RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2371
(816 letters)
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 1287 bits (3332), Expect = 0.0
Identities = 424/834 (50%), Positives = 588/834 (70%), Gaps = 38/834 (4%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
+FGSRN R L++ +K+V IN +E M+KLSDEEL+ +T++ + + GE L++++P+AF
Sbjct: 1 VFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAF 60
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
+V REASKRV MRHFDVQL+GG+ L+ I+EM+TGEGKTL ATL AYLN+L+G+GVH+
Sbjct: 61 AVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHV 120
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLR 186
VT++DYLA+RDAE L+ +LGL++G+N + K+++Y ADITYGTNNE+GFDYLR
Sbjct: 121 VTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLR 180
Query: 187 DNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLV 246
DNM F+ +RVQRKL++ ++DE+DSILIDEARTPLIISG +++++ YK +N I L+
Sbjct: 181 DNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE-MYKRVNKIIPHLI 239
Query: 247 PEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKM------------ 294
+ +K T + G + +D ++ QV LTE G E +L+K
Sbjct: 240 RQ------EKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293
Query: 295 -----------ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKE 343
ALRAH L+ ++ YI+K+ ++IIVDE TGR M+ RRW++GLHQA+EAKE
Sbjct: 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 353
Query: 344 NLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRK 403
++IQNE QTLASITFQNYFR+Y+K++GMTGTA+TEA+EF IYKL+T+ VP N+ RK
Sbjct: 354 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 413
Query: 404 DLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNA 463
DL D +Y T EK QAI+ DIK K QPVLVGT SIE SEL+SN L K + H+VLNA
Sbjct: 414 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 473
Query: 464 KQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIK 523
K H EA I+AQAG+P +TIATNMAGRGTDI+LGG+ + + + E +I+
Sbjct: 474 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAAL------ENPTAEQIE 527
Query: 524 KLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLL 583
K+K +W + HD V+ +GGLHIIGTERHESRRIDNQLRGRSGRQGD GSSRFYLS++D+L+
Sbjct: 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587
Query: 584 KFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQ 643
+ F+SD++ +M KL + G++IE + +I +AQRK+E RNFDIRKQLLEYDD+ N+Q
Sbjct: 588 RIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQ 647
Query: 644 RKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFK 703
R+ I +RN+LL+ ++SE I +R DV YI + ++ WDI GL+ LK +F
Sbjct: 648 RRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFD 707
Query: 704 LDISFKIFFKKKYTIKDFFIK--ILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYW 761
LD+ + K+ + + ++ IL + Y+ K +++ + +FE+ ++LQ++D W
Sbjct: 708 LDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLW 767
Query: 762 IEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
EHL ++D LRQGI+LR YAQKDPK+EYKRE+F +F ML +KYE I + +
Sbjct: 768 KEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKV 821
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 1258 bits (3258), Expect = 0.0
Identities = 358/853 (41%), Positives = 526/853 (61%), Gaps = 58/853 (6%)
Query: 2 SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSI---HSGETL 58
L+K+ R++K+ +K+ + L ++KL+D EL+ +T + K+ + + ETL
Sbjct: 30 DILSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETL 89
Query: 59 DSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNS 118
D +LP+AF+V REA+ RVL R FDVQ++G ALH GN++EM+TGEGKTL L AYLN+
Sbjct: 90 DDLLPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNA 149
Query: 119 LSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNN 178
L+G GVHIVT++DYLAKRD+EWM ++ +LGL +GV + ++ ++ +Y ADITYGTNN
Sbjct: 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNN 209
Query: 179 EFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKII 238
EFGFDYLRDNM + +D VQR ++ I+DE+DSILIDEARTPLIISG + +Y
Sbjct: 210 EFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASN-WYTEF 268
Query: 239 NPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL------- 291
+ L+ + Y +D V + E G E E+ L
Sbjct: 269 ARLAPLMEKD-----------------VHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYE 311
Query: 292 ---------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAK 342
+ AL+A L+ ++K YI+++ +++IVDEFTGR++ RR+ EG+HQA+EAK
Sbjct: 312 AANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAK 371
Query: 343 ENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKR 402
E++EI+ E QTLA+IT QNYFR+Y K++GMTGTA+TEA E EIYKL +++P N R
Sbjct: 372 EHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIR 431
Query: 403 KDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLN 462
+D D IYKT E KY A++ D+ Y K QPVL+GTTS+E SE LS K +PH+VLN
Sbjct: 432 EDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLN 491
Query: 463 AKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNIS--------- 513
AK H+ EA IIA AG +T+ATNMAGRGTDI+LGGN+D +
Sbjct: 492 AKYHEQEATIIAVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEE 551
Query: 514 SEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSR 573
E +++ +K E +VI +GGL+++GTERHESRRIDNQLRGRSGRQGDPG SR
Sbjct: 552 YEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESR 611
Query: 574 FYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQL 633
FYLSL D L++ F+ ++ ++ +L +P IE+ + + +I+SAQ ++E +NF++RK +
Sbjct: 612 FYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVEQQNFEVRKNV 671
Query: 634 LEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIG 693
L+YD++ N QRK+I ER ++LE +N+ + + DV+ + ++WD+
Sbjct: 672 LKYDEVMNQQRKVIYAERRRILEGENLKDQALDMVRDVITAYVDGATG-EGYAEDWDLDA 730
Query: 694 LELILKKEFKLDISFKIFFKK----------KYTIKDFFIKILYT-FDKKYENKIKILNN 742
L LK + + I+ +K + + + +K + + +I
Sbjct: 731 LWTALKTLYPVGITADSLTRKDHEFERDDLTREELLEALLKDAERAYAAREAELEEIAGE 790
Query: 743 KKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLN 802
ERN++L ID+ W EHL +D L++GI LR+ AQ+DP EY+RE + +F ML+
Sbjct: 791 GAMRQLERNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMFMAMLD 850
Query: 803 LIKYEAIKKIMTI 815
+K E++ + +
Sbjct: 851 GMKEESVGFLFNV 863
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 1201 bits (3109), Expect = 0.0
Identities = 360/831 (43%), Positives = 523/831 (62%), Gaps = 70/831 (8%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 5 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 63
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 64 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 123
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 183
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240
GFDYLRDNMV VQR L+F ++DE+DSILIDEARTPLIISG+ + + Y N
Sbjct: 184 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK-LYVQANA 242
Query: 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL--------- 291
+ L E DY D +T V LTE G K E
Sbjct: 243 FVRTLKAE-----------------KDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 285
Query: 292 -------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKEN 344
I AL+AHV K+ Y++++ +++IVD FTGRLMK RR++EGLHQA+EAKE
Sbjct: 286 HVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEG 345
Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
LEIQNE+ TLA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N+ R D
Sbjct: 346 LEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDD 405
Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH VLNAK
Sbjct: 406 RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465
Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKK 524
H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 466 NHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 499
Query: 525 LKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLK 584
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++FYLS++D L++
Sbjct: 500 ---------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR 550
Query: 585 FFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
F +++ ++++ + I+S + S ++ES+Q+++E NFD RKQLL+YDD+ QR
Sbjct: 551 RFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQR 610
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704
++I ++R ++++S+N+ EI++ + L R + Y ++ +EW + GL ++ +
Sbjct: 611 EVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLD 670
Query: 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEH 764
+ + + + I+ KY K + ++ FE+ I+L+++D W++H
Sbjct: 671 EGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDH 730
Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
+ ++DQLRQGI+LR+YAQ +P REY+ E F +F M+ I+ E K +M
Sbjct: 731 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVMKA 781
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 1142 bits (2957), Expect = 0.0
Identities = 357/875 (40%), Positives = 511/875 (58%), Gaps = 126/875 (14%)
Query: 7 IFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAF 66
I +N+R+LKKY K+V KIN++ES ++ + EL + LK+ ++S E D L +AF
Sbjct: 2 ILFDKNKRILKKYAKMVSKINQIESDLRSKKNSELIRLSMVLKEKVNSFEDADEHLFEAF 61
Query: 67 SVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHI 126
++ REA++R L MR FDVQ++GGIALH G ++EM+TGEGKTL AT+ YLN+L G+GVH+
Sbjct: 62 ALVREAARRTLGMRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHL 121
Query: 127 VTISDYLAKRDAEWMSVLYNWLGLSIGVNSS----------------------------- 157
VT++DYLA+RDA WM +Y +LGL +GV +S
Sbjct: 122 VTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDG 181
Query: 158 ---------------------EISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDR 196
E+ +K++Y D+TYGTNNEFGFDYLRDN+V + ND+
Sbjct: 182 FNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDK 241
Query: 197 VQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKK 256
VQR + I+DE DS+LIDEARTPLIISG K + Y+ I K V +
Sbjct: 242 VQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPS-VYRRFAQIAKKFVKD-------- 292
Query: 257 NIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL----------------IKMALRAHV 300
D+ +D + + LTE G K E I+ + AL+A
Sbjct: 293 ---------KDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALH 343
Query: 301 LYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQ 360
L+ K+ Y++ N ++IIVDEFTGRL+ RR++ GLHQA+EAKE + I+ E+ T A+ITFQ
Sbjct: 344 LFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQ 403
Query: 361 NYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAI 420
NYFRMY+K++GMTGTA+TE EF ++Y +E + +P +K RKD D +++T +EKY+ I
Sbjct: 404 NYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKI 463
Query: 421 LMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPK 480
+ +I+ Y K QPVLVGTTSIE SELLS++LKK +PH VLNAK H+ EA+I+A+AG
Sbjct: 464 VEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG 523
Query: 481 MITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSG 540
M+TIATNMAGRGTDI LG V G
Sbjct: 524 MVTIATNMAGRGTDIKLGPG-----------------------------------VAELG 548
Query: 541 GLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKI 600
GL IIGTERHESRRIDNQLRGR+GRQGDPG S F+LSL+D LL+ F S+QI VM LKI
Sbjct: 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608
Query: 601 PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNI 660
+G+ I+ + S IE+ Q+K+E NF IRK L+E DD+ + QR+ + R+++L K+
Sbjct: 609 EEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLEKDY 668
Query: 661 SEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKD 720
E +K + DV+ ++ S K WDI L+ L + + ++
Sbjct: 669 DEYLKDIFEDVVSTRVEEFC----SGKNWDIESLKNSLSFFPAGLFDLDEK--QFSSSEE 722
Query: 721 FFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSY 780
+ ++Y+ K + + + + R ++L+ ID +W +L ++ +++ + LRSY
Sbjct: 723 LHDYLFNRLWEEYQRKKQEI-GEDYRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSY 781
Query: 781 AQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
QKDP E+K+E + +F +M+ I ++ +
Sbjct: 782 GQKDPIVEFKKETYYMFDEMMRRINDTIANYVLRV 816
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 990 bits (2561), Expect = 0.0
Identities = 302/943 (32%), Positives = 474/943 (50%), Gaps = 136/943 (14%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L ++F + + + + Y+++V+ +N LE+ ++KL D L +LK+ G +LD
Sbjct: 2 LGLLRRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPD--LAAAYRELKEKHEKGASLDE 59
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+LP AF++ RE++KR L MRHFDVQLIGG LH G I+EM+TGEGKTLVATLA LN+L+
Sbjct: 60 LLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALT 119
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT++DYLA+RDAEWM +Y LGLS+GV + + ++K+Y AD+TY TN+E
Sbjct: 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSEL 179
Query: 181 GFDYLRDNMVFNSNDRVQRK---LNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKI 237
GFDYLRDNM + + V R L++ I+DE+DSILIDEARTPLIISG + Y
Sbjct: 180 GFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATD-LYYK 238
Query: 238 INPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL------ 291
+ I K L + + K+ TGDY ++ + V LT G K E +L
Sbjct: 239 MAEIAKKL-----ERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF 293
Query: 292 ----------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEA 341
+ A+RA LYH+++ YI+++ ++IIVDEFTGRLM RR+ EGLHQA+EA
Sbjct: 294 SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEA 353
Query: 342 KENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINK 401
KE + I+ E QTLA+IT+QN+FR+Y+K +GMTGTA+TE EFQEIY ++ + VP N+
Sbjct: 354 KEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVI 413
Query: 402 RKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVL 461
RKD D +Y+T + K+ A++ +I Y + QPVLVGT SIE SE LS +LK+ L L
Sbjct: 414 RKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRL 473
Query: 462 NAK----------QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKN 511
+ Q E + + + ++A I GN+ + + +K+
Sbjct: 474 EMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRA 533
Query: 512 ISSEVKKK---------------------------------NKIKKLKNEWMLLHDKVIS 538
+ + + N + + + + + ++
Sbjct: 534 VHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLA 593
Query: 539 SGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKL 598
+ L G +R+E + + +G++ + + L + + LL+ + + ++
Sbjct: 594 AALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEE 653
Query: 599 KIPKGKSIE----SNLASYSIESAQRKIELRNFD---IRKQLLEYDD------------- 638
++ + S I++ R R D R + DD
Sbjct: 654 RVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAM 713
Query: 639 --------------------IYNNQRK------------------------IICQERNKL 654
I Q++ +I +R +
Sbjct: 714 LDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLI 773
Query: 655 L--ESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFF 712
L + + + E + + + L +++ + ++WD+ GL+ L F
Sbjct: 774 LLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFAE 833
Query: 713 KKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLR 772
+ ++ +++ K YE + L+ ER +IL +D W EHL +LD LR
Sbjct: 834 LRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLR 893
Query: 773 QGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
QGI LR Y QKDP +EYK EA +LF++M+ IK E K + +
Sbjct: 894 QGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRL 936
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.7 bits (180), Expect = 2e-13
Identities = 102/704 (14%), Positives = 221/704 (31%), Gaps = 184/704 (26%)
Query: 161 HSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFV-ILDEIDSILIDEART 219
H + ++ E Y D L D + + D SIL E
Sbjct: 5 HHMDFETGEHQYQYK-------DILSVFE-----DAFVDNFDCKDVQDMPKSILSKEEID 52
Query: 220 PLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFL 279
+I+S + + + + + +V + + ++ N K+ I E Q +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSM 107
Query: 280 TENGYEKYEN-------ILIKMALRAHVLYH--KNKHYIIKNNKIIIVDEFTGRLM---- 326
Y + + + K + Y + ++ K +++D G +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---G--VLGSG 162
Query: 327 KTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEI 386
KT W + AL+ + ++Q + F+++ + ET Q++
Sbjct: 163 KT--W---V--ALDVCLSYKVQC----------KMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 387 Y---------KLETITVPPNKINKRKDLQDKIYKTMEEK-YQA---ILMDIKN------- 426
+ + + +I+ +Q ++ + ++ K Y+ +L++++N
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 427 ---CYIKEQPVLVGTTSIENSELLSNILKKN----------------NLPHSVLNAKQHK 467
C +L+ T + ++ LS + +L L+ +
Sbjct: 263 NLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 468 LEAQIIAQAGHPKMIT-IAT---NMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIK 523
L + +P+ ++ IA + D N D I+ ++ V + + +
Sbjct: 318 LPRE--VLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSL--NVLEPAEYR 372
Query: 524 KLKNEWMLLHDKV-ISSGGLHII--GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDD 580
K+ + + I + L +I + + + N+L S + P +S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPS 430
Query: 581 SLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIY 640
L+ + + + + I + Y+I + FD + Y D Y
Sbjct: 431 IYLELKVKLENEYALHR-SI---------VDHYNI--------PKTFDSDDLIPPYLDQY 472
Query: 641 NNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFS--KYIS--LKKSDKEWDIIGLEL 696
L++ E R + +F +++ ++ W+ G L
Sbjct: 473 ------FYSHIGHHLKNIEHPE-----RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 697 ILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFL-NFERNIILQ 755
++ K Y K + D KYE + + FL E N+I
Sbjct: 522 NTLQQL-----------KFY--KPYICDN----DPKYERLVNAI--LDFLPKIEENLI-- 560
Query: 756 SIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHK 799
KY D LR + EA K +
Sbjct: 561 -CSKY-------TDLLRIALM-------AEDEAIFEEAHKQVQR 589
Score = 70.3 bits (171), Expect = 2e-12
Identities = 84/518 (16%), Positives = 167/518 (32%), Gaps = 146/518 (28%)
Query: 2 SFLTKIFGSRNQRL------LKKYQ-KIVQKINELESVMQKLSDEELQNQTSKLKQSIH- 53
S +T+++ + RL KY +Q +L + +L + I
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK--------NVLIDG 157
Query: 54 ---SGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVA 110
SG+ + + A VC S +V F + + N+ + E
Sbjct: 158 VLGSGK---TWV--ALDVCL--SYKVQCKMDFKI--------FWLNLKNCNSPE------ 196
Query: 111 TLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS--SEISHSLKKKSY 168
T+ L L L + D W S + + + ++S +E+ LK K Y
Sbjct: 197 TVLEMLQKL-------------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 169 E------ADITYGTNNEF--GFDY----L---RDNMVFNSNDRVQRKLNFVILDEIDSIL 213
E ++ N + F+ L R V + + + ++
Sbjct: 244 ENCLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMTLT 299
Query: 214 IDEARTPL-----IISGEIKNNAQYFYKIINP-----IPKLLVPEIDTKNIKKNIKYTKK 263
DE ++ L ++ NP I + + + T + K++ K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREV----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 264 NTGDYIIDYETNQVFLTENGYEKY--------ENILIKMALRAHVLYHKNKHYIIKNNKI 315
T II+ N L Y K + I L + +++ +IK++ +
Sbjct: 356 TT---IIESSLNV--LEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFD----VIKSDVM 405
Query: 316 IIVDEFTGRLMKTRRWAEG--------------------LHQALEAKENLEIQNETQTLA 355
++V++ + ++ E LH+++ N+ ++ L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 356 SITFQNYFRMYKKISG--MTGTAETEAY-EFQEIY--------KLETITVPPNKINKRKD 404
YF Y I G + E F+ ++ K+ + N +
Sbjct: 466 PPYLDQYF--YSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 405 -LQD-KIYKTM----EEKYQAILMDIKNCYIKEQPVLV 436
LQ K YK + KY+ ++ I + K + L+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Score = 36.4 bits (83), Expect = 0.044
Identities = 47/257 (18%), Positives = 92/257 (35%), Gaps = 62/257 (24%)
Query: 578 LDDSLLKFFSSDQIK-IVMEKLKIPKGKSIESNLASYSIESAQRKIE--LR-NFD----- 628
+ D S ++I I+M K + + L S E Q+ +E LR N+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 629 IRKQLLE---YDDIYNNQRKIICQERNKLLESKNIS--EIIKILRYDVLIRLFS-KYISL 682
I+ + + +Y QR + + N++ N+S + LR L+ L K + +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLI 155
Query: 683 ---KKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKI 739
S K W + L++ L + + + FKIF+ + + E +++
Sbjct: 156 DGVLGSGKTW--VALDVCLSYKVQCKMDFKIFW----------LNLKN--CNSPETVLEM 201
Query: 740 LNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHK 799
L +L ID W ++ I+ + E +R
Sbjct: 202 LQK----------LLYQIDPNWTSRSDHSSNIKLRIH-------SIQAELRR-------- 236
Query: 800 MLNLIKYEAIKKIMTIL 816
L+K + + + +L
Sbjct: 237 ---LLKSKPYENCLLVL 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 2e-09
Identities = 78/409 (19%), Positives = 136/409 (33%), Gaps = 126/409 (30%)
Query: 7 IF---GSRN------QRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSG-- 55
IF G+ + + L + Y +V + ++ + L EL T ++ G
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDL--IKFSAETL--SELIRTTLDAEKVFTQGLN 214
Query: 56 -----ETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIAL-HY---GNISEMQTGEGK 106
E + K + + S LIG I L HY + GE
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPIS----------CPLIGVIQLAHYVVTAKLLGFTPGE-- 262
Query: 107 TLVATLAAYLNSLSGQGVHIVT---ISDYLAKRDAEWMSVLYNWLGLS--IGVNSSE--- 158
L +YL +G +VT I+ + + + + IGV E
Sbjct: 263 -----LRSYLKGATGHSQGLVTAVAIA--ETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 159 ---ISHSLKKKSYEADI---TY-----GTNNEFGFDYLRD-NMVFNSNDRVQRKL----- 201
+ S+ + S E + + E DY+ N + +V+ L
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 202 NFVI------LDEIDSIL--------IDEARTPLIISGE-IKNNAQYFYKIINPI--P-- 242
N V+ L ++ L +D++R P S +K + ++ P+ P
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SERKLKFSNRF-----LPVASPFH 428
Query: 243 -KLLVP---EIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGY---EKYENI---LI 292
LLVP I+ +K N+ + K D I V+ T +G +I ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAK---DIQI-----PVYDTFDGSDLRVLSGSISERIV 480
Query: 293 KMALRAHVLYHKNKHYIIKNNKIIIVDEF-------TGRLMKTRRWAEG 334
+R V + + + I+D F G L T R +G
Sbjct: 481 DCIIRLPVKWETTTQFKATH----ILD-FGPGGASGLGVL--THRNKDG 522
Score = 50.4 bits (120), Expect = 3e-06
Identities = 79/518 (15%), Positives = 160/518 (30%), Gaps = 156/518 (30%)
Query: 220 PLIIS-GEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKN-IKYTKKNTGDYIIDYETNQV 277
PL +S G ++ + + +P +++ K + T + D E
Sbjct: 8 PLTLSHGSLE------HVL--LVPTASFFIASQ--LQEQFNKILPEPTEGFAADDEPTTP 57
Query: 278 ------FLT-------ENGYEKYENILIKMALRA---HVLYHKNKHYIIKNNKIIIVDEF 321
FL + +++ +L + L L + H + ++ E
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTEFENCYLEGNDIHALAAK----LLQEN 112
Query: 322 TGRLMKTRRWAEGLHQALE-AKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEA 380
L+KT+ + A AK + ++ + ++ + ++ I G G T+
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVA-IFG--GQGNTDD 168
Query: 381 Y--EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEE---------KYQAILMDIKN--- 426
Y E +++Y+ T DL +T+ E K ++I
Sbjct: 169 YFEELRDLYQ----TYHVLV----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 427 --------CYIKEQPV---LVGTTSIENSELLSNILKKN-----NLPHSVLNAKQHKLEA 470
Y+ P+ L+G + + + + +L + Q + A
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 471 QIIAQAG--------HPKMITIATNMAGRGT--------------DIILGGN-IDSY--- 504
IA+ K IT+ + R D + + S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 505 IKDI-KKNISSEVKKKNKIKK--------LKNEWMLLHDKVISSG------GLHIIGTER 549
I ++ ++ + V K N L N ++ SG GL++
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AKNLVVSGPPQSLYGLNL----- 391
Query: 550 HESRRI-----DNQLRGR-SGRQGDP-GSSRF----------YL-SLDDSLLKFFSSDQI 591
R+ +Q R S R+ S+RF L D + K + +
Sbjct: 392 -TLRKAKAPSGLDQSRIPFSERK--LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 592 KIVMEKLKIP-----KGKSIESNLASYSIESAQRKIEL 624
+ ++IP G S+L S ++R ++
Sbjct: 449 SFNAKDIQIPVYDTFDG----SDLRVLSGSISERIVDC 482
Score = 48.5 bits (115), Expect = 1e-05
Identities = 38/277 (13%), Positives = 84/277 (30%), Gaps = 85/277 (30%)
Query: 4 LTKIF-GSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS-- 60
LT F G + +R+ + Y ++ + + + +E+ ++ L +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQ 1730
Query: 61 -----ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAY 115
+ A+ LK + A H S GE A LA+
Sbjct: 1731 FTQPALT--LMEK---AAFEDLK-SKGLIPADATFAGH----S---LGE---YAA-LASL 1773
Query: 116 LNSLS-GQGVHIVTI----SDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEA 170
+ +S V +V RD S G+ I +N ++ S +++ +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN----YGM-IAINPGRVAASFSQEALQY 1828
Query: 171 DITYGTNNEFGFDYLRDNMV----FNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGE 226
+ G+ +V +N ++ Q + +G+
Sbjct: 1829 -VVERVGKRTGW------LVEIVNYNVENQ-Q----------------------YVAAGD 1858
Query: 227 IKNNAQYFYKIINPIPKLLVPEIDTKNIK-KNIKYTK 262
++ ++ + +L IK + I +
Sbjct: 1859 LRA--------LDTVTNVL------NFIKLQKIDIIE 1881
Score = 47.0 bits (111), Expect = 3e-05
Identities = 83/614 (13%), Positives = 168/614 (27%), Gaps = 228/614 (37%)
Query: 2 SFLTKIFGSRNQRLLKKYQKIVQK-INELESVMQKLSDEELQNQTSKLKQSIHS-----G 55
FL + + ++ +++ + E E+ L + IH+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLEGND-----------IHALAAKLL 109
Query: 56 ETLDSILPKAFSVCR------EASKRVLKMRH----F------DVQLI---GGIALHYGN 96
+ D+ L K + + +KR + F + QL+ GG GN
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG----QGN 165
Query: 97 I----SEMQ----TGEG--KTLVATLAAYLNSLS----------GQGVHIVT-ISDYLAK 135
E++ T L+ A L+ L QG++I+ + +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 136 RDAEWM-SVLYNW--LGL-----------SIGVNSSEISHSLKKKS-YEADI-------T 173
D +++ S+ + +G+ +G E+ LK + + +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 174 YGTNNEF---GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNN 230
+ F + ++F R L P I+ ++NN
Sbjct: 286 TDSWESFFVSVRKAIT--VLFFIGVRCYEAYPNTSL------------PPSILEDSLENN 331
Query: 231 AQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLT-ENGYEKYEN 289
P P L + + + ++ + T + QV ++ NG
Sbjct: 332 EG------VPSPMLSISNLTQEQVQDYVNKTNSHLP------AGKQVEISLVNGA----- 374
Query: 290 ILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGR---LMKTRRWAEGLHQALEAKENLE 346
+ V+ +G L GL+ L +
Sbjct: 375 -------KNLVV--------------------SGPPQSL-------YGLNLTLRKAKAPS 400
Query: 347 IQNETQTLAS---ITFQNYF--------RMYKKISGMTGTAETEAYEFQEIYKLETITVP 395
++++ S + F N F + ++ + ++
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHL-----LVPASDL----INKDLVKNNVSFN 451
Query: 396 PNKINKRKDLQDKIYKT-----MEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNI 450
KD+Q +Y T + +I I +C I PV
Sbjct: 452 A------KDIQIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPV---------------- 488
Query: 451 LKKNNLPHSVLNAKQHKLEAQII-----AQAGHPKMITIATNMAGRGTDIILGGNIDSYI 505
+ H I+ +G + N G G +I+ G +D
Sbjct: 489 ----KWETTTQFKATH-----ILDFGPGGASGLGVLT--HRNKDGTGVRVIVAGTLDI-- 535
Query: 506 KDIKKNISSEVKKK 519
N + K
Sbjct: 536 -----NPDDDYGFK 544
Score = 43.9 bits (103), Expect = 3e-04
Identities = 82/521 (15%), Positives = 157/521 (30%), Gaps = 180/521 (34%)
Query: 389 LE-TITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPV----LVG------ 437
LE + VP LQ++ K + E + D ++P LVG
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-------DEPTTPAELVGKFLGYV 68
Query: 438 TTSIENS------ELL--------SNILKKNNLPHSVL----------NAKQHKL----- 468
++ +E S ++L + L+ N++ H++ K +L
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNYI 127
Query: 469 EAQIIAQAGHPKMITIA-TNMAGRG-TDI--ILGG--NIDSYIKDIKK--NISSEVKKKN 520
A+I+A+ K A G G + I GG N D Y ++++
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY------- 180
Query: 521 KIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQ--LRGRSGRQGDPGSSRFYLSL 578
L + + + +S + E+ ++ ++ L S P YL
Sbjct: 181 --HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT---PDKD--YL-- 231
Query: 579 DDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQL----- 633
L S I ++ LA Y + + + ++R L
Sbjct: 232 ---LSIPISCPLIGVI--------------QLAHYVV--TAKLLGFTPGELRSYLKGATG 272
Query: 634 --------------LEYDDIYNNQRKII---------CQE--RNKLLESKNISEIIKI-- 666
++ + + RK I C E N L + + ++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 667 -----------LRYDVL---IRLFSK--------YISLKKSDKEW-------DIIGLELI 697
L + + + + ISL K + GL L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 698 LKKEF---KLDISFKI-FFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNII 753
L+K LD S +I F ++K + F+ + F L ++I
Sbjct: 393 LRKAKAPSGLDQS-RIPFSERKLKFSNRFLPVASPFHSHL------------LVPASDLI 439
Query: 754 LQSIDKYWIEHLLSLDQLR-------QGINLRSYAQKDPKR 787
+ + K + + ++ G +LR + +R
Sbjct: 440 NKDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Score = 40.8 bits (95), Expect = 0.002
Identities = 59/381 (15%), Positives = 109/381 (28%), Gaps = 160/381 (41%)
Query: 181 GFDYLRDN-----MVFNSNDR-VQRKLNFVILDEIDSILIDEARTPLII--SGE----IK 228
G D L V+N D + F ILD ++ L I GE I+
Sbjct: 1632 GMD-LYKTSKAAQDVWNRADNHFKDTYGFSILD-----IVINNPVNLTIHFGGEKGKRIR 1685
Query: 229 NN-AQYFYKII---NPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTEN-- 282
N + ++ I + + EI+ +++ Y E + T+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEIN------------EHSTSYTFRSEKGLLSATQFTQ 1733
Query: 283 ------GYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVD---------EFTGRLMK 327
+E +K+ +I D E+
Sbjct: 1734 PALTLMEKAAFE--------------------DLKSKGLIPADATFAGHSLGEYA----- 1768
Query: 328 TRRWAEGLHQALEAKENLEIQNETQTLA-SITFQN-----YFRMYKKISGMTGTAETEAY 381
AL + LA ++ ++ ++R G A
Sbjct: 1769 ----------ALAS------------LADVMSIESLVEVVFYR---------GMTMQVAV 1797
Query: 382 EFQEIYKLET--ITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTT 439
E+ + I + P ++ +E Q ++ + K LV
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFS---------QEALQYVVERVG----KRTGWLV--- 1841
Query: 440 SIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGG 499
I N N+ + Q +A AG + + TN+ + I
Sbjct: 1842 EIVN----------YNVENQ-----------QYVA-AGDLRALDTVTNVL----NFIKLQ 1875
Query: 500 NIDSYIKDIKKNISSE-VKKK 519
ID I +++K++S E V+
Sbjct: 1876 KID--IIELQKSLSLEEVEGH 1894
Score = 37.0 bits (85), Expect = 0.032
Identities = 46/315 (14%), Positives = 91/315 (28%), Gaps = 116/315 (36%)
Query: 283 GYEKYENILIKMAL--RAHVLYHKNKHY------IIKNNKIIIVDEFTGRLMKTRRWAEG 334
G + Y+ + RA H Y I+ NN + + F G K R
Sbjct: 1632 GMDLYKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR---- 1685
Query: 335 LHQALEAKENLEIQNETQTLASITFQNYFRM-YKKISGMTGTAETEAYEFQEI-YKLETI 392
+NY M ++ + + G +TE F+EI +
Sbjct: 1686 -------------------------ENYSAMIFE--TIVDGKLKTEKI-FKEINEHSTSY 1717
Query: 393 T-VPPNKINKRKDLQDKIYKTMEEKY-Q--------AILMDIKNCYIKEQPV-------- 434
T + T ++ Q A D+K+ +
Sbjct: 1718 TFRSEK---------GLLSAT---QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 435 ----LV---GTTSIENS--------ELLSNILKKNNLPHS------------VLNAKQHK 467
L SIE+ + + ++ L S + Q
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 468 LE---AQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKK--NISSEVKKKN-K 521
L+ ++ + G ++ I N + G+ ++ + N+ + +K +
Sbjct: 1826 LQYVVERVGKRTG--WLVEIV-NYNVENQQYVAAGD----LRALDTVTNVLNFIKLQKID 1878
Query: 522 IKKLKNEWMLLHDKV 536
I +L+ L ++V
Sbjct: 1879 IIELQKSLSL--EEV 1891
Score = 32.7 bits (74), Expect = 0.61
Identities = 23/155 (14%), Positives = 36/155 (23%), Gaps = 48/155 (30%)
Query: 1 MSFLTKI---FGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLK---QSIHS 54
FL + F S LL + + + L + ++
Sbjct: 418 NRFLP-VASPFHSH---LLVPAS---------DLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 55 GETL----DSILPKAFSVCRE-ASKRVLKMRHFDVQLIGGIALHY-----GNISEMQTGE 104
G L SI + V ++ A H G S G
Sbjct: 465 GSDLRVLSGSISE---RIVDCIIRLPV----KWETTTQFK-ATHILDFGPGGAS----GL 512
Query: 105 GKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAE 139
G L G GV ++ D +
Sbjct: 513 GV-LTHRN------KDGTGVRVIVAGTLDINPDDD 540
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.011
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 596 EKLKIPKGKSIESNLASYSIESA-----QRKIE 623
EK + K ++++L Y+ +SA + +E
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 518 KKNKIKKLKNEWMLLHDKVISSGGLHIIGT 547
+K +KKL+ L D S+ L I T
Sbjct: 18 EKQALKKLQASLKLYADD--SAPALAIKAT 45
Score = 28.4 bits (62), Expect = 5.5
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 31/61 (50%)
Query: 382 EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSI 441
E Q + KL+ L K+Y D P L ++
Sbjct: 18 EKQALKKLQA------------SL--KLYAD----------D-------SAPALAIKATM 46
Query: 442 E 442
E
Sbjct: 47 E 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 36.7 bits (84), Expect = 0.034
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 102 TGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISH 161
T GKT+VA A + + Q V + L+ + + + +GL G +
Sbjct: 110 TSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN--- 166
Query: 162 SLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEI 209
+A T + LR +M++ ++ + R++ +VI DE+
Sbjct: 167 ------PDAGCLVMTT-----EILR-SMLYRGSEVM-REVAWVIFDEV 201
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 36.7 bits (84), Expect = 0.037
Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 23/189 (12%)
Query: 28 ELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQL- 86
E+++ + E LQ + + H ++ P KRV + R + L
Sbjct: 127 EVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLD 186
Query: 87 ------IGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEW 140
I I + T GKT+VA A + + Q V + L+ +
Sbjct: 187 PFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRE 246
Query: 141 MSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRK 200
+ + +GL G + +A T + LR +M++ ++ + R+
Sbjct: 247 LLAEFGDVGLMTGDITIN---------PDAGCLVMTT-----EILR-SMLYRGSEVM-RE 290
Query: 201 LNFVILDEI 209
+ +VI DE+
Sbjct: 291 VAWVIFDEV 299
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 32.6 bits (74), Expect = 0.53
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 491 RGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEW 529
GTD + + I N + + K K ++EW
Sbjct: 411 GGTDYWNDLSNRKLVGKINTNSNYVHRNKQNDKLFRDEW 449
Score = 28.8 bits (64), Expect = 9.3
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 491 RGTDIILGGN---IDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVI 537
G D+ GG ++ I+++ K E+ + IK + +W + +
Sbjct: 103 MGNDMDFGGYSTKAENKIQEVFKGAHGEISEHK-IKNFRKKWWNEFREKL 151
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 30.8 bits (69), Expect = 1.9
Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 163 LKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPL- 221
+K + +E GF +++ + ++ +E + + + PL
Sbjct: 208 FQKSGKGLSLWDTQESESGFT----PILWAEYPHWEGEIIRFETEETRKL--EISGMPLG 261
Query: 222 ----IISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKN-IKYTKKNTGDYIIDYETNQ 276
I + + LVP + +N+K + Y K ++G ++ +
Sbjct: 262 DLFHIRFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERAKE 321
Query: 277 VFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDE 320
+ + Y ++ V + Y + ++ E
Sbjct: 322 L---RDFYATPHLVVAHTKGTRVVAAWDERAYPWREEFHLLPKE 362
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 29.5 bits (67), Expect = 3.1
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 88 GGIAL-HYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141
G I L H T L + +L +G VT+++ +
Sbjct: 149 GTIILLHDVQPEPHPT------PEALDIIIPTLKSRGYEFVTLTELFTLKGVPID 197
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction,
recombination,complex (recombinase/DNA), hydrolase,
ligase/DNA complex; 2.00A {Enterobacteria phage P1}
SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A
1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A
5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A*
3c28_A 1crx_A* 1pvr_A ...
Length = 324
Score = 29.1 bits (65), Expect = 5.9
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 110 ATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKK 165
+ YL L +G+ + TI +L + +++L+ GL +S+ +S +++
Sbjct: 50 EDVRDYLLYLQARGLAVKTIQQHLGQ-----LNMLHRRSGLPRPSDSNAVSLVMRR 100
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus,
phosphoprotein, UBL conjugation pathway, WD repeat,
nuclear protein; 1.60A {Saccharomyces cerevisiae}
Length = 253
Score = 28.9 bits (64), Expect = 6.3
Identities = 12/50 (24%), Positives = 15/50 (30%)
Query: 18 KYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFS 67
I I ++ S + DE L L S E L S S
Sbjct: 17 NPDTIFNGIVKINSNEKTFDDEILAQIGGALHDIDESWELLLSFANTIRS 66
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Agrobacterium tumefaciens str}
Length = 261
Score = 28.8 bits (64), Expect = 6.9
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 109 VATLAAYLNSLSGQGVHIVTISDYLAKRDAEWM 141
+A ++ + G+G+ IV +S ++ + E
Sbjct: 224 IAAISKWSREAGGRGIEIVGVSALVSGQAGEGH 256
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins,
structural genomics, J center for structural genomics,
JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Length = 454
Score = 29.0 bits (65), Expect = 8.1
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 628 DIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRY-DVL 672
D+R LLE + + + R L++ + +LR +V
Sbjct: 293 DVRGHLLEENKYAGKTVWWLYKLRGTDLKTAPLECNNVVLRLSEVY 338
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 28.4 bits (64), Expect = 8.8
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 105 GKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEW 140
+ L + L QG +I D + +++
Sbjct: 202 SRDNAEALDDAITDLKKQGYTFKSIDDLMFEKEMRL 237
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.9 bits (65), Expect = 9.3
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 102 TGEGKT-LVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEIS 160
TG GKT ++ +L +L G+ +++ + L + AE + G+
Sbjct: 80 TGVGKTSFGLAMSLFL-ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYH 138
Query: 161 HSLKKKSYEADITYGTNNEFGFDYL-RDNMVFNSNDRVQRKLNFVILDEIDSIL 213
+ K+ E + N F + + + R +F+ +D++D+IL
Sbjct: 139 GRIPKREKENFMQNLRN----FKIVITTTQFLSKHYRELGHFDFIFVDDVDAIL 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.375
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,345,931
Number of extensions: 783722
Number of successful extensions: 2332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2274
Number of HSP's successfully gapped: 98
Length of query: 816
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 715
Effective length of database: 3,881,772
Effective search space: 2775466980
Effective search space used: 2775466980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)