Query psy2371
Match_columns 816
No_of_seqs 378 out of 2479
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipc_A Preprotein translocase 100.0 9E-213 3E-217 1858.5 74.6 804 1-815 2-936 (997)
2 3jux_A Protein translocase sub 100.0 5E-209 2E-213 1800.9 71.9 742 10-815 5-816 (822)
3 1nkt_A Preprotein translocase 100.0 3E-201 1E-205 1767.5 80.6 794 2-815 30-863 (922)
4 2fsf_A Preprotein translocase 100.0 6E-197 2E-201 1729.2 69.6 796 7-815 1-821 (853)
5 1tf5_A Preprotein translocase 100.0 9E-189 3E-193 1663.2 69.6 759 1-815 5-781 (844)
6 2db3_A ATP-dependent RNA helic 100.0 1.8E-40 6.2E-45 373.6 30.4 321 77-581 74-409 (434)
7 2i4i_A ATP-dependent RNA helic 100.0 1.2E-36 4E-41 335.9 27.5 325 77-581 33-385 (417)
8 2j0s_A ATP-dependent RNA helic 100.0 9.2E-37 3.1E-41 337.0 25.1 320 77-580 55-384 (410)
9 1xti_A Probable ATP-dependent 100.0 7.2E-35 2.5E-39 318.5 33.1 321 77-581 26-359 (391)
10 3eiq_A Eukaryotic initiation f 100.0 4.2E-35 1.4E-39 322.7 30.5 319 77-580 58-388 (414)
11 1s2m_A Putative ATP-dependent 100.0 7.6E-35 2.6E-39 320.2 32.2 348 55-600 20-379 (400)
12 3oiy_A Reverse gyrase helicase 100.0 6E-36 2E-40 332.5 23.4 326 64-576 5-362 (414)
13 3pey_A ATP-dependent RNA helic 100.0 1.1E-34 3.8E-39 316.0 32.9 320 77-581 23-358 (395)
14 3i5x_A ATP-dependent RNA helic 100.0 2.8E-35 9.5E-40 340.0 29.6 334 76-580 89-450 (563)
15 1hv8_A Putative ATP-dependent 100.0 9.4E-35 3.2E-39 313.4 30.3 314 77-580 24-346 (367)
16 3sqw_A ATP-dependent RNA helic 100.0 1.2E-34 4E-39 337.5 30.8 339 76-581 38-400 (579)
17 3fht_A ATP-dependent RNA helic 100.0 4.6E-34 1.6E-38 313.8 29.1 322 77-581 43-381 (412)
18 3fmp_B ATP-dependent RNA helic 100.0 7.3E-36 2.5E-40 338.5 13.2 322 77-581 110-448 (479)
19 2z0m_A 337AA long hypothetical 100.0 2.5E-33 8.4E-38 299.3 23.1 307 76-580 11-323 (337)
20 2v1x_A ATP-dependent DNA helic 100.0 5E-33 1.7E-37 325.6 26.5 328 69-580 32-375 (591)
21 1fuu_A Yeast initiation factor 100.0 1.6E-34 5.5E-39 315.6 12.9 320 77-580 39-367 (394)
22 4a2p_A RIG-I, retinoic acid in 100.0 6.4E-33 2.2E-37 316.9 23.6 128 79-213 6-143 (556)
23 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-32 4.9E-37 317.3 25.7 317 71-581 15-345 (523)
24 3tbk_A RIG-I helicase domain; 100.0 1E-32 3.5E-37 314.2 24.1 129 78-213 2-140 (555)
25 4ddu_A Reverse gyrase; topoiso 100.0 3.2E-32 1.1E-36 338.1 21.1 137 67-213 65-209 (1104)
26 3fho_A ATP-dependent RNA helic 100.0 5.6E-32 1.9E-36 310.7 18.6 318 78-581 138-472 (508)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-30 5.5E-35 313.7 24.7 128 79-213 247-384 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 1.1E-30 3.7E-35 289.3 21.1 354 78-580 7-476 (494)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 5E-31 1.7E-35 326.7 18.7 132 69-213 46-188 (1054)
30 4gl2_A Interferon-induced heli 100.0 3.1E-31 1.1E-35 313.6 13.3 134 78-213 5-149 (699)
31 2ykg_A Probable ATP-dependent 100.0 4.4E-30 1.5E-34 303.6 21.9 131 76-213 8-149 (696)
32 4a2w_A RIG-I, retinoic acid in 100.0 1E-29 3.6E-34 311.8 22.6 129 78-213 246-384 (936)
33 1gm5_A RECG; helicase, replica 100.0 2.2E-30 7.5E-35 311.1 16.0 304 74-578 362-696 (780)
34 2va8_A SSO2462, SKI2-type heli 100.0 5E-29 1.7E-33 296.7 27.4 328 76-581 25-410 (715)
35 2p6r_A Afuhel308 helicase; pro 100.0 4.5E-30 1.5E-34 305.5 16.9 314 77-580 21-389 (702)
36 3l9o_A ATP-dependent RNA helic 100.0 4.9E-29 1.7E-33 309.7 23.1 125 75-216 179-305 (1108)
37 2zj8_A DNA helicase, putative 100.0 7.5E-29 2.6E-33 295.8 19.8 318 77-580 19-388 (720)
38 2eyq_A TRCF, transcription-rep 100.0 5.9E-28 2E-32 301.3 27.5 309 74-582 597-925 (1151)
39 2jlq_A Serine protease subunit 100.0 1.6E-28 5.5E-33 278.3 16.0 286 80-582 4-314 (451)
40 2xgj_A ATP-dependent RNA helic 100.0 7.8E-28 2.7E-32 296.6 22.9 126 75-217 81-208 (1010)
41 2oca_A DAR protein, ATP-depend 100.0 9E-29 3.1E-33 282.3 13.2 332 78-581 111-457 (510)
42 2whx_A Serine protease/ntpase/ 100.0 6E-29 2.1E-33 292.4 11.8 289 79-577 170-476 (618)
43 4a4z_A Antiviral helicase SKI2 99.9 3.4E-27 1.2E-31 290.7 23.3 129 75-218 34-164 (997)
44 3o8b_A HCV NS3 protease/helica 99.9 1.1E-27 3.7E-32 282.0 17.3 289 78-583 215-518 (666)
45 2fwr_A DNA repair protein RAD2 99.9 6.9E-29 2.4E-33 280.6 2.8 340 78-574 91-447 (472)
46 2z83_A Helicase/nucleoside tri 99.9 4.8E-27 1.6E-31 266.8 15.0 103 431-579 190-313 (459)
47 2wv9_A Flavivirin protease NS2 99.9 4.6E-27 1.6E-31 278.7 12.8 102 430-577 409-531 (673)
48 1yks_A Genome polyprotein [con 99.9 1E-26 3.5E-31 262.9 13.7 108 431-576 177-296 (440)
49 2xau_A PRE-mRNA-splicing facto 99.9 4.1E-26 1.4E-30 274.6 12.2 307 78-580 91-444 (773)
50 3h1t_A Type I site-specific re 99.9 1.1E-24 3.7E-29 253.7 17.4 336 78-587 176-566 (590)
51 4f92_B U5 small nuclear ribonu 99.9 2.3E-24 8E-29 276.9 20.2 130 80-216 926-1061(1724)
52 3rc3_A ATP-dependent RNA helic 99.9 1E-22 3.5E-27 241.3 32.2 103 433-580 322-445 (677)
53 2v6i_A RNA helicase; membrane, 99.9 1.4E-24 4.8E-29 244.7 15.4 108 431-576 171-288 (431)
54 4f92_B U5 small nuclear ribonu 99.9 4.9E-24 1.7E-28 274.0 19.9 130 80-216 79-222 (1724)
55 3dmq_A RNA polymerase-associat 99.9 4.1E-22 1.4E-26 245.3 25.7 123 411-578 485-612 (968)
56 1z63_A Helicase of the SNF2/RA 99.9 4E-22 1.4E-26 226.8 15.2 120 412-574 322-446 (500)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.7E-21 5.8E-26 240.0 16.2 122 79-213 270-414 (1038)
58 3fe2_A Probable ATP-dependent 99.9 7.2E-21 2.5E-25 197.0 17.0 166 77-291 47-225 (242)
59 3i32_A Heat resistant RNA depe 99.8 8.6E-22 2.9E-26 212.5 8.6 130 408-582 7-138 (300)
60 3eaq_A Heat resistant RNA depe 99.8 9.3E-22 3.2E-26 201.2 8.3 130 407-581 9-140 (212)
61 1c4o_A DNA nucleotide excision 99.8 1.5E-19 5.2E-24 214.3 26.5 175 359-583 373-554 (664)
62 3ly5_A ATP-dependent RNA helic 99.8 1.9E-20 6.4E-25 197.0 15.8 167 77-291 72-250 (262)
63 3fmo_B ATP-dependent RNA helic 99.8 6.6E-20 2.3E-24 197.1 14.4 167 77-291 110-285 (300)
64 3iuy_A Probable ATP-dependent 99.8 9.2E-20 3.2E-24 186.3 14.8 165 77-291 38-216 (228)
65 2pl3_A Probable ATP-dependent 99.8 2.4E-19 8.1E-24 184.2 17.6 167 77-291 43-220 (236)
66 3ber_A Probable ATP-dependent 99.8 2.6E-19 8.8E-24 187.0 17.5 168 76-291 60-235 (249)
67 3dkp_A Probable ATP-dependent 99.8 1.9E-19 6.3E-24 186.0 13.2 172 77-291 47-228 (245)
68 2oxc_A Probable ATP-dependent 99.8 3.7E-19 1.3E-23 182.7 15.4 167 77-291 42-216 (230)
69 1t5i_A C_terminal domain of A 99.8 3.5E-19 1.2E-23 176.2 14.5 129 408-581 10-140 (172)
70 2hjv_A ATP-dependent RNA helic 99.8 6.8E-19 2.3E-23 172.1 16.4 129 408-581 14-144 (163)
71 3bor_A Human initiation factor 99.8 2.8E-19 9.4E-24 184.7 13.5 166 77-291 48-222 (237)
72 1q0u_A Bstdead; DEAD protein, 99.8 2.9E-19 9.8E-24 181.8 12.3 166 77-291 22-199 (219)
73 2rb4_A ATP-dependent RNA helic 99.8 1.4E-18 4.6E-23 171.7 15.8 127 409-580 13-148 (175)
74 1wrb_A DJVLGB; RNA helicase, D 99.8 1.4E-18 4.9E-23 180.5 16.5 170 77-291 41-227 (253)
75 1vec_A ATP-dependent RNA helic 99.8 1.2E-18 4.2E-23 174.5 14.5 166 77-291 21-195 (206)
76 1z3i_X Similar to RAD54-like; 99.8 8.4E-18 2.9E-22 198.7 23.6 118 414-574 398-521 (644)
77 3mwy_W Chromo domain-containin 99.8 3.6E-18 1.2E-22 206.4 20.9 118 414-574 555-677 (800)
78 2p6n_A ATP-dependent RNA helic 99.8 9E-19 3.1E-23 176.6 12.8 128 407-580 33-162 (191)
79 1qde_A EIF4A, translation init 99.8 1.6E-18 5.6E-23 176.1 13.8 166 77-291 32-204 (224)
80 2d7d_A Uvrabc system protein B 99.8 1.9E-17 6.6E-22 196.2 25.0 126 414-583 428-560 (661)
81 1fuk_A Eukaryotic initiation f 99.8 4.2E-18 1.4E-22 166.6 16.1 126 410-580 10-138 (165)
82 1t6n_A Probable ATP-dependent 99.8 2.7E-18 9.3E-23 174.2 14.0 167 77-291 32-208 (220)
83 2jgn_A DBX, DDX3, ATP-dependen 99.8 2.1E-18 7.2E-23 172.8 12.3 130 408-581 24-155 (185)
84 2gxq_A Heat resistant RNA depe 99.7 1.4E-17 4.9E-22 166.6 16.2 164 77-291 19-193 (207)
85 2yjt_D ATP-dependent RNA helic 99.5 1.7E-18 5.8E-23 170.4 0.0 123 414-581 15-139 (170)
86 2vl7_A XPD; helicase, unknown 99.7 3.5E-15 1.2E-19 172.8 22.6 134 76-218 3-191 (540)
87 3b6e_A Interferon-induced heli 99.6 1.5E-15 5.2E-20 152.1 8.7 136 76-213 29-175 (216)
88 1rif_A DAR protein, DNA helica 99.5 5E-14 1.7E-18 149.0 9.3 124 79-213 112-238 (282)
89 1z5z_A Helicase of the SNF2/RA 99.4 2.8E-13 9.5E-18 143.9 8.9 120 412-574 93-217 (271)
90 3llm_A ATP-dependent RNA helic 99.4 5.7E-13 2E-17 137.4 9.1 126 78-216 59-192 (235)
91 3crv_A XPD/RAD3 related DNA he 99.3 1.1E-12 3.8E-17 152.2 9.6 131 78-219 1-190 (551)
92 2fz4_A DNA repair protein RAD2 99.2 2.6E-11 8.8E-16 125.9 8.0 112 78-213 91-205 (237)
93 4a15_A XPD helicase, ATP-depen 98.4 3.6E-07 1.2E-11 107.6 8.1 78 80-157 3-87 (620)
94 1w36_D RECD, exodeoxyribonucle 98.2 2.7E-06 9.1E-11 100.0 8.9 71 82-152 151-227 (608)
95 3lfu_A DNA helicase II; SF1 he 96.9 0.057 1.9E-06 62.9 22.5 107 80-212 9-120 (647)
96 1uaa_A REP helicase, protein ( 96.6 0.026 9E-07 66.5 16.5 109 79-212 1-114 (673)
97 1pjr_A PCRA; DNA repair, DNA r 96.6 0.082 2.8E-06 63.1 20.7 107 80-212 11-122 (724)
98 4b3f_X DNA-binding protein smu 96.5 0.0071 2.4E-07 71.3 10.6 60 82-141 191-253 (646)
99 2gk6_A Regulator of nonsense t 96.3 0.0097 3.3E-07 69.9 10.4 62 81-142 181-245 (624)
100 2xzl_A ATP-dependent helicase 95.8 0.034 1.2E-06 67.3 11.8 63 81-143 361-426 (802)
101 3e1s_A Exodeoxyribonuclease V, 95.7 0.012 4.1E-07 68.7 7.0 62 79-140 188-251 (574)
102 2wjy_A Regulator of nonsense t 95.7 0.025 8.6E-07 68.5 9.7 63 80-142 356-421 (800)
103 3upu_A ATP-dependent DNA helic 92.7 0.15 5.3E-06 57.2 7.2 43 97-139 49-92 (459)
104 3u4q_A ATP-dependent helicase/ 92.5 0.26 9E-06 62.3 9.6 126 77-213 7-140 (1232)
105 3u4q_B ATP-dependent helicase/ 92.5 5.9 0.0002 49.7 21.7 55 410-464 317-376 (1166)
106 2ffh_A Protein (FFH); SRP54, s 92.4 3.4 0.00012 46.3 17.5 82 65-155 74-159 (425)
107 1xx6_A Thymidine kinase; NESG, 92.3 0.15 5.1E-06 51.0 5.7 37 94-130 7-45 (191)
108 2orw_A Thymidine kinase; TMTK, 92.3 0.098 3.4E-06 51.7 4.4 34 97-130 7-40 (184)
109 1ls1_A Signal recognition part 92.2 3.6 0.00012 43.5 16.7 37 94-130 97-135 (295)
110 3dm5_A SRP54, signal recogniti 92.2 3.1 0.00011 46.9 16.8 63 97-160 104-166 (443)
111 3cpe_A Terminase, DNA packagin 91.8 0.21 7.2E-06 58.2 7.0 73 77-149 160-236 (592)
112 2o0j_A Terminase, DNA packagin 91.4 0.28 9.6E-06 54.4 7.2 72 78-149 161-236 (385)
113 3kl4_A SRP54, signal recogniti 91.4 3.6 0.00012 46.2 16.2 115 37-156 41-159 (433)
114 2xxa_A Signal recognition part 88.9 5 0.00017 44.9 14.8 84 66-154 75-161 (433)
115 1j8m_F SRP54, signal recogniti 88.2 16 0.00056 38.5 17.5 111 36-154 41-158 (297)
116 2r6a_A DNAB helicase, replicat 85.9 7.6 0.00026 43.4 14.0 146 57-213 161-326 (454)
117 2q6t_A DNAB replication FORK h 85.1 6.3 0.00021 43.9 12.8 144 58-213 159-323 (444)
118 1vma_A Cell division protein F 84.9 14 0.00048 39.3 14.9 82 65-152 79-162 (306)
119 3hgt_A HDA1 complex subunit 3; 81.6 4.4 0.00015 43.9 9.2 113 413-566 107-220 (328)
120 2v3c_C SRP54, signal recogniti 81.2 11 0.00036 42.3 12.6 137 37-182 43-194 (432)
121 1a5t_A Delta prime, HOLB; zinc 81.1 2.1 7.3E-05 45.7 6.6 35 179-213 87-121 (334)
122 3e2i_A Thymidine kinase; Zn-bi 79.4 2.4 8.2E-05 43.4 6.0 34 97-130 32-65 (219)
123 1zu4_A FTSY; GTPase, signal re 78.2 7.1 0.00024 41.8 9.6 83 39-129 52-141 (320)
124 1t5i_A C_terminal domain of A 78.2 7.1 0.00024 37.4 8.7 60 114-177 24-89 (172)
125 2hjv_A ATP-dependent RNA helic 78.0 7.9 0.00027 36.5 8.9 61 113-177 27-93 (163)
126 2rb4_A ATP-dependent RNA helic 77.3 5 0.00017 38.4 7.3 59 115-177 28-92 (175)
127 1fuk_A Eukaryotic initiation f 77.2 7.7 0.00026 36.6 8.6 60 114-177 23-88 (165)
128 2j37_W Signal recognition part 77.0 18 0.00061 41.3 12.9 57 98-155 106-162 (504)
129 3eaq_A Heat resistant RNA depe 76.2 9.6 0.00033 37.8 9.3 59 115-177 25-89 (212)
130 1g5t_A COB(I)alamin adenosyltr 75.5 4.1 0.00014 40.9 6.3 35 94-128 28-63 (196)
131 3syl_A Protein CBBX; photosynt 74.2 1.6 5.4E-05 45.5 3.0 15 97-111 71-85 (309)
132 2kjq_A DNAA-related protein; s 71.2 2.8 9.4E-05 39.7 3.6 18 94-111 35-54 (149)
133 3dmn_A Putative DNA helicase; 70.3 28 0.00097 33.4 10.8 76 410-495 40-115 (174)
134 1d2n_A N-ethylmaleimide-sensit 69.0 11 0.00038 38.4 8.0 16 97-112 68-83 (272)
135 3u61_B DNA polymerase accessor 68.4 2.8 9.6E-05 44.0 3.4 14 200-213 105-118 (324)
136 1byi_A Dethiobiotin synthase; 68.3 4 0.00014 40.3 4.3 31 97-127 6-36 (224)
137 2px0_A Flagellar biosynthesis 66.9 8.6 0.0003 40.6 6.8 38 94-131 104-144 (296)
138 2lnd_A De novo designed protei 65.2 19 0.00066 31.0 7.2 59 420-478 40-104 (112)
139 4a15_A XPD helicase, ATP-depen 64.7 15 0.00052 42.9 8.9 126 365-496 374-513 (620)
140 2z43_A DNA repair and recombin 64.6 16 0.00056 38.7 8.5 97 94-214 106-217 (324)
141 2ph1_A Nucleotide-binding prot 63.3 5.2 0.00018 40.9 4.1 33 97-129 23-55 (262)
142 2v1u_A Cell division control p 62.6 10 0.00034 40.1 6.3 15 97-111 48-62 (387)
143 3i32_A Heat resistant RNA depe 61.8 19 0.00064 38.1 8.2 62 112-177 19-86 (300)
144 1g3q_A MIND ATPase, cell divis 61.6 5.9 0.0002 39.3 4.1 34 97-130 7-40 (237)
145 3zq6_A Putative arsenical pump 61.4 6.5 0.00022 41.9 4.6 34 97-130 18-51 (324)
146 2woo_A ATPase GET3; tail-ancho 61.3 5.9 0.0002 42.4 4.2 34 97-130 23-56 (329)
147 4dzz_A Plasmid partitioning pr 61.1 5.9 0.0002 38.2 3.9 34 97-130 6-39 (206)
148 2p6n_A ATP-dependent RNA helic 60.3 20 0.0007 34.9 7.7 53 121-177 54-112 (191)
149 3vfd_A Spastin; ATPase, microt 60.2 3.9 0.00013 44.6 2.6 17 95-111 150-166 (389)
150 3te6_A Regulatory protein SIR3 60.0 4.8 0.00016 43.3 3.2 18 97-114 49-66 (318)
151 3b9p_A CG5977-PA, isoform A; A 59.8 8.1 0.00028 39.8 4.9 17 95-111 56-72 (297)
152 2chg_A Replication factor C sm 59.6 9 0.00031 36.6 4.9 15 97-111 42-56 (226)
153 3q9l_A Septum site-determining 59.6 6.6 0.00023 39.4 4.1 34 97-130 7-40 (260)
154 1hyq_A MIND, cell division inh 58.9 7.4 0.00025 39.3 4.3 32 97-128 7-38 (263)
155 3b9q_A Chloroplast SRP recepto 58.9 88 0.003 32.9 12.8 89 35-129 44-136 (302)
156 3ug7_A Arsenical pump-driving 58.4 7.5 0.00026 42.0 4.4 34 97-130 30-63 (349)
157 2jgn_A DBX, DDX3, ATP-dependen 58.0 20 0.0007 34.6 7.2 54 120-177 45-104 (185)
158 3bfv_A CAPA1, CAPB2, membrane 57.7 7.3 0.00025 40.5 4.1 33 97-129 87-119 (271)
159 1ofh_A ATP-dependent HSL prote 57.7 6.2 0.00021 40.6 3.5 16 96-111 53-68 (310)
160 3cio_A ETK, tyrosine-protein k 57.7 7.6 0.00026 40.9 4.3 33 97-129 109-141 (299)
161 3fkq_A NTRC-like two-domain pr 57.4 12 0.00042 40.5 6.0 34 97-130 148-181 (373)
162 1s2m_A Putative ATP-dependent 56.1 31 0.001 36.7 8.9 62 112-177 249-316 (400)
163 3g5j_A Putative ATP/GTP bindin 55.9 20 0.00068 32.1 6.3 38 430-467 87-126 (134)
164 1sxj_A Activator 1 95 kDa subu 55.9 17 0.00057 41.3 7.0 17 96-112 80-96 (516)
165 3ea0_A ATPase, para family; al 55.8 7.8 0.00027 38.5 3.8 34 97-130 9-43 (245)
166 1xti_A Probable ATP-dependent 55.4 31 0.0011 36.4 8.7 62 112-177 241-308 (391)
167 3hjh_A Transcription-repair-co 55.0 13 0.00043 42.3 5.8 55 431-495 382-436 (483)
168 3fht_A ATP-dependent RNA helic 54.9 28 0.00096 36.9 8.3 63 111-177 256-324 (412)
169 3end_A Light-independent proto 54.7 8.8 0.0003 40.0 4.2 32 97-129 46-77 (307)
170 2qby_A CDC6 homolog 1, cell di 54.5 24 0.0008 37.1 7.5 15 97-111 49-63 (386)
171 3la6_A Tyrosine-protein kinase 54.5 8.9 0.00031 40.3 4.1 33 97-129 97-129 (286)
172 3ec2_A DNA replication protein 54.5 9.3 0.00032 36.3 4.0 36 97-132 42-78 (180)
173 2xj4_A MIPZ; replication, cell 54.3 8.6 0.00029 39.9 4.0 33 97-129 9-41 (286)
174 1ihu_A Arsenical pump-driving 54.0 9.1 0.00031 44.1 4.5 34 97-130 12-45 (589)
175 3gk5_A Uncharacterized rhodane 53.9 20 0.00068 31.6 5.8 38 429-466 53-90 (108)
176 2gno_A DNA polymerase III, gam 52.9 21 0.00072 37.8 6.8 44 170-213 50-95 (305)
177 1oyw_A RECQ helicase, ATP-depe 52.9 32 0.0011 39.0 8.7 57 117-177 232-294 (523)
178 4a1f_A DNAB helicase, replicat 52.9 19 0.00066 38.9 6.6 71 57-129 3-82 (338)
179 3k9g_A PF-32 protein; ssgcid, 52.8 8.1 0.00028 39.3 3.4 33 97-130 32-64 (267)
180 1wcv_1 SOJ, segregation protei 52.3 6.9 0.00024 39.8 2.8 34 97-130 11-44 (257)
181 1fnn_A CDC6P, cell division co 52.3 15 0.00052 38.8 5.6 15 97-111 48-62 (389)
182 3hix_A ALR3790 protein; rhodan 52.3 21 0.00071 31.3 5.6 39 428-466 49-88 (106)
183 2zts_A Putative uncharacterize 52.1 16 0.00055 36.0 5.4 50 78-129 15-67 (251)
184 3bgw_A DNAB-like replicative h 52.0 35 0.0012 38.1 8.7 69 57-128 158-232 (444)
185 3bh0_A DNAB-like replicative h 51.0 16 0.00055 38.6 5.5 70 56-128 28-103 (315)
186 2woj_A ATPase GET3; tail-ancho 50.6 11 0.00039 40.7 4.3 34 97-130 22-57 (354)
187 2oze_A ORF delta'; para, walke 49.5 13 0.00043 38.5 4.3 31 100-130 44-74 (298)
188 1sxj_D Activator 1 41 kDa subu 49.4 18 0.00061 37.9 5.5 15 97-111 62-76 (353)
189 3pey_A ATP-dependent RNA helic 49.1 27 0.00092 36.7 6.9 60 114-177 236-301 (395)
190 2d7d_A Uvrabc system protein B 48.9 1.1E+02 0.0039 35.7 12.8 76 120-212 444-525 (661)
191 3iqw_A Tail-anchored protein t 48.8 11 0.00039 40.5 3.9 34 97-130 20-53 (334)
192 3pvs_A Replication-associated 48.4 8.5 0.00029 43.2 2.9 16 97-112 54-69 (447)
193 3e70_C DPA, signal recognition 48.3 1.4E+02 0.0047 31.9 12.3 58 94-153 128-188 (328)
194 2afh_E Nitrogenase iron protei 48.3 12 0.00041 38.6 3.9 28 100-127 9-36 (289)
195 3cwq_A Para family chromosome 48.1 13 0.00045 36.7 4.0 31 97-128 5-35 (209)
196 3foj_A Uncharacterized protein 47.8 18 0.0006 31.3 4.3 37 429-465 54-90 (100)
197 2r8r_A Sensor protein; KDPD, P 47.5 18 0.00061 37.1 4.9 33 97-129 10-42 (228)
198 1cp2_A CP2, nitrogenase iron p 47.5 12 0.00042 37.8 3.7 28 100-127 8-35 (269)
199 2w58_A DNAI, primosome compone 47.0 16 0.00055 35.2 4.4 34 97-130 58-91 (202)
200 2qby_B CDC6 homolog 3, cell di 46.9 35 0.0012 36.1 7.4 15 97-111 49-63 (384)
201 1gmx_A GLPE protein; transfera 46.6 27 0.00093 30.4 5.4 38 429-466 56-94 (108)
202 3eme_A Rhodanese-like domain p 46.3 17 0.00057 31.5 4.0 37 429-465 54-90 (103)
203 2og2_A Putative signal recogni 46.2 77 0.0026 34.4 10.1 61 65-129 129-193 (359)
204 2dr3_A UPF0273 protein PH0284; 45.8 19 0.00066 35.4 4.8 39 93-131 21-61 (247)
205 3kjh_A CO dehydrogenase/acetyl 45.3 8.6 0.00029 38.0 2.1 32 99-130 6-37 (254)
206 3crv_A XPD/RAD3 related DNA he 44.9 62 0.0021 36.8 9.5 76 417-496 378-456 (551)
207 2qgz_A Helicase loader, putati 44.3 18 0.00062 38.2 4.6 34 97-130 156-190 (308)
208 1hv8_A Putative ATP-dependent 44.0 44 0.0015 34.6 7.5 54 120-177 237-296 (367)
209 3iwh_A Rhodanese-like domain p 43.8 19 0.00066 31.8 4.0 36 429-464 54-89 (103)
210 3oiy_A Reverse gyrase helicase 43.4 45 0.0016 35.8 7.7 59 429-487 62-125 (414)
211 1tq1_A AT5G66040, senescence-a 43.2 22 0.00074 32.3 4.4 39 428-466 79-118 (129)
212 2v1x_A ATP-dependent DNA helic 42.8 44 0.0015 38.7 7.9 54 120-177 266-325 (591)
213 3vkw_A Replicase large subunit 42.7 21 0.00073 40.1 5.0 38 97-139 165-202 (446)
214 2j0s_A ATP-dependent RNA helic 42.5 50 0.0017 35.2 7.9 60 114-177 269-334 (410)
215 2b8t_A Thymidine kinase; deoxy 42.1 19 0.00066 36.5 4.2 35 97-131 16-50 (223)
216 4dik_A Flavoprotein; TM0755, e 41.9 90 0.0031 34.4 9.9 100 381-490 223-331 (410)
217 3ly5_A ATP-dependent RNA helic 41.8 98 0.0034 31.3 9.6 55 430-486 125-183 (262)
218 2z4s_A Chromosomal replication 41.8 43 0.0015 37.1 7.3 14 200-213 194-207 (440)
219 1c4o_A DNA nucleotide excision 41.7 1E+02 0.0035 36.1 10.9 75 120-211 438-518 (664)
220 1sxj_C Activator 1 40 kDa subu 41.5 18 0.00061 38.3 4.0 15 199-213 109-123 (340)
221 1sxj_B Activator 1 37 kDa subu 41.3 19 0.00063 37.1 4.0 15 97-111 46-60 (323)
222 3ber_A Probable ATP-dependent 41.3 89 0.003 31.3 9.1 55 431-487 111-169 (249)
223 2zpa_A Uncharacterized protein 41.1 10 0.00035 44.9 2.2 52 81-135 176-231 (671)
224 2fsx_A RV0390, COG0607: rhodan 40.7 33 0.0011 31.8 5.3 37 429-465 78-115 (148)
225 2i4i_A ATP-dependent RNA helic 40.6 60 0.002 34.5 8.1 54 120-177 275-334 (417)
226 2jtq_A Phage shock protein E; 40.4 60 0.0021 26.8 6.5 33 429-461 39-72 (85)
227 3io3_A DEHA2D07832P; chaperone 40.2 19 0.00067 38.9 4.1 34 97-130 22-57 (348)
228 1wv9_A Rhodanese homolog TT165 40.0 25 0.00086 29.9 4.0 36 429-465 52-87 (94)
229 3ilm_A ALR3790 protein; rhodan 39.4 38 0.0013 31.4 5.5 39 428-466 53-92 (141)
230 2k0z_A Uncharacterized protein 39.2 35 0.0012 29.9 5.0 38 429-466 54-91 (110)
231 2yjt_D ATP-dependent RNA helic 45.0 6.5 0.00022 37.4 0.0 54 120-177 29-88 (170)
232 1e9r_A Conjugal transfer prote 37.9 28 0.00094 38.2 4.9 41 94-135 53-95 (437)
233 1wp9_A ATP-dependent RNA helic 37.7 61 0.0021 34.6 7.6 54 120-177 360-427 (494)
234 2w0m_A SSO2452; RECA, SSPF, un 37.4 32 0.0011 33.3 4.8 38 93-130 21-60 (235)
235 3kyp_A Pfnaps, nucleosome asse 37.3 58 0.002 32.4 6.7 45 613-657 3-47 (193)
236 1tf5_A Preprotein translocase 36.5 76 0.0026 38.5 8.6 54 120-177 431-488 (844)
237 3igf_A ALL4481 protein; two-do 36.4 16 0.00053 40.2 2.6 33 97-129 6-38 (374)
238 3i5x_A ATP-dependent RNA helic 36.3 84 0.0029 35.3 8.8 57 120-177 338-400 (563)
239 1w5s_A Origin recognition comp 35.8 37 0.0013 36.2 5.5 14 200-213 138-151 (412)
240 3bos_A Putative DNA replicatio 35.7 31 0.0011 33.5 4.4 34 97-130 56-89 (242)
241 4ag6_A VIRB4 ATPase, type IV s 35.4 37 0.0013 36.6 5.4 52 97-156 39-90 (392)
242 4akg_A Glutathione S-transfera 35.1 79 0.0027 43.3 9.4 62 65-127 890-958 (2695)
243 2hhg_A Hypothetical protein RP 35.1 31 0.0011 31.4 4.0 38 429-466 84-122 (139)
244 3pg5_A Uncharacterized protein 35.0 17 0.0006 39.1 2.7 34 97-130 6-39 (361)
245 1o5z_A Folylpolyglutamate synt 34.2 91 0.0031 34.5 8.4 29 100-128 56-85 (442)
246 3flh_A Uncharacterized protein 34.1 33 0.0011 30.9 4.0 38 429-466 69-108 (124)
247 1yrb_A ATP(GTP)binding protein 33.9 31 0.0011 34.5 4.2 31 97-128 18-48 (262)
248 3sqw_A ATP-dependent RNA helic 33.5 1E+02 0.0035 35.0 9.0 57 120-177 287-349 (579)
249 1cr0_A DNA primase/helicase; R 32.4 43 0.0015 34.5 5.1 38 92-129 32-72 (296)
250 1w36_B RECB, exodeoxyribonucle 32.2 64 0.0022 40.5 7.4 88 94-189 16-141 (1180)
251 2cvh_A DNA repair and recombin 32.1 35 0.0012 32.9 4.1 36 93-131 18-55 (220)
252 3eiq_A Eukaryotic initiation f 31.9 38 0.0013 36.0 4.7 62 112-177 271-338 (414)
253 4gl2_A Interferon-induced heli 31.9 34 0.0012 39.6 4.7 57 121-177 400-472 (699)
254 2db3_A ATP-dependent RNA helic 31.3 1.1E+02 0.0036 33.5 8.3 53 121-177 300-358 (434)
255 1t6n_A Probable ATP-dependent 31.2 89 0.003 30.2 7.0 54 431-486 82-141 (220)
256 2xau_A PRE-mRNA-splicing facto 30.8 1.3E+02 0.0045 35.9 9.6 58 120-177 302-377 (773)
257 3d1p_A Putative thiosulfate su 30.7 45 0.0015 30.4 4.4 38 429-466 89-127 (139)
258 1qxn_A SUD, sulfide dehydrogen 30.1 36 0.0012 31.3 3.6 39 429-467 80-119 (137)
259 2j9r_A Thymidine kinase; TK1, 30.0 49 0.0017 33.5 4.8 38 94-131 27-66 (214)
260 3nhv_A BH2092 protein; alpha-b 29.9 41 0.0014 31.2 4.0 39 429-467 70-110 (144)
261 3ipz_A Monothiol glutaredoxin- 29.9 2.2E+02 0.0076 24.7 8.8 50 431-480 17-73 (109)
262 3ez2_A Plasmid partition prote 29.8 34 0.0012 37.1 4.0 34 97-130 113-152 (398)
263 1vee_A Proline-rich protein fa 29.4 50 0.0017 30.0 4.5 37 429-465 72-109 (134)
264 3n70_A Transport activator; si 29.3 19 0.00064 33.2 1.5 15 97-111 28-42 (145)
265 3sxu_A DNA polymerase III subu 28.5 45 0.0015 31.8 4.0 63 415-488 23-89 (150)
266 3fwy_A Light-independent proto 28.3 41 0.0014 35.7 4.2 29 100-128 55-83 (314)
267 3co5_A Putative two-component 28.0 21 0.00071 32.9 1.5 14 97-110 31-44 (143)
268 4ddu_A Reverse gyrase; topoiso 27.6 1.3E+02 0.0044 37.6 9.0 58 429-486 119-181 (1104)
269 1u94_A RECA protein, recombina 27.6 57 0.0019 35.3 5.2 37 94-130 62-100 (356)
270 3m1f_V VOPL, putative uncharac 27.3 24 0.00082 24.6 1.3 22 763-784 5-26 (31)
271 2ehv_A Hypothetical protein PH 26.2 58 0.002 31.9 4.6 39 92-130 27-68 (251)
272 3zyw_A Glutaredoxin-3; metal b 26.1 2.6E+02 0.0087 24.6 8.5 50 431-480 15-71 (111)
273 3dkp_A Probable ATP-dependent 26.1 42 0.0014 33.3 3.5 35 430-464 97-135 (245)
274 3of5_A Dethiobiotin synthetase 26.1 55 0.0019 32.9 4.5 31 97-127 9-39 (228)
275 2yhs_A FTSY, cell division pro 26.1 1.7E+02 0.006 33.2 9.0 37 92-128 290-328 (503)
276 1w78_A FOLC bifunctional prote 26.0 1.7E+02 0.0058 31.8 8.8 29 100-128 53-82 (422)
277 2oxc_A Probable ATP-dependent 25.9 1E+02 0.0034 30.2 6.3 55 430-487 91-150 (230)
278 2e50_A Protein SET; histone ch 25.7 1.2E+02 0.0041 30.8 6.8 50 612-661 32-82 (225)
279 1jbw_A Folylpolyglutamate synt 25.5 1.2E+02 0.004 33.3 7.3 29 101-129 44-73 (428)
280 4f3y_A DHPR, dihydrodipicolina 25.4 85 0.0029 32.7 5.8 60 434-494 76-135 (272)
281 2wul_A Glutaredoxin related pr 25.2 3.6E+02 0.012 24.4 9.4 53 432-484 20-82 (118)
282 3ez9_A Para; DNA binding, wing 25.2 32 0.0011 37.4 2.6 33 97-129 116-154 (403)
283 2zj8_A DNA helicase, putative 25.1 1.2E+02 0.0041 35.5 7.7 58 120-177 236-328 (720)
284 1w4r_A Thymidine kinase; type 25.0 56 0.0019 32.6 4.2 34 97-130 24-57 (195)
285 3cob_A Kinesin heavy chain-lik 24.4 39 0.0013 37.0 3.1 18 93-110 76-97 (369)
286 2zr9_A Protein RECA, recombina 24.4 68 0.0023 34.5 5.0 39 93-131 59-99 (349)
287 3t0q_A AGR253WP; kinesin, alph 24.3 44 0.0015 36.2 3.5 18 93-110 82-103 (349)
288 1ihu_A Arsenical pump-driving 24.0 53 0.0018 37.6 4.3 34 97-130 331-364 (589)
289 2pl3_A Probable ATP-dependent 23.9 1.6E+02 0.0056 28.6 7.4 53 430-486 96-153 (236)
290 1q57_A DNA primase/helicase; d 23.7 43 0.0015 37.6 3.4 38 92-129 239-279 (503)
291 3fgn_A Dethiobiotin synthetase 23.7 67 0.0023 33.0 4.6 44 84-127 12-61 (251)
292 3vkg_A Dynein heavy chain, cyt 23.6 72 0.0025 44.4 5.9 65 64-129 872-945 (3245)
293 3rc1_A Sugar 3-ketoreductase; 23.5 1.5E+02 0.0053 31.3 7.6 57 428-485 110-173 (350)
294 1t5c_A CENP-E protein, centrom 23.3 43 0.0015 36.4 3.1 14 97-110 82-95 (349)
295 2fz4_A DNA repair protein RAD2 23.2 1.4E+02 0.0047 29.8 6.8 45 431-486 133-178 (237)
296 2vvg_A Kinesin-2; motor protei 23.1 42 0.0014 36.5 3.0 18 93-110 86-107 (350)
297 2h58_A Kinesin-like protein KI 22.9 42 0.0014 36.1 3.0 18 93-110 77-98 (330)
298 1xp8_A RECA protein, recombina 22.6 60 0.002 35.3 4.2 39 93-131 72-112 (366)
299 3bfn_A Kinesin-like protein KI 22.5 46 0.0016 36.7 3.2 18 93-110 95-116 (388)
300 1jbk_A CLPB protein; beta barr 22.3 2E+02 0.0068 26.1 7.3 15 97-111 47-61 (195)
301 3fe2_A Probable ATP-dependent 22.2 1.5E+02 0.0053 29.1 6.9 54 430-486 101-159 (242)
302 1f9v_A Kinesin-like protein KA 22.2 54 0.0018 35.5 3.7 14 97-110 89-102 (347)
303 2yan_A Glutaredoxin-3; oxidore 22.0 1.4E+02 0.0046 25.7 5.7 49 432-480 17-72 (105)
304 2y8u_A Chitin deacetylase; hyd 21.9 31 0.0011 34.9 1.6 120 16-135 70-223 (230)
305 2p6r_A Afuhel308 helicase; pro 21.5 96 0.0033 36.2 5.9 58 120-177 241-330 (702)
306 3gbj_A KIF13B protein; kinesin 21.4 49 0.0017 36.0 3.1 18 93-110 89-110 (354)
307 2y65_A Kinesin, kinesin heavy 21.4 47 0.0016 36.2 3.0 18 93-110 81-102 (365)
308 3tbk_A RIG-I helicase domain; 21.1 2.1E+02 0.0071 31.4 8.3 58 120-177 388-460 (555)
309 4b4t_L 26S protease subunit RP 21.0 99 0.0034 34.6 5.6 48 62-111 186-233 (437)
310 1gm5_A RECG; helicase, replica 20.7 1.4E+02 0.0049 35.7 7.3 58 430-487 416-479 (780)
311 4etp_A Kinesin-like protein KA 20.7 49 0.0017 36.6 3.0 18 93-110 137-158 (403)
312 3gx8_A Monothiol glutaredoxin- 20.6 3E+02 0.01 24.5 7.9 49 432-480 16-74 (121)
313 1goj_A Kinesin, kinesin heavy 20.5 54 0.0019 35.6 3.2 18 93-110 77-98 (355)
314 2va8_A SSO2462, SKI2-type heli 20.4 1.6E+02 0.0054 34.3 7.5 58 120-177 251-346 (715)
315 3iuy_A Probable ATP-dependent 20.3 1.6E+02 0.0053 28.6 6.4 55 430-487 93-151 (228)
316 2fsf_A Preprotein translocase 20.2 1.2E+02 0.004 36.9 6.2 54 120-177 440-497 (853)
317 1vec_A ATP-dependent RNA helic 20.2 1.6E+02 0.0053 27.9 6.2 56 430-487 70-130 (206)
318 4a2q_A RIG-I, retinoic acid in 20.0 1.3E+02 0.0044 35.8 6.7 53 431-486 296-353 (797)
319 1n0w_A DNA repair protein RAD5 20.0 64 0.0022 31.5 3.4 38 93-130 22-67 (243)
320 2eyq_A TRCF, transcription-rep 20.0 1E+02 0.0034 38.7 5.9 66 418-496 375-440 (1151)
No 1
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=8.6e-213 Score=1858.54 Aligned_cols=804 Identities=47% Similarity=0.753 Sum_probs=758.4
Q ss_pred ChhhhHhhCCcchhHhHHH-HHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhcc
Q psy2371 1 MSFLTKIFGSRNQRLLKKY-QKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKM 79 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~ 79 (816)
|++++++|| +|+|.+|+| +++|++||++|++|++||| |+++|.+||+|+++|++||++||||||+||||++|++||
T Consensus 2 ~~~~~~~~g-~~~r~lk~~~~~~v~~In~le~~~~~LsD--L~~kT~efk~rl~~getLddlLpEAFAvvREAs~R~lG~ 78 (997)
T 2ipc_A 2 LGLLRRLFD-NNEREIARYYKQVVEPVNRLEAEVEKLPD--LAAAYRELKEKHEKGASLDELLPMAFALTRESAKRYLGM 78 (997)
T ss_dssp TTHHHHHHC-HHHHHHHHHHHHTHHHHHHTHHHHHTCSC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 368999999 899999999 9999999999999999999 999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCC
Q psy2371 80 RHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEI 159 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~ 159 (816)
+|||||++|+|+||+|+||+|+|||||||||+||+|+++|.|++|||||||+|||.||++||+++|+++|++|++++||+
T Consensus 79 ~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~ 158 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHAS 158 (997)
T ss_dssp CCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTC
T ss_pred CCcHHHHhhcccccCCceeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccc---cceEEEecchhhhhhhccCCcceeccccccchhhhHH
Q psy2371 160 SHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQR---KLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYK 236 (816)
Q Consensus 160 ~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r---~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~ 236 (816)
++++|+.+|+|||||||||+||||||+|+|+.+++.++++ +++|+||||||+||+|+|+||||||||.+..+.+|.
T Consensus 159 ~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~- 237 (997)
T 2ipc_A 159 TPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY- 237 (997)
T ss_dssp CHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH-
T ss_pred CHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHH-
Confidence 9999999999999999999999999999998888889999 999999999999999999999999999998899999
Q ss_pred HHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHH
Q psy2371 237 IINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHV 300 (816)
Q Consensus 237 ~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~ 300 (816)
.++.+++.|++..... .+.......||.+|++.+++.||+.|..++|++++ ++||+|++
T Consensus 238 ~~~~~i~~L~~~~~~~-----~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~ 312 (997)
T 2ipc_A 238 KMAEIAKKLERGLPAE-----PGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKE 312 (997)
T ss_dssp HHHHHHHHSCCCCCCC-----SSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccc-----cccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHH
Confidence 9999999997521000 00112224599999999999999999999998875 99999999
Q ss_pred HhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchH
Q psy2371 301 LYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEA 380 (816)
Q Consensus 301 l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~ 380 (816)
+|++|+||||+||+|+|||+||||+|+|||||+||||||||||||+|+++|+|+|+|||||||++|++|+||||||+||+
T Consensus 313 lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~ 392 (997)
T 2ipc_A 313 LYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEE 392 (997)
T ss_dssp SSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGH
T ss_pred HHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH--------
Q psy2371 381 YEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK-------- 452 (816)
Q Consensus 381 ~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~-------- 452 (816)
+||.++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.|++.||.||.+|+
T Consensus 393 ~Ef~~iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~ 472 (997)
T 2ipc_A 393 KEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPR 472 (997)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHH
T ss_pred HHHHHHhCCCEEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------hCCCCeEEEcCC
Q psy2371 453 --------------------------------------------------------------------KNNLPHSVLNAK 464 (816)
Q Consensus 453 --------------------------------------------------------------------~~gi~~~vLnak 464 (816)
+.||||+|||||
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK 552 (997)
T 2ipc_A 473 LEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAK 552 (997)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSS
T ss_pred hhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeecccc
Confidence 789999999999
Q ss_pred chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHH-hhh---cchh-------------h--------H---
Q psy2371 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKD-IKK---NISS-------------E--------V--- 516 (816)
Q Consensus 465 ~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~-~~~---~~~~-------------~--------~--- 516 (816)
+|++||+||++||++|+||||||||||||||+|||||++|++. ++. +|.. + +
T Consensus 553 ~he~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (997)
T 2ipc_A 553 HHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELG 632 (997)
T ss_dssp SHHHHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred chHHHHHHHHhcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhh
Confidence 9999999999999999999999999999999999999999962 321 1100 0 0
Q ss_pred ---HHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHH
Q psy2371 517 ---KKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKI 593 (816)
Q Consensus 517 ---~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~ 593 (816)
..-+.+..++..|++++++|.++||||||||++|+|+|+|+|++||||||||||+|+||||+||+||++||++++.+
T Consensus 633 ~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg~~~~~~ 712 (997)
T 2ipc_A 633 IREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIA 712 (997)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSSCTTHHH
T ss_pred hhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHHHHhhchHHHHH
Confidence 00134667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Q psy2371 594 VMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLES--KNISEIIKILRYDV 671 (816)
Q Consensus 594 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~--~~~~~~~~~~~~~~ 671 (816)
+|+++|+++++||+|+|++++|++||++||++||++||++++||||||.||++||++|++||++ +++.+.|.+|++++
T Consensus 713 ~m~~l~~~~~~~Ie~~~v~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~ 792 (997)
T 2ipc_A 713 MLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEET 792 (997)
T ss_dssp HHHHTCCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhhhccCCCCCccccHHHHHHHHHHhcCCC--chhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q psy2371 672 LIRLFSKYISLKKSDKEWDIIGLELILKKEFKLD--ISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFE 749 (816)
Q Consensus 672 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 749 (816)
++++|+.|+++...+++|++++|...+...|+.. .++..|.. .+.++++++|.+.+.+.|+.|++.++++.++++|
T Consensus 793 i~~~v~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~e 870 (997)
T 2ipc_A 793 VASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFAELRA--LKAEEAVERLVEAALKAYEAREAELSPPLMRAVE 870 (997)
T ss_dssp HHHHHHHHHSCSSCSSSCCHHHHHHHHHHSSCCCCSSHHHHHHH--SCSHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhcCCcCChhhcCHHHHHHHHHHhcCcccCCCHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999998888888999999999999988876 44444532 3458999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 750 RNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 750 r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|.++|++||..|+|||++||+||+|||||+|||+||+.|||+|||+||+.|+..|+.++++.|+++
T Consensus 871 r~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~dPl~eyk~e~~~~F~~m~~~i~~~~~~~l~~~ 936 (997)
T 2ipc_A 871 RFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRL 936 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999874
No 2
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.7e-209 Score=1800.92 Aligned_cols=742 Identities=48% Similarity=0.763 Sum_probs=720.0
Q ss_pred CcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccchhhhhhh
Q psy2371 10 SRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGG 89 (816)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~~~~ 89 (816)
++++|.+|+|+++|++||+++++|++|||++|+++|.+||+|+++|++||++||||||+||||++|++||+|||||++|+
T Consensus 5 ~~~~r~lk~~~~~v~~in~le~~~~~lsd~eL~~kt~~fk~rl~~ge~ldd~lpeafAvvREAa~R~lg~r~~dvQligg 84 (822)
T 3jux_A 5 DKNKRILKKYAKMVSKINQIESDLRSKKNSELIRLSMVLKEKVNSFEDADEHLFEAFALVREAARRTLGMRPFDVQVMGG 84 (822)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC------------
Q psy2371 90 IALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS------------ 157 (816)
Q Consensus 90 ~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~------------ 157 (816)
++||+|+||||+|||||||+|+||+|+|||+|++|||||||+|||+||++||+++|+||||+|+++++
T Consensus 85 ~~L~~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~ 164 (822)
T 3jux_A 85 IALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNP 164 (822)
T ss_dssp HHHHTTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSH
T ss_pred HHHhCCChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------CCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccc
Q psy2371 158 --------------------------------------EISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQR 199 (816)
Q Consensus 158 --------------------------------------~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r 199 (816)
++++++|+++|+||||||||++||||||||||+.+.+++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR 244 (822)
T 3jux_A 165 DLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQR 244 (822)
T ss_dssp HHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCC
T ss_pred hhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHhHHhhccCCHHHhccC
Confidence 678889999999999999999999999999999999999999
Q ss_pred cceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEe
Q psy2371 200 KLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFL 279 (816)
Q Consensus 200 ~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~l 279 (816)
+++||||||||||||||||||||||||++.++.+|. .++++++.|.+ +.||.+|++.|+++|
T Consensus 245 ~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~-~~~~~v~~l~~-----------------~~dy~vdek~~~v~l 306 (822)
T 3jux_A 245 GHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYR-RFAQIAKKFVK-----------------DKDFTVDEKARTIIL 306 (822)
T ss_dssp CCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHH-HHHHHTTSSCB-----------------TTTEEECCSSSCEEE
T ss_pred CCCeEEEecccceeecCCCCCceeeCCCCCccHHHH-HHHHHHHhcCc-----------------CCcEEEEcccCeEEE
Confidence 999999999999999999999999999999999999 99999999986 679999999999999
Q ss_pred chhhHHHHHHHHH----------------HHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccc
Q psy2371 280 TENGYEKYENILI----------------KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKE 343 (816)
Q Consensus 280 t~~g~~~~e~~l~----------------~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe 343 (816)
|+.|.+++|++|+ ++||+|+++|++|+||||+||+|+|||+||||+|+|||||+||||||||||
T Consensus 307 Te~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE 386 (822)
T 3jux_A 307 TEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKE 386 (822)
T ss_dssp CHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHc
Confidence 9999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred cceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHH
Q psy2371 344 NLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMD 423 (816)
Q Consensus 344 ~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~ 423 (816)
||+|+++++|+|+|||||||++|++|+||||||+++++||.++||++|+.||||+|++|+|++|.+|.+..+|+++|+++
T Consensus 387 gv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~ 466 (822)
T 3jux_A 387 GVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEE 466 (822)
T ss_dssp SSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHH
T ss_pred CCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchh
Q psy2371 424 IKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDS 503 (816)
Q Consensus 424 i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~ 503 (816)
+.+++..|+||||||+|++.|+.|+..|++.|++|++|||+++++|++++++||++|+||||||||||||||+||
T Consensus 467 I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg----- 541 (822)
T 3jux_A 467 IEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLG----- 541 (822)
T ss_dssp HHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCC-----
T ss_pred HHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhhCCcCccCC-----
Confidence 999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhh
Q psy2371 504 YIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~ 583 (816)
++|.++||+|||||++|+|+|+|+||+|||||||+||+|+||+|++|++|
T Consensus 542 ------------------------------~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 542 ------------------------------PGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp ------------------------------TTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred ------------------------------cchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 67999999999999999999999999999999999999999999999999
Q ss_pred hhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHH
Q psy2371 584 KFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEI 663 (816)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~ 663 (816)
++||++++.++|+++|+++++||+|++++++|++||+++|++||++||++++||+|||.||++||++|+++|+++++.+.
T Consensus 592 r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~~R~~iL~~~~~~~~ 671 (822)
T 3jux_A 592 RIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLEKDYDEY 671 (822)
T ss_dssp HHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHh----cCCCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 664 IKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKE----FKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKI 739 (816)
Q Consensus 664 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 739 (816)
|.+|++++++.+|+.|++ +++|++++|...+... |+...+. ..+.++++++|.+.+.+.|+.|++.
T Consensus 672 i~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~y~~k~~~ 741 (822)
T 3jux_A 672 LKDIFEDVVSTRVEEFCS----GKNWDIESLKNSLSFFPAGLFDLDEKQ------FSSSEELHDYLFNRLWEEYQRKKQE 741 (822)
T ss_dssp HHHHHHHHHHHHHHHHSS----TTCCCCHHHHHHTTTSCSCSCTTSSCC------CSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC----hhhccHHHHHHHHHHhhccccCccccc------cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 4689999999998876 3332211 1245889999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 740 LNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 740 ~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
++++ ++++||.++|++||.+|++||++||+||+|||||+|||+||+.|||+|||+||+.|+.+|+.++++.++++
T Consensus 742 ~~~~-~~~~er~i~L~~iD~~W~~hl~~md~Lr~~i~lr~y~q~dPl~eyk~e~~~~F~~m~~~i~~~~~~~~~~~ 816 (822)
T 3jux_A 742 IGED-YRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFDEMMRRINDTIANYVLRV 816 (822)
T ss_dssp HGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 99999999999999999999999999999999999999999999999999999999999999999999875
No 3
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3e-201 Score=1767.53 Aligned_cols=794 Identities=45% Similarity=0.741 Sum_probs=752.7
Q ss_pred hhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhccc---CCCcchhhHHHHHHHHHHHHHHhc
Q psy2371 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHS---GETLDSILPKAFSVCREASKRVLK 78 (816)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~---g~~ld~~l~ea~a~vrea~~R~lg 78 (816)
++++++||++++|.+|+|+++|++||+++++|++|||+||+++|.+||+|+++ |+++|++||||||+||||++|++|
T Consensus 30 ~~~~k~~g~~~~r~lk~~~~~v~~In~le~~~~~Lsd~eL~~kt~efk~rl~~~~~ge~ld~~lpeafA~vrEa~~R~lG 109 (922)
T 1nkt_A 30 DILSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDDLLPEAFAVAREAAWRVLD 109 (922)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCC
Q psy2371 79 MRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSE 158 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~ 158 (816)
|+|||||++|+|+||+|+||+|+|||||||||+||+|+++|.|++|||||||+|||.||++||+++|++|||+|++++||
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCCHHHHHHHHHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHhHhcCCEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHH
Q psy2371 159 ISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKII 238 (816)
Q Consensus 159 ~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i 238 (816)
+++++|+.+|+|||||||||+||||||+|+|..+.+.+++++++|+|||||||||+|+|+||||||||.+....+|. .+
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~-~i 268 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT-EF 268 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH-HH
T ss_pred CCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHH-HH
Confidence 99999999999999999999999999999998888889999999999999999999999999999999998888888 99
Q ss_pred hhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHh
Q psy2371 239 NPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLY 302 (816)
Q Consensus 239 ~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~ 302 (816)
+.|++.|++ +.||.+|++.|+++||+.|.+++|++++ .+||+|+.+|
T Consensus 269 ~~iv~~L~~-----------------~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~ 331 (922)
T 1nkt_A 269 ARLAPLMEK-----------------DVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELF 331 (922)
T ss_dssp HHHHHHSCB-----------------TTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcc-----------------cccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHh
Confidence 999999986 5699999999999999999999999885 7899999999
Q ss_pred ccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHH
Q psy2371 303 HKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYE 382 (816)
Q Consensus 303 ~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e 382 (816)
++|+||||+||+|+|||++|||+|+|||||+|||||||+||+|+|+++++|+++|||||||++|++|+||||||.||++|
T Consensus 332 ~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~E 411 (922)
T 1nkt_A 332 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAE 411 (922)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEc
Q psy2371 383 FQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462 (816)
Q Consensus 383 ~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLn 462 (816)
|.++||++|+.||||+|++|+|++|++|.+..+|+++|++++.++|..||||||||+|++.||.||..|++.||+|++||
T Consensus 412 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLn 491 (922)
T 1nkt_A 412 LHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLN 491 (922)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHH-Hhhh---cchhhH-----HHHHHHHHHHHHHHhhh
Q psy2371 463 AKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIK-DIKK---NISSEV-----KKKNKIKKLKNEWMLLH 533 (816)
Q Consensus 463 ak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~-~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~ 533 (816)
|+++++|++|+++||++|+||||||||||||||+++|++++|++ ++.. +|...+ .+.+.+.++++.|++++
T Consensus 492 ak~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 492 AKYHEQEATIIAVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp SSCHHHHHHHHHTTTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CChhHHHHHHHHhcCCCCeEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999986 3322 111111 12345778999999999
Q ss_pred hhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHH
Q psy2371 534 DKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASY 613 (816)
Q Consensus 534 ~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 613 (816)
++|.++||+||||||+|+|+|+|+||+|||||||+||+|+||||++|++|++||++++.++|+++++++++||+++|+++
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~ 651 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTR 651 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-hhccCCCCCccccHH
Q psy2371 614 SIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFS-KYISLKKSDKEWDII 692 (816)
Q Consensus 614 ~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~ 692 (816)
+|++||+++|++||++||++++||||||+||++||++|+++|+++++.+.|.+|++++++++|+ .| +...+++|+++
T Consensus 652 ~ie~aQkkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~~~~~~~i~~~~~~~~~~~v~~~~--~~~~~~~w~~~ 729 (922)
T 1nkt_A 652 AIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEGENLKDQALDMVRDVITAYVDGAT--GEGYAEDWDLD 729 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTT--SSSCSSCSCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc--ccCCchhcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 66 44567899999
Q ss_pred HHHHHHHHhcCCCchhHHHhhh-------cCCHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhHHH
Q psy2371 693 GLELILKKEFKLDISFKIFFKK-------KYTIKDFFIKILYTFDKKYENKIKIL----NNKKFLNFERNIILQSIDKYW 761 (816)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~r~~~L~~iD~~W 761 (816)
+|...+...|+...++..|... ..+.++++++|.+.+.+.|+.|++.+ +++.++++||.++|++||..|
T Consensus 730 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~~er~~~L~~iD~~W 809 (922)
T 1nkt_A 730 ALWTALKTLYPVGITADSLTRKDHEFERDDLTREELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVIDRKW 809 (922)
T ss_dssp HHHHHHHHHSCCCSCTTTTC---------------CHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988776555444321 12347899999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 762 IEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 762 ~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
+|||++||+||+|||||+|||+||+.|||+|||+||+.|+.+|+.++++.|+++
T Consensus 810 ~eHl~~md~Lr~~i~lr~y~q~dPl~eyk~e~~~~F~~m~~~i~~~~~~~l~~~ 863 (922)
T 1nkt_A 810 REHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMFMAMLDGMKEESVGFLFNV 863 (922)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999874
No 4
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.2e-197 Score=1729.22 Aligned_cols=796 Identities=53% Similarity=0.854 Sum_probs=656.4
Q ss_pred hhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccccchhhh
Q psy2371 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQL 86 (816)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p~~VQ~ 86 (816)
+||++++|.+|+|+++|++||++|++|++|||++|+++|.+||+|+++|+++|+++|||||+||||++|++|++|||||+
T Consensus 1 ~~g~~~~r~lk~~~~~v~~in~le~~~~~lsd~eL~~kt~~fk~rl~~g~~ld~~lpeafA~vrea~~R~lg~~p~~VQ~ 80 (853)
T 2fsf_A 1 VFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQL 80 (853)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHcCCCCChHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHh
Q psy2371 87 IGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKK 166 (816)
Q Consensus 87 ~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~ 166 (816)
+|+|+|++|+||+|+||||||+||+||++++++.|++|||+|||+|||.||++||+++++++|++|++++||+++++|+.
T Consensus 81 ~~i~~ll~G~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~ 160 (853)
T 2fsf_A 81 LGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKRE 160 (853)
T ss_dssp HHHHHHHSSEEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH
T ss_pred hhcccccCCeeeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhcc
Q psy2371 167 SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLV 246 (816)
Q Consensus 167 ~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~ 246 (816)
+|+|||+|||||+||||||+|+|..+++.+++++++|+||||||+||+|+|+||||||||.+..+.+|. .++.|++.|+
T Consensus 161 ~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~-~i~~iv~~L~ 239 (853)
T 2fsf_A 161 AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK-RVNKIIPHLI 239 (853)
T ss_dssp HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHH-HHHHHHHhch
Confidence 999999999999999999999998878889999999999999999999999999999999998888888 9999999997
Q ss_pred chhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH---------H--------------HHHHHHHHHhc
Q psy2371 247 PEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL---------I--------------KMALRAHVLYH 303 (816)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l---------~--------------~~Al~A~~l~~ 303 (816)
+..+... .......||.+|++.|+++||+.|.+++++++ . .+||+|+.+|+
T Consensus 240 ~~~~~~~------~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~ 313 (853)
T 2fsf_A 240 RQEKEDS------ETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFT 313 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcccc------ccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhh
Confidence 5211000 01122459999999999999999999998877 1 57889999999
Q ss_pred cCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHH
Q psy2371 304 KNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEF 383 (816)
Q Consensus 304 ~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~ 383 (816)
+|+||+|+||+|+|||++|||+|+|||||+|||||||+||+|+|+++++|+++|||||||++|++|+||||||+|+++||
T Consensus 314 ~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef 393 (853)
T 2fsf_A 314 RDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 393 (853)
T ss_dssp -------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHH
T ss_pred cCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcC
Q psy2371 384 QEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463 (816)
Q Consensus 384 ~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLna 463 (816)
.++||++|+.||||+|++|+|++|++|.+..+|+++|++++.+++..||||||||+|++.||.||..|++.||+|++|||
T Consensus 394 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLna 473 (853)
T 2fsf_A 394 SSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 473 (853)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCT
T ss_pred HHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceE
Q psy2371 464 KQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLH 543 (816)
Q Consensus 464 k~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLh 543 (816)
+++++|++|+++||++|+||||||||||||||+++|||++++..+...| ++.+.++++.|++++++|.++||+|
T Consensus 474 k~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~V~~~GGl~ 547 (853)
T 2fsf_A 474 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPT------AEQIEKIKADWQVRHDAVLEAGGLH 547 (853)
T ss_dssp TCHHHHHHHHHTTTSTTCEEEEESCCSSCSCCCTTCCHHHHHHHCSSCC------SSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred ChhHHHHHHHHhcCCCCeEEEecccccCCcCccCCCchHhhhhhcccch------hHHHHHHHHHhhhhhhHHHhcCCcE
Confidence 9999999999999999999999999999999999999999997664332 2357779999999999999999999
Q ss_pred EEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHH
Q psy2371 544 IIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIE 623 (816)
Q Consensus 544 VI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e 623 (816)
|||||+|+|+|+|+||+|||||||+||+|+||+|++|++|++||++++.++|++++++++++|+++++++++++||+++|
T Consensus 548 VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq~~ve 627 (853)
T 2fsf_A 548 IIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVE 627 (853)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcC
Q psy2371 624 LRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFK 703 (816)
Q Consensus 624 ~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~ 703 (816)
++||++||++++||||||+||++||++|+++|+++++.+.|.+|++++++++|+.|+++...+++|++++|...+...|+
T Consensus 628 ~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~~ 707 (853)
T 2fsf_A 628 SRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFD 707 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHTTSCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCccccchhhcHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999888778889999999999999988
Q ss_pred CCchhHHHhhh--cCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccc
Q psy2371 704 LDISFKIFFKK--KYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYA 781 (816)
Q Consensus 704 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~ 781 (816)
...++..|... ..+.++++++|.+.+.+.|+.|.+.++++.++++||.++|++||..|+|||++||+||+|||||+||
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~er~~~L~~iD~~W~~hl~~md~Lr~~i~lr~y~ 787 (853)
T 2fsf_A 708 LDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYA 787 (853)
T ss_dssp CCCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCS
T ss_pred CCCCHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 77666666432 1355899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 782 QKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 782 QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
|+||+.|||+|||+||+.|+.+|+.++++.|+++
T Consensus 788 q~dP~~ey~~e~~~~F~~m~~~i~~~~~~~l~~~ 821 (853)
T 2fsf_A 788 QKDPKQEYKRESFSMFAAMLESLKYEVISTLSKV 821 (853)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999874
No 5
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=9.3e-189 Score=1663.24 Aligned_cols=759 Identities=47% Similarity=0.792 Sum_probs=725.9
Q ss_pred ChhhhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhccc
Q psy2371 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMR 80 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~ 80 (816)
|++++++|| +++|.+|+|+++|++||++++++++|||+||+++|.+||+++++|+++|+++|+|||++|||++|++|++
T Consensus 5 ~~~~~~~~~-~~~r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~ld~~l~ea~a~vrea~~r~lG~~ 83 (844)
T 1tf5_A 5 LGILNKMFD-PTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVREASRRVTGMF 83 (844)
T ss_dssp HHHHHC-------CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcC-CchHHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHcCCC
Confidence 357899999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC
Q psy2371 81 HFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~ 160 (816)
|||||++|+|+||+|+||+|+|||||||||+||+|+++|.|++|||||||||||.||++||+++|+++|++|++++||++
T Consensus 84 pt~VQ~~~ip~ll~G~Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~ 163 (844)
T 1tf5_A 84 PFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMS 163 (844)
T ss_dssp CCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSC
T ss_pred CcHHHHHhhHHHhCCCEEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHHHHhh
Q psy2371 161 HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240 (816)
Q Consensus 161 ~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~ 240 (816)
+++|+.+|+||||||||||||||||+|+|..+.+.+++++++|+||||||+||+|+++||||||||.+.++.+|. .++.
T Consensus 164 ~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~-~i~~ 242 (844)
T 1tf5_A 164 KDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV-QANA 242 (844)
T ss_dssp HHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH-HHHH
T ss_pred HHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHH-HHHH
Confidence 999999999999999999999999999998777789999999999999999999999999999999988888888 9999
Q ss_pred HhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH----------------HHHHHHHHHhcc
Q psy2371 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI----------------KMALRAHVLYHK 304 (816)
Q Consensus 241 iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~----------------~~Al~A~~l~~~ 304 (816)
|++.|++ +.||.+|++.|+++||+.|.++++++++ .+|++|+.+|++
T Consensus 243 iv~~l~~-----------------~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~ 305 (844)
T 1tf5_A 243 FVRTLKA-----------------EKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQK 305 (844)
T ss_dssp HHTTCCS-----------------SSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCB
T ss_pred HHHhCcc-----------------cccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhc
Confidence 9999975 4699999999999999999999988764 678999999999
Q ss_pred CcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHH
Q psy2371 305 NKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384 (816)
Q Consensus 305 ~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~ 384 (816)
|+||+|.||+|+|||++|||+|+|||||+|||||+|+||+|+|+++++|+++||+||||++|++++||||||.|+++||.
T Consensus 306 d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~ 385 (844)
T 1tf5_A 306 DVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFR 385 (844)
T ss_dssp TTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred CCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 385 EIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 385 ~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
++|+++|+.||||+|++|.|++|++|.+..+|+.+|++++.+++..|+||||||+|++.|+.|+..|++.|++|.+|||+
T Consensus 386 ~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~ 465 (844)
T 1tf5_A 386 NIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465 (844)
T ss_dssp HHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS
T ss_pred HHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q psy2371 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHI 544 (816)
Q Consensus 465 ~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhV 544 (816)
++++|++++++||++|+||||||||||||||++| ++|.++||+||
T Consensus 466 ~~~rEr~ii~~ag~~g~VlIATdmAgRG~DI~l~-----------------------------------~~V~~~ggl~V 510 (844)
T 1tf5_A 466 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-----------------------------------EGVKELGGLAV 510 (844)
T ss_dssp CHHHHHHHHTTTTSTTCEEEEETTSSTTCCCCCC-----------------------------------TTSGGGTSEEE
T ss_pred ccHHHHHHHHHcCCCCeEEEeCCccccCcCcccc-----------------------------------chhhhcCCcEE
Confidence 9999999999999999999999999999999998 78999999999
Q ss_pred EEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCCCCCCcccccHHHHHHHHHHHHHHH
Q psy2371 545 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIEL 624 (816)
Q Consensus 545 I~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~ 624 (816)
||||+|+|+|+|+||+|||||||+||+|+||+|++|++|++||++++..+|++++++++++|+++++++++++||+++|+
T Consensus 511 In~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq~~ve~ 590 (844)
T 1tf5_A 511 VGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEG 590 (844)
T ss_dssp EESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHHHHTCCSSSCBCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccHHHHHHHHHHhcCC
Q psy2371 625 RNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704 (816)
Q Consensus 625 ~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 704 (816)
.||++||++++||||||.||++||++|+++|+++++.+.|.+|++++++++|+.|+++...+++|++++|...+...|+.
T Consensus 591 ~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~~~ 670 (844)
T 1tf5_A 591 NNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 670 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHTSCSSCCTTCSSCCCHHHHHHTTTSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCCcCCcccccHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999998887778899999999999988866
Q ss_pred C--chhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccc
Q psy2371 705 D--ISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQ 782 (816)
Q Consensus 705 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~Q 782 (816)
. .+...|.. .+.++++++|.+.+.+.|+.|.+.++++.++++||.++|++||..|+|||++||+||+|||||+|||
T Consensus 671 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~D~~W~~hl~~m~~lr~~i~lr~~~q 748 (844)
T 1tf5_A 671 EGALEKSDIFG--KEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQ 748 (844)
T ss_dssp TTSCSSSSCSS--CCHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSCSS
T ss_pred cCCCCHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 2 22222321 3458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371 783 KDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815 (816)
Q Consensus 783 kdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~ 815 (816)
+||+.|||+|||+||+.|+.+|+.++++.|+++
T Consensus 749 ~dp~~ey~~e~~~~f~~m~~~i~~~~~~~l~~~ 781 (844)
T 1tf5_A 749 TNPLREYQMEGFAMFEHMIESIEDEVAKFVMKA 781 (844)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999863
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-40 Score=373.62 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=242.7
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc--------CCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS--------GQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~--------g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
.|+ .|+|+|..+++.+++|+ |+.++||+|||++|++|++...+. +..++|++||++||.|.++++..+.
T Consensus 74 ~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 565 59999999999999988 999999999999999999976653 4579999999999999999999999
Q ss_pred hhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCccee
Q psy2371 146 NWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLII 223 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tplii 223 (816)
...++++++++||.+...+ ....+|+|+++|||+| .|++... ...++.+.++||||||.|+ |.+
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~g------ 219 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL-LDFVDRT------FITFEDTRFVVLDEADRML-DMG------ 219 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHH-HHHHHTT------SCCCTTCCEEEEETHHHHT-STT------
T ss_pred ccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHH-HHHHHhC------CcccccCCeEEEccHhhhh-ccC------
Confidence 9999999999999885433 3345799999999998 5555432 2446789999999999998 543
Q ss_pred ccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhc
Q psy2371 224 SGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYH 303 (816)
Q Consensus 224 sg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~ 303 (816)
|.+.+..++..+.. ....+.++||++....++++. ..++.
T Consensus 220 ----------f~~~~~~i~~~~~~-----------------------~~~~q~l~~SAT~~~~~~~~~-------~~~l~ 259 (434)
T 2db3_A 220 ----------FSEDMRRIMTHVTM-----------------------RPEHQTLMFSATFPEEIQRMA-------GEFLK 259 (434)
T ss_dssp ----------THHHHHHHHHCTTS-----------------------CSSCEEEEEESCCCHHHHHHH-------HTTCS
T ss_pred ----------cHHHHHHHHHhcCC-----------------------CCCceEEEEeccCCHHHHHHH-------HHhcc
Confidence 34466777766421 013567888999877766654 12221
Q ss_pred cCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHH
Q psy2371 304 KNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEF 383 (816)
Q Consensus 304 ~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~ 383 (816)
+|+.. .++. ...+...+.
T Consensus 260 ---~~~~i-----~~~~-----------------------------~~~~~~~i~------------------------- 277 (434)
T 2db3_A 260 ---NYVFV-----AIGI-----------------------------VGGACSDVK------------------------- 277 (434)
T ss_dssp ---SCEEE-----EESS-----------------------------TTCCCTTEE-------------------------
T ss_pred ---CCEEE-----Eecc-----------------------------ccccccccc-------------------------
Confidence 12110 0000 000000010
Q ss_pred HHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcC
Q psy2371 384 QEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463 (816)
Q Consensus 384 ~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLna 463 (816)
...+.....+|...+++.+.+. +.++||||+|+..++.+++.|.+.|+++..+||
T Consensus 278 ----------------------~~~~~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 278 ----------------------QTIYEVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp ----------------------EEEEECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred ----------------------eEEEEeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 0122334456777777776553 234999999999999999999999999999999
Q ss_pred Cch--HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy2371 464 KQH--KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGG 541 (816)
Q Consensus 464 k~~--~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 541 (816)
+.. +|+..+-.+......|+||||+|+||+|| |+|.
T Consensus 333 ~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi--------------------------------------~~v~---- 370 (434)
T 2db3_A 333 DRLQSQREQALRDFKNGSMKVLIATSVASRGLDI--------------------------------------KNIK---- 370 (434)
T ss_dssp TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC--------------------------------------TTCC----
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc--------------------------------------ccCC----
Confidence 854 45555555554456899999999999999 5676
Q ss_pred eEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 542 LHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 542 LhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|||+++.|.|...|.||+|||||.|++|.+..|++.+++
T Consensus 371 -~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~ 409 (434)
T 2db3_A 371 -HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 409 (434)
T ss_dssp -EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTC
T ss_pred -EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecccc
Confidence 999999999999999999999999999999999986543
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=335.94 Aligned_cols=325 Identities=18% Similarity=0.150 Sum_probs=234.4
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---------------------CCcEEEEeCcHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---------------------GQGVHIVTISDY 132 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---------------------g~~V~VvT~n~y 132 (816)
+|+ .|+|+|..+++.+.+|+ |+.++||+|||++|++|++...+. +..++|++||++
T Consensus 33 ~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 565 89999999999998887 999999999999999999866542 245999999999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchh
Q psy2371 133 LAKRDAEWMSVLYNWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210 (816)
Q Consensus 133 LA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaD 210 (816)
||.|.++.+..+...++++++++.|+.+.... ....+++|+|+||++| .+++.. .......+.++||||||
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~------~~~~~~~~~~iViDEah 185 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL-VDMMER------GKIGLDFCKYLVLDEAD 185 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH-HHHHHT------TSBCCTTCCEEEESSHH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH-HHHHHc------CCcChhhCcEEEEEChh
Confidence 99999999999999999999999999875433 3334789999999998 344432 23345788999999999
Q ss_pred hhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHH
Q psy2371 211 SILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENI 290 (816)
Q Consensus 211 s~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~ 290 (816)
.++ +.+ |...+..++..+... . ....+.+.+|++....++.+
T Consensus 186 ~~~-~~~----------------~~~~~~~i~~~~~~~----------------~-----~~~~~~i~~SAT~~~~~~~~ 227 (417)
T 2i4i_A 186 RML-DMG----------------FEPQIRRIVEQDTMP----------------P-----KGVRHTMMFSATFPKEIQML 227 (417)
T ss_dssp HHH-HTT----------------CHHHHHHHHTSSSCC----------------C-----BTTBEEEEEESCCCHHHHHH
T ss_pred Hhh-ccC----------------cHHHHHHHHHhccCC----------------C-----cCCcEEEEEEEeCCHHHHHH
Confidence 988 432 233555555532110 0 01245677888876655554
Q ss_pred HHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchh
Q psy2371 291 LIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKIS 370 (816)
Q Consensus 291 l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~ 370 (816)
+ ..++.. ++. +.+ .....+...+.
T Consensus 228 ~-------~~~~~~---~~~-----~~~-----------------------------~~~~~~~~~i~------------ 251 (417)
T 2i4i_A 228 A-------RDFLDE---YIF-----LAV-----------------------------GRVGSTSENIT------------ 251 (417)
T ss_dssp H-------HHHCSS---CEE-----EEE-----------------------------C----CCSSEE------------
T ss_pred H-------HHHcCC---CEE-----EEe-----------------------------CCCCCCccCce------------
Confidence 3 122211 100 000 00000000000
Q ss_pred cccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHH
Q psy2371 371 GMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNI 450 (816)
Q Consensus 371 GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~ 450 (816)
...++.....|...+.+.+.. ...+.++||||+|++.++.+++.
T Consensus 252 -----------------------------------~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~ 295 (417)
T 2i4i_A 252 -----------------------------------QKVVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDF 295 (417)
T ss_dssp -----------------------------------EEEEECCGGGHHHHHHHHHHT-CCTTCEEEEECSSHHHHHHHHHH
T ss_pred -----------------------------------EEEEEeccHhHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHH
Confidence 012334455677777776654 34677899999999999999999
Q ss_pred HHhCCCCeEEEcCCchHHHH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHH
Q psy2371 451 LKKNNLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNE 528 (816)
Q Consensus 451 L~~~gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (816)
|++.|+++..+||+....++ .+-.+......|+|||++++||+||
T Consensus 296 L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi--------------------------------- 342 (417)
T 2i4i_A 296 LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI--------------------------------- 342 (417)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCC---------------------------------
T ss_pred HHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc---------------------------------
Confidence 99999999999999654444 3434443456899999999999999
Q ss_pred HHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 529 WMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 529 ~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|.|. +||+++.|.|...|.||+||+||.|.+|.+.+|++.+|.
T Consensus 343 -----p~v~-----~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 343 -----SNVK-----HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp -----CCEE-----EEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred -----ccCC-----EEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 5565 999999999999999999999999999999999987773
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.2e-37 Score=336.97 Aligned_cols=320 Identities=19% Similarity=0.248 Sum_probs=234.4
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.|+. |+|+|..+++.+++|+ |+.++||+|||++|++|++.... .+..++|++||++||.|.++.+..+...+++
T Consensus 55 ~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 5764 9999999999998887 99999999999999999985432 4668999999999999999999999999999
Q ss_pred eEEEecCCCCHHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccc
Q psy2371 151 SIGVNSSEISHSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIK 228 (816)
Q Consensus 151 sv~~i~~~~~~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~ 228 (816)
+++...|+.+... +...++++|+++||+++ +++++.. ....+.+.++||||||.++ +.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l-~~~l~~~------~~~~~~~~~vViDEah~~~-~~~----------- 195 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV-FDMIRRR------SLRTRAIKMLVLDEADEML-NKG----------- 195 (410)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHTT------SSCCTTCCEEEEETHHHHT-STT-----------
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEcCHHHH-HHHHHhC------CccHhheeEEEEccHHHHH-hhh-----------
Confidence 9999999987543 34446899999999998 5555432 2345679999999999988 432
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcce
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
|...+..+...++. ..+.+.+|++....+.+++ ...+..
T Consensus 196 -----~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~~---- 234 (410)
T 2j0s_A 196 -----FKEQIYDVYRYLPP-------------------------ATQVVLISATLPHEILEMT-------NKFMTD---- 234 (410)
T ss_dssp -----THHHHHHHHTTSCT-------------------------TCEEEEEESCCCHHHHTTG-------GGTCSS----
T ss_pred -----hHHHHHHHHHhCcc-------------------------CceEEEEEcCCCHHHHHHH-------HHHcCC----
Confidence 23366666666653 2466788888655443322 011110
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
.+.+ .+.....+...+. +
T Consensus 235 -----~~~~----------------------------~~~~~~~~~~~~~-~---------------------------- 252 (410)
T 2j0s_A 235 -----PIRI----------------------------LVKRDELTLEGIK-Q---------------------------- 252 (410)
T ss_dssp -----CEEE----------------------------CCCGGGCSCTTEE-E----------------------------
T ss_pred -----CEEE----------------------------EecCccccCCCce-E----------------------------
Confidence 0000 0000000000000 0
Q ss_pred CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHH
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKL 468 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~r 468 (816)
.++.+ .....|...+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+||+....
T Consensus 253 -~~~~~----------------~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 253 -FFVAV----------------EREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 313 (410)
T ss_dssp -EEEEE----------------SSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred -EEEEe----------------CcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHH
Confidence 00111 12334666666665543 345899999999999999999999999999999996544
Q ss_pred HH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE
Q psy2371 469 EA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG 546 (816)
Q Consensus 469 Ea--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~ 546 (816)
++ .+-.+......|+|||++++||+|| |.|. +||+
T Consensus 314 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi--------------------------------------~~v~-----~Vi~ 350 (410)
T 2j0s_A 314 ERESIMKEFRSGASRVLISTDVWARGLDV--------------------------------------PQVS-----LIIN 350 (410)
T ss_dssp HHHHHHHHHHHTSSCEEEECGGGSSSCCC--------------------------------------TTEE-----EEEE
T ss_pred HHHHHHHHHHCCCCCEEEECChhhCcCCc--------------------------------------ccCC-----EEEE
Confidence 44 3333433356899999999999999 5665 9999
Q ss_pred ecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 547 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 547 te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
++.|.|...|.||+||+||.|++|.+..|++.+|
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred ECCCCCHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 9999999999999999999999999999998776
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.2e-35 Score=318.48 Aligned_cols=321 Identities=17% Similarity=0.178 Sum_probs=230.1
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---CCcEEEEeCcHHHHHHHHHHHHHHhhhc-C
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---GQGVHIVTISDYLAKRDAEWMSVLYNWL-G 149 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-g 149 (816)
+|+. |+|.|..+++.+++|+ ++.++||+|||++|++|++..... +..++|++||++|+.|.++++..+...+ +
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 5775 9999999999988887 999999999999999999854332 4579999999999999999999998887 8
Q ss_pred CeEEEecCCCCHHHHHh---hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccc
Q psy2371 150 LSIGVNSSEISHSLKKK---SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~---~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~ 226 (816)
++++++.|+.+...... ...++|+++||+.+ .+++.. .......+.++||||||.++-+..
T Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~------~~~~~~~~~~vViDEaH~~~~~~~--------- 169 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN------KSLNLKHIKHFILDECDKMLEQLD--------- 169 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT------TSSCCTTCSEEEECSHHHHTSSHH---------
T ss_pred eEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHH-HHHHHc------CCccccccCEEEEeCHHHHhhccc---------
Confidence 99999999987543322 23579999999997 333332 123457899999999999872211
Q ss_pred cccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCc
Q psy2371 227 IKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNK 306 (816)
Q Consensus 227 ~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~ 306 (816)
|...+..+...++. ..+.+.+|++....+..++ ...+...
T Consensus 170 -------~~~~~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~~~- 209 (391)
T 1xti_A 170 -------MRRDVQEIFRMTPH-------------------------EKQVMMFSATLSKEIRPVC-------RKFMQDP- 209 (391)
T ss_dssp -------HHHHHHHHHHTSCS-------------------------SSEEEEEESSCCSTHHHHH-------HHHCSSC-
T ss_pred -------hHHHHHHHHhhCCC-------------------------CceEEEEEeeCCHHHHHHH-------HHHcCCC-
Confidence 22244444443332 2344556665433332222 0111100
Q ss_pred ceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHH
Q psy2371 307 HYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEI 386 (816)
Q Consensus 307 dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~ 386 (816)
T Consensus 210 -------------------------------------------------------------------------------- 209 (391)
T 1xti_A 210 -------------------------------------------------------------------------------- 209 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCeEEEcCCCCc-cccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 387 YKLETITVPPNKI-NKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 387 Y~l~vv~IPt~~p-~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
..+.++...+ .........+.....+|...+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+||+.
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 284 (391)
T 1xti_A 210 ---MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 284 (391)
T ss_dssp ---EEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred ---eEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 0011111110 0000111223344566777777766543 567899999999999999999999999999999986
Q ss_pred hHHH--HHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceE
Q psy2371 466 HKLE--AQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLH 543 (816)
Q Consensus 466 ~~rE--a~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLh 543 (816)
...+ ..+-.+......|+|||+++++|+|| |.+. +
T Consensus 285 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi--------------------------------------~~~~-----~ 321 (391)
T 1xti_A 285 PQEERLSRYQQFKDFQRRILVATNLFGRGMDI--------------------------------------ERVN-----I 321 (391)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC--------------------------------------TTEE-----E
T ss_pred CHHHHHHHHHHHhcCCCcEEEECChhhcCCCc--------------------------------------ccCC-----E
Confidence 5444 34444444456899999999999999 5565 9
Q ss_pred EEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 544 IIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 544 VI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
||+++.|.|...|.||+||+||.|++|.+..|++.+|+
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 99999999999999999999999999999999987764
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=322.73 Aligned_cols=319 Identities=18% Similarity=0.199 Sum_probs=218.9
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.|+ .|+|+|..++..+.+|+ |+.++||+|||++|++|++.... .+..++|++|+++||.|.++++..+...+|+
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 455 79999999999998887 99999999999999999996543 4567999999999999999999999999999
Q ss_pred eEEEecCCCCHHHHH---hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 151 SIGVNSSEISHSLKK---KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 151 sv~~i~~~~~~~~r~---~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
.++...++.+..... ....++|+|+||+.| ++++... ......+.++||||||.++ +.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~------~~~~~~~~~vViDEah~~~-~~~---------- 199 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV-FDMLNRR------YLSPKYIKMFVLDEADEML-SRG---------- 199 (414)
T ss_dssp CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHH-HHHHHHT------SSCSTTCCEEEECSHHHHH-HTT----------
T ss_pred eEEEEECCcchHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CcccccCcEEEEECHHHhh-ccC----------
Confidence 999999998754332 224689999999998 5555432 2345678999999999987 432
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcc
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKH 307 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~d 307 (816)
|...+..++..++. ..+.+.||++....+..+. ..++...
T Consensus 200 ------~~~~~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~~~-- 239 (414)
T 3eiq_A 200 ------FKDQIYDIFQKLNS-------------------------NTQVVLLSATMPSDVLEVT-------KKFMRDP-- 239 (414)
T ss_dssp ------THHHHHHHHTTSCT-------------------------TCEEEEECSCCCHHHHHHH-------TTTCSSC--
T ss_pred ------cHHHHHHHHHhCCC-------------------------CCeEEEEEEecCHHHHHHH-------HHHcCCC--
Confidence 22255566666643 2456777887654443332 0111000
Q ss_pred eEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHh
Q psy2371 308 YIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIY 387 (816)
Q Consensus 308 YiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y 387 (816)
+.+
T Consensus 240 -------------------------------------~~~---------------------------------------- 242 (414)
T 3eiq_A 240 -------------------------------------IRI---------------------------------------- 242 (414)
T ss_dssp -------------------------------------EEE----------------------------------------
T ss_pred -------------------------------------EEE----------------------------------------
Confidence 000
Q ss_pred cCeEEEcCCCCccccccCcCeEe-cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch
Q psy2371 388 KLETITVPPNKINKRKDLQDKIY-KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466 (816)
Q Consensus 388 ~l~vv~IPt~~p~~r~d~~d~v~-~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~ 466 (816)
.++........-....+. .....|...+...+... .+.++||||++++.++.+++.|.+.|+.+..+||+..
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~ 315 (414)
T 3eiq_A 243 -----LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 315 (414)
T ss_dssp -----CCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CH
T ss_pred -----EecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCC
Confidence 000000000000001111 12234666666655443 4557999999999999999999999999999999966
Q ss_pred HHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q psy2371 467 KLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHI 544 (816)
Q Consensus 467 ~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhV 544 (816)
..++..+.++++ ...|+|||+++++|+|| |.|. +|
T Consensus 316 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi--------------------------------------p~v~-----~V 352 (414)
T 3eiq_A 316 QKERDVIMREFRSGSSRVLITTDLLARGIDV--------------------------------------QQVS-----LV 352 (414)
T ss_dssp HHHHHHHHHHHSCC---CEEECSSCC--CCG--------------------------------------GGCS-----CE
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccccCCCc--------------------------------------cCCC-----EE
Confidence 555544444333 44799999999999999 5666 99
Q ss_pred EEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 545 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 545 I~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|+++.|.|...|.||+||+||.|.+|.+..|++.+|
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 999999999999999999999999999999998876
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.6e-35 Score=320.16 Aligned_cols=348 Identities=18% Similarity=0.192 Sum_probs=246.3
Q ss_pred CCCcchh--hHHHHHHHHHHHHHHhccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEE
Q psy2371 55 GETLDSI--LPKAFSVCREASKRVLKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHI 126 (816)
Q Consensus 55 g~~ld~~--l~ea~a~vrea~~R~lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~V 126 (816)
+.+.+++ -++.+..+.+ .|+. |+|+|..++..+.+|+ ++.++||+|||++|.+|++.... .+..++|
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-----~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 94 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-----AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALI 94 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cCChhhcCCCHHHHHHHHH-----CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEE
Confidence 3444443 3444444433 5664 9999999999988877 99999999999999999996543 3557999
Q ss_pred EeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEE
Q psy2371 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFV 204 (816)
Q Consensus 127 vT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~ 204 (816)
++||++||.|.++++..++..+|++++...|+.+.... .....++|+|+||+.| .+++... ......+.++
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~------~~~~~~~~~v 167 (400)
T 1s2m_A 95 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRV-LDLASRK------VADLSDCSLF 167 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCTTCCEE
T ss_pred EcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHH-HHHHHhC------CcccccCCEE
Confidence 99999999999999999999999999999999875433 2335789999999997 4444332 2345688999
Q ss_pred EecchhhhhhhccCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhH
Q psy2371 205 ILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGY 284 (816)
Q Consensus 205 IvDEaDs~LiDea~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~ 284 (816)
||||||.++-.. |...+..+...++. ..+.+.+|++..
T Consensus 168 IiDEaH~~~~~~-----------------~~~~~~~i~~~~~~-------------------------~~~~i~lSAT~~ 205 (400)
T 1s2m_A 168 IMDEADKMLSRD-----------------FKTIIEQILSFLPP-------------------------THQSLLFSATFP 205 (400)
T ss_dssp EEESHHHHSSHH-----------------HHHHHHHHHTTSCS-------------------------SCEEEEEESCCC
T ss_pred EEeCchHhhhhc-----------------hHHHHHHHHHhCCc-------------------------CceEEEEEecCC
Confidence 999999987221 33355556555543 245677888866
Q ss_pred HHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHh
Q psy2371 285 EKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFR 364 (816)
Q Consensus 285 ~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~ 364 (816)
..+..++. ..+... +.+ .+.. ..+...+.
T Consensus 206 ~~~~~~~~-------~~~~~~--~~~-----------------------------------~~~~-~~~~~~~~------ 234 (400)
T 1s2m_A 206 LTVKEFMV-------KHLHKP--YEI-----------------------------------NLME-ELTLKGIT------ 234 (400)
T ss_dssp HHHHHHHH-------HHCSSC--EEE-----------------------------------SCCS-SCBCTTEE------
T ss_pred HHHHHHHH-------HHcCCC--eEE-----------------------------------Eecc-ccccCCce------
Confidence 55555431 111110 000 0000 00000000
Q ss_pred hhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhH
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENS 444 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~s 444 (816)
....+.....|...+...+... .+.++||||+|++.+
T Consensus 235 -----------------------------------------~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~ 271 (400)
T 1s2m_A 235 -----------------------------------------QYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRV 271 (400)
T ss_dssp -----------------------------------------EEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHH
T ss_pred -----------------------------------------eEEEEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHH
Confidence 0112233455666666655432 456899999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCCchHHHHH--HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHH
Q psy2371 445 ELLSNILKKNNLPHSVLNAKQHKLEAQ--IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKI 522 (816)
Q Consensus 445 e~Ls~~L~~~gi~~~vLnak~~~rEa~--ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~ 522 (816)
+.+++.|+..|+.+..+||+....++. +-.+......|+|||+++++|+||
T Consensus 272 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi--------------------------- 324 (400)
T 1s2m_A 272 ELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI--------------------------- 324 (400)
T ss_dssp HHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC---------------------------
T ss_pred HHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCc---------------------------
Confidence 999999999999999999986554443 333443455899999999999999
Q ss_pred HHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCC
Q psy2371 523 KKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKI 600 (816)
Q Consensus 523 ~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~ 600 (816)
|.+. +||+++.|.|...|.||+||+||.|++|.+..|++.+|.. .+.++.+.++.
T Consensus 325 -----------p~~~-----~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~-------~~~~i~~~~~~ 379 (400)
T 1s2m_A 325 -----------QAVN-----VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRF-------NLYKIEQELGT 379 (400)
T ss_dssp -----------TTEE-----EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH-------HHHHHHHHHTC
T ss_pred -----------cCCC-----EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHH-------HHHHHHHHhCC
Confidence 5565 9999999999999999999999999999999999888742 34455555554
No 12
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6e-36 Score=332.47 Aligned_cols=326 Identities=15% Similarity=0.055 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHH
Q psy2371 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 64 ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
+.+.-+.+..++.+|..|+|+|..+++.+++|+ |+.++||+|||++|++|+....-.|..++|++||++||.|.++.+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 5 NEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHH
Confidence 445556667778889999999999999999887 999999999999999988765557788999999999999999999
Q ss_pred HHHhhhcCCeEEEecCCCCHHHH-----Hhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhh-
Q psy2371 142 SVLYNWLGLSIGVNSSEISHSLK-----KKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILI- 214 (816)
Q Consensus 142 ~~l~~~lglsv~~i~~~~~~~~r-----~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~Li- 214 (816)
..+.. +|++++.+.|+.+..++ .... .++|+|+||+++ .+++.. .....+.++||||||.++-
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l-~~~l~~--------~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNREK--------LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHH-HHCHHH--------HTTCCCSEEEESCHHHHHHC
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHH-HHHHHH--------hccccccEEEEeChHhhhhc
Confidence 99888 99999999999986433 1222 389999999998 343331 2345799999999987652
Q ss_pred --------h-ccCCcceeccccccchhhhHHH-HhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechh-h
Q psy2371 215 --------D-EARTPLIISGEIKNNAQYFYKI-INPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTEN-G 283 (816)
Q Consensus 215 --------D-ea~tpliisg~~~~~~~~y~~~-i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~-g 283 (816)
+ .+ |.+. +..++..++.... .....-....+.+.+|++ .
T Consensus 155 ~~~~d~~l~~~~----------------~~~~~~~~i~~~~~~~~~--------------~~~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 155 SRNIDTLLMMVG----------------IPEEIIRKAFSTIKQGKI--------------YERPKNLKPGILVVSSATAK 204 (414)
T ss_dssp HHHHHHHHHHTT----------------CCHHHHHHHHHHHHHTCC--------------CCCCTTCCCCEEEESSCCSS
T ss_pred cchhhhHHhhcC----------------CcHHHHHHHHHhcccchh--------------hhhcccCCCceEEEEecCCC
Confidence 1 11 1112 3444444431000 000000012234445554 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHH
Q psy2371 284 YEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYF 363 (816)
Q Consensus 284 ~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f 363 (816)
...+...
T Consensus 205 ~~~~~~~------------------------------------------------------------------------- 211 (414)
T 3oiy_A 205 PRGIRPL------------------------------------------------------------------------- 211 (414)
T ss_dssp CCSSTTH-------------------------------------------------------------------------
T ss_pred cchhHHH-------------------------------------------------------------------------
Confidence 1111100
Q ss_pred hhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHh
Q psy2371 364 RMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIEN 443 (816)
Q Consensus 364 ~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~ 443 (816)
-+....++.+...+...+... ...+.. +|...+.+.+.+ .+.++||||+|+..
T Consensus 212 ------------------~~~~~~~~~~~~~~~~~~~i~---~~~~~~---~~~~~l~~~l~~---~~~~~lVF~~~~~~ 264 (414)
T 3oiy_A 212 ------------------LFRDLLNFTVGRLVSVARNIT---HVRISS---RSKEKLVELLEI---FRDGILIFAQTEEE 264 (414)
T ss_dssp ------------------HHHHHHSCCSSCCCCCCCSEE---EEEESS---CCHHHHHHHHHH---HCSSEEEEESSHHH
T ss_pred ------------------HHHHhhccCcCccccccccch---heeecc---CHHHHHHHHHHH---cCCCEEEEECCHHH
Confidence 011111111100000000000 001111 234445555544 24789999999999
Q ss_pred HHHHHHHHHhCCCCeE-EEcCCchHHHHHHHHHcCCCccEEEe----cCccccCccccCCCCchhhHHHhhhcchhhHHH
Q psy2371 444 SELLSNILKKNNLPHS-VLNAKQHKLEAQIIAQAGHPKMITIA----TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKK 518 (816)
Q Consensus 444 se~Ls~~L~~~gi~~~-vLnak~~~rEa~ii~~Ag~~g~VtIA----TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~ 518 (816)
++.++..|+..|+++. .+||+ +++ +-.+..+...|+|| ||+++||+||
T Consensus 265 ~~~l~~~L~~~~~~~~~~~h~~--~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDi----------------------- 317 (414)
T 3oiy_A 265 GKELYEYLKRFKFNVGETWSEF--EKN--FEDFKVGKINILIGVQAYYGKLTRGVDL----------------------- 317 (414)
T ss_dssp HHHHHHHHHHTTCCEEESSSCH--HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCC-----------------------
T ss_pred HHHHHHHHHHcCCceehhhcCc--chH--HHHHhCCCCeEEEEecCcCchhhccCcc-----------------------
Confidence 9999999999999998 99986 333 55555556789999 9999999999
Q ss_pred HHHHHHHHHHHHhhhhh-hhccCceEEEEecCC--CCcchhhhhcCccCCCC----CCceEEEEe
Q psy2371 519 KNKIKKLKNEWMLLHDK-VISSGGLHIIGTERH--ESRRIDNQLRGRSGRQG----DPGSSRFYL 576 (816)
Q Consensus 519 ~~~~~~~~~~~~~~~~~-V~~~GGLhVI~te~p--es~rid~Q~~GRtGRqG----dpG~s~~~l 576 (816)
|+ |. +||+++.| .|...|.||+|||||.| .+|.+.+|+
T Consensus 318 ---------------p~~v~-----~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 318 ---------------PERIK-----YVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp ---------------TTTCC-----EEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred ---------------ccccC-----EEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 56 65 99999999 99999999999999988 589999988
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-34 Score=315.97 Aligned_cols=320 Identities=18% Similarity=0.184 Sum_probs=228.0
Q ss_pred hcc-ccchhhhhhhccccCC--c--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 77 LKM-RHFDVQLIGGIALHYG--N--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G--~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
.|+ .|+|+|..+++.+++| + |+.++||+|||++|++|++.... .+..++|++||++||.|.++++..+..+.
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT 102 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc
Confidence 344 7999999999988876 4 99999999999999999986543 35679999999999999999999999999
Q ss_pred CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccc
Q psy2371 149 GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIK 228 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~ 228 (816)
++.+....++.... ....+++|+|+||+.| ++.+... ......++++||||||.++.+..
T Consensus 103 ~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIiDEah~~~~~~~----------- 162 (395)
T 3pey_A 103 KITSQLIVPDSFEK--NKQINAQVIVGTPGTV-LDLMRRK------LMQLQKIKIFVLDEADNMLDQQG----------- 162 (395)
T ss_dssp CCCEEEESTTSSCT--TSCBCCSEEEECHHHH-HHHHHTT------CBCCTTCCEEEEETHHHHHHSTT-----------
T ss_pred CeeEEEEecCchhh--hccCCCCEEEEcHHHH-HHHHHcC------CcccccCCEEEEEChhhhcCccc-----------
Confidence 99999998875422 2234789999999998 4444322 23457899999999999983222
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcce
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
|...+..+...++. ..+.+.+|++....++.+. ..++...
T Consensus 163 -----~~~~~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~~~--- 202 (395)
T 3pey_A 163 -----LGDQCIRVKRFLPK-------------------------DTQLVLFSATFADAVRQYA-------KKIVPNA--- 202 (395)
T ss_dssp -----HHHHHHHHHHTSCT-------------------------TCEEEEEESCCCHHHHHHH-------HHHSCSC---
T ss_pred -----cHHHHHHHHHhCCC-------------------------CcEEEEEEecCCHHHHHHH-------HHhCCCC---
Confidence 23244444444432 2455677777655544433 1111100
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
..+.+....
T Consensus 203 ----------------------------------~~~~~~~~~------------------------------------- 211 (395)
T 3pey_A 203 ----------------------------------NTLELQTNE------------------------------------- 211 (395)
T ss_dssp ----------------------------------EEECCCGGG-------------------------------------
T ss_pred ----------------------------------eEEEccccc-------------------------------------
Confidence 000000000
Q ss_pred CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHH
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKL 468 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~r 468 (816)
...+.. ............|...+...+. .. .+.++||||+|++.++.+++.|+..|+++..+||+....
T Consensus 212 -------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 212 -------VNVDAI--KQLYMDCKNEADKFDVLTELYG-LM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQ 280 (395)
T ss_dssp -------CSCTTE--EEEEEECSSHHHHHHHHHHHHT-TT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred -------cccccc--cEEEEEcCchHHHHHHHHHHHH-hc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHH
Confidence 000000 0000112244566666555443 33 457899999999999999999999999999999986544
Q ss_pred HH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE
Q psy2371 469 EA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG 546 (816)
Q Consensus 469 Ea--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~ 546 (816)
++ .+-.+......|+|||+++++|+|| |.+. +||+
T Consensus 281 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi--------------------------------------p~~~-----~Vi~ 317 (395)
T 3pey_A 281 ERDRLIDDFREGRSKVLITTNVLARGIDI--------------------------------------PTVS-----MVVN 317 (395)
T ss_dssp HHHHHHHHHHTTSCCEEEECGGGSSSCCC--------------------------------------TTEE-----EEEE
T ss_pred HHHHHHHHHHCCCCCEEEECChhhcCCCc--------------------------------------ccCC-----EEEE
Confidence 44 3444444455799999999999999 5565 9999
Q ss_pred ecCCC------CcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 547 TERHE------SRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 547 te~pe------s~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
++.|. |...|.||+||+||.|.+|.+..|++.+|+
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 99998 999999999999999999999999987764
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.8e-35 Score=340.02 Aligned_cols=334 Identities=16% Similarity=0.212 Sum_probs=228.4
Q ss_pred Hhcc-ccchhhhhhhcccc--CCc--eeeecCCCCchHHHHHHHHHHHhcCC-------cEEEEeCcHHHHHHHHHHHHH
Q psy2371 76 VLKM-RHFDVQLIGGIALH--YGN--ISEMQTGEGKTLVATLAAYLNSLSGQ-------GVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~L~--~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~-------~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.+|+ .|+|+|..+++.++ +|+ |+.|+||+|||++|++|++...+.++ .++|++||++||.|.++.+..
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 3576 49999999998887 555 99999999999999999997766554 799999999999999999999
Q ss_pred Hhhh----cCCeEEEecCCCCHHHH---HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 144 LYNW----LGLSIGVNSSEISHSLK---KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 144 l~~~----lglsv~~i~~~~~~~~r---~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
++.. .++.+..++++.+.... .....++|+|+||++| +++|...- ....+.+.++||||||.|+ |.
T Consensus 169 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~lViDEah~l~-~~ 241 (563)
T 3i5x_A 169 IHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKYS-----NKFFRFVDYKVLDEADRLL-EI 241 (563)
T ss_dssp HHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHHH-----HHHCTTCCEEEEETHHHHT-ST
T ss_pred HHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHH-HHHHHhcc-----ccccccceEEEEeCHHHHh-cc
Confidence 8653 35778888998874322 2244799999999998 56655421 1235679999999999998 54
Q ss_pred cCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHH
Q psy2371 217 ARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMAL 296 (816)
Q Consensus 217 a~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al 296 (816)
+ |.+.+..+...++.... . .....+.+.||+|....++++.
T Consensus 242 ~----------------f~~~~~~i~~~l~~~~~--------------~----~~~~~~~l~~SAT~~~~v~~~~----- 282 (563)
T 3i5x_A 242 G----------------FRDDLETISGILNEKNS--------------K----SADNIKTLLFSATLDDKVQKLA----- 282 (563)
T ss_dssp T----------------THHHHHHHHHHHHHHCS--------------S----CTTCCEEEEEESSCCTHHHHHT-----
T ss_pred c----------------hHHHHHHHHHhhhhccc--------------c----CccCceEEEEEccCCHHHHHHH-----
Confidence 3 33355555555543100 0 0012457788888766555543
Q ss_pred HHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccc
Q psy2371 297 RAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTA 376 (816)
Q Consensus 297 ~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa 376 (816)
..++. +. ..+.++..... ...+...+.
T Consensus 283 --~~~~~-~~-------~~~~~~~~~~~-------------------------~~~~~~~~~------------------ 309 (563)
T 3i5x_A 283 --NNIMN-KK-------ECLFLDTVDKN-------------------------EPEAHERID------------------ 309 (563)
T ss_dssp --TTTCC-SS-------EEEEEESSCSS-------------------------SCSSCTTEE------------------
T ss_pred --HHhcC-CC-------ceEEEeccCCC-------------------------CccccccCc------------------
Confidence 11111 11 11111110000 000000000
Q ss_pred cchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHH----HHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHH
Q psy2371 377 ETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEK----YQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452 (816)
Q Consensus 377 ~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K----~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~ 452 (816)
..++..+ ....+ ...+...+.+ ...+.++||||+|+..++.++..|+
T Consensus 310 ------------~~~~~~~----------------~~~~~~~~~~~~l~~~~~~-~~~~~~~iVF~~s~~~~~~l~~~L~ 360 (563)
T 3i5x_A 310 ------------QSVVISE----------------KFANSIFAAVEHIKKQIKE-RDSNYKAIIFAPTVKFTSFLCSILK 360 (563)
T ss_dssp ------------EEEEEES----------------STTHHHHHHHHHHHHHHHH-TTTCCEEEEECSCHHHHHHHHHHHH
T ss_pred ------------eEEEECc----------------hhHhhHHHHHHHHHHHHhh-cCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 0000111 11122 2233333332 2456789999999999999999999
Q ss_pred hC---CCCeEEEcCCchHHHH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHH
Q psy2371 453 KN---NLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKN 527 (816)
Q Consensus 453 ~~---gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (816)
+. |+++..+||+....++ .+-.+......|+|||++++||+||
T Consensus 361 ~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi-------------------------------- 408 (563)
T 3i5x_A 361 NEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF-------------------------------- 408 (563)
T ss_dssp HHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC--------------------------------
T ss_pred HhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc--------------------------------
Confidence 86 9999999998554444 4444443456899999999999999
Q ss_pred HHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 528 EWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 528 ~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|. +||+++.|.|...|.||+|||||.|++|.+..|++.+|
T Consensus 409 ------p~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 409 ------PNVH-----EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp ------TTCC-----EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred ------ccCC-----EEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhH
Confidence 5666 99999999999999999999999999999999998776
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.4e-35 Score=313.41 Aligned_cols=314 Identities=19% Similarity=0.187 Sum_probs=230.1
Q ss_pred hcc-ccchhhhhhhccccCC-c--eeeecCCCCchHHHHHHHHHHHhc--CCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKM-RHFDVQLIGGIALHYG-N--ISEMQTGEGKTLVATLAAYLNSLS--GQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G-~--Iaem~TGEGKTL~~~Lpa~l~aL~--g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.|+ .|+|+|..+++.+.+| + ++.++||+|||++|++|++..... |..++|++|+++|+.|.++.+..++...++
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 465 7999999999988877 3 899999999999999999855443 667999999999999999999999988999
Q ss_pred eEEEecCCCCHHHH-HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccccc
Q psy2371 151 SIGVNSSEISHSLK-KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKN 229 (816)
Q Consensus 151 sv~~i~~~~~~~~r-~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~ 229 (816)
+++.+.|+.+.... ....+++|+++||+.| ++++.. .....+.+.++|+||||.++ +..
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~------~~~~~~~~~~iIiDEah~~~-~~~------------ 163 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRI-LDHINR------GTLNLKNVKYFILDEADEML-NMG------------ 163 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHH-HHHHHT------TCSCTTSCCEEEEETHHHHH-TTT------------
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHH-HHHHHc------CCcccccCCEEEEeCchHhh-hhc------------
Confidence 99999999874332 2234799999999987 333332 22345788999999999987 322
Q ss_pred chhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceE
Q psy2371 230 NAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYI 309 (816)
Q Consensus 230 ~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYi 309 (816)
|...+..+...+++ ..+.+.+|++.......++ ...+. +|.
T Consensus 164 ----~~~~~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~---~~~ 204 (367)
T 1hv8_A 164 ----FIKDVEKILNACNK-------------------------DKRILLFSATMPREILNLA-------KKYMG---DYS 204 (367)
T ss_dssp ----THHHHHHHHHTSCS-------------------------SCEEEEECSSCCHHHHHHH-------HHHCC---SEE
T ss_pred ----hHHHHHHHHHhCCC-------------------------CceEEEEeeccCHHHHHHH-------HHHcC---CCe
Confidence 22244445444432 2345566776554433322 01110 000
Q ss_pred EeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcC
Q psy2371 310 IKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKL 389 (816)
Q Consensus 310 V~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l 389 (816)
T Consensus 205 -------------------------------------------------------------------------------- 204 (367)
T 1hv8_A 205 -------------------------------------------------------------------------------- 204 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHH
Q psy2371 390 ETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLE 469 (816)
Q Consensus 390 ~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rE 469 (816)
++..+...+. ....+..+..+|+.++.+.+. ..+.++||||+|++.++.+++.|++.|+++..+||+....+
T Consensus 205 -~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 276 (367)
T 1hv8_A 205 -FIKAKINANI----EQSYVEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQ 276 (367)
T ss_dssp -EEECCSSSSS----EEEEEECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHH
T ss_pred -EEEecCCCCc----eEEEEEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHH
Confidence 0000000000 012233456678888887764 35678999999999999999999999999999999865444
Q ss_pred HH--HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEe
Q psy2371 470 AQ--IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGT 547 (816)
Q Consensus 470 a~--ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~t 547 (816)
+. +-.+......|+|||+++++|+|+ |.+. +||++
T Consensus 277 r~~~~~~f~~~~~~vlv~T~~~~~Gid~--------------------------------------~~~~-----~Vi~~ 313 (367)
T 1hv8_A 277 REKVIRLFKQKKIRILIATDVMSRGIDV--------------------------------------NDLN-----CVINY 313 (367)
T ss_dssp HHHHHHHHHTTSSSEEEECTTHHHHCCC--------------------------------------SCCS-----EEEES
T ss_pred HHHHHHHHHcCCCeEEEECChhhcCCCc--------------------------------------ccCC-----EEEEe
Confidence 43 333444456899999999999999 4555 99999
Q ss_pred cCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 548 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 548 e~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
+.|.|...|.||+||+||.|.+|.+..|++.+|
T Consensus 314 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 314 HLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346 (367)
T ss_dssp SCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTS
T ss_pred cCCCCHHHhhhcccccccCCCccEEEEEEcHHH
Confidence 999999999999999999999999999998766
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-34 Score=337.47 Aligned_cols=339 Identities=16% Similarity=0.206 Sum_probs=229.9
Q ss_pred Hhccc-cchhhhhhhcccc--CCc--eeeecCCCCchHHHHHHHHHHHhcCC-------cEEEEeCcHHHHHHHHHHHHH
Q psy2371 76 VLKMR-HFDVQLIGGIALH--YGN--ISEMQTGEGKTLVATLAAYLNSLSGQ-------GVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 76 ~lg~~-p~~VQ~~~~~~L~--~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~-------~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
.+|+. |+|+|..+++.++ +|+ |+.|+||+|||++|++|++...+.++ .++|++||++||.|.++++..
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 36775 9999999998887 565 99999999999999999997766543 799999999999999999999
Q ss_pred Hhhh----cCCeEEEecCCCCHHHH---HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 144 LYNW----LGLSIGVNSSEISHSLK---KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 144 l~~~----lglsv~~i~~~~~~~~r---~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
++.. ..+.+..+.++.+.... .....++|+|+||++| .++|... .....+.+.++||||||.|+ +.
T Consensus 118 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~~~~lViDEah~l~-~~ 190 (579)
T 3sqw_A 118 IHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFRFVDYKVLDEADRLL-EI 190 (579)
T ss_dssp HHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCTTCCEEEEETHHHHT-ST
T ss_pred HHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH-HHHHHhc-----cccccccCCEEEEEChHHhh-cC
Confidence 8743 45778888998874332 2234799999999998 5555432 12245678999999999998 54
Q ss_pred cCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHH
Q psy2371 217 ARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMAL 296 (816)
Q Consensus 217 a~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al 296 (816)
+ |.+.+..+...++.... . .....+.+.||+|....+++++
T Consensus 191 g----------------f~~~~~~i~~~l~~~~~--------------~----~~~~~~~l~~SAT~~~~v~~~~----- 231 (579)
T 3sqw_A 191 G----------------FRDDLETISGILNEKNS--------------K----SADNIKTLLFSATLDDKVQKLA----- 231 (579)
T ss_dssp T----------------THHHHHHHHHHHHHHCS--------------S----CTTCCEEEEEESSCCTHHHHHT-----
T ss_pred C----------------CHHHHHHHHHHhhhhhc--------------c----cccCceEEEEeccCChHHHHHH-----
Confidence 3 33355555555543100 0 0012467788888766655543
Q ss_pred HHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccc
Q psy2371 297 RAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTA 376 (816)
Q Consensus 297 ~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa 376 (816)
..++.. .. .+.++..... ...+...+.
T Consensus 232 --~~~l~~-~~-------~~~~~~~~~~-------------------------~~~~~~~i~------------------ 258 (579)
T 3sqw_A 232 --NNIMNK-KE-------CLFLDTVDKN-------------------------EPEAHERID------------------ 258 (579)
T ss_dssp --TTTCCS-SE-------EEEEESSCSS-------------------------SCSSCTTEE------------------
T ss_pred --HHHcCC-Cc-------eEEEeecCcc-------------------------ccccccccc------------------
Confidence 111211 11 1111110000 000000000
Q ss_pred cchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC--
Q psy2371 377 ETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN-- 454 (816)
Q Consensus 377 ~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~-- 454 (816)
..++..+... .........+...+... ..+.++||||+|+..++.++..|++.
T Consensus 259 ------------~~~~~~~~~~------------~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 313 (579)
T 3sqw_A 259 ------------QSVVISEKFA------------NSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK 313 (579)
T ss_dssp ------------EEEEEESSTT------------HHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ------------eEEEEecchh------------hhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhc
Confidence 0001111000 00112223333433332 35678999999999999999999987
Q ss_pred -CCCeEEEcCCchH--HHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHh
Q psy2371 455 -NLPHSVLNAKQHK--LEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWML 531 (816)
Q Consensus 455 -gi~~~vLnak~~~--rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (816)
|+++..+||+... |+..+-.+......|+|||++++||+||
T Consensus 314 ~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDi------------------------------------ 357 (579)
T 3sqw_A 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF------------------------------------ 357 (579)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC------------------------------------
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCc------------------------------------
Confidence 9999999999554 4444444443456899999999999999
Q ss_pred hhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 532 LHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 532 ~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
|.|. |||+++.|.|...|.||+|||||.|.+|.+.+|++.+|.
T Consensus 358 --p~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 358 --PNVH-----EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp --TTCC-----EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred --ccCC-----EEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 5666 999999999999999999999999999999999998773
No 17
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.6e-34 Score=313.83 Aligned_cols=322 Identities=16% Similarity=0.177 Sum_probs=229.9
Q ss_pred hcc-ccchhhhhhhccccCC--c--eeeecCCCCchHHHHHHHHHHHhcC---CcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 77 LKM-RHFDVQLIGGIALHYG--N--ISEMQTGEGKTLVATLAAYLNSLSG---QGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G--~--Iaem~TGEGKTL~~~Lpa~l~aL~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
+|+ .|+|+|..+++.+++| + |+.++||+|||++|.+|++.....+ ..++|++||++||.|.++++..+...+
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 565 7999999999998876 4 9999999999999999999654433 369999999999999999999998875
Q ss_pred -CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 149 -GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 149 -glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
++++++..++.+... .....++|+|+||+++ .+++.. ........+.++||||||.++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~~ivv~T~~~l-~~~~~~-----~~~~~~~~~~~iViDEah~~~~~~~---------- 185 (412)
T 3fht_A 123 PELKLAYAVRGNKLER-GQKISEQIVIGTPGTV-LDWCSK-----LKFIDPKKIKVFVLDEADVMIATQG---------- 185 (412)
T ss_dssp TTCCEEEECTTCCCCT-TCCCCCSEEEECHHHH-HHHHTT-----SCSSCGGGCCEEEEETHHHHHSTTT----------
T ss_pred ccceEEEeecCcchhh-hhcCCCCEEEECchHH-HHHHHh-----cCCcChhhCcEEEEeCHHHHhhcCC----------
Confidence 789998888765322 2234689999999998 444432 1234457899999999999983232
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcc
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKH 307 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~d 307 (816)
|...+..+...++. ..+.+.+|++....+.++. ...+. +.
T Consensus 186 ------~~~~~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~-~~- 225 (412)
T 3fht_A 186 ------HQDQSIRIQRMLPR-------------------------NCQMLLFSATFEDSVWKFA-------QKVVP-DP- 225 (412)
T ss_dssp ------THHHHHHHHHTSCT-------------------------TCEEEEEESCCCHHHHHHH-------HHHSS-SC-
T ss_pred ------cHHHHHHHHhhCCC-------------------------CceEEEEEeecCHHHHHHH-------HHhcC-CC-
Confidence 22244445555543 2466778888766555443 11111 00
Q ss_pred eEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHh
Q psy2371 308 YIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIY 387 (816)
Q Consensus 308 YiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y 387 (816)
.++ .+..+..+...+.
T Consensus 226 ------~~~-----------------------------~~~~~~~~~~~~~----------------------------- 241 (412)
T 3fht_A 226 ------NVI-----------------------------KLKREEETLDTIK----------------------------- 241 (412)
T ss_dssp ------EEE-----------------------------CCCGGGSSCTTEE-----------------------------
T ss_pred ------eEE-----------------------------eeccccccccCce-----------------------------
Confidence 000 0000000000000
Q ss_pred cCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 388 KLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 388 ~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
...........|...+.+.+... .+.++||||+|+..++.++..|.+.|+++..+||+...
T Consensus 242 -----------------~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 302 (412)
T 3fht_A 242 -----------------QYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMV 302 (412)
T ss_dssp -----------------EEEEECSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred -----------------EEEEEcCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCH
Confidence 00011123456777777766543 45689999999999999999999999999999999655
Q ss_pred HHHH--HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEE
Q psy2371 468 LEAQ--IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHII 545 (816)
Q Consensus 468 rEa~--ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI 545 (816)
.++. +-.+......|+|||++++||+|| |.|. +||
T Consensus 303 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi--------------------------------------p~~~-----~Vi 339 (412)
T 3fht_A 303 EQRAAVIERFREGKEKVLVTTNVCARGIDV--------------------------------------EQVS-----VVI 339 (412)
T ss_dssp HHHHHHHHHHHTTSCSEEEECGGGTSSCCC--------------------------------------TTEE-----EEE
T ss_pred HHHHHHHHHHHCCCCcEEEEcCccccCCCc--------------------------------------cCCC-----EEE
Confidence 4444 333443455799999999999999 5665 999
Q ss_pred EecCCC------CcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 546 GTERHE------SRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 546 ~te~pe------s~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+++.|. |...|.||+||+||.|.+|.+..|++.+++
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 381 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred EECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhh
Confidence 999994 567999999999999999999999987654
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=338.54 Aligned_cols=322 Identities=16% Similarity=0.192 Sum_probs=127.2
Q ss_pred hcc-ccchhhhhhhccccCC--c--eeeecCCCCchHHHHHHHHHHHhcCC---cEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 77 LKM-RHFDVQLIGGIALHYG--N--ISEMQTGEGKTLVATLAAYLNSLSGQ---GVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G--~--Iaem~TGEGKTL~~~Lpa~l~aL~g~---~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
+|+ .|+|+|..+++.++.| + |+.++||+|||++|++|++.....+. .++|++||++||.|.++++..+..++
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 454 8999999999999876 4 99999999999999999986544443 79999999999999999999998875
Q ss_pred -CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 149 -GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 149 -glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
++.+++..++.... +.....++|+||||+++ .+++.. ......+.+.++||||||.++-+.+
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~~~~Ivv~Tp~~l-~~~l~~-----~~~~~~~~~~~iViDEah~~~~~~~---------- 252 (479)
T 3fmp_B 190 PELKLAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCSK-----LKFIDPKKIKVFVLDEADVMIATQG---------- 252 (479)
T ss_dssp TTCCEEEESTTCCCC-TTCCCCCSEEEECHHHH-HHHHTT-----SCCCCGGGCCEEEECCHHHHHTSTT----------
T ss_pred CCceEEEEeCCcccc-ccccCCCCEEEECchHH-HHHHHh-----cCCcCcccCCEEEEECHHHHhhcCC----------
Confidence 78888888876432 22245789999999998 455432 1234457899999999999983222
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcc
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKH 307 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~d 307 (816)
|......+...++. ..+.+++|++....+..+. ...+. +..
T Consensus 253 ------~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~-~~~ 293 (479)
T 3fmp_B 253 ------HQDQSIRIQRMLPR-------------------------NCQMLLFSATFEDSVWKFA-------QKVVP-DPN 293 (479)
T ss_dssp ------HHHHHHHHHTTSCT-------------------------TSEEEEEESCCCHHHHHHH-------HHHSS-SEE
T ss_pred ------cHHHHHHHHhhCCc-------------------------cceEEEEeCCCCHHHHHHH-------HHHcC-CCe
Confidence 33344555555543 3567788988766655543 12221 111
Q ss_pred eEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHh
Q psy2371 308 YIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIY 387 (816)
Q Consensus 308 YiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y 387 (816)
++. +..+..+...+. +.|
T Consensus 294 ~i~------------------------------------~~~~~~~~~~~~--------------------------~~~ 311 (479)
T 3fmp_B 294 VIK------------------------------------LKREEETLDTIK--------------------------QYY 311 (479)
T ss_dssp EEE------------------------------------EC---------------------------------------
T ss_pred EEe------------------------------------ccccccCcCCce--------------------------EEE
Confidence 110 000111111110 000
Q ss_pred cCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 388 KLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 388 ~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
+. ......|+..++..+... .+.++||||+|+..++.++..|...|+.+.++||+...
T Consensus 312 ----~~----------------~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~ 369 (479)
T 3fmp_B 312 ----VL----------------CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMV 369 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----EE----------------eCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCH
Confidence 00 111234555555554332 34689999999999999999999999999999999665
Q ss_pred HHHHHHHHcCCCc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEE
Q psy2371 468 LEAQIIAQAGHPK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHII 545 (816)
Q Consensus 468 rEa~ii~~Ag~~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI 545 (816)
.++..+.++++.| .|+|||++++||+|| |.|. +||
T Consensus 370 ~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi--------------------------------------p~v~-----~VI 406 (479)
T 3fmp_B 370 EQRAAVIERFREGKEKVLVTTNVCARGIDV--------------------------------------EQVS-----VVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCcEEEEccccccCCcc--------------------------------------ccCC-----EEE
Confidence 5555444544444 799999999999999 5676 999
Q ss_pred EecCCC------CcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 546 GTERHE------SRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 546 ~te~pe------s~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+++.|. +...|.||+|||||.|.+|.+..|++..++
T Consensus 407 ~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp ------------------------------------------
T ss_pred EecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 999994 568999999999999999999999986653
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-33 Score=299.32 Aligned_cols=307 Identities=18% Similarity=0.212 Sum_probs=218.6
Q ss_pred Hhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 76 VLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
.+|+ .|+|.|..++..+.+|+ ++.++||+|||++|++|++.. +..++|++|+++|+.|.++++..+...+++++
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~ 87 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRDIGRYMDTKV 87 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCE
T ss_pred HcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcE
Confidence 4676 59999999999988887 999999999999999998853 88899999999999999999999999999999
Q ss_pred EEecCCCCHHHH-HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccch
Q psy2371 153 GVNSSEISHSLK-KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNA 231 (816)
Q Consensus 153 ~~i~~~~~~~~r-~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~ 231 (816)
+.+.|+.+.... .....++|+|+||+.| .+++.. .....+.++++|+||||.++ +.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~iViDEah~~~-~~~-------------- 145 (337)
T 2z0m_A 88 AEVYGGMPYKAQINRVRNADIVVATPGRL-LDLWSK------GVIDLSSFEIVIIDEADLMF-EMG-------------- 145 (337)
T ss_dssp EEECTTSCHHHHHHHHTTCSEEEECHHHH-HHHHHT------TSCCGGGCSEEEEESHHHHH-HTT--------------
T ss_pred EEEECCcchHHHHhhcCCCCEEEECHHHH-HHHHHc------CCcchhhCcEEEEEChHHhh-ccc--------------
Confidence 999999875433 3334699999999997 333332 22345788999999999987 332
Q ss_pred hhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEe
Q psy2371 232 QYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIK 311 (816)
Q Consensus 232 ~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~ 311 (816)
|...+..+...++. ..+.+.+|++......+.+. ..+. + |..
T Consensus 146 --~~~~~~~~~~~~~~-------------------------~~~~~~~SAT~~~~~~~~~~-------~~~~-~--~~~- 187 (337)
T 2z0m_A 146 --FIDDIKIILAQTSN-------------------------RKITGLFSATIPEEIRKVVK-------DFIT-N--YEE- 187 (337)
T ss_dssp --CHHHHHHHHHHCTT-------------------------CSEEEEEESCCCHHHHHHHH-------HHSC-S--CEE-
T ss_pred --cHHHHHHHHhhCCc-------------------------ccEEEEEeCcCCHHHHHHHH-------HhcC-C--cee-
Confidence 22245555555542 23445678887666555441 1111 0 000
Q ss_pred CCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeE
Q psy2371 312 NNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLET 391 (816)
Q Consensus 312 d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~v 391 (816)
+... .....+. ..+
T Consensus 188 ------~~~~------------------------------~~~~~~~------------------------------~~~ 201 (337)
T 2z0m_A 188 ------IEAC------------------------------IGLANVE------------------------------HKF 201 (337)
T ss_dssp ------EECS------------------------------GGGGGEE------------------------------EEE
T ss_pred ------eecc------------------------------cccCCce------------------------------EEE
Confidence 0000 0000000 001
Q ss_pred EEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchH--HH
Q psy2371 392 ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHK--LE 469 (816)
Q Consensus 392 v~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~--rE 469 (816)
+.++.. +...+..+.. ..+.++||||+|++.++.+++.|. .+..+||+... |+
T Consensus 202 ~~~~~~-------------------~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~ 256 (337)
T 2z0m_A 202 VHVKDD-------------------WRSKVQALRE--NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRN 256 (337)
T ss_dssp EECSSS-------------------SHHHHHHHHT--CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHH
T ss_pred EEeChH-------------------HHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHH
Confidence 111110 1112233332 356789999999999999999887 57789998544 44
Q ss_pred HHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecC
Q psy2371 470 AQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTER 549 (816)
Q Consensus 470 a~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~ 549 (816)
..+-.+......|+|||+++|+|+|+ |.+. +||+++.
T Consensus 257 ~~~~~f~~~~~~vlv~T~~~~~Gid~--------------------------------------~~~~-----~Vi~~~~ 293 (337)
T 2z0m_A 257 RNIDAFREGEYDMLITTDVASRGLDI--------------------------------------PLVE-----KVINFDA 293 (337)
T ss_dssp HHHHHHHTTSCSEEEECHHHHTTCCC--------------------------------------CCBS-----EEEESSC
T ss_pred HHHHHHHcCCCcEEEEcCccccCCCc--------------------------------------cCCC-----EEEEecC
Confidence 44444444456899999999999999 4565 9999999
Q ss_pred CCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 550 HESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 550 pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.|...|.||+||+||.|++|.+..|++ +|
T Consensus 294 ~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~ 323 (337)
T 2z0m_A 294 PQDLRTYIHRIGRTGRMGRKGEAITFIL-NE 323 (337)
T ss_dssp CSSHHHHHHHHTTBCGGGCCEEEEEEES-SC
T ss_pred CCCHHHhhHhcCccccCCCCceEEEEEe-Cc
Confidence 9999999999999999999999999998 44
No 20
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5e-33 Score=325.58 Aligned_cols=328 Identities=18% Similarity=0.153 Sum_probs=229.1
Q ss_pred HHHHHHHHhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 69 CREASKRVLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 69 vrea~~R~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
+.++.++.+|+ .|+|+|..++..+++|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+..+
T Consensus 32 l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~- 107 (591)
T 2v1x_A 32 VKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQL- 107 (591)
T ss_dssp HHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhc-
Confidence 34555667887 78999999999999887 99999999999999999984 3557999999999999988877654
Q ss_pred hhcCCeEEEecCCCCHHHHHh--------hcCCCEEEECCCcchh-hhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 146 NWLGLSIGVNSSEISHSLKKK--------SYEADITYGTNNEFGF-DYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r~~--------~y~~dI~ygT~~~l~f-DyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
|++++++.++.+..++.. .-.++|+|+||++|.. ..+.+.+. .......+.++||||||.++ +.
T Consensus 108 ---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~---~~~~~~~i~~iViDEAH~is-~~ 180 (591)
T 2v1x_A 108 ---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE---KAYEARRFTRIAVDEVHCCS-QW 180 (591)
T ss_dssp ---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH---HHHHTTCEEEEEEETGGGGS-TT
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH---hhhhccCCcEEEEECccccc-cc
Confidence 999999999988665432 2368999999998732 12333331 12234578999999999987 33
Q ss_pred cCCcceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHH
Q psy2371 217 ARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMAL 296 (816)
Q Consensus 217 a~tpliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al 296 (816)
+.. -...|. .+..+...++ ..+.+.||++....+...+
T Consensus 181 g~d----------fr~~~~-~l~~l~~~~~--------------------------~~~ii~lSAT~~~~v~~~i----- 218 (591)
T 2v1x_A 181 GHD----------FRPDYK-ALGILKRQFP--------------------------NASLIGLTATATNHVLTDA----- 218 (591)
T ss_dssp CTT----------CCGGGG-GGGHHHHHCT--------------------------TSEEEEEESSCCHHHHHHH-----
T ss_pred ccc----------cHHHHH-HHHHHHHhCC--------------------------CCcEEEEecCCCHHHHHHH-----
Confidence 210 000122 2222222222 1345667776655443322
Q ss_pred HHHHHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccc
Q psy2371 297 RAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTA 376 (816)
Q Consensus 297 ~A~~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa 376 (816)
. ..+.....+++
T Consensus 219 -~-~~l~~~~~~~~------------------------------------------------------------------ 230 (591)
T 2v1x_A 219 -Q-KILCIEKCFTF------------------------------------------------------------------ 230 (591)
T ss_dssp -H-HHTTCCSCEEE------------------------------------------------------------------
T ss_pred -H-HHhCCCCcEEE------------------------------------------------------------------
Confidence 0 11111000000
Q ss_pred cchHHHHHHHhcCeEEEcCCCCccccccCcCeEe--cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC
Q psy2371 377 ETEAYEFQEIYKLETITVPPNKINKRKDLQDKIY--KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN 454 (816)
Q Consensus 377 ~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~--~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~ 454 (816)
.-+.++|..+.. +.. ....++...+++.+.+.+ .+.++||||+|+..++.++..|...
T Consensus 231 ----------------~~~~~r~nl~~~---v~~~~~~~~~~~~~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~~ 290 (591)
T 2v1x_A 231 ----------------TASFNRPNLYYE---VRQKPSNTEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNL 290 (591)
T ss_dssp ----------------ECCCCCTTEEEE---EEECCSSHHHHHHHHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred ----------------ecCCCCcccEEE---EEeCCCcHHHHHHHHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHHC
Confidence 000111111000 000 123566777777776544 5789999999999999999999999
Q ss_pred CCCeEEEcCCchHHHHH--HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhh
Q psy2371 455 NLPHSVLNAKQHKLEAQ--IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532 (816)
Q Consensus 455 gi~~~vLnak~~~rEa~--ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (816)
|+.+..+||+....++. +-.+......|+|||+++|+|+|+
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~------------------------------------- 333 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK------------------------------------- 333 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC-------------------------------------
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc-------------------------------------
Confidence 99999999996555544 334444455899999999999999
Q ss_pred hhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 533 ~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|+|. +||+++.|.|...|.|++|||||.|.+|.+.+|.+.+|
T Consensus 334 -p~V~-----~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 334 -PDVR-----FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp -SCEE-----EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred -cccc-----EEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 5676 99999999999999999999999999999999998877
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-34 Score=315.59 Aligned_cols=320 Identities=20% Similarity=0.258 Sum_probs=129.8
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
+|+ .|+|.|..++..+.+|+ ++.++||+|||++|++|++.... .+..++|++|+++|+.|.++++..+...+|+
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 465 89999999999988876 99999999999999999985433 3568999999999999999999999999999
Q ss_pred eEEEecCCCCHHHHHh-hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccccc
Q psy2371 151 SIGVNSSEISHSLKKK-SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKN 229 (816)
Q Consensus 151 sv~~i~~~~~~~~r~~-~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~ 229 (816)
+++.+.|+.+..+... ..+++|+++||+.| ++.+.. .......+.++|+||||.++ +..
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~vIiDEah~~~-~~~------------ 178 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQR------RRFRTDKIKMFILDEADEML-SSG------------ 178 (394)
T ss_dssp CEEEECSSCCHHHHHHHHHHCSEEEECHHHH-HHHHHT------TSSCCTTCCEEEEETHHHHH-HTT------------
T ss_pred eEEEEeCCCchHHHHhhcCCCCEEEECHHHH-HHHHHh------CCcchhhCcEEEEEChHHhh-CCC------------
Confidence 9999999987543322 23789999999997 444432 12345678999999999987 332
Q ss_pred chhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceE
Q psy2371 230 NAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYI 309 (816)
Q Consensus 230 ~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYi 309 (816)
|...+..+...+++ ..+.+.+|++....+..++ ...+.......
T Consensus 179 ----~~~~~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~-------~~~~~~~~~~~ 222 (394)
T 1fuu_A 179 ----FKEQIYQIFTLLPP-------------------------TTQVVLLSATMPNDVLEVT-------TKFMRNPVRIL 222 (394)
T ss_dssp ----CHHHHHHHHHHSCT-------------------------TCEEEEECSSCCHHHHHHH-------HHHCCSCEEEE
T ss_pred ----cHHHHHHHHHhCCC-------------------------CceEEEEEEecCHHHHHHH-------HHhcCCCeEEE
Confidence 22255566666543 2456788988766554443 11222111111
Q ss_pred EeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcC
Q psy2371 310 IKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKL 389 (816)
Q Consensus 310 V~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l 389 (816)
+..+ ..+...+. .++
T Consensus 223 ~~~~-------------------------------------~~~~~~~~--~~~-------------------------- 237 (394)
T 1fuu_A 223 VKKD-------------------------------------ELTLEGIK--QFY-------------------------- 237 (394)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecCc-------------------------------------cccCCCce--EEE--------------------------
Confidence 1100 00000000 000
Q ss_pred eEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHH
Q psy2371 390 ETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLE 469 (816)
Q Consensus 390 ~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rE 469 (816)
+.++ ....|...+.+.+.. . .+.++||||+|++.++.+++.|++.|+.+..+||+....+
T Consensus 238 --~~~~----------------~~~~~~~~l~~~~~~-~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 297 (394)
T 1fuu_A 238 --VNVE----------------EEEYKYECLTDLYDS-I-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 297 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --EEcC----------------chhhHHHHHHHHHhc-C-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHH
Confidence 0000 011233333333322 2 3457999999999999999999999999999999965555
Q ss_pred HHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEe
Q psy2371 470 AQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGT 547 (816)
Q Consensus 470 a~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~t 547 (816)
+..+.++++ ...|+|||+++++|+|+ |.+. +||++
T Consensus 298 r~~~~~~f~~~~~~vlv~T~~~~~Gldi--------------------------------------~~~~-----~Vi~~ 334 (394)
T 1fuu_A 298 RDTIMKEFRSGSSRILISTDLLARGIDV--------------------------------------QQVS-----LVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHCCCCcEEEECChhhcCCCc--------------------------------------ccCC-----EEEEe
Confidence 544444444 44799999999999999 5665 99999
Q ss_pred cCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 548 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 548 e~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
+.|.|...|.||+||+||.|++|.+..|++.+|
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 367 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367 (394)
T ss_dssp ---------------------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCCceEEEEEchhH
Confidence 999999999999999999999999999998776
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.4e-33 Score=316.86 Aligned_cols=128 Identities=17% Similarity=0.130 Sum_probs=102.7
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-----CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-----GQGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-----g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
+.|+|+|..+++.+++|+ |+.++||+|||++|.+|+...... +..++|++||++|+.|.++.+..++..+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 589999999999988776 999999999999999999866554 6679999999999999999999999999999
Q ss_pred EEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCcc-ccccceEEEecchhhhh
Q psy2371 152 IGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDR-VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 152 v~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~-~~r~~~~~IvDEaDs~L 213 (816)
++.+.|+.+...+ ....+++|+++||+.| .+.+.. ... ....++++||||||.+.
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~~vViDEah~~~ 143 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFED------GTLTSLSIFTLMIFDECHNTT 143 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHH-HHHHHS------SSCCCSTTCSEEEEETGGGCS
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHH-HHHHHh------CcccccccCCEEEEECCcccC
Confidence 9999998864432 2234689999999997 343332 122 45789999999999987
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-32 Score=317.27 Aligned_cols=317 Identities=14% Similarity=0.122 Sum_probs=224.4
Q ss_pred HHHHHHhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 71 EASKRVLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 71 ea~~R~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
++.++.+|+ .|+|.|..++..+++|+ ++.|+||+|||++|.+|++.. +..++||+|+++|+.+..+.+..
T Consensus 15 ~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~~q~~~~l~~---- 87 (523)
T 1oyw_A 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMKDQVDQLQA---- 87 (523)
T ss_dssp HHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHHHHHHHHHHH----
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHHHHHHHHHHH----
Confidence 444666787 78999999999999887 999999999999999999842 45689999999999988777654
Q ss_pred cCCeEEEecCCCCHHHHHh------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 148 LGLSIGVNSSEISHSLKKK------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 148 lglsv~~i~~~~~~~~r~~------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
+|+.+.++.++.+..++.. .-.++|+|+||++|..+...+.+ ....+.++||||||.+. +.+..
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l-------~~~~~~~vViDEaH~i~-~~g~~-- 157 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHL-------AHWNPVLLAVDEAHCIS-QWGHD-- 157 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHH-------TTSCEEEEEESSGGGGC-TTSSC--
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHH-------hhCCCCEEEEeCccccC-cCCCc--
Confidence 5999999999887554322 23589999999998433333332 22578999999999986 33210
Q ss_pred eeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHH
Q psy2371 222 IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVL 301 (816)
Q Consensus 222 iisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l 301 (816)
-...|. .+..+...++. .+.+.||++......
T Consensus 158 --------fr~~~~-~l~~l~~~~~~--------------------------~~~i~lSAT~~~~~~------------- 189 (523)
T 1oyw_A 158 --------FRPEYA-ALGQLRQRFPT--------------------------LPFMALTATADDTTR------------- 189 (523)
T ss_dssp --------CCHHHH-GGGGHHHHCTT--------------------------SCEEEEESCCCHHHH-------------
T ss_pred --------cHHHHH-HHHHHHHhCCC--------------------------CCEEEEeCCCCHHHH-------------
Confidence 011133 23223332221 234455554433222
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
.
T Consensus 190 -------------------------------------------------------------------------------~ 190 (523)
T 1oyw_A 190 -------------------------------------------------------------------------------Q 190 (523)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred HHHHHhcCe--EEEcC-CCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCe
Q psy2371 382 EFQEIYKLE--TITVP-PNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPH 458 (816)
Q Consensus 382 e~~~~Y~l~--vv~IP-t~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~ 458 (816)
++.+.+++. ++.++ .++|..+ ........+...+++.+.+. .+.++||||+|++.++.+++.|++.|+++
T Consensus 191 ~i~~~l~~~~~~~~~~~~~r~~l~-----~~v~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~ 263 (523)
T 1oyw_A 191 DIVRLLGLNDPLIQISSFDRPNIR-----YMLMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISA 263 (523)
T ss_dssp HHHHHHTCCSCEEEECCCCCTTEE-----EEEEECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhCCCCCeEEeCCCCCCceE-----EEEEeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCE
Confidence 222222221 11221 1222111 11122234666777777653 57789999999999999999999999999
Q ss_pred EEEcCCchHHHH--HHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhh
Q psy2371 459 SVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKV 536 (816)
Q Consensus 459 ~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 536 (816)
..+||.....++ .+-.+......|+|||+++|+|+|+ |.|
T Consensus 264 ~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~--------------------------------------p~v 305 (523)
T 1oyw_A 264 AAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK--------------------------------------PNV 305 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC--------------------------------------TTC
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc--------------------------------------cCc
Confidence 999998655444 3444444456899999999999999 567
Q ss_pred hccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 537 ISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 537 ~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
. +||+++.|.|...|.|++|||||.|.+|.+.+|++.+|.
T Consensus 306 ~-----~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 306 R-----FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp C-----EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred c-----EEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 6 999999999999999999999999999999999988874
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1e-32 Score=314.20 Aligned_cols=129 Identities=21% Similarity=0.177 Sum_probs=107.4
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-----CCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-----GQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-----g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.+.|+|+|..+++.+++|+ |+.++||+|||++|++|+...... +..++|++||++|+.|.++.+..++..+|+
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 3689999999999988777 999999999999999999866554 677999999999999999999999999999
Q ss_pred eEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCcc-ccccceEEEecchhhhh
Q psy2371 151 SIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDR-VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 151 sv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~-~~r~~~~~IvDEaDs~L 213 (816)
+++.+.|+.+...+ ....+++|+|+||+.| .+.+... .. ....+.++||||||.++
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~~vViDEah~~~ 140 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQIL-VNNLNNG------AIPSLSVFTLMIFDECHNTS 140 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHH-HHHHHTS------SSCCGGGCSEEEETTGGGCS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHH-HHHHhcC------cccccccCCEEEEECccccC
Confidence 99999999864332 2223689999999997 3433321 22 45789999999999997
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.98 E-value=3.2e-32 Score=338.12 Aligned_cols=137 Identities=19% Similarity=0.122 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 67 SVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 67 a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
....+.....+|+.|+|+|..+++.+++|+ |+.++||+|||++|++|+......|..++|++||++||.|.++.+..+
T Consensus 65 ~~~~~~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 65 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 344455667789999999999999999987 999999999999777777755557788999999999999999999996
Q ss_pred hhhcCCeEEEecCCCCHHHH-----Hhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 145 YNWLGLSIGVNSSEISHSLK-----KKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~r-----~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
. ..|++++++.|+.+..++ .... .++|+||||++| .+++.. ...+.+.++||||||.++
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL-~~~l~~--------l~~~~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNREK--------LSQKRFDFVFVDDVDAVL 209 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHH-HHSHHH--------HHTSCCSEEEESCHHHHT
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHH-HHHHHh--------hcccCcCEEEEeCCCccc
Confidence 6 789999999999875322 2222 489999999998 444331 234689999999996655
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.6e-32 Score=310.66 Aligned_cols=318 Identities=16% Similarity=0.160 Sum_probs=197.9
Q ss_pred cc-ccchhhhhhhccccCC--c--eeeecCCCCchHHHHHHHHHHHhcC---CcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 78 KM-RHFDVQLIGGIALHYG--N--ISEMQTGEGKTLVATLAAYLNSLSG---QGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 78 g~-~p~~VQ~~~~~~L~~G--~--Iaem~TGEGKTL~~~Lpa~l~aL~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
|+ .|+++|..++..+.+| + |+.|+||+|||++|++|++.....+ ..++|++|+++|+.|.++++..++...+
T Consensus 138 g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~ 217 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTE 217 (508)
T ss_dssp -CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSS
T ss_pred cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccC
Confidence 44 6999999999998876 4 9999999999999999999654443 3799999999999999999999999888
Q ss_pred CeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccccc
Q psy2371 150 LSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKN 229 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~ 229 (816)
+.+....++..... ....++|+++||+.+ ++++... ......++++||||||.+..+..
T Consensus 218 ~~~~~~~~~~~~~~--~~~~~~Ivv~T~~~l-~~~l~~~------~~~~~~~~lIIiDEaH~~~~~~~------------ 276 (508)
T 3fho_A 218 VKTAFGIKDSVPKG--AKIDAQIVIGTPGTV-MDLMKRR------QLDARDIKVFVLDEADNMLDQQG------------ 276 (508)
T ss_dssp CCEEC------------CCCCSEEEECHHHH-HHHHHTT------CSCCTTCCEEEECCHHHHTTC--------------
T ss_pred eeEEEEeCCccccc--ccCCCCEEEECHHHH-HHHHHcC------CccccCCCEEEEechhhhcccCC------------
Confidence 88887766644322 223789999999998 4444322 23456899999999999873221
Q ss_pred chhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceE
Q psy2371 230 NAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYI 309 (816)
Q Consensus 230 ~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYi 309 (816)
|...+..+...++. ..+.+.+|++....++.+. ..++. +..
T Consensus 277 ----~~~~~~~i~~~~~~-------------------------~~~~i~lSAT~~~~~~~~~-------~~~~~-~~~-- 317 (508)
T 3fho_A 277 ----LGDQSMRIKHLLPR-------------------------NTQIVLFSATFSERVEKYA-------ERFAP-NAN-- 317 (508)
T ss_dssp ----CHHHHHHHHHHSCT-------------------------TCEEEEEESCCSTHHHHHH-------HHHST-TCE--
T ss_pred ----cHHHHHHHHHhCCc-------------------------CCeEEEEeCCCCHHHHHHH-------HHhcC-CCe--
Confidence 22234444444432 2344666776554444432 01110 000
Q ss_pred EeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcC
Q psy2371 310 IKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKL 389 (816)
Q Consensus 310 V~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l 389 (816)
T Consensus 318 -------------------------------------------------------------------------------- 317 (508)
T 3fho_A 318 -------------------------------------------------------------------------------- 317 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcCCCC-ccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--
Q psy2371 390 ETITVPPNK-INKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH-- 466 (816)
Q Consensus 390 ~vv~IPt~~-p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~-- 466 (816)
.+.++... +................|...+...+.. . .+.++||||+|+..++.++..|.+.|+.+..+||+..
T Consensus 318 -~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~ 394 (508)
T 3fho_A 318 -EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL-L-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGA 394 (508)
T ss_dssp -EECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----C
T ss_pred -EEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh-c-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 00000000 0000000001112345566666665543 2 4568999999999999999999999999999999854
Q ss_pred HHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE
Q psy2371 467 KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG 546 (816)
Q Consensus 467 ~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~ 546 (816)
+|+..+-.+......|+|||+++++|+|| |.|. +||+
T Consensus 395 ~R~~il~~f~~g~~~VLVaT~~l~~GiDi--------------------------------------p~v~-----~VI~ 431 (508)
T 3fho_A 395 QRDAIMDSFRVGTSKVLVTTNVIARGIDV--------------------------------------SQVN-----LVVN 431 (508)
T ss_dssp TTGGGTHHHHSSSCCCCEECC-----CCC--------------------------------------TTCC-----EEEC
T ss_pred HHHHHHHHHHCCCCeEEEeCChhhcCCCc--------------------------------------cCCC-----EEEE
Confidence 34433444444456899999999999999 5565 9999
Q ss_pred ecCC------CCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 547 TERH------ESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 547 te~p------es~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
++.| .|...|.||+||+||.|++|.+..|++.+++
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~ 472 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS 472 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTS
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHH
Confidence 9999 7899999999999999999999999986654
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.6e-30 Score=313.74 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=104.1
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-----CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-----GQGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-----g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
..|+|+|..++..+++|+ |+.++||+|||++|++|+...... +..|+|++||++|+.|..+.+..++..+|++
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 489999999999988877 999999999999999999866555 6779999999999999999999999999999
Q ss_pred EEEecCCCCHHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCcc-ccccceEEEecchhhhh
Q psy2371 152 IGVNSSEISHSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDR-VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 152 v~~i~~~~~~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~-~~r~~~~~IvDEaDs~L 213 (816)
++.+.|+.+... +....+++|+|+||+.| .+.+.. ... ....++++||||||.+.
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~------~~~~~~~~~~~iViDEaH~~~ 384 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFED------GTLTSLSIFTLMIFDECHNTT 384 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHH-HHHHHS------SSCCCGGGCSEEEETTGGGCS
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHH-HHHHHh------ccccccccCCEEEEECccccC
Confidence 999999986443 23334799999999997 343332 122 45789999999999987
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.1e-30 Score=289.30 Aligned_cols=354 Identities=18% Similarity=0.134 Sum_probs=223.8
Q ss_pred ccccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 78 KMRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
++.|+|.|..++..+.+|. |+.++||+|||+++.+|+..... .+..++||+|++.|+.|-++++..++...+.+++.+
T Consensus 7 ~~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCCccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 5689999999998887766 99999999999999999885433 477899999999999987777665543333499999
Q ss_pred cCCCCHHHHHhhc-CCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhh
Q psy2371 156 SSEISHSLKKKSY-EADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYF 234 (816)
Q Consensus 156 ~~~~~~~~r~~~y-~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y 234 (816)
.|+.+..++.... .++|+++||+.|.-++ .. .......++++||||||.+.-+. .|
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~-~~------~~~~~~~~~~vIiDEaH~~~~~~----------------~~ 143 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDL-LA------GRISLEDVSLIVFDEAHRAVGNY----------------AY 143 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHH-HT------TSCCTTSCSEEEEETGGGCSTTC----------------HH
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHH-hc------CCcchhhceEEEEECCcccCCCC----------------cH
Confidence 9998866554433 6899999999873222 21 12345689999999999987221 13
Q ss_pred HHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhH---HHHHHHHHHHHHHHHHHhccCcceEEe
Q psy2371 235 YKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGY---EKYENILIKMALRAHVLYHKNKHYIIK 311 (816)
Q Consensus 235 ~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~---~~~e~~l~~~Al~A~~l~~~~~dYiV~ 311 (816)
. .+...+....+ ..+.+.||++.. ..+..++ ..+..
T Consensus 144 ~-~~~~~~~~~~~-------------------------~~~~l~lTaTp~~~~~~~~~l~--------~~l~~------- 182 (494)
T 1wp9_A 144 V-FIAREYKRQAK-------------------------NPLVIGLTASPGSTPEKIMEVI--------NNLGI------- 182 (494)
T ss_dssp H-HHHHHHHHHCS-------------------------SCCEEEEESCSCSSHHHHHHHH--------HHTTC-------
T ss_pred H-HHHHHHHhcCC-------------------------CCeEEEEecCCCCCcHHHHHHH--------HhcCh-------
Confidence 3 33222222221 245677787753 2222222 01100
Q ss_pred CCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhccc-----ccccchHHHHHHH
Q psy2371 312 NNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMT-----GTAETEAYEFQEI 386 (816)
Q Consensus 312 d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmT-----GTa~te~~e~~~~ 386 (816)
.. +.+..... ....+.+.... .+...+..++.+.
T Consensus 183 -~~------------------------------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (494)
T 1wp9_A 183 -EH------------------------------IEYRSENS----------PDVRPYVKGIRFEWVRVDLPEIYKEVRKL 221 (494)
T ss_dssp -CE------------------------------EEECCTTS----------TTTGGGCCCCCEEEEEECCCHHHHHHHHH
T ss_pred -he------------------------------eeccCCCc----------HHHHHhcCCCceeEEecCCcHHHHHHHHH
Confidence 00 00000000 00011111110 0111111111110
Q ss_pred hc----C------eEEEcCCCCccc-cccC---------------cC---------------------------------
Q psy2371 387 YK----L------ETITVPPNKINK-RKDL---------------QD--------------------------------- 407 (816)
Q Consensus 387 Y~----l------~vv~IPt~~p~~-r~d~---------------~d--------------------------------- 407 (816)
+. . +.-..++..+.. ..+. +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (494)
T 1wp9_A 222 LREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301 (494)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 00 0 000000000000 0000 00
Q ss_pred ----------------------------------eEecChHHHHHHHHHHHHhhc--cCCCcEEEEEcccHhHHHHHHHH
Q psy2371 408 ----------------------------------KIYKTMEEKYQAILMDIKNCY--IKEQPVLVGTTSIENSELLSNIL 451 (816)
Q Consensus 408 ----------------------------------~v~~t~~~K~~ai~~~i~~~~--~~grpVLVft~si~~se~Ls~~L 451 (816)
........|..++.+.+.+.. ..+.++||||+++..++.+++.|
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L 381 (494)
T 1wp9_A 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNEL 381 (494)
T ss_dssp HHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHH
Confidence 000034567788888776643 46788999999999999999999
Q ss_pred HhCCCCeEEEcC--------Cc--hHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHH
Q psy2371 452 KKNNLPHSVLNA--------KQ--HKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNK 521 (816)
Q Consensus 452 ~~~gi~~~vLna--------k~--~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~ 521 (816)
...|+++..+|| .. .+|+..+-.+......|+|||+++|+|+|+
T Consensus 382 ~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl-------------------------- 435 (494)
T 1wp9_A 382 VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDV-------------------------- 435 (494)
T ss_dssp HHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGS--------------------------
T ss_pred HHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCc--------------------------
Confidence 999999999999 53 455555555544456899999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 522 IKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 522 ~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|.+. +||+++.|.|...|.||+||+||.|. |.+..|++.++
T Consensus 436 ------------~~~~-----~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 436 ------------PEVD-----LVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp ------------TTCC-----EEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred ------------hhCC-----EEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 4555 99999999999999999999999998 99999998764
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=5e-31 Score=326.73 Aligned_cols=132 Identities=20% Similarity=0.217 Sum_probs=110.1
Q ss_pred HHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 69 CREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 69 vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
..+...+.+|+.| |+|..+++.+++|+ |+.++||+|||+ |++|++...+ .|..++|++||++||.|.++.+..++
T Consensus 46 ~~~~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 46 FVEFFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp HHHHHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 3455566789999 99999999999987 999999999998 9999987655 46779999999999999999999999
Q ss_pred hhcCC----eEEEecCCCCHHHHH----hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 146 NWLGL----SIGVNSSEISHSLKK----KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 146 ~~lgl----sv~~i~~~~~~~~r~----~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
..+|+ ++++++|+.+...+. ...+++|+||||++| .+++.. ++.+.++||||||.|+
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L-~~~l~~----------L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFL-SKHYRE----------LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH-HHCSTT----------SCCCSEEEESCHHHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHH-HHHHHH----------hccCCEEEEeChhhhh
Confidence 99999 999999998854421 112399999999998 333221 4589999999999998
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=3.1e-31 Score=313.58 Aligned_cols=134 Identities=16% Similarity=0.027 Sum_probs=98.1
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC------CcEEEEeCcHHHHHHH-HHHHHHHhhhc
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG------QGVHIVTISDYLAKRD-AEWMSVLYNWL 148 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g------~~V~VvT~n~yLA~Rd-~e~~~~l~~~l 148 (816)
++.|+|.|..++..+++|+ |+.|+||+|||++|.+|+......+ ..++|++|++.|+.|. .+++..++..
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 4689999999999988876 9999999999999999998654433 6799999999999999 8888877665
Q ss_pred CCeEEEecCCCCHHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 149 GLSIGVNSSEISHSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 149 glsv~~i~~~~~~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+++++.+.|+.+..+ +.....++|+|+||+.| .+.+...-...........+.++||||||.+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L-~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~ 149 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-ENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 149 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHH-HHHTC--------CCCGGGCSEEEEESGGGCB
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHH-HHHHhccccccccceecccCcEEEEECccccC
Confidence 589999999876432 23335789999999998 33332110001223455789999999999885
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=4.4e-30 Score=303.58 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=105.6
Q ss_pred Hhc-cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC-----CcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 76 VLK-MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG-----QGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 76 ~lg-~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g-----~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
.+| ..|+|.|..++..+++|+ |+.++||+|||++|.+|++.....+ ..++|++||+.|+.|..+.+..++..
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 345 489999999999988876 9999999999999999998654433 56999999999999999999999988
Q ss_pred cCCeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhccCCCcc-ccccceEEEecchhhhh
Q psy2371 148 LGLSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDR-VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 148 lglsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~-~~r~~~~~IvDEaDs~L 213 (816)
+|++++.+.|+.+.. .+....+++|+|+||+.| .+.+.. +.. .+..+.++||||||.+.
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L-~~~l~~------~~~~~l~~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKK------GTIPSLSIFTLMIFDECHNTS 149 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHH-HHHHHT------TSSCCGGGCSEEEEETGGGCS
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHH-HHHHhc------CcccccccccEEEEeCCCccc
Confidence 899999999987532 222234789999999998 333332 122 35789999999999987
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1e-29 Score=311.76 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=102.7
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-----CCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-----GQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-----g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
...|+|.|..++..+++|+ |+.++||+|||++|++|+...... +..|+|++||+.|+.|.++.+..++..+|+
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4589999999999998887 999999999999999999855444 667999999999999999999999999999
Q ss_pred eEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCcc-ccccceEEEecchhhhh
Q psy2371 151 SIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDR-VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 151 sv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~-~~r~~~~~IvDEaDs~L 213 (816)
+++++.|+.+...+ ....++||+|+||++| .+.+.. ... ....++++||||||.+.
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L-~~~l~~------~~~~~l~~~~liViDEaH~~~ 384 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFED------GTLTSLSIFTLMIFDECHNTT 384 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHH-HHHHHS------SSCCCGGGCSEEEEETGGGCS
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHH-HHHHHc------CccccccCCCEEEEECccccC
Confidence 99999999864432 2223689999999997 333332 122 45689999999999977
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.2e-30 Score=311.09 Aligned_cols=304 Identities=15% Similarity=0.206 Sum_probs=210.5
Q ss_pred HHHhccccchhhhhhhccccCC--------ceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 74 KRVLKMRHFDVQLIGGIALHYG--------NISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 74 ~R~lg~~p~~VQ~~~~~~L~~G--------~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
...+|+.|++.|..++..+.+| .|++++||+|||++|++|++.....|.++.|++||++||.|.++.+..++
T Consensus 362 ~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 362 IKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3457889999999999877653 39999999999999999999776789999999999999999999999999
Q ss_pred hhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 146 NWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
..+|++|++++|+++..++... -.++|+||||+.| .+. .....+.++||||+|.+-.+
T Consensus 442 ~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------~~~~~l~lVVIDEaHr~g~~---- 505 (780)
T 1gm5_A 442 SKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QED-------VHFKNLGLVIIDEQHRFGVK---- 505 (780)
T ss_dssp TCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHC-------CCCSCCCEEEEESCCCC-------
T ss_pred hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hhh-------hhccCCceEEecccchhhHH----
Confidence 9999999999999987665432 2589999999876 332 23567899999999986311
Q ss_pred cceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHH
Q psy2371 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAH 299 (816)
Q Consensus 220 pliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~ 299 (816)
.- ..+... . ...+.+.+|+|.....-..
T Consensus 506 -----------------qr----~~l~~~----------------~------~~~~vL~mSATp~p~tl~~--------- 533 (780)
T 1gm5_A 506 -----------------QR----EALMNK----------------G------KMVDTLVMSATPIPRSMAL--------- 533 (780)
T ss_dssp -----------------------CCCCSS----------------S------SCCCEEEEESSCCCHHHHH---------
T ss_pred -----------------HH----HHHHHh----------------C------CCCCEEEEeCCCCHHHHHH---------
Confidence 10 011100 0 0134455666532211000
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
..+.
T Consensus 534 ~~~g---------------------------------------------------------------------------- 537 (780)
T 1gm5_A 534 AFYG---------------------------------------------------------------------------- 537 (780)
T ss_dssp HHTC----------------------------------------------------------------------------
T ss_pred HHhC----------------------------------------------------------------------------
Confidence 0010
Q ss_pred HHHHHHHhcCeEEEc---CCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHh--------HHHHH
Q psy2371 380 AYEFQEIYKLETITV---PPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIEN--------SELLS 448 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~I---Pt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~--------se~Ls 448 (816)
.+++..+ |+.+.... .+.....+...+.+.+.+....|+.++|||++++. ++.++
T Consensus 538 --------~~~~s~i~~~p~~r~~i~------~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~ 603 (780)
T 1gm5_A 538 --------DLDVTVIDEMPPGRKEVQ------TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMY 603 (780)
T ss_dssp --------CSSCEEECCCCSSCCCCE------ECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHH
T ss_pred --------CcceeeeeccCCCCcceE------EEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHH
Confidence 0111111 22111000 01111122334555565555678889999998755 57788
Q ss_pred HHHHh---CCCCeEEEcCCc--hHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHH
Q psy2371 449 NILKK---NNLPHSVLNAKQ--HKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIK 523 (816)
Q Consensus 449 ~~L~~---~gi~~~vLnak~--~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 523 (816)
+.|++ .|+.+..+||+. .+|++.+-.+..+...|+|||+++++|+||
T Consensus 604 ~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi---------------------------- 655 (780)
T 1gm5_A 604 EYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV---------------------------- 655 (780)
T ss_dssp HSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC----------------------------
T ss_pred HHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC----------------------------
Confidence 88888 578999999984 456666655655556899999999999999
Q ss_pred HHHHHHHhhhhhhhccCceEEEEecCCC-CcchhhhhcCccCCCCCCceEEEEecc
Q psy2371 524 KLKNEWMLLHDKVISSGGLHIIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYLSL 578 (816)
Q Consensus 524 ~~~~~~~~~~~~V~~~GGLhVI~te~pe-s~rid~Q~~GRtGRqGdpG~s~~~lsl 578 (816)
|+|. +||+++.|. +...+.||+||+||.|.+|.+.++.+.
T Consensus 656 ----------P~v~-----~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 656 ----------PRAN-----VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp ----------TTCC-----EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred ----------CCCC-----EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 5665 999999875 567788999999999999999888873
No 34
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=5e-29 Score=296.74 Aligned_cols=328 Identities=19% Similarity=0.162 Sum_probs=215.3
Q ss_pred Hhcc-ccchhhhhhhcc-ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 76 VLKM-RHFDVQLIGGIA-LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~-L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
..|+ .|+|+|..++.. +++|+ |+.++||+|||+++.+|++...+ .|..+.+++|++.||.+.++.+. -+..+|+
T Consensus 25 ~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~-~~~~~g~ 103 (715)
T 2va8_A 25 KRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK-DWELIGF 103 (715)
T ss_dssp TTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG-GGGGGTC
T ss_pred hCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH-HhhcCCC
Confidence 3787 899999999987 66776 99999999999999999996555 57889999999999999998885 4455799
Q ss_pred eEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccc
Q psy2371 151 SIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNN 230 (816)
Q Consensus 151 sv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~ 230 (816)
+|+..+|+....++.. -.++|+|+||+.+ ...++. +...++.+.++||||||.+. |..+.
T Consensus 104 ~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l-~~~~~~------~~~~l~~~~~vIiDE~H~l~-~~~~~----------- 163 (715)
T 2va8_A 104 KVAMTSGDYDTDDAWL-KNYDIIITTYEKL-DSLWRH------RPEWLNEVNYFVLDELHYLN-DPERG----------- 163 (715)
T ss_dssp CEEECCSCSSSCCGGG-GGCSEEEECHHHH-HHHHHH------CCGGGGGEEEEEECSGGGGG-CTTTH-----------
T ss_pred EEEEEeCCCCCchhhc-CCCCEEEEcHHHH-HHHHhC------ChhHhhccCEEEEechhhcC-Ccccc-----------
Confidence 9999999876544433 2789999999997 333332 12235789999999999965 54331
Q ss_pred hhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhh--HHHHHHHHHHHHHHHHHHhccCcce
Q psy2371 231 AQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENG--YEKYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 231 ~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g--~~~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
..+..++..++. .+-+.+|++. ...+.+|+ .
T Consensus 164 -----~~l~~i~~~~~~--------------------------~~ii~lSATl~n~~~~~~~l-----------~----- 196 (715)
T 2va8_A 164 -----PVVESVTIRAKR--------------------------RNLLALSATISNYKQIAKWL-----------G----- 196 (715)
T ss_dssp -----HHHHHHHHHHHT--------------------------SEEEEEESCCTTHHHHHHHH-----------T-----
T ss_pred -----hHHHHHHHhccc--------------------------CcEEEEcCCCCCHHHHHHHh-----------C-----
Confidence 134444544432 4567778774 23333333 0
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
..+ ++ ..+|.. ++. ..+. +. +... ..
T Consensus 197 ----~~~--~~-~~~r~~-------------------~l~------~~~~-------~~------~~~~---------~~ 222 (715)
T 2va8_A 197 ----AEP--VA-TNWRPV-------------------PLI------EGVI-------YP------ERKK---------KE 222 (715)
T ss_dssp ----CEE--EE-CCCCSS-------------------CEE------EEEE-------EE------CSST---------TE
T ss_pred ----CCc--cC-CCCCCC-------------------Cce------EEEE-------ec------CCcc---------cc
Confidence 000 00 011110 000 0000 00 0000 00
Q ss_pred CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCC-------------
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNN------------- 455 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~g------------- 455 (816)
.. +..|.. ....+.....+...+.+ .+..+.++||||+|++.++.++..|.+..
T Consensus 223 ~~-~~~~~~--------~~~~~~~~~~~~~~~~~----~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 289 (715)
T 2va8_A 223 YN-VIFKDN--------TTKKVHGDDAIIAYTLD----SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEI 289 (715)
T ss_dssp EE-EEETTS--------CEEEEESSSHHHHHHHH----HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHH
T ss_pred ee-eecCcc--------hhhhcccchHHHHHHHH----HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 00 111110 00111112334443333 33467899999999999999999998652
Q ss_pred -----------------------CCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhh
Q psy2371 456 -----------------------LPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKK 510 (816)
Q Consensus 456 -----------------------i~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~ 510 (816)
..+..+||.....++..+.+++. .-.|+||||++++|+||
T Consensus 290 ~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidi--------------- 354 (715)
T 2va8_A 290 LKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNL--------------- 354 (715)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCC---------------
T ss_pred HHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCC---------------
Confidence 23788999976666655555433 45899999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE----ec-------CCCCcchhhhhcCccCCCC--CCceEEEEec
Q psy2371 511 NISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG----TE-------RHESRRIDNQLRGRSGRQG--DPGSSRFYLS 577 (816)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~----te-------~pes~rid~Q~~GRtGRqG--dpG~s~~~ls 577 (816)
|++. +||+ ++ .|-|...+.||+|||||.| .+|.+..+.+
T Consensus 355 -----------------------p~~~-----~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 355 -----------------------PART-----VIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp -----------------------CBSE-----EEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred -----------------------CceE-----EEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 5565 8998 77 7899999999999999988 6999988887
Q ss_pred cchh
Q psy2371 578 LDDS 581 (816)
Q Consensus 578 leD~ 581 (816)
.+|+
T Consensus 407 ~~~~ 410 (715)
T 2va8_A 407 DKED 410 (715)
T ss_dssp CGGG
T ss_pred CchH
Confidence 7664
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=4.5e-30 Score=305.50 Aligned_cols=314 Identities=17% Similarity=0.131 Sum_probs=212.6
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
.|+ .|+|+|..++..+.+|+ |+.++||+|||++|.+|++.....|..+.+++|+++||.+.++.+. -+..+|++++
T Consensus 21 ~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~-~~~~~g~~v~ 99 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK-KWEKIGLRIG 99 (702)
T ss_dssp C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT-TTTTTTCCEE
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH-HHHhcCCEEE
Confidence 677 89999999999988887 9999999999999999999766678899999999999999999885 3445699999
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhh
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQY 233 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~ 233 (816)
..+|+.+..++.. -.++|+|+||+.+ ...++. .....+.+.++||||||.+. |..+.
T Consensus 100 ~~~G~~~~~~~~~-~~~~Iiv~Tpe~l-~~~l~~------~~~~l~~~~~vIiDE~H~l~-~~~r~-------------- 156 (702)
T 2p6r_A 100 ISTGDYESRDEHL-GDCDIIVTTSEKA-DSLIRN------RASWIKAVSCLVVDEIHLLD-SEKRG-------------- 156 (702)
T ss_dssp EECSSCBCCSSCS-TTCSEEEEEHHHH-HHHHHT------TCSGGGGCCEEEETTGGGGG-CTTTH--------------
T ss_pred EEeCCCCcchhhc-cCCCEEEECHHHH-HHHHHc------ChhHHhhcCEEEEeeeeecC-CCCcc--------------
Confidence 9999876544322 3789999999997 333332 12235789999999999876 54432
Q ss_pred hHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCC
Q psy2371 234 FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNN 313 (816)
Q Consensus 234 y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~ 313 (816)
..+..++..+... .+.-+-+.+|+
T Consensus 157 --~~~~~ll~~l~~~----------------------~~~~~ii~lSA-------------------------------- 180 (702)
T 2p6r_A 157 --ATLEILVTKMRRM----------------------NKALRVIGLSA-------------------------------- 180 (702)
T ss_dssp --HHHHHHHHHHHHH----------------------CTTCEEEEEEC--------------------------------
T ss_pred --cHHHHHHHHHHhc----------------------CcCceEEEECC--------------------------------
Confidence 1233333333210 00123344444
Q ss_pred eEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEE
Q psy2371 314 KIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETIT 393 (816)
Q Consensus 314 ~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~ 393 (816)
|+.+ .++|.+.++.+++.
T Consensus 181 -------------------------------------------------------------Tl~n-~~~~~~~l~~~~~~ 198 (702)
T 2p6r_A 181 -------------------------------------------------------------TAPN-VTEIAEWLDADYYV 198 (702)
T ss_dssp -------------------------------------------------------------CCTT-HHHHHHHTTCEEEE
T ss_pred -------------------------------------------------------------CcCC-HHHHHHHhCCCccc
Confidence 4432 23333333333222
Q ss_pred cCCCCccccc----cCcCeEecChHH-------HHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC--------
Q psy2371 394 VPPNKINKRK----DLQDKIYKTMEE-------KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN-------- 454 (816)
Q Consensus 394 IPt~~p~~r~----d~~d~v~~t~~~-------K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~-------- 454 (816)
.+ .+|.... ..+...+.+... +...+.+. +..+.++||||+|++.++.++..|.+.
T Consensus 199 ~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~ 273 (702)
T 2p6r_A 199 SD-WRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENE 273 (702)
T ss_dssp CC-CCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CC-CCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChH
Confidence 21 1111100 001111111110 33333333 346788999999999999999998753
Q ss_pred ----------------------CCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCccccCccccCCCCchhhHHHhhh
Q psy2371 455 ----------------------NLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGRGTDIILGGNIDSYIKDIKK 510 (816)
Q Consensus 455 ----------------------gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~ 510 (816)
+..+..+||.....++..+.++++ .-.|+||||++++|+||
T Consensus 274 ~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi--------------- 338 (702)
T 2p6r_A 274 GLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL--------------- 338 (702)
T ss_dssp SHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC---------------
T ss_pred HHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC---------------
Confidence 134677999976666665555443 44899999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE----ec---CCCCcchhhhhcCccCCCC--CCceEEEEeccch
Q psy2371 511 NISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG----TE---RHESRRIDNQLRGRSGRQG--DPGSSRFYLSLDD 580 (816)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~----te---~pes~rid~Q~~GRtGRqG--dpG~s~~~lsleD 580 (816)
|.+. +||+ ++ .|.|...|.||+|||||.| .+|.+..+.+.+|
T Consensus 339 -----------------------p~~~-----~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 339 -----------------------PARR-----VIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp -----------------------CBSE-----EEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred -----------------------CceE-----EEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 4554 8888 44 6889999999999999988 6999988887655
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-29 Score=309.75 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=103.0
Q ss_pred HHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 75 RVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 75 R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
+..++.|+|+|..+++.+++|+ |+.++||+|||++|.+|++.....|..|.|++|+++||.|.+..+..++. .|
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~V 254 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DV 254 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----SE
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----Cc
Confidence 3456789999999999999887 99999999999999999997767788999999999999999888777655 78
Q ss_pred EEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 153 GVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
++++|+.+.. -.++|+|+||++| .+.|.. ....++.+.++||||||.|+ |.
T Consensus 255 glltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~------~~~~l~~l~lVVIDEaH~l~-d~ 305 (1108)
T 3l9o_A 255 GLMTGDITIN-----PDAGCLVMTTEIL-RSMLYR------GSEVMREVAWVIFDEVHYMR-DK 305 (1108)
T ss_dssp EEECSSCBCC-----CSCSEEEEEHHHH-HHHHHH------CSSHHHHEEEEEEETGGGTT-SH
T ss_pred cEEeCccccC-----CCCCEEEeChHHH-HHHHHc------CccccccCCEEEEhhhhhcc-cc
Confidence 8899887522 3589999999987 233322 22346789999999999988 54
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=7.5e-29 Score=295.79 Aligned_cols=318 Identities=18% Similarity=0.176 Sum_probs=213.3
Q ss_pred hcc-ccchhhhhhhcc-ccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 77 LKM-RHFDVQLIGGIA-LHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~-L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
.|+ .|+|+|..++.. +++|+ |+.++||+|||++|.+|++...+ .|..+.+++|++.||.+.++.+..+ ..+|++
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l-~~~g~~ 97 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW-EKIGLR 97 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGG-GGGTCC
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHH-HhcCCE
Confidence 787 899999999987 77777 99999999999999999996655 5888999999999999999988644 446999
Q ss_pred EEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccch
Q psy2371 152 IGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNA 231 (816)
Q Consensus 152 v~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~ 231 (816)
|+..+|+.+...+.. ..++|+|+||+.+ ...++. .....+.+.++||||||.+. |..+.
T Consensus 98 v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l-~~~~~~------~~~~l~~~~~vIiDE~H~l~-~~~r~------------ 156 (720)
T 2zj8_A 98 VAMATGDYDSKDEWL-GKYDIIIATAEKF-DSLLRH------GSSWIKDVKILVADEIHLIG-SRDRG------------ 156 (720)
T ss_dssp EEEECSCSSCCCGGG-GGCSEEEECHHHH-HHHHHH------TCTTGGGEEEEEEETGGGGG-CTTTH------------
T ss_pred EEEecCCCCcccccc-CCCCEEEECHHHH-HHHHHc------ChhhhhcCCEEEEECCcccC-CCccc------------
Confidence 999999876544332 3789999999997 233332 12235689999999999886 53331
Q ss_pred hhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhh--HHHHHHHHHHHHHHHHHHhccCcceE
Q psy2371 232 QYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENG--YEKYENILIKMALRAHVLYHKNKHYI 309 (816)
Q Consensus 232 ~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g--~~~~e~~l~~~Al~A~~l~~~~~dYi 309 (816)
..+..++..++. ..+-+.+|++. ...+.+|+ . .
T Consensus 157 ----~~~~~ll~~l~~-------------------------~~~ii~lSATl~n~~~~~~~l-----------~--~--- 191 (720)
T 2zj8_A 157 ----ATLEVILAHMLG-------------------------KAQIIGLSATIGNPEELAEWL-----------N--A--- 191 (720)
T ss_dssp ----HHHHHHHHHHBT-------------------------TBEEEEEECCCSCHHHHHHHT-----------T--E---
T ss_pred ----HHHHHHHHHhhc-------------------------CCeEEEEcCCcCCHHHHHHHh-----------C--C---
Confidence 144445555532 13556667663 22222222 0 0
Q ss_pred EeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcC
Q psy2371 310 IKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKL 389 (816)
Q Consensus 310 V~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l 389 (816)
.+ ++ ..+|. +++. ..++ + .
T Consensus 192 ----~~--~~-~~~rp-------------------~~l~-----------~~~~--~---------------------~- 210 (720)
T 2zj8_A 192 ----EL--IV-SDWRP-------------------VKLR-----------RGVF--Y---------------------Q- 210 (720)
T ss_dssp ----EE--EE-CCCCS-------------------SEEE-----------EEEE--E---------------------T-
T ss_pred ----cc--cC-CCCCC-------------------Ccce-----------EEEE--e---------------------C-
Confidence 00 00 00000 0000 0000 0 0
Q ss_pred eEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC---------------
Q psy2371 390 ETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN--------------- 454 (816)
Q Consensus 390 ~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~--------------- 454 (816)
..+..+.... .....+...+.+. +..+.++||||+|++.++.++..|.+.
T Consensus 211 ~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 275 (720)
T 2zj8_A 211 GFVTWEDGSI-----------DRFSSWEELVYDA----IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNE 275 (720)
T ss_dssp TEEEETTSCE-----------EECSSTTHHHHHH----HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred Ceeeccccch-----------hhhhHHHHHHHHH----HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 0011111000 0011223333332 345789999999999999999998753
Q ss_pred ---CC---------------CeEEEcCCchHHHHHHHHHcCCC--ccEEEecCccccCccccCCCCchhhHHHhhhcchh
Q psy2371 455 ---NL---------------PHSVLNAKQHKLEAQIIAQAGHP--KMITIATNMAGRGTDIILGGNIDSYIKDIKKNISS 514 (816)
Q Consensus 455 ---gi---------------~~~vLnak~~~rEa~ii~~Ag~~--g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~ 514 (816)
++ .+..+||.....++..+.++++. -.|+||||++++|+||
T Consensus 276 ~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi------------------- 336 (720)
T 2zj8_A 276 LADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT------------------- 336 (720)
T ss_dssp HHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC-------------------
T ss_pred HHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC-------------------
Confidence 12 37889999766666666554444 4899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhccCceEEEE----ec----CCCCcchhhhhcCccCCCC--CCceEEEEeccch
Q psy2371 515 EVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG----TE----RHESRRIDNQLRGRSGRQG--DPGSSRFYLSLDD 580 (816)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~----te----~pes~rid~Q~~GRtGRqG--dpG~s~~~lsleD 580 (816)
|.+. +||+ ++ .|.|...+.||+|||||.| .+|.+..+.+.+|
T Consensus 337 -------------------p~~~-----~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 337 -------------------PAFR-----VIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp -------------------CBSE-----EEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred -------------------CceE-----EEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 4554 8888 55 5889999999999999988 6899888887665
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=5.9e-28 Score=301.35 Aligned_cols=309 Identities=17% Similarity=0.104 Sum_probs=216.3
Q ss_pred HHHhccccchhhhhhhccccC----Cc----eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 74 KRVLKMRHFDVQLIGGIALHY----GN----ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 74 ~R~lg~~p~~VQ~~~~~~L~~----G~----Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
...+|+.|+|.|..++..+.+ |+ |++++||+|||++|++|++.....|++|.|++||+.||.|.++.+...+
T Consensus 597 ~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 597 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp HHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHh
Confidence 356899999999999987764 53 9999999999999999999877889999999999999999999999999
Q ss_pred hhcCCeEEEecCCCCHHHHHh------hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 146 NWLGLSIGVNSSEISHSLKKK------SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r~~------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
..++++++++.+..+..++.. ...+||++|||+.+ .. ......+.++||||||.+-.
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~-------~~~~~~l~lvIiDEaH~~g~----- 739 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QS-------DVKFKDLGLLIVDEEHRFGV----- 739 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HS-------CCCCSSEEEEEEESGGGSCH-----
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hC-------CccccccceEEEechHhcCh-----
Confidence 989999999998877544322 22589999999644 32 23456889999999999531
Q ss_pred cceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHH
Q psy2371 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAH 299 (816)
Q Consensus 220 pliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~ 299 (816)
....++..+.. ..+.+.||+|.........
T Consensus 740 -----------------~~~~~l~~l~~-------------------------~~~vl~lSATp~p~~l~~~-------- 769 (1151)
T 2eyq_A 740 -----------------RHKERIKAMRA-------------------------NVDILTLTATPIPRTLNMA-------- 769 (1151)
T ss_dssp -----------------HHHHHHHHHHT-------------------------TSEEEEEESSCCCHHHHHH--------
T ss_pred -----------------HHHHHHHHhcC-------------------------CCCEEEEcCCCChhhHHHH--------
Confidence 11222333322 1345566666432211110
Q ss_pred HHhccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccch
Q psy2371 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETE 379 (816)
Q Consensus 300 ~l~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te 379 (816)
T Consensus 770 -------------------------------------------------------------------------------- 769 (1151)
T 2eyq_A 770 -------------------------------------------------------------------------------- 769 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCeEEEcCCCCccccccCcCeEe-cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC--CC
Q psy2371 380 AYEFQEIYKLETITVPPNKINKRKDLQDKIY-KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN--NL 456 (816)
Q Consensus 380 ~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~-~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~--gi 456 (816)
...-.+...|.+ .|..|......+. .+......++..+ ...|.+|+|||++++.++.+++.|++. ++
T Consensus 770 -----~~~~~~~~~i~~-~~~~r~~i~~~~~~~~~~~i~~~il~~----l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~ 839 (1151)
T 2eyq_A 770 -----MSGMRDLSIIAT-PPARRLAVKTFVREYDSMVVREAILRE----ILRGGQVYYLYNDVENIQKAAERLAELVPEA 839 (1151)
T ss_dssp -----HTTTSEEEECCC-CCCBCBCEEEEEEECCHHHHHHHHHHH----HTTTCEEEEECCCSSCHHHHHHHHHHHCTTS
T ss_pred -----HhcCCCceEEec-CCCCccccEEEEecCCHHHHHHHHHHH----HhcCCeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 000001111111 0111111111111 1222233344443 346778999999999999999999987 88
Q ss_pred CeEEEcCCchHH--HHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhh
Q psy2371 457 PHSVLNAKQHKL--EAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHD 534 (816)
Q Consensus 457 ~~~vLnak~~~r--Ea~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (816)
.+.++||+..+. +..+-.+..+...|+|||+++++|+|| |
T Consensus 840 ~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi--------------------------------------p 881 (1151)
T 2eyq_A 840 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI--------------------------------------P 881 (1151)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC--------------------------------------T
T ss_pred eEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc--------------------------------------c
Confidence 999999996544 444444544456899999999999999 5
Q ss_pred hhhccCceEEEEecC-CCCcchhhhhcCccCCCCCCceEEEEeccchhh
Q psy2371 535 KVISSGGLHIIGTER-HESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 535 ~V~~~GGLhVI~te~-pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l 582 (816)
.+. +||..+. +-+...+.||+||+||.|.+|.+.++++.++.+
T Consensus 882 ~v~-----~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l 925 (1151)
T 2eyq_A 882 TAN-----TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 925 (1151)
T ss_dssp TEE-----EEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGS
T ss_pred CCc-----EEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcccc
Confidence 565 8887766 346788999999999999999998887665543
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=1.6e-28 Score=278.27 Aligned_cols=286 Identities=14% Similarity=0.084 Sum_probs=187.4
Q ss_pred ccchhhhhhhccccCCc---eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 80 RHFDVQLIGGIALHYGN---ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~---Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
.|+|+|. +++.+++|+ |+.++||+|||++|++|++..++ .|..++|++||++||.|.++.+. |++++.-
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 76 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR------GLPIRYQ 76 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc------Cceeeee
Confidence 5899996 688887766 89999999999999999987665 46789999999999999988764 6666654
Q ss_pred cCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhH
Q psy2371 156 SSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFY 235 (816)
Q Consensus 156 ~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~ 235 (816)
...... ...-+..|.++|+|.+. ..+.. ...+..+.++||||||.+ |.. +.
T Consensus 77 ~~~~~~---~~~~~~~i~~~t~~~l~-~~l~~-------~~~l~~~~~iViDEah~~--~~~----------------~~ 127 (451)
T 2jlq_A 77 TPAVKS---DHTGREIVDLMCHATFT-TRLLS-------STRVPNYNLIVMDEAHFT--DPC----------------SV 127 (451)
T ss_dssp CTTCSC---CCCSSCCEEEEEHHHHH-HHHHH-------CSCCCCCSEEEEETTTCC--SHH----------------HH
T ss_pred eccccc---cCCCCceEEEEChHHHH-HHhhC-------cccccCCCEEEEeCCccC--Ccc----------------hH
Confidence 433211 11224579999998872 22211 134568999999999966 321 11
Q ss_pred HHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeE
Q psy2371 236 KIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKI 315 (816)
Q Consensus 236 ~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v 315 (816)
....++..... . ...+.+.||+|.......+ +.
T Consensus 128 -~~~~~~~~~~~-----------------~------~~~~~i~~SAT~~~~~~~~-----------~~------------ 160 (451)
T 2jlq_A 128 -AARGYISTRVE-----------------M------GEAAAIFMTATPPGSTDPF-----------PQ------------ 160 (451)
T ss_dssp -HHHHHHHHHHH-----------------T------TSCEEEEECSSCTTCCCSS-----------CC------------
T ss_pred -HHHHHHHHhhc-----------------C------CCceEEEEccCCCccchhh-----------hc------------
Confidence 11111111100 0 0234566676632110000 00
Q ss_pred EEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcC
Q psy2371 316 IIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVP 395 (816)
Q Consensus 316 ~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IP 395 (816)
.+..++.++
T Consensus 161 -----------------------------------------------------------------------~~~~~~~~~ 169 (451)
T 2jlq_A 161 -----------------------------------------------------------------------SNSPIEDIE 169 (451)
T ss_dssp -----------------------------------------------------------------------CSSCEEEEE
T ss_pred -----------------------------------------------------------------------CCCceEecC
Confidence 001111111
Q ss_pred CCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHH
Q psy2371 396 PNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ 475 (816)
Q Consensus 396 t~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~ 475 (816)
...|. ..|.. +.+.+.+ .+.++||||+|++.++.+++.|++.|+++..||++.. +..+-.+
T Consensus 170 ~~~p~-------~~~~~-------~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~--~~~~~~f 230 (451)
T 2jlq_A 170 REIPE-------RSWNT-------GFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF--DTEYPKT 230 (451)
T ss_dssp CCCCS-------SCCSS-------SCHHHHH---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH--HHHGGGG
T ss_pred ccCCc-------hhhHH-------HHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH--HHHHHhh
Confidence 11110 00110 1111222 2458999999999999999999999999999999854 3333334
Q ss_pred cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEec-------
Q psy2371 476 AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTE------- 548 (816)
Q Consensus 476 Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te------- 548 (816)
..+...|+||||+|+||+||+ . . +||+++
T Consensus 231 ~~g~~~vLVaT~v~~~GiDip--------------------------------------~-~-----~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 231 KLTDWDFVVTTDISEMGANFR--------------------------------------A-G-----RVIDPRRCLKPVI 266 (451)
T ss_dssp GSSCCSEEEECGGGGSSCCCC--------------------------------------C-S-----EEEECCEEEEEEE
T ss_pred ccCCceEEEECCHHHhCcCCC--------------------------------------C-C-----EEEECCCcccccc
Confidence 444558999999999999994 2 2 899988
Q ss_pred -------------CCCCcchhhhhcCccCCCCC-CceEEEEeccchhh
Q psy2371 549 -------------RHESRRIDNQLRGRSGRQGD-PGSSRFYLSLDDSL 582 (816)
Q Consensus 549 -------------~pes~rid~Q~~GRtGRqGd-pG~s~~~lsleD~l 582 (816)
.|.|...|.||+|||||.|. +|.+.+|.+.++..
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~ 314 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN 314 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhh
Confidence 99999999999999999999 89888777655443
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-28 Score=296.56 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=103.1
Q ss_pred HHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 75 RVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 75 R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
+.+++.|+|.|..++..+.+|+ |+.++||+|||++|.+|++.....|..+++++|+++||.|.+..+..++. +|
T Consensus 81 ~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~v 156 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DV 156 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----CE
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----CE
Confidence 4578899999999999998887 99999999999999999886555788999999999999999888877654 78
Q ss_pred EEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhcc
Q psy2371 153 GVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEA 217 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea 217 (816)
++++|+.+.. -.++|+|+||+.| .+.|.. .....+.+.++||||||.|. |..
T Consensus 157 glltGd~~~~-----~~~~IvV~Tpe~L-~~~L~~------~~~~l~~l~lVViDEaH~l~-d~~ 208 (1010)
T 2xgj_A 157 GLMTGDITIN-----PDAGCLVMTTEIL-RSMLYR------GSEVMREVAWVIFDEVHYMR-DKE 208 (1010)
T ss_dssp EEECSSCEEC-----TTCSEEEEEHHHH-HHHHHH------TCTTGGGEEEEEEETGGGGG-CTT
T ss_pred EEEeCCCccC-----CCCCEEEEcHHHH-HHHHHc------CcchhhcCCEEEEechhhhc-ccc
Confidence 9999887532 2579999999887 222221 23456789999999999987 554
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=9e-29 Score=282.26 Aligned_cols=332 Identities=13% Similarity=0.067 Sum_probs=216.1
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
.+.|+|.|..++..+.+|+ |+.++||+|||+++++|+......++ .|+|++|++.|+.|.++.+..+..+.+++++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 4589999999998877664 99999999999999999886554566 89999999999999999998887777789999
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYF 234 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y 234 (816)
+.++.+..++ ....++|+++|++.+. ++ .....+.+.++||||+|.+...
T Consensus 191 ~~~~~~~~~~-~~~~~~I~i~T~~~l~----~~------~~~~~~~~~liIiDE~H~~~~~------------------- 240 (510)
T 2oca_A 191 IGGGASKDDK-YKNDAPVVVGTWQTVV----KQ------PKEWFSQFGMMMNDECHLATGK------------------- 240 (510)
T ss_dssp CGGGCCTTGG-GCTTCSEEEEEHHHHT----TS------CGGGGGGEEEEEEETGGGCCHH-------------------
T ss_pred EecCCccccc-cccCCcEEEEeHHHHh----hc------hhhhhhcCCEEEEECCcCCCcc-------------------
Confidence 9998765443 3457899999998751 22 1234567999999999998721
Q ss_pred HHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCe
Q psy2371 235 YKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNK 314 (816)
Q Consensus 235 ~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~ 314 (816)
....+++.+.. ..+.+.||+|.......++ ++ ..++. ..
T Consensus 241 --~~~~il~~~~~-------------------------~~~~l~lSATp~~~~~~~~---~~--~~~~~---------~~ 279 (510)
T 2oca_A 241 --SISSIISGLNN-------------------------CMFKFGLSGSLRDGKANIM---QY--VGMFG---------EI 279 (510)
T ss_dssp --HHHHHGGGCTT-------------------------CCEEEEEESCGGGCSSCHH---HH--HHHHC---------SE
T ss_pred --cHHHHHHhccc-------------------------CcEEEEEEeCCCCCcccHH---Hh--HHhhC---------Ce
Confidence 33345555532 1345566777532211111 00 00000 00
Q ss_pred EEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEc
Q psy2371 315 IIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITV 394 (816)
Q Consensus 315 v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~I 394 (816)
+ ..+.... .+. ..++..| .+..+
T Consensus 280 ~-----------------------------~~~~~~~----~~~-~~~l~~~-----------------------~~~~~ 302 (510)
T 2oca_A 280 F-----------------------------KPVTTSK----LME-DGQVTEL-----------------------KINSI 302 (510)
T ss_dssp E-----------------------------CCCCCC--------------CC-----------------------EEEEE
T ss_pred E-----------------------------EeeCHHH----Hhh-CCcCCCc-----------------------eEEEE
Confidence 0 0000000 000 1111111 11111
Q ss_pred CCCCccc-c-----ccCcC--eEecChHHHHHHHHHHHHhhccC-CCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 395 PPNKINK-R-----KDLQD--KIYKTMEEKYQAILMDIKNCYIK-EQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 395 Pt~~p~~-r-----~d~~d--~v~~t~~~K~~ai~~~i~~~~~~-grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
+...+.. + ..... ........|...+.+.+.+.... +++++|||+ ++.++.+++.|.+.|.++..+||+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~ 381 (510)
T 2oca_A 303 FLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEV 381 (510)
T ss_dssp EEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSST
T ss_pred eecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCC
Confidence 0000000 0 00000 01122335666667766655444 455556555 8999999999999999999999996
Q ss_pred hHHHH--HHHHHcCCCccEEEec-CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCce
Q psy2371 466 HKLEA--QIIAQAGHPKMITIAT-NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGL 542 (816)
Q Consensus 466 ~~rEa--~ii~~Ag~~g~VtIAT-nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL 542 (816)
...++ .+-.+......|+||| +++|+|+|| |.|.
T Consensus 382 ~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi--------------------------------------p~v~----- 418 (510)
T 2oca_A 382 DTETRNIMKTLAENGKGIIIVASYGVFSTGISV--------------------------------------KNLH----- 418 (510)
T ss_dssp THHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC--------------------------------------CSEE-----
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEcChhhccccc--------------------------------------ccCc-----
Confidence 54443 3434433345799999 999999999 5565
Q ss_pred EEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchh
Q psy2371 543 HIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 543 hVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~ 581 (816)
+||.++.|.|...+.|++||+||.|..|....+++..|+
T Consensus 419 ~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~ 457 (510)
T 2oca_A 419 HVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDD 457 (510)
T ss_dssp EEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecc
Confidence 999999999999999999999999999977777776653
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=6e-29 Score=292.43 Aligned_cols=289 Identities=15% Similarity=0.129 Sum_probs=189.3
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
-.|+|+|..+++.+++|+ |+.|+||+|||++|++|++...+. |..++|++||++||.|.++.+. |..++.-
T Consensus 170 ~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------~~~v~~~ 243 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------GLPIRYQ 243 (618)
T ss_dssp CCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC
T ss_pred ccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------CCceeEe
Confidence 478999999888888888 999999999999999999976654 5689999999999999887665 5666632
Q ss_pred cCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccC--CCccccccceEEEecchhhhhhhccCCcceeccccccchhh
Q psy2371 156 SSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFN--SNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQY 233 (816)
Q Consensus 156 ~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~--~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~ 233 (816)
.... ..++||+++ .|++.+..... .....+..+.++||||||.+ |..
T Consensus 244 ~~~l------------~~~~tp~~~-i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~--~~~---------------- 292 (618)
T 2whx_A 244 TPAV------------KSDHTGREI-VDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT--DPC---------------- 292 (618)
T ss_dssp CTTS------------SCCCCSSSC-EEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC--SHH----------------
T ss_pred cccc------------eeccCCCce-EEEEChHHHHHHHhccccccCCeEEEEECCCCC--Ccc----------------
Confidence 2111 124566665 33332211000 00123578999999999997 332
Q ss_pred hHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCC
Q psy2371 234 FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNN 313 (816)
Q Consensus 234 y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~ 313 (816)
|...+..+...++. .+.+.++||++....++.++ . .+.
T Consensus 293 ~~~~~~~i~~~l~~------------------------~~~q~il~SAT~~~~~~~~~-----------~-------~~~ 330 (618)
T 2whx_A 293 SVAARGYISTRVEM------------------------GEAAAIFMTATPPGSTDPFP-----------Q-------SNS 330 (618)
T ss_dssp HHHHHHHHHHHHHH------------------------TSCEEEEECSSCTTCCCSSC-----------C-------CSS
T ss_pred HHHHHHHHHHHhcc------------------------cCccEEEEECCCchhhhhhh-----------c-------cCC
Confidence 22244444444432 02466777876421110000 0 000
Q ss_pred eEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEE
Q psy2371 314 KIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETIT 393 (816)
Q Consensus 314 ~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~ 393 (816)
..+.
T Consensus 331 ----------------------------------------------------------------------------~~~~ 334 (618)
T 2whx_A 331 ----------------------------------------------------------------------------PIED 334 (618)
T ss_dssp ----------------------------------------------------------------------------CEEE
T ss_pred ----------------------------------------------------------------------------ceee
Confidence 0011
Q ss_pred cCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHH
Q psy2371 394 VPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQII 473 (816)
Q Consensus 394 IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 473 (816)
++...|... +..++..+.+ .+.++||||+|++.++.+++.|++.|+++..||++ +|++.+-
T Consensus 335 v~~~~~~~~--------------~~~ll~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~--~R~~~l~ 395 (618)
T 2whx_A 335 IEREIPERS--------------WNTGFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK--TFDTEYP 395 (618)
T ss_dssp EECCCCSSC--------------CSSSCHHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT--THHHHTT
T ss_pred ecccCCHHH--------------HHHHHHHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH--HHHHHHH
Confidence 111001000 0112222322 25579999999999999999999999999999996 4444444
Q ss_pred HHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhcc------------Cc
Q psy2371 474 AQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISS------------GG 541 (816)
Q Consensus 474 ~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------GG 541 (816)
.+....-.|+||||+|+||+||.+. -|... .+
T Consensus 396 ~F~~g~~~VLVaTdv~~rGiDi~v~------------------------------------~VId~g~~~~P~~~~~~~~ 439 (618)
T 2whx_A 396 KTKLTDWDFVVTTDISEMGANFRAG------------------------------------RVIDPRRCLKPVILTDGPE 439 (618)
T ss_dssp HHHHSCCSEEEECGGGGTTCCCCCS------------------------------------EEEECCEEEEEEEECSSSC
T ss_pred hhcCCCcEEEEECcHHHcCcccCce------------------------------------EEEECcceecceecccCCC
Confidence 4433456899999999999999531 22111 12
Q ss_pred eEEEEecCCCCcchhhhhcCccCCCCC-CceEEEEec
Q psy2371 542 LHIIGTERHESRRIDNQLRGRSGRQGD-PGSSRFYLS 577 (816)
Q Consensus 542 LhVI~te~pes~rid~Q~~GRtGRqGd-pG~s~~~ls 577 (816)
-.||+++.|.|...|.||+|||||.|. +|.+.+|++
T Consensus 440 ~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 440 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 256999999999999999999999975 999999997
No 43
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.95 E-value=3.4e-27 Score=290.68 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=104.0
Q ss_pred HHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 75 RVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 75 R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
+.+++.|+|.|..++..+.+|+ ++.|+||+|||++|.+|+......|..++|++|++.||.|.++.+..++. |+++
T Consensus 34 ~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v 111 (997)
T 4a4z_A 34 RSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNI 111 (997)
T ss_dssp CCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----CCE
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeE
Confidence 5678899999999999999888 99999999999999999986656778899999999999998887776543 8999
Q ss_pred EEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 153 GVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 153 ~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
++++|+.+.. -.++|+|+||+.| .+.+.. ....++.+.++||||||.++ |..+
T Consensus 112 ~~l~G~~~~~-----~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~lvViDEaH~l~-d~~~ 164 (997)
T 4a4z_A 112 GLITGDVQIN-----PDANCLIMTTEIL-RSMLYR------GADLIRDVEFVIFDEVHYVN-DQDR 164 (997)
T ss_dssp EEECSSCEEC-----TTSSEEEEEHHHH-HHHHHH------TCSGGGGEEEEEECCTTCCC-TTCT
T ss_pred EEEeCCCccC-----CCCCEEEECHHHH-HHHHHh------CchhhcCCCEEEEECccccc-ccch
Confidence 9999987522 2479999999987 333322 12345789999999999887 6543
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1.1e-27 Score=282.03 Aligned_cols=289 Identities=16% Similarity=0.098 Sum_probs=192.6
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
++..++.|.....++.+|+ |+.++||+|||++|.+|++. .|..|+|++||++||.|.++. +.+.+|.+++..
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~---l~~~~g~~vg~~ 288 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAY---MSKAHGIDPNIR 288 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHH---HHHHHSCCCEEE
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHH---HHHHhCCCeeEE
Confidence 4445555555555666666 89999999999999998874 477899999999999999874 455678888888
Q ss_pred cCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhH
Q psy2371 156 SSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFY 235 (816)
Q Consensus 156 ~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~ 235 (816)
+++.. ...+++|+|+|||+| +.+ ..+....+.++|||||| ++ |.. |.
T Consensus 289 vG~~~-----~~~~~~IlV~TPGrL----l~~------~~l~l~~l~~lVlDEAH-~l-~~~----------------~~ 335 (666)
T 3o8b_A 289 TGVRT-----ITTGAPVTYSTYGKF----LAD------GGCSGGAYDIIICDECH-ST-DST----------------TI 335 (666)
T ss_dssp CSSCE-----ECCCCSEEEEEHHHH----HHT------TSCCTTSCSEEEETTTT-CC-SHH----------------HH
T ss_pred ECcEe-----ccCCCCEEEECcHHH----HhC------CCcccCcccEEEEccch-hc-Ccc----------------HH
Confidence 88754 234789999999997 332 23456789999999995 44 332 33
Q ss_pred HHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcceEEeCCeE
Q psy2371 236 KIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKI 315 (816)
Q Consensus 236 ~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dYiV~d~~v 315 (816)
..+..+.+.++.. .....+++|++....+ . .....+
T Consensus 336 ~~l~~Il~~l~~~-----------------------~~~llil~SAT~~~~i---------------~------~~~p~i 371 (666)
T 3o8b_A 336 LGIGTVLDQAETA-----------------------GARLVVLATATPPGSV---------------T------VPHPNI 371 (666)
T ss_dssp HHHHHHHHHTTTT-----------------------TCSEEEEEESSCTTCC---------------C------CCCTTE
T ss_pred HHHHHHHHhhhhc-----------------------CCceEEEECCCCCccc---------------c------cCCcce
Confidence 2455566666531 0011345577632100 0 000000
Q ss_pred EEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcC
Q psy2371 316 IIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVP 395 (816)
Q Consensus 316 ~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IP 395 (816)
+.+. ++
T Consensus 372 ---------------------------~~v~-----------------------------------------------~~ 377 (666)
T 3o8b_A 372 ---------------------------EEVA-----------------------------------------------LS 377 (666)
T ss_dssp ---------------------------EEEE-----------------------------------------------CB
T ss_pred ---------------------------EEEe-----------------------------------------------ec
Confidence 0000 00
Q ss_pred CCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHH
Q psy2371 396 PNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ 475 (816)
Q Consensus 396 t~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~ 475 (816)
...+... ....+. + +. ..+.++||||+|++.++.+++.|++.|+++..+||+..+.+. +
T Consensus 378 ~~~~i~~--~~~~~~-------------l-~~-~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er----~ 436 (666)
T 3o8b_A 378 NTGEIPF--YGKAIP-------------I-EA-IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVI----P 436 (666)
T ss_dssp SCSSEEE--TTEEEC-------------G-GG-SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGS----C
T ss_pred ccchhHH--HHhhhh-------------h-hh-ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHH----H
Confidence 0000000 000000 0 01 146689999999999999999999999999999999665542 2
Q ss_pred cCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccC--ceEEEEec-----
Q psy2371 476 AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSG--GLHIIGTE----- 548 (816)
Q Consensus 476 Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G--GLhVI~te----- 548 (816)
.++ ..|+||||+|+||+||.+. -|...| -.||||+|
T Consensus 437 ~~~-~~VLVATdVaerGIDIdV~------------------------------------~VI~~Gl~~~~ViNyDydP~~ 479 (666)
T 3o8b_A 437 TIG-DVVVVATDALMTGYTGDFD------------------------------------SVIDCNTCVTQTVDFSLDPTF 479 (666)
T ss_dssp SSS-CEEEEECTTHHHHCCCCBS------------------------------------EEEECCEEEEEEEECCCSSSC
T ss_pred hCC-CcEEEECChHHccCCCCCc------------------------------------EEEecCccccccccccccccc
Confidence 232 2899999999999998432 222222 23566899
Q ss_pred ------CCCCcchhhhhcCccCCCCCCceEEEEeccchhhh
Q psy2371 549 ------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 549 ------~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~ 583 (816)
.|.|...|.||+||||| |.+|. ..|++.+|.-.
T Consensus 480 gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 480 TIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999999999999999 99999 88888877544
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.94 E-value=6.9e-29 Score=280.56 Aligned_cols=340 Identities=15% Similarity=0.090 Sum_probs=197.8
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe-EEE
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS-IGV 154 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls-v~~ 154 (816)
++.|+|.|..++..+.+++ |+.++||+|||+++++|+... +..++|++|+++|+.|.++.+.. +|++ +++
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~----~~~~~v~~ 163 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI----FGEEYVGE 163 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG----GCGGGEEE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh----CCCcceEE
Confidence 5789999999999877665 999999999999999998743 88999999999999986665554 5999 999
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYF 234 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y 234 (816)
+.|+.+. .++|+++|++.+ +..+. . ....+.++||||||.+. +.. |
T Consensus 164 ~~g~~~~-------~~~Ivv~T~~~l-~~~~~-~--------~~~~~~liIvDEaH~~~-~~~----------------~ 209 (472)
T 2fwr_A 164 FSGRIKE-------LKPLTVSTYDSA-YVNAE-K--------LGNRFMLLIFDEVHHLP-AES----------------Y 209 (472)
T ss_dssp BSSSCBC-------CCSEEEEEHHHH-HHTHH-H--------HTTTCSEEEEETGGGTT-STT----------------T
T ss_pred ECCCcCC-------cCCEEEEEcHHH-HHHHH-H--------hcCCCCEEEEECCcCCC-ChH----------------H
Confidence 8887642 579999999876 22221 1 12358999999999986 221 4
Q ss_pred HHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHH------HHHHHHHHHHHHHHHHhccCcce
Q psy2371 235 YKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYE------KYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 235 ~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~------~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
. . +...++. .+.+.||+|... .+..++ . .
T Consensus 210 ~-~---~~~~~~~--------------------------~~~l~lSATp~~~~~~~~~l~~~~-----------~-~--- 244 (472)
T 2fwr_A 210 V-Q---IAQMSIA--------------------------PFRLGLTATFEREDGRHEILKEVV-----------G-G--- 244 (472)
T ss_dssp H-H---HHHTCCC--------------------------SEEEEEESCCCCTTSGGGSHHHHT-----------C-C---
T ss_pred H-H---HHHhcCC--------------------------CeEEEEecCccCCCCHHHHHHHHh-----------C-C---
Confidence 4 2 2333321 234566665421 111111 0 0
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
....+.+.+-...++..++...+..+........|..+...|.......+........+.+.+.
T Consensus 245 ----------------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (472)
T 2fwr_A 245 ----------------KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM 308 (472)
T ss_dssp ----------------EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT
T ss_pred ----------------eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH
Confidence 0000000000000000000000000000000001111111111111001100000000000000
Q ss_pred CeEEEcCCCCcccccc-----CcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcC
Q psy2371 389 LETITVPPNKINKRKD-----LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d-----~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLna 463 (816)
. ....+..+.. ....+......|...+.+.+.+ + .+.++||||++++.++.+++.|. +..+|+
T Consensus 309 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~-~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 309 A-----SGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-H-RKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp T-----TCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-T-SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred H-----hccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-C-CCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 0 0000000000 0011223345678877777765 3 57789999999999999999984 446788
Q ss_pred Cc--hHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy2371 464 KQ--HKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGG 541 (816)
Q Consensus 464 k~--~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 541 (816)
+. .+|+..+-.+......|+|||+|+|+|+|+ |.|.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldl--------------------------------------p~~~---- 414 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDV--------------------------------------PDAN---- 414 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCS--------------------------------------CCBS----
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCccc--------------------------------------ccCc----
Confidence 74 455555555554566899999999999999 5565
Q ss_pred eEEEEecCCCCcchhhhhcCccCCCCCC-ceEEE
Q psy2371 542 LHIIGTERHESRRIDNQLRGRSGRQGDP-GSSRF 574 (816)
Q Consensus 542 LhVI~te~pes~rid~Q~~GRtGRqGdp-G~s~~ 574 (816)
+||+++.|.|...|.|++||+||.|.. +.+.+
T Consensus 415 -~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 415 -VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp -EEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred -EEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 999999999999999999999999954 45544
No 46
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.94 E-value=4.8e-27 Score=266.84 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=84.2
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhh
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKK 510 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~ 510 (816)
+.++||||+|++.++.+++.|++.|+++..||++ +|+..+-.+..+...|+||||+++||+||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~--~R~~~~~~f~~g~~~iLVaT~v~~~GiDip-------------- 253 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK--SYDTEYPKCKNGDWDFVITTDISEMGANFG-------------- 253 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT--CCCCCGGGSSSCCCSEEEESSCC---CCCS--------------
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH--HHHHHHhhccCCCceEEEECChHHhCeecC--------------
Confidence 5679999999999999999999999999999996 333333233333558999999999999994
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE--------------------ecCCCCcchhhhhcCccCCCCC-C
Q psy2371 511 NISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG--------------------TERHESRRIDNQLRGRSGRQGD-P 569 (816)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~--------------------te~pes~rid~Q~~GRtGRqGd-p 569 (816)
. . +||+ ++.|.|...|.||+|||||.|. +
T Consensus 254 ------------------------~-~-----~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~ 303 (459)
T 2z83_A 254 ------------------------A-S-----RVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV 303 (459)
T ss_dssp ------------------------C-S-----EEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC
T ss_pred ------------------------C-C-----EEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC
Confidence 2 2 7887 7799999999999999999998 9
Q ss_pred ceEEEEeccc
Q psy2371 570 GSSRFYLSLD 579 (816)
Q Consensus 570 G~s~~~lsle 579 (816)
|.+..|++.+
T Consensus 304 G~~~~~~~~~ 313 (459)
T 2z83_A 304 GDEYHYGGAT 313 (459)
T ss_dssp CEEEEECSCC
T ss_pred CeEEEEEccc
Confidence 9999999874
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=4.6e-27 Score=278.66 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=86.6
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhh
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIK 509 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~ 509 (816)
.+.++||||+|++.++.+++.|++.|+++..+||+ +|+..+-.+......|+||||+++||+||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~--eR~~v~~~F~~g~~~VLVaTdv~e~GIDip------------- 473 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK--SYDTEYPKCKNGDWDFVITTDISEMGANFG------------- 473 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS--SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-------------
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH--HHHHHHHHHHCCCceEEEECchhhcceeeC-------------
Confidence 46789999999999999999999999999999995 455444444444558999999999999994
Q ss_pred hcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEE--------------------ecCCCCcchhhhhcCccCCC-CC
Q psy2371 510 KNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIG--------------------TERHESRRIDNQLRGRSGRQ-GD 568 (816)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~--------------------te~pes~rid~Q~~GRtGRq-Gd 568 (816)
|. +||+ ++.|.|...|.||+|||||. |.
T Consensus 474 --------------------------v~-----~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~ 522 (673)
T 2wv9_A 474 --------------------------AS-----RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQ 522 (673)
T ss_dssp --------------------------CS-----EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSC
T ss_pred --------------------------Cc-----EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCC
Confidence 33 6776 67899999999999999999 89
Q ss_pred CceEEEEec
Q psy2371 569 PGSSRFYLS 577 (816)
Q Consensus 569 pG~s~~~ls 577 (816)
+|.+.+|++
T Consensus 523 ~G~ai~l~~ 531 (673)
T 2wv9_A 523 IGDEYHYGG 531 (673)
T ss_dssp CCEEEEECS
T ss_pred CCEEEEEEe
Confidence 999999963
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.94 E-value=1e-26 Score=262.93 Aligned_cols=108 Identities=25% Similarity=0.322 Sum_probs=82.4
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhh
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKK 510 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~ 510 (816)
+.++||||+|++.++.+++.|++.|+++..+||+ +|+..+-.+......|+||||+++||+||++.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~--~R~~~~~~F~~g~~~vLVaT~v~e~GiDipv~------------ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK--TFEREYPTIKQKKPDFILATDIAEMGANLCVE------------ 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS--SCC--------CCCSEEEESSSTTCCTTCCCS------------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch--hHHHHHhhhcCCCceEEEECChhheeeccCce------------
Confidence 5689999999999999999999999999999994 34444444444455899999999999999521
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhc-----------cCceEEEEecCCCCcchhhhhcCccCCC-CCCceEEEEe
Q psy2371 511 NISSEVKKKNKIKKLKNEWMLLHDKVIS-----------SGGLHIIGTERHESRRIDNQLRGRSGRQ-GDPGSSRFYL 576 (816)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~GGLhVI~te~pes~rid~Q~~GRtGRq-GdpG~s~~~l 576 (816)
-|.. .+--+||+++.|.+...|.||+|||||. |.+|.+.+|+
T Consensus 243 ------------------------~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 243 ------------------------RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ------------------------EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ------------------------EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 1110 0111445699999999999999999997 7899999996
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.93 E-value=4.1e-26 Score=274.56 Aligned_cols=307 Identities=16% Similarity=0.150 Sum_probs=194.3
Q ss_pred ccccchhhhhhhcccc-CCc--eeeecCCCCchHHHHHHHHHHH--h-c--CCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 78 KMRHFDVQLIGGIALH-YGN--ISEMQTGEGKTLVATLAAYLNS--L-S--GQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~-~G~--Iaem~TGEGKTL~~~Lpa~l~a--L-~--g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
|..|.++|..+++.+. .|+ ++.++||+|||+ ++|+++.. . . |..+.|++|+++||.+.++.+ ...+|
T Consensus 91 ~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l---~~~~~ 165 (773)
T 2xau_A 91 RELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRV---AEEMD 165 (773)
T ss_dssp TTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHH---HHHTT
T ss_pred hcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHH---HHHhC
Confidence 4679999999998665 444 899999999999 56666422 2 2 556999999999999988754 44455
Q ss_pred CeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhh-hhhhccCCcceeccccc
Q psy2371 150 LSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS-ILIDEARTPLIISGEIK 228 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs-~LiDea~tpliisg~~~ 228 (816)
++++..+|.....+......++|+|+|||.+. +.+.. ...+..+.++||||||. +| |..
T Consensus 166 ~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~-r~l~~-------~~~l~~~~~lIlDEah~R~l-d~d----------- 225 (773)
T 2xau_A 166 VKLGEEVGYSIRFENKTSNKTILKYMTDGMLL-REAME-------DHDLSRYSCIILDEAHERTL-ATD----------- 225 (773)
T ss_dssp CCBTTTEEEEETTEEECCTTCSEEEEEHHHHH-HHHHH-------STTCTTEEEEEECSGGGCCH-HHH-----------
T ss_pred CchhheecceeccccccCCCCCEEEECHHHHH-HHHhh-------CccccCCCEEEecCcccccc-chH-----------
Confidence 55443333211111112236799999999983 22221 12356899999999996 55 421
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHHhccCcce
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHY 308 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l~~~~~dY 308 (816)
..+. .+..+....+ ..+.+.+|++-. .+.+ + .+|..
T Consensus 226 ---~~~~-~l~~l~~~~~--------------------------~~~iIl~SAT~~--~~~l-------~-~~~~~---- 261 (773)
T 2xau_A 226 ---ILMG-LLKQVVKRRP--------------------------DLKIIIMSATLD--AEKF-------Q-RYFND---- 261 (773)
T ss_dssp ---HHHH-HHHHHHHHCT--------------------------TCEEEEEESCSC--CHHH-------H-HHTTS----
T ss_pred ---HHHH-HHHHHHHhCC--------------------------CceEEEEecccc--HHHH-------H-HHhcC----
Confidence 0111 2333322221 245666766542 1111 1 11110
Q ss_pred EEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHHHHHHHhc
Q psy2371 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYK 388 (816)
Q Consensus 309 iV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~ 388 (816)
..++.+ . |+. |.
T Consensus 262 ----~~vi~v---~-----gr~--------------------------------------------------------~p 273 (773)
T 2xau_A 262 ----APLLAV---P-----GRT--------------------------------------------------------YP 273 (773)
T ss_dssp ----CCEEEC---C-----CCC--------------------------------------------------------CC
T ss_pred ----CCcccc---c-----Ccc--------------------------------------------------------cc
Confidence 001000 0 000 00
Q ss_pred CeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhc--cCCCcEEEEEcccHhHHHHHHHHHh-----------CC
Q psy2371 389 LETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCY--IKEQPVLVGTTSIENSELLSNILKK-----------NN 455 (816)
Q Consensus 389 l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~--~~grpVLVft~si~~se~Ls~~L~~-----------~g 455 (816)
+.+..+|. ...++..+++..+...+ ..+.++||||++++.++.++..|.+ .+
T Consensus 274 v~~~~~~~---------------~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~ 338 (773)
T 2xau_A 274 VELYYTPE---------------FQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP 338 (773)
T ss_dssp EEEECCSS---------------CCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred eEEEEecC---------------CchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 11111111 01122333333333322 2356899999999999999999985 68
Q ss_pred CCeEEEcCCchHHHHHHHHHcCC-----Cc--cEEEecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHH
Q psy2371 456 LPHSVLNAKQHKLEAQIIAQAGH-----PK--MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNE 528 (816)
Q Consensus 456 i~~~vLnak~~~rEa~ii~~Ag~-----~g--~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (816)
+.+..+||.....++..+-+.+. .| .|+||||+|++|+||
T Consensus 339 ~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidI--------------------------------- 385 (773)
T 2xau_A 339 LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI--------------------------------- 385 (773)
T ss_dssp EEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCC---------------------------------
T ss_pred eEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCc---------------------------------
Confidence 88999999977666665555554 44 799999999999999
Q ss_pred HHhhhhhhhccCceEEEEecC------------------CCCcchhhhhcCccCCCCCCceEEEEeccch
Q psy2371 529 WMLLHDKVISSGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 529 ~~~~~~~V~~~GGLhVI~te~------------------pes~rid~Q~~GRtGRqGdpG~s~~~lsleD 580 (816)
|+|. +||++++ |.|...|.||+|||||. .+|.+..+++.+|
T Consensus 386 -----p~v~-----~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 386 -----DGIV-----YVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp -----TTEE-----EEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred -----CCeE-----EEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 5676 9999888 88999999999999999 8999988887655
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.92 E-value=1.1e-24 Score=253.74 Aligned_cols=336 Identities=13% Similarity=0.084 Sum_probs=182.8
Q ss_pred ccccchhhhhhhccccC----C--c-eeeecCCCCchHHHHHHHHHHHh---------cCCcEEEEeCcHHHHHHHHHHH
Q psy2371 78 KMRHFDVQLIGGIALHY----G--N-ISEMQTGEGKTLVATLAAYLNSL---------SGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~----G--~-Iaem~TGEGKTL~~~Lpa~l~aL---------~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
+..|+|.|..|+..+.+ | + ++.|+||+|||++++.++..... .++.|+|++|+++|+.|...
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~-- 253 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD-- 253 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC------------
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH--
Confidence 45799999999987643 3 2 88999999999997665543222 34789999999999998661
Q ss_pred HHHhhhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcc
Q psy2371 142 SVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL 221 (816)
Q Consensus 142 ~~l~~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpl 221 (816)
..++.+|..++.+.++. ...+++|+++|++.|. +.+...- .........++++||||||++.....
T Consensus 254 -~~~~~~~~~~~~~~~~~------~~~~~~I~v~T~~~l~-~~~~~~~--~~~~~~~~~~~lvIiDEaH~~~~~~~---- 319 (590)
T 3h1t_A 254 -KTFTPFGDARHKIEGGK------VVKSREIYFAIYQSIA-SDERRPG--LYKEFPQDFFDLIIIDECHRGSARDN---- 319 (590)
T ss_dssp --CCTTTCSSEEECCC--------CCSSCSEEEEEGGGC-------CC--GGGGSCTTSCSEEEESCCC-----------
T ss_pred -HHHHhcchhhhhhhccC------CCCCCcEEEEEhhhhc-ccccccc--ccccCCCCccCEEEEECCccccccch----
Confidence 34445677777666542 2246799999999983 2221100 01123345689999999999873211
Q ss_pred eeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHHHHHHHHHHH
Q psy2371 222 IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVL 301 (816)
Q Consensus 222 iisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~~~Al~A~~l 301 (816)
. ....++..++. .+.+.||+|.......-+ ..+
T Consensus 320 -------------~-~~~~il~~~~~--------------------------~~~l~lTATP~~~~~~~~-------~~~ 352 (590)
T 3h1t_A 320 -------------S-NWREILEYFEP--------------------------AFQIGMTATPLREDNRDT-------YRY 352 (590)
T ss_dssp ----------------CHHHHHHSTT--------------------------SEEEEEESSCSCTTTHHH-------HHH
T ss_pred -------------H-HHHHHHHhCCc--------------------------ceEEEeccccccccchhH-------HHH
Confidence 1 22234444432 356777777432110000 011
Q ss_pred hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371 302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY 381 (816)
Q Consensus 302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~ 381 (816)
|.. ..+...+.++++
T Consensus 353 f~~------------------------~~~~~~~~~~i~----------------------------------------- 367 (590)
T 3h1t_A 353 FGN------------------------PIYTYSLRQGID----------------------------------------- 367 (590)
T ss_dssp SCS------------------------CSEEECHHHHHH-----------------------------------------
T ss_pred cCC------------------------ceEecCHHHHhh-----------------------------------------
Confidence 110 001111122211
Q ss_pred HHHHHhc--CeEEEcCCCCcccc------------ccCcCeEecC--------hHHHHHHHHHHHHh---hccCCCcEEE
Q psy2371 382 EFQEIYK--LETITVPPNKINKR------------KDLQDKIYKT--------MEEKYQAILMDIKN---CYIKEQPVLV 436 (816)
Q Consensus 382 e~~~~Y~--l~vv~IPt~~p~~r------------~d~~d~v~~t--------~~~K~~ai~~~i~~---~~~~grpVLV 436 (816)
.-|- ..++.+++...... ....+..|.. ...+...+++.+.+ ....+.++||
T Consensus 368 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lV 444 (590)
T 3h1t_A 368 ---DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIV 444 (590)
T ss_dssp ---HTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ---CCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 1111 11222322211000 0000011111 12233344444322 2235578999
Q ss_pred EEcccHhHHHHHHHHHhCCCC--------eEEEcCCchH-HHHHHHHHcCCCcc---EEEecCccccCccccCCCCchhh
Q psy2371 437 GTTSIENSELLSNILKKNNLP--------HSVLNAKQHK-LEAQIIAQAGHPKM---ITIATNMAGRGTDIILGGNIDSY 504 (816)
Q Consensus 437 ft~si~~se~Ls~~L~~~gi~--------~~vLnak~~~-rEa~ii~~Ag~~g~---VtIATnmAGRGtDI~l~g~~~~~ 504 (816)
||+|++.++.+++.|.+.+.. +..+||...+ |+..+-.+...... |+|||+|+++|+||
T Consensus 445 F~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi--------- 515 (590)
T 3h1t_A 445 FCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDA--------- 515 (590)
T ss_dssp EESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC---------
T ss_pred EECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccc---------
Confidence 999999999999999876543 6778998665 66666555543333 89999999999999
Q ss_pred HHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC--CceEEEEeccchhh
Q psy2371 505 IKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD--PGSSRFYLSLDDSL 582 (816)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd--pG~s~~~lsleD~l 582 (816)
|.|. +||+++.|.|...|.|++||+||-|. .+...+++..-...
T Consensus 516 -----------------------------p~v~-----~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g~~ 561 (590)
T 3h1t_A 516 -----------------------------PTCK-----NVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSA 561 (590)
T ss_dssp -----------------------------TTEE-----EEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSSSH
T ss_pred -----------------------------hhee-----EEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecCCcH
Confidence 5666 99999999999999999999999886 44555555544333
Q ss_pred hhhcC
Q psy2371 583 LKFFS 587 (816)
Q Consensus 583 ~~~~~ 587 (816)
...|.
T Consensus 562 ~~~f~ 566 (590)
T 3h1t_A 562 TQNFA 566 (590)
T ss_dssp HHHTC
T ss_pred HHHcc
Confidence 33443
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=2.3e-24 Score=276.94 Aligned_cols=130 Identities=20% Similarity=0.141 Sum_probs=100.5
Q ss_pred ccchhhhhhhccccCC-c--eeeecCCCCchHHHHHHHHHHHhc--CCcEEEEeCcHHHHHHHHHHHHHH-hhhcCCeEE
Q psy2371 80 RHFDVQLIGGIALHYG-N--ISEMQTGEGKTLVATLAAYLNSLS--GQGVHIVTISDYLAKRDAEWMSVL-YNWLGLSIG 153 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G-~--Iaem~TGEGKTL~~~Lpa~l~aL~--g~~V~VvT~n~yLA~Rd~e~~~~l-~~~lglsv~ 153 (816)
.++|+|..+++.+.++ + ++.++||+|||++|.+|++...+. |..|.+++|+++||.|.+..+... ...+|++|+
T Consensus 926 ~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~ 1005 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVV 1005 (1724)
T ss_dssp BCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEE
Confidence 4789999999988543 3 899999999999999999854443 456999999999999999887664 467999999
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
..+|+.+...+.. -.+||+++||+++ |.|..+. ......+.+.++|+||+|.+. |+
T Consensus 1006 ~ltGd~~~~~~~~-~~~~IiV~TPEkl--d~llr~~---~~~~~l~~v~lvViDE~H~l~-d~ 1061 (1724)
T 4f92_B 1006 LLTGETSTDLKLL-GKGNIIISTPEKW--DILSRRW---KQRKNVQNINLFVVDEVHLIG-GE 1061 (1724)
T ss_dssp ECCSCHHHHHHHH-HHCSEEEECHHHH--HHHHTTT---TTCHHHHSCSEEEECCGGGGG-ST
T ss_pred EEECCCCcchhhc-CCCCEEEECHHHH--HHHHhCc---ccccccceeeEEEeechhhcC-CC
Confidence 9999876554432 3689999999986 4433322 122345789999999999665 54
No 52
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.91 E-value=1e-22 Score=241.33 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=82.2
Q ss_pred cEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH--HHHHcC--CCccEEEecCccccCccccCCCCchhhHHHh
Q psy2371 433 PVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ--IIAQAG--HPKMITIATNMAGRGTDIILGGNIDSYIKDI 508 (816)
Q Consensus 433 pVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~--ii~~Ag--~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~ 508 (816)
..+|||.|++.++.++..|.+.|+.+.++||.....++. +-.+.- +...|+||||+++||+||.+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v----------- 390 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSI----------- 390 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCB-----------
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCc-----------
Confidence 348899999999999999999999999999996555443 333432 23479999999999999943
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecC--------------CCCcchhhhhcCccCCCCCC---ce
Q psy2371 509 KKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTER--------------HESRRIDNQLRGRSGRQGDP---GS 571 (816)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~--------------pes~rid~Q~~GRtGRqGdp---G~ 571 (816)
. +||+++. |.|...|.||+|||||.|.. |.
T Consensus 391 ----------------------------~-----~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~ 437 (677)
T 3rc3_A 391 ----------------------------R-----RIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 437 (677)
T ss_dssp ----------------------------S-----EEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEE
T ss_pred ----------------------------c-----EEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEE
Confidence 2 8999998 77899999999999999965 54
Q ss_pred EEEEeccch
Q psy2371 572 SRFYLSLDD 580 (816)
Q Consensus 572 s~~~lsleD 580 (816)
.+++..+|
T Consensus 438 -v~~l~~~d 445 (677)
T 3rc3_A 438 -VTTMNHED 445 (677)
T ss_dssp -EEESSTTH
T ss_pred -EEEEecch
Confidence 44454444
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=1.4e-24 Score=244.71 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=85.5
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhh
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKK 510 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~ 510 (816)
+.++||||+|++.++.+++.|++.|+++..+||+ +++..+-.+..+...|+||||+++||+||+.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~--~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~------------- 235 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK--TFESEYPKCKSEKWDFVITTDISEMGANFKA------------- 235 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--THHHHTTHHHHSCCSEEEECGGGGTSCCCCC-------------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--cHHHHHHhhcCCCCeEEEECchHHcCcccCC-------------
Confidence 4479999999999999999999999999999997 4444444444445689999999999999952
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhcc---------CceEEEEecCCCCcchhhhhcCccCCCCC-CceEEEEe
Q psy2371 511 NISSEVKKKNKIKKLKNEWMLLHDKVISS---------GGLHIIGTERHESRRIDNQLRGRSGRQGD-PGSSRFYL 576 (816)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---------GGLhVI~te~pes~rid~Q~~GRtGRqGd-pG~s~~~l 576 (816)
..|... .+-.||+++.|.+...|.||+||+||.|. +|.+.+|.
T Consensus 236 -----------------------~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 236 -----------------------DRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp -----------------------SEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred -----------------------cEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 122111 12358999999999999999999999995 66666655
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=4.9e-24 Score=273.97 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=101.1
Q ss_pred ccchhhhhhhcccc-CCc--eeeecCCCCchHHHHHHHHHHHh-----------cCCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 80 RHFDVQLIGGIALH-YGN--ISEMQTGEGKTLVATLAAYLNSL-----------SGQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~-~G~--Iaem~TGEGKTL~~~Lpa~l~aL-----------~g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
.++++|..+.+.++ .|+ ++.++||+|||++|.||++...+ .|..|++++|++.||.+.+..+...+
T Consensus 79 ~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp BCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 57899999998654 444 99999999999999999984332 24569999999999999999999999
Q ss_pred hhcCCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 146 NWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
..+|++|+..+|+++...+. ...+||+++||..+ |.|..+. ......+.+.++|||||| +|-|+
T Consensus 159 ~~~gi~V~~~tGd~~~~~~~-~~~~~IlVtTpEkl--d~llr~~---~~~~~l~~v~~vIiDEvH-~l~d~ 222 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCKEE-ISATQIIVCTPEKW--DIITRKG---GERTYTQLVRLIILDEIH-LLHDD 222 (1724)
T ss_dssp TTTTCCEEECCSSCSSCCTT-GGGCSEEEECHHHH--HHHTTSS---TTHHHHTTEEEEEETTGG-GGGST
T ss_pred hhCCCEEEEEECCCCCCccc-cCCCCEEEECHHHH--HHHHcCC---ccchhhcCcCEEEEecch-hcCCc
Confidence 99999999999998643322 24689999999885 4433221 112235789999999999 44343
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.89 E-value=4.1e-22 Score=245.32 Aligned_cols=123 Identities=12% Similarity=0.163 Sum_probs=103.7
Q ss_pred cChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh-CCCCeEEEcCCc--hHHHHHHHHHcCCC--ccEEEe
Q psy2371 411 KTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK-NNLPHSVLNAKQ--HKLEAQIIAQAGHP--KMITIA 485 (816)
Q Consensus 411 ~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~-~gi~~~vLnak~--~~rEa~ii~~Ag~~--g~VtIA 485 (816)
.....|..++.+.+.. ..+.++||||+++..++.++..|.. .|+++..+||+. .+|++.+-.+...+ -.|+||
T Consensus 485 ~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp TTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred cCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 4456788888887765 3567899999999999999999995 699999999984 56666666665554 679999
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCC
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGR 565 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGR 565 (816)
|+++|+|+|+ |.+. +||+++.|.+...|.|++||+||
T Consensus 563 T~v~~~GlDl--------------------------------------~~~~-----~VI~~d~p~~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 563 SEIGSEGRNF--------------------------------------QFAS-----HMVMFDLPFNPDLLEQRIGRLDR 599 (968)
T ss_dssp SCCTTCSSCC--------------------------------------TTCC-----EEECSSCCSSHHHHHHHHHTTSC
T ss_pred cchhhcCCCc--------------------------------------ccCc-----EEEEecCCCCHHHHHHHhhcccc
Confidence 9999999999 4555 99999999999999999999999
Q ss_pred CCCCceEEEEecc
Q psy2371 566 QGDPGSSRFYLSL 578 (816)
Q Consensus 566 qGdpG~s~~~lsl 578 (816)
.|+.|.+.+|...
T Consensus 600 ~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 600 IGQAHDIQIHVPY 612 (968)
T ss_dssp SSSCSCCEEEEEE
T ss_pred CCCCceEEEEEec
Confidence 9999987766543
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.87 E-value=4e-22 Score=226.79 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC-CCCeEEEcCCch--HHHHHHHHHcCC-Cc-cEEEec
Q psy2371 412 TMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN-NLPHSVLNAKQH--KLEAQIIAQAGH-PK-MITIAT 486 (816)
Q Consensus 412 t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~-gi~~~vLnak~~--~rEa~ii~~Ag~-~g-~VtIAT 486 (816)
....|..++.+.+.+....|.++||||.++..++.++..|... |+++..+||+.. +|++.+-.+... .. .++|||
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 3467888888888877778899999999999999999999986 999999999965 444444444322 23 379999
Q ss_pred CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC
Q psy2371 487 NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 487 nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq 566 (816)
+++|+|+|+ +.+. +||+++.|-|+..|.|++||++|.
T Consensus 402 ~~~~~Glnl--------------------------------------~~~~-----~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 402 KAGGFGINL--------------------------------------TSAN-----RVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp CCC-CCCCC--------------------------------------TTCS-----EEEESSCCSCC---CHHHHTTTTT
T ss_pred ccccCCCch--------------------------------------hhCC-----EEEEeCCCCCcchHHHHHHHHHHc
Confidence 999999999 3444 999999999999999999999999
Q ss_pred CCCceEEE
Q psy2371 567 GDPGSSRF 574 (816)
Q Consensus 567 GdpG~s~~ 574 (816)
|..+....
T Consensus 439 Gq~~~v~v 446 (500)
T 1z63_A 439 GQTRNVIV 446 (500)
T ss_dssp TTTSCEEE
T ss_pred CCCCeeEE
Confidence 99887643
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=1.7e-21 Score=239.98 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=83.9
Q ss_pred cccchhhhhhhccccC----------------CceeeecCCCCchHHHHHHHHHHHhc----CCcEEEEeCcHHHHHHHH
Q psy2371 79 MRHFDVQLIGGIALHY----------------GNISEMQTGEGKTLVATLAAYLNSLS----GQGVHIVTISDYLAKRDA 138 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~----------------G~Iaem~TGEGKTL~~~Lpa~l~aL~----g~~V~VvT~n~yLA~Rd~ 138 (816)
+.|+|.|..|+..+.+ +-++.|.||+|||+++ +++. ..+. +..|+||||+++|+.|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAA-RLATELDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHH-HHHTTCTTCCEEEEEECGGGCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHH-HHHHhcCCCceEEEEeCcHHHHHHHH
Confidence 5799999999987643 2299999999999997 6665 3332 257999999999999988
Q ss_pred HHHHHHhhhcCCeEEEecCCCCH-HHHHh--hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 139 EWMSVLYNWLGLSIGVNSSEISH-SLKKK--SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 139 e~~~~l~~~lglsv~~i~~~~~~-~~r~~--~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+.+..+... .+.++.+. ..+.. .-.++|+++|++.|. +.+... .......++.++||||||++.
T Consensus 348 ~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~-~~l~~~----~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 348 KEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLN-NLMKAE----SDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHH-HHHHHC----CCCGGGGSCEEEEEESCCTTH
T ss_pred HHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHH-HHHhcc----cchhccccccEEEEEccchhc
Confidence 777664431 23343332 22221 246899999999983 222221 111133467899999999987
No 58
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.85 E-value=7.2e-21 Score=196.98 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=135.1
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc--------CCcEEEEeCcHHHHHHHHHHHHHHh
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS--------GQGVHIVTISDYLAKRDAEWMSVLY 145 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~--------g~~V~VvT~n~yLA~Rd~e~~~~l~ 145 (816)
.|+. |+|+|..+++.+.+|+ ++.|+||+|||++|++|++..... |..++|++||++||.|.++++..+.
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 5775 9999999999998887 999999999999999999976552 5569999999999999999999999
Q ss_pred hhcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCccee
Q psy2371 146 NWLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLII 223 (816)
Q Consensus 146 ~~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tplii 223 (816)
..+|+++++++|+.+.... ....+++|+|+||+++ .+++... ....+.+.++||||||.++ +.+
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~~~------ 192 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL-IDFLECG------KTNLRRTTYLVLDEADRML-DMG------ 192 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SCCCTTCCEEEETTHHHHH-HTT------
T ss_pred hhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CCCcccccEEEEeCHHHHh-hhC------
Confidence 9999999999999885443 2334789999999998 5665432 2345789999999999988 543
Q ss_pred ccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 224 SGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 224 sg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..+++ ..+.+.||++....+++++
T Consensus 193 ----------~~~~~~~i~~~~~~-------------------------~~q~~~~SAT~~~~~~~~~ 225 (242)
T 3fe2_A 193 ----------FEPQIRKIVDQIRP-------------------------DRQTLMWSATWPKEVRQLA 225 (242)
T ss_dssp ----------CHHHHHHHHTTSCS-------------------------SCEEEEEESCCCHHHHHHH
T ss_pred ----------cHHHHHHHHHhCCc-------------------------cceEEEEEeecCHHHHHHH
Confidence 33367777777754 3567788999888777765
No 59
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=8.6e-22 Score=212.53 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=107.3
Q ss_pred eEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc--hHHHHHHHHHcCCCccEEEe
Q psy2371 408 KIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ--HKLEAQIIAQAGHPKMITIA 485 (816)
Q Consensus 408 ~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~--~~rEa~ii~~Ag~~g~VtIA 485 (816)
.++.+..+|+.++.+.+... .+.++||||+|++.++.++..|...|+++..|||+. .+|+..+-.+..+...|+||
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVa 84 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVA 84 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEE
T ss_pred EEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEE
Confidence 45566778999988877654 367899999999999999999999999999999994 55565555555556689999
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCC
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGR 565 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGR 565 (816)
||+|+||+|| |+|. |||++++|.|...|.||+|||||
T Consensus 85 T~va~~Gidi--------------------------------------~~v~-----~VI~~d~p~s~~~y~Qr~GRagR 121 (300)
T 3i32_A 85 TDVAARGLDI--------------------------------------PQVD-----LVVHYRMPDRAEAYQHRSGRTGR 121 (300)
T ss_dssp CSTTTCSTTC--------------------------------------CCCS-----EEEESSCCSSTTHHHHHHTCCC-
T ss_pred echhhcCccc--------------------------------------ccee-----EEEEcCCCCCHHHHHHHccCcCc
Confidence 9999999999 5565 99999999999999999999999
Q ss_pred CCCCceEEEEeccchhh
Q psy2371 566 QGDPGSSRFYLSLDDSL 582 (816)
Q Consensus 566 qGdpG~s~~~lsleD~l 582 (816)
+|++|.+.+|++.+|..
T Consensus 122 ~g~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 122 AGRGGRVVLLYGPRERR 138 (300)
T ss_dssp ----CEEEEEECSSTHH
T ss_pred CCCCceEEEEeChHHHH
Confidence 99999999999988743
No 60
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=9.3e-22 Score=201.16 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=108.3
Q ss_pred CeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH--HHHHcCCCccEEE
Q psy2371 407 DKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ--IIAQAGHPKMITI 484 (816)
Q Consensus 407 d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~--ii~~Ag~~g~VtI 484 (816)
..+.....+|+.++.+.+... .+.++||||+|+..++.++..|...|+++..+||+....++. +-.+......|+|
T Consensus 9 ~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 9 EAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp EEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 345566788999888877643 467899999999999999999999999999999996554444 4444444557999
Q ss_pred ecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccC
Q psy2371 485 ATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSG 564 (816)
Q Consensus 485 ATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtG 564 (816)
|||+|+||+|| |+|. +||+++.|.|...|.||+||||
T Consensus 87 aT~~~~~Gidi--------------------------------------~~v~-----~Vi~~~~p~~~~~~~qr~GR~g 123 (212)
T 3eaq_A 87 ATDVAARGLDI--------------------------------------PQVD-----LVVHYRLPDRAEAYQHRSGRTG 123 (212)
T ss_dssp ECTTTTCSSSC--------------------------------------CCBS-----EEEESSCCSSHHHHHHHHTTBC
T ss_pred ecChhhcCCCC--------------------------------------ccCc-----EEEECCCCcCHHHHHHHhcccC
Confidence 99999999999 5565 9999999999999999999999
Q ss_pred CCCCCceEEEEeccchh
Q psy2371 565 RQGDPGSSRFYLSLDDS 581 (816)
Q Consensus 565 RqGdpG~s~~~lsleD~ 581 (816)
|+|++|.+.+|++.+|.
T Consensus 124 R~g~~g~~~~l~~~~~~ 140 (212)
T 3eaq_A 124 RAGRGGRVVLLYGPRER 140 (212)
T ss_dssp CCC--BEEEEEECGGGH
T ss_pred CCCCCCeEEEEEchhHH
Confidence 99999999999998874
No 61
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=1.5e-19 Score=214.31 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=124.1
Q ss_pred hhhHHhhhcchhcccccccchHHHHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEE
Q psy2371 359 FQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGT 438 (816)
Q Consensus 359 ~q~~f~~Y~~l~GmTGTa~te~~e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft 438 (816)
+..++..-.+...+|+|.....-.. .-.++..+.. |.... .|.+.......+...++.++.+..+.|.+|||||
T Consensus 373 ~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r-~~~l~-~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~ 446 (664)
T 1c4o_A 373 FEEFLERVSQVVFVSATPGPFELAH----SGRVVEQIIR-PTGLL-DPLVRVKPTENQILDLMEGIRERAARGERTLVTV 446 (664)
T ss_dssp HHHHHHTCSEEEEEESSCCHHHHHH----CSEEEEECSC-TTCCC-CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhhcCCEEEEecCCCHHHHHh----hhCeeeeeec-cCCCC-CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEE
Confidence 3444444455678999986543211 1122222211 10011 1112223334566677788877666788999999
Q ss_pred cccHhHHHHHHHHHhCCCCeEEEcCCchHHHHH--HHHHcCCCccEEEecCccccCccccCCCCchhhHHHhhhcchhhH
Q psy2371 439 TSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ--IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEV 516 (816)
Q Consensus 439 ~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~--ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~ 516 (816)
+|+..++.|+..|.+.|+++..+|+.....++. +-.+..+.-.|+||||+++||+||
T Consensus 447 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDi--------------------- 505 (664)
T 1c4o_A 447 LTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDI--------------------- 505 (664)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCC---------------------
T ss_pred CCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccC---------------------
Confidence 999999999999999999999999986544443 333433345799999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCceEEEEecC-----CCCcchhhhhcCccCCCCCCceEEEEeccchhhh
Q psy2371 517 KKKNKIKKLKNEWMLLHDKVISSGGLHIIGTER-----HESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~-----pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~ 583 (816)
|+|. +||+++. |.|.+.|.||+|||||.| +|.+.+|++..+.-+
T Consensus 506 -----------------p~v~-----lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 506 -----------------PEVS-----LVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp -----------------TTEE-----EEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHH
T ss_pred -----------------CCCC-----EEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHH
Confidence 5676 9999997 899999999999999996 899999998776544
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=197.05 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=135.3
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-------cCCcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-------SGQGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-------~g~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
.|+. |+|+|..+++.+..|+ |++|+||+|||++|++|++.... .|..++|++||++||.|.++.+..++.
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 6775 9999999999998888 99999999999999999996554 477899999999999999999999999
Q ss_pred hcCCeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceec
Q psy2371 147 WLGLSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIIS 224 (816)
Q Consensus 147 ~lglsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliis 224 (816)
.+++++++++|+.+.... ....+++|+||||+++ .++++.. .....+.+.++||||||.|+ |.+
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~-----~~~~~~~l~~lViDEah~l~-~~~------- 217 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-LDHMQNT-----PGFMYKNLQCLVIDEADRIL-DVG------- 217 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHC-----TTCCCTTCCEEEECSHHHHH-HTT-------
T ss_pred hcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHH-HHHHHcc-----CCcccccCCEEEEcChHHHh-hhh-------
Confidence 999999999999875433 3334699999999998 4555432 12345689999999999988 543
Q ss_pred cccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 225 GEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 225 g~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..++. ..+.+.||++....++++.
T Consensus 218 ---------~~~~l~~i~~~~~~-------------------------~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 218 ---------FEEELKQIIKLLPT-------------------------RRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp ---------CHHHHHHHHHHSCS-------------------------SSEEEEECSSCCHHHHHHH
T ss_pred ---------HHHHHHHHHHhCCC-------------------------CCeEEEEEecCCHHHHHHH
Confidence 33467777777764 3567889999888887765
No 63
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=197.12 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=131.2
Q ss_pred hcc-ccchhhhhhhccccCC--c--eeeecCCCCchHHHHHHHHHHHhc---CCcEEEEeCcHHHHHHHHHHHHHHhhhc
Q psy2371 77 LKM-RHFDVQLIGGIALHYG--N--ISEMQTGEGKTLVATLAAYLNSLS---GQGVHIVTISDYLAKRDAEWMSVLYNWL 148 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G--~--Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~VvT~n~yLA~Rd~e~~~~l~~~l 148 (816)
+|+ +|+++|..+++.++.| + |+.++||+|||++|++|++..... +..++|++||++||.|.++.+..+..++
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~ 189 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhC
Confidence 455 7999999999999887 5 999999999999999999966543 3369999999999999999999998876
Q ss_pred -CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 149 -GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 149 -glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
++++++.+++.+... .....++|++||||+| .+++.. .....+..+.++||||||.|+-+.+
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~IlV~TP~~l-~~~l~~-----~~~~~l~~l~~lVlDEad~l~~~~~---------- 252 (300)
T 3fmo_B 190 PELKLAYAVRGNKLER-GQKISEQIVIGTPGTV-LDWCSK-----LKFIDPKKIKVFVLDEADVMIATQG---------- 252 (300)
T ss_dssp TTCCEEEESTTCCCCT-TCCCCCSEEEECHHHH-HHHHTT-----TCCCCGGGCSEEEETTHHHHHHSTT----------
T ss_pred CCcEEEEEeCCccHhh-hhcCCCCEEEECHHHH-HHHHHh-----cCCCChhhceEEEEeCHHHHhhccC----------
Confidence 799999998865332 2246789999999998 555532 1234467899999999999982122
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..+...+++ ..+.++||++....++++.
T Consensus 253 ------~~~~~~~i~~~~~~-------------------------~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 253 ------HQDQSIRIQRMLPR-------------------------NCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp ------HHHHHHHHHTTSCT-------------------------TCEEEEEESCCCHHHHHHH
T ss_pred ------cHHHHHHHHHhCCC-------------------------CCEEEEEeccCCHHHHHHH
Confidence 44466667776654 3567888999888877764
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=186.31 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=125.9
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---------cCCcEEEEeCcHHHHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---------SGQGVHIVTISDYLAKRDAEWMSVL 144 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---------~g~~V~VvT~n~yLA~Rd~e~~~~l 144 (816)
.|+ .|+|+|..+++.+.+|+ |+.++||+|||++|++|++.... .|..++|++||++||.|.++++..+
T Consensus 38 ~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 466 89999999999998887 99999999999999999986543 4667999999999999999999887
Q ss_pred hhhcCCeEEEecCCCCHHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcce
Q psy2371 145 YNWLGLSIGVNSSEISHSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLI 222 (816)
Q Consensus 145 ~~~lglsv~~i~~~~~~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpli 222 (816)
. ..|+++.++.|+.+... +...-+++|+++||+++ .+++.. .....+.+.++||||||.++ +.+
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~------~~~~~~~~~~lViDEah~~~-~~~----- 183 (228)
T 3iuy_A 118 S-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-NDLQMN------NSVNLRSITYLVIDEADKML-DME----- 183 (228)
T ss_dssp C-CTTCCEEEECC------CHHHHHSCCSEEEECHHHH-HHHHHT------TCCCCTTCCEEEECCHHHHH-HTT-----
T ss_pred c-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHc------CCcCcccceEEEEECHHHHh-ccc-----
Confidence 5 56899999999876443 23334789999999998 444332 23346789999999999998 433
Q ss_pred eccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 223 ISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 223 isg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..++. ..+.+.||++-...+++++
T Consensus 184 -----------~~~~~~~i~~~~~~-------------------------~~~~l~~SAT~~~~~~~~~ 216 (228)
T 3iuy_A 184 -----------FEPQIRKILLDVRP-------------------------DRQTVMTSATWPDTVRQLA 216 (228)
T ss_dssp -----------CHHHHHHHHHHSCS-------------------------SCEEEEEESCCCHHHHHHH
T ss_pred -----------hHHHHHHHHHhCCc-------------------------CCeEEEEEeeCCHHHHHHH
Confidence 33366677776653 3567788999887777765
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=184.21 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=130.7
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-------cCCcEEEEeCcHHHHHHHHHHHHHHhh
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-------SGQGVHIVTISDYLAKRDAEWMSVLYN 146 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-------~g~~V~VvT~n~yLA~Rd~e~~~~l~~ 146 (816)
.|+ .|+|+|..+++.+.+|+ |+.++||+|||++|++|++...+ .|..++|++||++||.|.++.+..+..
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 454 79999999999998887 99999999999999999986543 367899999999999999999999999
Q ss_pred hcCCeEEEecCCCCHH-HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecc
Q psy2371 147 WLGLSIGVNSSEISHS-LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISG 225 (816)
Q Consensus 147 ~lglsv~~i~~~~~~~-~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg 225 (816)
..+++++++.|+.+.. +.....+++|+++||+++ .+++... .......+.++||||||.++ +.+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lViDEah~~~-~~~-------- 187 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRL-LQHMDET-----VSFHATDLQMLVLDEADRIL-DMG-------- 187 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHH-HHHHHHC-----SSCCCTTCCEEEETTHHHHH-HTT--------
T ss_pred CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHH-HHHHHhc-----CCcccccccEEEEeChHHHh-cCC--------
Confidence 9999999999987643 333345799999999998 4444332 12345688999999999988 543
Q ss_pred ccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 226 EIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 226 ~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..+++ ..+.+.||++....++++.
T Consensus 188 --------~~~~~~~i~~~~~~-------------------------~~~~l~~SAT~~~~~~~~~ 220 (236)
T 2pl3_A 188 --------FADTMNAVIENLPK-------------------------KRQTLLFSATQTKSVKDLA 220 (236)
T ss_dssp --------THHHHHHHHHTSCT-------------------------TSEEEEEESSCCHHHHHHH
T ss_pred --------cHHHHHHHHHhCCC-------------------------CCeEEEEEeeCCHHHHHHH
Confidence 33366677777754 3567889999877777654
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=187.00 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=133.9
Q ss_pred Hhcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcC---CcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 76 VLKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSG---QGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 76 ~lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
.+|+ .|+|+|..+++.+.+|+ |+.++||+|||++|++|++...+.+ ..++|++||++||.|.++.+..+...+|
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 3566 89999999999998887 9999999999999999998665543 3599999999999999999999999999
Q ss_pred CeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 150 LSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 150 lsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
++++++.|+.+.. .+....+++|+|+||+++ .+++... ....++.+.++||||||.++ +..
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~-----~~~~l~~~~~lViDEah~l~-~~~---------- 202 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL-IDHLENT-----KGFNLRALKYLVMDEADRIL-NMD---------- 202 (249)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHH-HHHHHHS-----TTCCCTTCCEEEECSHHHHH-HTT----------
T ss_pred eeEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC-----CCcCccccCEEEEcChhhhh-ccC----------
Confidence 9999999998743 333446899999999998 4554431 12346789999999999988 432
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..+++ ..+.+.||++....+++++
T Consensus 203 ------~~~~l~~i~~~~~~-------------------------~~~~l~~SAT~~~~v~~~~ 235 (249)
T 3ber_A 203 ------FETEVDKILKVIPR-------------------------DRKTFLFSATMTKKVQKLQ 235 (249)
T ss_dssp ------CHHHHHHHHHSSCS-------------------------SSEEEEEESSCCHHHHHHH
T ss_pred ------hHHHHHHHHHhCCC-------------------------CCeEEEEeccCCHHHHHHH
Confidence 33366677777653 3567788999887777764
No 67
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=186.04 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=130.6
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh----cCCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL----SGQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL----~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
.|+. |+|+|..+++.+.+|+ ++.++||+|||++|++|++.... .|..++|++||++||.|.++.+..++..+|
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4764 9999999999998887 99999999999999999996654 355799999999999999999999999999
Q ss_pred CeEEEecCCCCHHHH---HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccc
Q psy2371 150 LSIGVNSSEISHSLK---KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226 (816)
Q Consensus 150 lsv~~i~~~~~~~~r---~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~ 226 (816)
+++.++.++.....+ ....+++|+++||+++ .++++.. ........+.++||||||.++-+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~----~~~~~~~~~~~lViDEah~~~~~~~~-------- 193 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRL-IYLLKQD----PPGIDLASVEWLVVDESDKLFEDGKT-------- 193 (245)
T ss_dssp CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHH-HHHHHSS----SCSCCCTTCCEEEESSHHHHHHHC----------
T ss_pred ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHH-HHHHHhC----CCCcccccCcEEEEeChHHhcccccc--------
Confidence 999988776433222 1234689999999998 4444332 22345678999999999999833211
Q ss_pred cccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 227 IKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 227 ~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
.|...+..++..+.. .+.+.+.||++....+++++
T Consensus 194 ------~~~~~~~~i~~~~~~------------------------~~~~~~~~SAT~~~~v~~~~ 228 (245)
T 3dkp_A 194 ------GFRDQLASIFLACTS------------------------HKVRRAMFSATFAYDVEQWC 228 (245)
T ss_dssp ------CHHHHHHHHHHHCCC------------------------TTCEEEEEESSCCHHHHHHH
T ss_pred ------cHHHHHHHHHHhcCC------------------------CCcEEEEEeccCCHHHHHHH
Confidence 133356666655532 13567889999888888876
No 68
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.80 E-value=3.7e-19 Score=182.71 Aligned_cols=167 Identities=21% Similarity=0.162 Sum_probs=131.1
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---CCcEEEEeCcHHHHHHHHHHHHHHhhhc-C
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---GQGVHIVTISDYLAKRDAEWMSVLYNWL-G 149 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-g 149 (816)
.|+. |+|+|..+++.+.+|+ |+.++||+|||++|++|++...+. +..++|++||++||.|.++.+..+...+ +
T Consensus 42 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 6775 9999999999998887 999999999999999999865432 4579999999999999999999988766 9
Q ss_pred CeEEEecCCCCHHHHH-hhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccc
Q psy2371 150 LSIGVNSSEISHSLKK-KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIK 228 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~-~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~ 228 (816)
+++++..|+.+...+. ...+++|+++||+++ .+++.. .....+.++++||||||.++ +.+.
T Consensus 122 ~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~------~~~~~~~~~~lViDEah~~~-~~~~---------- 183 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTRLKKCHIAVGSPGRI-KQLIEL------DYLNPGSIRLFILDEADKLL-EEGS---------- 183 (230)
T ss_dssp CCEEEECTTSCHHHHHHHTTSCSEEEECHHHH-HHHHHT------TSSCGGGCCEEEESSHHHHH-STTS----------
T ss_pred ceEEEEeCCCCHHHHHHhccCCCEEEECHHHH-HHHHhc------CCcccccCCEEEeCCchHhh-cCcc----------
Confidence 9999999998854433 334789999999998 444432 22345788999999999998 4321
Q ss_pred cchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 229 NNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 229 ~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..++. ..+.+.||++....+++++
T Consensus 184 -----~~~~~~~i~~~~~~-------------------------~~~~l~lSAT~~~~~~~~~ 216 (230)
T 2oxc_A 184 -----FQEQINWIYSSLPA-------------------------SKQMLAVSATYPEFLANAL 216 (230)
T ss_dssp -----SHHHHHHHHHHSCS-------------------------SCEEEEEESCCCHHHHHHH
T ss_pred -----hHHHHHHHHHhCCC-------------------------CCeEEEEEeccCHHHHHHH
Confidence 33366677777753 2456788999777776665
No 69
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=3.5e-19 Score=176.16 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=110.4
Q ss_pred eEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchH--HHHHHHHHcCCCccEEEe
Q psy2371 408 KIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHK--LEAQIIAQAGHPKMITIA 485 (816)
Q Consensus 408 ~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~--rEa~ii~~Ag~~g~VtIA 485 (816)
++..+..+|..++.+.+... .+.++||||+|+..++.++..|...|+++..+||+... |+..+-.+......|+||
T Consensus 10 ~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLva 87 (172)
T 1t5i_A 10 YVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 87 (172)
T ss_dssp EEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 45566778999888877654 46789999999999999999999999999999998544 444455555556689999
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCC
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGR 565 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGR 565 (816)
|+++|||+|+ |.+. +||+++.|.|...|.||+|||||
T Consensus 88 T~~~~~Gldi--------------------------------------~~~~-----~Vi~~d~p~~~~~~~qr~GR~~R 124 (172)
T 1t5i_A 88 TNLFGRGMDI--------------------------------------ERVN-----IAFNYDMPEDSDTYLHRVARAGR 124 (172)
T ss_dssp SSCCSTTCCG--------------------------------------GGCS-----EEEESSCCSSHHHHHHHHHHHTG
T ss_pred CCchhcCcch--------------------------------------hhCC-----EEEEECCCCCHHHHHHHhccccc
Confidence 9999999999 5665 99999999999999999999999
Q ss_pred CCCCceEEEEeccchh
Q psy2371 566 QGDPGSSRFYLSLDDS 581 (816)
Q Consensus 566 qGdpG~s~~~lsleD~ 581 (816)
.|.+|.+.+|++.+++
T Consensus 125 ~g~~g~~~~~~~~~~~ 140 (172)
T 1t5i_A 125 FGTKGLAITFVSDEND 140 (172)
T ss_dssp GGCCCEEEEEECSHHH
T ss_pred CCCCcEEEEEEcChhH
Confidence 9999999999987654
No 70
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=6.8e-19 Score=172.09 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=109.5
Q ss_pred eEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHH--HHHHHHcCCCccEEEe
Q psy2371 408 KIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLE--AQIIAQAGHPKMITIA 485 (816)
Q Consensus 408 ~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rE--a~ii~~Ag~~g~VtIA 485 (816)
++.....+|+.++.+.+... .+.++||||+|+..++.++..|...|+++..+||+....+ ..+-.+......|+||
T Consensus 14 ~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~ 91 (163)
T 2hjv_A 14 VIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVA 91 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 45566788999888877653 5678999999999999999999999999999999865444 4444444445689999
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCC
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGR 565 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGR 565 (816)
|+++|||+|+ |.+. +||+++.|.|...|.||+||+||
T Consensus 92 T~~~~~Gld~--------------------------------------~~~~-----~Vi~~~~p~~~~~~~qr~GR~~R 128 (163)
T 2hjv_A 92 TDVAARGIDI--------------------------------------ENIS-----LVINYDLPLEKESYVHRTGRTGR 128 (163)
T ss_dssp CGGGTTTCCC--------------------------------------SCCS-----EEEESSCCSSHHHHHHHTTTSSC
T ss_pred CChhhcCCch--------------------------------------hcCC-----EEEEeCCCCCHHHHHHhccccCc
Confidence 9999999999 4555 99999999999999999999999
Q ss_pred CCCCceEEEEeccchh
Q psy2371 566 QGDPGSSRFYLSLDDS 581 (816)
Q Consensus 566 qGdpG~s~~~lsleD~ 581 (816)
.|.+|.+..|++.+|.
T Consensus 129 ~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 129 AGNKGKAISFVTAFEK 144 (163)
T ss_dssp TTCCEEEEEEECGGGH
T ss_pred CCCCceEEEEecHHHH
Confidence 9999999999987763
No 71
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.79 E-value=2.8e-19 Score=184.70 Aligned_cols=166 Identities=18% Similarity=0.179 Sum_probs=126.2
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
+|+. |+|+|..+++.+.+|+ |+.++||+|||++|++|++.... .+..++|++||++||.|.++.+..+...+++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 5775 9999999999998887 99999999999999999996543 3568999999999999999999999999999
Q ss_pred eEEEecCCCCHHHHH--hh-cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 151 SIGVNSSEISHSLKK--KS-YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 151 sv~~i~~~~~~~~r~--~~-y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
++....|+.+..... .. ..++|+++||+++ ++++... ......+.++||||||.++ +.+
T Consensus 128 ~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~~~-~~~---------- 189 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRV-FDMLNRR------YLSPKWIKMFVLDEADEML-SRG---------- 189 (237)
T ss_dssp CEEEECC-------------CCCSEEEECHHHH-HHHHHTT------SSCSTTCCEEEEESHHHHH-HTT----------
T ss_pred eEEEEECCCchHHHHHHHhcCCCCEEEECHHHH-HHHHHhC------CcCcccCcEEEECCchHhh-ccC----------
Confidence 999999987643222 22 2389999999998 5555432 2335678999999999998 432
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..++. ..+.+.||++....+++++
T Consensus 190 ------~~~~l~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 190 ------FKDQIYEIFQKLNT-------------------------SIQVVLLSATMPTDVLEVT 222 (237)
T ss_dssp ------CHHHHHHHHHHSCT-------------------------TCEEEEECSSCCHHHHHHH
T ss_pred ------cHHHHHHHHHhCCC-------------------------CCeEEEEEEecCHHHHHHH
Confidence 23356666666653 3566789999887777765
No 72
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.79 E-value=2.9e-19 Score=181.77 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=129.9
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhc--
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWL-- 148 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-- 148 (816)
.|+ .|+|+|..+++.+.+|+ ++.++||+|||++|++|++.... .+..++|++||++||.|.++.+..+...+
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 554 69999999999998887 99999999999999999996544 25679999999999999999999999887
Q ss_pred --CCeEEEecCCCCHHHHHhh--cCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceec
Q psy2371 149 --GLSIGVNSSEISHSLKKKS--YEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIIS 224 (816)
Q Consensus 149 --glsv~~i~~~~~~~~r~~~--y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliis 224 (816)
+++++++.|+.+....... .+++|+++||+++ .+++.. .......++++||||||.++ +.+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~------~~~~~~~~~~lViDEah~~~-~~~------- 166 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRI-NDFIRE------QALDVHTAHILVVDEADLML-DMG------- 166 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHH-HHHHHT------TCCCGGGCCEEEECSHHHHH-HTT-------
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHH-HHHHHc------CCCCcCcceEEEEcCchHHh-hhC-------
Confidence 8999999998765443332 3689999999998 444433 22345789999999999988 432
Q ss_pred cccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 225 GEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 225 g~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..+++ ..+.+.||++....+++++
T Consensus 167 ---------~~~~l~~i~~~~~~-------------------------~~~~l~~SAT~~~~~~~~~ 199 (219)
T 1q0u_A 167 ---------FITDVDQIAARMPK-------------------------DLQMLVFSATIPEKLKPFL 199 (219)
T ss_dssp ---------CHHHHHHHHHTSCT-------------------------TCEEEEEESCCCGGGHHHH
T ss_pred ---------hHHHHHHHHHhCCc-------------------------ccEEEEEecCCCHHHHHHH
Confidence 22366777777753 2466788998777666665
No 73
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=171.74 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=102.7
Q ss_pred EecC-hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHH--HHHHHcCCCccEEEe
Q psy2371 409 IYKT-MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEA--QIIAQAGHPKMITIA 485 (816)
Q Consensus 409 v~~t-~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIA 485 (816)
+... ..+|..++.+.+... .+.++||||+|+..++.++..|...|+++..+||.....++ .+-.+......|+||
T Consensus 13 ~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLva 90 (175)
T 2rb4_A 13 VLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLIT 90 (175)
T ss_dssp EECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 3344 345999888876543 45689999999999999999999999999999999654444 444454445689999
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCC------CCcchhhhh
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERH------ESRRIDNQL 559 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~p------es~rid~Q~ 559 (816)
|+++|||+|+ |.+. +||+++.| .+...|.||
T Consensus 91 T~~~~~Gid~--------------------------------------~~~~-----~Vi~~d~p~~~~~~~~~~~~~qr 127 (175)
T 2rb4_A 91 TNVCARGIDV--------------------------------------KQVT-----IVVNFDLPVKQGEEPDYETYLHR 127 (175)
T ss_dssp CCSCCTTTCC--------------------------------------TTEE-----EEEESSCCC--CCSCCHHHHHHH
T ss_pred ecchhcCCCc--------------------------------------ccCC-----EEEEeCCCCCccccCCHHHHHHH
Confidence 9999999999 5565 99999999 999999999
Q ss_pred cCccCCCCCCceEEEEeccch
Q psy2371 560 RGRSGRQGDPGSSRFYLSLDD 580 (816)
Q Consensus 560 ~GRtGRqGdpG~s~~~lsleD 580 (816)
+|||||.|.+|.+..|++.+|
T Consensus 128 ~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 128 IGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp HCBC----CCEEEEEEECGGG
T ss_pred hcccccCCCCceEEEEEccch
Confidence 999999999999999998776
No 74
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.78 E-value=1.4e-18 Score=180.47 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=130.6
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc------------CCcEEEEeCcHHHHHHHHHHH
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS------------GQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~------------g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
.|+ .|+|+|..+++.+++|+ ++.++||+|||++|++|++..... +..++|++||++||.|.++.+
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 455 69999999999998887 999999999999999999976543 347999999999999999999
Q ss_pred HHHhhhcCCeEEEecCCCCHHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 142 SVLYNWLGLSIGVNSSEISHSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 142 ~~l~~~lglsv~~i~~~~~~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
..+....+++++++.|+.+... +....+++|+++||++| .+++... ......+.++|+||||.++ +.+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~~~-~~~-- 190 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRL-VDFIEKN------KISLEFCKYIVLDEADRML-DMG-- 190 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHH-HHHHHTT------SBCCTTCCEEEEETHHHHH-HTT--
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHH-HHHHHcC------CCChhhCCEEEEeCHHHHH-hCc--
Confidence 9999999999999999887433 33345789999999998 4544332 2345788999999999998 443
Q ss_pred cceeccccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 220 pliisg~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..+... . ....+.+.||++....++++.
T Consensus 191 --------------~~~~~~~i~~~~~~~-----------------~----~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 191 --------------FEPQIRKIIEESNMP-----------------S----GINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp --------------CHHHHHHHHHSSCCC-----------------C----GGGCEEEEEESSCCHHHHHHH
T ss_pred --------------hHHHHHHHHhhccCC-----------------C----CCCcEEEEEEEeCCHHHHHHH
Confidence 333666666643210 0 002467788999887777764
No 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.2e-18 Score=174.54 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=130.7
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---CCcEEEEeCcHHHHHHHHHHHHHHhhhc-C
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---GQGVHIVTISDYLAKRDAEWMSVLYNWL-G 149 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-g 149 (816)
.|+ .|+|+|..+++.+.+|+ ++.++||+|||++|++|++..... +..++|++||++||.|.++++..+...+ +
T Consensus 21 ~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 565 79999999999998887 999999999999999999965332 4569999999999999999999999888 8
Q ss_pred CeEEEecCCCCHHHH--HhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccc
Q psy2371 150 LSIGVNSSEISHSLK--KKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI 227 (816)
Q Consensus 150 lsv~~i~~~~~~~~r--~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~ 227 (816)
+++++..|+.+.... .....++|+++||+++ .+++... ....+.+.++|+||||.++ +..
T Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~lViDEah~~~-~~~---------- 162 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI-LDLIKKG------VAKVDHVQMIVLDEADKLL-SQD---------- 162 (206)
T ss_dssp CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCTTCCEEEEETHHHHT-STT----------
T ss_pred ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHH-HHHHHcC------CcCcccCCEEEEEChHHhH-hhC----------
Confidence 999999999875433 2334789999999997 4444322 2345689999999999988 432
Q ss_pred ccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 228 KNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 228 ~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..+...+++ ..+.+.||++-...+++++
T Consensus 163 ------~~~~l~~i~~~~~~-------------------------~~~~l~~SAT~~~~~~~~~ 195 (206)
T 1vec_A 163 ------FVQIMEDIILTLPK-------------------------NRQILLYSATFPLSVQKFM 195 (206)
T ss_dssp ------THHHHHHHHHHSCT-------------------------TCEEEEEESCCCHHHHHHH
T ss_pred ------cHHHHHHHHHhCCc-------------------------cceEEEEEeeCCHHHHHHH
Confidence 33366677776653 2567788999877777765
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=8.4e-18 Score=198.65 Aligned_cols=118 Identities=11% Similarity=0.122 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhhc-cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHHHHHHHHcCCCc---cEEEecC
Q psy2371 414 EEKYQAILMDIKNCY-IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIAQAGHPK---MITIATN 487 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~-~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~Ag~~g---~VtIATn 487 (816)
..|+..+...+.... ..+.++||||++....+.|...|...|+++..+||... +|++.+-.+..... .++|||+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 456654444333222 25789999999999999999999999999999999854 45544444433222 3899999
Q ss_pred ccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCC
Q psy2371 488 MAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQG 567 (816)
Q Consensus 488 mAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqG 567 (816)
.+|+|+|+. .+. +||++|.|-|+..|.|++||++|.|
T Consensus 478 a~g~Glnl~--------------------------------------~a~-----~Vi~~d~~wnp~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 478 AGGCGLNLI--------------------------------------GAN-----RLVMFDPDWNPANDEQAMARVWRDG 514 (644)
T ss_dssp GSCTTCCCT--------------------------------------TEE-----EEEECSCCSSHHHHHHHHTTSSSTT
T ss_pred cccCCcccc--------------------------------------cCC-----EEEEECCCCCccHHHHHHHhhhhcC
Confidence 999999993 444 9999999999999999999999999
Q ss_pred CCceEEE
Q psy2371 568 DPGSSRF 574 (816)
Q Consensus 568 dpG~s~~ 574 (816)
.......
T Consensus 515 q~~~v~v 521 (644)
T 1z3i_X 515 QKKTCYI 521 (644)
T ss_dssp CCSCEEE
T ss_pred CCCceEE
Confidence 8876443
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.6e-18 Score=206.45 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCC---c--cEEEecCc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHP---K--MITIATNM 488 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~---g--~VtIATnm 488 (816)
..|+..+.+.+.+..+.|.+|||||..+...+.|...|...|+++..++|.....++.-+-.+++. + .++++|..
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 468888888888877889999999999999999999999999999999999655444433344432 3 48999999
Q ss_pred cccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCC
Q psy2371 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGD 568 (816)
Q Consensus 489 AGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGd 568 (816)
+|.|+|+. .+. +||.++.|-|+..+.|+.||+.|.|.
T Consensus 635 gg~GlNL~--------------------------------------~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ 671 (800)
T 3mwy_W 635 GGLGINLM--------------------------------------TAD-----TVVIFDSDWNPQADLQAMARAHRIGQ 671 (800)
T ss_dssp HTTTCCCT--------------------------------------TCC-----EEEESSCCSCSHHHHHHHTTTSCSSC
T ss_pred ccCCCCcc--------------------------------------ccc-----eEEEecCCCChhhHHHHHHHHHhcCC
Confidence 99999994 343 99999999999999999999999998
Q ss_pred CceEEE
Q psy2371 569 PGSSRF 574 (816)
Q Consensus 569 pG~s~~ 574 (816)
......
T Consensus 672 ~k~V~V 677 (800)
T 3mwy_W 672 KNHVMV 677 (800)
T ss_dssp CSCEEE
T ss_pred CceEEE
Confidence 776544
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.77 E-value=9e-19 Score=176.60 Aligned_cols=128 Identities=19% Similarity=0.251 Sum_probs=106.1
Q ss_pred CeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHHHHHHHHcCCCccEEE
Q psy2371 407 DKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIAQAGHPKMITI 484 (816)
Q Consensus 407 d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~Ag~~g~VtI 484 (816)
.+++....+|...+++.+.+ .+.++||||+|+..++.++..|+..|+++..+||+.. +|+..+-.+......|+|
T Consensus 33 ~~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 109 (191)
T 2p6n_A 33 EVEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLV 109 (191)
T ss_dssp EEEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEE
T ss_pred EEEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 35567778899988887754 3468999999999999999999999999999999854 455555555444568999
Q ss_pred ecCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccC
Q psy2371 485 ATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSG 564 (816)
Q Consensus 485 ATnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtG 564 (816)
||+++|||+|| |.|. +||+++.|.|...|.||+||||
T Consensus 110 aT~~~~~Gldi--------------------------------------~~v~-----~VI~~d~p~~~~~~~qr~GR~g 146 (191)
T 2p6n_A 110 ATDVASKGLDF--------------------------------------PAIQ-----HVINYDMPEEIENYVHRIGRTG 146 (191)
T ss_dssp ECHHHHTTCCC--------------------------------------CCCS-----EEEESSCCSSHHHHHHHHTTSC
T ss_pred EcCchhcCCCc--------------------------------------ccCC-----EEEEeCCCCCHHHHHHHhCccc
Confidence 99999999999 4555 9999999999999999999999
Q ss_pred CCCCCceEEEEeccch
Q psy2371 565 RQGDPGSSRFYLSLDD 580 (816)
Q Consensus 565 RqGdpG~s~~~lsleD 580 (816)
|.|.+|.+..|++..+
T Consensus 147 R~g~~g~~i~l~~~~~ 162 (191)
T 2p6n_A 147 CSGNTGIATTFINKAC 162 (191)
T ss_dssp C---CCEEEEEECTTS
T ss_pred cCCCCcEEEEEEcCch
Confidence 9999999999998763
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.77 E-value=1.6e-18 Score=176.10 Aligned_cols=166 Identities=21% Similarity=0.228 Sum_probs=125.2
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh---cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCC
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL---SGQGVHIVTISDYLAKRDAEWMSVLYNWLGL 150 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL---~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgl 150 (816)
.|+ .|+|.|..++..+.+|+ ++.++||+|||++|++|++.... .+..++|++||++||.|.++.+..+....++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 465 79999999999998887 99999999999999999996543 3457999999999999999999999999999
Q ss_pred eEEEecCCCCHHHHHh-hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecccccc
Q psy2371 151 SIGVNSSEISHSLKKK-SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKN 229 (816)
Q Consensus 151 sv~~i~~~~~~~~r~~-~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~ 229 (816)
+++...|+.+...+.. ...++|+++||+.+ ++++... ......+.++|+||||.++ +..
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~~~~~iViDEah~~~-~~~------------ 171 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQRR------RFRTDKIKMFILDEADEML-SSG------------ 171 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHH-HHHHHTT------SSCCTTCCEEEEETHHHHH-HTT------------
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHH-HHHHHhC------CcchhhCcEEEEcChhHHh-hhh------------
Confidence 9999999876443322 23589999999998 4444332 2345679999999999987 432
Q ss_pred chhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 230 NAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 230 ~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..+...++. ..+.+.||++....+++++
T Consensus 172 ----~~~~l~~i~~~~~~-------------------------~~~~i~lSAT~~~~~~~~~ 204 (224)
T 1qde_A 172 ----FKEQIYQIFTLLPP-------------------------TTQVVLLSATMPNDVLEVT 204 (224)
T ss_dssp ----CHHHHHHHHHHSCT-------------------------TCEEEEEESSCCHHHHHHH
T ss_pred ----hHHHHHHHHHhCCc-------------------------cCeEEEEEeecCHHHHHHH
Confidence 23256666666653 3567788999877777665
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.77 E-value=1.9e-17 Score=196.17 Aligned_cols=126 Identities=22% Similarity=0.210 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHH--HHHHHcCCCccEEEecCcccc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGR 491 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa--~ii~~Ag~~g~VtIATnmAGR 491 (816)
..+...++..+.+....|.+|||||+|+..++.|++.|.+.|+++..+|++..+.++ .+-.+..+...|+||||+++|
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~ 507 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCST
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhC
Confidence 445667778887776678899999999999999999999999999999998554444 333343334579999999999
Q ss_pred CccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecC-----CCCcchhhhhcCccCCC
Q psy2371 492 GTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTER-----HESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 492 GtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~-----pes~rid~Q~~GRtGRq 566 (816)
|+|| |+|. +||+++. |.|.+.|.||+|||||.
T Consensus 508 GlDi--------------------------------------p~v~-----lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 508 GLDI--------------------------------------PEVS-----LVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp TCCC--------------------------------------TTEE-----EEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred Cccc--------------------------------------CCCC-----EEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 9999 5676 9999998 99999999999999998
Q ss_pred CCCceEEEEeccchhhh
Q psy2371 567 GDPGSSRFYLSLDDSLL 583 (816)
Q Consensus 567 GdpG~s~~~lsleD~l~ 583 (816)
.+|.+.+|++..+.-+
T Consensus 545 -~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 545 -AEGRVIMYADKITKSM 560 (661)
T ss_dssp -TTCEEEEECSSCCHHH
T ss_pred -CCCEEEEEEeCCCHHH
Confidence 7999999998876544
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.77 E-value=4.2e-18 Score=166.62 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=100.8
Q ss_pred ecChHH-HHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHH--HHHHHHcCCCccEEEec
Q psy2371 410 YKTMEE-KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLE--AQIIAQAGHPKMITIAT 486 (816)
Q Consensus 410 ~~t~~~-K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rE--a~ii~~Ag~~g~VtIAT 486 (816)
..+..+ |..++.+.+... .+.++||||+|++.++.++..|...|+++..+||.....+ ..+-.+......|+|||
T Consensus 10 ~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 10 NVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp EEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred ECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 334445 888888876653 4568999999999999999999999999999999955444 44444444456899999
Q ss_pred CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC
Q psy2371 487 NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 487 nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq 566 (816)
++++||+|+ |.+. +||+++.|.|...|.||+||+||.
T Consensus 88 ~~~~~G~d~--------------------------------------~~~~-----~Vi~~~~p~~~~~~~qr~GR~gR~ 124 (165)
T 1fuk_A 88 DLLARGIDV--------------------------------------QQVS-----LVINYDLPANKENYIHRIGRGGRF 124 (165)
T ss_dssp GGGTTTCCC--------------------------------------CSCS-----EEEESSCCSSGGGGGGSSCSCC--
T ss_pred ChhhcCCCc--------------------------------------ccCC-----EEEEeCCCCCHHHHHHHhcccccC
Confidence 999999999 4555 999999999999999999999999
Q ss_pred CCCceEEEEeccch
Q psy2371 567 GDPGSSRFYLSLDD 580 (816)
Q Consensus 567 GdpG~s~~~lsleD 580 (816)
|.+|.+..|++.+|
T Consensus 125 g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 125 GRKGVAINFVTNED 138 (165)
T ss_dssp ---CEEEEEEETTT
T ss_pred CCCceEEEEEcchH
Confidence 99999999998776
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=2.7e-18 Score=174.22 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=127.9
Q ss_pred hccc-cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc---CCcEEEEeCcHHHHHHHHHHHHHHhhhc-C
Q psy2371 77 LKMR-HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS---GQGVHIVTISDYLAKRDAEWMSVLYNWL-G 149 (816)
Q Consensus 77 lg~~-p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~---g~~V~VvT~n~yLA~Rd~e~~~~l~~~l-g 149 (816)
.|+. |+|.|..+++.+.+|+ ++.++||+|||++|++|++..... +..++|++||++||.|.++.+..+...+ +
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 6775 9999999999988887 999999999999999999965433 3479999999999999999999998887 8
Q ss_pred CeEEEecCCCCHHHHHh---hcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccc
Q psy2371 150 LSIGVNSSEISHSLKKK---SYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~---~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~ 226 (816)
++++++.|+.+...... ...++|+++||+.+ .++++. .....+.+.++|+||||.++-+..
T Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~lViDEah~~~~~~~--------- 175 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN------KSLNLKHIKHFILDECDKMLEQLD--------- 175 (220)
T ss_dssp CCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT------TSSCCTTCCEEEEESHHHHHSSHH---------
T ss_pred ceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHH-HHHHHh------CCCCcccCCEEEEcCHHHHhcccC---------
Confidence 99999999987543332 23579999999997 344432 223467899999999999983221
Q ss_pred cccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 227 IKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 227 ~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..+...++. ..+.+.||++....+++++
T Consensus 176 -------~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~ 208 (220)
T 1t6n_A 176 -------MRRDVQEIFRMTPH-------------------------EKQVMMFSATLSKEIRPVC 208 (220)
T ss_dssp -------HHHHHHHHHHTSCS-------------------------SSEEEEEESCCCTTTHHHH
T ss_pred -------cHHHHHHHHHhCCC-------------------------cCeEEEEEeecCHHHHHHH
Confidence 33356666665543 3566788988766665543
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=172.77 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=100.4
Q ss_pred eEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch--HHHHHHHHHcCCCccEEEe
Q psy2371 408 KIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIAQAGHPKMITIA 485 (816)
Q Consensus 408 ~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~--~rEa~ii~~Ag~~g~VtIA 485 (816)
+++....+|..++.+.+... ..+.++||||+|+..++.++..|...|+++..+||+.. +|+..+-.+......|+||
T Consensus 24 ~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 24 VVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp EEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred EEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 45566778999888877653 35678999999999999999999999999999999854 4444454554445689999
Q ss_pred cCccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCC
Q psy2371 486 TNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGR 565 (816)
Q Consensus 486 TnmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGR 565 (816)
|+++|||+|+ |.+. +||+++.|.|...|.||+|||||
T Consensus 103 T~~~~~Gldi--------------------------------------~~~~-----~VI~~d~p~s~~~~~Qr~GR~~R 139 (185)
T 2jgn_A 103 TAVAARGLDI--------------------------------------SNVK-----HVINFDLPSDIEEYVHRIGRTGR 139 (185)
T ss_dssp EC------CC--------------------------------------CSBS-----EEEESSCCSSHHHHHHHHTTBCC
T ss_pred cChhhcCCCc--------------------------------------ccCC-----EEEEeCCCCCHHHHHHHccccCC
Confidence 9999999999 4555 99999999999999999999999
Q ss_pred CCCCceEEEEeccchh
Q psy2371 566 QGDPGSSRFYLSLDDS 581 (816)
Q Consensus 566 qGdpG~s~~~lsleD~ 581 (816)
.|.+|.+.+|++..|.
T Consensus 140 ~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 140 VGNLGLATSFFNERNI 155 (185)
T ss_dssp TTSCEEEEEEECGGGG
T ss_pred CCCCcEEEEEEchhhH
Confidence 9999999999987763
No 84
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.75 E-value=1.4e-17 Score=166.62 Aligned_cols=164 Identities=18% Similarity=0.148 Sum_probs=126.0
Q ss_pred hcc-ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh------cCCcEEEEeCcHHHHHHHHHHHHHHhhh
Q psy2371 77 LKM-RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL------SGQGVHIVTISDYLAKRDAEWMSVLYNW 147 (816)
Q Consensus 77 lg~-~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL------~g~~V~VvT~n~yLA~Rd~e~~~~l~~~ 147 (816)
.|+ .|+|+|..+++.+.+|+ ++.++||+|||++|++|++.... .+..++|++||++|+.|.++.+..+...
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 565 89999999999998887 99999999999999999996543 3567999999999999999988877654
Q ss_pred cCCeEEEecCCCCHHH--HHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceecc
Q psy2371 148 LGLSIGVNSSEISHSL--KKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISG 225 (816)
Q Consensus 148 lglsv~~i~~~~~~~~--r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg 225 (816)
+++..+.|+.+... +....+++|+++||+++ .+++... ....+.++++|+||||.++ +..
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDEah~~~-~~~-------- 160 (207)
T 2gxq_A 99 --LKVVAVYGGTGYGKQKEALLRGADAVVATPGRA-LDYLRQG------VLDLSRVEVAVLDEADEML-SMG-------- 160 (207)
T ss_dssp --SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SSCCTTCSEEEEESHHHHH-HTT--------
T ss_pred --ceEEEEECCCChHHHHHHhhCCCCEEEECHHHH-HHHHHcC------CcchhhceEEEEEChhHhh-ccc--------
Confidence 78888888876432 23334799999999997 4444432 2345789999999999988 432
Q ss_pred ccccchhhhHHHHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHH
Q psy2371 226 EIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL 291 (816)
Q Consensus 226 ~~~~~~~~y~~~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l 291 (816)
|...+..++..++. ..+.+.+|++....++++.
T Consensus 161 --------~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 161 --------FEEEVEALLSATPP-------------------------SRQTLLFSATLPSWAKRLA 193 (207)
T ss_dssp --------CHHHHHHHHHTSCT-------------------------TSEEEEECSSCCHHHHHHH
T ss_pred --------hHHHHHHHHHhCCc-------------------------cCeEEEEEEecCHHHHHHH
Confidence 33366666666653 3567888999877777654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.52 E-value=1.7e-18 Score=170.42 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCC--CccEEEecCcccc
Q psy2371 414 EEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGH--PKMITIATNMAGR 491 (816)
Q Consensus 414 ~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~--~g~VtIATnmAGR 491 (816)
.+|..++.+.+... .+.++||||+|+..++.++..|+..|+++..+||+....++.-+..+++ ...|+|||+++||
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 66887777766542 4568999999999999999999999999999999855444433333333 4479999999999
Q ss_pred CccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCce
Q psy2371 492 GTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGS 571 (816)
Q Consensus 492 GtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~ 571 (816)
|+|+ |.+. +||+++.|.|...|.||+|||||.|++|.
T Consensus 93 Gid~--------------------------------------~~~~-----~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~ 129 (170)
T 2yjt_D 93 GIDI--------------------------------------PDVS-----HVFNFDMPRSGDTYLHRIGRTARAGRKGT 129 (170)
Confidence 9999 5565 99999999999999999999999999999
Q ss_pred EEEEeccchh
Q psy2371 572 SRFYLSLDDS 581 (816)
Q Consensus 572 s~~~lsleD~ 581 (816)
+.+|++..|.
T Consensus 130 ~~~~~~~~~~ 139 (170)
T 2yjt_D 130 AISLVEAHDH 139 (170)
Confidence 9999987763
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.66 E-value=3.5e-15 Score=172.84 Aligned_cols=134 Identities=21% Similarity=0.209 Sum_probs=87.6
Q ss_pred Hhccccchhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 76 VLKMRHFDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
..|+.|+|.|...+. .+.+|+ +++|+||+|||++|++|++. .+..|.|+|||.+|+.|..+.+.. ++
T Consensus 3 ~~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~----l~ 75 (540)
T 2vl7_A 3 VLKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKL----LG 75 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGG----GT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHh----cC
Confidence 567899999998753 345666 99999999999999999974 378899999999999998876654 57
Q ss_pred CeEEEecCCCC----------H---------------------------------------HHHHhhcCCCEEEECCCcc
Q psy2371 150 LSIGVNSSEIS----------H---------------------------------------SLKKKSYEADITYGTNNEF 180 (816)
Q Consensus 150 lsv~~i~~~~~----------~---------------------------------------~~r~~~y~~dI~ygT~~~l 180 (816)
+++.++.|... + ..|..+..+||+++|++-|
T Consensus 76 ~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l 155 (540)
T 2vl7_A 76 LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYL 155 (540)
T ss_dssp CCEEEC---------------------------------------------------------CTTGGGCSEEEEETHHH
T ss_pred CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHh
Confidence 77776654211 0 0133345789999999887
Q ss_pred hhhhhhhhhccCCCccccccceEEEecchhhhhhhccC
Q psy2371 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218 (816)
Q Consensus 181 ~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~ 218 (816)
--+..+..+......-...+..++|+||||.+ .+ ++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl-~~-a~ 191 (540)
T 2vl7_A 156 FQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL-LE-AD 191 (540)
T ss_dssp HSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG-GG-GG
T ss_pred cCHHHHHhhCcccccccCcCCCEEEEEccccH-HH-HH
Confidence 22233333210000012357889999999999 34 54
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=152.12 Aligned_cols=136 Identities=15% Similarity=0.026 Sum_probs=95.7
Q ss_pred HhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc------CCcEEEEeCcHHHHHH-HHHHHHHHhh
Q psy2371 76 VLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS------GQGVHIVTISDYLAKR-DAEWMSVLYN 146 (816)
Q Consensus 76 ~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~------g~~V~VvT~n~yLA~R-d~e~~~~l~~ 146 (816)
..++.|+|.|..++..+.+|+ ++.++||+|||+++.+|+...... +..++|++|+++|+.| ..+++..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 346789999999999887776 999999999999999998854332 5689999999999999 6777777765
Q ss_pred hcCCeEEEecCCCCHH--HHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 147 WLGLSIGVNSSEISHS--LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 147 ~lglsv~~i~~~~~~~--~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
. +++++...|+.+.. .+.....++|+++||+.| .+++...............+.++||||||.++
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-ENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHH-HHHHHC-------CCCGGGCSEEEETTC----
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHH-HHHHhccCcccccccchhcccEEEEECchhhc
Confidence 5 88999988876422 122223689999999997 34443321100111345688999999999987
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.48 E-value=5e-14 Score=148.97 Aligned_cols=124 Identities=15% Similarity=0.043 Sum_probs=97.8
Q ss_pred cccchhhhhhhccccCC-c-eeeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 79 MRHFDVQLIGGIALHYG-N-ISEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G-~-Iaem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
+.|+|.|..++..++++ + |..++||+|||+++++++......|. .++|++||++|+.|..+.+..+....++.++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 58999999999866544 3 88999999999999988876544555 799999999999999999988877677888888
Q ss_pred cCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 156 SSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 156 ~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
.++.+... .....++|+++||+.+ ..+. ....+.+.++||||||.+.
T Consensus 192 ~~~~~~~~-~~~~~~~I~v~T~~~l-----~~~~-----~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 192 GGGASKDD-KYKNDAPVVVGTWQTV-----VKQP-----KEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp STTCSSTT-CCCTTCSEEEECHHHH-----TTSC-----GGGGGGEEEEEEETGGGCC
T ss_pred eCCCcchh-hhccCCcEEEEchHHH-----HhhH-----HHHHhhCCEEEEECCccCC
Confidence 88865332 2224689999999876 2221 2234688999999999987
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.41 E-value=2.8e-13 Score=143.93 Aligned_cols=120 Identities=15% Similarity=0.185 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhC-CCCeEEEcCCch--HHHHHHHHHcCC-Ccc-EEEec
Q psy2371 412 TMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKN-NLPHSVLNAKQH--KLEAQIIAQAGH-PKM-ITIAT 486 (816)
Q Consensus 412 t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~-gi~~~vLnak~~--~rEa~ii~~Ag~-~g~-VtIAT 486 (816)
....|+.++.+.+.+..+.|.+|||||++...++.|+..|.+. |+++..++|... +|++.+-.+... ... +++||
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567999998888877677889999999999999999999985 999999999854 555555555322 344 79999
Q ss_pred CccccCccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCC
Q psy2371 487 NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQ 566 (816)
Q Consensus 487 nmAGRGtDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRq 566 (816)
+.+|+|+|+. .+. +||++|.|-++..|.|++||++|.
T Consensus 173 ~~~g~Glnl~--------------------------------------~a~-----~VI~~d~~wnp~~~~Q~~gR~~R~ 209 (271)
T 1z5z_A 173 KAGGFGINLT--------------------------------------SAN-----RVIHFDRWWNPAVEDQATDRVYRI 209 (271)
T ss_dssp CTTCCCCCCT--------------------------------------TCS-----EEEECSCCSCTTTC----------
T ss_pred hhhcCCcCcc--------------------------------------cCC-----EEEEECCCCChhHHHHHHHhcccc
Confidence 9999999994 343 999999999999999999999999
Q ss_pred CCCceEEE
Q psy2371 567 GDPGSSRF 574 (816)
Q Consensus 567 GdpG~s~~ 574 (816)
|..+.+..
T Consensus 210 Gq~~~v~v 217 (271)
T 1z5z_A 210 GQTRNVIV 217 (271)
T ss_dssp ----CCEE
T ss_pred CCCCceEE
Confidence 99997643
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=137.43 Aligned_cols=126 Identities=19% Similarity=0.055 Sum_probs=93.2
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CC----cEEEEeCcHHHHHHHHHHHHHHhh-hcC
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQ----GVHIVTISDYLAKRDAEWMSVLYN-WLG 149 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~----~V~VvT~n~yLA~Rd~e~~~~l~~-~lg 149 (816)
.+..+++|..+++.+.+|+ ++.++||+|||.++.+|++...+. +. ++.++.|+++||.+.++.+...+. .+|
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 4567899999999999988 899999999999999998865543 33 789999999999999887765443 456
Q ss_pred CeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhc
Q psy2371 150 LSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDE 216 (816)
Q Consensus 150 lsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDe 216 (816)
..++...... .+...-.++|+|||||++ .+.+.. .++.++++||||||.+..|.
T Consensus 139 ~~~g~~~~~~---~~~~~~~~~Ivv~Tpg~l-~~~l~~---------~l~~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 139 KSCGYSVRFE---SILPRPHASIMFCTVGVL-LRKLEA---------GIRGISHVIVDEIHERDINT 192 (235)
T ss_dssp SSEEEEETTE---EECCCSSSEEEEEEHHHH-HHHHHH---------CCTTCCEEEECCTTSCCHHH
T ss_pred ceEEEeechh---hccCCCCCeEEEECHHHH-HHHHHh---------hhcCCcEEEEECCccCCcch
Confidence 6666543221 111113578999999998 444432 25689999999999863343
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.35 E-value=1.1e-12 Score=152.17 Aligned_cols=131 Identities=18% Similarity=0.096 Sum_probs=101.0
Q ss_pred ccccchhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe
Q psy2371 78 KMRHFDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS 151 (816)
Q Consensus 78 g~~p~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls 151 (816)
|+.|+|.|...+- ++.+|+ +++|+||+|||++|++|++. .+..|.|+|||++|+.|..+++..+.+.++++
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 6789999988654 345676 99999999999999999996 57899999999999999999998888888999
Q ss_pred EEEecCCCC---------------------------------HH--------------------HHHhhcCCCEEEECCC
Q psy2371 152 IGVNSSEIS---------------------------------HS--------------------LKKKSYEADITYGTNN 178 (816)
Q Consensus 152 v~~i~~~~~---------------------------------~~--------------------~r~~~y~~dI~ygT~~ 178 (816)
+.++.|..+ .. .|..+..+||+++|++
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 998776311 00 1444568999999999
Q ss_pred cchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCC
Q psy2371 179 EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEART 219 (816)
Q Consensus 179 ~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~t 219 (816)
.|--+.+++.+ .......++||||||.+. | ++.
T Consensus 158 ~l~~~~~~~~~------~~~~~~~~vIiDEAHnl~-d-~~~ 190 (551)
T 3crv_A 158 YFFIDRYREFI------DIDLREYMIVIDEAHNLD-K-VNE 190 (551)
T ss_dssp HHHCHHHHTTS------CCCSTTEEEEETTGGGGG-G-GGG
T ss_pred HhcCHHHHHhc------CCCcCCeEEEEecccchH-H-HHH
Confidence 88222233321 122467899999999998 7 764
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.18 E-value=2.6e-11 Score=125.87 Aligned_cols=112 Identities=21% Similarity=0.155 Sum_probs=87.8
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCe-EEE
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS-IGV 154 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lgls-v~~ 154 (816)
+..|+|.|..++..+.+++ |+.++||+|||+++..++.. .+..++|++|++.|+.|-.+.+.. +|++ ++.
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~----~~~~~v~~ 163 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGI----FGEEYVGE 163 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGG----GCGGGEEE
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHh----CCCCeEEE
Confidence 5689999999998777665 89999999999999888763 278899999999999986665544 5899 888
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+.++.. ..++|+++|++.+. ..+. .....+.++||||||.+.
T Consensus 164 ~~g~~~-------~~~~i~v~T~~~l~-~~~~---------~~~~~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 164 FSGRIK-------ELKPLTVSTYDSAY-VNAE---------KLGNRFMLLIFDEVHHLP 205 (237)
T ss_dssp ESSSCB-------CCCSEEEEEHHHHH-HTHH---------HHTTTCSEEEEECSSCCC
T ss_pred EeCCCC-------CcCCEEEEeHHHHH-hhHH---------HhcccCCEEEEECCccCC
Confidence 887753 36799999997762 1111 112358999999999986
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.38 E-value=3.6e-07 Score=107.57 Aligned_cols=78 Identities=17% Similarity=0.041 Sum_probs=65.0
Q ss_pred ccchhhhhhhc----cccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 80 RHFDVQLIGGI----ALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 80 ~p~~VQ~~~~~----~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
+|+|-|...+- .+.+|+ ++||+||+|||++|++|++..+. .|..+.|+|||++|+.|..+++..+....++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 57888877653 455666 99999999999999999997654 478899999999999999999999988889999
Q ss_pred EEecC
Q psy2371 153 GVNSS 157 (816)
Q Consensus 153 ~~i~~ 157 (816)
.++.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 87765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.16 E-value=2.7e-06 Score=99.96 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=58.9
Q ss_pred chhhhhhhccccCCc--eeeecCCCCch--HHHHHHHHHHH--hcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeE
Q psy2371 82 FDVQLIGGIALHYGN--ISEMQTGEGKT--LVATLAAYLNS--LSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSI 152 (816)
Q Consensus 82 ~~VQ~~~~~~L~~G~--Iaem~TGEGKT--L~~~Lpa~l~a--L~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv 152 (816)
.+.|..++...+.++ ++.+++|+||| ++++++++... -.|..|.+++||..+|.|..+.++.....+|++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 688999998777776 89999999999 67777777543 2356799999999999999999998888887653
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.95 E-value=0.057 Score=62.90 Aligned_cols=107 Identities=22% Similarity=0.172 Sum_probs=73.6
Q ss_pred ccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhc-C---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 80 RHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLS-G---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~-g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
...+-|..++-.. .|. ++.+..|+|||.+.+--+....-. | ..++++|+|+-.|....+.+... +|-.
T Consensus 9 ~Ln~~Q~~av~~~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~---~~~~--- 81 (647)
T 3lfu_A 9 SLNDKQREAVAAP-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL---MGTS--- 81 (647)
T ss_dssp TCCHHHHHHHTCC-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH---HCSC---
T ss_pred cCCHHHHHHHhCC-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH---hccc---
Confidence 4577888877632 455 899999999998876655432222 2 47999999999998776655543 3311
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...+.++|...|+...|+..... ...+..+-|+|+.|..
T Consensus 82 --------------~~~~~v~Tfhs~~~~il~~~~~~-----~~~~~~~~i~~~~~~~ 120 (647)
T 3lfu_A 82 --------------QGGMWVGTFHGLAHRLLRAHHMD-----ANLPQDFQILDSEDQL 120 (647)
T ss_dssp --------------CTTCEEEEHHHHHHHHHHHTTGG-----GTCCTTCEEECHHHHH
T ss_pred --------------cCCcEEEcHHHHHHHHHHHHHHH-----hCCCCCCEEeCHHHHH
Confidence 13589999999999988875321 1123457788988864
No 96
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.62 E-value=0.026 Score=66.54 Aligned_cols=109 Identities=23% Similarity=0.225 Sum_probs=72.2
Q ss_pred cccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhc-C---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEE
Q psy2371 79 MRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLS-G---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~-g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~ 153 (816)
|..+|-|..++-.. .|. ++.+..|+|||-+.+--+...... | ..+++||.|+-.|....+.+... +|-.
T Consensus 1 ~~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~---l~~~-- 74 (673)
T 1uaa_A 1 MRLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT---LGRK-- 74 (673)
T ss_dssp -CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH---SCTT--
T ss_pred CCCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---cCcc--
Confidence 35678888887643 565 889999999998876544322222 3 57999999999988665544433 3210
Q ss_pred EecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 154 ~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
....+.++|...|+..+|+..... . .-+.++-|+|+.|..
T Consensus 75 --------------~~~~~~v~Tfhs~~~~il~~~~~~----~-g~~~~~~i~d~~~~~ 114 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGLDIIKREYAA----L-GMKANFSLFDDTDQL 114 (673)
T ss_dssp --------------TTTTSEEEEHHHHHHHHHHHHHHH----T-TCCCCCCEECHHHHH
T ss_pred --------------cccCCEEEeHHHHHHHHHHHHHHH----h-CCCCCCEEeCHHHHH
Confidence 013588999999999999875321 1 112356788988764
No 97
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.60 E-value=0.082 Score=63.09 Aligned_cols=107 Identities=22% Similarity=0.176 Sum_probs=72.0
Q ss_pred ccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHh-cC---CcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEE
Q psy2371 80 RHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSL-SG---QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL-~g---~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~ 154 (816)
.+.|-|..++-.. .|. ++.+.-|+|||-+.+--+..... .| ..+++||.|+-.|....+.+..+ +|-.
T Consensus 11 ~Ln~~Q~~av~~~-~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~---l~~~--- 83 (724)
T 1pjr_A 11 HLNKEQQEAVRTT-EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL---LGGA--- 83 (724)
T ss_dssp TSCHHHHHHHHCC-SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH---HGGG---
T ss_pred hCCHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---hccc---
Confidence 4678888877653 566 89999999999887755442222 23 46999999997777555444333 2210
Q ss_pred ecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhh
Q psy2371 155 NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 155 i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~ 212 (816)
...+.++|...|+...|+..... ..-+.+|-|+|+.|..
T Consensus 84 --------------~~~~~v~Tfhs~~~~ilr~~~~~-----~g~~~~f~i~d~~d~~ 122 (724)
T 1pjr_A 84 --------------AEDVWISTFHSMCVRILRRDIDR-----IGINRNFSILDPTDQL 122 (724)
T ss_dssp --------------GTTSEEEEHHHHHHHHHHHHGGG-----GTCCTTCEECCHHHHH
T ss_pred --------------ccCcEEeeHHHHHHHHHHHHHHH-----hCCCCCCEECCHHHHH
Confidence 12478999999999999876421 1123467899998864
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.51 E-value=0.0071 Score=71.26 Aligned_cols=60 Identities=17% Similarity=-0.002 Sum_probs=42.7
Q ss_pred chhhhhhhcccc-CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHH
Q psy2371 82 FDVQLIGGIALH-YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141 (816)
Q Consensus 82 ~~VQ~~~~~~L~-~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~ 141 (816)
.+-|..|+...+ ... |++++.|+|||-+.+-.+....-.|..|+|+|||..=+....+.+
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHH
Confidence 467888876443 332 999999999998766555544457889999999976555444433
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.34 E-value=0.0097 Score=69.91 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=43.7
Q ss_pred cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHH-hcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 81 HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNS-LSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~a-L~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
..+-|..++-.++.+. ++++++|+|||.+.+-.+.... ..+..|+|++||.--|.+..+.+.
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 4567877776544433 8999999999977554333211 257789999999988887776554
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.034 Score=67.30 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=45.7
Q ss_pred cchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHH-HHhcCCcEEEEeCcHHHHHHHHHHHHH
Q psy2371 81 HFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYL-NSLSGQGVHIVTISDYLAKRDAEWMSV 143 (816)
Q Consensus 81 p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l-~aL~g~~V~VvT~n~yLA~Rd~e~~~~ 143 (816)
..+-|..++-.++.+. +++++.|+|||.+.+-.+.. ....+..|+|+|||..-|.+..+.+..
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 4577888876655544 89999999999765543332 223688999999999888877766544
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.71 E-value=0.012 Score=68.65 Aligned_cols=62 Identities=19% Similarity=0.026 Sum_probs=45.3
Q ss_pred cccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHH
Q psy2371 79 MRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEW 140 (816)
Q Consensus 79 ~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~ 140 (816)
....+-|..++-.+..+. +..+..|+|||.+..--+....-.|..|.+++||.-.|.+..+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 344678888876655554 88999999999664443333334688999999999999876654
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.65 E-value=0.025 Score=68.45 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=44.4
Q ss_pred ccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHH-HhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 80 RHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLN-SLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 80 ~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~-aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
...+-|..++-.++.+. +++++.|+|||.+.+-.+... ...+..|+|++||.--|.+..+.+.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 34677888776554444 899999999997654333321 1257889999999988887766554
No 103
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.68 E-value=0.15 Score=57.23 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCC-cEEEEeCcHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQ-GVHIVTISDYLAKRDAE 139 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~-~V~VvT~n~yLA~Rd~e 139 (816)
+..+..|+|||.+...-+....-.|. .|.++|||.-.|....+
T Consensus 49 li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 49 TINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 88999999999655433322222454 79999999888775444
No 104
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.50 E-value=0.26 Score=62.35 Aligned_cols=126 Identities=16% Similarity=0.085 Sum_probs=75.0
Q ss_pred hccccchhhhhhhccccCCc-eeeecCCCCchHHHHHHHHHHHhcCC------cEEEEeCcHHHHHHHHHHHHHHhh-hc
Q psy2371 77 LKMRHFDVQLIGGIALHYGN-ISEMQTGEGKTLVATLAAYLNSLSGQ------GVHIVTISDYLAKRDAEWMSVLYN-WL 148 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~------~V~VvT~n~yLA~Rd~e~~~~l~~-~l 148 (816)
.++..++-|..++-.- .+. ++.+.-|||||-+.+--+......|. .++|+|+|+..|....+-+..... .+
T Consensus 7 ~~~~~t~eQ~~~i~~~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~ 85 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVST-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKEL 85 (1232)
T ss_dssp ---CCCHHHHHHHHCC-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCC-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHh
Confidence 4567899999988755 334 89999999999988776654444443 699999996666555544433221 11
Q ss_pred CCeEEEecCCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 149 GLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 149 glsv~~i~~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+- .++...-.+....-..+.++|-..|+...|+.+... ... ..+|-|+||.+.-+
T Consensus 86 ~~-----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~----~~~-~~~f~~~d~~~~~~ 140 (1232)
T 3u4q_A 86 VQ-----RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYL----IDL-DPGFRIADQTEGEL 140 (1232)
T ss_dssp HH-----STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGG----TTC-CTTCEECCHHHHHH
T ss_pred hc-----CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHh----cCC-CCCCeeCCHHHHHH
Confidence 11 011101112222235678899999999999876421 111 22344889876433
No 105
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=92.45 E-value=5.9 Score=49.68 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=43.3
Q ss_pred ecChHHHHHHHHHHHHhhcc-CCCc---EEEEEccc-HhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 410 YKTMEEKYQAILMDIKNCYI-KEQP---VLVGTTSI-ENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 410 ~~t~~~K~~ai~~~i~~~~~-~grp---VLVft~si-~~se~Ls~~L~~~gi~~~vLnak 464 (816)
+.+..+-...|++.|.+.+. .|.+ +-|.|++. ..+..+...|.+.|||+.+..+.
T Consensus 317 ~~~~~~Ea~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~~ 376 (1166)
T 3u4q_B 317 AANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKA 376 (1166)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSCC
T ss_pred cCChHHHHHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCCc
Confidence 35566666778888877665 4544 99999998 48999999999999999887664
No 106
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.39 E-value=3.4 Score=46.25 Aligned_cols=82 Identities=22% Similarity=0.103 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHH--HHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY--LAKRDAEW 140 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~y--LA~Rd~e~ 140 (816)
...++.+.....+|-.+.++... .|. ..-+++|+|||.++...+...+..|..|.++...-+ .|. ++
T Consensus 74 ~~~~v~~~L~~~~~~~~~~i~l~------~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~---~q 144 (425)
T 2ffh_A 74 ILATVYEALKEALGGEARLPVLK------DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---EQ 144 (425)
T ss_dssp HHHHHHHHHHHHTTSSCCCCCCC------SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHH---HH
T ss_pred HHHHHHHHHHHHhCCCcccccCC------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhH---HH
Confidence 34455555555555433333221 344 233789999997766666655667888888875322 221 12
Q ss_pred HHHHhhhcCCeEEEe
Q psy2371 141 MSVLYNWLGLSIGVN 155 (816)
Q Consensus 141 ~~~l~~~lglsv~~i 155 (816)
+..+....|+.+...
T Consensus 145 L~~~~~~~gv~v~~~ 159 (425)
T 2ffh_A 145 LRLLGEKVGVPVLEV 159 (425)
T ss_dssp HHHHHHHHTCCEEEC
T ss_pred HHHhcccCCccEEec
Confidence 333445567766543
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.35 E-value=0.15 Score=51.01 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=27.2
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
.|+ +.-+..|+|||.+++--+.-..-.|+.|.|++|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 355 5677889999977665555334578899999986
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.34 E-value=0.098 Score=51.67 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=25.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-+..|+|||..+.--+.-....|..|++++|.
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 5678889999987654444334568889999887
No 109
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.23 E-value=3.6 Score=43.51 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=25.8
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
.|+ ..-+++|+|||-++...+.+.+..|..|.++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 455 2337899999976666555556678888887653
No 110
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.18 E-value=3.1 Score=46.88 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=39.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~ 160 (816)
+.-+.+|+|||-+++-.+...+-.|+.|.+++.-.+=+ -..+++..+....|+.+.....+.+
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~-aa~eqL~~~~~~~gvpv~~~~~~~d 166 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP-GAYHQLRQLLDRYHIEVFGNPQEKD 166 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST-HHHHHHHHHHGGGTCEEECCTTCCC
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch-hHHHHHHHHHHhcCCcEEecCCCCC
Confidence 55678999999776655544456788888877332211 1135566667778888765444433
No 111
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=91.80 E-value=0.21 Score=58.17 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=53.3
Q ss_pred hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc--CCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 77 LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS--GQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 77 lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~--g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
.++.++|-|..-+-.+...+ ++.+.-|.|||-+.+.-++..++. |..+.++.+|...|+...+.+..+++.++
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 34567788866544443334 899999999998766555545554 34699999999999999888888887654
No 112
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.44 E-value=0.28 Score=54.38 Aligned_cols=72 Identities=14% Similarity=0.011 Sum_probs=52.1
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc--CCcEEEEeCcHHHHHHHHHHHHHHhhhcC
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS--GQGVHIVTISDYLAKRDAEWMSVLYNWLG 149 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~--g~~V~VvT~n~yLA~Rd~e~~~~l~~~lg 149 (816)
++.++|-|..-+-.+...+ ++.+.-+.|||-+++.-++..++. |..|.++.+|..-|+...+.+.++++.+.
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4567777765443332223 889999999998766666555554 45699999999999988888888887643
No 113
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.39 E-value=3.6 Score=46.19 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHhcccCCCcchhh--HHHHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHH
Q psy2371 37 SDEELQNQTSKLKQSIHSGETLDSIL--PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATL 112 (816)
Q Consensus 37 sd~~l~~~~~~~~~~~~~g~~ld~~l--~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~L 112 (816)
.-+-.++-..++++++...+....+- ..+..++.+...+.+|-...+. .+.-..+. +.-+++|+|||-++.-
T Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~~----~~~~~~~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 41 NVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPN----VNPTKLPFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCCC----CSCCSSSEEEEECCCTTSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCcccccc----ccccCCCeEEEEECCCCCCHHHHHHH
Confidence 33444455555666654333222221 2355667777666666421110 00001233 4458899999977665
Q ss_pred HHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 113 AAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 113 pa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
.+...+-.|+.|.+++.--|=+. ..+.+..+....|+.+....
T Consensus 117 LA~~l~~~G~kVllv~~D~~r~~-a~eqL~~~~~~~gv~~~~~~ 159 (433)
T 3kl4_A 117 LAYFYKKRGYKVGLVAADVYRPA-AYDQLLQLGNQIGVQVYGEP 159 (433)
T ss_dssp HHHHHHHTTCCEEEEEECCSCHH-HHHHHHHHHHTTTCCEECCT
T ss_pred HHHHHHHcCCeEEEEecCccchh-HHHHHHHHHHhcCCceeecc
Confidence 55555667888888773322111 13345555666777665433
No 114
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.90 E-value=5 Score=44.92 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCcHHHHHHHHHHHH
Q psy2371 66 FSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 66 ~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
..++++...+.+|-...++.... ...+ +.-+++|+|||-+++-.++..+.. |+.|.++..-.+-+.- .+++.
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~----~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a-~~ql~ 149 (433)
T 2xxa_A 75 VKIVRNELVAAMGEENQTLNLAA----QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA-IKQLE 149 (433)
T ss_dssp HHHHHHHHHHHHCSSSCCCCCCS----SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH-HHHHH
T ss_pred HHHHHHHHHHHhccccccccccC----CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH-HHHHH
Confidence 34556666666664332222110 0112 233789999997666555555666 9999988765432110 11233
Q ss_pred HHhhhcCCeEEE
Q psy2371 143 VLYNWLGLSIGV 154 (816)
Q Consensus 143 ~l~~~lglsv~~ 154 (816)
.+....|+.+..
T Consensus 150 ~~~~~~~l~v~~ 161 (433)
T 2xxa_A 150 TLAEQVGVDFFP 161 (433)
T ss_dssp HHHHHHTCEECC
T ss_pred hhcccCCeeEEe
Confidence 344556776643
No 115
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.18 E-value=16 Score=38.48 Aligned_cols=111 Identities=18% Similarity=0.102 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHhcccCCCcchhhH--HHHHHHHHHHHHHhccccch-hhhhhhccccCCc--eeeecCCCCchHHH
Q psy2371 36 LSDEELQNQTSKLKQSIHSGETLDSILP--KAFSVCREASKRVLKMRHFD-VQLIGGIALHYGN--ISEMQTGEGKTLVA 110 (816)
Q Consensus 36 lsd~~l~~~~~~~~~~~~~g~~ld~~l~--ea~a~vrea~~R~lg~~p~~-VQ~~~~~~L~~G~--Iaem~TGEGKTL~~ 110 (816)
.+.+--++....+++++...+-...+-| ....++.+...+.+|-.+.+ +... . .|. ..-+++|+|||-++
T Consensus 41 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~----~-~~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 41 VNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPD----K-IPYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCCCCSCS----S-SSEEEEEECSSCSSTTHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhccccccccccC----C-CCeEEEEECCCCCCHHHHH
Confidence 3444444444555555433222222222 23455556666666644333 2211 1 244 33478999999766
Q ss_pred HHHHHHHHhcCCcEEEEeCcHH--HHHHHHHHHHHHhhhcCCeEEE
Q psy2371 111 TLAAYLNSLSGQGVHIVTISDY--LAKRDAEWMSVLYNWLGLSIGV 154 (816)
Q Consensus 111 ~Lpa~l~aL~g~~V~VvT~n~y--LA~Rd~e~~~~l~~~lglsv~~ 154 (816)
...+...+..|..|.++....+ .|. +.+..+.+..|+.+..
T Consensus 116 ~~la~~~~~~g~~v~l~~~D~~r~~a~---~ql~~~~~~~~v~v~~ 158 (297)
T 1j8m_F 116 GKLAYFYKKKGFKVGLVGADVYRPAAL---EQLQQLGQQIGVPVYG 158 (297)
T ss_dssp HHHHHHHHHTTCCEEEEECCCSSSHHH---HHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHH---HHHHHHhccCCeEEEe
Confidence 6666656677888888876522 221 1233334456776543
No 116
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.85 E-value=7.6 Score=43.36 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=73.7
Q ss_pred CcchhhHHHHHHHHHHHHHHhcc--ccchhh----hhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEE
Q psy2371 57 TLDSILPKAFSVCREASKRVLKM--RHFDVQ----LIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIV 127 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R~lg~--~p~~VQ----~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~Vv 127 (816)
++.+++.+++.-+.+.....-+. -|+.+. +.++ +..|. +.-+.+|.|||..+.--+...+. .|..|.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~~gG--l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 161 NIKDILVQTYDNIEMLHNRDGEITGIPTGFTELDRMTSG--FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCCSBCCSCHHHHHHHSS--BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHhhcCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 45567777777765443211001 122221 1122 45677 78899999999665555553444 47788887
Q ss_pred eCc---HHHHHHHHHHHHHHhhhcCCeEEE-ecCCCCHHHHHh-------hcCCCEEEECCCcchhhhhhhhhccCCCcc
Q psy2371 128 TIS---DYLAKRDAEWMSVLYNWLGLSIGV-NSSEISHSLKKK-------SYEADITYGTNNEFGFDYLRDNMVFNSNDR 196 (816)
Q Consensus 128 T~n---~yLA~Rd~e~~~~l~~~lglsv~~-i~~~~~~~~r~~-------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~ 196 (816)
+.. ..|+.|... ..+|+...- ..|.++.++... ....++.+-.++.+..+-++..+.. -.
T Consensus 239 s~E~s~~~l~~r~~~------~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~---l~ 309 (454)
T 2r6a_A 239 SLEMSAQQLVMRMLC------AEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRR---LK 309 (454)
T ss_dssp ESSSCHHHHHHHHHH------HHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHH---HH
T ss_pred ECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH---HH
Confidence 743 344444211 122222111 123344332211 1133555555555544555543311 01
Q ss_pred ccccceEEEecchhhhh
Q psy2371 197 VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 197 ~~r~~~~~IvDEaDs~L 213 (816)
...++.++|||+...|.
T Consensus 310 ~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 310 QESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp TTTCCCEEEEECGGGSC
T ss_pred HHcCCCEEEEccHHHhc
Confidence 12368999999999876
No 117
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.11 E-value=6.3 Score=43.90 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=70.1
Q ss_pred cchhhHHHHHHHHHHHHHH-------hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEE
Q psy2371 58 LDSILPKAFSVCREASKRV-------LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIV 127 (816)
Q Consensus 58 ld~~l~ea~a~vrea~~R~-------lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~Vv 127 (816)
+.+++.++|.-+.+...+. +|+..-|--. +| +..|. +.-+.+|.|||.-++--+...+. .|..|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l-gG--l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 159 MRELVHETFEHIEALFQNKGEVAGVRTGFKELDQLI-GT--LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp HHHHHHHHHHHTTC----------CCCSCHHHHHHH-CC--CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccCCCHhhhhhc-CC--cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4566677776664332211 1222222222 33 45676 78899999999544444443333 36778877
Q ss_pred eC---cHHHHHHHHHHHHHHhhhcCCeEEE-ecCCCCHHHHHh-------hcCCCEEEECCCcchhhhhhhhhccCCCcc
Q psy2371 128 TI---SDYLAKRDAEWMSVLYNWLGLSIGV-NSSEISHSLKKK-------SYEADITYGTNNEFGFDYLRDNMVFNSNDR 196 (816)
Q Consensus 128 T~---n~yLA~Rd~e~~~~l~~~lglsv~~-i~~~~~~~~r~~-------~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~ 196 (816)
+. ...|+.|-.. ...|+...- ..+.++.++... .....+.+-.++.+..+-++..+.. -.
T Consensus 236 slE~~~~~l~~R~~~------~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~---l~ 306 (444)
T 2q6t_A 236 SLEMPAAQLTLRMMC------SEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARR---LV 306 (444)
T ss_dssp ESSSCHHHHHHHHHH------HHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHH---HH
T ss_pred ECCCCHHHHHHHHHH------HHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH---HH
Confidence 65 2344444221 122332211 123344433211 1123455544444444445543310 11
Q ss_pred ccccceEEEecchhhhh
Q psy2371 197 VQRKLNFVILDEIDSIL 213 (816)
Q Consensus 197 ~~r~~~~~IvDEaDs~L 213 (816)
...++..+|||....|.
T Consensus 307 ~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 307 SQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp HHSCCCEEEEECGGGCB
T ss_pred HHcCCCEEEEcChhhcC
Confidence 12468999999999876
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.95 E-value=14 Score=39.28 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHH
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMS 142 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~ 142 (816)
+...+++...+.++-.. +... ....|+ ..-+.+|+|||-++...+...+..|..|.++....+=+ ...+.+.
T Consensus 79 ~~~~~~~~l~~~l~~~~-~~~~----~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-~a~eqL~ 152 (306)
T 1vma_A 79 ALESLKEIILEILNFDT-KLNV----PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-AAIEQLK 152 (306)
T ss_dssp HHHHHHHHHHHHTCSCC-CCCC----CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-CCcc----cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-HHHHHHH
Confidence 44556666666665322 2111 122455 35578999999766666655566788888776432100 0112333
Q ss_pred HHhhhcCCeE
Q psy2371 143 VLYNWLGLSI 152 (816)
Q Consensus 143 ~l~~~lglsv 152 (816)
.+.+.+|+.+
T Consensus 153 ~~~~~~gl~~ 162 (306)
T 1vma_A 153 IWGERVGATV 162 (306)
T ss_dssp HHHHHHTCEE
T ss_pred HHHHHcCCcE
Confidence 4445567765
No 119
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=81.63 E-value=4.4 Score=43.91 Aligned_cols=113 Identities=12% Similarity=-0.014 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccC
Q psy2371 413 MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRG 492 (816)
Q Consensus 413 ~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRG 492 (816)
...|+.-+-+.+....+.|-.||||+++...-+.|-.+|...|+.+.-+.|....++... ...+-.|.+.|.=+|=|
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k~---~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAA---NDFSCTVHLFSSEGINF 183 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC----------CCSEEEEEEESSCCCT
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhhc---ccCCceEEEEECCCCCC
Confidence 457887666666666778889999999999999999999999999999999854444332 12233555556534445
Q ss_pred ccccCCCCchhhHHHhhhcchhhHHHHHHHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchh-hhhcCccCCC
Q psy2371 493 TDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRID-NQLRGRSGRQ 566 (816)
Q Consensus 493 tDI~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid-~Q~~GRtGRq 566 (816)
++..+- | -.+--.||-+|-.=++..+ .|..-|+-|-
T Consensus 184 in~~~~-n-------------------------------------l~~aD~VI~~DsdwNp~~d~iQa~~r~~R~ 220 (328)
T 3hgt_A 184 TKYPIK-S-------------------------------------KARFDMLICLDTTVDTSQKDIQYLLQYKRE 220 (328)
T ss_dssp TTSCCC-C-------------------------------------CSCCSEEEECSTTCCTTSHHHHHHHCCC--
T ss_pred cCcccc-c-------------------------------------CCCCCEEEEECCCCCCCChHHHHHHHHhhh
Confidence 543100 0 0012289999998889888 7866665554
No 120
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=81.20 E-value=11 Score=42.27 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHhcccCCCcchhhHH--HHHHHHHHHHHHhccccchhhhhhhccccCC---c-eeeecCCCCchHHH
Q psy2371 37 SDEELQNQTSKLKQSIHSGETLDSILPK--AFSVCREASKRVLKMRHFDVQLIGGIALHYG---N-ISEMQTGEGKTLVA 110 (816)
Q Consensus 37 sd~~l~~~~~~~~~~~~~g~~ld~~l~e--a~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G---~-Iaem~TGEGKTL~~ 110 (816)
....-+.....+|++....+.++++-|. ...++++.....+|..+.+.. +..| . +.-+++|+|||-++
T Consensus 43 ~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~~~~~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 43 NVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLE------LNPKKQNVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHHCCSCCCCC------CCSSSCCCEEEECCSSSSTTHHH
T ss_pred CHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHhCCCCcCcc------ccCCCCeEEEEECCCCCCHHHHH
Confidence 3333344444555554333444444332 345566666666654422211 1112 2 34567999999655
Q ss_pred HHHHHHHHhcCCcEEEEeCcHH--HHHHHHHHHHHHhhhcCCeEEEec-CCCCHH---HH--HhhcCCC-EEEECCCcch
Q psy2371 111 TLAAYLNSLSGQGVHIVTISDY--LAKRDAEWMSVLYNWLGLSIGVNS-SEISHS---LK--KKSYEAD-ITYGTNNEFG 181 (816)
Q Consensus 111 ~Lpa~l~aL~g~~V~VvT~n~y--LA~Rd~e~~~~l~~~lglsv~~i~-~~~~~~---~r--~~~y~~d-I~ygT~~~l~ 181 (816)
.-.+...+-.|+.|.+++.-.+ -| .+++..+....|+.+.... .+.++. .+ ....++| |++=|||.+.
T Consensus 117 ~~La~~l~~~G~kVllv~~D~~r~~a---~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 117 AKLARYIQKRGLKPALIAADTYRPAA---YEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKADVLIIDTAGRHK 193 (432)
T ss_dssp HHHHHHHHHHHCCEEEECCSCCCTTG---GGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTSSCSEEEEECCCSCS
T ss_pred HHHHHHHHHcCCeEEEEeccccCchH---HHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCcc
Confidence 5444444566888988875422 11 1122333445677765443 222211 01 1113456 4566998875
Q ss_pred h
Q psy2371 182 F 182 (816)
Q Consensus 182 f 182 (816)
.
T Consensus 194 ~ 194 (432)
T 2v3c_C 194 E 194 (432)
T ss_dssp S
T ss_pred c
Confidence 4
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.05 E-value=2.1 Score=45.70 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=19.9
Q ss_pred cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 179 EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 179 ~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
..+.|-+|+....-.......+..++||||||.|-
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC
Confidence 45556555432211111123467899999999975
No 122
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.44 E-value=2.4 Score=43.36 Aligned_cols=34 Identities=12% Similarity=-0.112 Sum_probs=22.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-+.-|+|||..++--+.-....|+.|.|++|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 5556668999954444444334568889999984
No 123
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.23 E-value=7.1 Score=41.82 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhcccc-----chhhhhhhccccCCc--eeeecCCCCchHHHH
Q psy2371 39 EELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRH-----FDVQLIGGIALHYGN--ISEMQTGEGKTLVAT 111 (816)
Q Consensus 39 ~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p-----~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~ 111 (816)
+--+..+..+++++...+..+ ....++++...+.++-.. .++... ...|+ ..-+++|+|||-++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~l~~~----~~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 52 KMVLKVSNLVRKKTKRDTSFE----NIKDALVESLYQAYTDNDWTNKKYRIDFK----ENRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp HHHHHHHHHHHHHCCTTCCHH----HHHHHHHHHHHHHHHCSCC----CCCCCC----TTSCEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHH----HHHHHHHHHHHHHhCcccccccccCcccc----CCCCeEEEEECCCCCCHHHHHH
Confidence 333444445555543322212 145667777777776433 233321 23455 334679999997666
Q ss_pred HHHHHHHhcCCcEEEEeC
Q psy2371 112 LAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 112 Lpa~l~aL~g~~V~VvT~ 129 (816)
..+...+..|+.|.++..
T Consensus 124 ~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 124 KMANYYAELGYKVLIAAA 141 (320)
T ss_dssp HHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHCCCeEEEEeC
Confidence 555555667888888754
No 124
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=78.17 E-value=7.1 Score=37.38 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=45.9
Q ss_pred HHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 114 AYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 114 a~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
-++....+..++|.|++..-+...++.+. ..|+.+..+.|++++.+|.... ..+|+++|.
T Consensus 24 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~----~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 24 DLLDVLEFNQVVIFVKSVQRCIALAQLLV----EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp HHHHHSCCSSEEEECSSHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred HHHHhCCCCcEEEEECCHHHHHHHHHHHH----hcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 34455677889999999988876665554 4599999999999987765442 568999995
No 125
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=78.01 E-value=7.9 Score=36.52 Aligned_cols=61 Identities=10% Similarity=-0.009 Sum_probs=46.0
Q ss_pred HHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 113 AAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 113 pa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.-++....+..++|.|++..-+...++.+ ...|+++..+.|+++..+|.... ..+|+++|.
T Consensus 27 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L----~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 27 KDVLMTENPDSCIIFCRTKEHVNQLTDEL----DDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHH----HHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 33445566778999999998877666554 44699999999999987765432 468999984
No 126
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=77.28 E-value=5 Score=38.37 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=45.2
Q ss_pred HHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 115 YLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 115 ~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
++..+.+..++|.|++..-|...++.+ ...|+.+..+.|++++.+|.... ..+|+++|.
T Consensus 28 ll~~~~~~~~lVF~~~~~~~~~l~~~L----~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 28 IYGSITIGQAIIFCQTRRNAKWLTVEM----IQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHTTSCCSEEEEECSCHHHHHHHHHHH----HTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHhCCCCCEEEEECCHHHHHHHHHHH----HHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 334455678999999998888766554 45699999999999988776443 568999995
No 127
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=77.17 E-value=7.7 Score=36.63 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=45.7
Q ss_pred HHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 114 AYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 114 a~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
-++....+..++|.++|..-|...++.+. ..|+.+..+.|+++..+|.... ...|+++|.
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLR----NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHH----HcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34455677889999999988876666554 4689999999999987775442 468999984
No 128
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.98 E-value=18 Score=41.34 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=34.1
Q ss_pred eeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEe
Q psy2371 98 SEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVN 155 (816)
Q Consensus 98 aem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i 155 (816)
.-+.+|+|||-++.-.++..+..|+.|.+|+.-.+=+ -..+|+.......|+.+...
T Consensus 106 ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~-aa~~qL~~~~~~~~i~v~~~ 162 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA-GAFDQLKQNATKARIPFYGS 162 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS-HHHHHHHHHHHHHTCCEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch-hHHHHHHHHhhccCceEEcc
Confidence 3478999999655544443455699999988632110 11234555555667776554
No 129
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=76.19 E-value=9.6 Score=37.80 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 115 YLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 115 ~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
++....+..++|.|++..-+...++.+ ...|+.+..+.|+++..+|.... ..+|+++|+
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 25 LLYVASPDRAMVFTRTKAETEEIAQGL----LRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp HHHHHCCSCEEEECSSHHHHHHHHHHH----HHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHhCCCCeEEEEeCCHHHHHHHHHHH----HHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 334566889999999988776555544 45699999999999987766443 468999996
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=75.46 E-value=4.1 Score=40.89 Aligned_cols=35 Identities=31% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+|. ++--.+|.|||-+++--++-.+-.|..|.|+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455 56667799999777666664556789999994
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=74.22 E-value=1.6 Score=45.46 Aligned_cols=15 Identities=40% Similarity=0.326 Sum_probs=12.9
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||.++-
T Consensus 71 ll~G~~GtGKT~la~ 85 (309)
T 3syl_A 71 SFTGNPGTGKTTVAL 85 (309)
T ss_dssp EEEECTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999997664
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=71.15 E-value=2.8 Score=39.66 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=13.0
Q ss_pred CCc--eeeecCCCCchHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVAT 111 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~ 111 (816)
.|. +.-+++|+|||-.+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 454 567999999985433
No 133
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=70.31 E-value=28 Score=33.37 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=57.3
Q ss_pred ecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCcc
Q psy2371 410 YKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMA 489 (816)
Q Consensus 410 ~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmA 489 (816)
+.+..+-...|++.|.+......-+-|.|++...+..+.+.|...|+++.+++.... ...+.|+|.|==.
T Consensus 40 ~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~----------~~~~~v~v~t~~~ 109 (174)
T 3dmn_A 40 TPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ----------RLAPGVIVVPSFL 109 (174)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-----------CCCSSEEEEEGGG
T ss_pred eCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc----------ccCCCeEEEEccc
Confidence 345566666777777652222345889999999999999999999999999876532 1346799999888
Q ss_pred ccCccc
Q psy2371 490 GRGTDI 495 (816)
Q Consensus 490 GRGtDI 495 (816)
.-|.-+
T Consensus 110 ~KGlEf 115 (174)
T 3dmn_A 110 AKGLEF 115 (174)
T ss_dssp CTTCCE
T ss_pred cCCcCC
Confidence 899887
No 134
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.99 E-value=11 Score=38.41 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.4
Q ss_pred eeeecCCCCchHHHHH
Q psy2371 97 ISEMQTGEGKTLVATL 112 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L 112 (816)
+..+++|+|||..+-.
T Consensus 68 Ll~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 7889999999987653
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.39 E-value=2.8 Score=44.04 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=12.2
Q ss_pred cceEEEecchhhhh
Q psy2371 200 KLNFVILDEIDSIL 213 (816)
Q Consensus 200 ~~~~~IvDEaDs~L 213 (816)
+..++||||+|.+-
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999874
No 136
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=68.28 E-value=4 Score=40.26 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=24.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|+-.++|+|||.+++-.+...+..|+.|.++
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 5567899999987777666567789888875
No 137
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.88 E-value=8.6 Score=40.61 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISD 131 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~ 131 (816)
.|. ..-+++|+|||-++...+...+. .|+.|.++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 455 45688999999776666655554 788888887543
No 138
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=65.24 E-value=19 Score=30.96 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHhhccCCCcEEEEEc--ccHhHHHHHHHHHhCCCCeEEEcCCc----hHHHHHHHHHcCC
Q psy2371 420 ILMDIKNCYIKEQPVLVGTT--SIENSELLSNILKKNNLPHSVLNAKQ----HKLEAQIIAQAGH 478 (816)
Q Consensus 420 i~~~i~~~~~~grpVLVft~--si~~se~Ls~~L~~~gi~~~vLnak~----~~rEa~ii~~Ag~ 478 (816)
|.+.|+.+...|.|..||++ |...+..+...-++.|+...||.... .+|-++...-||.
T Consensus 40 irdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflktags 104 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhccc
Confidence 33444556678999999996 56778888889999999999998863 3455666666763
No 139
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=64.74 E-value=15 Score=42.85 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=62.2
Q ss_pred hhcchhcccccccchHHHHHHHhcCe--EEEcCCCCcccccc-----CcCeEecCh-HHHHHHHHHHHHhhc--cCCCcE
Q psy2371 365 MYKKISGMTGTAETEAYEFQEIYKLE--TITVPPNKINKRKD-----LQDKIYKTM-EEKYQAILMDIKNCY--IKEQPV 434 (816)
Q Consensus 365 ~Y~~l~GmTGTa~te~~e~~~~Y~l~--vv~IPt~~p~~r~d-----~~d~v~~t~-~~K~~ai~~~i~~~~--~~grpV 434 (816)
......-++||+.. -+.|.+..|++ .+.+|+..+..... .....|.+. .+-+..+.+.+.+.. ..| .+
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g-~~ 451 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKK-NT 451 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCS-CE
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCC-CE
Confidence 34445566777765 45566666663 34555443321110 000111111 222344444444332 244 49
Q ss_pred EEEEcccHhHHHHHHHHHhCCCCeEEEcCC--chHHHHHHHHHcCCCccEEEecC--ccccCcccc
Q psy2371 435 LVGTTSIENSELLSNILKKNNLPHSVLNAK--QHKLEAQIIAQAGHPKMITIATN--MAGRGTDII 496 (816)
Q Consensus 435 LVft~si~~se~Ls~~L~~~gi~~~vLnak--~~~rEa~ii~~Ag~~g~VtIATn--mAGRGtDI~ 496 (816)
|||++|-...+.+++.|+ .+... +.-. ..+++.-+-.+. ..++|++||- -..-|+|++
T Consensus 452 lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~ 513 (620)
T 4a15_A 452 IVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFP 513 (620)
T ss_dssp EEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC-------
T ss_pred EEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCC
Confidence 999999999999998887 23322 2111 123444444456 5789999974 899999996
No 140
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=64.57 E-value=16 Score=38.66 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=51.0
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhc------CCcEEEEeCcHHH-HHHHHHHHHHHhhhcCCeEEEecCCCCHHHH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLS------GQGVHIVTISDYL-AKRDAEWMSVLYNWLGLSIGVNSSEISHSLK 164 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~------g~~V~VvT~n~yL-A~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r 164 (816)
.|. +.-+++|+|||..+.--+...++. |.+|..++...-+ ..|..+.+ +.+|+ +.++-
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~----~~~g~---------~~~~~ 172 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA----KALGL---------DIDNV 172 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH----HHTTC---------CHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH----HHhCC---------CHHHH
Confidence 566 678999999997665555432333 5567666654322 33333332 33443 22211
Q ss_pred HhhcCCCEEEECCCcch-----hhhhhhhhccCCCcccc-ccceEEEecchhhhhh
Q psy2371 165 KKSYEADITYGTNNEFG-----FDYLRDNMVFNSNDRVQ-RKLNFVILDEIDSILI 214 (816)
Q Consensus 165 ~~~y~~dI~ygT~~~l~-----fDyLrD~~~~~~~~~~~-r~~~~~IvDEaDs~Li 214 (816)
. ..|.|..+.... +..++..+ .. .+.+.+|||++..++.
T Consensus 173 ~----~~l~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 173 M----NNIYYIRAINTDHQIAIVDDLQELV-------SKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp H----HTEEEEECCSHHHHHHHHHHHHHHH-------HHCTTEEEEEETTTTHHHH
T ss_pred h----ccEEEEeCCCHHHHHHHHHHHHHHH-------HhccCCCEEEEeCcHHHhh
Confidence 1 135555443211 11222222 11 4689999999999884
No 141
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=63.33 E-value=5.2 Score=40.87 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=26.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
++-.+.|+|||.+++-.++..+..|+.|++|=.
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 566799999998777766666778999988764
No 142
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=62.57 E-value=10 Score=40.12 Aligned_cols=15 Identities=47% Similarity=0.415 Sum_probs=12.6
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 48 ll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 48 LLYGLTGTGKTAVAR 62 (387)
T ss_dssp EECBCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999997654
No 143
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=61.82 E-value=19 Score=38.12 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 112 LAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 112 Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
|.-++....+..++|.|+|..-+...++ .+...|+.+..+.|++++.+|.... ..+|+++|+
T Consensus 19 L~~ll~~~~~~~~LVF~~t~~~~~~l~~----~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 19 LSDLLYVASPDRAMVFTRTKAETEEIAQ----GLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp HHHHHHHHCCSSEEEECSSHHHHHHHHH----HHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHH----HHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 3334455568899999999887665554 4445699999999999977665443 578999996
No 144
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=61.61 E-value=5.9 Score=39.27 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=25.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+.|+|||.+++-.+...+..|+.|.++-..
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4557899999987776666567779999888543
No 145
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=61.42 E-value=6.5 Score=41.87 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=28.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++.|+|||.+++-.++..|..|+.|++|...
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6778999999987777776667789999998875
No 146
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=61.29 E-value=5.9 Score=42.37 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=28.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++.|+|||.+++..+...|-.|+.|++|...
T Consensus 23 v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6788999999988777777667789999999876
No 147
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=61.14 E-value=5.9 Score=38.18 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=26.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+.|+|||.+++-.+...+..|+.|.++-..
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3456889999987777776667789999998765
No 148
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=60.28 E-value=20 Score=34.90 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=41.7
Q ss_pred CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 121 g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
+..++|.|++..-+...++.+ ...|+++..+.|+++..+|.... .++|+++|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L----~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYL----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHH----HHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCCEEEEECCHHHHHHHHHHH----HHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 557999999998887766655 44599999999999987766443 578999984
No 149
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=60.16 E-value=3.9 Score=44.55 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.9
Q ss_pred CceeeecCCCCchHHHH
Q psy2371 95 GNISEMQTGEGKTLVAT 111 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~ 111 (816)
+-+..+++|+|||.++-
T Consensus 150 ~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp EEEEESSTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 44889999999997654
No 150
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=59.97 E-value=4.8 Score=43.30 Aligned_cols=18 Identities=6% Similarity=-0.156 Sum_probs=14.1
Q ss_pred eeeecCCCCchHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAA 114 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa 114 (816)
+.-+++|+|||+++-.-+
T Consensus 49 li~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 49 YITNADDSTKFQLVNDVM 66 (318)
T ss_dssp EEECCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 688999999998765433
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=59.79 E-value=8.1 Score=39.82 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=13.8
Q ss_pred CceeeecCCCCchHHHH
Q psy2371 95 GNISEMQTGEGKTLVAT 111 (816)
Q Consensus 95 G~Iaem~TGEGKTL~~~ 111 (816)
|-+..+++|+|||..+-
T Consensus 56 ~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp EEEEESSSSSCHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 44888999999997654
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=59.64 E-value=9 Score=36.57 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=12.4
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 42 ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 42 LFSGPPGTGKTATAI 56 (226)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 778999999997554
No 153
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=59.63 E-value=6.6 Score=39.43 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=25.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+.|+|||.+++-.+...+..|+.|.+|=..
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4567899999987777776667789888887543
No 154
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=58.90 E-value=7.4 Score=39.34 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=25.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++-.+.|+|||.+++-.+...+..|+.|.+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999999877776666677798888874
No 155
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.86 E-value=88 Score=32.90 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=48.8
Q ss_pred cCChHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhcccc--chhhhhhhccccCCc--eeeecCCCCchHHH
Q psy2371 35 KLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRH--FDVQLIGGIALHYGN--ISEMQTGEGKTLVA 110 (816)
Q Consensus 35 ~lsd~~l~~~~~~~~~~~~~g~~ld~~l~ea~a~vrea~~R~lg~~p--~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~ 110 (816)
.++.+-.++....+++++...+ +.+ -.++..++++...+.+|-.. .++. +.+..|. ..-+++|+|||-..
T Consensus 44 dv~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~----~~~~~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 44 DFGPKITVRIVERLREDIMSGK-LKS-GSEIKDALKESVLEMLAKKNSKTELQ----LGFRKPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTS-CCS-HHHHHHHHHHHHHHHHCC--CCCSCC----CCSSSCEEEEEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCC-HHHHHHHHHHHHHHHhCCcccccccc----cccCCCcEEEEEcCCCCCHHHHH
Confidence 3444444555556666654322 211 13455677777777776432 2211 1234566 46689999999766
Q ss_pred HHHHHHHHhcCCcEEEEeC
Q psy2371 111 TLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 111 ~Lpa~l~aL~g~~V~VvT~ 129 (816)
...+.+..-.|..|.+...
T Consensus 118 ~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 118 GKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp HHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHcCCeEEEEee
Confidence 5555444455666777654
No 156
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=58.36 E-value=7.5 Score=41.95 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=28.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++.|+|||-+++-.+...|..|+.|++|...
T Consensus 30 v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6778999999987777776677889999999865
No 157
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=58.01 E-value=20 Score=34.63 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=35.0
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS------YEADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~ 177 (816)
.+..++|.|++..-|...++.+ ...|+.+..+.|+++..+|... -...|+++|.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L----~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFL----YHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHH----HHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHH----HHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4678999999998877666554 4469999999999987665433 2568999985
No 158
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=57.74 E-value=7.3 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=24.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|.-.+.|+|||.+++-.+...|..|+.|++|--
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 445678999998777666666778988888743
No 159
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.74 E-value=6.2 Score=40.57 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=13.1
Q ss_pred ceeeecCCCCchHHHH
Q psy2371 96 NISEMQTGEGKTLVAT 111 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~ 111 (816)
-+..+++|+|||..+-
T Consensus 53 vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIAR 68 (310)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3788999999997654
No 160
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=57.70 E-value=7.6 Score=40.95 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=25.2
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|.-.+.|+|||.+++-.+...|..|+.|++|-.
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 141 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EECCCCCCChHHHHHHHHHHHHhCCCcEEEEEC
Confidence 455678999998777666666778999988853
No 161
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=57.36 E-value=12 Score=40.48 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=26.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-.+-|.|||.+++-.+...|..|+.|.+|--.
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5567899999987776666567779999888754
No 162
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=56.13 E-value=31 Score=36.67 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 112 LAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 112 Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
+..++....+..++|.|++..-|...++.+. ..|+.+..+.|+++.++|.... ..+|+++|.
T Consensus 249 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 249 LNTLFSKLQINQAIIFCNSTNRVELLAKKIT----DLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp HHHHHHHSCCSEEEEECSSHHHHHHHHHHHH----HHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred HHHHHhhcCCCcEEEEEecHHHHHHHHHHHH----hcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 3344455567789999999988776665554 4589999999999987766543 468999996
No 163
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=55.93 E-value=20 Score=32.09 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=32.9
Q ss_pred CC-CcEEEEE-cccHhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 430 KE-QPVLVGT-TSIENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 430 ~g-rpVLVft-~si~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
.+ +||+|+| .+-..|...+..|+..|+.+.+|+|....
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 45 8999999 68899999999999999988899887543
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.90 E-value=17 Score=41.29 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=13.8
Q ss_pred ceeeecCCCCchHHHHH
Q psy2371 96 NISEMQTGEGKTLVATL 112 (816)
Q Consensus 96 ~Iaem~TGEGKTL~~~L 112 (816)
-+..+++|+|||.++-.
T Consensus 80 lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 38889999999976653
No 165
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=55.81 E-value=7.8 Score=38.51 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=25.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~n 130 (816)
++-.+.|+|||.+++-.+...+.. |+.|.+|=-.
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 556789999998877777656666 8888887543
No 166
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=55.45 E-value=31 Score=36.38 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 112 LAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 112 Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
+..++....+..++|.+++..-|...++.+. ..|+.+..+.++++.++|.... ..+|+++|.
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLV----EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 3334455677889999999988887666554 4589999999999987765443 568999996
No 167
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=55.03 E-value=13 Score=42.32 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=42.8
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCccc
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDI 495 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI 495 (816)
|..|+|.|.|....+.|.+.|...|++........ + ..+|.|.|+.--..+|--.
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~---~-------~~~g~v~i~~g~L~~GF~~ 436 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD---E-------ASDRGRYLMIGAAEHGFVD 436 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG---G-------CCTTCEEEEESCCCSCEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh---h-------cCCCcEEEEEcccccCccc
Confidence 56799999999999999999999999866543221 1 1467888888778888866
No 168
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=54.90 E-value=28 Score=36.93 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 111 TLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 111 ~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+.-++....+..++|.|++..-|...++.+. ..|+.+..+.|+++.++|.... ..+|+++|.
T Consensus 256 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELS----KEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHHHH----HTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHH----hCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 33344455677889999999988876665554 4589999999999988776543 568999996
No 169
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=54.73 E-value=8.8 Score=40.00 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=24.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
++ ++-|+|||.+++-.+...+..|+.|.+|=-
T Consensus 46 v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 46 VY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp EE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56 799999998777666666777888888743
No 170
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=54.50 E-value=24 Score=37.10 Aligned_cols=15 Identities=40% Similarity=0.337 Sum_probs=12.6
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 49 li~G~~G~GKTtl~~ 63 (386)
T 2qby_A 49 FIYGLTGTGKTAVVK 63 (386)
T ss_dssp EEEECTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999997654
No 171
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=54.50 E-value=8.9 Score=40.25 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=26.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|.-.+.|+|||.+++-.+...|..|+.|++|-.
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 129 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTNKRVLLIDC 129 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Confidence 566788999998887777767788999988854
No 172
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=54.48 E-value=9.3 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=22.1
Q ss_pred eeeecCCCCchHHHHHHH-HHHHhcCCcEEEEeCcHH
Q psy2371 97 ISEMQTGEGKTLVATLAA-YLNSLSGQGVHIVTISDY 132 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa-~l~aL~g~~V~VvT~n~y 132 (816)
+.-+++|+|||..+-.-+ .+..-.|..+..++..+.
T Consensus 42 ~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp EECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 677899999996544333 222234766766665443
No 173
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=54.29 E-value=8.6 Score=39.87 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=25.4
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
|+-.+.|+|||.+++-.+...+..|+.|.+|=-
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 41 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDL 41 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 455789999998777777666778999888743
No 174
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=53.95 E-value=9.1 Score=44.11 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=28.9
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++.|+|||.+++-.++..|-.|+.|++|...
T Consensus 12 ~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 12 FFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6778999999988887777777889999998876
No 175
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=53.93 E-value=20 Score=31.56 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=34.0
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~ 466 (816)
.+++||+|+|.+-..|...+..|+..|+.+..|.|...
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 56789999999999999999999999998888888744
No 176
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=52.91 E-value=21 Score=37.76 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCEEEECCC--cchhhhhhhhhccCCCccccccceEEEecchhhhh
Q psy2371 170 ADITYGTNN--EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213 (816)
Q Consensus 170 ~dI~ygT~~--~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~L 213 (816)
+|+.+-.+. ..+.|-+|+-+..-.......+.+++||||||.|-
T Consensus 50 ~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 50 SDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp TTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred CCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence 344444442 45555455432211111123467999999999975
No 177
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=52.89 E-value=32 Score=39.04 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 117 NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 117 ~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
....|..++|.|+|+.-+...++.+. ..|+++....+++++++|.... ..+|+++|.
T Consensus 232 ~~~~~~~~IVf~~sr~~~e~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 232 QEQRGKSGIIYCNSRAKVEDTAARLQ----SKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred HhcCCCcEEEEeCCHHHHHHHHHHHH----HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 44467889999999988877766554 4599999999999988776543 569999998
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=52.87 E-value=19 Score=38.86 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=43.2
Q ss_pred CcchhhHHHHHHHHHHHH-HHhccc--cchh----hhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 57 TLDSILPKAFSVCREASK-RVLKMR--HFDV----QLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~-R~lg~~--p~~V----Q~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
++.+++.+++..+-+... +.-++. |+-. .+.++ +..|. +.-+.+|.|||.-++--+...+..|..|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~TG~~~LD~~~gG--l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 3 NIKEVLESAMDLITENQRKGSLEVTGIPTGFVQLDNYTSG--FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCCSBCCSCHHHHHHHCS--BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCcCcccCCChHHHHHhcC--CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456677777777766654 221121 1211 12232 45676 7889999999976655555445677788887
Q ss_pred eC
Q psy2371 128 TI 129 (816)
Q Consensus 128 T~ 129 (816)
+.
T Consensus 81 Sl 82 (338)
T 4a1f_A 81 SL 82 (338)
T ss_dssp ES
T ss_pred eC
Confidence 64
No 179
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=52.77 E-value=8.1 Score=39.30 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+-|+|||.+++-.+...+ .|+.|.+|=-.
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 5668999999987777666667 89989888654
No 180
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=52.34 E-value=6.9 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=26.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+.|+|||.+++-.+...+..|+.|++|=-.
T Consensus 11 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 44 (257)
T 1wcv_1 11 LANQKGGVGKTTTAINLAAYLARLGKRVLLVDLD 44 (257)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4456899999987777776667789999988644
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=52.33 E-value=15 Score=38.84 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.5
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 48 li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 48 TLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 678899999997654
No 182
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=52.26 E-value=21 Score=31.29 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=33.4
Q ss_pred ccCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 428 YIKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 428 ~~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
...++||+|+|.+-..|...+..|+..|+. +.+|.|...
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 346789999999999999999999999996 778887643
No 183
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=52.12 E-value=16 Score=36.02 Aligned_cols=50 Identities=30% Similarity=0.369 Sum_probs=29.0
Q ss_pred ccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeC
Q psy2371 78 KMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTI 129 (816)
Q Consensus 78 g~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~ 129 (816)
|+..-|--+-||+ ..|. +..+.+|+|||.-++=-++..+.. |..|.+++.
T Consensus 15 Gi~~LD~~l~GGl--~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 15 GIPGFDELIEGGF--PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SCTTTGGGTTTSE--ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CcHHHHHhhcCCC--CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3333343333443 3566 788999999996544333322333 666777664
No 184
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=51.96 E-value=35 Score=38.09 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=38.2
Q ss_pred CcchhhHHHHHHHHHHHHHHhccccchhh----hhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 57 TLDSILPKAFSVCREASKRVLKMRHFDVQ----LIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 57 ~ld~~l~ea~a~vrea~~R~lg~~p~~VQ----~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++.+++.+++.-+.+......|+ |+.+. +.+| +..|. |.-+.+|.|||.-++--++..+..|..|.+++
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~gi-~TG~~~LD~~lgG--l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 158 SIDEALVTVYEEIESADGNITGV-PSGFTELDRMTYG--YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CCHHHHHHHHHHHHTCCSSCCSB-CCSCHHHHHHHSS--BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHHHHHHHHHHHhhcCCCCc-CCCcHHHHhhcCC--CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 45677777776664321001111 22221 2232 45777 88999999999765554443344566666665
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=51.03 E-value=16 Score=38.63 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCcchhhHHHHHHHHHHHHHH----hccccchhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 56 ETLDSILPKAFSVCREASKRV----LKMRHFDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 56 ~~ld~~l~ea~a~vrea~~R~----lg~~p~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
.++.+++.+++..+.+..... +|+..-|-- .++ +..|. +..+.+|.|||.-++--++..+..|..|.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~-lgG--l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 28 GSIDEALVTVYEEIESADGNITGVPSGFTELDRM-TYG--YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CCCHHHHHHHHHHHHTCSSSCCSBCCSCHHHHHH-HSS--BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccHHHHHHHHHHHHHhccCCCCCccCChHHHHhh-cCC--CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 356777777777664320001 122222221 233 35676 78899999999655444443445566677666
No 186
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=50.56 E-value=11 Score=40.69 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=28.2
Q ss_pred eeeecCCCCchHHHHHHHHHHH--hcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS--LSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a--L~g~~V~VvT~n 130 (816)
+.-++.|+|||.+++-.++..| -.|+.|++|...
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 6778999999987777676667 789999999876
No 187
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=49.47 E-value=13 Score=38.49 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
.+-|+|||.+++-.++..+..|+.|.+|=-.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlliD~D 74 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMIDKD 74 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5789999987776666667789888886443
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.39 E-value=18 Score=37.89 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.5
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 62 ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 62 LFYGPPGTGKTSTIL 76 (353)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999996653
No 189
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=49.12 E-value=27 Score=36.69 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=45.3
Q ss_pred HHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 114 AYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 114 a~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.++....+..++|.+++..-|...++.+ +..|..+..+.++++.++|.... ..+|+++|.
T Consensus 236 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 236 ELYGLMTIGSSIIFVATKKTANVLYGKL----KSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp HHHTTTTSSEEEEECSCHHHHHHHHHHH----HHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred HHHHhccCCCEEEEeCCHHHHHHHHHHH----HhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 3334456778999999998887666554 44589999999999987766543 568999986
No 190
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.90 E-value=1.1e+02 Score=35.66 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=55.0
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNS 193 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~ 193 (816)
.|..|+|.|+|..-|.+.++.+. ..|+++.++.++++..+|... -..+|++||+-= .
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~----~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l------~------- 506 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLK----EIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL------R------- 506 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHH----HTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCC------S-------
T ss_pred cCCeEEEEECCHHHHHHHHHHHH----hcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchh------h-------
Confidence 57789999999888876665544 459999999999988777654 257999998621 1
Q ss_pred CccccccceEEEecchhhh
Q psy2371 194 NDRVQRKLNFVILDEIDSI 212 (816)
Q Consensus 194 ~~~~~r~~~~~IvDEaDs~ 212 (816)
.-+....++++|+=++|..
T Consensus 507 ~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp TTCCCTTEEEEEETTTTCC
T ss_pred CCcccCCCCEEEEeCcccc
Confidence 1223456788888877653
No 191
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=48.78 E-value=11 Score=40.48 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=28.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++-|+|||-+++-.++..|..|+.|++|...
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 6677999999988777777677889999999876
No 192
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.42 E-value=8.5 Score=43.16 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=13.2
Q ss_pred eeeecCCCCchHHHHH
Q psy2371 97 ISEMQTGEGKTLVATL 112 (816)
Q Consensus 97 Iaem~TGEGKTL~~~L 112 (816)
|..+++|+|||..+-.
T Consensus 54 LL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 54 ILWGPPGTGKTTLAEV 69 (447)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 7889999999976643
No 193
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.34 E-value=1.4e+02 Score=31.87 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=32.8
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHH-HHHHHHHHHHHHhhhcCCeEE
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY-LAKRDAEWMSVLYNWLGLSIG 153 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~y-LA~Rd~e~~~~l~~~lglsv~ 153 (816)
.|. ..-+++|+|||-.....+.+..-.|..|.+..-.-+ .+ ..+++..+.+.+|+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~--a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG--AIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT--HHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc--hHHHHHHHHHHcCceEE
Confidence 465 567899999997655555444455666766643221 11 12233444556666554
No 194
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=48.33 E-value=12 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=22.2
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
.+.|+|||.+++-.++..+..|+.|.+|
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 9 GKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5899999987777666566778888776
No 195
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=48.08 E-value=13 Score=36.68 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=23.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++-.+.|+|||.+++-.+...+..| .|.++=
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 4557899999987776666667778 888865
No 196
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=47.80 E-value=18 Score=31.27 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
.+++||+|+|.+-..|...+..|++.|+.+.+|.|..
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3578999999999999999999999999777887753
No 197
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=47.55 E-value=18 Score=37.11 Aligned_cols=33 Identities=24% Similarity=0.143 Sum_probs=26.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
++-++.|.|||-+++--+...+..|+.|.++..
T Consensus 10 ~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 10 FLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 678999999998876666656678988877666
No 198
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=47.46 E-value=12 Score=37.84 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.3
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
.+-|.|||.+++-.+...+..|+.|.+|
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5889999987776666567788888876
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=46.97 E-value=16 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=20.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+..+++|+|||..+..-+-...-.|..+..++..
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6778999999976543332222335556655543
No 200
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.94 E-value=35 Score=36.08 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=12.5
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 49 ll~G~~G~GKT~la~ 63 (384)
T 2qby_B 49 LFLGLTGTGKTFVSK 63 (384)
T ss_dssp EEEECTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999997653
No 201
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=46.59 E-value=27 Score=30.45 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.1
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
..++||+|+|.+-..|...+..|+..|++ +..|.|...
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 56789999999999999999999999996 678888744
No 202
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=46.28 E-value=17 Score=31.55 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
.+++||+|+|.+-..|...+..|...|+.+.+|.|..
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4578999999999999999999999999878887763
No 203
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=46.16 E-value=77 Score=34.38 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcccc--chhhhhhhccccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 65 AFSVCREASKRVLKMRH--FDVQLIGGIALHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p--~~VQ~~~~~~L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
+..++++...+.+|-.. .++- +.+..|. ..-+++|+|||-.....+.+..-.|..|.+...
T Consensus 129 ~~~~l~~~l~~~l~~~~~~~~l~----l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 129 IKDALKESVLEMLAKKNSKTELQ----LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp HHHHHHHHHHHHHCCC---CSCC----CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHhCCcccCCCcc----eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 45566666666665432 1211 1234566 466899999997665555544455666777764
No 204
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=45.83 E-value=19 Score=35.41 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=27.4
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
..|. +.-+++|+|||..+.--+...+..|.+|..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4676 67899999999775544443445677888877543
No 205
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=45.33 E-value=8.6 Score=38.04 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=24.8
Q ss_pred eecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 99 EMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 99 em~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
-.+-|+|||.+++-.+...+..|+.|.+|=-.
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35889999988777777667788888887543
No 206
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=44.88 E-value=62 Score=36.79 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcc-CCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEec--CccccCc
Q psy2371 417 YQAILMDIKNCYI-KEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIAT--NMAGRGT 493 (816)
Q Consensus 417 ~~ai~~~i~~~~~-~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIAT--nmAGRGt 493 (816)
+.++.+.+.+... .+..+|||++|-...+.+++ ..+.++-+ .++....+.-+-.++...++|++|| .-..-|+
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~-q~~~~~~~~~~~~~~~~~~~vl~~v~gg~~~EGi 453 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKYV-ESEDSSVEDLYSAISANNKVLIGSVGKGKLAEGI 453 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEEE-CCSSCCHHHHHHHTTSSSSCEEEEESSCCSCCSS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEEE-cCCCCCHHHHHHHHHhcCCeEEEEEecceecccc
Confidence 3455555544322 23359999999999999987 23444332 2221112222222222246899998 6889999
Q ss_pred ccc
Q psy2371 494 DII 496 (816)
Q Consensus 494 DI~ 496 (816)
|++
T Consensus 454 D~~ 456 (551)
T 3crv_A 454 ELR 456 (551)
T ss_dssp CCE
T ss_pred ccc
Confidence 997
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=44.30 E-value=18 Score=38.17 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=23.1
Q ss_pred eeeecCCCCchHHHHHHHHHHH-hcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS-LSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a-L~g~~V~VvT~n 130 (816)
+.-++||+|||..+..-+-... -.|..|..++.+
T Consensus 156 ll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 7889999999976544333223 457777777654
No 208
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=43.96 E-value=44 Score=34.61 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=41.7
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.++|..-|...++.+ +..|+.+..+.|+++..+|.... ..+|+++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASML----RDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHH----HHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHH----HhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4567999999988777666554 44699999999999987766443 568999996
No 209
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=43.76 E-value=19 Score=31.76 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=31.6
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCC
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak 464 (816)
.+.+|++|+|.+-..|...+..|++.|++...|.|.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG 89 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGG 89 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecCh
Confidence 457899999999999999999999999987777665
No 210
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=43.45 E-value=45 Score=35.81 Aligned_cols=59 Identities=10% Similarity=-0.050 Sum_probs=42.8
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHh---CCCCeEEEcCCchHHH--HHHHHHcCCCccEEEecC
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKK---NNLPHSVLNAKQHKLE--AQIIAQAGHPKMITIATN 487 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~---~gi~~~vLnak~~~rE--a~ii~~Ag~~g~VtIATn 487 (816)
..|..+||.+++++-+..+++.+++ .|+++..++|.....+ ..+-.-......|+|+|-
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 3567799999999999999999988 6889999999854422 222221222357999984
No 211
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=43.24 E-value=22 Score=32.33 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=33.6
Q ss_pred ccCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 428 YIKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 428 ~~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
...++||+|+|.+-..|...+..|.+.|++ +.+|.|...
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 356789999999999999999999999996 778888744
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=42.81 E-value=44 Score=38.67 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=43.9
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.|..++|.|+|+.-|.+.++.+. ..|+.+..+.+++++++|.... ..+|+++|.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~----~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQ----NLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHHH----HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 46789999999988887776654 4699999999999988776543 468999997
No 213
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=42.68 E-value=21 Score=40.11 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=28.7
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAE 139 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e 139 (816)
+..+.-|+|||-... +.+..+.++|+|||+++|....+
T Consensus 165 ~I~G~aGsGKTt~I~-----~~~~~~~~lVlTpT~~aa~~l~~ 202 (446)
T 3vkw_A 165 LVDGVPGCGKTKEIL-----SRVNFEEDLILVPGRQAAEMIRR 202 (446)
T ss_dssp EEEECTTSCHHHHHH-----HHCCTTTCEEEESCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHH-----HHhccCCeEEEeCCHHHHHHHHH
Confidence 689999999997543 23334789999999999964333
No 214
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=42.53 E-value=50 Score=35.15 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=45.2
Q ss_pred HHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 114 AYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 114 a~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
-++....+..++|.|+|..-+...++.+ ...|+.+..+.|+++.++|.... ..+|+++|.
T Consensus 269 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 269 DLYDTLTITQAVIFCNTKRKVDWLTEKM----REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp HHHHHHTSSEEEEECSSHHHHHHHHHHH----HHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred HHHHhcCCCcEEEEEcCHHHHHHHHHHH----HhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 3335566778999999988777665544 44689999999999987766543 568999986
No 215
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=42.06 E-value=19 Score=36.47 Aligned_cols=35 Identities=9% Similarity=-0.202 Sum_probs=25.1
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
+.-+.+|+|||.++.--+.-.+-.|..|.+++|.-
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 55678899999776655554444688899987653
No 216
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=41.85 E-value=90 Score=34.40 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=62.0
Q ss_pred HHHHHHhcCeE-EEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEc-----ccHhHHHHHHHHHhC
Q psy2371 381 YEFQEIYKLET-ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTT-----SIENSELLSNILKKN 454 (816)
Q Consensus 381 ~e~~~~Y~l~v-v~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~-----si~~se~Ls~~L~~~ 454 (816)
+-+.++-++++ +..|.|-|+.|.+...+ .....+| .....+. ..|+|+-. |...++.+++-|.+.
T Consensus 223 ~~L~kl~~Ldi~~I~P~HGpi~r~~~~~i--i~~Y~~w------~~~~~~~-~~v~I~Y~S~yGnTe~mA~~ia~gl~~~ 293 (410)
T 4dik_A 223 EGAEKLSSLKIKALLPGHGLIWKKDPQRL--LNHYVSV------AKGDPKK-GKVTVIYDSMYGFVENVMKKAIDSLKEK 293 (410)
T ss_dssp HHHHHHHTSCCSEEEESSSCBBSSCHHHH--HHHHHHH------HHTCCCT-TEEEEEEECSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCEEecCCcchhhcCHHHH--HHHHHHh------hcccccc-cceeeEEecccChHHHHHHHHHHHHHhc
Confidence 44667778887 77899999888653211 1111112 1111122 24666553 456788999999999
Q ss_pred CCCeEEE---cCCchHHHHHHHHHcCCCccEEEecCccc
Q psy2371 455 NLPHSVL---NAKQHKLEAQIIAQAGHPKMITIATNMAG 490 (816)
Q Consensus 455 gi~~~vL---nak~~~rEa~ii~~Ag~~g~VtIATnmAG 490 (816)
|++..+. +... ..-.+|++...+...|+|+|---+
T Consensus 294 Gv~~~~~~~~d~~~-~~~s~i~~~i~~~~~ivlGspT~~ 331 (410)
T 4dik_A 294 GFTPVVYKFSDEER-PAISEILKDIPDSEALIFGVSTYE 331 (410)
T ss_dssp TCEEEEEEECSSCC-CCHHHHHHHSTTCSEEEEEECCTT
T ss_pred CCceEEEEeccCCC-CCHHHHHHHHHhCCeEEEEeCCcC
Confidence 9987654 3321 223467888888889999886543
No 217
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=41.80 E-value=98 Score=31.26 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHh----CCCCeEEEcCCchHHHHHHHHHcCCCccEEEec
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKK----NNLPHSVLNAKQHKLEAQIIAQAGHPKMITIAT 486 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~----~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIAT 486 (816)
.|..+||.+++.+-++...+.+++ .++.+..+.|.....+.......+ ..|+|+|
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~Iiv~T 183 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNG--INIIVAT 183 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHC--CSEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCC--CCEEEEc
Confidence 456699999999999988888775 467777787764333222111222 5799999
No 218
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=41.78 E-value=43 Score=37.12 Aligned_cols=14 Identities=14% Similarity=0.710 Sum_probs=12.2
Q ss_pred cceEEEecchhhhh
Q psy2371 200 KLNFVILDEIDSIL 213 (816)
Q Consensus 200 ~~~~~IvDEaDs~L 213 (816)
...+++|||+|.+.
T Consensus 194 ~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 194 KVDILLIDDVQFLI 207 (440)
T ss_dssp TCSEEEEECGGGGS
T ss_pred CCCEEEEeCccccc
Confidence 56799999999987
No 219
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=41.68 E-value=1e+02 Score=36.11 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=53.4
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh------cCCCEEEECCCcchhhhhhhhhccCC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS------YEADITYGTNNEFGFDYLRDNMVFNS 193 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~------y~~dI~ygT~~~l~fDyLrD~~~~~~ 193 (816)
.|..|+|.|+|..-|.+.++.+ ...|+++.++.++++..+|... -..+|++||+- + .
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L----~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-l-----~------- 500 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFL----VEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-L-----R------- 500 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHH----HHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-C-----C-------
T ss_pred cCCEEEEEECCHHHHHHHHHHH----HhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-h-----h-------
Confidence 5788999999988887666554 4568999999999998777654 25689999852 1 1
Q ss_pred CccccccceEEEecchhh
Q psy2371 194 NDRVQRKLNFVILDEIDS 211 (816)
Q Consensus 194 ~~~~~r~~~~~IvDEaDs 211 (816)
.-+....++++|+=++|.
T Consensus 501 ~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADK 518 (664)
T ss_dssp TTCCCTTEEEEEETTTTS
T ss_pred cCccCCCCCEEEEeCCcc
Confidence 112334677777766654
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.51 E-value=18 Score=38.27 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=12.3
Q ss_pred ccceEEEecchhhhh
Q psy2371 199 RKLNFVILDEIDSIL 213 (816)
Q Consensus 199 r~~~~~IvDEaDs~L 213 (816)
.+..++||||+|.|-
T Consensus 109 ~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 109 KGFKLIILDEADAMT 123 (340)
T ss_dssp CSCEEEEETTGGGSC
T ss_pred CCceEEEEeCCCCCC
Confidence 357899999999874
No 221
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.33 E-value=19 Score=37.08 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=12.3
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 46 ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 46 IISGMPGIGKTTSVH 60 (323)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECcCCCCHHHHHH
Confidence 778899999996554
No 222
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=41.32 E-value=89 Score=31.32 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEcCCchHHHHHHHHHcCCCccEEEecC
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKN----NLPHSVLNAKQHKLEAQIIAQAGHPKMITIATN 487 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~----gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATn 487 (816)
+..+||.+++.+-++.+++.+++. ++.+..+.|.....+..... . ....|+|+|.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL-A-KKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH-H-TCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh-c-CCCCEEEECH
Confidence 446999999999998888777653 88889998875433221111 1 2357889883
No 223
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=41.12 E-value=10 Score=44.87 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=34.9
Q ss_pred cchhhhhhhcccc---CCc-eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHH
Q psy2371 81 HFDVQLIGGIALH---YGN-ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAK 135 (816)
Q Consensus 81 p~~VQ~~~~~~L~---~G~-Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~ 135 (816)
+++-|..++-.+. .|. +..+.-|.|||.+..+.+. .+.+. +.|.+||.+=+.
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a--~~~~~-~~vtAP~~~a~~ 231 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS--RIAGR-AIVTAPAKASTD 231 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH--HSSSC-EEEECSSCCSCH
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH--HHHhC-cEEECCCHHHHH
Confidence 4556766664443 354 8889999999966666655 44454 688899877444
No 224
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=40.74 E-value=33 Score=31.79 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=30.7
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~ 465 (816)
..++||+|+|.+-..|...+..|+..|++ +.+|.|..
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 115 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGF 115 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCCh
Confidence 45789999999999999999999999995 88888863
No 225
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=40.56 E-value=60 Score=34.53 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=42.5
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.++|..-|...++.+. ..|+.+..+.|+++.++|.... ..+|+++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLY----HEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHH----HCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 45679999999988876665554 4689999999999987776443 568999996
No 226
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=40.44 E-value=60 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=28.5
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEE
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVL 461 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vL 461 (816)
..++||+|+|.+-..|...+..|.+.|++ +.++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l 72 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA 72 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec
Confidence 46789999999999999999999999996 4445
No 227
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=40.19 E-value=19 Score=38.90 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=27.8
Q ss_pred eeeecCCCCchHHHHHHHHHHH--hcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS--LSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a--L~g~~V~VvT~n 130 (816)
+.-++-|+|||-+++-.+...| ..|+.|++|...
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 5667999999987777776667 789999999876
No 228
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=39.95 E-value=25 Score=29.90 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=31.7
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~ 465 (816)
.+ +||+|+|.+-..|...+..|+..|+++.+|.|..
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 87 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGL 87 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccH
Confidence 35 8999999999999999999999999977887763
No 229
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=39.39 E-value=38 Score=31.37 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=33.6
Q ss_pred ccCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 428 YIKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 428 ~~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
...++||+|+|.+-..|...+..|+..|+. +.+|.|...
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 456789999999999999999999999996 778888644
No 230
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=39.16 E-value=35 Score=29.94 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=33.5
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~ 466 (816)
.+++||+|+|.+-..|...+..|+..|+...+|.|...
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 46789999999999999999999999997788888744
No 231
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=44.97 E-value=6.5 Score=37.41 Aligned_cols=54 Identities=9% Similarity=0.152 Sum_probs=39.2
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.|++..-|...++.+. ..|+.+..+.|++++.+|.... .++|+++|.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~----~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLR----EAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 45678899999877776655543 4589999999999877766543 357888874
No 232
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=37.91 E-value=28 Score=38.19 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHh-cCCcEEEEeCcHHHHH
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAK 135 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL-~g~~V~VvT~n~yLA~ 135 (816)
.++ ++-+.||+|||-.. -+++.+++ .|.+|.|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHCCCcEEEEeCCCchhH
Confidence 344 88899999999864 22333333 5788999999888864
No 233
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=37.67 E-value=61 Score=34.59 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=38.2
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC--------CCCHHHHHhh------cCCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS--------EISHSLKKKS------YEADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~--------~~~~~~r~~~------y~~dI~ygT~ 177 (816)
.+..++|.|++..-+...++.+. ..|+++..+.| +++..+|... -.++|+++|.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~----~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~ 427 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELV----KDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS 427 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHH----HTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG
T ss_pred CCCeEEEEEccHHHHHHHHHHHH----HcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC
Confidence 57889999999887776665554 44999999999 7776555433 2478999984
No 234
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.45 E-value=32 Score=33.30 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=25.1
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
..|. +.-+++|+|||..+..-+...+-.|..|.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4676 5679999999965554444334456677776643
No 235
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=37.31 E-value=58 Score=32.36 Aligned_cols=45 Identities=16% Similarity=0.402 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Q psy2371 613 YSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLES 657 (816)
Q Consensus 613 ~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~ 657 (816)
.+++..|..++..+-+..+..++-..-.+..|+-+|..|++|+.+
T Consensus 3 ~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~ 47 (193)
T 3kyp_A 3 QDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQK 47 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcC
Confidence 467888999998888888888888888888999999999999975
No 236
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=36.49 E-value=76 Score=38.51 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=40.5
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh---c-CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS---Y-EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~---y-~~dI~ygT~ 177 (816)
.|.+|+|.|.|.+-+. ++.......|+++.++.++++..++... . ...|+++|+
T Consensus 431 ~~~pvLVft~s~~~se----~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSE----LISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp HTCCEEEEESCHHHHH----HHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred cCCcEEEEECCHHHHH----HHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 5788999999977655 4555667789999999999876555432 2 357999997
No 237
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=36.43 E-value=16 Score=40.17 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=26.5
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
+.-++-|+|||-+++-.+...+..|+.|++|..
T Consensus 6 ~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 6 TFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 456788999998877777767788999988875
No 238
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=36.31 E-value=84 Score=35.30 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=44.7
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.|+|+.-|...++.+...+. -|+.+..+.++++..+|.... ..+|+++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc
Confidence 366899999999988877776665432 288999999999988776543 578999997
No 239
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=35.84 E-value=37 Score=36.19 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=11.3
Q ss_pred cceEEEecchhhhh
Q psy2371 200 KLNFVILDEIDSIL 213 (816)
Q Consensus 200 ~~~~~IvDEaDs~L 213 (816)
+.-++||||+|.+.
T Consensus 138 ~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 138 HYLLVILDEFQSML 151 (412)
T ss_dssp CEEEEEEESTHHHH
T ss_pred CeEEEEEeCHHHHh
Confidence 35688999999975
No 240
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=35.73 E-value=31 Score=33.47 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=21.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+..+++|+|||..+-.-+-...-.|..+..++.+
T Consensus 56 ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 56 YLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 7889999999976543333222235556555543
No 241
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.36 E-value=37 Score=36.64 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=36.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS 156 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~ 156 (816)
++-++||+|||...-.-+......|..+.|+=|..+ +..+.+.+|-.+..+.
T Consensus 39 ~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~~~~gg~~~~~~ 90 (392)
T 4ag6_A 39 TILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE--------YKEMCRKLGGVWINCT 90 (392)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC--------SHHHHHHTTCEEEETT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC--------HHHHHHHcCCEEEEEC
Confidence 788999999997666555545567888888888654 3456666776554443
No 242
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=35.08 E-value=79 Score=43.30 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhc------cccCCceeeecCCCCchHHHH-HHHHHHHhcCCcEEEE
Q psy2371 65 AFSVCREASKRVLKMRHFDVQLIGGI------ALHYGNISEMQTGEGKTLVAT-LAAYLNSLSGQGVHIV 127 (816)
Q Consensus 65 a~a~vrea~~R~lg~~p~~VQ~~~~~------~L~~G~Iaem~TGEGKTL~~~-Lpa~l~aL~g~~V~Vv 127 (816)
.-..+++++.+ .|+.|.+.++.-++ ....|-+..++||+|||.+.- |...++.+.|..+++.
T Consensus 890 l~~~i~~~~~~-~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~ 958 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVY 958 (2695)
T ss_dssp HHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHH-cCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEE
Confidence 34456666544 78888886544443 335677999999999997654 3434555667654433
No 243
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=35.08 E-value=31 Score=31.39 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=33.4
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
..++||+|+|.+-..|...+..|+..|+. +.+|+|...
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 46789999999999999999999999996 888988744
No 244
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=35.03 E-value=17 Score=39.14 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=25.6
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
++-.+-|+|||.+++-.++..|..|+.|++|=-.
T Consensus 6 v~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D 39 (361)
T 3pg5_A 6 FFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39 (361)
T ss_dssp BCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3446789999987777666667789999888543
No 245
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=34.17 E-value=91 Score=34.50 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=19.5
Q ss_pred ecCCC-CchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 100 MQTGE-GKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 100 m~TGE-GKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+=||+ |||-|..|...+..-.|..|.+.|
T Consensus 56 ~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~ 85 (442)
T 1o5z_A 56 HIGGTNGKGSVANMVSNILVSQGYRVGSYY 85 (442)
T ss_dssp EEECSSSHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred EEECCcCHHHHHHHHHHHHHHCCCCEEEEC
Confidence 34666 999877766655455687777655
No 246
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=34.10 E-value=33 Score=30.88 Aligned_cols=38 Identities=8% Similarity=-0.092 Sum_probs=32.7
Q ss_pred cCCCcEEEEEcccHh--HHHHHHHHHhCCCCeEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIEN--SELLSNILKKNNLPHSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~--se~Ls~~L~~~gi~~~vLnak~~ 466 (816)
.+++||+|+|.+-.. |...+..|+..|+.+.+|.|...
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 467899999999887 89999999999999888887643
No 247
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=33.90 E-value=31 Score=34.46 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=21.8
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
++-++.|.|||-.+.-.+...+ .|+.|.|+.
T Consensus 18 ~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 6678999999965544444345 777777776
No 248
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.48 E-value=1e+02 Score=34.98 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=44.5
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
.+..++|.|+|..-|...++.+...+. -|+.+..+.|+++.++|.... ..+|+++|.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 366899999999988887776665432 288999999999987776543 568999986
No 249
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=32.35 E-value=43 Score=34.45 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=26.3
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeC
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTI 129 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~ 129 (816)
+..|. +.-+++|+|||..+..-+...+.. |..|.++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45777 678999999997666555544444 666776654
No 250
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=32.22 E-value=64 Score=40.52 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=55.5
Q ss_pred CCc-eeeecCCCCchHHHHHHHHHHHhc--C-----------CcEEEEeCcH----HHHHHHHHHHHHHhhhc-CCeEEE
Q psy2371 94 YGN-ISEMQTGEGKTLVATLAAYLNSLS--G-----------QGVHIVTISD----YLAKRDAEWMSVLYNWL-GLSIGV 154 (816)
Q Consensus 94 ~G~-Iaem~TGEGKTL~~~Lpa~l~aL~--g-----------~~V~VvT~n~----yLA~Rd~e~~~~l~~~l-glsv~~ 154 (816)
.|. ++++.-|||||-+-+--.+ ..|. | ..++|||-|+ ||..|+.+.+......+ +-
T Consensus 16 ~g~~lV~AsAGSGKT~~L~~r~l-rLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~~~~~~~~~---- 90 (1180)
T 1w36_B 16 QGERLIEASAGTGKTFTIAALYL-RLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRE---- 90 (1180)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHH-HHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred CCCEEEEECCCCCHHHHHHHHHH-HHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 455 9999999999987776655 3443 2 2589999986 67778887776665432 10
Q ss_pred ecCCCCHH------------H-H-H-----hhcCCCEEEECCCcchhhhhhhhh
Q psy2371 155 NSSEISHS------------L-K-K-----KSYEADITYGTNNEFGFDYLRDNM 189 (816)
Q Consensus 155 i~~~~~~~------------~-r-~-----~~y~~dI~ygT~~~l~fDyLrD~~ 189 (816)
...++. . + . ..+ ....++|-..|+...||++-
T Consensus 91 --~~~~~~~~~L~~~~~~~~~a~~~l~~al~~~-~~a~I~TIHsFc~~iLr~~~ 141 (1180)
T 1w36_B 91 --TTDNPLYERLLEEIDDKAQAAQWLLLAERQM-DEAAVFTIHGFCQRMLNLNA 141 (1180)
T ss_dssp --CCCSHHHHHHHHHCSCHHHHHHHHHHHHHHG-GGCSEEEHHHHHHHHHHHTH
T ss_pred --CCCCHHHHHHHHhcccHHHHHHHHHHHHhCc-CCceeeeHHHHHHHHHHHhH
Confidence 000110 0 0 0 001 24567899999999998864
No 251
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=32.11 E-value=35 Score=32.90 Aligned_cols=36 Identities=28% Similarity=0.202 Sum_probs=25.7
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
..|. +.-+++|+|||..+..-+. ..|.+|..++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 4576 6789999999976555554 4677787777543
No 252
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=31.90 E-value=38 Score=35.99 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 112 LAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 112 Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
+..++....+..++|.+++..-|...++. +...|+.+..+.|+++.++|.... ..+|+++|.
T Consensus 271 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~----l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 271 LCDLYETLTITQAVIFINTRRKVDWLTEK----MHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp HHHHHHSSCCSSCEEECSCHHHHHHHHHH----HHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHH----HHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 33344555677899999998877765544 445689999999999887766543 358999987
No 253
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=31.88 E-value=34 Score=39.64 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=41.1
Q ss_pred CCcEEEEeCcHHHHHHHHHHHHHH--hhhcCCeEEEecCC--------CCHHHHHhhc------CCCEEEECC
Q psy2371 121 GQGVHIVTISDYLAKRDAEWMSVL--YNWLGLSIGVNSSE--------ISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 121 g~~V~VvT~n~yLA~Rd~e~~~~l--~~~lglsv~~i~~~--------~~~~~r~~~y------~~dI~ygT~ 177 (816)
+..++|.|+++..|...++++... +...|+++..+.|+ ++.++|.... ..+|+++|.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc
Confidence 778999999999999888877654 44558999999998 9988776543 358999986
No 254
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=31.35 E-value=1.1e+02 Score=33.51 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=41.2
Q ss_pred CCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhhc------CCCEEEECC
Q psy2371 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSY------EADITYGTN 177 (816)
Q Consensus 121 g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~y------~~dI~ygT~ 177 (816)
+.+++|.++|..-|...++.+ ...|+.+..+.|+++..+|.... .++|+++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFL----SEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHH----HHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHH----HhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 445999999988777655544 45699999999999988776543 578999996
No 255
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=31.25 E-value=89 Score=30.17 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhC-----CCCeEEEcCCchHHH-HHHHHHcCCCccEEEec
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKN-----NLPHSVLNAKQHKLE-AQIIAQAGHPKMITIAT 486 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~-----gi~~~vLnak~~~rE-a~ii~~Ag~~g~VtIAT 486 (816)
+.++||.+++.+-++.+++.+++. ++.+.++++.....+ ..... .+ ...|+|+|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~-~~~i~v~T 141 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK-KN-CPHIVVGT 141 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH-HS-CCSEEEEC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh-cC-CCCEEEeC
Confidence 347999999999999988887754 788999998744322 22222 22 24799998
No 256
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=30.82 E-value=1.3e+02 Score=35.92 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=46.0
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhh-------cCCeEEEecCCCCHHHHHhhcC-----------CCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNW-------LGLSIGVNSSEISHSLKKKSYE-----------ADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~-------lglsv~~i~~~~~~~~r~~~y~-----------~dI~ygT~ 177 (816)
.+..++|.++++.-+.+.++.+...... .|+.+..+.+++++++|..... ..|+++|+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 4667999999999998888887754332 4889999999999888876542 36999997
No 257
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=30.68 E-value=45 Score=30.38 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=32.6
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCch
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQH 466 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~ 466 (816)
..++||+|+|.+-..|...+..|.+.|++ +.+|.|...
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35789999999999999999999999996 777877643
No 258
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=30.10 E-value=36 Score=31.35 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCchH
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQHK 467 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~~ 467 (816)
.+++||+|+|.+-..|...+..|+..|++ +.+|.|....
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 46789999999999999999999999995 7888887543
No 259
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=29.96 E-value=49 Score=33.46 Aligned_cols=38 Identities=11% Similarity=-0.102 Sum_probs=26.9
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
.|. +.-+.-|+|||.+++--+.-..-.|+.|.|++|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 455 35566689999776666664456789999999864
No 260
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=29.94 E-value=41 Score=31.23 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=33.4
Q ss_pred cCCCcEEEEEccc--HhHHHHHHHHHhCCCCeEEEcCCchH
Q psy2371 429 IKEQPVLVGTTSI--ENSELLSNILKKNNLPHSVLNAKQHK 467 (816)
Q Consensus 429 ~~grpVLVft~si--~~se~Ls~~L~~~gi~~~vLnak~~~ 467 (816)
.+++||+|+|.+- ..|...+..|+..|+.+.+|.|....
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 4578999999997 68999999999999998888887443
No 261
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=29.88 E-value=2.2e+02 Score=24.72 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=36.5
Q ss_pred CCcEEEEEcc------cHhHHHHHHHHHhCCCCeEEEcCCchH-HHHHHHHHcCCCc
Q psy2371 431 EQPVLVGTTS------IENSELLSNILKKNNLPHSVLNAKQHK-LEAQIIAQAGHPK 480 (816)
Q Consensus 431 grpVLVft~s------i~~se~Ls~~L~~~gi~~~vLnak~~~-rEa~ii~~Ag~~g 480 (816)
..||.||+.+ +-.|...-+.|.+.|+++...+-..+. ...++....|...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPT 73 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSS
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCC
Confidence 3579999984 999999999999999999988765332 2234444455543
No 262
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=29.84 E-value=34 Score=37.06 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=24.9
Q ss_pred eeeecCCCCchHHHHHHHHHHH------hcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS------LSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a------L~g~~V~VvT~n 130 (816)
++-.+-|+|||.+++-.++..+ ..|+.|++|=-.
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D 152 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 5667899999987776666555 358888887553
No 263
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=29.40 E-value=50 Score=30.04 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.0
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCc
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQ 465 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~ 465 (816)
.+++||+|+|.|=..|...+..|...|+. +..|.+..
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~ 109 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGA 109 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCc
Confidence 45789999999999999999999999996 55665653
No 264
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=29.26 E-value=19 Score=33.22 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=13.1
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||.++-
T Consensus 28 ll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 28 WLYGAPGTGRMTGAR 42 (145)
T ss_dssp EEESSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 788999999998775
No 265
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=28.51 E-value=45 Score=31.82 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHh----CCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCc
Q psy2371 415 EKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK----NNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNM 488 (816)
Q Consensus 415 ~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~----~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnm 488 (816)
.+...+++.+.+....|..|+|.|.+.+.++.|-+.|-. .-+||........ ++ ..|+|+++.
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~---------~~--~PV~L~~~~ 89 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR---------GG--APVEIAWPQ 89 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSST---------TC--CSEEEECTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCC---------CC--CCEEEeCCC
Confidence 466678888888888999999999999999999999975 3578886543321 22 358888754
No 266
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=28.28 E-value=41 Score=35.69 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=23.4
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 100 m~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+|=|-|||-+++=.++..|..|+.|.+|=
T Consensus 55 GKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 55 GKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999888866665677888888774
No 267
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=27.96 E-value=21 Score=32.86 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=12.2
Q ss_pred eeeecCCCCchHHH
Q psy2371 97 ISEMQTGEGKTLVA 110 (816)
Q Consensus 97 Iaem~TGEGKTL~~ 110 (816)
+..+++|+|||..+
T Consensus 31 ll~G~~GtGKt~lA 44 (143)
T 3co5_A 31 FLTGEAGSPFETVA 44 (143)
T ss_dssp EEEEETTCCHHHHH
T ss_pred EEECCCCccHHHHH
Confidence 78899999999764
No 268
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=27.61 E-value=1.3e+02 Score=37.59 Aligned_cols=58 Identities=10% Similarity=-0.050 Sum_probs=42.9
Q ss_pred cCCCcEEEEEcccHhHHHHHHHHHh---CCCCeEEEcCCchH--HHHHHHHHcCCCccEEEec
Q psy2371 429 IKEQPVLVGTTSIENSELLSNILKK---NNLPHSVLNAKQHK--LEAQIIAQAGHPKMITIAT 486 (816)
Q Consensus 429 ~~grpVLVft~si~~se~Ls~~L~~---~gi~~~vLnak~~~--rEa~ii~~Ag~~g~VtIAT 486 (816)
..|..+||.+++++-+..+++.|++ .|+++..++|.... ++..+-.-......|+|+|
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~T 181 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 181 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEE
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEC
Confidence 4567799999999999999999998 67899999998543 2222222222235799999
No 269
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.59 E-value=57 Score=35.30 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=27.3
Q ss_pred CCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 94 YGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 94 ~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
.|+ +..+++|+|||..+.-.+...+..|..|..++.-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 566 6779999999977665555445667888888763
No 270
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=27.30 E-value=24 Score=24.56 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhccccccccC
Q psy2371 763 EHLLSLDQLRQGINLRSYAQKD 784 (816)
Q Consensus 763 ehl~~m~~Lr~~I~lr~y~Qkd 784 (816)
+|-.-|+++|+||-||+-.+--
T Consensus 5 drSKLMEqIRqGVkLr~~~ks~ 26 (31)
T 3m1f_V 5 DHSKLMEQIRQGVKLKSATKSL 26 (31)
T ss_dssp THHHHHHHHHHCCCCBCC----
T ss_pred hHHHHHHHHHhhhccccCCCCC
Confidence 4667899999999999876543
No 271
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=26.23 E-value=58 Score=31.95 Aligned_cols=39 Identities=28% Similarity=0.289 Sum_probs=26.1
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHH-hcCCcEEEEeCc
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNS-LSGQGVHIVTIS 130 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~a-L~g~~V~VvT~n 130 (816)
+..|. ..-+++|+|||..+-+-+.... ..+.++.++...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 34677 5679999999976655553333 467777766654
No 272
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=26.12 E-value=2.6e+02 Score=24.60 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCcEEEEE------cccHhHHHHHHHHHhCCCCeEEEcCCchHH-HHHHHHHcCCCc
Q psy2371 431 EQPVLVGT------TSIENSELLSNILKKNNLPHSVLNAKQHKL-EAQIIAQAGHPK 480 (816)
Q Consensus 431 grpVLVft------~si~~se~Ls~~L~~~gi~~~vLnak~~~r-Ea~ii~~Ag~~g 480 (816)
..||.||+ +++-.|...-+.|...|++....+-..+.. ..++....|.+.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~t 71 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPT 71 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCS
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCC
Confidence 35899999 588999999999999999999887654332 234444556543
No 273
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=26.10 E-value=42 Score=33.28 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=27.4
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEcCC
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKN----NLPHSVLNAK 464 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~----gi~~~vLnak 464 (816)
.|..+||.+++.+-++.+.+.+++. |+.+..+++.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKA 135 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecC
Confidence 4556999999999999998888764 6676666654
No 274
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=26.09 E-value=55 Score=32.91 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=21.3
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
|+--.||+|||.+.+..+...+-.|..|...
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 5666799999988766555444567666554
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.08 E-value=1.7e+02 Score=33.24 Aligned_cols=37 Identities=19% Similarity=0.035 Sum_probs=24.7
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+..|. ..-+.+|+|||-...+.+.+..-.|..|.+..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 34566 46689999999766555544445566777764
No 276
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=26.02 E-value=1.7e+02 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=19.0
Q ss_pred ecCCC-CchHHHHHHHHHHHhcCCcEEEEe
Q psy2371 100 MQTGE-GKTLVATLAAYLNSLSGQGVHIVT 128 (816)
Q Consensus 100 m~TGE-GKTL~~~Lpa~l~aL~g~~V~VvT 128 (816)
+=||+ |||-|..|...+..-.|..|.++|
T Consensus 53 ~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~ 82 (422)
T 1w78_A 53 TVAGTNGKGTTCRTLESILMAAGYKVGVYS 82 (422)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEeCCcChHHHHHHHHHHHHHCCCCEEEEC
Confidence 34666 999887776665555677775433
No 277
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=25.92 E-value=1e+02 Score=30.23 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=39.0
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhC-----CCCeEEEcCCchHHHHHHHHHcCCCccEEEecC
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKN-----NLPHSVLNAKQHKLEAQIIAQAGHPKMITIATN 487 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~-----gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATn 487 (816)
.+..+||.+++.+-++...+.+++. ++++.+++|.....+..- .-....|+|+|-
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT---RLKKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH---HTTSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH---hccCCCEEEECH
Confidence 4567999999999999998888763 678888988754333211 112457888883
No 278
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=25.66 E-value=1.2e+02 Score=30.82 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCHH
Q psy2371 612 SYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLES-KNIS 661 (816)
Q Consensus 612 ~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~-~~~~ 661 (816)
-..+...|..++..+-+..+.+++-..-.+..++-+|..|++|+.+ .++.
T Consensus 32 l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~FW 82 (225)
T 2e50_A 32 IEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFW 82 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccccHH
Confidence 3557778888888877777777877777778999999999999976 3443
No 279
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=25.52 E-value=1.2e+02 Score=33.30 Aligned_cols=29 Identities=34% Similarity=0.273 Sum_probs=19.9
Q ss_pred cCCC-CchHHHHHHHHHHHhcCCcEEEEeC
Q psy2371 101 QTGE-GKTLVATLAAYLNSLSGQGVHIVTI 129 (816)
Q Consensus 101 ~TGE-GKTL~~~Lpa~l~aL~g~~V~VvT~ 129 (816)
=||+ |||-|..|...+..-.|..|.+.|.
T Consensus 44 VtGTnGKtTT~~~l~~iL~~~G~~vg~~~s 73 (428)
T 1jbw_A 44 VTGTNGKGSAANAIAHVLEASGLTVGLYTS 73 (428)
T ss_dssp EECSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EECCCChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 3665 9998877766655556877776654
No 280
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=25.37 E-value=85 Score=32.72 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=38.3
Q ss_pred EEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCcc
Q psy2371 434 VLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTD 494 (816)
Q Consensus 434 VLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtD 494 (816)
|+|-+++.+.+........++|+++.+-+-...+.+.+.+..+.+...|++|+|| +-|.-
T Consensus 76 VVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~~~vv~a~N~-s~Gv~ 135 (272)
T 4f3y_A 76 YLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSANM-SVGVN 135 (272)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTTSEEEECSCC-CHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhccCCEEEECCC-CHHHH
Confidence 6666667777777777777778876664444333333444555566889999998 34443
No 281
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=25.23 E-value=3.6e+02 Score=24.41 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=37.3
Q ss_pred CcEEEEEcc------cHhHHHHHHHHHhCCC-CeEEEcCCc-hHHHHHHHHHcCCCc--cEEE
Q psy2371 432 QPVLVGTTS------IENSELLSNILKKNNL-PHSVLNAKQ-HKLEAQIIAQAGHPK--MITI 484 (816)
Q Consensus 432 rpVLVft~s------i~~se~Ls~~L~~~gi-~~~vLnak~-~~rEa~ii~~Ag~~g--~VtI 484 (816)
.||+||..+ +--|...-++|...|+ +....+-.. .+....+....|.+. +|-|
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI 82 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYL 82 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeE
Confidence 489999864 7888999999999998 566666543 333445666677654 4555
No 282
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=25.21 E-value=32 Score=37.44 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=16.5
Q ss_pred eeeecCCCCchHHHHHHHHHHH------hcCCcEEEEeC
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNS------LSGQGVHIVTI 129 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~a------L~g~~V~VvT~ 129 (816)
++-.+-|+|||.+++-.++..+ ..|+.|++|=-
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~ 154 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDL 154 (403)
T ss_dssp ECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEE
T ss_pred EEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 5667899999987776666555 46888877643
No 283
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.14 E-value=1.2e+02 Score=35.52 Aligned_cols=58 Identities=12% Similarity=-0.022 Sum_probs=44.1
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHh-----------------------------hhcCCeEEEecCCCCHHHHHhhc--
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLY-----------------------------NWLGLSIGVNSSEISHSLKKKSY-- 168 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~-----------------------------~~lglsv~~i~~~~~~~~r~~~y-- 168 (816)
.|.+++|.++++.-+...+..+.... +.+...++...+++++++|....
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 57889999999998888887776532 22334589999999988776543
Q ss_pred ----CCCEEEECC
Q psy2371 169 ----EADITYGTN 177 (816)
Q Consensus 169 ----~~dI~ygT~ 177 (816)
..+|+++|+
T Consensus 316 f~~g~~~vlvaT~ 328 (720)
T 2zj8_A 316 FRKGIIKAVVATP 328 (720)
T ss_dssp HHTTSSCEEEECS
T ss_pred HHCCCCeEEEECc
Confidence 458999997
No 284
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.99 E-value=56 Score=32.56 Aligned_cols=34 Identities=6% Similarity=-0.087 Sum_probs=26.0
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-++.|+|||.-.+-.+.-....|+.|.+++|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 5567889999966555555445678999999987
No 285
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=24.44 E-value=39 Score=36.99 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=14.5
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 76 l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 76 VDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HTTCEEEEEEEECTTSSHHHHH
T ss_pred hcCCceEEEEECCCCCCCeEee
Confidence 4565 89999999999653
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=24.36 E-value=68 Score=34.50 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=27.6
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
..|. +..++.|+|||..+.-.+...+..|..|..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3676 67799999999766655554455677788777543
No 287
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=24.26 E-value=44 Score=36.20 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=14.9
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHH
T ss_pred HCCcceeEEEeCCCCCCCceEe
Confidence 4665 89999999999765
No 288
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=24.03 E-value=53 Score=37.64 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=27.6
Q ss_pred eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCc
Q psy2371 97 ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTIS 130 (816)
Q Consensus 97 Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n 130 (816)
+.-.++|.|||.+++-.+...+-.|+.|+++...
T Consensus 331 ~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 331 MLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 6778999999988777776667789999888654
No 289
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=23.90 E-value=1.6e+02 Score=28.63 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEcCCchHH-HHHHHHHcCCCccEEEec
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKN----NLPHSVLNAKQHKL-EAQIIAQAGHPKMITIAT 486 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~----gi~~~vLnak~~~r-Ea~ii~~Ag~~g~VtIAT 486 (816)
.+..+||.+++.+-++...+.+++. ++.+..++|..... +.... ....|+|+|
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~iiv~T 153 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----NNINILVCT 153 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----TTCSEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----CCCCEEEEC
Confidence 4567999999999999988888764 47888888874322 22222 245799988
No 290
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=23.72 E-value=43 Score=37.59 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=25.7
Q ss_pred ccCCc--eeeecCCCCchHHHHHHHHHHHhc-CCcEEEEeC
Q psy2371 92 LHYGN--ISEMQTGEGKTLVATLAAYLNSLS-GQGVHIVTI 129 (816)
Q Consensus 92 L~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~-g~~V~VvT~ 129 (816)
+..|. +..+.+|.|||..++--++..+.. |..|.+++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45676 788999999997555444433344 667777664
No 291
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=23.69 E-value=67 Score=33.01 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred hhhhhhccccCCc------eeeecCCCCchHHHHHHHHHHHhcCCcEEEE
Q psy2371 84 VQLIGGIALHYGN------ISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127 (816)
Q Consensus 84 VQ~~~~~~L~~G~------Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~Vv 127 (816)
.-++|.+..+.|+ |+--.||+|||.+.+..+....-.|..|...
T Consensus 12 ~~~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f 61 (251)
T 3fgn_A 12 SGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61 (251)
T ss_dssp ----------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred chhhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3344544444443 6777899999988765554334457666554
No 292
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.55 E-value=72 Score=44.37 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhcc------ccCCceeeecCCCCchHHHHHHH-HHHHhcCCcE--EEEeC
Q psy2371 64 KAFSVCREASKRVLKMRHFDVQLIGGIA------LHYGNISEMQTGEGKTLVATLAA-YLNSLSGQGV--HIVTI 129 (816)
Q Consensus 64 ea~a~vrea~~R~lg~~p~~VQ~~~~~~------L~~G~Iaem~TGEGKTL~~~Lpa-~l~aL~g~~V--~VvT~ 129 (816)
+.-+.+++++. .+|+.|.|.++.=++- ...|-+.-++||+|||-+.-..+ .+..+.|..+ +++-|
T Consensus 872 ~l~~ai~~~~~-~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNP 945 (3245)
T 3vkg_A 872 QLRKKIQEIAK-QRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECT
T ss_pred HHHHHHHHHHH-HcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECC
Confidence 44456666654 4799999966555444 45677999999999998864332 3334456443 44444
No 293
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=23.48 E-value=1.5e+02 Score=31.30 Aligned_cols=57 Identities=18% Similarity=0.053 Sum_probs=39.4
Q ss_pred ccCCCcEEE---EEcccHhHHHHHHHHHhCCCCeEEEcCC---chHHH-HHHHHHcCCCccEEEe
Q psy2371 428 YIKEQPVLV---GTTSIENSELLSNILKKNNLPHSVLNAK---QHKLE-AQIIAQAGHPKMITIA 485 (816)
Q Consensus 428 ~~~grpVLV---ft~si~~se~Ls~~L~~~gi~~~vLnak---~~~rE-a~ii~~Ag~~g~VtIA 485 (816)
.+.|.+||+ ++.|.+.++.+.+..++.|....+-.-. ..-+. ++++ ..|.-|.|.-.
T Consensus 110 l~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~v 173 (350)
T 3rc1_A 110 LRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADML-DEGVIGEIRSF 173 (350)
T ss_dssp HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHH-HTTTTCSEEEE
T ss_pred HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHH-hcCCCCCeEEE
Confidence 346889988 6789999999999999999987654332 12222 3344 46777877543
No 294
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=23.28 E-value=43 Score=36.37 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.3
Q ss_pred eeeecCCCCchHHH
Q psy2371 97 ISEMQTGEGKTLVA 110 (816)
Q Consensus 97 Iaem~TGEGKTL~~ 110 (816)
+|-++||+|||-+.
T Consensus 82 fAYGqTGSGKTyTM 95 (349)
T 1t5c_A 82 FAYGQTASGKTYTM 95 (349)
T ss_dssp EEEESTTSSHHHHH
T ss_pred eeecCCCCCCCeEE
Confidence 89999999999654
No 295
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=23.20 E-value=1.4e+02 Score=29.83 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=37.0
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhCCCC-eEEEcCCchHHHHHHHHHcCCCccEEEec
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKNNLP-HSVLNAKQHKLEAQIIAQAGHPKMITIAT 486 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~gi~-~~vLnak~~~rEa~ii~~Ag~~g~VtIAT 486 (816)
+.++||++++.+-++.+.+.+.+.|++ +..+++.... ...|+|+|
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-----------~~~i~v~T 178 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-----------LKPLTVST 178 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-----------CCSEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-----------cCCEEEEe
Confidence 578999999999999999999888888 8888887431 34688888
No 296
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=23.11 E-value=42 Score=36.45 Aligned_cols=18 Identities=39% Similarity=0.326 Sum_probs=14.5
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 86 l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 86 LEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceeEEeecCCCCCCCEEe
Confidence 4565 89999999999653
No 297
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=22.85 E-value=42 Score=36.07 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=14.4
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCEEEEEeECCCCCCCcEEE
Confidence 4565 89999999999654
No 298
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=22.65 E-value=60 Score=35.30 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=25.8
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcH
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~ 131 (816)
..|. +.-+++|+|||..++-.+...+..|..|..++.-.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3566 66799999999655444443345677787777643
No 299
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=22.55 E-value=46 Score=36.74 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=14.5
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHH
T ss_pred hcCceeeEeeecCCCCCCCeEe
Confidence 4665 89999999999654
No 300
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=22.34 E-value=2e+02 Score=26.07 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.4
Q ss_pred eeeecCCCCchHHHH
Q psy2371 97 ISEMQTGEGKTLVAT 111 (816)
Q Consensus 97 Iaem~TGEGKTL~~~ 111 (816)
+..+++|+|||..+-
T Consensus 47 ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 47 VLIGEPGVGKTAIVE 61 (195)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 778999999997653
No 301
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=22.21 E-value=1.5e+02 Score=29.11 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=37.4
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHh----CCCCeEEEcCCchHHHH-HHHHHcCCCccEEEec
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKK----NNLPHSVLNAKQHKLEA-QIIAQAGHPKMITIAT 486 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~----~gi~~~vLnak~~~rEa-~ii~~Ag~~g~VtIAT 486 (816)
.+..+||.+++.+-++.+.+.+++ .++.+..+.+.....+. .... . ...|+|+|
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~I~v~T 159 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE-R--GVEICIAT 159 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH-H--CCSEEEEC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc-C--CCCEEEEC
Confidence 355699999999999888776654 58899989887543322 2222 2 24799988
No 302
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=22.20 E-value=54 Score=35.51 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=12.5
Q ss_pred eeeecCCCCchHHH
Q psy2371 97 ISEMQTGEGKTLVA 110 (816)
Q Consensus 97 Iaem~TGEGKTL~~ 110 (816)
+|-++||+|||-+.
T Consensus 89 fAYGqTGSGKTyTM 102 (347)
T 1f9v_A 89 FAYGQTGSGKTFTM 102 (347)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCCcEec
Confidence 89999999999664
No 303
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.00 E-value=1.4e+02 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=35.1
Q ss_pred CcEEEEE------cccHhHHHHHHHHHhCCCCeEEEcCCchHHHH-HHHHHcCCCc
Q psy2371 432 QPVLVGT------TSIENSELLSNILKKNNLPHSVLNAKQHKLEA-QIIAQAGHPK 480 (816)
Q Consensus 432 rpVLVft------~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa-~ii~~Ag~~g 480 (816)
.||+||+ +.+-.|..+...|.+.|+++..+|-..+...+ ++....|..+
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~ 72 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPT 72 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCS
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCC
Confidence 3699998 57788999999999999999988876543322 3444445443
No 304
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=21.93 E-value=31 Score=34.90 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHhhHH----------HHhcCChHHHHHHHHHHHHhccc--CCCcc-------hhhHHHHHHHHHHHHHH
Q psy2371 16 LKKYQKIVQKINELES----------VMQKLSDEELQNQTSKLKQSIHS--GETLD-------SILPKAFSVCREASKRV 76 (816)
Q Consensus 16 ~~~~~~~~~~i~~~~~----------~~~~lsd~~l~~~~~~~~~~~~~--g~~ld-------~~l~ea~a~vrea~~R~ 76 (816)
+.++..+++++.+..- .+..+|.+++++....-++.|.+ |.... ..-+.+.+++++++++.
T Consensus 70 ~~~~p~~~~~~~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~l~~~G~~~ 149 (230)
T 2y8u_A 70 AAQNPGLLQRMRDEGHQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPAYMRPPYLETNELVLQVMRDLDYRV 149 (230)
T ss_dssp HHHCHHHHHHHHHTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCBSEECCGGGCCCHHHHHHHHHTTCEE
T ss_pred HhHCHHHHHHHHHCCCEEEecccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCHHHHHHHHHcCCEE
Confidence 3344455555554332 46778999998888887777654 32211 12345667777766554
Q ss_pred hcc--------ccchhhh----hhh---ccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHH
Q psy2371 77 LKM--------RHFDVQL----IGG---IALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAK 135 (816)
Q Consensus 77 lg~--------~p~~VQ~----~~~---~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~ 135 (816)
..- .+.+-++ ..- -....|.|+-|--+...|...+||.++..|..+|.-++|.++.|..
T Consensus 150 ~~w~~d~~Dw~~~~~~~ii~~~~~~~~~~~~~~g~IiL~Hd~~~~t~~~~L~~ii~~l~~~Gy~fvtl~ell~~ 223 (230)
T 2y8u_A 150 ISASVDTKDYENQDADAIINTSFQLFLDQLDAGGNIVLAHDIHYWTVASLAERMLQEVNARGLIATTVGDCLGD 223 (230)
T ss_dssp ECCSEECCGGGCCSTTHHHHTHHHHHHHHHHTTCCEEEECTTSHHHHHTHHHHHHHHHHHTTCEEECHHHHTTC
T ss_pred EEecCCCCccCCCCHHHHHHHHHHHHHhccCCCCEEEEEECCCcchHHHHHHHHHHHHHHCCCEEEEhHHhhCc
Confidence 321 1222222 111 1124577888877655576667999989999999999998876643
No 305
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=21.53 E-value=96 Score=36.21 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=43.9
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHh--------------------------hhcCCeEEEecCCCCHHHHHhhc-----
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLY--------------------------NWLGLSIGVNSSEISHSLKKKSY----- 168 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~--------------------------~~lglsv~~i~~~~~~~~r~~~y----- 168 (816)
.+.+++|.++++.-+.+.+..+.... ..++..++...+++++++|....
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 57889999999998888887776432 22345678889999988776543
Q ss_pred -CCCEEEECC
Q psy2371 169 -EADITYGTN 177 (816)
Q Consensus 169 -~~dI~ygT~ 177 (816)
...|+++|+
T Consensus 321 g~~~vlvaT~ 330 (702)
T 2p6r_A 321 GNIKVVVATP 330 (702)
T ss_dssp TSCCEEEECS
T ss_pred CCCeEEEECc
Confidence 468999998
No 306
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=21.42 E-value=49 Score=35.95 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=14.6
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 89 l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 89 FDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HTTCCEEEEEEECTTSSHHHHH
T ss_pred hCCceeEEEeeCCCCCCCceEE
Confidence 4665 89999999999764
No 307
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=21.40 E-value=47 Score=36.24 Aligned_cols=18 Identities=33% Similarity=0.233 Sum_probs=14.4
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeecCCCCCCceEE
Confidence 4565 89999999999663
No 308
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=21.15 E-value=2.1e+02 Score=31.39 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=34.2
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecC--------CCCHHHHHhhc-------CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSS--------EISHSLKKKSY-------EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~--------~~~~~~r~~~y-------~~dI~ygT~ 177 (816)
.+..++|.|++..-|...++.+......-++.++.+.| +++.++|.... ..+|+++|.
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 460 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS 460 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc
Confidence 45789999999999998888887654333466666655 67766665432 347888875
No 309
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.04 E-value=99 Score=34.55 Aligned_cols=48 Identities=31% Similarity=0.275 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhhccccCCceeeecCCCCchHHHH
Q psy2371 62 LPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVAT 111 (816)
Q Consensus 62 l~ea~a~vrea~~R~lg~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~ 111 (816)
+.++...++|+..--+. .|---+..| +..-.|-|.-++.|+|||+.+-
T Consensus 186 l~~~k~~l~e~v~~pl~-~p~~f~~~g-~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 186 LTEQIRELREVIELPLK-NPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CHHHHHHHHHHHHHHHH-CHHHHHHHC-CCCCCEEEEESCTTSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh-CHHHHHhCC-CCCCCeEEEECCCCCcHHHHHH
Confidence 56777777776643221 222223333 2334788999999999998754
No 310
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=20.71 E-value=1.4e+02 Score=35.70 Aligned_cols=58 Identities=10% Similarity=-0.072 Sum_probs=41.1
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHh----CCCCeEEEcCCchHHHHH-HHH-HcCCCccEEEecC
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKK----NNLPHSVLNAKQHKLEAQ-IIA-QAGHPKMITIATN 487 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~----~gi~~~vLnak~~~rEa~-ii~-~Ag~~g~VtIATn 487 (816)
.|..+||.+++.+-++...+.+++ .|+++..++|.....+.. +.. -+.....|+|+|-
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 467799999999988887766654 489999999986544432 222 2333457999995
No 311
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.67 E-value=49 Score=36.60 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=14.9
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHH
T ss_pred hCCcceEEEEECCCCCCCceEe
Confidence 4665 89999999999765
No 312
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.61 E-value=3e+02 Score=24.54 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=35.1
Q ss_pred CcEEEEEcc------cHhHHHHHHHHHhCCCC---eEEEcCCchH-HHHHHHHHcCCCc
Q psy2371 432 QPVLVGTTS------IENSELLSNILKKNNLP---HSVLNAKQHK-LEAQIIAQAGHPK 480 (816)
Q Consensus 432 rpVLVft~s------i~~se~Ls~~L~~~gi~---~~vLnak~~~-rEa~ii~~Ag~~g 480 (816)
.||.||+.+ +--|...-++|...|++ ....+-..+. ....+....|.+.
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~t 74 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPT 74 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCS
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCC
Confidence 479999985 89999999999999998 6666654332 2234444556544
No 313
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=20.48 E-value=54 Score=35.60 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=14.3
Q ss_pred cCCc----eeeecCCCCchHHH
Q psy2371 93 HYGN----ISEMQTGEGKTLVA 110 (816)
Q Consensus 93 ~~G~----Iaem~TGEGKTL~~ 110 (816)
++|. +|-++||+|||-+.
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 77 LNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCcceEEEECCCCCCcceEe
Confidence 4565 89999999999653
No 314
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.42 E-value=1.6e+02 Score=34.32 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=43.8
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHh--------------------------------hhcCCeEEEecCCCCHHHHHhh
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLY--------------------------------NWLGLSIGVNSSEISHSLKKKS 167 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~--------------------------------~~lglsv~~i~~~~~~~~r~~~ 167 (816)
.|.+++|.++++.-+...+..+.... ..++..++...+++++++|...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 56789999999998888877766432 2234468899999998877654
Q ss_pred c------CCCEEEECC
Q psy2371 168 Y------EADITYGTN 177 (816)
Q Consensus 168 y------~~dI~ygT~ 177 (816)
. ...|+++|+
T Consensus 331 ~~~f~~g~~~vlvaT~ 346 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP 346 (715)
T ss_dssp HHHHHTTCSCEEEECG
T ss_pred HHHHHcCCCeEEEECh
Confidence 3 468999997
No 315
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=20.27 E-value=1.6e+02 Score=28.60 Aligned_cols=55 Identities=20% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHh---CCCCeEEEcCCchHHH-HHHHHHcCCCccEEEecC
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKK---NNLPHSVLNAKQHKLE-AQIIAQAGHPKMITIATN 487 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~---~gi~~~vLnak~~~rE-a~ii~~Ag~~g~VtIATn 487 (816)
.+..+||.+++.+-++.+.+.+++ .++....+.+.....+ ...+ . ....|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI-S--KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH-H--SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh-c--CCCCEEEECH
Confidence 456799999999999999988886 4788888887643222 1111 1 1247888883
No 316
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=20.23 E-value=1.2e+02 Score=36.93 Aligned_cols=54 Identities=24% Similarity=0.127 Sum_probs=40.0
Q ss_pred cCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEecCCCCHHHHHhh---c-CCCEEEECC
Q psy2371 120 SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS---Y-EADITYGTN 177 (816)
Q Consensus 120 ~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~~~~~~~~r~~~---y-~~dI~ygT~ 177 (816)
.|.+|+|.|.|.+-+. .+....+..|+++.++.+++...++... . ...|+++|+
T Consensus 440 ~gqpvLVft~sie~se----~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSE----LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp TTCCEEEEESSHHHHH----HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred CCCCEEEEECcHHHHH----HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 5788999999987665 4455666789999999988765554332 1 247999998
No 317
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=20.19 E-value=1.6e+02 Score=27.92 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=38.3
Q ss_pred CCCcEEEEEcccHhHHHHHHHHHhC-----CCCeEEEcCCchHHHHHHHHHcCCCccEEEecC
Q psy2371 430 KEQPVLVGTTSIENSELLSNILKKN-----NLPHSVLNAKQHKLEAQIIAQAGHPKMITIATN 487 (816)
Q Consensus 430 ~grpVLVft~si~~se~Ls~~L~~~-----gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATn 487 (816)
.+.++||.+++.+-++.+++.+++. ++.+..+++.....+.. ..-.....|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH--HHTTSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH--HhcCCCCCEEEeCH
Confidence 3457999999999999888877652 67888888875443321 11122457899884
No 318
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=20.03 E-value=1.3e+02 Score=35.81 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=36.9
Q ss_pred CCcEEEEEcccHhHHHHHHHHHhC----CCCeEEEcCCchHHHH-HHHHHcCCCccEEEec
Q psy2371 431 EQPVLVGTTSIENSELLSNILKKN----NLPHSVLNAKQHKLEA-QIIAQAGHPKMITIAT 486 (816)
Q Consensus 431 grpVLVft~si~~se~Ls~~L~~~----gi~~~vLnak~~~rEa-~ii~~Ag~~g~VtIAT 486 (816)
+.++||.|++++-++.....+++. |+++.+++|.....+. .... ....|+|+|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~Ivv~T 353 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---EDSDIIVVT 353 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH---HTCSEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh---CCCCEEEEc
Confidence 678999999999998887777664 9999999998543321 1111 135799998
No 319
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=20.01 E-value=64 Score=31.53 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=24.2
Q ss_pred cCCc--eeeecCCCCchHHHHHHHHHHHh------cCCcEEEEeCc
Q psy2371 93 HYGN--ISEMQTGEGKTLVATLAAYLNSL------SGQGVHIVTIS 130 (816)
Q Consensus 93 ~~G~--Iaem~TGEGKTL~~~Lpa~l~aL------~g~~V~VvT~n 130 (816)
..|. ..-+++|+|||..+..-+...++ .+.+|..++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 4676 67799999999776655552233 14566666543
No 320
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=20.01 E-value=1e+02 Score=38.71 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHcCCCccEEEecCccccCcccc
Q psy2371 418 QAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDII 496 (816)
Q Consensus 418 ~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~ 496 (816)
..+.+++.+.. | .|+|.|.|...+|.|.+.|...|++...++.- ++ + .++.|+|..+....|.++.
T Consensus 375 ~~L~~~~~~~~--g-rVli~~~s~~~~erL~~~L~e~gi~~~~~~~~--~~---~-----~~~~~~i~~~~L~~Gf~l~ 440 (1151)
T 2eyq_A 375 DALRKFLETFD--G-PVVFSVESEGRREALGELLARIKIAPQRIMRL--DE---A-----SDRGRYLMIGAAEHGFVDT 440 (1151)
T ss_dssp HHHHHHHTTCC--S-CCCEEESSHHHHHHHHHHHGGGTCCCEECSSG--GG---C-----CTTCCEEEECCCCSCEEET
T ss_pred HHHHHHHHHhC--C-cEEEEECCHHHHHHHHHHHHhcCCCceeccCH--hh---c-----CCCceEEEEeccccccccC
Confidence 45666665433 7 89999999999999999999999987666521 11 1 1344789999999999984
Done!