RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2371
(816 letters)
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 1293 bits (3348), Expect = 0.0
Identities = 455/831 (54%), Positives = 605/831 (72%), Gaps = 39/831 (4%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L KIFGSRN R LK+ +KIV KIN LE M+KLSDEEL+ +T++ K+ + GETLD
Sbjct: 2 LGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDD 61
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+LP+AF+V REASKRVL MRHFDVQLIGG+ LH G I+EM+TGEGKTLVATL AYLN+L+
Sbjct: 62 LLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT 121
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT++DYLAKRDAEWM LY +LGLS+GV S +S ++++Y ADITYGTNNEF
Sbjct: 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITYGTNNEF 181
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMVF+ +RVQR LN+ I+DE+DSILIDEARTPLIISG +++++ YK N
Sbjct: 182 GFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE-LYKRANK 240
Query: 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL--------- 291
I L E GDY +D ++ V LTE G EK E +L
Sbjct: 241 IVPTLEKE-----------------GDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283
Query: 292 -------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKEN 344
+ ALRAH L+ ++ YI+K+ +++IVDEFTGRLM RR+++GLHQA+EAKE
Sbjct: 284 NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEG 343
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
++IQNE QTLASITFQNYFRMY+K++GMTGTA+TEA EF+EIY L+ + +P N+ R D
Sbjct: 344 VKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRID 403
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IYKT +EK+ A++ DIK + K QPVLVGT SIE SELLS +LKK +PH+VLNAK
Sbjct: 404 HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKK 524
H+ EA+IIAQAG P +TIATNMAGRGTDI LGGN + + + + E +I K
Sbjct: 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEE-----QIAK 518
Query: 525 LKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLK 584
+K EW H++V+ +GGLH+IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL+D L++
Sbjct: 519 IKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 578
Query: 585 FFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
F SD++K +M++L + +G++IE + + +IE+AQ+K+E RNFDIRKQLLEYDD+ N+QR
Sbjct: 579 IFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQR 638
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704
K+I +RN++LE +++SE I +R DV+ L YI +++WD+ GLE LK +F L
Sbjct: 639 KVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGL 698
Query: 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEH 764
++ + + ++ ++ +IL ++ YE K + L ++ FER ++LQ +D W EH
Sbjct: 699 ELPIEEWLEEGLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREH 758
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
L ++D LRQGI LR YAQKDP +EYKRE F+LF +ML+ IK E ++ +M +
Sbjct: 759 LAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKV 809
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit. The
proteins SecA-F and SecY, not all of which are
necessary, comprise the standard prokaryotic protein
translocation apparatus. Other, specialized
translocation systems also exist but are not as broadly
distributed. This model describes SecA, an essential
member of the apparatus. This model excludes SecA2 of
the accessory secretory system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 745
Score = 993 bits (2570), Expect = 0.0
Identities = 404/799 (50%), Positives = 538/799 (67%), Gaps = 74/799 (9%)
Query: 26 INELESVMQKLSDEELQNQTSKLKQSIHS-GETLDSILPKAFSVCREASKRVLKMRHFDV 84
IN LE +KLSDEEL+ +T++ K + GETLD +LP+AF+V REASKRVL MR FDV
Sbjct: 1 INALEEDYEKLSDEELRAKTNEFKDRLQKQGETLDDLLPEAFAVVREASKRVLGMRPFDV 60
Query: 85 QLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVL 144
QLIGGIALH G I+EM+TGEGKTL ATL AYLN+L+G+GVH+VT++DYLA+RDAEWM +
Sbjct: 61 QLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQV 120
Query: 145 YNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFV 204
Y +LGLS+G+ S +S ++++Y DITYGTNNE GFDYLRDNM + ++VQR +F
Sbjct: 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFA 180
Query: 205 ILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKN 264
I+DE+DSILIDEARTPLIISG + + + Y N K L E
Sbjct: 181 IIDEVDSILIDEARTPLIISGPAEKSTEL-YLQANRFAKALEKE---------------- 223
Query: 265 TGDYIIDYETNQVFLTENGYEKYENIL----------------IKMALRAHVLYHKNKHY 308
Y +D + V LTE G +K E++L I AL+A L+ K+ Y
Sbjct: 224 -VHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282
Query: 309 IIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKK 368
I+++ +++IVDEFTGR+M+ RRW++GLHQA+EAKE +EIQNE QTLA+IT+QN+FR+Y+K
Sbjct: 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEK 342
Query: 369 ISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCY 428
+SGMTGTA+TE EF++IY LE + VP N+ RKDL D +YKT EEK++A++ +IK +
Sbjct: 343 LSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH 402
Query: 429 IKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNM 488
K QPVLVGTTS+E SELLSN+LK+ +PH+VLNAK H+ EA+IIAQAG +TIATNM
Sbjct: 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
Query: 489 AGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTE 548
AGRGTDI L ++V GGL++IGTE
Sbjct: 463 AGRGTDIKL------------------------------------EEVKELGGLYVIGTE 486
Query: 549 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIES 608
RHESRRIDNQLRGRSGRQGDPGSSRF+LSL+D+L++ F D+++ +M +L + + IES
Sbjct: 487 RHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIES 546
Query: 609 NLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILR 668
+ + ++ESAQ+++E RNFDIRKQLLEYDD+ N QR++I ER ++LES+++SE+I +
Sbjct: 547 KMVTRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILESEDLSELILQML 606
Query: 669 YDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYT 728
L + YI+ +K +EWD+ GL LK F LD + T +D +L
Sbjct: 607 ESTLDEIVDAYINEQKPSEEWDLEGLIEKLKTLFLLDGDLTPEDLENLTSEDLKELLLEK 666
Query: 729 FDKKYENKIKILNNKKF---LNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDP 785
Y+ K L +++ FER ++LQSID+ W EHL ++D LR+GI LRSY QKDP
Sbjct: 667 IRAAYDEKEAELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDP 726
Query: 786 KREYKREAFKLFHKMLNLI 804
EYK E F LF +ML I
Sbjct: 727 LIEYKNEGFNLFLEMLEDI 745
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA
helicase) [Intracellular trafficking and secretion].
Length = 822
Score = 976 bits (2525), Expect = 0.0
Identities = 428/831 (51%), Positives = 577/831 (69%), Gaps = 68/831 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
S L K+FGS N+R+LK+ +KIV +IN LE+ M+ LSDEEL+ +T++ K+ + SGE LD
Sbjct: 2 FSLLKKLFGSGNERILKRLRKIVMQINALEAEMESLSDEELKAKTNEFKERLASGE-LDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+LP+AF+V REASKRVL MRHFDVQL+GGI LH G+I+EM+TGEGKTLVATL AYLN+L+
Sbjct: 61 LLPEAFAVVREASKRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT++DYLA+RDAEWM LY +LGLS+GV + +S K+ +Y DITYGTNNE
Sbjct: 121 GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYACDITYGTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV + ++VQR LNF I+DE+DSILIDEARTPLIISG +++++ YK ++
Sbjct: 181 GFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE-LYKKVDD 239
Query: 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL--------- 291
+ +LL + D + ID ++ V LTE+G EK E +L
Sbjct: 240 LVRLLSEDED-----------------FTIDEKSKNVSLTESGLEKAEELLGIENLYDLE 282
Query: 292 -------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKEN 344
+ ALRAH+L+ ++ YI+++ +++IVDEFTGR+M+ RRW++GLHQA+EAKE
Sbjct: 283 NVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEG 342
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
+EIQ E QTLA+ITFQN FR+Y K++GMTGTA+TE EF IY L+ + +P N+ R D
Sbjct: 343 VEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPIIRLD 402
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D +YKT EEK++AI+ DIK + K QPVLVGT SIE SELLS +L+K +PH+VLNAK
Sbjct: 403 EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKK 524
H EA+IIAQAG P +TIATNMAGRGTDI LGGN +
Sbjct: 463 NHAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPE---------------------- 500
Query: 525 LKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLK 584
V+ GGLH+IGTERHESRRIDNQLRGR+GRQGDPGSSRFYLSL+D L++
Sbjct: 501 ----------FVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMR 550
Query: 585 FFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
F+SD++ +M+KL + +G++IES + + ++E AQRK+E RNFDIRKQLLEYDD+ N+QR
Sbjct: 551 RFASDRLPALMDKLGLKEGEAIESKMVTRAVERAQRKVEGRNFDIRKQLLEYDDVLNDQR 610
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704
K+I +RN+LLE+ ++SE I + DV+ L +YI + + WD+ GL LK
Sbjct: 611 KVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWDLEGLIDELKGTVHP 670
Query: 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEH 764
D+ + ++ +IL D+ Y+ K + + + FER ++LQ +D W EH
Sbjct: 671 DLPINKSDLEDEAEEELAERILKAADEAYDKK-EEVGPEAMREFERYVMLQVLDYLWREH 729
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
L ++D LR+GI+LR YAQKDP EYKREAF+LF ML IK + +K++ +
Sbjct: 730 LDAMDALREGIHLRGYAQKDPLIEYKREAFELFEDMLEDIKEDVVKRLFKV 780
>gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed.
Length = 796
Score = 954 bits (2467), Expect = 0.0
Identities = 373/834 (44%), Positives = 528/834 (63%), Gaps = 72/834 (8%)
Query: 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSIL 62
L K F + ++R LK+ +KI K+N LE +KLSDE+LQ +T + + I GE+LD +L
Sbjct: 4 ILKKWFDN-DKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLL 62
Query: 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQ 122
P+AF+V RE +KRVL +R FDVQ+IGGI LH GNI+EM+TGEGKTL ATL YLN+L+G+
Sbjct: 63 PEAFAVAREGAKRVLGLRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGK 122
Query: 123 GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGF 182
GVH+VT+++YL+ RDA M LY WLGL++G+N + +S K+ +Y DITY TN+E GF
Sbjct: 123 GVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGF 182
Query: 183 DYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242
DYLRDNMV VQR LN+ I+DE+DSILIDEARTPLIISG+ + + + +
Sbjct: 183 DYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVK 242
Query: 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL----------- 291
L+ E + + ++TGDY ID +T + LTE G K E +
Sbjct: 243 TLIKDEAEDGD-------DDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENT 295
Query: 292 -----IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLE 346
I ALRA+ + K+ Y++++ +++IVDEFTGR+M+ RR+++GLHQA+EAKE ++
Sbjct: 296 ALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVK 355
Query: 347 IQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQ 406
IQ E QTLA+IT+QN+FRMYKK+SGMTGTA+TE EF+EIY +E IT+P N+ RKD
Sbjct: 356 IQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSP 415
Query: 407 DKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466
D +Y T++ K+ A++ +IK + K QPVLVGT +IE+SE LS++L + +PH+VLNAK H
Sbjct: 416 DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNH 475
Query: 467 KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526
EA+II AG +TIATNMAGRGTDI LG
Sbjct: 476 AKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG-------------------------- 509
Query: 527 NEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFF 586
V GGL +IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL+D L++ F
Sbjct: 510 ---------VKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRF 560
Query: 587 SSDQIKIVMEKLKIPK-GKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRK 645
SD++K +++L + + IES + + +ESAQ+++E N+D RKQLL+YDD+ QR+
Sbjct: 561 GSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQRE 620
Query: 646 IICQERNK-LLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704
+I ++R + + E K++ E++ + + R Y K D WD+ L+
Sbjct: 621 VIYKQRMQVINEDKDLKEVLMPMIKRTVDRQVQMYTQGDKKD--WDLDA----LRDFIVS 674
Query: 705 DISFKIFFKK---KYTIKDFFIKILYTF-DKKYENKIKILNNKKFLN-FERNIILQSIDK 759
+ + F K + K L + Y K K L + + FE+ +IL+ +D
Sbjct: 675 AMPDEETFDFEDLKGKSPEELKKRLLDIVEDNYAEKEKQLGDPTQMLEFEKVVILRVVDS 734
Query: 760 YWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+W +H+ ++DQLRQ I LR Y Q +P EY+ E +++F +M++ I Y+ + M
Sbjct: 735 HWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFM 788
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed.
Length = 908
Score = 916 bits (2368), Expect = 0.0
Identities = 429/838 (51%), Positives = 607/838 (72%), Gaps = 50/838 (5%)
Query: 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSIL 62
LTK+FGSRN R LK K+V KIN LE+ +KL+DEEL+ +T++ ++ + +GETLD I+
Sbjct: 5 LLTKVFGSRNDRTLKGLGKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIM 64
Query: 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQ 122
+AF+ REASKRV +MRHFDVQL+GG+ L I+EM+TGEGKTL ATL AYLN+L+G+
Sbjct: 65 AEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK 124
Query: 123 GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGF 182
GVH++T++DYLA+RDAE L+ +LGL++G+N + + KK +Y ADITYGTNNEFGF
Sbjct: 125 GVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGF 184
Query: 183 DYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242
DYLRDNM F+ +RVQR L++ ++DE+DSILIDEARTPLIISG +++++ + KI IP
Sbjct: 185 DYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIP 244
Query: 243 KLLVPEIDTKNIKKNIKYTKKNT------GDYIIDYETNQVFLTENGYEKYENILIK--- 293
L I+ K++T GDY ID + QV TE G EK EN+LI+
Sbjct: 245 NL-------------IRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGM 291
Query: 294 --------------------MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAE 333
ALRAH L+ K+ YI+++N++IIVDE TGR M RRW+E
Sbjct: 292 LAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSE 351
Query: 334 GLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETIT 393
GLHQA+EAKE + IQNE QTLASITFQNYFR Y+K++GMTGTA+TEA+EFQ IY L+T+
Sbjct: 352 GLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVV 411
Query: 394 VPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKK 453
VP N+ RKD+ D +Y T +EKYQAI+ DIK+C + QPVLVGT SIE SELL+ ++ K
Sbjct: 412 VPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471
Query: 454 NNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNIS 513
+PH VLNAK H+ EA+I+AQAG +TIATNMAGRGTDI+LGGN + I+ + +N +
Sbjct: 472 EKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIEAL-ENPT 530
Query: 514 SEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSR 573
+E + K+K +W + HD+V+++GGLHI+GTERHESRRIDNQLRGR+GRQGD GSSR
Sbjct: 531 AE-----QKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585
Query: 574 FYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQL 633
FYLS++DSL++ F+SD++ +M+KL + +G++IE S +IE+AQRK+E RNFDIRKQL
Sbjct: 586 FYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQL 645
Query: 634 LEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIG 693
LE+DD+ N+QR+++ +RN+L+++++I + IK ++ DV+ + +YI + ++ WD+ G
Sbjct: 646 LEFDDVANDQRQVVYAQRNELMDAESIEDTIKNIQDDVINGVIDQYIPPQSVEELWDVPG 705
Query: 694 LELILKKEFKLDISFKIFFKKKYTIKDFFI--KILYTFDKKYENKIKILNNKKFLNFERN 751
LE L +EF L + + + K+ + + + +I+ ++ Y+ K +++ + FE+
Sbjct: 706 LEQRLHQEFMLKLPIQEWLDKEDDLHEETLRERIVTSWSDAYKAKEEMVGAQVLRQFEKA 765
Query: 752 IILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAI 809
++LQ++D W EHL ++D LRQGI+LR YAQK+PK+EYKRE+F+LF ++L +K++ I
Sbjct: 766 VMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLETLKHDVI 823
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 888 bits (2295), Expect = 0.0
Identities = 422/833 (50%), Positives = 580/833 (69%), Gaps = 38/833 (4%)
Query: 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSIL 62
L K+FGS+N+R +K+ K VQ +N E M LSDE+L+ +T++ K + GETLD +L
Sbjct: 5 LLKKLFGSKNEREVKRMLKTVQIVNAFEEQMVALSDEQLRAKTAEFKARLAKGETLDQLL 64
Query: 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQ 122
P+AF+V REA KRV+ MRHFDVQLIGG+ LH G I+EM+TGEGKTLV TLA YLN+LSG+
Sbjct: 65 PEAFAVAREAGKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK 124
Query: 123 GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGF 182
GVH+VT++DYLA+RDA WM LY +LGLS+G+ + K+ +Y ADITYGTNNEFGF
Sbjct: 125 GVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGF 184
Query: 183 DYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242
DYLRDNM F+ +D+ QR+LNF ++DE+DSILIDEARTPLIISG+ +++++ + +I IP
Sbjct: 185 DYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIP 244
Query: 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL----------- 291
+L ++I++ ++ G + ID +T QV L E G++ E +L
Sbjct: 245 RL------KQHIEE-VEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGES 297
Query: 292 ------------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQAL 339
+ LRAH L+H+N YI+++ +++++DE TGR M RR +EGLHQA+
Sbjct: 298 LYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAI 357
Query: 340 EAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKI 399
EAKENL IQ E+QTLAS TFQNYFR+Y K+SGMTGTA+TEA+EF++IY L+ + +PPNK
Sbjct: 358 EAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKP 417
Query: 400 NKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459
RKD D +Y T EEKY AI+ DIK C +PVLVGT +IE SE +SN+LKK + H
Sbjct: 418 LARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477
Query: 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKK 519
VLNAK H+ EA+IIAQAG P +TIATNMAGRGTDI+LGGN + + + +N + E
Sbjct: 478 VLNAKYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVAAL-ENPTPE---- 532
Query: 520 NKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLD 579
+I ++K +W H +VI +GGLH+I +ERHESRRIDNQLRGR+GRQGDPGSSRFYLSL+
Sbjct: 533 -QIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 591
Query: 580 DSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDI 639
DSL++ F+SD++K M+ L + G++IE + + +IE AQRK+E RNFDIRKQLLE+DD+
Sbjct: 592 DSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDV 651
Query: 640 YNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILK 699
N QRK+I RN LL ++NI E I R +VL S++I + ++WD+ GLE L
Sbjct: 652 ANEQRKVIYHMRNSLLAAENIGETIAEFREEVLNATISQHIPPQSLPEQWDVAGLEAALA 711
Query: 700 KEFKLDISFKIFFKKKYTIKDFFI--KILYTFDKKYENKIKILNNKKFLNFERNIILQSI 757
+F + + + + + + + + KIL Y K + FE+ I+L+ +
Sbjct: 712 SDFAVKLPIQQWLDEDDHLYEETLREKILEELLAAYNEKEDQAGAEALRTFEKQILLRVL 771
Query: 758 DKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIK 810
D W +HL ++D LR GI+LR YAQK+PK+EYKRE+F LF ++L+ IK + I+
Sbjct: 772 DDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIR 824
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 851 bits (2200), Expect = 0.0
Identities = 357/827 (43%), Positives = 512/827 (61%), Gaps = 88/827 (10%)
Query: 12 NQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCRE 71
++R LKKY+KIV++IN+LE M LSDEEL+ +T + K+ + SG+TLD ILP+AF+V RE
Sbjct: 10 DKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVRE 69
Query: 72 ASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131
A+KRVL MR +DVQLIG + LH GNI+EMQTGEGKTL AT+ YLN+L G+GVH++T++D
Sbjct: 70 AAKRVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVND 129
Query: 132 YLAKRDAEWMSVLYNWLGLSIGVNSSEISHSL-KKKSYEADITYGTNNEFGFDYLRDNMV 190
YLAKRDAE M +Y +LGL++G+N S+I + KK YEADI Y TN+E GFDYLRDN+
Sbjct: 130 YLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLA 189
Query: 191 FNSNDRVQRKLNFVILDEIDSILIDEARTPLIISG--EIKNNAQYFYKIINPIPKLLVPE 248
+ D+VQR LN+ I+DEIDSIL+DEA+TPLIISG +++N Y I K L +
Sbjct: 190 DSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSN---LYHIAAKFVKTLEED 246
Query: 249 IDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL----------------I 292
+D Y D E +V+LT+ G EK E+ I
Sbjct: 247 VD-----------------YEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHI 289
Query: 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQ 352
+ALRAHVL+ ++ YI+ + +I++VD FTGR++ R+ +GLHQA+EAKE +EI E +
Sbjct: 290 ILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENR 349
Query: 353 TLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKT 412
T+ASIT QN FRM+ K+SGMTGTA+TE EF E+Y +E + +P N+ R D DK++ T
Sbjct: 350 TMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVT 409
Query: 413 MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQI 472
++EKY+A++ ++K + +PVL+GT SIE SE S +L + +PH++LNAK EAQI
Sbjct: 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQI 469
Query: 473 IAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532
IA+AG +T+ATNMAGRGTDI LG V +
Sbjct: 470 IAEAGQKGAVTVATNMAGRGTDIKLG---------------EGVHEL------------- 501
Query: 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIK 592
GGL +IGTER ESRR+D QLRGRSGRQGDPGSS+F++SL+D LLK F+ ++++
Sbjct: 502 -------GGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELE 554
Query: 593 IVMEKLKI---PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQ 649
+ +KLK + + + AQR E + R+ LE DD+ N QR ++ +
Sbjct: 555 KLKKKLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYK 614
Query: 650 ERNKLLESK--NISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDIS 707
ERN+LLE ++ +I+ ++ L + +Y+ K +EW L L +I
Sbjct: 615 ERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLN-----EIL 669
Query: 708 FKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLN-FERNIILQSIDKYWIEHLL 766
F K + F ++ +K+ + K L + N F R + L++ID+ W+E +
Sbjct: 670 SNTNFPDKKEVVQFLLEE---AEKQLKEKRNKLPSATLYNQFLRKVALKAIDQNWVEQVD 726
Query: 767 SLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIM 813
+L QL++GI LR Y Q++P REY++EA + F M IK + ++ ++
Sbjct: 727 ALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLL 773
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed.
Length = 896
Score = 854 bits (2208), Expect = 0.0
Identities = 426/839 (50%), Positives = 601/839 (71%), Gaps = 42/839 (5%)
Query: 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSI 61
+ + K+FGSRN+R L++ +K V IN E MQ LS+EEL +T + K+ ++GE+LD +
Sbjct: 4 TLIKKMFGSRNERTLRRMEKSVMAINAFEPKMQALSNEELAGKTQEFKERFNNGESLDEL 63
Query: 62 LPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSG 121
L +AF+ RE S R L +RHFDVQLIGG+ LH GNI+EM+TGEGKTLVATL AYLN++SG
Sbjct: 64 LAEAFATVREVSLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG 123
Query: 122 QGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFG 181
+GVHIVT++DYLAKRD++WM +Y +LGL++GV ++SH K+++Y+ADI YGTNNE+G
Sbjct: 124 RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYG 183
Query: 182 FDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPI 241
FDYLRDNM F+ D+VQR+LNF I+DE+DSILIDEARTPLIISG +++++ + KI + I
Sbjct: 184 FDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLI 243
Query: 242 PKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK-------- 293
P+L KK + + + GDY ID + Q LT+ G+ E +L K
Sbjct: 244 PQL----------KK--QEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGE 291
Query: 294 ---------------MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQA 338
AL+AH ++H++ YI+K+N+++IVDE TGR M RRW+EGLHQA
Sbjct: 292 SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQA 351
Query: 339 LEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNK 398
+EAKE + IQNE QTLASITFQN+FRMY K+SGMTGTA+TEAYEFQ+IY LE + +P N+
Sbjct: 352 VEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNR 411
Query: 399 INKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPH 458
RKD D +Y T +K+QAI+ D++ C +++QPVLVGT SIE SE LS +LKK N+ H
Sbjct: 412 SMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKH 471
Query: 459 SVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKK 518
VLNAK H+ EAQIIA+AG P +TIATNMAGRGTDI+LGG++ + + ++ + S + K
Sbjct: 472 QVLNAKFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEK- 530
Query: 519 KNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 578
+ +K EW HD+VI++GGL IIG+ERHESRRIDNQLRGR+GRQGDPGSSRFYLSL
Sbjct: 531 ----EAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 586
Query: 579 DDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDD 638
+D+L++ F+S+++ +M +L + G+ IE +L + +IE+AQRK+E +FD+RKQLL+YD+
Sbjct: 587 EDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKLEGHHFDVRKQLLDYDN 646
Query: 639 IYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELIL 698
+ N+QR++I +R ++ + E+++++R +V+ L YI + + +WD L +L
Sbjct: 647 VANDQRQVIYTQRASIMAMTDTQEVVEMMREEVMDSLVDTYIPPQSLEDQWDPQALSDVL 706
Query: 699 KKEFKLDISFKIFFKKKYTIKDFFI--KILYTFDKKYENKIKILNNKKFLNFERNIILQS 756
EFK+ + K ++I+ I KIL + Y+ K++ + FE++IILQ+
Sbjct: 707 SDEFKIKAPVPDWIDKDHSIQPEQIKEKILALAIEHYDEKVRKVGRPVISQFEKSIILQT 766
Query: 757 IDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
+D +W EHL ++DQLRQGI+LR YAQKDPK+EYK+EAF LF ML+ +KYE I+ + ++
Sbjct: 767 LDNHWREHLAAMDQLRQGIHLRGYAQKDPKQEYKKEAFSLFTMMLDNLKYEVIRILSSV 825
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 778 bits (2011), Expect = 0.0
Identities = 338/836 (40%), Positives = 507/836 (60%), Gaps = 82/836 (9%)
Query: 3 FLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSIL 62
K+F ++ ++ +KI+++IN+LE + L+DEEL N+T++ K + +GETL+ I
Sbjct: 2 KFLKLFFFKS-TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIR 60
Query: 63 PKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQ 122
+AF+V REA+KRVL R +DVQ+IGGI L G+++EM+TGEGKT+ + YLN+L+G+
Sbjct: 61 VEAFAVAREATKRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGK 120
Query: 123 GVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGF 182
GV + T+++YLA+RDAE M ++N+LGLS+G+N + + +LK+++Y DITY ++E GF
Sbjct: 121 GVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSELGF 180
Query: 183 DYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIP 242
DYLRDNMV + ++VQR LNF ++DE+DSILIDEA+TPLIISG N++ Y +
Sbjct: 181 DYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDS-NLYLAADQFV 239
Query: 243 KLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENI------------ 290
+ L + DY ID ET + LTE G +K
Sbjct: 240 RTLKED------------------DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENS 281
Query: 291 ----LIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLE 346
I+ ALRAH + ++ YI+++ KI +VD+FTGR+M+ R ++EGL QA++AKE +E
Sbjct: 282 ELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVE 341
Query: 347 IQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQ 406
I+ ET+TLA+IT+QN+FR++KK+SGMTGTA+TE EF +IY + VP NK RKD
Sbjct: 342 IEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEP 401
Query: 407 DKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466
D I+ T K++A++ ++K + K QP+L+GT +E+SE L +L + N+PH+VLNAKQ+
Sbjct: 402 DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN 461
Query: 467 KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526
EA+IIA+AG ITIATNMAGRGTDI L
Sbjct: 462 AREAEIIAKAGQKGAITIATNMAGRGTDIKLS---------------------------- 493
Query: 527 NEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFF 586
+V+ GGL+++GT++ ESRRIDNQLRGRSGRQGD G SRF++SLDD L + F
Sbjct: 494 -------KEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRF 546
Query: 587 SS-DQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRK 645
S+ D+IK +KL I+S S ++ +AQ+KIE NFD RK +L+YDD+ QR
Sbjct: 547 SNFDKIKEAFKKL---GDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRD 603
Query: 646 IICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLD 705
+I +R+ +L + ++S +I+ + + K + + + L L
Sbjct: 604 LIYAQRDLILIADDLSHVIEKM-ISRAVEQILKNSFIILKNNTINYKELVEFLNDNLLRI 662
Query: 706 ISFKIFFK--KKYTIKDFFIKILYTFDKKYENKIKIL----NNKKFLNFERNIILQSIDK 759
FK K + Y ++ ++ ++ Y K +++ F ER IIL ++DK
Sbjct: 663 THFKFSEKDFENYHKEELAQYLIEALNEIYFKKRQVILDKIALNTFFESERYIILSALDK 722
Query: 760 YWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
YW H+ ++D+LR G+NL Y+QK+P + Y E K F+ +L I Y+ I +
Sbjct: 723 YWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNN 778
>gnl|CDD|214937 smart00957, SecA_DEAD, SecA DEAD-like domain. SecA protein binds
to the plasma membrane where it interacts with proOmpA
to support translocation of proOmpA through the
membrane. SecA protein achieves this translocation, in
association with SecY protein, in an ATP dependent
manner. This domain represents the N-terminal
ATP-dependent helicase domain, which is related to the.
Length = 380
Score = 662 bits (1711), Expect = 0.0
Identities = 222/397 (55%), Positives = 289/397 (72%), Gaps = 33/397 (8%)
Query: 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILP 63
L K+FGS+N R LK+ +KIV +IN LE M+ LSDEEL+ +T++ K+ + GE+LD +LP
Sbjct: 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLP 60
Query: 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQG 123
+AF+V REA+KRVL MRHFDVQLIGGI LH G I+EM+TGEGKTLVATL AYLN+L+G+G
Sbjct: 61 EAFAVVREAAKRVLGMRHFDVQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKG 120
Query: 124 VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFD 183
VH+VT++DYLAKRDAEWM LY +LGL++GV S +S ++ +Y ADITYGTNNEFGFD
Sbjct: 121 VHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEERRAAYAADITYGTNNEFGFD 180
Query: 184 YLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPK 243
YLRDNM F+ D+VQR LN+ I+DE+DSILIDEARTPLIISG ++ + Y +
Sbjct: 181 YLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDESSDLYHRADKFVP 240
Query: 244 LLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL------------ 291
L + DY +D ++ V LTE G EK E +L
Sbjct: 241 RLKEDE-----------------DYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIE 283
Query: 292 ----IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEI 347
+ ALRAH L+ ++ YI+++ +++IVDEFTGR+M+ RR+++GLHQA+EAKE +EI
Sbjct: 284 LLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEI 343
Query: 348 QNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQ 384
Q E QTLA+ITFQNYFRMYKK+SGMTGTA+TEA EF+
Sbjct: 344 QEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members
of this protein family are homologous to SecA and part
of the accessory Sec system. This system, including both
five core proteins for export and a variable number of
proteins for glycosylation, operates in certain
Gram-positive pathogens for the maturation and delivery
of serine-rich glycoproteins such as the cell surface
glycoprotein GspB in Streptococcus gordonii [Protein
fate, Protein and peptide secretion and trafficking].
Length = 762
Score = 661 bits (1707), Expect = 0.0
Identities = 326/822 (39%), Positives = 471/822 (57%), Gaps = 97/822 (11%)
Query: 16 LKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKR 75
LKK +KI+ KIN L+ M LSDEELQ +T++ K + GE+LD ILP+A++V REA KR
Sbjct: 6 LKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKR 65
Query: 76 VLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAK 135
VL M +DVQ++G I LH GNI+EM+TGEGKTL AT+ YLN+L+G+G +VT +DYLAK
Sbjct: 66 VLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAK 125
Query: 136 RDAEWMSVLYNWLGLSIGVNSSEIS-----HSLKKKSYEADITYGTNNEFGFDYLRDNMV 190
RDAE M +Y WLGL++ + + + K+K Y +DI Y TN+ GFDYL DN+
Sbjct: 126 RDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLA 185
Query: 191 FNSNDRVQRKLNFVILDEIDSILIDEARTPLIISG--EIKNNAQYFYKIINPIPKLLVPE 248
N + R N+VI+DE+DS+L+D A+TPL+ISG +++N Y I + + L +
Sbjct: 186 SNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSN---LYHIADTFVRTLKED 242
Query: 249 IDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL----------------I 292
+D YI + +V+LT+ G EK E I
Sbjct: 243 VD-----------------YIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHI 285
Query: 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQ 352
+ALRAH L+ +NK Y++ N +++++D TGRL++ + G+HQA+EAKE++E+ ET+
Sbjct: 286 NLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETR 345
Query: 353 TLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKT 412
+ASIT+QN F+M+ K+SGMTGT + EF E Y L + +P NK R D DKIY T
Sbjct: 346 AMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYAT 405
Query: 413 MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQI 472
+ EK A L D+K + QPVL+ T S+E SE+ S +L + +PH++LNA+ EAQI
Sbjct: 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQI 465
Query: 473 IAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLL 532
IA+AG +T+AT+MAGRGTDI LG V +
Sbjct: 466 IAEAGQKGAVTVATSMAGRGTDIKLG---------------KGVAEL------------- 497
Query: 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIK 592
GGL +IGTER E+ R+D QLRGRSGRQGDPGSS+F++SL+D L+K +S +K
Sbjct: 498 -------GGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLK 550
Query: 593 IVMEKLKIPKGKSIESNLAS----YSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIIC 648
+K + K S L +E AQR E + R+Q E+++ + QR+ I
Sbjct: 551 KYYKKYSVKDSKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIY 610
Query: 649 QERNKLLESKNISE--IIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKK-EFKLD 705
ERN+L+E + + + +I+ +F+ Y + + + IL+ ++
Sbjct: 611 AERNRLIEGSDFLDDDVDQIID-----DVFNMYAEEQDLSNKSLLK--RFILENLSYQFK 663
Query: 706 ISFKIF-FKKKYTIKDFFIKILYTFDKKYENKIKILNNKK-FLNFERNIILQSIDKYWIE 763
F K K IKDF +I DK+ K K+LNN F +FER IL++ID+ WIE
Sbjct: 664 NDPDEFDLKNKEAIKDFLKEI---ADKELSEKKKVLNNDYLFNDFERLSILKAIDENWIE 720
Query: 764 HLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIK 805
+ L QL+ + R Q++P EY +EA + + M IK
Sbjct: 721 QVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYMKKEIK 762
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed.
Length = 656
Score = 651 bits (1681), Expect = 0.0
Identities = 259/686 (37%), Positives = 372/686 (54%), Gaps = 106/686 (15%)
Query: 9 GSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETL-DSILPKAFS 67
G R ++ + + ++ + LS+E L+ ++ L+ + + + D++L +AF+
Sbjct: 31 GRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDALLAEAFA 90
Query: 68 VCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIV 127
+ REAS RVL RHFDVQL+GG+AL G ++EMQTGEGKTL ATL A +L+G VH++
Sbjct: 91 LVREASGRVLGQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVI 150
Query: 128 TISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRD 187
T++DYLA+RDAE M LY LGL++G + S ++ +Y ADITY TN E FDYLRD
Sbjct: 151 TVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRD 210
Query: 188 NMVFN-------------------SNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIK 228
+ S + R L+F I+DE DS+LIDEARTPLIIS K
Sbjct: 211 RLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAK 270
Query: 229 NNAQY-FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKY 287
+ Y+ + L DY ID ++ LTE G +
Sbjct: 271 EADEAEVYRQALELAAQLKEGE-----------------DYTIDAAEKRIELTEAGRARI 313
Query: 288 ENI----------------LIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRW 331
+ L++ AL A L+ +++HYI+++ K++IVDEFTGR+M R W
Sbjct: 314 AELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSW 373
Query: 332 AEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLET 391
+GLHQ +EAKE E+ + +TLA IT+Q +FR Y +++GMTGTA A E +Y L
Sbjct: 374 EDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPV 433
Query: 392 ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNIL 451
+ +P N+ ++R+ L D+++ T K+ A+ ++ + + +PVLVGT S+ SE LS +L
Sbjct: 434 VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALL 493
Query: 452 KKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKN 511
++ LPH VLNAKQ EA I+A+AG IT+ATNMAGRGTDI L
Sbjct: 494 REAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKL-------------- 539
Query: 512 ISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGS 571
V + GGLH+I TERH+S RID QL GR GRQGDPGS
Sbjct: 540 -EPGVAAR--------------------GGLHVILTERHDSARIDRQLAGRCGRQGDPGS 578
Query: 572 SRFYLSLDDSLLK-FFSSDQIKIVMEKLKIPK-GKSIESNLASYSIESAQRKIELRNFDI 629
LSL+D LL+ F S + I +L P+ G+++ + L AQR+ E +
Sbjct: 579 YEAILSLEDDLLQSFLGSRGLAIRRMELLGPRGGRALGALLLRR----AQRRAERLHARA 634
Query: 630 RKQLLEYDDIYNNQRKIICQERNKLL 655
R+ LL D ++ +KLL
Sbjct: 635 RRALLHAD-----------EQLDKLL 649
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed.
Length = 939
Score = 629 bits (1624), Expect = 0.0
Identities = 267/525 (50%), Positives = 366/525 (69%), Gaps = 40/525 (7%)
Query: 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGET------ 57
L + G N R LKKYQ IV +IN LE + LSD+EL+ +T++ +Q + E+
Sbjct: 2 LKLLLGDPNARKLKKYQPIVTEINLLEEEIAPLSDDELRAKTAEFRQRLDKAESDEEQRE 61
Query: 58 -LDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYL 116
LD +LP+AF+V REASKRVL MRHFDVQLIGG+ LH G I+EM+TGEGKTLVATL +YL
Sbjct: 62 ILDELLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYL 121
Query: 117 NSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGT 176
N+L+G+GVH+VT++DYLA+RDAEWM ++ +LGLS+G+ ++S +KK+Y DITY T
Sbjct: 122 NALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYAT 181
Query: 177 NNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYK 236
N+E GFDYLRDNM + ++ VQR N+ ++DE+DSILIDEARTPLIISG+++ Q Y+
Sbjct: 182 NSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVE-RPQEKYQ 240
Query: 237 IINPIPKLLVP--EIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL--- 291
+ L ID + GDY +D + V LT+ G+ K E +L
Sbjct: 241 KAAEVAAALQRKDGIDPE-------------GDYEVDEKQRNVLLTDEGFAKAEQLLGVS 287
Query: 292 ------------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQAL 339
I AL+A L+ K+ +YI++N +++IVDEFTGR+M RRW++GLHQA+
Sbjct: 288 DLFDPQDPWAHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAI 347
Query: 340 EAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKI 399
EAKE +EIQ ETQTLASIT+QN+F +Y K++GMTGTA+TE EF++ YKLE +P N+
Sbjct: 348 EAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRP 407
Query: 400 NKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459
+R+D D++YKT K++A+ + + + +PVLVGTTS+E SELLS +L++ +PH+
Sbjct: 408 RRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHN 467
Query: 460 VLNAKQHKL--EAQIIAQAGHPKMITIATNMAGRGTDIILGGNID 502
+LNAK + EA+I+AQAG +TIATNMAGRGTDIILGGN D
Sbjct: 468 LLNAKPENVEREAEIVAQAGRKGAVTIATNMAGRGTDIILGGNSD 512
Score = 232 bits (593), Expect = 2e-64
Identities = 117/282 (41%), Positives = 174/282 (61%), Gaps = 23/282 (8%)
Query: 533 HDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIK 592
HD+V+ +GGLH+IGTERHESRR+DNQLRGR+GRQGDPGS+RF+LSL+D+LL+ F D++
Sbjct: 642 HDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDRVA 701
Query: 593 IVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERN 652
+M ++ + IES + + S+E AQ+K+E +DIRKQ+ EYD++ NNQR+ I ER
Sbjct: 702 GLMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERR 761
Query: 653 KLLESKNISEIIKILRY--DVLIRLFSKYISLKKSDKEWDIIGL-----ELI-----LKK 700
++LE +++ E +++ Y + + Y++ +EWD+ L E + LK
Sbjct: 762 RVLEGRDLKE--QVIGYGEKTMDEIVEAYVNPDLPPEEWDLDQLVSKVKEFVYLLEDLKP 819
Query: 701 EFKLDISFKIFFKKKYTIKDFFIKILYT-FDKKYENKIKILNNKKFLNFERNIILQSIDK 759
E D+S + +K F + L +D K E +I + ER ILQ ID
Sbjct: 820 EDLEDLSVE-------ELKAFLHEQLRIAYDLK-EAQIDQIRPGLMREAERFFILQQIDT 871
Query: 760 YWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKML 801
W EHL S+D LR+ + LR Y QKDP EYK E +++F +M+
Sbjct: 872 LWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMM 913
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated.
Length = 870
Score = 617 bits (1594), Expect = 0.0
Identities = 270/533 (50%), Positives = 365/533 (68%), Gaps = 35/533 (6%)
Query: 12 NQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCRE 71
N+ L KYQ +V +IN LE ++ L+D EL+++T+KLK+ + +G+ L+ I+P++F++ RE
Sbjct: 8 NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTRE 67
Query: 72 ASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISD 131
AS R L +RHFDVQLIGG+ L+ G I+EM+TGEGKTLVATL AYLN+L+G+GVHIVT++D
Sbjct: 68 ASFRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVND 127
Query: 132 YLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVF 191
YLAKRD EWM +Y +LGL++G+ +S +KK+Y DITY TN+E GFDYLRDNM
Sbjct: 128 YLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMAL 187
Query: 192 NSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDT 251
+ +D VQR N+ I+DE+DSILIDEARTPLIISG+ K N Y + + +
Sbjct: 188 SLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDK-YIVADEL---------A 237
Query: 252 KNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL---------------IKMAL 296
K ++KN+ Y +D + V LTE G E IL I AL
Sbjct: 238 KYLEKNV--------HYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNAL 289
Query: 297 RAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLAS 356
+A L+ KN HYI++NN+IIIVDEFTGR+M RRW++GLHQA+EAKENL I+ ET+TLAS
Sbjct: 290 KAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLAS 349
Query: 357 ITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEK 416
IT+QN+F +Y K+SGMTGTA+TE EF++IY LE + +P ++ RKDL D IYK K
Sbjct: 350 ITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSK 409
Query: 417 YQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH--KLEAQIIA 474
++AI + + +P+L+GTT+IE SELLS +LK+ LPH +LNAK + E++I+A
Sbjct: 410 WRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVA 469
Query: 475 QAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKN 527
QAG ITIATNMAGRGTDIILGGN + +K ++ K KI +
Sbjct: 470 QAGRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQ 522
Score = 240 bits (615), Expect = 1e-67
Identities = 130/352 (36%), Positives = 198/352 (56%), Gaps = 25/352 (7%)
Query: 459 SVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKK 518
++LN+ ++ L+ ++ + K++ A+ + +SY ++ + ++K
Sbjct: 526 NILNSLKNDLKFLSLSDFENLKILNEAS---------EISIPKNSYQLSLRFLYNELLEK 576
Query: 519 KNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 578
K+++ + + V GGL++IGTERHESRRIDNQLRGR+GRQGDPGSSRF+LSL
Sbjct: 577 YKKLQEKEKK------IVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSL 630
Query: 579 DDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDD 638
+D+LL+ F D+I+ +M+ L + + +ES L S S++SAQ+K+E +D RKQL EYD
Sbjct: 631 EDNLLRIFGGDKIQNLMQTLNLDD-EPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQ 689
Query: 639 IYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELIL 698
+ N QRK I ER K+LES+++ + I + + +I I+ KS K + + LI
Sbjct: 690 VLNKQRKAIYSERRKILESQSLRDWI-LAYGEQVI---DDIITFLKSRKNPNNKFINLIN 745
Query: 699 KKEFKLDISFKIFFKKKYTIKDFFIK--ILYTFDKKYENKIKILNNKK---FLNFERNII 753
K + L + T+ +K + F Y+ K L ER+++
Sbjct: 746 KFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYDLKELYLEQIGTGLMRELERSLL 805
Query: 754 LQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIK 805
LQ IDK W EHL + LR+ I RSY QKDP EYK EAF LF M+N I+
Sbjct: 806 LQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIR 857
>gnl|CDD|219445 pfam07517, SecA_DEAD, SecA DEAD-like domain. SecA protein binds to
the plasma membrane where it interacts with proOmpA to
support translocation of proOmpA through the membrane.
SecA protein achieves this translocation, in association
with SecY protein, in an ATP dependent manner. This
domain represents the N-terminal ATP-dependent helicase
domain, which is related to the pfam00270.
Length = 381
Score = 591 bits (1525), Expect = 0.0
Identities = 208/384 (54%), Positives = 285/384 (74%), Gaps = 8/384 (2%)
Query: 4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILP 63
L K+FGS+N+R LK+ +KIV +IN LE + LSDEEL+ +T +L++ + +GETLD ILP
Sbjct: 1 LKKLFGSKNERDLKRLRKIVDQINALEEEYKALSDEELRAKTQELRKRLANGETLDDILP 60
Query: 64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQG 123
+AF++ REA+KRVL MRH+DVQLIGG+ LH G I+EM+TGEGKTL ATL AYLN+LSG+G
Sbjct: 61 EAFALVREAAKRVLGMRHYDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKG 120
Query: 124 VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFD 183
VH+VT++DYLAKRDAEWM LY +LGLS+GV +S++S ++++Y DITYGTN+E GFD
Sbjct: 121 VHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAYNCDITYGTNSELGFD 180
Query: 184 YLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPK 243
YLRDNM + D+VQR LNF I+DE+DSILIDEARTPLIISG +++ ++ + + K
Sbjct: 181 YLRDNMALSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPVEDESELYLIADALVKK 240
Query: 244 LLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENI----LIKMALRAH 299
L E + + K+ + E + + E EN+ I AL+AH
Sbjct: 241 LKKEEDEEDDEKRRNVLLT----EEGAKKEEELLLIDLLYDEWAENLELLHHINQALKAH 296
Query: 300 VLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITF 359
L+ ++ YI+++ +++IVDEFTGR+M+ RRW++GLHQA+EAKE +EI E QTLASIT+
Sbjct: 297 HLFERDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEITPENQTLASITY 356
Query: 360 QNYFRMYKKISGMTGTAETEAYEF 383
QN+FR+Y K++GMTGTA+TEA EF
Sbjct: 357 QNFFRLYPKLAGMTGTAKTEAEEF 380
>gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed.
Length = 764
Score = 541 bits (1396), Expect = 0.0
Identities = 243/674 (36%), Positives = 359/674 (53%), Gaps = 81/674 (12%)
Query: 6 KIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKA 65
++ G+ ++ + +V E E LSDEEL+ +L G++ D L +
Sbjct: 7 RLLGAPTEKNQSRSLALVTAAAEYEEEAADLSDEELRKAAGELNLD-DLGDSDD--LAEF 63
Query: 66 FSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVH 125
++ REA++R L +R FDVQL+G + L G++ EM TGEGKTL +AA +L G+ VH
Sbjct: 64 LAIAREAAERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVH 123
Query: 126 IVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYL 185
++T++DYLA+RDAEWM LY LGL++G + E + ++ +Y D+TY + NE GFD L
Sbjct: 124 VITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVL 183
Query: 186 RDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKL- 244
RD +V + D V + I+DE DS+L+DEA PL+++G A P ++
Sbjct: 184 RDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEA--------PRGEIA 235
Query: 245 -LVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL------------ 291
LV + +++ DY ID + V LT+ G K E L
Sbjct: 236 ELV-----RRLREGK--------DYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVG 282
Query: 292 -----IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLE 346
+ +AL AH L ++ HYI+++ K+ +++ GR+ + +RW +GL A+EAKE LE
Sbjct: 283 TTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLE 342
Query: 347 IQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQ 406
+ L +IT Q Y + GMTGTA + ++ Y L +PPNK N R+D
Sbjct: 343 TTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEA 402
Query: 407 DKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQH 466
D++Y T EK AI+ I + QPVLVGT + SE L+ L+ +P VLNAK
Sbjct: 403 DRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462
Query: 467 KLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLK 526
EA+IIA+AG +T++T MAGRGTDI LGG+ ++
Sbjct: 463 AEEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEAD---------------------- 500
Query: 527 NEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFF 586
D+V GGLH+IGT RH S R+DNQLRGR+GRQGDPGSS F++SL+D ++
Sbjct: 501 ------RDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAAN 554
Query: 587 SSDQIKIVMEKLKI---PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQ 643
+ EKL G+ I S A+ ++ AQR E + +I Y+ + Q
Sbjct: 555 LAG------EKLPAQPDEDGR-ITSPKAADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQ 607
Query: 644 RKIICQERNKLLES 657
R II + R +LL +
Sbjct: 608 RAIIVERRERLLRT 621
Score = 52.7 bits (127), Expect = 6e-07
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 750 RNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAI 809
R I+L +D+ W +HL L +R+ I+LR+ +++P E+ R A F + +A+
Sbjct: 653 RQIMLYHLDRGWADHLAYLADVRESIHLRALGRQNPLDEFHRMAVDAFKSLAA----DAV 708
Query: 810 KK 811
++
Sbjct: 709 ER 710
>gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2,
Actinobacterial type. Members of this family are the
SecA2 subunit of the Mycobacterial type of accessory
secretory system. This family is quite different SecA2
of the Staph/Strep type (TIGR03714).
Length = 762
Score = 515 bits (1328), Expect = e-172
Identities = 263/812 (32%), Positives = 390/812 (48%), Gaps = 140/812 (17%)
Query: 6 KIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKA 65
K GS +R K+ IV + L DEEL L S GE D +
Sbjct: 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEELTKAARDLVLS---GEAAD--AAQF 61
Query: 66 FSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVH 125
++ REA++R L MR FDVQL+G + L G++ EM TGEGKTL +AA +L G+ VH
Sbjct: 62 LAILREAAERTLGMRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVH 121
Query: 126 IVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYL 185
+VT++DYLA+RDAEWM L ++ GL++G + + + ++ +Y D+TY + NE GFD L
Sbjct: 122 VVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERRAAYACDVTYASVNEIGFDVL 181
Query: 186 RDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLL 245
RD +V + D VQ + ++DE DS+L+DEA PL+++G A
Sbjct: 182 RDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEA-------------- 227
Query: 246 VPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL-------------- 291
P ++ + ++ K Y +D + V LTE+G E L
Sbjct: 228 -PRGRITDLVRRLREDK----HYTVDEDGRNVHLTEDGARAVEAELGIDDLYSEEHVGTT 282
Query: 292 ---IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQ 348
+ +AL AH L ++ HYI+++ K+ ++D GR+ + +RW +GL A+EAKE LE+
Sbjct: 283 LVQVNVALHAHALLIRDVHYIVRDGKVALIDASRGRVAQLQRWPDGLQAAVEAKEGLEVT 342
Query: 349 NETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDK 408
+ L +IT Q Y + GMTGTA + ++ Y L +PPN N R D D+
Sbjct: 343 EGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFDEADR 402
Query: 409 IYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKL 468
+Y T EK AI+ +I + QPVLVGT + SE L+ L + +P +VLNAK
Sbjct: 403 VYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAE 462
Query: 469 EAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNE 528
EA IIA+AG +T++T MAGRGTDI LGG S E
Sbjct: 463 EAAIIAEAGDIGAVTVSTQMAGRGTDIRLGG-------------SDEAD----------- 498
Query: 529 WMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSS 588
HD+V GGLH+IGT RH + R+DNQLRGR+GRQGDPGSS F++SL+D ++
Sbjct: 499 ----HDRVAELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVV----- 549
Query: 589 DQIKIVMEKLKI---PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRK 645
+ E + G IES ++ AQR E + +I Y+ +
Sbjct: 550 -AVGGAGETVPAQPAEDG-RIESPRVQDFVDHAQRVAEGQLLEIHANTWRYN-------Q 600
Query: 646 IICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLD 705
+I Q+R+ + E R + L+ +D W
Sbjct: 601 LIAQQRDIIDE-----------RRETLLD----------TDTAWQ--------------- 624
Query: 706 ISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHL 765
++ + K ++ R I+L +D+ W EHL
Sbjct: 625 ------------------ELSERAADRAAELKKEVSEDALERAAREIMLYHLDRGWAEHL 666
Query: 766 LSLDQLRQGINLRSYAQKDPKREYKREAFKLF 797
LD +R+ I+LR+ ++ P E+ R A + F
Sbjct: 667 AYLDDVRESIHLRALGRETPLDEFHRMAVRAF 698
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 506 bits (1306), Expect = e-164
Identities = 233/566 (41%), Positives = 335/566 (59%), Gaps = 91/566 (16%)
Query: 296 LRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLA 355
L+A+ L+ K+ Y++ + K+ IVDE TGR+M+ RR+++GLHQA+EAKEN++I+ TQT A
Sbjct: 493 LKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFA 552
Query: 356 SITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEE 415
+IT QNYFRMY K++GMTGTAETEA EF +IYKL+ + +P N+ RKD +D +YKT E
Sbjct: 553 TITLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKRE 612
Query: 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ 475
KY A++ +I +PVLVGTTS+E SELLS +LK +PH+VLNAK H+ EA+I+A+
Sbjct: 613 KYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE 672
Query: 476 AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDK 535
AG P +TIATNMAGRGTDI L S EVK
Sbjct: 673 AGQPGTVTIATNMAGRGTDIKL---------------SPEVKA----------------- 700
Query: 536 VISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVM 595
+GGL IIGTERHESRR+D QLRGR+GRQGDPGSS+FY+SL+D+L++ F S++I VM
Sbjct: 701 ---AGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVM 757
Query: 596 EKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLL 655
+++ + +G+ I+ ++ S SIE AQ+K+E NF IRK+LLEYDD+ N+QR++I + R L
Sbjct: 758 DRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHAL 817
Query: 656 ESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELI-------------LKKEF 702
+ + I + YDV + K ++ ELI K
Sbjct: 818 MGERLGMDIANMIYDVCEAIVENN----KVANDYKGFKFELIRTLAMESPITEEEFNKLK 873
Query: 703 KLDISFKIF------FKKKY---------TIKDFF--------------------IKILY 727
K +++ K++ +++K IK + + ++
Sbjct: 874 KDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEEQGNMYERIVVPFTDGKRTLNVVT 933
Query: 728 TFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKR 787
+ YE + K + +FE+NI L ID+ W EHL +D+L+Q + SY QKDP
Sbjct: 934 NLKEAYETEGKEIVK----DFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLL 989
Query: 788 EYKREAFKLFHKMLNLIKYEAIKKIM 813
YK E+F+LF M++ + E I +
Sbjct: 990 IYKFESFELFKNMVDKVNREVISFLF 1015
Score = 280 bits (718), Expect = 2e-80
Identities = 131/328 (39%), Positives = 174/328 (53%), Gaps = 100/328 (30%)
Query: 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIH-------- 53
FL K+FG +++R LK+ Q IV+KI ++ LS++EL+ +T + KQ I
Sbjct: 3 EFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDA 62
Query: 54 -----------------------------------SGETLDSILPKAFSVCREASKRVLK 78
+ LD ILP+AF++ +E ++R +
Sbjct: 63 KIEELKAEAIESLDIDEREDIYAQIDKLEKEAYEILEKVLDEILPEAFAIVKETARRFAE 122
Query: 79 ---------------------------------------------MRHFDVQLIGGIALH 93
M H+DVQLIGG+ LH
Sbjct: 123 NEEIEVTATDFDRELAATKDFVTIEGDKAIWKNHWDAGGNEITWDMVHYDVQLIGGVVLH 182
Query: 94 YGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIG 153
G I+EM TGEGKTLVATL YLN+L+G GVH+VT++DYLAKRD+EWM LY + GLS+
Sbjct: 183 QGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242
Query: 154 V------NSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILD 207
NS ++K+Y ADITYGTNNEFGFDYLRDNM + D VQRK N+ I+D
Sbjct: 243 CIDKHQPNSEA-----RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVD 297
Query: 208 EIDSILIDEARTPLIISGEI-KNNAQYF 234
E+DS+LID+ARTPLIISG + K + Q F
Sbjct: 298 EVDSVLIDDARTPLIISGPVPKGDDQEF 325
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 476 bits (1227), Expect = e-154
Identities = 236/525 (44%), Positives = 328/525 (62%), Gaps = 55/525 (10%)
Query: 292 IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNET 351
I L+A+ L+ ++ Y+++N +++IVDEFTGR++ RR+++GLHQA+EAKEN++I+ ET
Sbjct: 459 ISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGET 518
Query: 352 QTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYK 411
QT+A+IT QN+FR+YKK++GMTGTAETEA EF EIYKL+ + +P NK RKD+ D +YK
Sbjct: 519 QTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYK 578
Query: 412 TMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQ 471
T EKY AI++ ++ K QPVLVGT S+E SE LS +L+ + H+VLNAKQH EA+
Sbjct: 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAKQHDREAE 638
Query: 472 IIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWML 531
I+A+AG +TIATNMAGRGTDI LG
Sbjct: 639 IVAEAGQKGAVTIATNMAGRGTDIKLG--------------------------------- 665
Query: 532 LHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQI 591
+ V GGL I+G+ERHESRRID QLRGR+GRQGDPG S FY+SL+D L++ F SD++
Sbjct: 666 --EGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRV 723
Query: 592 KIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQER 651
VM++L +G IE ++ + SIE AQ+K+E +NF IRK+LLEYDD+ N QR++I R
Sbjct: 724 ISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRR 783
Query: 652 NKLLESKNI-SEIIKILR-YDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFK 709
L + + S+I +LR Y +KK K D+ GLE + +E L + FK
Sbjct: 784 RNGLIKERLTSDIFDLLRDY--------CDTVVKKYHKALDVDGLEEQVLRE--LSVEFK 833
Query: 710 I----FFKKKYT-IKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEH 764
F ++ D F Y K + + E+ +L ID+ W EH
Sbjct: 834 PERDTFEREGVEGTADKLYNTALAF---YRRKEEAVPEDIMRQIEKYAVLSVIDQKWREH 890
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAI 809
L +D LR+GINLR+Y QKDP EYK+EA++LF +L I+ E +
Sbjct: 891 LREIDSLREGINLRAYGQKDPLLEYKQEAYRLFVDLLREIELETL 935
Score = 261 bits (668), Expect = 4e-74
Identities = 121/303 (39%), Positives = 172/303 (56%), Gaps = 57/303 (18%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHS------ 54
+ KIFGS++++ +KK Q I+ +INE+++ + LSD+ L+ + +LK +
Sbjct: 2 LKIFEKIFGSKHEKDIKKIQPIIDRINEIQASLASLSDDALREKGMELKSRVRGALEPIE 61
Query: 55 --------------------------------------GETLDSILPKAFSVCREASKR- 75
L+ ILP+ F++ +E +R
Sbjct: 62 QKKKDLEKKLDNPDISLEEAESINEELDTLAKEYEEATAAALEEILPETFALVKETCRRL 121
Query: 76 ------------VLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQG 123
M +DVQLIGGI LH G ISEM TGEGKTLV+TL +LN+L+G+G
Sbjct: 122 KGHTYQVMGREMTWDMVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRG 181
Query: 124 VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFD 183
VH+VT++DYLA+RD EWM+ ++ + GLS+GV + + +++ Y DITYGTNNEFGFD
Sbjct: 182 VHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFD 241
Query: 184 YLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPK 243
YLRDNM + VQR F I+DE+DS+LIDEARTPLIISG + N ++ I P +
Sbjct: 242 YLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKFQEIKPWIE 301
Query: 244 LLV 246
LV
Sbjct: 302 QLV 304
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 438 bits (1129), Expect = e-140
Identities = 197/529 (37%), Positives = 306/529 (57%), Gaps = 52/529 (9%)
Query: 296 LRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLA 355
LRAH+L K+ YI+++++I+I+DE TGR RR++EGLHQA+EAKE++ I+ E+QT A
Sbjct: 433 LRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFA 492
Query: 356 SITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEE 415
++T QN+FR+Y+K++GMTGTA TE+ EF+EIY L + VP K R D D+ Y T E
Sbjct: 493 TVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTERE 552
Query: 416 KYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ 475
KY AI+ +I + + K P+L+GT S+E SE LS IL++N + H+VLNAK H EA+IIA
Sbjct: 553 KYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG 612
Query: 476 AGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDK 535
AG +T+ATNMAGRGTDI KL E
Sbjct: 613 AGKLGAVTVATNMAGRGTDI----------------------------KLDEE------- 637
Query: 536 VISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVM 595
++ GGL++IGT RH+SRRID QLRGR R GDPG+++F+LS +D L++ F+S ++ ++
Sbjct: 638 AVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFASPKLNTLI 697
Query: 596 EKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLL 655
+ P+G+++ + + IE+AQ+++E RN+ IRK LEYDD+ N QR+ I RN +L
Sbjct: 698 RHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDVL 757
Query: 656 ESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKK 715
+++I + K + V + L S + + +D E + + + ++
Sbjct: 758 HAEDIFVVAKEIIEHVALMLASLILKDRHADGCSLPKLEEWLS---YSFPVKLDDQELRR 814
Query: 716 YTIKDFFI-----KILYTFDKKYENKI----KILNNKKFLNFE-----RNIILQSIDKYW 761
D ++ F K+ + + + + R++++ ID+ W
Sbjct: 815 LGDTDAIAEKIADLLIEAFQVKFSSMVAEFTEAIGEAVDAQGICNDILRSVMIMHIDEQW 874
Query: 762 IEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIK 810
HL+ +D LR + LR+ QKDP E+K E+F LF ++ I+ +K
Sbjct: 875 KIHLVDMDLLRSEVGLRTVGQKDPLIEFKHESFLLFESLIRDIRIAIVK 923
Score = 267 bits (685), Expect = 1e-76
Identities = 119/249 (47%), Positives = 168/249 (67%), Gaps = 15/249 (6%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ FL + FGS +R+LK++QK+V+K+N + LSD+EL+N+T++LKQ GE+LD
Sbjct: 2 LDFLKRFFGSSQERILKRFQKLVEKVNAYDEKFSSLSDDELRNKTAELKQRYQDGESLDK 61
Query: 61 ILPKAFSVCREASKRVL-------------KMRHFDVQLIGGIALHYGNISEMQTGEGKT 107
+LP+A+ V + +R+ M +DVQ++G IA+H G I+EMQTGEGKT
Sbjct: 62 LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKT 121
Query: 108 LVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKS 167
L A + YLN+L+G+ VH+VT++DYLA+RD EW+ + WLGL+ GV S +K+
Sbjct: 122 LTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181
Query: 168 YEADITYGTNNEFGFDYLRDN-MVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226
Y+ D+ YGT +EFGFDYLRDN + ++V R F I+DE+DSILIDEARTPLIISG
Sbjct: 182 YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILIDEARTPLIISGP 241
Query: 227 I-KNNAQYF 234
K+N YF
Sbjct: 242 GEKHNPVYF 250
>gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain. SecA protein
binds to the plasma membrane where it interacts with
proOmpA to support translocation of proOmpA through the
membrane. SecA protein achieves this translocation, in
association with SecY protein, in an ATP dependent
manner. This family is composed of two C-terminal alpha
helical subdomains: the wing and scaffold subdomains.
Length = 213
Score = 233 bits (597), Expect = 1e-71
Identities = 89/210 (42%), Positives = 132/210 (62%)
Query: 606 IESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIK 665
IES + + +IE+AQ+K+E RNFDIRK LLEYDD+ N QRK+I +RN++LE +++ EII
Sbjct: 2 IESKMVTKAIENAQKKVEGRNFDIRKNLLEYDDVMNEQRKVIYAQRNEILEGEDLKEIIL 61
Query: 666 ILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKI 725
+ DV+ + +Y K +EWD+ GLE L++ LD+ + T ++ ++
Sbjct: 62 EMIEDVIDDIVEEYAPEKSYPEEWDLEGLEEELRELLGLDLDIDEEELEGLTEEELKERL 121
Query: 726 LYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDP 785
+ + YE K L + ER+I+LQ ID+ W EHL ++D LR+GI LR Y QKDP
Sbjct: 122 IEAAKEAYEEKEAELGEELMREIERSIMLQVIDELWKEHLDAMDHLREGIGLRGYGQKDP 181
Query: 786 KREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
EYKREAF+LF +ML IK E ++ + +
Sbjct: 182 LVEYKREAFELFEEMLEDIKEEVVRYLFRV 211
>gnl|CDD|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain.
The SecA ATPase is involved in the insertion and
retraction of preproteins through the plasma membrane.
This domain has been found to cross-link to preproteins,
thought to indicate a role in preprotein binding. The
pre-protein cross-linking domain is comprised of two sub
domains that are inserted within the ATPase domain.
Length = 114
Score = 121 bits (306), Expect = 2e-32
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 32/123 (26%)
Query: 234 FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK 293
YK + + L KK+ DY +D ++ QV LTE G EK E +L
Sbjct: 8 LYKRADELVPTL----------------KKDEEDYEVDEKSRQVALTEEGIEKAEKLLGI 51
Query: 294 M----------------ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQ 337
ALRAH L+ ++ YI+++ +++IVDEFTGR+M RRW++GLHQ
Sbjct: 52 DNLYDPENIELVHHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQ 111
Query: 338 ALE 340
A+E
Sbjct: 112 AIE 114
>gnl|CDD|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain. The
SecA ATPase is involved in the insertion and retraction
of preproteins through the plasma membrane. This domain
has been found to cross-link to preproteins, thought to
indicate a role in preprotein binding. The pre-protein
cross-linking domain is comprised of two sub domains
that are inserted within the ATPase domain.
Length = 113
Score = 117 bits (297), Expect = 2e-31
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 33/123 (26%)
Query: 234 FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL-- 291
Y+ N + K L E D Y +D ++ QV LTE G EK E +L
Sbjct: 8 LYRRANKLVKTLKEEED-----------------YEVDEKSRQVELTEEGIEKAEKLLGI 50
Query: 292 --------------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQ 337
I ALRAH L+ ++ YI+++ +++IVDEFTGR+M RRW++GLHQ
Sbjct: 51 ENLYDPENIELLHHINQALRAHHLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQ 110
Query: 338 ALE 340
A+E
Sbjct: 111 AIE 113
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 39.9 bits (94), Expect = 0.002
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 100 MQTGEGKTLVATLAAYLNSL-----SGQGVHIV-TISDYLAKRDAEWMSVLYNWLGLSIG 153
TG GKTL L L +L Q + + T LA++ E + L+ LGL +
Sbjct: 21 APTGSGKTLAFLLPI-LQALLPKKGGPQALVLAPTRE--LAEQIYEELKKLFKILGLRVA 77
Query: 154 VNSSEISHSLKK---KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210
+ + S + K +ADI GT L D ++ ++ + L ++LDE
Sbjct: 78 LLTGGTSLKEQARKLKKGKADILVGTP-----GRLLD-LLRRGKLKLLKNLKLLVLDEAH 131
Query: 211 SIL 213
+L
Sbjct: 132 RLL 134
>gnl|CDD|233251 TIGR01054, rgy, reverse gyrase. This model describes reverse
gyrase, found in both archaeal and bacterial
thermophiles. This enzyme, a fusion of a type I
topoisomerase domain and a helicase domain, introduces
positive supercoiling to increase the melting
temperature of DNA double strands. Generally, these
gyrases are encoded as a single polypeptide. An
exception was found in Methanopyrus kandleri, where
enzyme is split within the topoisomerase domain,
yielding a heterodimer of gene products designated RgyB
and RgyA [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1171
Score = 39.0 bits (91), Expect = 0.012
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 27/187 (14%)
Query: 102 TGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLS---IGVNSSE 158
TG GKT + + G+ +I+ + L + AE +S L G+ IG S
Sbjct: 102 TGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSR 161
Query: 159 ISHSLKKKSYE------ADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSI 212
+ KK+ E DI T +L N D + K +F+ +D++D++
Sbjct: 162 LPTKEKKEFMERIENGDFDILITTTM-----FLSKNY-----DELGPKFDFIFVDDVDAL 211
Query: 213 L-----IDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGD 267
L +D+ L S E+ A +K+I KL K ++ K G
Sbjct: 212 LKASKNVDKLLKLLGFSEELIEKA---WKLIRLRLKLYRALHAKKRLELLEAIPGKKRGC 268
Query: 268 YIIDYET 274
I+ T
Sbjct: 269 LIVSSAT 275
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 35.9 bits (83), Expect = 0.042
Identities = 31/132 (23%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY--LAKRDAEWMSVLYNWLGLSIGVNSS 157
TG GKTL A L A G+G ++ + LA +W L
Sbjct: 31 APTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELA---EQWAEELKKLGPSLGLKVVG 87
Query: 158 EIS------HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDS 211
K +S + DI T D L ++ + SN ++ VILDE
Sbjct: 88 LYGGDSKREQLRKLESGKTDILVTTP-GRLLDLLENDKLSLSN------VDLVILDEAHR 140
Query: 212 ILIDEARTPLII 223
+L D +
Sbjct: 141 LL-DGGFGDQLE 151
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 35.0 bits (81), Expect = 0.052
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 100 MQTGEGKTLVATLAAYLNSLSGQGVHIVTISDY------LAKRDAEWMSVLYNWLGLSIG 153
TG GKTL A L S +G ++ ++ +A+R E +G IG
Sbjct: 7 APTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIK-VGYLIG 65
Query: 154 VNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSIL 213
S I K S + DI GT L D + +KL+ +ILDE +L
Sbjct: 66 GTS--IKQQEKLLSGKTDIVVGT-----PGRLLDELERLKLSL--KKLDLLILDEAHRLL 116
>gnl|CDD|227604 COG5279, CYK3, Uncharacterized protein involved in cytokinesis,
contains TGc (transglutaminase/protease-like) domain
[Cell division and chromosome partitioning].
Length = 521
Score = 33.0 bits (75), Expect = 0.63
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 218 RTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDT--KNIKKNIKYTKKNTGDYIIDYETN 275
RT L +S N A F +I P P ++ KK++ N
Sbjct: 63 RTNLDLSSRWDNTADNFSEIDALSPLPPSPLRSAMDNVLQSLNAKGKKSSLRLTNSTTDN 122
Query: 276 QVFLTENGYEKYENI 290
F E ++N+
Sbjct: 123 TKFDFIPIPEAFDNL 137
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 32.3 bits (74), Expect = 1.1
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 718 IKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYW 761
+K++F +L + KI N FL + + K
Sbjct: 462 MKNYFAFLLNQYSDYVNLNWKIENEHSFLKLSEEFLEKVAKKLG 505
>gnl|CDD|151315 pfam10866, DUF2704, Protein of unknown function (DUF2704). This
viral family of proteins has no known function.
Length = 169
Score = 30.9 bits (70), Expect = 1.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 403 KDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILK 452
+ +DKI K ++ + QA L D+K K ++ N+EL + K
Sbjct: 99 AEFKDKILKILQSQLQAALADLKTNTFKNI-----VLNVLNNELSDDACK 143
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 31.5 bits (72), Expect = 1.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 102 TGEGKTLVATLAAYLNSLSGQGVHIVTISD 131
TG GKT TL A L+ L+ +I+TI D
Sbjct: 267 TGSGKT--TTLYAALSELNTPERNIITIED 294
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 31.4 bits (72), Expect = 2.2
Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 27/209 (12%)
Query: 596 EKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLL----EYDDIYNN--QRKIICQ 649
+++ I L ++S I RN LL + D N + +I Q
Sbjct: 851 SFVEVRTNGLIRDFLRINLVKSPISYIRKRNDPSSSGLLVQSNNFLDSTNIYSKAEIQSQ 910
Query: 650 ERNK--------LLESKNISEIIKILRYDVL-IRLF----SKYISLKKSDKEWDI---IG 693
++ L +K ++ + D I F SKY ++K+S+ I +G
Sbjct: 911 SLSQNQGTIRTLLNRNKESQSLLILSSSDCFRIGPFNGKKSKYHNIKESNPLIPIRNSLG 970
Query: 694 LELILKKEFKLDISFKIFFKKKYTIKDFFI--KILYTFDKKYENKIKILNNKKFLNFE-- 749
+ + S+ + + + + + TF K I N K N +
Sbjct: 971 PLGTVLQIANFSSSYHLLTHNQILVTKYLQLDNLKQTFQVKVLKYYLIDENGKIYNPDPC 1030
Query: 750 RNIILQSIDKYWI-EHLLSLDQLRQGINL 777
NIIL + W H ++ I+L
Sbjct: 1031 SNIILNPFNLNWYFLHHNYCEETSTIISL 1059
>gnl|CDD|234528 TIGR04264, hyperosmo_Ebh, hyperosmolarity resistance protein Ebh,
N-terminal domain. Staphylococcal protein Ebh
(extracellular matrix-binding protein homolog) is a
giant protein, sometimes over 10,000 amino acids long as
reported. This model describes a non-repetitive
amino-terminal domain of about 2400 amino acids.
Length = 2354
Score = 31.3 bits (71), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 462 NAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISS 514
N Q++ E+ AGHP + A NM T+ GGN D+Y++ I+ ++S
Sbjct: 504 NETQNREESPESKAAGHPVFLVQAGNMGNTSTN---GGNKDTYVQPIRIQLTS 553
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 31.3 bits (72), Expect = 2.8
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 652 NKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEW-------------DIIGLELIL 698
KLL+ NI + L+ + L + + + K K+W D + L
Sbjct: 8 KKLLDQINIPDD---LQSEALESAEIEKVVVDKKSKKWEFHLKFPNILPIEDFKLFKEKL 64
Query: 699 KKEFKLDISFKIFFKKKYT--------IKDFFIKILYTFDKKYENKIKILNNKKFLNFER 750
K+ F K+ F + + D++ +I+ K +L +K
Sbjct: 65 KQSFSHIADIKVTFSIEVENITFTEELLLDYWNEIIEKAKKNSPLFKSLLKKQKVEVEGN 124
Query: 751 NIILQSIDKYWIEHL 765
+I++ ++ +HL
Sbjct: 125 KLIIKVNNEIERDHL 139
>gnl|CDD|236855 PRK11126, PRK11126,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase; Provisional.
Length = 242
Score = 30.2 bits (69), Expect = 3.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 463 AKQHKLEAQIIAQAGH 478
A+Q L +I AGH
Sbjct: 206 AQQLALPLHVIPNAGH 221
>gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of
the PI-3 kinase family [Signal transduction mechanisms /
Cell division and chromosome partitioning / Chromatin
structure and dynamics / DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 2105
Score = 30.9 bits (70), Expect = 3.7
Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 21/225 (9%)
Query: 591 IKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIY-NNQRKIICQ 649
++E LK+P SI + +I + + + + I+ NN I
Sbjct: 598 DPTLIEILKLPV-LSIVHSAIIEAIMLIKLSLGSESSQFEDLNPSFLYIFSNNSISDILF 656
Query: 650 ERNKLLESKNISEII------KILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFK 703
LE I +I+ ++ LFSK L ++ + I K
Sbjct: 657 YFQNFLEL--IVIAFFPLIRSEIIGIVLISSLFSKTWIL------LKLLLIAFISKLISA 708
Query: 704 LDISFKIFFKKKYTIKDFFIKILYTFDKKYEN--KIKILNNK-KFLNFERNIILQSIDKY 760
L K+ F + + D +Y + +L F +++L +D
Sbjct: 709 LQGELKMLA--PTLFTLFLVLVERYLDVEYSSVSFKLLLVILVYFGGNLESLVLLILDLI 766
Query: 761 WIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIK 805
+ + L++ I + +Q + A +L +++ +
Sbjct: 767 VMLVEYTELGLQESIFIERLSQFFKFKNLSENASRLLPPLMDNLS 811
>gnl|CDD|234127 TIGR03158, cas3_cyano, CRISPR-associated helicase Cas3, subtype
CYANO. CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) is a widespread family of
prokaryotic direct repeats with spacers of unique
sequence between consecutive repeats. This protein
family is a CRISPR-associated (Cas) family strictly
associated with the Cyano subtype of CRISPR/Cas locus,
found in several species of Cyanobacteria and several
archaeal species. It contains helicase motifs and
appears to represent the Cas3 protein of the Cyano
subtype of CRISPR/Cas system [Mobile and
extrachromosomal element functions, Other].
Length = 357
Score = 30.3 bits (68), Expect = 4.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 148 LGLSIGVNSSEISHSLKKKSYEADITYGTNN-EFGFDYLRDNMVFNSNDR 196
LG IG + ++++ + DI GT+ + G D+ RD ++F++ D
Sbjct: 297 LGDDIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRDWLIFSARDA 346
>gnl|CDD|187841 cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3;
Distinct diverged subfamily of Cas3 helicase domain.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Diverged DNA helicase Cas3'; signature gene for Type I
and subtype I-D.
Length = 353
Score = 30.2 bits (68), Expect = 5.0
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 148 LGLSIGVNSSEISHSLKKKSYEADITYGTNN-EFGFDYLRDNMVFNSNDR 196
LG IG + ++++ + DI GT+ + G D+ RD ++F++ D
Sbjct: 293 LGDDIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRDWLIFSARDA 342
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain.
Length = 255
Score = 29.8 bits (68), Expect = 5.5
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 614 SIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLI 673
S E A++ I + D + L E + N +K ++ N++ ++E +K + DVLI
Sbjct: 54 SEEEARKNIWM--VDRKGLLTEGREDLNPFKKPFARKTNEVKGWGTLAEAVKGAKPDVLI 111
>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
Length = 973
Score = 30.0 bits (68), Expect = 6.1
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 253 NIKKNIKYTKKNTGDYII-DYETNQ-VFLTENGYEKYENILIKMALRAHVLYHKNKHYII 310
K ++ K I+ D +F+ +N Y +E + + KN + I
Sbjct: 907 KNVKRLRKANKEYKKVILSDDSVEITIFVNDNDYLLFETLKKGDIYEFLISKSKNNKFYI 966
Query: 311 KNNKI 315
NNK
Sbjct: 967 INNKK 971
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 29.8 bits (67), Expect = 6.7
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 102 TGEGKTLVATLAAYLNSLSGQG-----VHIVTISDYLAKRDAEWMSVLYNWLGL--SIGV 154
T GKTL+ LA LSG V +V LA + E Y+ LGL +I V
Sbjct: 241 TASGKTLIGELAGIPRLLSGGKKMLFLVPLVA----LANQKYEDFKERYSKLGLKVAIRV 296
Query: 155 NSSEISHSLKK----KSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEID 210
S I + S +ADI GT G DYL + + + V++DEI
Sbjct: 297 GMSRIKTREEPVVVDTSPDADIIVGTYE--GIDYL-----LRTGKDLG-DIGTVVIDEIH 348
Query: 211 SILIDEARTP 220
+ L DE R P
Sbjct: 349 T-LEDEERGP 357
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 30.0 bits (68), Expect = 6.9
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 102 TGEGKTLVATLAAY--LNSLSGQGVHIV-TISDYLAKRDAEWMSVLYNWLGLSIGVNSSE 158
TG GKTL+A LA L G+ V+IV + LA+ E S L LG+ +G+++ +
Sbjct: 56 TGSGKTLIALLAILSTLLEGGGKVVYIVPLKA--LAEEKYEEFSRLE-ELGIRVGISTGD 112
Query: 159 ISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEAR 218
++ D+ T + D++ + +++ V++DEI + D R
Sbjct: 113 -YDLDDERLARYDVIVTTPEKL------DSLTRKRPSWI-EEVDLVVIDEIHLLG-DRTR 163
Query: 219 TPLIIS 224
P++ S
Sbjct: 164 GPVLES 169
>gnl|CDD|216004 pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain. The
Rep family helicases are composed of four structural
domains. The Rep family function as dimers. REP
helicases catalyze ATP dependent unwinding of double
stranded DNA to single stranded DNA. Some members have
large insertions near to the carboxy-terminus relative
to other members of the family.
Length = 267
Score = 29.5 bits (67), Expect = 7.2
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 31/172 (18%)
Query: 161 HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTP 220
L K+ +++ T + F LR +R+ NF ILDE+D + +
Sbjct: 66 LKLLGKAELSELNISTFHSFCLRILRKYA-----NRIGLLPNFSILDELDQLAL------ 114
Query: 221 LIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLT 280
+K K + L+ +++ K + K + + T + L
Sbjct: 115 ------LKEL---LEKDRLNLDPKLLRKLELKELISKAKNRLLSPEELQQGAATPRDKLA 165
Query: 281 ENGYEKYENILIK--------MALRAHVLYHKNK---HYIIKNNKIIIVDEF 321
Y++Y+ L + + L L + + K I+VDEF
Sbjct: 166 AEFYQEYQERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEF 217
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain.
Length = 82
Score = 27.2 bits (61), Expect = 7.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 445 ELLSNILKKNNLPHSVLNAKQHKLEAQIIAQ---AGHPKMITIATNMAGRGTDI 495
E L+ +LK+ + + L+ + E + I G K++ +AT++A RG D+
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVL-VATDVAERGLDL 53
>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of
proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the
energy from hydrolysis of NTP to transfer electron or
ion.
Length = 99
Score = 27.8 bits (62), Expect = 9.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 101 QTGEGK-TLVATLAAYLNSLSGQGVHIVTISDYL 133
+ G GK TL A LAA L+ +G ++ I DY+
Sbjct: 7 KGGVGKTTLAANLAAA---LAKRGKRVLLIDDYV 37
>gnl|CDD|214346 CHL00045, ccsA, cytochrome c biogenesis protein.
Length = 319
Score = 29.0 bits (66), Expect = 9.1
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 707 SFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYW 761
+ IF KK + F + + N +K + N+ + ++Q +D W
Sbjct: 169 NIDIFGKKNNLLNKSFSFSEIQYLNEKNNVLKNTSFFSSKNYYKYQLIQQLD-NW 222
>gnl|CDD|222985 PHA03101, PHA03101, DNA topoisomerase type I; Provisional.
Length = 314
Score = 29.2 bits (66), Expect = 9.1
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 40/135 (29%)
Query: 214 IDEARTPLIISG-EIKNNAQYFY-----------------KIINPIPKLLVPEIDTKNIK 255
+EA T LI G + K QYFY ++ N I K+ I
Sbjct: 50 YEEALTGLIFVGSDSKGRKQYFYGKLHVKNRNANRDKIFVRVHNVIKKI------NCFID 103
Query: 256 KNIKYTKKNTGDY----IIDYETNQVFLTENGYEKY--ENILIKMALRAHVLYHKNKHYI 309
KNIK KKN ++ + ET+ F G KY EN + + L KNKH
Sbjct: 104 KNIKIKKKNDVNFQLAVFLLMETS--FFIRTGKMKYLKENETVGL------LTLKNKHIT 155
Query: 310 IKNNKIIIVDEFTGR 324
I N+KI+I +F G+
Sbjct: 156 ISNDKILI--KFVGK 168
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.375
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,142,254
Number of extensions: 4384199
Number of successful extensions: 5876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5719
Number of HSP's successfully gapped: 263
Length of query: 816
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 711
Effective length of database: 6,280,432
Effective search space: 4465387152
Effective search space used: 4465387152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)