RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2371
(816 letters)
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 248 bits (634), Expect = 1e-76
Identities = 119/249 (47%), Positives = 174/249 (69%), Gaps = 5/249 (2%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGE---T 57
L+K+ R++K+ +K+ + L ++KL+D EL+ +T + K+ + + T
Sbjct: 15 ADILSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPET 74
Query: 58 LDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLN 117
LD +LP+AF+V REA+ RVL R FDVQ++G ALH GN++EM+TGEGKTL L AYLN
Sbjct: 75 LDDLLPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLN 134
Query: 118 SLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTN 177
+L+G GVHIVT++DYLAKRD+EWM ++ +LGL +GV + ++ ++ +Y ADITYGTN
Sbjct: 135 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTN 194
Query: 178 NEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEI--KNNAQYFY 235
NEFGFDYLRDNM + +D VQR ++ I+DE+DSILIDEARTPLIIS + Q ++
Sbjct: 195 NEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISNQTLATITLQNYF 254
Query: 236 KIINPIPKL 244
++ + + +
Sbjct: 255 RLYDKLAGM 263
Score = 89.6 bits (222), Expect = 3e-20
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 15/102 (14%)
Query: 296 LRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLA 355
LR ++ + + ++ IVDE L+ EA+ L I N QTLA
Sbjct: 202 LRDNMAHSLDDLVQRGHH-YAIVDEVDSILID------------EARTPLIISN--QTLA 246
Query: 356 SITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPN 397
+IT QNYFR+Y K++GMTGTA+TEA E EIYKL +++P N
Sbjct: 247 TITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 288
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 231 bits (591), Expect = 1e-70
Identities = 122/243 (50%), Positives = 173/243 (71%), Gaps = 5/243 (2%)
Query: 1 MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
+ L K+F +R L +Y+KI I+ + + LSD+ L+++T + K+ + G T D
Sbjct: 2 LGILNKMFDP-TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDD 60
Query: 61 ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
+L +AF+V REAS+RV M F VQL+GG+ALH GNI+EM+TGEGKTL +TL YLN+L+
Sbjct: 61 LLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALT 120
Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
G+GVH+VT+++YLA RDAE M ++ +LGL++G+N + +S K+++Y ADITY TNNE
Sbjct: 121 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNEL 180
Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNA----QYFYK 236
GFDYLRDNMV VQR L+F ++DE+DSILIDEARTPLIISG+ A Q +++
Sbjct: 181 GFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSMTLATITFQNYFR 240
Query: 237 IIN 239
+
Sbjct: 241 MYE 243
Score = 99.3 bits (247), Expect = 1e-23
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 294 MALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQT 353
+ + + + ++DE L+ A+ L I ++ T
Sbjct: 182 FDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDE------------ARTPLIISGQSMT 229
Query: 354 LASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPN 397
LA+ITFQNYFRMY+K++GMTGTA+TE EF+ IY ++ +T+P N
Sbjct: 230 LATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 273
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 219
Score = 223 bits (569), Expect = 3e-68
Identities = 107/217 (49%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 400 NKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459
R+D D IYKT E KY A++ D+ Y K QPVL+GTTS+E SE LS K +PH+
Sbjct: 3 MIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 62
Query: 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISS----- 514
VLNAK H+ EA IIA AG +T+ATNMAGRGTDI+LGGN+D +
Sbjct: 63 VLNAKYHEQEATIIAVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVET 122
Query: 515 ----EVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPG 570
E +++ +K E +VI +GGL+++GTERHESRRIDNQLRGRSGRQGDPG
Sbjct: 123 PEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPG 182
Query: 571 SSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIE 607
SRFYLSL D L++ F+ ++ ++ +L +P IE
Sbjct: 183 ESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIE 219
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 183 bits (466), Expect = 2e-54
Identities = 93/208 (44%), Positives = 125/208 (60%), Gaps = 35/208 (16%)
Query: 400 NKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHS 459
R D D IY+TME K++A+ D+ Y+ QPVLVGT ++E SEL+S +LK +PH
Sbjct: 3 VVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 62
Query: 460 VLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKK 519
VLNAK H+ EAQII +AG +TIATNMAGRGTDI LG
Sbjct: 63 VLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG--------------------- 101
Query: 520 NKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLD 579
+ V GGL ++GTERHESRRIDNQLRGRSGRQGDPG ++FYLS++
Sbjct: 102 --------------EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSME 147
Query: 580 DSLLKFFSSDQIKIVMEKLKIPKGKSIE 607
D L++ F +++ ++++ + I+
Sbjct: 148 DELMRRFGAERTMAMLDRFGMDDSTPIQ 175
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of
SecA {Bacillus subtilis [TaxId: 1423]}
Length = 210
Score = 156 bits (396), Expect = 3e-44
Identities = 67/208 (32%), Positives = 123/208 (59%)
Query: 608 SNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKIL 667
S + S ++ES+Q+++E NFD RKQLL+YDD+ QR++I ++R ++++S+N+ EI++ +
Sbjct: 1 SKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDSENLREIVENM 60
Query: 668 RYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILY 727
L R + Y ++ +EW + GL ++ + + + + + I+
Sbjct: 61 IKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMD 120
Query: 728 TFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKR 787
KY K + ++ FE+ I+L+++D W++H+ ++DQLRQGI+LR+YAQ +P R
Sbjct: 121 RIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLR 180
Query: 788 EYKREAFKLFHKMLNLIKYEAIKKIMTI 815
EY+ E F +F M+ I+ E K +M
Sbjct: 181 EYQMEGFAMFEHMIESIEDEVAKFVMKA 208
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of
SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 220
Score = 138 bits (347), Expect = 1e-37
Identities = 60/219 (27%), Positives = 115/219 (52%), Gaps = 12/219 (5%)
Query: 608 SNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKIL 667
+ + + +I+SAQ ++E +NF++RK +L+YD++ N QRK+I ER ++LE +N+ + +
Sbjct: 1 AKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEGENLKDQA-LD 59
Query: 668 RYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYT---------- 717
+I + + + ++WD+ L LK + + I+ +K +
Sbjct: 60 MVRDVITAYVDGATGEGYAEDWDLDALWTALKTLYPVGITADSLTRKDHEFERDDLTREE 119
Query: 718 -IKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGIN 776
++ + + +I ERN++L ID+ W EHL +D L++GI
Sbjct: 120 LLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVIDRKWREHLYEMDYLKEGIG 179
Query: 777 LRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
LR+ AQ+DP EY+RE + +F ML+ +K E++ + +
Sbjct: 180 LRAMAQRDPLVEYQREGYDMFMAMLDGMKEESVGFLFNV 218
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of
SecA {Bacillus subtilis [TaxId: 1423]}
Length = 122
Score = 95.0 bits (236), Expect = 9e-24
Identities = 50/133 (37%), Positives = 64/133 (48%), Gaps = 33/133 (24%)
Query: 234 FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIK 293
Y N + L E DY D +T V LTE G K E
Sbjct: 7 LYVQANAFVRTLKAE-----------------KDYTYDIKTKAVQLTEEGMTKAEKAFGI 49
Query: 294 M----------------ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQ 337
AL+AHV K+ Y++++ +++IVD FTGRLMK RR++EGLHQ
Sbjct: 50 DNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQ 109
Query: 338 ALEAKENLEIQNE 350
A+EAKE LEIQNE
Sbjct: 110 AIEAKEGLEIQNE 122
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of
SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 124
Score = 91.2 bits (226), Expect = 2e-22
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 33/133 (24%)
Query: 234 FYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL-- 291
+Y + L+ ++ Y +D V + E G E E+ L
Sbjct: 9 WYTEFARLAPLMEKDVH-----------------YEVDLRKRTVGVHEKGVEFVEDQLGI 51
Query: 292 --------------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQ 337
+ AL+A L+ ++K YI+++ +++IVDEFTGR++ RR+ EG+HQ
Sbjct: 52 DNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQ 111
Query: 338 ALEAKENLEIQNE 350
A+EAKE++EI+ E
Sbjct: 112 AIEAKEHVEIKAE 124
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 51.8 bits (123), Expect = 8e-08
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 70 REASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTI 129
+ +KR+L+ F TG GKT + +L G+ +++
Sbjct: 49 KMWAKRILRKESFAAT--------------APTGVGKTSFGLAMSLFLALKGKRCYVIFP 94
Query: 130 SDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRD-N 188
+ L + AE + G+ + + + + N F +
Sbjct: 95 TSLLVIQAAETIRKYAEKAGVGTEN----LIGYYHGRIPKREKENFMQNLRNFKIVITTT 150
Query: 189 MVFNSNDRVQRKLNFVILDEIDSIL 213
+ + R +F+ +D++D+IL
Sbjct: 151 QFLSKHYRELGHFDFIFVDDVDAIL 175
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 33.4 bits (75), Expect = 0.086
Identities = 21/172 (12%), Positives = 50/172 (29%), Gaps = 28/172 (16%)
Query: 412 TMEEKYQAILMDIKNCYIKEQP--VLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLE 469
E + + + ++ + + SI+ ++ L+KN L+ K
Sbjct: 157 DEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFD-- 214
Query: 470 AQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEW 529
++ I + + T+++ G + ID K + +
Sbjct: 215 SEYIKTRTNDWDFVVTTDISEMGANFKAERVIDP----------RRCMKPVILTDGEERV 264
Query: 530 MLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDS 581
+L ++ Q RGR GR + ++ +
Sbjct: 265 ILAGPMPVTHSSAA--------------QRRGRVGRNPKNENDQYIYMGEPL 302
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 31.3 bits (69), Expect = 0.30
Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 11/171 (6%)
Query: 100 MQTGEGKTLVATLAAYLNSL-SGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSE 158
+ TG GKTL+A + A G V ++ + L + AE L+N I + E
Sbjct: 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGE 89
Query: 159 ISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSN------DRVQRKLNFVILDEIDSI 212
S + K++ + + L + + D R + I
Sbjct: 90 KSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIARE 149
Query: 213 LIDEARTP--LIISGEIKNNAQYFYKIIN--PIPKLLVPEIDTKNIKKNIK 259
+A+ P + ++ + + ++IN I + ++ +++ +K
Sbjct: 150 YKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVK 200
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 29.1 bits (64), Expect = 1.6
Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 11/196 (5%)
Query: 387 YKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSEL 446
Y ++ I VP + + Y+ E+ Y+ L + + + E
Sbjct: 6 YTIKRIFVPLAED------ERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDER 59
Query: 447 LSNILKKNNLPHSVLNAKQHKLEA--QIIAQAGHPKMITIATNMAGRGTDIILGGNIDSY 504
L+ + ++K+ +I+ + K+I I T I I +
Sbjct: 60 AYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKII-IFTRHNELVYRISKVFLIPAI 118
Query: 505 IKDIKKNISSEVKKKNKIKKLKNEWML--LHDKVISSGGLHIIGTERHESRRIDNQLRGR 562
+ E+ + + + + L + + + S R Q GR
Sbjct: 119 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 178
Query: 563 SGRQGDPGSSRFYLSL 578
R L
Sbjct: 179 ILRPSKGKKEAVLYEL 194
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 29.4 bits (65), Expect = 2.0
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704
+ +C KLL ++ + + L + F+ +L K+ + ++ + +
Sbjct: 103 ECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKM---VCETDVPSEDDPTQ 159
Query: 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEH 764
+S + TI+ +K++ ++ K + L+ E IL ++
Sbjct: 160 LVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEE--ILNIFKHISVKD 217
Query: 765 LLSL 768
SL
Sbjct: 218 FTSL 221
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 99
Score = 27.5 bits (61), Expect = 2.3
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 195 DRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNI 254
+ V++ L + L+ E PL+ + +++ Q F + IP L I
Sbjct: 21 NEVEKMLKNQVNTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVKEIPNLPEARKR-YRI 79
Query: 255 KKNIKYTKKNTGDYIIDY 272
+K+++ +K ++IDY
Sbjct: 80 QKSLEMIEKLRSWFLIDY 97
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
53953]}
Length = 188
Score = 28.2 bits (62), Expect = 2.6
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 682 LKKSDKEWDIIGLELILKKEFKLD-ISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKIL 740
L + + ++G+ L + + S K+ + + F ++ D+ Y N +K
Sbjct: 116 LVEGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK-- 173
Query: 741 NNKKFLNFERN 751
N LN R+
Sbjct: 174 NPMDILNLVRD 184
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.1 bits (62), Expect = 4.5
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 491 RGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEW 529
GTD + + I N + + K K ++EW
Sbjct: 129 GGTDYWNDLSNRKLVGKINTNSNYVHRNKQNDKLFRDEW 167
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 27.9 bits (61), Expect = 4.7
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 95 GNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEW 140
I +T+V+ +++L +G VT+ + L W
Sbjct: 172 SYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDAPENW 217
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 6.9
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 681 SLKKSDKEWDIIGLELI-LKKEFKLDISFKIFFKKKYTIKDFFIKIL-YTFDKKYENKIK 738
+ K + E I EL ++ +FK D + + KKKY K FI +L + D + +
Sbjct: 14 NCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVN 73
Query: 739 ILNNKKF 745
+L++ ++
Sbjct: 74 LLSSNRY 80
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA
{Bacillus subtilis [TaxId: 1423]}
Length = 235
Score = 27.1 bits (59), Expect = 7.7
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 92 LHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRD 137
H G I + T L + L QG +I D + +++
Sbjct: 190 AHPGAIYLLHTVSRDN-AEALDDAITDLKKQGYTFKSIDDLMFEKE 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.375
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,065,740
Number of extensions: 157746
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 60
Length of query: 816
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 723
Effective length of database: 1,130,706
Effective search space: 817500438
Effective search space used: 817500438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)