BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2372
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From
Shewanella Oneidensis Mr-1
Length = 172
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 188 NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNI 247
+D +T+E+I +EG G+ E+ +LD++ +L PR + F++++ +
Sbjct: 4 DDNVTQEDIQAXLQEGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLDLNLPL 63
Query: 248 EKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIP 307
+ NL + S ++ FPV + ++ +G ++ K L + I+ + +D+ F+P
Sbjct: 64 DANLRTVXQSPHSRFPVCRNNVDDXVGIISAKQLLSESIAGERLELVDLVKNCN---FVP 120
Query: 308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDG 367
++S +LLE F+ S+ V+DEYG+L+G++T+ D +L G+ F EDG
Sbjct: 121 NSLSGXELLEHFRTTGSQXVFVVDEYGDLKGLVTLQDXXDALTGEF---------FQEDG 171
Query: 368 S 368
S
Sbjct: 172 S 172
>pdb|3OCM|A Chain A, The Crystal Structure Of A Domain From A Possible Membrane
Protein Of Bordetella Parapertussis
pdb|3OCM|B Chain B, The Crystal Structure Of A Domain From A Possible Membrane
Protein Of Bordetella Parapertussis
Length = 173
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 209 FNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS 268
F E N S L L ++ ++ TPR V+++NIDD+ ++ + +++FPV + S
Sbjct: 19 FGVEERNXVSGVLTLAERSIRSIXTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS 78
Query: 269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSL 328
+ +++G K L +I+ + + ++ P+ + E+I ++L +T K+++ +L L
Sbjct: 79 LDEVVGIGRAKDLVADLITEGRVRR----NRLRDPIIVHESIGILRLXDTLKRSRGQLVL 134
Query: 329 VIDEYGELEGIITINDIIHSLIGDISNSYQ 358
V DE+G +EG++T D+ ++ G+ + +
Sbjct: 135 VADEFGAIEGLVTPIDVFEAIAGEFPDEDE 164
>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
pdb|3JTF|B Chain B, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
Length = 129
Score = 77.0 bits (188), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+ PR + + ++I + + L I++++++ FPVY+ IIG L K L + +
Sbjct: 10 IXVPRSRXDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPA- 68
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+DI S ++P +FIPE LL F+ +++ L++VIDE+G + G++T D++ ++
Sbjct: 69 ---LDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTXEDVLEQIV 125
Query: 351 GDI 353
GDI
Sbjct: 126 GDI 128
>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
pdb|3OI8|B Chain B, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
Length = 156
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 194 EEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK 253
E++ L R+ + +F+ + L D R + N + +D+IE+
Sbjct: 6 EDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAXITRSRXNVLKENDSIERITAY 65
Query: 254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTM 313
++D++++ FPV + +++G L+ K L K + + S ++P +F+PE S
Sbjct: 66 VIDTAHSRFPVIGEDKDEVLGILHAKDLLKYXFNPE---QFHLKSILRPAVFVPEGKSLT 122
Query: 314 QLLETFKKNKSELSLVIDEYGELEGIITINDII 346
LL+ F++ ++ ++VIDEYG G++T DII
Sbjct: 123 ALLKEFREQRNHXAIVIDEYGGTSGLVTFEDII 155
>pdb|3DED|A Chain A, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|B Chain B, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|C Chain C, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|D Chain D, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|E Chain E, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|F Chain F, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
Length = 113
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
++EI EDGSW++ ++ DRF+E + P + N HTLAG + LG +P +++
Sbjct: 26 EDEIVQREDGSWLVDGXVSLDRFREFFELEAPLPGEAGGNIHTLAGVXLYQLGRVPSVTD 85
Query: 418 NFIWKNIKIEVIDMNNNKIERLLV 441
F W EV+D + +++++LV
Sbjct: 86 RFEWNGFSFEVVDXDRTRVDKILV 109
>pdb|3LFR|A Chain A, The Crystal Structure Of A Cbs Domain From A Putative
Metal Ion Transporter Bound To Amp From Pseudomonas
Syringae To 1.55a
pdb|3LFR|B Chain B, The Crystal Structure Of A Cbs Domain From A Putative
Metal Ion Transporter Bound To Amp From Pseudomonas
Syringae To 1.55a
Length = 136
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+ PR + I + L ++D++++ +PV +S ++G L K L I+
Sbjct: 8 IXVPRSQXISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG 67
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ D+ ++P F+PE+ LL F+ N + ++VIDEYG + G++TI D++ ++
Sbjct: 68 DSD-DVKKLLRPATFVPESKRLNVLLREFRANHNHXAIVIDEYGGVAGLVTIEDVLEQIV 126
Query: 351 GDISNSYQEE 360
GDI + + E
Sbjct: 127 GDIEDEHDVE 136
>pdb|3HF7|A Chain A, The Crystal Structure Of A Cbs-Domain Pair With Bound Amp
From Klebsiella Pneumoniae To 2.75a
Length = 130
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 67/124 (54%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+M PR ++ I+I+D+ + + ++ S + +Y+ S+ I L + ++ + +
Sbjct: 7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE 66
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ A F+PE L F++NK ++ LV+DEYG+++G++T+ DI+ ++
Sbjct: 67 FTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 126
Query: 351 GDIS 354
GD +
Sbjct: 127 GDFT 130
>pdb|2OAI|A Chain A, The Structure Of Transporter Associated Domain Corc_hlyc
From A Xylella Fastidiosa Temecula1 Hemolysin.
pdb|2R8D|A Chain A, The Structure Of Transporter Associated Domain Corc_hlyc
From A Xylella Fastidiosa Temecula1 Hemolysin In Complex
With Mg++ And Mn++
Length = 94
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
EDGS++I ++ + +E+L ++ P NYHTLAG +++ G IP + E F W
Sbjct: 16 EDGSFLIDGTLPIEELREVLGAEL--PDGEENNYHTLAGXCISYFGRIPHVGEYFDWAGW 73
Query: 425 KIEVIDMNNNKIERLLVTILN 445
+IE++D++ +I+ LL+ LN
Sbjct: 74 RIEIVDLDGARIDXLLLQRLN 94
>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein
Corc, Northeast Structural Genomics Consortium (nesg)
Target Er40
Length = 292
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 11/226 (4%)
Query: 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284
DQ + PR + + + +++ L I++S+++ FPV + I G L K L
Sbjct: 66 DQRVRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLLPF 125
Query: 285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
S+ + D ++ + +PE+ + L+ F+ + ++VIDE+G + G++TI D
Sbjct: 126 XRSDAEAFSXD--KVLRQAVVVPESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 183
Query: 345 IIHSLIG----DISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHT 400
I+ ++G + + +W + A + + F E + T
Sbjct: 184 ILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFS-----DEEVDT 238
Query: 401 LAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
+ G V GH+P E + +V ++ +I ++ V I +D
Sbjct: 239 IGGLVXQAFGHLPARGETIDIDGYQFKVAXADSRRIIQVHVKIPDD 284
>pdb|3LV9|A Chain A, Crystal Structure Of Cbs Domain Of A Putative Transporter
From Clostridium Difficile 630
Length = 148
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYK 266
G+ ++ E L + +++ + PR I D+ EK L + + +PV +
Sbjct: 4 GLIDESEQRLVDNIFEFEEKKIREIXVPRTDXVCIYESDSEEKILAILKEEGVTRYPVCR 63
Query: 267 KSISKIIGTLNTKTLF-KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
K+ I+G ++ + L+ +KI N+ I++ ++ ++I E ++ + LE +K K +
Sbjct: 64 KNKDDILGFVHIRDLYNQKINENK----IELEEILRDIIYISENLTIDKALERIRKEKLQ 119
Query: 326 LSLVIDEYGELEGIITINDIIHSLIGDIS 354
L++V+DEYG G++TI DI+ ++G+I
Sbjct: 120 LAIVVDEYGGTSGVVTIEDILEEIVGEIQ 148
>pdb|2PLS|A Chain A, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|B Chain B, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|C Chain C, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|D Chain D, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|E Chain E, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|F Chain F, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|G Chain G, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|H Chain H, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|I Chain I, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|J Chain J, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|K Chain K, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
pdb|2PLS|L Chain L, Structural Genomics, The Crystal Structure Of The CorcHLYC
Transporter Associated Domain Of A Cbs Domain Protein
From Chlorobium Tepidum Tls
Length = 86
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
EDGSW++ + K+ L + P + YHTL+G + LG +P+ + W+N
Sbjct: 7 EDGSWLLDGLIAVPELKDTLGLRA-VPEEEKGVYHTLSGXIXWLLGRLPQTGDITFWENW 65
Query: 425 KIEVIDMNNNKIERLLVTILN 445
++EVID ++ +I+++L T ++
Sbjct: 66 RLEVIDXDSKRIDKVLATKID 86
>pdb|3OCO|A Chain A, The Crystal Structure Of A Hemolysin-Like Protein
Containing Cbs Domain Of Oenococcus Oeni Psu
pdb|3OCO|B Chain B, The Crystal Structure Of A Hemolysin-Like Protein
Containing Cbs Domain Of Oenococcus Oeni Psu
Length = 153
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 215 NLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV-YKKSISKII 273
N RA + +D+ A + R + +++D+ I L+ L+ Y+ FPV KII
Sbjct: 9 NFXQRAFEXNDKVASDVXVDRTSXSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKII 68
Query: 274 G-TLNTKTLFKKIISNR---SIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLV 329
G N + + I ++ S + DI S +PE + E ++ ++V
Sbjct: 69 GYAYNYDIVRQARIDDKAKISTIXRDIVS-------VPENXKVPDVXEEXSAHRVPXAIV 121
Query: 330 IDEYGELEGIITINDIIHSLIGDISNSYQEE 360
IDEYG GIIT D+ L G++ + +E
Sbjct: 122 IDEYGGTSGIITDKDVYEELFGNLRDEQDDE 152
>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|B Chain B, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|C Chain C, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|D Chain D, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
Length = 127
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284
DQ + PR + + + +++ L I++S+++ FPV + I G L K L
Sbjct: 2 DQRVRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLLPF 61
Query: 285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
S+ + D ++ + +PE+ + L+ F+ + ++VIDE+G + G++TI D
Sbjct: 62 XRSDAEAFSXD--KVLRTAVVVPESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 119
Query: 345 IIHSLIGD 352
I+ ++G+
Sbjct: 120 ILELIVGE 127
>pdb|3I8N|A Chain A, A Domain Of A Conserved Functionally Known Protein From
Vibrio Parahaemolyticus Rimd 2210633.
pdb|3I8N|B Chain B, A Domain Of A Conserved Functionally Known Protein From
Vibrio Parahaemolyticus Rimd 2210633
Length = 130
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+ TPR V ++ I + L K D+ ++ VY + IIG ++ LFK S
Sbjct: 11 VXTPRPVVFRVDATXTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKXQQSGSG 70
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ + +P + + ++ + ++ +L+LV+DEYG + G++T+ DI L+
Sbjct: 71 --QKQLGAVXRPIQVVLNNTALPKVFDQXXTHRLQLALVVDEYGTVLGLVTLEDIFEHLV 128
Query: 351 GD 352
G+
Sbjct: 129 GE 130
>pdb|2P13|A Chain A, Transporter Associated Domain Corc_hlyc From Nitrosomonas
Europaea
pdb|2P13|B Chain B, Transporter Associated Domain Corc_hlyc From Nitrosomonas
Europaea
Length = 90
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIK 425
DG+W+ ++ + LL + + V + Y TL G+++ G+IP E +
Sbjct: 14 DGTWLXDGWISIRKASNLLEHDL---VDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLI 70
Query: 426 IEVIDMNNNKIERLLV 441
E++ +N + I ++ V
Sbjct: 71 FEIVSVNKHNIGKVRV 86
>pdb|2P4P|A Chain A, Crystal Structure Of A Corc_hlyc Domain From Haemophilus
Ducreyi
pdb|2P4P|B Chain B, Crystal Structure Of A Corc_hlyc Domain From Haemophilus
Ducreyi
Length = 86
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIK 425
+ SW+I + + L N FP NY T+ GF L IP ++ ++
Sbjct: 8 EDSWLIDGATPLEDVXRAL-NIHTFPR--DENYETIGGFXXYXLRXIPXXTDFVLYDXYX 64
Query: 426 IEVIDMNNNKIERLLVTILND 446
E+ID N +I++L V+ D
Sbjct: 65 FEIIDTENFRIDQLXVSFRXD 85
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCE 365
+PE+I + L+ +N+ + V+DE G+L G+IT++D++ Y+ + E
Sbjct: 163 VPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV------ARKKYKNAVR-DE 215
Query: 366 DGSWIISASMT-FD--RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWK 422
+G +++A+++ FD R EL V+ V + + H L + + K+ +FI
Sbjct: 216 NGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKA-IKSMKEMRQKVDADFIVG 274
Query: 423 NI 424
NI
Sbjct: 275 NI 276
>pdb|2O3G|A Chain A, Structural Genomics, The Crystal Structure Of A Conserved
Putative Domain From Neisseria Meningitidis Mc58
Length = 92
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 354 SNSYQEE---IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKIS-RNYHTLAGFVMTFL 409
SN+ +EE ++ D S + ++ + L+ Q+N P + ++HT+AG + L
Sbjct: 1 SNAEREEEPAVQGNPDESLTVEGALEYVE----LAPQLNLPQQEEDADFHTVAGLIXEEL 56
Query: 410 GHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL 444
IP + + + + EV++ +IER+ +T L
Sbjct: 57 QTIPDVGDFADFHGWRFEVVEKEGQRIERVKITKL 91
>pdb|2RK5|A Chain A, Crystal Structure Of A Domain Of The Putative Hemolysin
From Streptococcus Mutans Ua159
Length = 87
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
D ++I+ +MT + F E + S N T+AGF +T +G IP E
Sbjct: 7 DNTYIVLGTMTLNDFNEYFETDLE-----SDNVDTIAGFYLTGVGTIPSQEE 53
>pdb|3LLB|A Chain A, The Crystal Structure Of The Protein Pa3983 With Unknown
Function From Pseudomonas Aeruginosa Pao1
Length = 83
Score = 32.0 bits (71), Expect = 0.63, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 367 GSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKI 426
G +I+ A D F + ++ + + T+ G VM+ GH+PK +E +
Sbjct: 9 GDFIVKALTPVDAFNDFFGSEFS-----DEEFDTVGGLVMSAFGHLPKRNEVVELGEFRF 63
Query: 427 EVIDMNNNKIERLLVTILND 446
V++ ++ ++ L ++ L +
Sbjct: 64 RVLNADSRRVHLLRLSPLQN 83
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 250 NLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS-NRSIVNIDITSAIQPPLFIPE 308
+ +KI++ ++ Y V K +G L+ +++ K+ I N+ + I ++ P IP+
Sbjct: 44 DAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP--IPK 101
Query: 309 TISTMQLLET---FKKNKSELSLVIDEYGELEGIITINDI 345
S + + +N E V+D+ G + GI+T+ D+
Sbjct: 102 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDL 141
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 250 NLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS-NRSIVNIDITSAIQPPLFIPE 308
+ +KI++ ++ Y V K +G L+ +++ K+ I N+ + I ++ P IP+
Sbjct: 30 DAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP--IPK 87
Query: 309 TISTMQLLET---FKKNKSELSLVIDEYGELEGIITINDI 345
S + + +N E V+D+ G + GI+T+ D+
Sbjct: 88 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDL 127
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
+PP+ IS M+ + K+ ++DE+G+L GIIT DI +L
Sbjct: 9 KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 57
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
+PP+ IS M+ + K+ ++DE+G+L GIIT DI +L
Sbjct: 11 KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 59
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 37 EIAIITSK--RVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLIS---------- 84
EIA+ K +V +KL+EK ++ ALS+ ++S+ F V + ++
Sbjct: 129 EIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGI 188
Query: 85 --IFNGAFGESSLVASLTPKIRF 105
+ GA ES LVA + K F
Sbjct: 189 KKVQGGALEESQLVAGVAFKKTF 211
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 311 STMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353
+T QL+E + + ++E G L GII+I D++ + IG+I
Sbjct: 111 TTDQLMEIMTGGRFR-HVPVEENGRLAGIISIGDVVKARIGEI 152
>pdb|3I5Q|B Chain B, Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
pdb|3I5Q|A Chain A, Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
Length = 252
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297
+NFIN+ N+ + K + S FP+++ + I+ +TL K+ I + SIV+I IT
Sbjct: 111 MNFINLLSNVLIKIGKNVQDSEFIFPIFE--LFPIVCNFFYETLPKEHIVSGSIVSIFIT 168
Query: 298 SAIQPPLFIPETISTMQLLETFKKNKS----ELSLVIDEY----GELEGIITINDIIH 347
+ + F +L+ET + S E++ +I E+ + II+ NDIIH
Sbjct: 169 AGVS---FNKMYYILKELIETSDSDNSVFNKEMTWLIHEWYKSDRKFRDIISYNDIIH 223
>pdb|3I5P|A Chain A, Nup170(Aa979-1502), S.Cerevisiae
Length = 525
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297
+NFIN+ N+ + K + S FP+++ + I+ +TL K+ I + SIV+I IT
Sbjct: 384 MNFINLLSNVLIKIGKNVQDSEFIFPIFE--LFPIVCNFFYETLPKEHIVSGSIVSIFIT 441
Query: 298 SAIQPPLFIPETISTMQLLETFKKNKS----ELSLVIDEY----GELEGIITINDIIH 347
+ + F +L+ET + S E++ +I E+ + II+ NDIIH
Sbjct: 442 AGVS---FNKMYYILKELIETSDSDNSVFNKEMTWLIHEWYKSDRKFRDIISYNDIIH 496
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,645,899
Number of Sequences: 62578
Number of extensions: 444868
Number of successful extensions: 1273
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 45
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)