~m~~a~~l 32 (369)
T PF02456_consen 6 YEELEEFWDRLQTWKQALDDMPMAIGL 32 (369)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 445566667777777777777555443
No 439
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.59 E-value=31 Score=41.83 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.3
Q ss_pred cccceEEEecchhhhh
Q psy2371 198 QRKLNFVILDEIDSIL 213 (816)
Q Consensus 198 ~r~~~~~IvDEaDs~L 213 (816)
..+.+++||||||.|-
T Consensus 116 ~~~~KVvIIDEah~Lt 131 (584)
T PRK14952 116 QSRYRIFIVDEAHMVT 131 (584)
T ss_pred cCCceEEEEECCCcCC
Confidence 3568899999999875
No 440
>PRK10037 cell division protein; Provisional
Probab=39.47 E-value=31 Score=36.59 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=24.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++--|=|.|||.+++-.++..+..|+.|++|=
T Consensus 6 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 6 LQGVRGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred EecCCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34457799999866666665678899999883
No 441
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=39.34 E-value=1.5e+02 Score=33.68 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=38.5
Q ss_pred HHhcCChHHHHHHHHHHHHhcccCC-CcchhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchH
Q psy2371 32 VMQKLSDEELQNQTSKLKQSIHSGE-TLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTL 108 (816)
Q Consensus 32 ~~~~lsd~~l~~~~~~~~~~~~~g~-~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL 108 (816)
++..+|.++.......-++.+..|- +-.+++. --++..+-.+|....|--+-||+ ..|. ..-+..|+|||.
T Consensus 68 ~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~----~~~~~~~isTG~~~LD~lLgGGi--~~G~ItEI~G~~GsGKTq 141 (344)
T PLN03187 68 GIKGLSEAKVDKICEAAEKLLNQGFITGSDALL----KRKSVVRITTGSQALDELLGGGI--ETRCITEAFGEFRSGKTQ 141 (344)
T ss_pred HhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHh----hhccCceecCCcHhHHhhcCCCC--CCCeEEEEecCCCCChhH
Confidence 3466676666665555555443321 1111111 00111222345555554444443 2566 456899999997
Q ss_pred HHHHHHH
Q psy2371 109 VATLAAY 115 (816)
Q Consensus 109 ~~~Lpa~ 115 (816)
...-.++
T Consensus 142 l~lqlav 148 (344)
T PLN03187 142 LAHTLCV 148 (344)
T ss_pred HHHHHHH
Confidence 5544443
No 442
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.22 E-value=28 Score=42.52 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=15.3
Q ss_pred ceeeecCCCCchHHHHH-HHHHH
Q psy2371 96 NISEMQTGEGKTLVATL-AAYLN 117 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~L-pa~l~ 117 (816)
-|-.++.|.|||.++.+ +-.++
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 37889999999966543 33433
No 443
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=38.92 E-value=31 Score=39.58 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=25.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++--|-|.|||-+++-.++..++.|+.|++|=
T Consensus 111 v~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 111 VMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56678899999877776666688899888773
No 444
>PRK13236 nitrogenase reductase; Reviewed
Probab=38.89 E-value=30 Score=38.01 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=24.1
Q ss_pred eecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 99 EMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 99 em~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
-+|-|.|||.+++-.++..+..|+.|+++
T Consensus 12 ~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 12 YGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred ECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 46889999998777777677789999888
No 445
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=38.78 E-value=86 Score=38.11 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=44.7
Q ss_pred HHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECCC
Q psy2371 117 NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTNN 178 (816)
Q Consensus 117 ~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~~ 178 (816)
....|+.++|.|+|+.-+.+.++.+ ...|++++...+++++++|.... ..+|+++|..
T Consensus 232 ~~~~~~~~IIFc~tr~~~e~la~~L----~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 232 QEQRGKSGIIYCNSRAKVEDTAARL----QSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHH----HhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 3456778999999988777655544 45699999999999988776543 4689999983
No 446
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=38.74 E-value=1.8e+02 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=39.2
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.|++..-+.+.++.+.. .+..+.++.+++++.+|.... ...|+++|.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~ 86 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD 86 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 367899999998877666655543 688899999998876654432 346888876
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=38.72 E-value=33 Score=35.29 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=12.6
Q ss_pred Cc-eeeecCCCCchHHH
Q psy2371 95 GN-ISEMQTGEGKTLVA 110 (816)
Q Consensus 95 G~-Iaem~TGEGKTL~~ 110 (816)
|- +.-++||+|||-+.
T Consensus 2 GlilI~GptGSGKTTll 18 (198)
T cd01131 2 GLVLVTGPTGSGKSTTL 18 (198)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 44 67789999999764
No 448
>PTZ00424 helicase 45; Provisional
Probab=38.45 E-value=96 Score=34.95 Aligned_cols=59 Identities=7% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 115 YLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 115 ~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
+...+...+++|.|+|+.-|...++.+ ...|+.+.++.|+++..+|.... ..+|+++|.
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l----~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKM----HERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHH----HHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 334456678999999988776655544 45689999999999988776542 468999996
No 449
>PRK10818 cell division inhibitor MinD; Provisional
Probab=38.24 E-value=35 Score=36.44 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=25.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
|+-.+-|.|||-+++-.++..+..|+.|++|=
T Consensus 7 v~s~KGGvGKTt~a~nlA~~la~~g~~vllvD 38 (270)
T PRK10818 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (270)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56678899999888877776677788777664
No 450
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=38.13 E-value=43 Score=31.77 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=17.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|..+++|.|||..+-.-+.. .+..++.+..
T Consensus 3 lL~G~~G~GKt~l~~~la~~---~~~~~~~i~~ 32 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAAL---LGRPVIRINC 32 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHH---HTCEEEEEE-
T ss_pred EEECCCCCCHHHHHHHHHHH---hhcceEEEEe
Confidence 56889999999654433321 1444544443
No 451
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=37.92 E-value=34 Score=36.74 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=23.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHh-cCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~Vv 127 (816)
|+ .|-|.|||-+++=.++..|. .|+.|++|
T Consensus 7 v~-~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 7 IY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred EE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 56 69999999876665655565 59999887
No 452
>PHA02535 P terminase ATPase subunit; Provisional
Probab=37.78 E-value=1.6e+02 Score=35.81 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=36.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
++.-.==.|||-.|+.=++..|+ +|..+.++++|+.-|..-.+-+..+.+
T Consensus 157 ~ilKSRQiG~T~~fA~EA~~dal~~G~nqiflSas~~QA~~f~~yi~~~a~ 207 (581)
T PHA02535 157 NILKSRQIGATYYFAREALEDALLTGRNQIFLSASKAQAHVFKQYIIAFAR 207 (581)
T ss_pred eEeeecccchHHHHHHHHHHHHHhcCCceEEECCCHHHHHHHHHHHHHHHH
Confidence 33333345999999988888776 588899999999999865555555534
No 453
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=37.74 E-value=29 Score=42.35 Aligned_cols=55 Identities=20% Similarity=0.044 Sum_probs=41.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcC-CeEEEecC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLG-LSIGVNSS 157 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg-lsv~~i~~ 157 (816)
++-++||+|||..+++|.++.+ +..+.|+=|.-|++.-.+.+-. ..| =+|.++..
T Consensus 215 lv~ApTgsGKgvg~VIPnLL~~--~gS~VV~DpKgE~~~~Ta~~R~----~~Gg~~V~vfdP 270 (623)
T TIGR02767 215 IFFAGSGGFKTTSVVVPTALKY--GGPLVCLDPSTEVAPMVCEHRR----QAGNRKVIVLDP 270 (623)
T ss_pred EEEeCCCCCccceeehhhhhcC--CCCEEEEEChHHHHHHHHHHHH----HcCCCcEEEEeC
Confidence 8999999999999999987542 5679999999999876665443 333 56665544
No 454
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=37.60 E-value=34 Score=36.83 Aligned_cols=47 Identities=32% Similarity=0.217 Sum_probs=30.6
Q ss_pred eeecCCCCchHHHHH-HHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 98 SEMQTGEGKTLVATL-AAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 98 aem~TGEGKTL~~~L-pa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
+.++-|+|||.++++ ...+..-.|..|++|=.- .=-.+...||+..-
T Consensus 5 I~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD---------pd~nL~~~LGve~~ 52 (255)
T COG3640 5 ITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD---------PDSNLPEALGVEEP 52 (255)
T ss_pred EecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC---------CCCChHHhcCCCCC
Confidence 457889999988887 555444445778877432 11246667888773
No 455
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=37.47 E-value=28 Score=39.01 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=22.1
Q ss_pred eeeecCCCCchHHH-HHHHHHH-HhcCCcEEEEeCcHHHH
Q psy2371 97 ISEMQTGEGKTLVA-TLAAYLN-SLSGQGVHIVTISDYLA 134 (816)
Q Consensus 97 Iaem~TGEGKTL~~-~Lpa~l~-aL~g~~V~VvT~n~yLA 134 (816)
|.-+.||+|||-.. +|..+.. ...+..+.++--+.||.
T Consensus 148 lI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 148 VISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 89999999999543 2222211 12344566666666663
No 456
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=37.20 E-value=1.1e+02 Score=35.53 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=43.1
Q ss_pred HhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 118 SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 118 aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
...+..++|.|+|+.-|...++.+ ...|+.+..+.|++++.+|.... ..+|+++|.
T Consensus 239 ~~~~~~~lVF~~t~~~~~~l~~~L----~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd 300 (460)
T PRK11776 239 HHQPESCVVFCNTKKECQEVADAL----NAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD 300 (460)
T ss_pred hcCCCceEEEECCHHHHHHHHHHH----HhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 345567999999988777766554 45689999999999988776543 458999986
No 457
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=36.85 E-value=1.3e+02 Score=28.42 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHH
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNI 450 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~ 450 (816)
..+.-+-+||.++.||-... .+ ..+...+..+.+.+. ..|||++|.|=..|-.|..+
T Consensus 49 ~~~~a~~~Gl~y~~iPv~~~--------~~---~~~~v~~f~~~l~~~---~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 49 EAAAAEALGLQYVHIPVDGG--------AI---TEEDVEAFADALESL---PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHCT-EEEE----TT--------T-----HHHHHHHHHHHHTT---TTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEeecCCC--------CC---CHHHHHHHHHHHHhC---CCCEEEECCCChhHHHHHHH
Confidence 34566789999999995432 11 234555555555442 46999999999888777654
No 458
>KOG1002|consensus
Probab=36.61 E-value=81 Score=37.35 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhc-CCeEEEecCCCCHHH-HHhhcCCC
Q psy2371 94 YGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWL-GLSIGVNSSEISHSL-KKKSYEAD 171 (816)
Q Consensus 94 ~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-glsv~~i~~~~~~~~-r~~~y~~d 171 (816)
.|-|.-=.-|-|||+-+ ++++++-+.+.+.+||+|+-.|.+ |...+-.+. |-.-..++.|..... -++-.+.|
T Consensus 205 ~GGiLADEMGMGKTIQt-IaLllae~~ra~tLVvaP~VAlmQ----W~nEI~~~T~gslkv~~YhG~~R~~nikel~~YD 279 (791)
T KOG1002|consen 205 AGGILADEMGMGKTIQT-IALLLAEVDRAPTLVVAPTVALMQ----WKNEIERHTSGSLKVYIYHGAKRDKNIKELMNYD 279 (791)
T ss_pred ccceehhhhccchHHHH-HHHHHhccccCCeeEEccHHHHHH----HHHHHHHhccCceEEEEEecccccCCHHHhhcCc
Confidence 35565566799999754 344445788889999999988865 776666655 433344555543221 12223569
Q ss_pred EEEECCCcchhhhhhhhhccCC--------CccccccceEEEecchhhhh
Q psy2371 172 ITYGTNNEFGFDYLRDNMVFNS--------NDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 172 I~ygT~~~l~fDyLrD~~~~~~--------~~~~~r~~~~~IvDEaDs~L 213 (816)
+|..|-+-+.--|=+.+-.+.+ .-+-+-.++-+|+||||.|=
T Consensus 280 vVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 280 VVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred EEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 9998877665555333322111 11222356778999999875
No 459
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=36.55 E-value=56 Score=39.19 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=21.1
Q ss_pred chhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 180 FGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 180 l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+.|-+|+.+....-.....+.+++||||||.|-
T Consensus 97 ~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt 130 (535)
T PRK08451 97 RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT 130 (535)
T ss_pred cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC
Confidence 3567777765321111123467899999999875
No 460
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=36.55 E-value=34 Score=37.52 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=23.5
Q ss_pred eecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 99 EMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 99 em~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
-+|-|.|||-+++-.++..+-.|+.|++|
T Consensus 6 ~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 6 YGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45889999988777777677789888877
No 461
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=36.52 E-value=1e+02 Score=36.72 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=42.8
Q ss_pred CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 121 g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
...++|.+.|...+.+.+ ......|++++.+.|++++++|...+ ..+|+++|-
T Consensus 273 ~~~~IVF~~tk~~~~~l~----~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 273 EGRVIVFVRTKRLVEELA----ESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred CCeEEEEeCcHHHHHHHH----HHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec
Confidence 346999999998888644 56678899999999999998887654 468888875
No 462
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=36.43 E-value=40 Score=38.56 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=21.4
Q ss_pred cCCc-eeeecCCCCchHHH-HHHHHHHHhcCCcEEEEeC
Q psy2371 93 HYGN-ISEMQTGEGKTLVA-TLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 93 ~~G~-Iaem~TGEGKTL~~-~Lpa~l~aL~g~~V~VvT~ 129 (816)
..|. ++-++||+|||-.. +|.-+++. .....+|+|.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~-~~~~~~Ivti 185 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGE-TYPDRKIVTY 185 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 4566 78999999999543 33333322 1223566664
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=36.34 E-value=36 Score=38.27 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=21.5
Q ss_pred cCCc-eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCc
Q psy2371 93 HYGN-ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTIS 130 (816)
Q Consensus 93 ~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n 130 (816)
..|. +..++||+|||-+.-. ++..+. ..+.+|+|.-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a--l~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS--MIDYINKNAAGHIITIE 158 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH--HHHhhCcCCCCEEEEEc
Confidence 3566 7899999999965432 223333 2345566643
No 464
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=36.34 E-value=1.1e+02 Score=35.77 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=42.0
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
....++|.|+|+.-|.+.++.+ ...|+++..+.++++..+|.... ..+|+++|.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L----~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd 303 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQL----NKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD 303 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHH----HHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 3467999999988877666554 45689999999999987776543 458999886
No 465
>PRK11670 antiporter inner membrane protein; Provisional
Probab=36.16 E-value=37 Score=38.69 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=26.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
++-.+-|+|||-+++-.++..|..|+.|.+|=-
T Consensus 112 V~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 112 VSSGKGGVGKSSTAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 678999999999888777766777888877643
No 466
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=36.05 E-value=44 Score=32.21 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred eeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 98 SEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 98 aem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
...+-|+|||.+++--+...+..|+.|+++--.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D 37 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDAD 37 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 456889999977666665556778877776643
No 467
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.03 E-value=36 Score=40.86 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=13.9
Q ss_pred eeeecCCCCchHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa 114 (816)
|..++.|.|||.++-+-+
T Consensus 42 Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 42 LFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 778999999997655444
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.02 E-value=40 Score=39.88 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=39.5
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
+|+..-|-.+-|+++ .|. +..+.+|+|||.-+.=-++..+.. |..|+.++- .+-..+..+.|..
T Consensus 15 TGI~~LD~~l~GG~p--~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~-ee~~~~i~~~~~~ 81 (509)
T PRK09302 15 TGIEGFDDITHGGLP--KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF-EESPEDIIRNVAS 81 (509)
T ss_pred CCchhHHHhhcCCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc-cCCHHHHHHHHHH
Confidence 344444555555533 566 889999999997655445545556 888877764 3444455555543
No 469
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=35.99 E-value=59 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=31.6
Q ss_pred cCCCcEEEEEccc--HhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSI--ENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si--~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
..++||+|+|.+- ..|...+..|...|+++.+|+|..
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~ 100 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGL 100 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCH
Confidence 4678999999975 478999999999999988898874
No 470
>PRK08181 transposase; Validated
Probab=35.93 E-value=44 Score=36.44 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=21.9
Q ss_pred ceeeecCCCCchH-HHHHHHHHHHhcCCcEEEEeC
Q psy2371 96 NISEMQTGEGKTL-VATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 96 ~Iaem~TGEGKTL-~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
-+.-+++|+|||- +.++.-. ..-.|..|..++.
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~-a~~~g~~v~f~~~ 142 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLA-LIENGWRVLFTRT 142 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHH-HHHcCCceeeeeH
Confidence 3889999999994 4444332 2235777876664
No 471
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=35.80 E-value=60 Score=36.71 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=13.6
Q ss_pred cccceEEEecchhhhh
Q psy2371 198 QRKLNFVILDEIDSIL 213 (816)
Q Consensus 198 ~r~~~~~IvDEaDs~L 213 (816)
..+.+++|||+||.|-
T Consensus 130 ~~~~kV~iI~~ae~m~ 145 (342)
T PRK06964 130 RGGARVVVLYPAEALN 145 (342)
T ss_pred cCCceEEEEechhhcC
Confidence 3567899999999986
No 472
>KOG0991|consensus
Probab=35.60 E-value=22 Score=38.26 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.1
Q ss_pred ccceEEEecchhhhhhhcc
Q psy2371 199 RKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 199 r~~~~~IvDEaDs~LiDea 217 (816)
..++.+|+||||||- +.|
T Consensus 112 grhKIiILDEADSMT-~gA 129 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGA 129 (333)
T ss_pred CceeEEEeeccchhh-hHH
Confidence 467899999999997 655
No 473
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=35.58 E-value=25 Score=42.25 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=14.1
Q ss_pred eeeecCCCCchHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa 114 (816)
|..++.|+|||-++-+-+
T Consensus 42 Lf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 678899999997765544
No 474
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=35.57 E-value=1.1e+02 Score=39.43 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=57.6
Q ss_pred hcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECCCcchhhhhhhhhccC
Q psy2371 119 LSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTNNEFGFDYLRDNMVFN 192 (816)
Q Consensus 119 L~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~~~l~fDyLrD~~~~~ 192 (816)
..|.+|.|+|++.+=+.+.++.+..++ -+++|+++.|+|+..+|.... ..+|+++|. + +-
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~--i----ie------ 723 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT--I----IE------ 723 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC--h----hh------
Confidence 468889999999887777776666543 378999999999987776542 579999997 2 11
Q ss_pred CCccccccceEEEecchhhh
Q psy2371 193 SNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 193 ~~~~~~r~~~~~IvDEaDs~ 212 (816)
.-+....++++|++-+|..
T Consensus 724 -~GIDIp~v~~VIi~~a~~~ 742 (926)
T TIGR00580 724 -TGIDIPNANTIIIERADKF 742 (926)
T ss_pred -cccccccCCEEEEecCCCC
Confidence 1234457888898888764
No 475
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=35.50 E-value=1.1e+02 Score=29.10 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=35.5
Q ss_pred EEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCc
Q psy2371 434 VLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNM 488 (816)
Q Consensus 434 VLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnm 488 (816)
|+|=+++.+.+....+...++|++..+=.-...+.+.+.+.++.++..|++|.||
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 7777778888888888888888887664444443443444555556889999998
No 476
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=35.48 E-value=31 Score=42.40 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=37.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
++-++||+|||..+++|.++.+ +..+.|.=|--||..-.+.+-..
T Consensus 148 LviApTrSGKgvg~VIPnLL~~--~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 148 LCFAPTRSGKGVGLVVPTLLTW--PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred EEEecCCCCcceeEehhhHHhC--CCCEEEEeCcchHHHHHHHHHHh
Confidence 8999999999999999998753 45789999999998866655443
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=35.40 E-value=41 Score=36.44 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=21.4
Q ss_pred Hhccccchhhhhhh-ccccCCc-eeeecCCCCchHHH
Q psy2371 76 VLKMRHFDVQLIGG-IALHYGN-ISEMQTGEGKTLVA 110 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~-~~L~~G~-Iaem~TGEGKTL~~ 110 (816)
.+|+.|..++.+-- +....|. +.-+.||+|||-+.
T Consensus 61 ~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 46665554443322 2223454 78899999999654
No 478
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=34.93 E-value=43 Score=34.49 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=24.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n 130 (816)
++-.+-|+|||.+++-.++..+. .|+.|++|-.+
T Consensus 40 v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 40 VTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44557899999876655554454 69999888654
No 479
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=34.87 E-value=37 Score=36.53 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=23.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYL 133 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yL 133 (816)
+.++.+|+|||..+-.-+. ..|..+..++-+..+
T Consensus 25 LL~G~~GtGKT~lA~~la~---~lg~~~~~i~~~~~~ 58 (262)
T TIGR02640 25 HLRGPAGTGKTTLAMHVAR---KRDRPVMLINGDAEL 58 (262)
T ss_pred EEEcCCCCCHHHHHHHHHH---HhCCCEEEEeCCccC
Confidence 6789999999976653332 337777777665533
No 480
>PRK06749 replicative DNA helicase; Provisional
Probab=34.86 E-value=2.8e+02 Score=32.29 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=23.8
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+..|. |.-+.||-|||.-++=-+...|..|++|.+++
T Consensus 183 l~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fS 221 (428)
T PRK06749 183 LQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFS 221 (428)
T ss_pred CCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEE
Confidence 45676 77899999999655544433344455665553
No 481
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.80 E-value=69 Score=28.43 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=31.5
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCC-CeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNL-PHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi-~~~vLnak~ 465 (816)
..+.||+|.|.+-..|...+..|+..|+ ++.+|+|..
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 4678999999998899999999999999 477788763
No 482
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=34.59 E-value=86 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.3
Q ss_pred ccCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCC
Q psy2371 428 YIKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAK 464 (816)
Q Consensus 428 ~~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak 464 (816)
...++|++|.|.+-..|...+..|+..|+. +.+|.|.
T Consensus 53 ~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG 90 (96)
T cd01444 53 LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGG 90 (96)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCC
Confidence 357789999999999999999999999986 5566665
No 483
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=34.24 E-value=2e+02 Score=25.76 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=39.8
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhCC---CCeEEEcCCchHHHHHHHHHcCCCccEEEecCc
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKNN---LPHSVLNAKQHKLEAQIIAQAGHPKMITIATNM 488 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~g---i~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnm 488 (816)
...++||+|++....+.....+.... ++..++++........ ...+....|+++|.-
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--HHhcCCCCEEEECcH
Confidence 35689999999999998888777554 7788888764433322 222345678888853
No 484
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=33.96 E-value=43 Score=35.52 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=25.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++.-|=|.|||-+++..++..+..|+.|+||=
T Consensus 6 v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD 37 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALASDGKRVALFE 37 (231)
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45567799999988887777778898888773
No 485
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=33.79 E-value=43 Score=35.91 Aligned_cols=28 Identities=29% Similarity=0.204 Sum_probs=22.4
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
+|=|.|||.+++-.++..+..|+.|.||
T Consensus 7 gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 7 GKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5889999997777776667788888776
No 486
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=33.76 E-value=1.1e+02 Score=38.90 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=42.2
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc----CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY----EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y----~~dI~ygT~ 177 (816)
.|++|+|.|.|.+- ++++..+....|+++.++.+..+..++.... .-.|+++||
T Consensus 448 ~GrpVLV~t~sv~~----se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~VtIATn 505 (908)
T PRK13107 448 RGQPVLVGTVSIEQ----SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATN 505 (908)
T ss_pred cCCCEEEEeCcHHH----HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCcEEEecC
Confidence 48899999999874 5567778888899999998888766665442 235999998
No 487
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=33.73 E-value=68 Score=34.87 Aligned_cols=51 Identities=12% Similarity=0.271 Sum_probs=42.2
Q ss_pred cCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCC
Q psy2371 406 QDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLP 457 (816)
Q Consensus 406 ~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~ 457 (816)
-|.+|.+-.+=|++| +.+.+..+.|-.+.+|++++++++.+...|++.|+-
T Consensus 164 vDav~LDmp~PW~~l-e~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 164 VDAVFLDLPDPWNVL-EHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred cCEEEEcCCChHHHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 378888888888854 445666677888999999999999999999999874
No 488
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=33.59 E-value=25 Score=37.45 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=22.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|+ .|-|.|||.+++-.++..+..| .|+++
T Consensus 7 v~-~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 7 IY-GKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred EE-CCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 55 5899999987777776556678 77776
No 489
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=33.41 E-value=65 Score=30.19 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=32.4
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCC--CeEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNL--PHSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi--~~~vLnak~~ 466 (816)
..++|++|+|.+-..|...+..|...|+ .+..|.|...
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 4578999999998899999999999999 5778877643
No 490
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=33.40 E-value=57 Score=40.84 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.5
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
++..++++||+|.+=
T Consensus 556 ~p~sVlllDEieka~ 570 (758)
T PRK11034 556 HPHAVLLLDEIEKAH 570 (758)
T ss_pred CCCcEEEeccHhhhh
Confidence 356899999999984
No 491
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=33.27 E-value=1.2e+02 Score=37.26 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=52.4
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNS 193 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~ 193 (816)
.|..|+|.|+|..-|.+.++.+ ...|+++..+.++++..+|... -..+|++||+ -+ ..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L----~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-~L-----~r------ 504 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYL----KELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-LL-----RE------ 504 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHH----hhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-hh-----cC------
Confidence 4678999999998877666544 4568999998888887665432 2468888884 22 22
Q ss_pred CccccccceEEEecchhhh
Q psy2371 194 NDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 194 ~~~~~r~~~~~IvDEaDs~ 212 (816)
-.....++++|+=++|..
T Consensus 505 -GfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 505 -GLDLPEVSLVAILDADKE 522 (655)
T ss_pred -CeeeCCCcEEEEeCcccc
Confidence 234567888887777753
No 492
>PRK13768 GTPase; Provisional
Probab=33.11 E-value=47 Score=35.64 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=22.2
Q ss_pred eeeecCCCCchHHH-HHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVA-TLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~-~Lpa~l~aL~g~~V~VvT 128 (816)
++.++.|+|||... .+..+ .+..|+.|+++.
T Consensus 6 ~v~G~~G~GKTt~~~~~~~~-l~~~g~~v~~i~ 37 (253)
T PRK13768 6 FFLGTAGSGKTTLTKALSDW-LEEQGYDVAIVN 37 (253)
T ss_pred EEECCCCccHHHHHHHHHHH-HHhcCCceEEEE
Confidence 56678999999744 44444 356788888876
No 493
>PRK08727 hypothetical protein; Validated
Probab=33.04 E-value=79 Score=33.39 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=20.8
Q ss_pred eeeecCCCCchH-HHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTL-VATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL-~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++||+|||- +-++... ..-.|..|..++.+
T Consensus 45 ~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~~~~ 78 (233)
T PRK08727 45 YLSGPAGTGKTHLALALCAA-AEQAGRSSAYLPLQ 78 (233)
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEeHH
Confidence 677899999994 4333332 22346677777644
No 494
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=32.88 E-value=23 Score=44.02 Aligned_cols=18 Identities=39% Similarity=0.313 Sum_probs=13.5
Q ss_pred eeeecCCCCchHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa 114 (816)
+-.++||+|||..+-.-+
T Consensus 488 lf~Gp~GvGKT~lA~~la 505 (731)
T TIGR02639 488 LFTGPTGVGKTELAKQLA 505 (731)
T ss_pred EEECCCCccHHHHHHHHH
Confidence 678999999996554443
No 495
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=32.85 E-value=49 Score=37.21 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=24.1
Q ss_pred eecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 99 EMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 99 em~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
-++.|+|||.+++-.++..+..|+.|+++-
T Consensus 37 ~gkgG~GKSt~a~nLa~~la~~g~rVllid 66 (329)
T cd02033 37 YGKGGIGKSFTLANLSYMMAQQGKRVLLIG 66 (329)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 479999999987777766677888888773
No 496
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.68 E-value=48 Score=35.13 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=24.6
Q ss_pred eeeecCCCCchHHHHHHHHHHH-hcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS-LSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a-L~g~~V~Vv 127 (816)
|+.-|=|.|||.+++-.++..+ ..|+.|+++
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 5667889999988888877777 556888876
No 497
>PRK05642 DNA replication initiation factor; Validated
Probab=32.38 E-value=1.3e+02 Score=31.72 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhhccccCCceeeecCCCCch-HHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 53 HSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKT-LVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 53 ~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~Iaem~TGEGKT-L~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
....++|+..+..-+.+..++.+... +..++. ...-+.-+++|+||| |+.++.-.+ .-.|..|..++..+
T Consensus 13 ~~~~tfdnF~~~~~~~a~~~~~~~~~------~~~~~~--~~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~~~~ 83 (234)
T PRK05642 13 RDDATFANYYPGANAAALGYVERLCE------ADAGWT--ESLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLPLAE 83 (234)
T ss_pred CCcccccccCcCChHHHHHHHHHHhh------ccccCC--CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEeeHHH
Confidence 33456777765555556566555321 001111 112267899999999 444332221 22477787777643
No 498
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=32.36 E-value=1.4e+02 Score=32.79 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=61.6
Q ss_pred chhcccccccch------HHHHHHHhcC-eE--EEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhc-cCCCcEEEE
Q psy2371 368 KISGMTGTAETE------AYEFQEIYKL-ET--ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCY-IKEQPVLVG 437 (816)
Q Consensus 368 ~l~GmTGTa~te------~~e~~~~Y~l-~v--v~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~-~~grpVLVf 437 (816)
++.=||||.... ++++.+.|+- .+ +..|.|. .++. +..+..|.... ...-.++|+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~~I~h~tyPdnf------------~~e~---EttIskI~~lAdDp~mKaIVv 68 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDVMIKHVTYPDNF------------MSEQ---ETTISKIVSLADDPDMKAIVV 68 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHHEEEEEE--TTG------------GGCH---HHHHHHHHGGGG-TTEEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcceEEEEeCCCcc------------cchH---HHHHHHHHHhccCCCccEEEE
Confidence 455689998763 3577889987 33 4556553 2332 34555555532 234569999
Q ss_pred EcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCcccc
Q psy2371 438 TTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDII 496 (816)
Q Consensus 438 t~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~ 496 (816)
+..+.-.-.--+..++..-..-.+.|..++.-.. +..+ ..|.+.+|-..||..|.
T Consensus 69 ~q~vpGt~~af~kIkekRpDIl~ia~~~~EDp~~-i~~~---aDi~~~~D~~~~G~~i~ 123 (275)
T PF12683_consen 69 SQAVPGTAEAFRKIKEKRPDILLIAGEPHEDPEV-ISSA---ADIVVNPDEISRGYTIV 123 (275)
T ss_dssp E-SS---HHHHHHHHHH-TTSEEEESS--S-HHH-HHHH---SSEEEE--HHHHHHHHH
T ss_pred eCCCcchHHHHHHHHhcCCCeEEEcCCCcCCHHH-Hhhc---cCeEeccchhhccHHHH
Confidence 9988776666667776666667778876664444 4433 36889999999999995
No 499
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=32.27 E-value=55 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=23.9
Q ss_pred eeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHH
Q psy2371 98 SEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLA 134 (816)
Q Consensus 98 aem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA 134 (816)
.-+.+|+|||..+-.-+......|..+.++...+|.-
T Consensus 4 i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 4 IAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 3468999999765544433334577788877666553
No 500
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=32.25 E-value=77 Score=34.89 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=19.9
Q ss_pred chhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 180 FGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 180 l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.+.|-+|+....-.......+.+++|||+||.|=
T Consensus 73 i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~ 106 (313)
T PRK05564 73 IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT 106 (313)
T ss_pred CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC
Confidence 4445556543210111233578899999999884
Done!