Query psy2372
Match_columns 447
No_of_seqs 287 out of 2607
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:17:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 100.0 7.4E-86 1.6E-90 675.9 48.0 398 27-445 2-405 (413)
2 TIGR03520 GldE gliding motilit 100.0 8.5E-85 1.8E-89 668.1 50.7 401 24-443 2-407 (408)
3 COG4536 CorB Putative Mg2+ and 100.0 4.4E-86 9.6E-91 637.2 36.4 411 16-445 2-417 (423)
4 COG1253 TlyC Hemolysins and re 100.0 3.9E-80 8.5E-85 638.7 50.8 416 16-446 3-424 (429)
5 PRK15094 magnesium/cobalt effl 100.0 1.6E-51 3.5E-56 404.2 32.6 256 178-445 24-283 (292)
6 COG4535 CorC Putative Mg2+ and 100.0 4.2E-50 9.2E-55 365.2 19.9 258 176-445 22-283 (293)
7 PF01595 DUF21: Domain of unkn 100.0 9E-32 2E-36 247.3 22.6 182 19-213 2-183 (183)
8 KOG2118|consensus 99.9 1.1E-24 2.4E-29 227.0 5.9 312 16-356 12-335 (498)
9 TIGR01302 IMP_dehydrog inosine 99.8 2.6E-18 5.5E-23 179.0 19.5 171 189-378 43-222 (450)
10 PF03471 CorC_HlyC: Transporte 99.8 1.7E-18 3.6E-23 138.0 11.2 78 363-445 2-81 (81)
11 COG3448 CBS-domain-containing 99.8 1.9E-17 4.2E-22 156.3 18.6 208 140-352 123-374 (382)
12 TIGR00400 mgtE Mg2+ transporte 99.7 2.4E-17 5.2E-22 171.9 14.5 156 189-353 88-255 (449)
13 COG2524 Predicted transcriptio 99.7 4.9E-16 1.1E-20 144.6 11.6 128 218-351 164-292 (294)
14 PRK05567 inosine 5'-monophosph 99.6 1E-14 2.2E-19 153.6 18.3 169 189-377 50-225 (486)
15 COG4109 Predicted transcriptio 99.6 3.5E-15 7.5E-20 144.3 11.4 123 221-350 183-306 (432)
16 cd04590 CBS_pair_CorC_HlyC_ass 99.6 7.6E-14 1.6E-18 116.4 13.7 110 237-348 2-111 (111)
17 cd04641 CBS_pair_28 The CBS do 99.5 1.4E-13 3.1E-18 116.8 14.1 110 237-347 2-119 (120)
18 cd04619 CBS_pair_6 The CBS dom 99.5 1.7E-13 3.8E-18 115.3 14.1 110 237-347 2-113 (114)
19 cd04603 CBS_pair_KefB_assoc Th 99.5 1.4E-13 3.1E-18 115.4 13.2 108 237-347 2-110 (111)
20 cd04630 CBS_pair_17 The CBS do 99.5 1.8E-13 4E-18 114.9 13.8 110 237-347 2-113 (114)
21 cd04593 CBS_pair_EriC_assoc_ba 99.5 1.6E-13 3.4E-18 115.4 13.2 109 238-347 3-114 (115)
22 cd04623 CBS_pair_10 The CBS do 99.5 2.5E-13 5.5E-18 113.2 14.0 109 237-347 2-112 (113)
23 cd04618 CBS_pair_5 The CBS dom 99.5 1.7E-13 3.7E-18 112.9 12.3 95 237-347 2-97 (98)
24 cd04639 CBS_pair_26 The CBS do 99.5 3.6E-13 7.8E-18 112.3 13.1 108 237-347 2-110 (111)
25 PRK01862 putative voltage-gate 99.5 2.9E-12 6.3E-17 138.0 23.5 126 223-351 444-572 (574)
26 PRK10892 D-arabinose 5-phospha 99.5 1.9E-13 4.2E-18 137.0 13.4 123 224-348 200-323 (326)
27 cd04605 CBS_pair_MET2_assoc Th 99.5 6.3E-13 1.4E-17 110.6 14.2 106 237-347 3-109 (110)
28 cd04600 CBS_pair_HPP_assoc Thi 99.5 3.9E-13 8.4E-18 114.3 13.0 110 237-347 3-123 (124)
29 COG3620 Predicted transcriptio 99.5 1.7E-13 3.7E-18 118.9 10.7 155 190-351 18-185 (187)
30 cd04617 CBS_pair_4 The CBS dom 99.5 4.7E-13 1E-17 113.3 13.2 110 237-347 2-117 (118)
31 cd04631 CBS_pair_18 The CBS do 99.5 4.9E-13 1.1E-17 113.9 13.3 111 237-347 2-124 (125)
32 cd04801 CBS_pair_M50_like This 99.5 3.2E-13 6.9E-18 113.4 11.7 108 237-347 2-113 (114)
33 PRK11543 gutQ D-arabinose 5-ph 99.5 2.3E-13 5E-18 136.1 12.7 122 225-348 196-318 (321)
34 cd04596 CBS_pair_DRTGG_assoc T 99.5 4.6E-13 1E-17 111.4 12.5 105 236-347 2-107 (108)
35 cd04624 CBS_pair_11 The CBS do 99.5 7.4E-13 1.6E-17 110.5 13.7 110 237-348 2-112 (112)
36 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 5.5E-13 1.2E-17 111.3 12.7 110 237-347 2-113 (114)
37 cd04626 CBS_pair_13 The CBS do 99.5 6.4E-13 1.4E-17 110.8 12.7 108 237-347 2-110 (111)
38 cd04588 CBS_pair_CAP-ED_DUF294 99.5 1.2E-12 2.6E-17 108.9 14.3 107 237-347 2-109 (110)
39 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 1.5E-12 3.2E-17 108.3 14.4 108 237-347 2-110 (111)
40 cd04642 CBS_pair_29 The CBS do 99.5 6.8E-13 1.5E-17 113.7 12.5 110 237-347 2-125 (126)
41 cd04615 CBS_pair_2 The CBS dom 99.5 1E-12 2.3E-17 109.8 13.3 109 238-347 3-112 (113)
42 cd04800 CBS_pair_CAP-ED_DUF294 99.5 1.3E-12 2.9E-17 108.8 13.8 108 237-347 2-110 (111)
43 cd04627 CBS_pair_14 The CBS do 99.5 1E-12 2.2E-17 112.1 13.2 110 237-346 2-121 (123)
44 cd04803 CBS_pair_15 The CBS do 99.5 1.1E-12 2.5E-17 111.1 13.4 110 237-347 2-121 (122)
45 cd04607 CBS_pair_NTP_transfera 99.5 1.8E-12 3.8E-17 108.6 14.2 108 238-347 4-112 (113)
46 cd04608 CBS_pair_PALP_assoc Th 99.5 4.7E-13 1E-17 114.9 10.5 112 237-349 3-124 (124)
47 cd04643 CBS_pair_30 The CBS do 99.5 1.2E-12 2.7E-17 109.8 12.9 108 237-347 2-115 (116)
48 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1.4E-12 3.1E-17 108.9 13.0 110 237-347 3-113 (114)
49 cd04636 CBS_pair_23 The CBS do 99.4 1.2E-12 2.6E-17 113.1 12.6 109 237-347 2-131 (132)
50 cd04589 CBS_pair_CAP-ED_DUF294 99.4 2.6E-12 5.6E-17 107.2 14.0 107 238-347 3-110 (111)
51 cd04620 CBS_pair_7 The CBS dom 99.4 2.2E-12 4.7E-17 108.3 13.5 108 238-347 3-114 (115)
52 cd04621 CBS_pair_8 The CBS dom 99.4 1.5E-12 3.3E-17 113.6 12.9 109 237-347 2-134 (135)
53 cd04622 CBS_pair_9 The CBS dom 99.4 3.3E-12 7.1E-17 106.7 14.1 109 237-347 2-112 (113)
54 cd04595 CBS_pair_DHH_polyA_Pol 99.4 3E-12 6.4E-17 106.6 13.7 106 237-347 3-109 (110)
55 cd04587 CBS_pair_CAP-ED_DUF294 99.4 3.4E-12 7.3E-17 106.6 13.9 109 237-347 2-112 (113)
56 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 3.2E-12 6.9E-17 105.9 13.5 105 237-347 3-108 (109)
57 COG2239 MgtE Mg/Co/Ni transpor 99.4 1.4E-12 3.1E-17 134.1 13.8 139 208-355 114-258 (451)
58 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 2.8E-12 6.1E-17 105.9 13.0 103 237-347 2-105 (106)
59 cd04629 CBS_pair_16 The CBS do 99.4 1.7E-12 3.6E-17 108.6 11.4 109 237-347 2-113 (114)
60 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 4.1E-12 9E-17 105.6 13.7 108 237-347 2-110 (111)
61 cd04635 CBS_pair_22 The CBS do 99.4 2.1E-12 4.6E-17 109.5 12.0 110 237-347 2-121 (122)
62 cd04614 CBS_pair_1 The CBS dom 99.4 2.1E-12 4.6E-17 105.7 11.4 94 237-347 2-95 (96)
63 PRK07807 inosine 5-monophospha 99.4 2.7E-12 5.8E-17 134.1 14.6 118 224-350 87-205 (479)
64 cd04609 CBS_pair_PALP_assoc2 T 99.4 4.4E-12 9.6E-17 105.1 13.1 107 237-347 2-109 (110)
65 cd04585 CBS_pair_ACT_assoc2 Th 99.4 4.7E-12 1E-16 106.8 13.3 109 237-347 2-121 (122)
66 cd04632 CBS_pair_19 The CBS do 99.4 4.9E-12 1.1E-16 108.5 13.5 110 237-347 2-127 (128)
67 cd04640 CBS_pair_27 The CBS do 99.4 3.4E-12 7.4E-17 109.4 12.3 109 238-347 3-125 (126)
68 PRK07107 inosine 5-monophospha 99.4 4.8E-12 1E-16 132.9 15.9 130 239-379 108-242 (502)
69 cd04586 CBS_pair_BON_assoc Thi 99.4 2.4E-12 5.1E-17 111.7 11.3 109 237-347 3-134 (135)
70 cd04610 CBS_pair_ParBc_assoc T 99.4 5.7E-12 1.2E-16 104.1 12.9 104 236-347 2-106 (107)
71 cd04599 CBS_pair_GGDEF_assoc2 99.4 4E-12 8.8E-17 104.6 11.9 102 237-347 2-104 (105)
72 PTZ00314 inosine-5'-monophosph 99.4 7.7E-12 1.7E-16 131.5 16.8 170 189-377 59-238 (495)
73 cd04601 CBS_pair_IMPDH This cd 99.4 4.7E-12 1E-16 105.1 12.0 105 237-347 3-109 (110)
74 cd04637 CBS_pair_24 The CBS do 99.4 5.7E-12 1.2E-16 106.9 12.8 109 237-347 2-121 (122)
75 cd04606 CBS_pair_Mg_transporte 99.4 3.6E-12 7.8E-17 106.1 11.0 102 241-349 2-109 (109)
76 PLN02274 inosine-5'-monophosph 99.4 1.1E-11 2.4E-16 130.4 17.2 172 190-377 64-245 (505)
77 cd04802 CBS_pair_3 The CBS dom 99.4 1.1E-11 2.5E-16 103.3 14.0 108 237-347 2-111 (112)
78 cd04602 CBS_pair_IMPDH_2 This 99.4 7.9E-12 1.7E-16 105.1 12.7 106 237-347 3-113 (114)
79 TIGR01137 cysta_beta cystathio 99.4 4.7E-12 1E-16 132.6 13.6 121 223-349 332-453 (454)
80 cd02205 CBS_pair The CBS domai 99.4 1.5E-11 3.4E-16 101.1 13.9 110 237-347 2-112 (113)
81 cd04594 CBS_pair_EriC_assoc_ar 99.4 1.1E-11 2.5E-16 102.4 12.6 98 240-347 5-103 (104)
82 cd04584 CBS_pair_ACT_assoc Thi 99.3 1.7E-11 3.6E-16 103.6 12.6 109 237-347 2-120 (121)
83 cd04633 CBS_pair_20 The CBS do 99.3 1.8E-11 4E-16 103.5 12.5 108 237-347 2-120 (121)
84 cd04638 CBS_pair_25 The CBS do 99.3 2.3E-11 4.9E-16 100.7 12.5 103 237-347 2-105 (106)
85 cd04625 CBS_pair_12 The CBS do 99.3 3.7E-11 8E-16 100.2 13.7 108 237-347 2-111 (112)
86 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.2E-11 4.9E-16 101.3 12.3 100 236-347 2-104 (105)
87 cd04634 CBS_pair_21 The CBS do 99.3 3.5E-11 7.5E-16 105.8 13.0 108 237-347 2-142 (143)
88 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.9E-11 4.2E-16 127.6 13.0 151 189-350 52-203 (475)
89 cd04598 CBS_pair_GGDEF_assoc T 99.3 4.8E-11 1E-15 100.6 12.2 109 237-347 2-118 (119)
90 TIGR00393 kpsF KpsF/GutQ famil 99.2 4.6E-11 1E-15 116.3 11.8 113 226-341 155-268 (268)
91 COG0517 FOG: CBS domain [Gener 99.2 2.5E-10 5.3E-15 95.7 13.4 108 236-346 7-117 (117)
92 COG2905 Predicted signal-trans 99.1 3.6E-10 7.8E-15 116.2 10.9 124 223-350 146-270 (610)
93 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.4E-09 3.1E-14 94.8 11.4 97 237-334 2-119 (133)
94 PRK14869 putative manganese-de 99.0 2.5E-09 5.5E-14 114.7 13.3 123 225-350 67-304 (546)
95 PF00571 CBS: CBS domain CBS d 98.9 8.8E-09 1.9E-13 75.6 7.5 56 296-351 1-57 (57)
96 PF00571 CBS: CBS domain CBS d 98.7 3.7E-08 8E-13 72.3 5.8 56 228-286 1-56 (57)
97 PRK10070 glycine betaine trans 98.7 3.2E-07 6.9E-12 94.4 14.0 120 226-352 274-395 (400)
98 KOG1764|consensus 98.6 2.8E-07 6E-12 94.0 11.9 116 237-353 238-362 (381)
99 TIGR01186 proV glycine betaine 98.5 1.9E-06 4.2E-11 87.5 14.1 105 240-351 254-359 (363)
100 KOG0474|consensus 98.5 2.4E-07 5.2E-12 96.4 6.6 127 223-351 579-749 (762)
101 KOG2550|consensus 98.4 9.1E-07 2E-11 88.0 9.4 170 189-377 71-248 (503)
102 TIGR03520 GldE gliding motilit 98.1 0.00075 1.6E-08 69.9 22.5 118 226-353 255-376 (408)
103 KOG0475|consensus 97.9 5E-05 1.1E-09 79.6 10.5 121 228-349 545-694 (696)
104 cd04603 CBS_pair_KefB_assoc Th 97.9 2.5E-05 5.3E-10 65.0 6.6 55 226-283 56-110 (111)
105 COG2524 Predicted transcriptio 97.9 3.1E-05 6.8E-10 73.1 7.6 89 294-386 172-262 (294)
106 TIGR00400 mgtE Mg2+ transporte 97.8 2.5E-05 5.4E-10 81.9 5.7 112 224-349 193-305 (449)
107 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.3E-05 1.2E-09 63.7 6.4 54 294-347 58-112 (113)
108 smart00116 CBS Domain in cysta 97.8 7.5E-05 1.6E-09 51.1 6.1 48 302-349 1-48 (49)
109 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 8.1E-05 1.8E-09 61.6 6.6 59 222-283 55-113 (114)
110 cd04641 CBS_pair_28 The CBS do 97.7 0.00019 4E-09 60.4 8.5 84 302-385 2-92 (120)
111 COG3448 CBS-domain-containing 97.7 1.7E-05 3.7E-10 76.1 2.3 55 294-348 245-300 (382)
112 KOG1764|consensus 97.7 0.00023 5.1E-09 72.8 10.4 119 233-351 159-287 (381)
113 cd04617 CBS_pair_4 The CBS dom 97.7 0.00025 5.5E-09 59.5 9.0 83 302-384 2-86 (118)
114 cd04608 CBS_pair_PALP_assoc Th 97.7 0.00024 5.3E-09 60.6 8.7 83 301-385 2-86 (124)
115 cd04597 CBS_pair_DRTGG_assoc2 97.7 0.00013 2.8E-09 61.3 6.9 55 226-283 58-112 (113)
116 cd04801 CBS_pair_M50_like This 97.7 7.4E-05 1.6E-09 62.1 5.2 58 225-283 56-113 (114)
117 cd04619 CBS_pair_6 The CBS dom 97.6 8.7E-05 1.9E-09 61.9 5.4 56 225-283 58-113 (114)
118 TIGR03415 ABC_choXWV_ATP choli 97.6 0.00033 7.2E-09 71.8 9.3 118 216-351 264-381 (382)
119 cd04618 CBS_pair_5 The CBS dom 97.6 0.00017 3.7E-09 59.0 5.9 46 238-283 52-97 (98)
120 cd04614 CBS_pair_1 The CBS dom 97.5 0.00026 5.6E-09 57.5 6.7 48 301-348 1-48 (96)
121 PRK05567 inosine 5'-monophosph 97.5 0.00035 7.7E-09 74.0 9.3 115 225-348 146-265 (486)
122 cd04640 CBS_pair_27 The CBS do 97.5 0.00013 2.8E-09 62.1 4.9 60 224-283 62-125 (126)
123 cd04607 CBS_pair_NTP_transfera 97.5 0.00026 5.6E-09 58.7 6.5 55 226-283 58-112 (113)
124 cd04629 CBS_pair_16 The CBS do 97.5 0.00034 7.4E-09 57.9 7.3 51 301-351 1-51 (114)
125 cd04630 CBS_pair_17 The CBS do 97.5 0.00055 1.2E-08 56.9 8.5 50 302-351 2-52 (114)
126 cd04623 CBS_pair_10 The CBS do 97.5 0.00068 1.5E-08 55.8 8.9 50 302-351 2-51 (113)
127 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.00033 7.2E-09 60.8 7.3 50 302-351 2-51 (133)
128 PRK07107 inosine 5-monophospha 97.5 0.00016 3.5E-09 76.5 6.3 62 223-285 158-219 (502)
129 PRK10892 D-arabinose 5-phospha 97.5 0.00038 8.3E-09 69.8 8.8 89 294-384 202-295 (326)
130 cd04620 CBS_pair_7 The CBS dom 97.5 0.00025 5.4E-09 58.9 6.2 56 225-283 57-114 (115)
131 PLN02274 inosine-5'-monophosph 97.5 0.00074 1.6E-08 71.6 11.2 63 224-287 161-223 (505)
132 PRK07807 inosine 5-monophospha 97.5 0.00042 9.2E-09 72.9 9.1 99 226-332 148-247 (479)
133 cd04613 CBS_pair_SpoIVFB_EriC_ 97.5 0.00053 1.1E-08 56.5 8.0 82 301-384 1-84 (114)
134 cd04589 CBS_pair_CAP-ED_DUF294 97.5 0.00068 1.5E-08 55.9 8.6 81 301-384 1-83 (111)
135 COG3620 Predicted transcriptio 97.4 0.00021 4.5E-09 62.9 5.2 73 278-352 50-123 (187)
136 cd04585 CBS_pair_ACT_assoc2 Th 97.4 0.00024 5.1E-09 59.3 5.4 57 224-283 65-121 (122)
137 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.0009 2E-08 55.6 8.9 81 302-384 2-84 (115)
138 TIGR01303 IMP_DH_rel_1 IMP deh 97.4 0.0012 2.5E-08 69.6 11.2 186 226-429 146-382 (475)
139 COG4175 ProV ABC-type proline/ 97.4 0.00034 7.3E-09 68.5 6.6 122 214-351 262-384 (386)
140 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00029 6.3E-09 59.3 5.4 57 224-283 67-123 (124)
141 cd04602 CBS_pair_IMPDH_2 This 97.4 0.00037 8.1E-09 58.0 5.9 57 226-283 57-113 (114)
142 cd04626 CBS_pair_13 The CBS do 97.4 0.00047 1E-08 56.8 6.4 55 225-283 56-110 (111)
143 cd04622 CBS_pair_9 The CBS dom 97.4 0.00042 9E-09 57.2 6.1 55 226-283 58-112 (113)
144 PRK11543 gutQ D-arabinose 5-ph 97.3 0.00081 1.8E-08 67.2 9.1 89 294-384 197-289 (321)
145 cd04615 CBS_pair_2 The CBS dom 97.3 0.0012 2.5E-08 54.6 8.6 81 302-384 2-84 (113)
146 cd04624 CBS_pair_11 The CBS do 97.3 0.0016 3.5E-08 53.6 9.4 51 302-352 2-52 (112)
147 cd04587 CBS_pair_CAP-ED_DUF294 97.3 0.00035 7.7E-09 57.7 5.4 55 226-283 58-112 (113)
148 cd04642 CBS_pair_29 The CBS do 97.3 0.00096 2.1E-08 56.6 8.2 50 302-351 2-51 (126)
149 cd04627 CBS_pair_14 The CBS do 97.3 0.0005 1.1E-08 58.1 6.2 51 229-282 71-121 (123)
150 cd04596 CBS_pair_DRTGG_assoc T 97.3 0.0004 8.7E-09 57.1 5.3 56 225-283 52-107 (108)
151 cd04582 CBS_pair_ABC_OpuCA_ass 97.3 0.00076 1.7E-08 55.0 6.9 77 301-384 1-77 (106)
152 cd04610 CBS_pair_ParBc_assoc T 97.3 0.00044 9.5E-09 56.5 5.4 56 225-283 51-106 (107)
153 cd04595 CBS_pair_DHH_polyA_Pol 97.3 0.00075 1.6E-08 55.5 6.8 56 224-283 54-109 (110)
154 cd04643 CBS_pair_30 The CBS do 97.3 0.00082 1.8E-08 55.7 7.1 50 302-351 2-51 (116)
155 cd04802 CBS_pair_3 The CBS dom 97.3 0.00069 1.5E-08 55.9 6.6 56 224-283 56-111 (112)
156 PRK01862 putative voltage-gate 97.3 0.00075 1.6E-08 73.1 8.6 89 294-384 447-538 (574)
157 PRK14869 putative manganese-de 97.3 0.00057 1.2E-08 73.5 7.6 59 294-352 68-127 (546)
158 smart00116 CBS Domain in cysta 97.3 0.00084 1.8E-08 45.7 5.7 47 238-285 2-48 (49)
159 cd04609 CBS_pair_PALP_assoc2 T 97.3 0.0011 2.3E-08 54.3 7.3 49 302-351 2-50 (110)
160 TIGR01137 cysta_beta cystathio 97.2 0.0012 2.7E-08 69.2 9.4 58 294-351 335-393 (454)
161 cd04601 CBS_pair_IMPDH This cd 97.2 0.00032 6.9E-09 57.6 4.0 56 225-283 53-109 (110)
162 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.00093 2E-08 54.8 6.8 57 224-283 54-110 (111)
163 cd02205 CBS_pair The CBS domai 97.2 0.0018 3.8E-08 52.5 8.3 81 302-384 2-84 (113)
164 cd04632 CBS_pair_19 The CBS do 97.2 0.0011 2.3E-08 56.3 7.2 49 302-350 2-50 (128)
165 cd04803 CBS_pair_15 The CBS do 97.2 0.0014 3E-08 54.9 7.8 50 302-351 2-51 (122)
166 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00091 2E-08 54.9 6.6 54 227-283 57-110 (111)
167 cd04625 CBS_pair_12 The CBS do 97.2 0.00064 1.4E-08 56.1 5.5 55 225-283 57-111 (112)
168 PTZ00314 inosine-5'-monophosph 97.2 0.0011 2.4E-08 70.2 8.5 61 224-285 157-217 (495)
169 cd04606 CBS_pair_Mg_transporte 97.2 0.00065 1.4E-08 55.9 5.5 57 225-284 52-108 (109)
170 cd04605 CBS_pair_MET2_assoc Th 97.2 0.0013 2.8E-08 54.0 7.3 80 301-384 2-81 (110)
171 cd04633 CBS_pair_20 The CBS do 97.2 0.00052 1.1E-08 57.5 4.8 57 223-283 64-120 (121)
172 COG0517 FOG: CBS domain [Gener 97.2 0.0012 2.6E-08 54.7 7.0 54 227-282 63-117 (117)
173 cd04631 CBS_pair_18 The CBS do 97.2 0.00063 1.4E-08 57.3 5.1 57 224-283 68-124 (125)
174 cd04621 CBS_pair_8 The CBS dom 97.2 0.00085 1.8E-08 58.1 6.0 56 224-283 79-134 (135)
175 TIGR00393 kpsF KpsF/GutQ famil 97.2 0.0017 3.8E-08 63.0 8.8 89 294-384 155-246 (268)
176 cd04636 CBS_pair_23 The CBS do 97.1 0.00085 1.9E-08 57.4 5.7 55 225-283 77-131 (132)
177 cd04583 CBS_pair_ABC_OpuCA_ass 97.1 0.00096 2.1E-08 54.5 5.7 55 226-283 54-108 (109)
178 cd04639 CBS_pair_26 The CBS do 97.1 0.00074 1.6E-08 55.6 5.0 55 226-283 56-110 (111)
179 cd04594 CBS_pair_EriC_assoc_ar 97.1 0.0013 2.7E-08 53.8 6.0 54 226-283 50-103 (104)
180 cd04584 CBS_pair_ACT_assoc Thi 97.1 0.00095 2.1E-08 55.8 5.3 57 223-283 64-120 (121)
181 cd04800 CBS_pair_CAP-ED_DUF294 97.1 0.0011 2.3E-08 54.6 5.5 55 225-283 56-110 (111)
182 cd04599 CBS_pair_GGDEF_assoc2 97.1 0.0012 2.5E-08 53.7 5.6 55 225-283 50-104 (105)
183 cd04635 CBS_pair_22 The CBS do 97.1 0.00098 2.1E-08 55.8 5.2 57 224-283 65-121 (122)
184 cd04598 CBS_pair_GGDEF_assoc T 97.1 0.0021 4.6E-08 53.5 7.3 49 301-350 1-50 (119)
185 cd04586 CBS_pair_BON_assoc Thi 97.0 0.0018 4E-08 55.6 6.6 50 302-351 3-52 (135)
186 cd04588 CBS_pair_CAP-ED_DUF294 97.0 0.0052 1.1E-07 50.3 8.9 81 301-384 1-81 (110)
187 cd04637 CBS_pair_24 The CBS do 97.0 0.0011 2.5E-08 55.5 4.9 54 227-283 68-121 (122)
188 cd04590 CBS_pair_CorC_HlyC_ass 96.9 0.0031 6.7E-08 51.8 7.0 50 302-351 2-52 (111)
189 PRK11573 hypothetical protein; 96.9 0.2 4.2E-06 52.1 21.5 105 237-353 263-372 (413)
190 cd04591 CBS_pair_EriC_assoc_eu 96.9 0.0037 8.1E-08 51.4 7.0 49 231-283 56-104 (105)
191 PRK15094 magnesium/cobalt effl 96.7 0.0049 1.1E-07 61.0 7.3 56 294-349 67-126 (292)
192 cd04634 CBS_pair_21 The CBS do 96.6 0.0051 1.1E-07 53.6 6.2 49 302-351 2-50 (143)
193 COG2905 Predicted signal-trans 96.6 0.0041 9E-08 65.0 6.3 74 207-286 194-270 (610)
194 TIGR01302 IMP_dehydrog inosine 96.5 0.0041 8.9E-08 65.3 6.1 60 225-286 142-201 (450)
195 COG1253 TlyC Hemolysins and re 96.5 0.63 1.4E-05 48.6 22.2 59 294-352 206-268 (429)
196 cd04638 CBS_pair_25 The CBS do 96.4 0.0069 1.5E-07 49.4 5.4 54 226-283 52-105 (106)
197 COG3263 NhaP-type Na+/H+ and K 96.2 0.009 2E-07 60.9 6.1 75 366-444 494-568 (574)
198 COG4536 CorB Putative Mg2+ and 96.2 1.3 2.8E-05 44.8 20.7 60 226-286 265-324 (423)
199 COG2239 MgtE Mg/Co/Ni transpor 96.1 0.0063 1.4E-07 63.4 4.9 63 223-288 193-255 (451)
200 COG4109 Predicted transcriptio 95.7 0.022 4.8E-07 56.5 6.3 62 223-287 246-307 (432)
201 PRK05326 potassium/proton anti 94.9 0.13 2.9E-06 55.6 9.7 66 366-442 496-561 (562)
202 KOG2550|consensus 94.7 0.036 7.7E-07 56.0 4.2 71 207-284 156-226 (503)
203 TIGR01186 proV glycine betaine 94.6 0.067 1.5E-06 54.6 6.3 58 226-287 302-359 (363)
204 COG1125 OpuBA ABC-type proline 93.9 0.38 8.1E-06 46.4 9.0 98 244-348 193-308 (309)
205 PRK10070 glycine betaine trans 92.5 0.25 5.5E-06 51.1 6.3 59 226-288 337-395 (400)
206 KOG0476|consensus 90.5 1.5 3.3E-05 47.9 9.5 61 223-285 585-646 (931)
207 COG4232 Thiol:disulfide interc 84.2 60 0.0013 35.1 16.8 94 191-287 459-566 (569)
208 TIGR03415 ABC_choXWV_ATP choli 78.5 4.2 9.1E-05 41.8 5.9 48 236-286 333-380 (382)
209 KOG0474|consensus 75.3 5.6 0.00012 42.9 5.7 54 229-285 693-746 (762)
210 COG4535 CorC Putative Mg2+ and 63.5 44 0.00095 32.0 8.3 90 227-320 134-228 (293)
211 PF01595 DUF21: Domain of unkn 62.7 1.1E+02 0.0025 27.1 15.4 6 145-150 107-112 (183)
212 TIGR00811 sit silicon transpor 53.8 5.2 0.00011 41.4 0.6 131 11-148 252-387 (545)
213 COG1125 OpuBA ABC-type proline 52.8 24 0.00052 34.4 4.8 60 224-284 247-308 (309)
214 KOG0476|consensus 52.3 14 0.0003 40.8 3.5 62 294-355 588-653 (931)
215 PF04459 DUF512: Protein of un 50.7 21 0.00046 33.3 4.1 63 323-387 126-195 (204)
216 PF01036 Bac_rhodopsin: Bacter 47.7 2.4E+02 0.0052 26.4 11.8 41 129-171 140-181 (222)
217 COG4175 ProV ABC-type proline/ 47.2 35 0.00076 34.3 5.1 49 237-287 336-384 (386)
218 KOG0475|consensus 40.6 53 0.0012 35.7 5.6 53 229-285 642-694 (696)
219 TIGR03279 cyano_FeS_chp putati 37.5 65 0.0014 33.7 5.6 62 324-387 349-417 (433)
220 PF09269 DUF1967: Domain of un 36.6 94 0.002 23.6 5.0 57 361-427 3-68 (69)
221 PF11131 PhrC_PhrF: Rap-phr ex 36.1 32 0.00069 22.6 1.9 25 22-48 5-29 (37)
222 PF05198 IF3_N: Translation in 35.1 61 0.0013 25.2 3.8 27 324-350 12-38 (76)
223 TIGR03595 Obg_CgtA_exten Obg f 33.9 1.5E+02 0.0033 22.4 5.8 60 361-427 3-68 (69)
224 PF03842 Silic_transp: Silicon 33.1 64 0.0014 33.2 4.5 123 13-144 38-164 (512)
225 PF13856 Gifsy-2: ATP-binding 32.7 51 0.0011 26.5 3.2 24 410-434 64-87 (95)
226 PF03563 Bunya_G2: Bunyavirus 31.9 1.5E+02 0.0033 28.7 6.6 26 154-179 210-235 (285)
227 COG2216 KdpB High-affinity K+ 30.9 70 0.0015 34.2 4.5 36 246-283 414-449 (681)
228 TIGR02123 TRAP_fused TRAP tran 30.4 3.9E+02 0.0085 29.4 10.5 103 29-139 345-449 (613)
229 PF14044 NETI: NETI protein 30.1 70 0.0015 23.4 3.1 21 240-260 3-23 (57)
230 PRK00568 carbon storage regula 29.9 87 0.0019 24.4 3.8 24 414-437 7-31 (76)
231 PF02599 CsrA: Global regulato 29.7 92 0.002 22.6 3.7 24 414-437 7-31 (54)
232 PF02674 Colicin_V: Colicin V 27.7 3.8E+02 0.0083 22.8 9.8 36 109-144 57-92 (146)
233 PF15284 PAGK: Phage-encoded v 27.3 81 0.0018 23.4 3.1 25 19-43 6-30 (61)
234 cd04406 RhoGAP_myosin_IXA RhoG 27.1 58 0.0013 29.8 2.9 51 365-415 33-84 (186)
235 cd07178 terB_like_YebE telluri 26.6 61 0.0013 26.3 2.6 27 196-222 3-29 (95)
236 PF14827 Cache_3: Sensory doma 25.4 66 0.0014 26.7 2.8 18 325-342 92-109 (116)
237 PF14451 Ub-Mut7C: Mut7-C ubiq 25.3 33 0.00071 27.1 0.8 51 367-423 25-75 (81)
238 PF15631 Imm-NTF2-2: NTF2 fold 25.1 1E+02 0.0022 23.4 3.4 32 344-375 4-39 (66)
239 PRK01712 carbon storage regula 24.9 1.4E+02 0.003 22.5 4.0 24 414-437 7-31 (64)
240 cd04380 RhoGAP_OCRL1 RhoGAP_OC 24.6 65 0.0014 30.3 2.9 49 365-415 68-121 (220)
241 cd04407 RhoGAP_myosin_IXB RhoG 24.2 67 0.0014 29.4 2.8 50 365-415 33-84 (186)
242 cd04390 RhoGAP_ARHGAP22_24_25 24.0 66 0.0014 29.6 2.7 51 365-415 40-91 (199)
243 PRK11388 DNA-binding transcrip 23.9 2.8E+02 0.006 30.5 8.0 89 248-341 62-162 (638)
244 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 23.6 67 0.0014 29.9 2.7 51 365-415 27-78 (206)
245 cd04382 RhoGAP_MgcRacGAP RhoGA 23.4 67 0.0014 29.6 2.6 51 365-415 35-86 (193)
246 PF06667 PspB: Phage shock pro 23.3 2.6E+02 0.0057 21.7 5.5 47 150-205 4-50 (75)
247 cd04372 RhoGAP_chimaerin RhoGA 23.0 62 0.0013 29.7 2.3 51 365-415 34-88 (194)
248 TIGR01565 homeo_ZF_HD homeobox 22.7 1.9E+02 0.0042 21.2 4.4 46 188-233 5-54 (58)
249 cd04403 RhoGAP_ARHGAP27_15_12_ 22.6 1E+02 0.0022 28.0 3.7 51 365-415 34-87 (187)
250 cd04388 RhoGAP_p85 RhoGAP_p85: 22.2 85 0.0018 29.2 3.1 50 365-415 33-83 (200)
251 PF11151 DUF2929: Protein of u 21.8 1.6E+02 0.0035 21.5 3.8 21 119-139 35-55 (57)
252 cd04389 RhoGAP_KIAA1688 RhoGAP 21.6 78 0.0017 28.9 2.7 50 365-415 40-90 (187)
253 TIGR00811 sit silicon transpor 21.5 1.6E+02 0.0035 30.9 5.1 126 13-148 38-167 (545)
254 cd04408 RhoGAP_GMIP RhoGAP_GMI 21.3 74 0.0016 29.4 2.5 51 365-415 34-85 (200)
255 PF05653 Mg_trans_NIPA: Magnes 21.2 4.9E+02 0.011 25.7 8.5 55 20-77 5-59 (300)
256 PRK09458 pspB phage shock prot 21.1 1.7E+02 0.0038 22.7 4.0 45 150-203 4-48 (75)
257 PF06808 DctM: DctM-like trans 21.0 6.4E+02 0.014 26.1 9.6 104 28-139 230-333 (416)
258 TIGR00202 csrA carbon storage 20.9 1.8E+02 0.0038 22.3 4.0 24 414-437 7-31 (69)
259 PF14163 SieB: Superinfection 20.2 5.8E+02 0.013 22.2 8.2 16 209-224 79-94 (151)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-86 Score=675.86 Aligned_cols=398 Identities=25% Similarity=0.423 Sum_probs=361.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2372 27 IFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFF 106 (447)
Q Consensus 27 l~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (447)
+++||||||+|+|++|+++.||+.++++|+++|++++++++||+++|+|+|+|||++|++++++++..... ++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~----~~--- 74 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMR----LY--- 74 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh---
Confidence 57899999999999999999999999999999999999999999999999999999999999876543211 11
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Q psy2372 107 SLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYK 186 (447)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~~~~rl~g~~~~ 186 (447)
+ ..+..++++++|+++++|||++||++|.+||+++|++++||+++++++++|++|+++++++.++|++|.++.
T Consensus 75 ~-------~~~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~ 147 (413)
T PRK11573 75 G-------DAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTD 147 (413)
T ss_pred h-------hhHHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 1 134567778899999999999999999999999999999999999999999999999999999999998764
Q ss_pred C--CCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEE
Q psy2372 187 K--NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV 264 (447)
Q Consensus 187 ~--~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV 264 (447)
. ...+|++||+.+++.+.+ .++++|++|++|+++|++.+|+|+|+||+++++++.+++++++++.+.+++|||+||
T Consensus 148 ~~~~~~~s~eEl~~lv~~~~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PV 225 (413)
T PRK11573 148 IVVSGALSKEELRTIVHESRS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVL 225 (413)
T ss_pred ccCCCCCCHHHHHHHHHHHhh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEE
Confidence 2 357899999999998876 589999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHH
Q psy2372 265 YKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344 (447)
Q Consensus 265 ~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~D 344 (447)
|+++.|+++|+++.||++....++.......+.+++|++.+||+++++.++++.|++++.|+|+|+||||++.|+||++|
T Consensus 226 y~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleD 305 (413)
T PRK11573 226 YRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVED 305 (413)
T ss_pred EcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHH
Confidence 99888999999999999976543222111345578899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-ccc--c-ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEE
Q psy2372 345 IIHSLIGDI-SNS--Y-QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFI 420 (447)
Q Consensus 345 Ile~i~gei-~e~--~-~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~ 420 (447)
|+|+++|+| ||+ + .+.+.+.++|+|+++|+++++|+++.+|++ +|+ ++|+|+|||+++++|++|++||+++
T Consensus 306 ilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~--l~~---~~~~Tl~G~i~~~lg~iP~~Ge~~~ 380 (413)
T PRK11573 306 ILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWH--LPE---DDARTVNGVILEALEEIPVAGTRVR 380 (413)
T ss_pred HHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCC--CCC---CCCeeHHHHHHHHhCcCCCCCCEEE
Confidence 999999999 874 2 345788899999999999999999999999 883 3799999999999999999999999
Q ss_pred EcCEEEEEEEeecCeeeEEEEEecC
Q psy2372 421 WKNIKIEVIDMNNNKIERLLVTILN 445 (447)
Q Consensus 421 ~~~~~f~v~~~~~~ri~~v~v~~~~ 445 (447)
++||+|+|.+++++||.+|++++.+
T Consensus 381 ~~~~~f~V~~~~~~rI~~v~v~~~~ 405 (413)
T PRK11573 381 IGEYDIDILDVQDNMIKQVKVTPVK 405 (413)
T ss_pred ECCEEEEEEEecCCeEEEEEEEECC
Confidence 9999999999999999999998754
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=8.5e-85 Score=668.10 Aligned_cols=401 Identities=25% Similarity=0.404 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 24 IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKI 103 (447)
Q Consensus 24 ~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~~~~~~ 103 (447)
++|+++||||||+|+|++|+++.|++.++++|+++|++++++++||+++|+|+|+|||++|++++++++..+... +
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~----~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNL----F 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 567899999999999999999999999999999999999999999999999999999999999998876654433 2
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2372 104 RFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNI 183 (447)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~~~~rl~g~ 183 (447)
..++ .+++++.++++++|+++++|||++||++|.+||++++++++||+++++++++|++|+++++++.+++++|.
T Consensus 78 ~~~~-----~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~ 152 (408)
T TIGR03520 78 GSFN-----TELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGK 152 (408)
T ss_pred hhcc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2111 22356677788999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372 184 KYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263 (447)
Q Consensus 184 ~~~~~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP 263 (447)
++ ..+|+||++.+++.+.++| ++++|++|++|+++|++++|+|+|+||.++++++.+++++++++.+.+++|||+|
T Consensus 153 ~~---~~~t~eEl~~lv~~~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~P 228 (408)
T TIGR03520 153 QK---SNISVDQLSQALELTDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIP 228 (408)
T ss_pred CC---CCCCHHHHHHHHHhHhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEE
Confidence 64 4589999999999999989 5899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHH
Q psy2372 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343 (447)
Q Consensus 264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~ 343 (447)
||+++.|+++|+++.+|++....+ .. .+++++|+++.+||+++++.++++.|++++.|+++|+||||+++|+||++
T Consensus 229 V~~~~~d~ivGiv~~kDll~~~~~-~~---~~l~~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~e 304 (408)
T TIGR03520 229 VYKETIDNITGVLYIKDLLPHLNK-KN---FDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLE 304 (408)
T ss_pred EEcCCCCceEEEEEHHHHHhHhcc-CC---CCHHHHcCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHH
Confidence 999877999999999999975532 22 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc-ccc--cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCC--cCCCCcccHhHHHHhhcCCCCCCCcE
Q psy2372 344 DIIHSLIGDI-SNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPV--KISRNYHTLAGFVMTFLGHIPKISEN 418 (447)
Q Consensus 344 DIle~i~gei-~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~--~~~~~~~Tl~G~i~~~lg~iP~~g~~ 418 (447)
|++|+++|++ ||+ +++.+.+.++|+|+++|+++++|+++.+|++ +|. +++++|+|+|||+++++||+|++||+
T Consensus 305 Dileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~--~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~ 382 (408)
T TIGR03520 305 DIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILKLE--EDMFDEVKGEAETLAGFLLEISGGFPKKGEK 382 (408)
T ss_pred HHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCHHHHHHHhCCC--ccccCCcCCCCccHHHHHHHHhCcCCCCCCE
Confidence 9999999999 874 5556788899999999999999999999998 652 11357999999999999999999999
Q ss_pred EEEcCEEEEEEEeecCeeeEEEEEe
Q psy2372 419 FIWKNIKIEVIDMNNNKIERLLVTI 443 (447)
Q Consensus 419 ~~~~~~~f~v~~~~~~ri~~v~v~~ 443 (447)
+.++||+|+|.+++++||.+|++++
T Consensus 383 ~~~~~~~f~V~~~~~~rI~~v~v~~ 407 (408)
T TIGR03520 383 ITFENFEFTIEAMDKKRIKQVKVTI 407 (408)
T ss_pred EEECCEEEEEEEccCCeEEEEEEEE
Confidence 9999999999999999999999976
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-86 Score=637.24 Aligned_cols=411 Identities=28% Similarity=0.485 Sum_probs=382.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSL 95 (447)
Q Consensus 16 ~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l 95 (447)
.|..++++++|+++||||||+|||++++||.|+++++++|+++||++.|++++|+++++|+++|||++|++++++++...
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~~ 81 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATILG 81 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHHH
Confidence 36678888999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 96 VASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTE 175 (447)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~ 175 (447)
-.+ + | ..++.++++++|+++++|+|++||++|+.|||+++...++++..+.++|+|++|+++++++
T Consensus 82 irl----~---G-------d~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~ 147 (423)
T COG4536 82 IRL----Y---G-------DAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITR 147 (423)
T ss_pred HHH----h---c-------cchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1 2 1246788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccCC--CCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHH
Q psy2372 176 SILDIFNIKYKK--NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK 253 (447)
Q Consensus 176 ~~~rl~g~~~~~--~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~ 253 (447)
.++|+||++.+. ....|.||++.++.+++++|...+.+++|+-+++++++++|.|+|+||.++..++.+++.+++++.
T Consensus 148 ~llrl~gi~~~~~~~~~~s~EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~q 227 (423)
T COG4536 148 RLLRLLGINLDQAVSQLSSKEELRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQ 227 (423)
T ss_pred HHHHHhCcCcccccccccCHHHHHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHH
Confidence 999999999875 467899999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC
Q psy2372 254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEY 333 (447)
Q Consensus 254 ~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~ 333 (447)
+.++.|+|+|+|+++.|+++|++|.||+++++.+.++....++..+.++|+|||+++++.+.|..|++++.|++.|||||
T Consensus 228 l~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY 307 (423)
T COG4536 228 LLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY 307 (423)
T ss_pred HhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence 99999999999999999999999999999999876644345566666899999999999999999999999999999999
Q ss_pred CCEEEEEeHHHHHHHHhccc-ccc--cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcC
Q psy2372 334 GELEGIITINDIIHSLIGDI-SNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLG 410 (447)
Q Consensus 334 G~~iGiVT~~DIle~i~gei-~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg 410 (447)
|.+.|+||+|||+||++|++ ||+ ..+.+.+.+||+|+++|+++++|+||.||++ +|+ ++..|++|++++++.
T Consensus 308 G~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~--Lp~---e~a~TinGLvle~le 382 (423)
T COG4536 308 GDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDWN--LPD---EDARTINGLVLEELE 382 (423)
T ss_pred CcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCCC--CCC---CcchhHHHHHHHHHH
Confidence 99999999999999999999 885 5667888999999999999999999999999 995 368999999999999
Q ss_pred CCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372 411 HIPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445 (447)
Q Consensus 411 ~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~ 445 (447)
+||+.|+.|+++|++|+|++++.|||++||+.+.+
T Consensus 383 ~IP~~~~~~~i~~~~~~Il~~~~N~I~~vri~~~~ 417 (423)
T COG4536 383 EIPEEGQAVRIGGYRIDILKVQENRIKQVKITPLK 417 (423)
T ss_pred hCCCCCeEEEEcCEEEEEEehhhcceeeEEEEecC
Confidence 99999999999999999999999999999999875
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=3.9e-80 Score=638.71 Aligned_cols=416 Identities=34% Similarity=0.648 Sum_probs=381.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSL 95 (447)
Q Consensus 16 ~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l 95 (447)
++..++++++|+++|||||++|+|++|++|.|+++++++|+++|+.++++.++|+.+++++|+|||+++++.|++++.++
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~~ 82 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPAL 82 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 96 VASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTE 175 (447)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~ 175 (447)
+..+.+++..++++ + ++.++++|+++++|||++||++|.++|++++++.+|++++++++++|++|+++.+++
T Consensus 83 ~~~l~~~~~~~~~~-----~---~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~ 154 (429)
T COG1253 83 AALLEPLLEALGLS-----A---ALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIAN 154 (429)
T ss_pred HHHHHHHhhhccch-----h---HHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877655543 1 223788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccCC--CCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHH
Q psy2372 176 SILDIFNIKYKK--NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK 253 (447)
Q Consensus 176 ~~~rl~g~~~~~--~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~ 253 (447)
.++|++|.++.. +...++++++ +++.+.+.|.++++|++|++|+++|++.+|+++|+||+++++++.+.+++++.+.
T Consensus 155 ~il~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~ 233 (429)
T COG1253 155 AILRLFGVEPVEEEALTSTEEELE-LVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIEL 233 (429)
T ss_pred HHHHHcCCCCCCccccCccHHHHH-HHHhHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHH
Confidence 999999988643 3456788888 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC
Q psy2372 254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEY 333 (447)
Q Consensus 254 ~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~ 333 (447)
+.+++|||+|||+++.|+++|++|.||++....+++. .......++++++||+++++.++|++||+++.|+|+|+|||
T Consensus 234 ~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 234 ILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--DLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred HHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--ccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 9999999999999888999999999999998876532 13344455799999999999999999999999999999999
Q ss_pred CCEEEEEeHHHHHHHHhccc-ccc---cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhc
Q psy2372 334 GELEGIITINDIIHSLIGDI-SNS---YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFL 409 (447)
Q Consensus 334 G~~iGiVT~~DIle~i~gei-~e~---~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~l 409 (447)
|++.|+||++||+|+++||+ ||+ +++.+.+.++++|+++|.++++|+++.+|++ +| ++++|+|+|||+++++
T Consensus 312 G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~--~~--~~~~~~Ti~G~v~~~l 387 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGID--LD--EEEDYDTIAGLVLSLL 387 (429)
T ss_pred CCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCC--Cc--ccCCcccHHHHHHHHh
Confidence 99999999999999999999 874 3567777766669999999999999999999 74 3568999999999999
Q ss_pred CCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecCC
Q psy2372 410 GHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446 (447)
Q Consensus 410 g~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~~ 446 (447)
||+|++||.+.+++++|+|++++++||++|+|+|.++
T Consensus 388 g~iP~~g~~~~~~~~~~~V~~~~~~rI~~v~i~~~~~ 424 (429)
T COG1253 388 GRIPKVGESVVIGGLRFEVLDMDGRRIDKVLIVRLKD 424 (429)
T ss_pred CcCCCCCCEEEEcCCeEEEEEccCCcEEEEEEEEcCC
Confidence 9999999999999999999999999999999998763
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=100.00 E-value=1.6e-51 Score=404.22 Aligned_cols=256 Identities=21% Similarity=0.423 Sum_probs=234.9
Q ss_pred HHHhcCccCCCCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhC
Q psy2372 178 LDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS 257 (447)
Q Consensus 178 ~rl~g~~~~~~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~ 257 (447)
.+++|.++ .|++||+.+++++.++|.++++|+++++++++|++.+|+++|+||.++++++.+++++++.+.+.++
T Consensus 24 ~~~~~~~~-----~t~eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~ 98 (292)
T PRK15094 24 SQLFHGEP-----KNRDELLALIRDSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIES 98 (292)
T ss_pred HHHcCCCC-----CCHHHHHHHHHhHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhc
Confidence 34566543 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEE
Q psy2372 258 SYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELE 337 (447)
Q Consensus 258 ~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~i 337 (447)
+|+++|||+++.|+++|+++.+|++.....+.. ...+.++|+++.++++++++.++++.|++++.+++||+||||+++
T Consensus 99 ~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~--~~~l~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~vi 176 (292)
T PRK15094 99 AHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE--AFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVS 176 (292)
T ss_pred CCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC--cCCHHHHcCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEE
Confidence 999999998766899999999999976543222 145899999999999999999999999999999999999999999
Q ss_pred EEEeHHHHHHHHhccc-ccc--c-ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCC
Q psy2372 338 GIITINDIIHSLIGDI-SNS--Y-QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIP 413 (447)
Q Consensus 338 GiVT~~DIle~i~gei-~e~--~-~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP 413 (447)
|+||++|++++++|+| ||+ . +..+.+.++|+|+++|+++++|+++.+|++ +|. ++|+|+|||+++++|++|
T Consensus 177 GiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~--l~~---~~~~Tl~G~i~~~l~~iP 251 (292)
T PRK15094 177 GLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTH--FSD---EEVDTIGGLVMQAFGHLP 251 (292)
T ss_pred EEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCC--CCC---CCCccHHHHHHHHhCcCC
Confidence 9999999999999999 874 2 345888999999999999999999999999 873 479999999999999999
Q ss_pred CCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372 414 KISENFIWKNIKIEVIDMNNNKIERLLVTILN 445 (447)
Q Consensus 414 ~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~ 445 (447)
++||+++|+||+|+|++++++||.+|+|++.+
T Consensus 252 ~~Gd~i~~~~~~f~V~~~~~~rI~~v~v~~~~ 283 (292)
T PRK15094 252 ARGETIDIDGYQFKVAMADSRRIIQVHVKIPD 283 (292)
T ss_pred CCCCEEEECCEEEEEEEccCCeEEEEEEEECC
Confidence 99999999999999999999999999998865
No 6
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-50 Score=365.16 Aligned_cols=258 Identities=23% Similarity=0.448 Sum_probs=240.4
Q ss_pred HHHHHhcCccCCCCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHH
Q psy2372 176 SILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKIL 255 (447)
Q Consensus 176 ~~~rl~g~~~~~~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~ 255 (447)
++.++|..+| -+++||..+++.+++.+.++++-+.|++++++..+.+|+|+|.||+++++++.+.++.+++..+.
T Consensus 22 L~~~~f~gEp-----knr~eLl~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~ii 96 (293)
T COG4535 22 LLSQLFHGEP-----KNREELLELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVII 96 (293)
T ss_pred HHHHHhcCCC-----cCHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHH
Confidence 3335555444 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCC
Q psy2372 256 DSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGE 335 (447)
Q Consensus 256 ~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~ 335 (447)
++.||||||+.++.|++.|++..|||++.+..+... ..+++++||..+||++..+...|+.||.++.|||+|+||||+
T Consensus 97 esaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~--F~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGg 174 (293)
T COG4535 97 ESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEP--FDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGG 174 (293)
T ss_pred HhccccCCcccCCchhhhhhhhHHHHHHHhcCCccc--ccHHHhcccceecccchhHHHHHHHHHhhcCceEEEEeccCC
Confidence 999999999998899999999999999987665443 789999999999999999999999999999999999999999
Q ss_pred EEEEEeHHHHHHHHhccc-ccc---cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCC
Q psy2372 336 LEGIITINDIIHSLIGDI-SNS---YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGH 411 (447)
Q Consensus 336 ~iGiVT~~DIle~i~gei-~e~---~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~ 411 (447)
+.|+||.+||+|.|+|+| ||+ ++..+.+.++++|.|.|.++|+|||+.||.+ +++ +++||+||++++.+|+
T Consensus 175 VsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~--FsD---eevDTIGGLVm~afGh 249 (293)
T COG4535 175 VSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTH--FSD---EEVDTIGGLVMQAFGH 249 (293)
T ss_pred eeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCC--CCh---hhhhhhhHHHHHHhcc
Confidence 999999999999999999 884 3556889999999999999999999999999 974 4799999999999999
Q ss_pred CCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372 412 IPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445 (447)
Q Consensus 412 iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~ 445 (447)
.|+.||++.++||.|+|...+.+|+..++++.++
T Consensus 250 LP~RGE~i~i~~~~FkV~~ADsRrv~~l~vt~~~ 283 (293)
T COG4535 250 LPARGEKIDIGGYQFKVARADSRRVIQLHVTVPD 283 (293)
T ss_pred CCCCCCEEEEcceEEEEeecccceEEEEEEecCC
Confidence 9999999999999999999999999999998775
No 7
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=100.00 E-value=9e-32 Score=247.30 Aligned_cols=182 Identities=32% Similarity=0.512 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 19 SLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVAS 98 (447)
Q Consensus 19 ~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~ 98 (447)
.++++++|+++|||||++|+|++++|+.+++.++++|+++++++.++++||+++++|+++||+++|++.++++...+...
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~ 81 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLASNL 81 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999998766554332
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 99 LTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESIL 178 (447)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~~~~ 178 (447)
++. +.+..++++++++++++|||++||++|.+||++++.+.+|++++++++++|+++++.++++.++
T Consensus 82 ~~~-------------~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~ 148 (183)
T PF01595_consen 82 FGP-------------WWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKIL 148 (183)
T ss_pred Hhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1356677788899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccCCCCCCCHHHHHHHHHhchhcCccchHH
Q psy2372 179 DIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIE 213 (447)
Q Consensus 179 rl~g~~~~~~~~~s~~el~~lv~~~~~~g~l~~~E 213 (447)
+.+|.+.+++..+|+||+++++++++++|.++++|
T Consensus 149 ~~~~~~~~~~~~~s~eel~~lv~~~~e~G~i~~~E 183 (183)
T PF01595_consen 149 KLFGIENEEDPAVSEEELRSLVEEGEEEGVIEEEE 183 (183)
T ss_pred HHhCCCccccCCCCHHHHHHHHHhHHHCCCCCCCC
Confidence 99998874467899999999999999999999876
No 8
>KOG2118|consensus
Probab=99.90 E-value=1.1e-24 Score=227.01 Aligned_cols=312 Identities=18% Similarity=0.278 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcc-----hHHHHHhhcCchhhHHHHHHHHHHHHHH-HHH
Q psy2372 16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIG-----ALSALILSENPIHFFSTVQIGITLISIF-NGA 89 (447)
Q Consensus 16 ~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~-----a~~~~~l~~~~~~~l~tilign~~~~~~-~~~ 89 (447)
++...-.+++|++++++|||.+.++++++...++.+.+.|+.. ++.+....++.+.+|+|.+++|.+++-+ +..
T Consensus 12 ~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~~~e~~L~i 91 (498)
T KOG2118|consen 12 MPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSIATEAVLPF 91 (498)
T ss_pred hhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhhccccccce
Confidence 3344445555999999999999999999999999999987543 5566777899999999999999888765 332
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2372 90 FGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKI 169 (447)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~ 169 (447)
... ... + ...++.+.+..++.||||+||+++.+|...++..+.|+.+++.++++|+.|+
T Consensus 92 ~~~--------~~~-----~--------~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p 150 (498)
T KOG2118|consen 92 FLD--------AES-----G--------ESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYP 150 (498)
T ss_pred eec--------ccc-----c--------ccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhhee
Confidence 211 000 0 1234556777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCCCCHHHHHHHHHhchhc---CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCC
Q psy2372 170 LTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDI---GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDN 246 (447)
Q Consensus 170 ~~~~~~~~~rl~g~~~~~~~~~s~~el~~lv~~~~~~---g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~t 246 (447)
++.. ...+|... +....+.++..++..+..+ |.+..+|..++.+++++.++.++++|+|-.+++.++.+..
T Consensus 151 ~~~~----d~~lg~~~--~~~~~~~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~ 224 (498)
T KOG2118|consen 151 FSKL----DTALGLNL--GEFLKRASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTK 224 (498)
T ss_pred hhhh----hhhhcccc--ccchhhHHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccc
Confidence 9876 33455432 3456678888888776543 5689999999999999999999999999999999999998
Q ss_pred HH-HHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCC
Q psy2372 247 IE-KNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKS 324 (447)
Q Consensus 247 l~-e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~ 324 (447)
+. +....+.++||||+||++.+..+.+|.+-...+++...........++.+.+ ++.+.+|++++..+.++.|++.+.
T Consensus 225 l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~ 304 (498)
T KOG2118|consen 225 LDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS 304 (498)
T ss_pred cchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhc
Confidence 85 8888888999999999998777788887777777765432222225566665 677899999999999999999999
Q ss_pred ceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc
Q psy2372 325 ELSLVIDEYGELEGIITINDIIHSLIGDI-SNS 356 (447)
Q Consensus 325 ~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~ 356 (447)
|++.|.. +...+|++|.+|+ +++++++ ||.
T Consensus 305 H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~ 335 (498)
T KOG2118|consen 305 HMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEE 335 (498)
T ss_pred eeEEEec-CCcceeeEeccch-hhhcceecccc
Confidence 9998876 6889999999999 8888888 763
No 9
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.80 E-value=2.6e-18 Score=178.96 Aligned_cols=171 Identities=18% Similarity=0.277 Sum_probs=148.8
Q ss_pred CCCCHHHHHHHHHhchhcCccch-----HHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372 189 DLITEEEIYKLFREGFDIGIFNK-----IEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263 (447)
Q Consensus 189 ~~~s~~el~~lv~~~~~~g~l~~-----~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP 263 (447)
..+|++|+..++..+...|.+++ +|++++++++++++. |. +++++++++++++++++.|.+++++++|
T Consensus 43 dtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~--~~~vtl~~~~tv~eal~~m~~~~~s~lp 115 (450)
T TIGR01302 43 DTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVKRAENG-----II--SDPVTISPETTVADVLELMERKGISGIP 115 (450)
T ss_pred CccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhccccCc-----ee--cCceEeCCCCCHHHHHHHHHHcCCCEEE
Confidence 46899999999999988999995 899999999987664 54 3667899999999999999999999999
Q ss_pred EEeCCC--CeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEE
Q psy2372 264 VYKKSI--SKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339 (447)
Q Consensus 264 V~~~~~--~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGi 339 (447)
|+|++. ++++|+|+.+|++... ... .+++++|+ +++++++++++.++++.|++++.+.+||+|++|+++|+
T Consensus 116 Vvd~~~~~~~lvGIVt~rDL~~~~--~~~---~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGi 190 (450)
T TIGR01302 116 VVEDGDMTGKLVGIITKRDIRFVK--DKG---KPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGL 190 (450)
T ss_pred EEeCCCCCCeEEEEEEHHHHhhhh--cCC---CCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEE
Confidence 998643 6999999999998642 122 67999997 78899999999999999999999999999999999999
Q ss_pred EeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHH
Q psy2372 340 ITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFD 378 (447)
Q Consensus 340 VT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~ 378 (447)
||++|+++++. .+...+.++|+|+|.|.+++.
T Consensus 191 VT~~DIl~~~~-------~~~~~~d~~g~l~V~aav~~~ 222 (450)
T TIGR01302 191 ITMKDIVKRRK-------FPHASKDENGRLIVGAAVGTR 222 (450)
T ss_pred EEhHHhhhccc-------CCcceEeCCCCEEEEEEecCc
Confidence 99999999862 234566788999999999873
No 10
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=99.78 E-value=1.7e-18 Score=137.96 Aligned_cols=78 Identities=33% Similarity=0.657 Sum_probs=67.6
Q ss_pred EecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcE--EEEcCEEEEEEEeecCeeeEEE
Q psy2372 363 FCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN--FIWKNIKIEVIDMNNNKIERLL 440 (447)
Q Consensus 363 ~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~--~~~~~~~f~v~~~~~~ri~~v~ 440 (447)
+.++|+|+++|+++++|+++.+|++ +|. ++|+|+|||+++++|++|++||+ +.+++++|+|.+++++||.+|+
T Consensus 2 ~~~~~~~~v~G~~~l~~l~~~~~~~--l~~---~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~~~V~~~~~~rI~~V~ 76 (81)
T PF03471_consen 2 KLDDGTYIVSGSTPLDDLNELLGLD--LPE---EDYDTLGGLILEQLGRIPEVGERVEIELENYEFEVLEMDGRRIRKVR 76 (81)
T ss_dssp EETTSEEEEETTSBHHHHHHHHTS---TTT---TTTSBHHHHHHHHHTSS--TTSEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred eEcCCEEEEEecCCHHHHHHHHCcC--CCc---cchhhHHHHHHHHcCCCCCCCeEEEEEcCCEEEEEEEeeCCEEEEEE
Confidence 6789999999999999999999999 984 47999999999999999999995 4555999999999999999999
Q ss_pred EEecC
Q psy2372 441 VTILN 445 (447)
Q Consensus 441 v~~~~ 445 (447)
+++.+
T Consensus 77 i~~~~ 81 (81)
T PF03471_consen 77 ITRLP 81 (81)
T ss_dssp EEE--
T ss_pred EEECC
Confidence 99864
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.9e-17 Score=156.33 Aligned_cols=208 Identities=13% Similarity=0.205 Sum_probs=155.7
Q ss_pred HHHHCHHHHHHHHhHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHhcCccCC-------------------CCC
Q psy2372 140 IAMQYSEKAASIISPLML-------FLLKLMGPF---VKILTISTESILDIFNIKYKK-------------------NDL 190 (447)
Q Consensus 140 la~~~p~~~~~~~~~~l~-------~~~~i~~P~---~~~~~~~~~~~~rl~g~~~~~-------------------~~~ 190 (447)
+.+-||..-|..+...+. -+.++++|+ +.++-..+-...++.+..... +..
T Consensus 123 ~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvg 202 (382)
T COG3448 123 LRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVG 202 (382)
T ss_pred hcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccC
Confidence 667788877777766654 233466776 333333333334444433211 124
Q ss_pred CCHHHHHHHHHhchhcC---------ccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcE
Q psy2372 191 ITEEEIYKLFREGFDIG---------IFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY 261 (447)
Q Consensus 191 ~s~~el~~lv~~~~~~g---------~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~ 261 (447)
++.+|+...+++..|-= .+.+.|.+-+.+ ++.+.++.|||+ +++++++.+++++++.+++.++++..
T Consensus 203 fs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R--~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ika 278 (382)
T COG3448 203 FSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRR--RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKA 278 (382)
T ss_pred CCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHH--HhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCccc
Confidence 78899999888765532 333444444433 467889999999 58999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEEhhhHHHHhHhCC-----CccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCC
Q psy2372 262 FPVYKKSISKIIGTLNTKTLFKKIISNR-----SIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGE 335 (447)
Q Consensus 262 iPV~~~~~~~ivGiv~~~DLl~~~~~~~-----~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~ 335 (447)
+||.|++ .+++|+|+.+|+........ ...+.+++.+|. ++.++.++++..+++..|.+.+.|..||+|+.|+
T Consensus 279 LPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~ 357 (382)
T COG3448 279 LPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK 357 (382)
T ss_pred ccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence 9999965 89999999999987432110 011267999997 7789999999999999999999999999999999
Q ss_pred EEEEEeHHHHHHHHhcc
Q psy2372 336 LEGIITINDIIHSLIGD 352 (447)
Q Consensus 336 ~iGiVT~~DIle~i~ge 352 (447)
++||||..|++.++...
T Consensus 358 lvGIvsQtDliaal~r~ 374 (382)
T COG3448 358 LVGIVSQTDLIAALYRN 374 (382)
T ss_pred EEEEeeHHHHHHHHHHH
Confidence 99999999999998753
No 12
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.73 E-value=2.4e-17 Score=171.90 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=136.1
Q ss_pred CCCCHHHHHHHHHhchhc------CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHh-----C
Q psy2372 189 DLITEEEIYKLFREGFDI------GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILD-----S 257 (447)
Q Consensus 189 ~~~s~~el~~lv~~~~~~------g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~-----~ 257 (447)
..++.+|+..++++..++ +.++++|++.+++++++++.+++++|+ +++.+++.++|++++++.+++ +
T Consensus 88 ~~l~~dd~~~ll~~l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~ 165 (449)
T TIGR00400 88 NEMNLDDVIDLLEEVPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKE 165 (449)
T ss_pred HcCChhHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCcc
Confidence 458899999999998887 579999999999999999999999998 578899999999999999985 2
Q ss_pred CCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC-CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCE
Q psy2372 258 SYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP-PLFIPETISTMQLLETFKKNKSELSLVIDEYGEL 336 (447)
Q Consensus 258 ~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~-~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~ 336 (447)
+...+||+|+ .++++|+++.+|++... .. .+++++|++ ++++++++++.++++.|++++...+||+|++|++
T Consensus 166 ~~~~v~Vvd~-~~~l~GvV~l~dLl~a~---~~---~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l 238 (449)
T TIGR00400 166 DIYTLYVTNE-SKHLKGVLSIRDLILAK---PE---EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL 238 (449)
T ss_pred ceeEEEEECC-CCeEEEEEEHHHHhcCC---CC---CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence 3345666664 48999999999998642 22 579999965 5689999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhccc
Q psy2372 337 EGIITINDIIHSLIGDI 353 (447)
Q Consensus 337 iGiVT~~DIle~i~gei 353 (447)
+|+||.+|+++.+..+.
T Consensus 239 vGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 239 VGIVTVDDIIDVIQSEA 255 (449)
T ss_pred EEEEEHHHHHHHHHhhh
Confidence 99999999999987654
No 13
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=4.9e-16 Score=144.56 Aligned_cols=128 Identities=22% Similarity=0.319 Sum_probs=116.7
Q ss_pred hhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChh
Q psy2372 218 SRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297 (447)
Q Consensus 218 ~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~ 297 (447)
..+.+..+.+|+++|+ +++.++.+++|++|+.+.+.+++++..||.|+ |+++|+++..|+..+..++.. +..++
T Consensus 164 ~~m~siPk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~--~~kV~ 237 (294)
T COG2524 164 SKMVSIPKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNL--DAKVS 237 (294)
T ss_pred eeeeecCcchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCc--cccHH
Confidence 4445667888999999 47889999999999999999999999999984 599999999999999987654 38899
Q ss_pred hhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 298 SAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 298 ~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++|+ +++++.+++.+.||++.|.+++...++|+|.+|+.+|+||+.||+..+.|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 9995 68999999999999999999999999999999999999999999999876
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.63 E-value=1e-14 Score=153.60 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=141.6
Q ss_pred CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372 189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263 (447)
Q Consensus 189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP 263 (447)
..+|++|+...+..+...|.|+ ++++++++++.++ +++|. .++.++++++++.++++.|.+++++++|
T Consensus 50 ~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lp 122 (486)
T PRK05567 50 DTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVV--TDPVTVTPDTTLAEALALMARYGISGVP 122 (486)
T ss_pred CCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhhhh-----hhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEE
Confidence 4689999999999888888888 4788899888775 45676 4677899999999999999999999999
Q ss_pred EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEe
Q psy2372 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIIT 341 (447)
Q Consensus 264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT 341 (447)
|+|+ .++++|+|+.+|++... +.. .++.++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||
T Consensus 123 Vvd~-~g~lvGiVt~~DL~~~~--~~~---~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT 196 (486)
T PRK05567 123 VVDE-NGKLVGIITNRDVRFET--DLS---QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLIT 196 (486)
T ss_pred EEcc-CCEEEEEEEHHHhhhcc--cCC---CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Confidence 9985 48999999999997542 122 57899994 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372 342 INDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF 377 (447)
Q Consensus 342 ~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i 377 (447)
.+|+++.+.. +...+..+++|.+.|.+..
T Consensus 197 ~~DLl~~~~~-------p~a~~d~~g~l~V~aai~~ 225 (486)
T PRK05567 197 VKDIEKAEEF-------PNACKDEQGRLRVGAAVGV 225 (486)
T ss_pred hHHhhhhhhC-------CCcccccCCCEEEEeeccc
Confidence 9999998631 1222345677888877773
No 15
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.61 E-value=3.5e-15 Score=144.32 Aligned_cols=123 Identities=24% Similarity=0.357 Sum_probs=112.2
Q ss_pred cccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc
Q psy2372 221 LKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI 300 (447)
Q Consensus 221 l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im 300 (447)
..-+-.+|+|+|+|..+..++..++++++..++..++||+||||+|+. .+++|+|+.||+..... . .++..+|
T Consensus 183 IKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~---~---t~ieKVM 255 (432)
T COG4109 183 IKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP---S---TTIEKVM 255 (432)
T ss_pred hhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC---C---ccHHHHh
Confidence 344567899999999999999999999999999999999999999965 89999999999987532 2 7899999
Q ss_pred -CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372 301 -QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350 (447)
Q Consensus 301 -~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ 350 (447)
+.|.++.+.+++..+.+.|--.+..+.||+|++.+++|+||++|+++.+-
T Consensus 256 tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 256 TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999974
No 16
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.56 E-value=7.6e-14 Score=116.37 Aligned_cols=110 Identities=33% Similarity=0.674 Sum_probs=96.6
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLL 316 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al 316 (447)
++.+++.++++.++.+.|.+++++.+||++++.++++|+++.+|+++...++... ..+.++++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~--~~~~~~~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEED--LDLRDLLRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCc--CCHHHHhcCCeecCCCCcHHHHH
Confidence 5778999999999999999999999999985437999999999999876543321 45777888889999999999999
Q ss_pred HHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
+.|.+++.+.+||+|++|+++|+||+.|++++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~~ 111 (111)
T cd04590 80 EEMRKERSHMAIVVDEYGGTAGLVTLEDILEE 111 (111)
T ss_pred HHHHhcCCcEEEEEECCCCEEEEeEHHHhhcC
Confidence 99999999999999998999999999999864
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.4e-13 Score=116.78 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=91.2
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-cCCChhhh------c-CCCeeeCC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-VNIDITSA------I-QPPLFIPE 308 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-~~~~v~~i------m-~~~~~V~~ 308 (447)
++.++++++++.++.+.|.+++++++||+++ .++++|+++.+|++....++... ...++.+. | .++.++++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 4678999999999999999999999999985 48999999999999765433211 01223332 2 34679999
Q ss_pred CCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 309 TISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 309 ~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999875
No 18
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.7e-13 Score=115.30 Aligned_cols=110 Identities=10% Similarity=0.175 Sum_probs=95.1
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh-CCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS-NRSIVNIDITSAI-QPPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~-~~~~~~~~v~~im-~~~~~V~~~~~l~~ 314 (447)
++.+++.++++.++.+.|.+++++.+||+|++ ++++|+++.+|+++.... +......++.++| +++.++++++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence 35678999999999999999999999999865 899999999999976543 1111225788998 56789999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+++.+.+||+|+.|+++|+||++|+++
T Consensus 81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999998899999999999875
No 19
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.4e-13 Score=115.36 Aligned_cols=108 Identities=15% Similarity=0.267 Sum_probs=92.6
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.+++.+.++.++.+.|.+++++.+||++++ ++++|+++.+|+++...++.. +.++.++| .++.++++++++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~--~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYE--TLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccccc--ccChhheeecCCcEECCCCcHHHH
Confidence 35678999999999999999999999999854 899999999999874322111 14688888 466789999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999874
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.8e-13 Score=114.94 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=94.4
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSAI-QPPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~im-~~~~~V~~~~~l~~ 314 (447)
++.+++.++++.++++.|.+++++.+||++++.++++|+++.+|+++.+.++. .....++.++| ++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 56789999999999999999999999999854379999999999998654322 21225688998 46789999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+++.+.+||+|+ |+++|+||++|++.
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999998 99999999999875
No 21
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.53 E-value=1.6e-13 Score=115.43 Aligned_cols=109 Identities=11% Similarity=0.205 Sum_probs=94.0
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHH
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLL 316 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al 316 (447)
+.++++++++.++.+.|.+.+++++||+|++ ++++|+++.+|+++...++......++.++| +++.++++++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l 81 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence 4578899999999999999999999999865 8999999999999876543221124588888 5678999999999999
Q ss_pred HHHHHcCCceEEEEcCC--CCEEEEEeHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEY--GELEGIITINDIIH 347 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~--G~~iGiVT~~DIle 347 (447)
+.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 99999999999999987 89999999999986
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.5e-13 Score=113.18 Aligned_cols=109 Identities=12% Similarity=0.287 Sum_probs=94.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-ccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-IVNIDITSAI-QPPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-~~~~~v~~im-~~~~~V~~~~~l~~ 314 (447)
++.+++.+.++.++.+.+.+++++++||++++ ++++|+++.+|+++.+..... ....++.++| +++.++++++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 80 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDE 80 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHH
Confidence 45678999999999999999999999999865 799999999999987654321 1125788999 56789999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+.+.+.+||+|+ |+++|+||.+|+++
T Consensus 81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 81 AMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999999987 99999999999975
No 23
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.7e-13 Score=112.91 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=86.2
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLL 316 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al 316 (447)
+++++++++++.++.+.|.+++++.+||+|++.++++|+++.+|+.+... +.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------~~~v~~~~~l~~a~ 65 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------LVSIHPERSLFDAA 65 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------eEEeCCCCcHHHHH
Confidence 57789999999999999999999999999864479999999999986421 67899999999999
Q ss_pred HHHHHcCCceEEEEcCC-CCEEEEEeHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEY-GELEGIITINDIIH 347 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle 347 (447)
+.|.+++.+.+||+|++ |+++|+||..|++.
T Consensus 66 ~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 66 LLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 99999999999999987 99999999999874
No 24
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=3.6e-13 Score=112.26 Aligned_cols=108 Identities=14% Similarity=0.302 Sum_probs=94.5
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.+++.+++++++.+.+.+.+++.+||++++ ++++|+++.+|+.+....+.. +.++.++| +++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence 45678999999999999999999999999854 899999999999987654332 25688888 567899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999875
No 25
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.50 E-value=2.9e-12 Score=138.02 Aligned_cols=126 Identities=13% Similarity=0.218 Sum_probs=107.1
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ- 301 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~- 301 (447)
++.++|+|+|++ +..+++++++++|+.+.+.+++++.+||+|++ ++++|+++.+|+.+...+++...+.++.++|+
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~ 520 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAHT 520 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence 456789999985 45689999999999999999999999999864 89999999999998654332222256889995
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC--CCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEY--GELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~--G~~iGiVT~~DIle~i~g 351 (447)
+++++++++++.++++.|.+++.+.+||+|++ |+++|+||++|+++.+..
T Consensus 521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 56899999999999999999999999999976 479999999999998753
No 26
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=1.9e-13 Score=137.03 Aligned_cols=123 Identities=13% Similarity=0.182 Sum_probs=104.8
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-C
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-P 302 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~ 302 (447)
...+|+++|++.+++.++++++++.++++.|.+++++.+||++++ ++++|+|+.+|+++....+......++.++|+ +
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCC
Confidence 567899999964578899999999999999999998888888754 89999999999987655432222257999995 6
Q ss_pred CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
+.++++++++.++++.|.+++.+.+||+| +|+++|+||..|++..
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 78999999999999999999999999998 4899999999999874
No 27
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=6.3e-13 Score=110.61 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=93.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.++++++++.++++.+.+++++++||++++ ++++|+++.+|+++....+. ..+.++| +++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~~ 77 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK----KSVEDIMTRNVITATPDEPIDVA 77 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc----cCHHHhcCCCCeEECCCCcHHHH
Confidence 56689999999999999999999999999854 89999999999987654432 3588888 577899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|++|++.|+||++|+.+
T Consensus 78 ~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 78 ARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999999864
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.9e-13 Score=114.35 Aligned_cols=110 Identities=16% Similarity=0.268 Sum_probs=94.8
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCChhhhc-CCCee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNIDITSAI-QPPLF 305 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~v~~im-~~~~~ 305 (447)
++.+++.++++.++.+.|.+++++++||++++ ++++|+++.+|++........ ....++.++| +++.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT 81 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence 56789999999999999999999999999865 899999999999876543220 1124688888 46789
Q ss_pred eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++++++.++++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 999999999999999999999999998899999999999875
No 29
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.49 E-value=1.7e-13 Score=118.88 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHhc------hhcCccchHH---HHHHhhhccc--CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCC
Q psy2372 190 LITEEEIYKLFREG------FDIGIFNKIE---YNLASRALKL--DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSS 258 (447)
Q Consensus 190 ~~s~~el~~lv~~~------~~~g~l~~~E---~~~i~~~l~l--~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~ 258 (447)
.+|++||.....-+ .+.|.+++.- +++++...+. ...+++.+|+ ++++++.+++++.+++++|+++|
T Consensus 18 GitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g 95 (187)
T COG3620 18 GITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKG 95 (187)
T ss_pred CCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHHHHHHHHHHcC
Confidence 35566665443322 2446666543 2333333232 3456789998 68999999999999999999999
Q ss_pred CcEEEEEeCCCCeEEEEEEhhhHHHHhHhC-CCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCE
Q psy2372 259 YNYFPVYKKSISKIIGTLNTKTLFKKIISN-RSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGEL 336 (447)
Q Consensus 259 ~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~-~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~ 336 (447)
+|.+||.++ |+++|-++.+|+.+...++ ......+++++|. +.++|+++.++..+-+++..+ +...|+ ++|++
T Consensus 96 ~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~ 170 (187)
T COG3620 96 ISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKV 170 (187)
T ss_pred CccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCce
Confidence 999999984 7999999999999988665 3333468999995 557999999999888877653 334455 68999
Q ss_pred EEEEeHHHHHHHHhc
Q psy2372 337 EGIITINDIIHSLIG 351 (447)
Q Consensus 337 iGiVT~~DIle~i~g 351 (447)
+||||..||+..+-|
T Consensus 171 vGIITk~DI~k~~~~ 185 (187)
T COG3620 171 VGIITKADIMKLLAG 185 (187)
T ss_pred EEEEeHHHHHHHHhc
Confidence 999999999998765
No 30
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4.7e-13 Score=113.35 Aligned_cols=110 Identities=12% Similarity=0.190 Sum_probs=94.2
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTM 313 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~ 313 (447)
+..++++++++.++++.|.+++.+.+||.|++ ++++|+++.+|+++....+......++.++|+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 35689999999999999999999999999854 78999999999998765333222356888885 467999999999
Q ss_pred HHHHHHHHcCCceEEEEcCC---CCEEEEEeHHHHHH
Q psy2372 314 QLLETFKKNKSELSLVIDEY---GELEGIITINDIIH 347 (447)
Q Consensus 314 ~al~~m~~~~~~~a~VvDe~---G~~iGiVT~~DIle 347 (447)
++++.|.+++.+.+||+|++ |+++|+||++|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999987 68999999999864
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4.9e-13 Score=113.91 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=94.8
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-----------cCCChhhhcC-CCe
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-----------VNIDITSAIQ-PPL 304 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-----------~~~~v~~im~-~~~ 304 (447)
++.+++++.++.++++.|.+++++++||++++.++++|+++.+|+++.+.++... ...++.++|+ +++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI 81 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence 4567899999999999999999999999986448999999999999866432210 1146888874 578
Q ss_pred eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++++++.++++.|++.+.+.+||+|++|+++|+||.+|+++
T Consensus 82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999999999999999999999998899999999999975
No 32
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=3.2e-13 Score=113.37 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=92.0
Q ss_pred ceEEEcCCCCHHHHHHHHHhCC-CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC---CeeeCCCCCH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSS-YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP---PLFIPETIST 312 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~-~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~---~~~V~~~~~l 312 (447)
++.++++++++.++.+.|.+++ .+.+||+|++ ++++|+++.+|+++...+... ..++.++|++ ++++++++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~--~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWA--QTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhcc--ccchhhhhcccccceEECCCCcH
Confidence 4568999999999999997765 8999999854 899999999999986643221 2568888853 5689999999
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 313 MQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 313 ~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
.++++.|++++.+.+||+|++|+++|++|.+|+++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999998899999999999864
No 33
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.48 E-value=2.3e-13 Score=136.10 Aligned_cols=122 Identities=14% Similarity=0.246 Sum_probs=105.5
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CC
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PP 303 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~ 303 (447)
..+|+++|++..++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+.+....+.. .+.++.++|+ ++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~-~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGA-LTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCC-cCCcHHHhcCCCC
Confidence 46899999864347899999999999999999999999999865 899999999999886644321 1256899995 56
Q ss_pred eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++.
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 789999999999999999999999999988999999999999864
No 34
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=4.6e-13 Score=111.39 Aligned_cols=105 Identities=18% Similarity=0.306 Sum_probs=93.3
Q ss_pred CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372 236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQ 314 (447)
Q Consensus 236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~ 314 (447)
.++.+++.+++++++.+.|.+++++++||++++ ++++|+++.+|++... .. .++.++| .++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~---~~---~~v~~~~~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD---PD---TTIEKVMTKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc---cc---ccHHHHhcCCCeEECCCCCHHH
Confidence 356789999999999999999999999999854 8999999999998642 11 5688998 56789999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999999999875
No 35
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.4e-13 Score=110.53 Aligned_cols=110 Identities=16% Similarity=0.311 Sum_probs=95.1
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.+++.+++++++.+.|.+.+++++||++++ ++++|+++.+|+++....+.. .+..+.++| ++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-CccCHHHhccCCCEEECCCCcHHHH
Confidence 34578999999999999999999999999865 899999999999887654322 225688887 567899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
++.|.+++...+||+|++|++.|++|.+|++++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~~ 112 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhccC
Confidence 999999899999999988999999999999863
No 36
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.48 E-value=5.5e-13 Score=111.33 Aligned_cols=110 Identities=22% Similarity=0.330 Sum_probs=95.0
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.++++++++.++.+.|.+++++.+||++++ ++++|+++.+|+.+...+.......++.++| +++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 45679999999999999999999999999865 8999999999998866443221125688888 467899999999999
Q ss_pred HHHHHHcCCceEEEEcC-CCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDE-YGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe-~G~~iGiVT~~DIle 347 (447)
++.|++.+.+.+||+|+ +|+++|++|.+|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999998 899999999999875
No 37
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=6.4e-13 Score=110.84 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=92.8
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++..++.+++++++++.|.+++++++||++++ ++++|+++.+|++........ ...++.++| +++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 45678999999999999999999999999854 899999999999876543211 124688888 466899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999998 99999999999875
No 38
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.47 E-value=1.2e-12 Score=108.88 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=93.7
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a 315 (447)
++..++.++++.++.+.|.+++++++||+++ ++++|+++.+|+++....+... .++.++|+ ++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~--~~v~~~~~~~~~~v~~~~~~~~~ 77 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLEL--AKVKDVMTKDVITIDEDEQLYDA 77 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccc--cCHHHHhcCCceEECCCCCHHHH
Confidence 4567899999999999999999999999984 7999999999999876543221 56888884 67899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 78 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 78 IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999998899999999999875
No 39
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.47 E-value=1.5e-12 Score=108.31 Aligned_cols=108 Identities=14% Similarity=0.314 Sum_probs=93.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.++++++++.++.+.|.+++++.+||+++ ++++|+++.+|+++....+.. ...++.++| ++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHH
Confidence 4567999999999999999999999999985 899999999999987644321 226788888 567889999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999998899999999999875
No 40
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=6.8e-13 Score=113.72 Aligned_cols=110 Identities=23% Similarity=0.344 Sum_probs=91.1
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCC-------------Chhhhc-CC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNI-------------DITSAI-QP 302 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~-------------~v~~im-~~ 302 (447)
++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++...++...... ...+.+ ++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 56789999999999999999999999999865 8999999999999865432211000 111334 56
Q ss_pred CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 789999999999999999999999999998899999999999875
No 41
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1e-12 Score=109.82 Aligned_cols=109 Identities=16% Similarity=0.326 Sum_probs=93.2
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHH
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLL 316 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al 316 (447)
...+++++++.++++.|.+++++++||++++ ++++|+++.+|+++...++......++.++| +++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 3568999999999999999999999999854 8999999999998754333211225688888 5678999999999999
Q ss_pred HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.|++++.+.+||+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999899999999999875
No 42
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.46 E-value=1.3e-12 Score=108.83 Aligned_cols=108 Identities=16% Similarity=0.317 Sum_probs=92.8
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.+++.+++++++.+.|.+++++++||+++ ++++|+++.+|+++....+......++.++| ++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEA 79 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHH
Confidence 4667999999999999999999999999984 8999999999998754332211225688888 577899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|++++.+.+||+|+ |+++|++|.+|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 80 LLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999987 99999999999874
No 43
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1e-12 Score=112.05 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=89.4
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc----c-----CCChhhhc-CCCeee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI----V-----NIDITSAI-QPPLFI 306 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~----~-----~~~v~~im-~~~~~V 306 (447)
++.+++.++++.++++.|.+++++++||+|++.++++|+++.+|+++...++... . .....++| .++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 4567899999999999999999999999985437899999999998865432110 0 01112345 456799
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHH
Q psy2372 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346 (447)
Q Consensus 307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIl 346 (447)
++++++.++++.|.+++.+.+||+|++|+++|+||++|+=
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999999999999999999973
No 44
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.1e-12 Score=111.11 Aligned_cols=110 Identities=22% Similarity=0.326 Sum_probs=94.5
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC---------ccCCChhhhc-CCCeee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS---------IVNIDITSAI-QPPLFI 306 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~---------~~~~~v~~im-~~~~~V 306 (447)
++.++++++++.++.+.|.+.+++++||++++ ++++|+++.+|+++....... ....++.++| +++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 35678999999999999999999999999864 899999999999986543211 0135788888 467899
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++++.++++.|++++.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998899999999999875
No 45
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=1.8e-12 Score=108.63 Aligned_cols=108 Identities=17% Similarity=0.313 Sum_probs=93.2
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHH
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLL 316 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al 316 (447)
.++++.++++.++++.|.+++++.+||++++ ++++|+++.+|+++...++.. .+.++.++|+ ++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-LDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-cCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 3578999999999999999999999999854 899999999999876654322 1256889995 567899999999999
Q ss_pred HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 82 ALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 9999999999999998899999999999874
No 46
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.45 E-value=4.7e-13 Score=114.94 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=93.4
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.++++++++.++++.|.+++++.+||++++ ++++|+++.+|+++...++......+++++| +++.++++++++.++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v 81 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKL 81 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHH
Confidence 56789999999999999999999999999854 8999999999999766543322337899999 567899999999999
Q ss_pred HHHHH---------HcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 316 LETFK---------KNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 316 l~~m~---------~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
.+.+. +.+.+.+||+|++|+++|+||..|++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 99653 23567778899889999999999998753
No 47
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.2e-12 Score=109.79 Aligned_cols=108 Identities=19% Similarity=0.372 Sum_probs=91.2
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc-----CCChhhhcC-CCeeeCCCC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV-----NIDITSAIQ-PPLFIPETI 310 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~-----~~~v~~im~-~~~~V~~~~ 310 (447)
++.+++.++++.++.+.|.+++++.+||+|++ ++++|+++.+|+++......... +.++.++|+ ++.++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 56789999999999999999999999999854 79999999999998764321100 256888886 578999999
Q ss_pred CHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 311 STMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 311 ~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.++++.|.+.+ .+||+|++|+++|++|+.|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998754 5899999999999999999875
No 48
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.45 E-value=1.4e-12 Score=108.88 Aligned_cols=110 Identities=16% Similarity=0.349 Sum_probs=94.5
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a 315 (447)
++.+++.++++.++.+.+.+++++++||++++ ++++|+++.+++++.+.+.......++.++|+ ++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEA 81 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence 45578999999999999998899999999854 89999999999998765433222246889985 57799999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 49
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.2e-12 Score=113.08 Aligned_cols=109 Identities=20% Similarity=0.366 Sum_probs=93.1
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccC--------------------CCh
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVN--------------------IDI 296 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~--------------------~~v 296 (447)
++.++++++++.++.+.+.+.+++++||+|++ ++++|+++.+|+++.......... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 45678999999999999999999999999864 899999999999987654321111 167
Q ss_pred hhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 297 TSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 297 ~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
.++| +++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8888 45789999999999999999999999999998 99999999999975
No 50
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.44 E-value=2.6e-12 Score=107.18 Aligned_cols=107 Identities=10% Similarity=0.180 Sum_probs=92.1
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHH
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLL 316 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al 316 (447)
...++.+.+++++++.|.+++++.+||+++ ++++|+++.+|+++....+......++.++|+ +..++++++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 457899999999999999999999999985 78999999999998664332212256888985 578999999999999
Q ss_pred HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999999999986 99999999999875
No 51
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.2e-12 Score=108.33 Aligned_cols=108 Identities=14% Similarity=0.306 Sum_probs=90.0
Q ss_pred eEEEcCCCCHHHHHHHHHhCC-CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCC--CCHH
Q psy2372 238 VNFINIDDNIEKNLIKILDSS-YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPET--ISTM 313 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~-~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~--~~l~ 313 (447)
+..++.+.++.++.+.|.+++ ++.+||.+ + ++++|+++.+|+++...++....+.++.++|+ ++++++++ +++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 457899999999999998888 67778776 3 79999999999998664432212256888885 56778876 7899
Q ss_pred HHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 314 ~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999875
No 52
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.5e-12 Score=113.56 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=93.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-----------------------cC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-----------------------VN 293 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-----------------------~~ 293 (447)
++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++........ ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 45678999999999999999999999999854 8999999999999876422110 02
Q ss_pred CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
.+++++|+ ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 46889985 5679999999999999999999999999987 99999999999986
No 53
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.3e-12 Score=106.67 Aligned_cols=109 Identities=15% Similarity=0.309 Sum_probs=92.1
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH-hHhCCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK-IISNRSIVNIDITSAI-QPPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~-~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~ 314 (447)
++.+++.++++.++.+.|.+++++.+||+++ ++++|+++.+|++.. ...+......++.++| +.+.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 79 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDE 79 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHH
Confidence 4568999999999999999999999999984 899999999999743 2222221123488888 46789999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|++++.+.+||+|++|+++|++|.+|+++
T Consensus 80 ~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 80 AARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
No 54
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=3e-12 Score=106.62 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=92.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.+++.+.++.++.+.|.+.+++++||+++ ++++|+++..|+++....+. ...++.++| +++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 4668999999999999999999999999985 89999999999987654322 226788998 567899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+| +|+++|+||+.|+++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999998 799999999999875
No 55
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.43 E-value=3.4e-12 Score=106.58 Aligned_cols=109 Identities=12% Similarity=0.252 Sum_probs=92.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc-CCChhhhcC-CCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV-NIDITSAIQ-PPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~-~~~v~~im~-~~~~V~~~~~l~~ 314 (447)
++.+++.+++++++.+.|.+++.+.+||+++ ++++|+++.+|+++......... ..++.++|+ ++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~ 79 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLE 79 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHH
Confidence 4567899999999999999999999999984 89999999999986443222111 156888884 5778999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 80 ~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 80 ALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 999999999999999998899999999999874
No 56
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.43 E-value=3.2e-12 Score=105.89 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=92.2
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++..++++.++.++.+.|.+++++.+||++++ ++++|+++.+|++..... . .++.++| .++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~--~---~~v~~~~~~~~~~v~~~~~~~~~ 76 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE--A---KSLEDIMLEDVFTVQPDASLRDV 76 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc--C---CcHhHhhcCCceEECCCCcHHHH
Confidence 45678999999999999999999999999864 899999999999875422 1 4578888 467899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+.+.+.+||+|++|+++|++|.+|+++
T Consensus 77 ~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 77 LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999999899999999999875
No 57
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.4e-12 Score=134.15 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=121.5
Q ss_pred ccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCC-----CcEEEEEeCCCCeEEEEEEhhhHH
Q psy2372 208 IFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSS-----YNYFPVYKKSISKIIGTLNTKTLF 282 (447)
Q Consensus 208 ~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~-----~s~iPV~~~~~~~ivGiv~~~DLl 282 (447)
.++++|++.++..+.+.+.+++.+|+ ++.++++++.|+++++..+++.+ ...+.|+|++ ++++|+++.++++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll 190 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLL 190 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHh
Confidence 47889999999999999999999999 68999999999999999999654 3466777754 7899999999998
Q ss_pred HHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccccc
Q psy2372 283 KKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISN 355 (447)
Q Consensus 283 ~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e 355 (447)
.... . ..++++|. .+.+|+++++..++.+.|++++.-.+||||++++++|+||.+|+++.+-.|-+|
T Consensus 191 ~a~~---~---~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~e 258 (451)
T COG2239 191 TAEP---D---ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATE 258 (451)
T ss_pred cCCc---H---hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHH
Confidence 6432 2 67999995 568999999999999999999999999999999999999999999988554333
No 58
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.42 E-value=2.8e-12 Score=105.89 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=90.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC-CeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP-PLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~-~~~V~~~~~l~~a 315 (447)
++.+++.+.+++++++.|.+++++.+||++++ ++++|+++.+|+++... .++.++|++ +.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG-------GCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc-------cchhhhcccCCEEECCCCCHHHH
Confidence 45678999999999999999999999999854 89999999999987421 247788864 4679999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999899999999999875
No 59
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.7e-12 Score=108.65 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=92.7
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC--CccCCChhhhcC-CCeeeCCCCCHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR--SIVNIDITSAIQ-PPLFIPETISTM 313 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~--~~~~~~v~~im~-~~~~V~~~~~l~ 313 (447)
++.+++.+.++.++.+.|.+++++++||++++ ++++|+++.+|+++...+.. .....++.++|+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV 80 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHH
Confidence 45678999999999999999999999999854 79999999999997654321 111256888884 667899999999
Q ss_pred HHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 314 ~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 9999999999999999997 99999999999975
No 60
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.42 E-value=4.1e-12 Score=105.56 Aligned_cols=108 Identities=15% Similarity=0.301 Sum_probs=92.8
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++..++.++++.++.+.|.+.+++++||+++ ++++|+++.+|+.+....+.. ...++.++| +++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc-cccCHHHhccCCCeEECCCCCHHHH
Confidence 4567999999999999999999999999985 899999999999986643221 112567777 567899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|++++.+.+||+|++|+++|++|..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999998899999999999875
No 61
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.1e-12 Score=109.46 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=92.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC----CC-----ccCCChhhhcC-CCeee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN----RS-----IVNIDITSAIQ-PPLFI 306 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~----~~-----~~~~~v~~im~-~~~~V 306 (447)
++.+++.++++.++++.|.+++++.+||+++ .++++|+++.+|+++..... .. ....++.++|+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeE
Confidence 4668999999999999999999999999985 48999999999998742110 00 01256888884 67889
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 99999999999999999999999999899999999999985
No 62
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=2.1e-12 Score=105.75 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=85.2
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLL 316 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al 316 (447)
++.+++++.++.++++.|.+++++.+||+|++ ++++|+++.+|+++.. .+.++++++++.+++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------~~~~v~~~~~l~~a~ 64 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------EVVTATKRTTVSECA 64 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------CcEEecCCCCHHHHH
Confidence 46689999999999999999999999999854 8999999999998632 177999999999999
Q ss_pred HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 317 ETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.|.+++.+.+||+|+.|+++|+||.+|++.
T Consensus 65 ~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 65 QKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999998899999999999875
No 63
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.41 E-value=2.7e-12 Score=134.11 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=102.9
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-C
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-P 302 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~ 302 (447)
+..+++++|. ++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.... .. .++.++|+ +
T Consensus 87 ~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~---~~---~~V~diMt~~ 157 (479)
T PRK07807 87 AWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD---RF---TQVRDVMSTD 157 (479)
T ss_pred hhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc---cC---CCHHHhccCC
Confidence 3466788997 467799999999999999999999999999854 8999999999996431 11 56999994 6
Q ss_pred CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372 303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350 (447)
Q Consensus 303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ 350 (447)
+.++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++...
T Consensus 158 ~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 158 LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 789999999999999999999999999998899999999999998543
No 64
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.41 E-value=4.4e-12 Score=105.07 Aligned_cols=107 Identities=19% Similarity=0.417 Sum_probs=89.5
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a 315 (447)
++.+++.++++.++.+.|.+++++++||+++ ++++|+++.+|+.+....+......++.++|+ ++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 79 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEEL 79 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHH
Confidence 3567899999999999999999999999984 89999999999998765433211256888884 56789999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|++ +. .+||+|++|+++|+||++|+++
T Consensus 80 ~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 80 SELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 999988 33 4788988899999999999874
No 65
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.40 E-value=4.7e-12 Score=106.79 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=93.1
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCChhhhcC-CCee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNIDITSAIQ-PPLF 305 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~v~~im~-~~~~ 305 (447)
++.+++.+.++.++++.|.+++++.+||+++ ++++|+++.+|+++....... ....++.++|+ ++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPIT 79 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeE
Confidence 4567899999999999999999999999985 899999999999986543210 01145778884 6789
Q ss_pred eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++++++.++++.|++++.+.+||+|++|+++|+||..|+++
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 80 VSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999999998899999999999975
No 66
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.9e-12 Score=108.50 Aligned_cols=110 Identities=16% Similarity=0.350 Sum_probs=91.6
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-------------CccCCChhhhc-CC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-------------SIVNIDITSAI-QP 302 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-------------~~~~~~v~~im-~~ 302 (447)
++..++.++++.++.+.|.+.+++.+||++++ ++++|+++.+|+.+.+.... ...+.++.++| ++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 45678999999999999999999999999865 89999999999986542210 01124688888 56
Q ss_pred CeeeCCCCCHHHHHHHHHHcCCceEEEEc--CCCCEEEEEeHHHHHH
Q psy2372 303 PLFIPETISTMQLLETFKKNKSELSLVID--EYGELEGIITINDIIH 347 (447)
Q Consensus 303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvD--e~G~~iGiVT~~DIle 347 (447)
++++++++++.++++.|.+++.+.+||++ +.|+++|+||++|+++
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 78999999999999999999999898884 4699999999999875
No 67
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.4e-12 Score=109.44 Aligned_cols=109 Identities=22% Similarity=0.341 Sum_probs=88.6
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH-----hHhC-CCccCCChhhhcCCCe---ee--
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK-----IISN-RSIVNIDITSAIQPPL---FI-- 306 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~-----~~~~-~~~~~~~v~~im~~~~---~V-- 306 (447)
+.+++.++++.++++.|.+++...+||++++ ++++|+++.+|+++. ..++ ....+.++.++|++.. .+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 4678999999999999999999999999854 899999999999862 2221 1111256889997532 22
Q ss_pred --CCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHH
Q psy2372 307 --PETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIH 347 (447)
Q Consensus 307 --~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle 347 (447)
++++++.++++.|.+++.+.+||+|+. |.++|+||++|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368999999999999999999999985 89999999999975
No 68
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=4.8e-12 Score=132.94 Aligned_cols=130 Identities=9% Similarity=0.071 Sum_probs=106.6
Q ss_pred EEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHH
Q psy2372 239 NFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTM 313 (447)
Q Consensus 239 ~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~ 313 (447)
.++++++|+.++++.|.+++++.+||+|++ .++++|+|+.+|+++.. ... +.+++++|+ +++++++++++.
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~~~---~~~V~dIMt~~~~~itv~~d~~l~ 183 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-MSL---DTKVKDFMTPFEKLVTANEGTTLK 183 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-cCC---CCCHHHHhCCCCCeEEECCCCcHH
Confidence 489999999999999999999999999852 47999999999997532 112 267999997 456889999999
Q ss_pred HHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHH
Q psy2372 314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDR 379 (447)
Q Consensus 314 ~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~ 379 (447)
++++.|.+++.+.+||+|++|+++|+||.+|+++.-. .+...+.+.++++|-+.+..++
T Consensus 184 eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~-------~P~a~~d~~grL~V~~av~~~~ 242 (502)
T PRK07107 184 EANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKE-------NPLELLDSSKRYVVGAGINTRD 242 (502)
T ss_pred HHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhccc-------ChhhhhhhccCeeeeeccChhh
Confidence 9999999999999999999899999999999998541 1222234567787777776654
No 69
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=2.4e-12 Score=111.70 Aligned_cols=109 Identities=15% Similarity=0.300 Sum_probs=92.5
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC----------------------CccCC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR----------------------SIVNI 294 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~----------------------~~~~~ 294 (447)
++.++++++++.++++.|.++++.++||++++ ++++|+++.+|+++....+. .....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 56789999999999999999999999999854 89999999999987532210 00125
Q ss_pred ChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 295 DITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 295 ~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.++|+ +++++++++++.++++.|++.+.+.+||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 6888884 578999999999999999999999999999 799999999999875
No 70
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=5.7e-12 Score=104.15 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=91.2
Q ss_pred CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372 236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQ 314 (447)
Q Consensus 236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~ 314 (447)
+++.+++.+.++.++++.|.+.+++.+||+++ ++++|+++.+|++... .. ..+.++|. ++.++++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~---~~---~~~~~~~~~~~~~v~~~~~l~~ 73 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD---PD---ETVEEIMSKDLVVAVPEMDIMD 73 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC---cc---ccHHHhCCCCCeEECCCCCHHH
Confidence 35678999999999999999888999999984 8999999999998631 11 46889885 5688999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|++++.+.+||+|++|+++|++|.+|+++
T Consensus 74 ~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 74 AARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999999999999975
No 71
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=4e-12 Score=104.65 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=89.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a 315 (447)
++.+++.++++.++++.|.+++++.+||++ + ++++|+++.+|+++... . .++.++|. ++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~---~---~~~~~~~~~~~~~v~~~~~l~~~ 73 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP---N---RLVADAMTREVVTISPEASLLEA 73 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc---c---CCHHHHccCCCEEECCCCCHHHH
Confidence 456789999999999999999999999997 4 89999999999987431 1 46888884 67799999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+++.+.+||+|+ |+++|+||.+|++.
T Consensus 74 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 74 KRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 99999999999999997 99999999999874
No 72
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.39 E-value=7.7e-12 Score=131.51 Aligned_cols=170 Identities=11% Similarity=0.180 Sum_probs=130.0
Q ss_pred CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372 189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263 (447)
Q Consensus 189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP 263 (447)
..+|+.++-..+...---|++. +++.+.++++.+.+ +.|. .+++++++++++.++.+.|.+++++.+|
T Consensus 59 ~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~~e-----~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vp 131 (495)
T PTZ00314 59 DTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFE-----NGFI--MDPYVLSPNHTVADVLEIKEKKGFSSIL 131 (495)
T ss_pred cccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccccc-----cccc--cCCeecCCCCCHHHHHHHHHHcCCcEEE
Confidence 4567777776665543334443 24556666665544 4565 3556899999999999999999999999
Q ss_pred EEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEE
Q psy2372 264 VYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEG 338 (447)
Q Consensus 264 V~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iG 338 (447)
|++++ .++++|+|+.+|+.... .. +.+++++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|
T Consensus 132 Vvd~~~~~gkLvGIVt~~DL~~~~--~~---~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG 206 (495)
T PTZ00314 132 ITVDGKVGGKLLGIVTSRDIDFVK--DK---STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA 206 (495)
T ss_pred EEeCCccCCeEEEEEEHHHHhhcc--cC---CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99853 37999999999997432 12 267999997 4678999999999999999999999999999999999
Q ss_pred EEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372 339 IITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF 377 (447)
Q Consensus 339 iVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i 377 (447)
+||++|+++... .+...+.++|+++|.+.+..
T Consensus 207 IIT~~DIl~~~~-------~p~a~~D~~GrL~Vgaavg~ 238 (495)
T PTZ00314 207 LVSRSDLKKNRG-------YPNASLDSNGQLLVGAAIST 238 (495)
T ss_pred EEEehHhhhccc-------CchhhhccCCCEEEEEEECC
Confidence 999999998752 12233456677888666653
No 73
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.39 E-value=4.7e-12 Score=105.07 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=90.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCC-CCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPE-TISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~-~~~l~~ 314 (447)
+...++.+.++.++.+.|.+++++++||++++ ++++|+++.+|++.... . +.++.++|+ ++.++.+ ++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~---~~~v~~~~~~~~~~~~~~~~~l~~ 76 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD--L---DKPVSEVMTPENLLTTVEGTSLEE 76 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc--C---CCCHHHhcccCceEEecCCCCHHH
Confidence 45678999999999999999999999999865 89999999999975421 1 257889985 3566666 999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|++++.+.+||+|++|+++|+||++|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 77 ALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999998899999999999875
No 74
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.7e-12 Score=106.90 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=92.4
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC----C------ccCCChhhhc-CCCee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR----S------IVNIDITSAI-QPPLF 305 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~----~------~~~~~v~~im-~~~~~ 305 (447)
++.+++.++++.++.+.|.+++++++||+|+ ++++|+++.+|+.+.+.... . ....++.++| +++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPIT 79 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCee
Confidence 4668999999999999999999999999984 89999999999987643210 0 0013577877 56789
Q ss_pred eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++++++.++++.|.+++.+.+||+|++|+++|++|+.|+++
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 80 VSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 999999999999999999999999998899999999999985
No 75
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=3.6e-12 Score=106.14 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=87.8
Q ss_pred EcCCCCHHHHHHHHHhCC-----CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372 241 INIDDNIEKNLIKILDSS-----YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQ 314 (447)
Q Consensus 241 v~~~~tl~e~~~~~~~~~-----~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~ 314 (447)
+++++++.++++.|.+++ +..+||++++ ++++|+++.+|+++.. .. .++.++++ ++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~---~~---~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD---PD---TPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC---Cc---chHHHHhCCCCeEEcCCCCHHH
Confidence 578899999999998877 3688999854 8999999999998631 11 56888885 5689999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
+++.|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 99999999999999999889999999999999763
No 76
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.38 E-value=1.1e-11 Score=130.36 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHhchhcCc----c-chHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEE
Q psy2372 190 LITEEEIYKLFREGFDIGI----F-NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV 264 (447)
Q Consensus 190 ~~s~~el~~lv~~~~~~g~----l-~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV 264 (447)
.+|+.++-..+...---|. . .++++..++++.+.+ .+ |+ ++++++++++++.++.+.|.+++++.+||
T Consensus 64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~---~g--mi--~dpvtV~pd~tV~dA~~lm~~~~~~~lpV 136 (505)
T PLN02274 64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR---VG--FV--SDPVVKSPSSTISSLDELKASRGFSSVCV 136 (505)
T ss_pred ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc---cc--cc--CCCeeeCCCCcHHHHHHHHHhcCCceEEE
Confidence 4566666655544321111 1 234456677766542 22 55 46779999999999999999999999999
Q ss_pred EeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEE
Q psy2372 265 YKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339 (447)
Q Consensus 265 ~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGi 339 (447)
+|++ .++++|+|+.+|+.... .. +.++.++|++ ..++++++++.++++.|.+++.+.+||+|+.|+++|+
T Consensus 137 vD~~~~~GklvGIVT~~DL~~v~--~~---~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGv 211 (505)
T PLN02274 137 TETGTMGSKLLGYVTKRDWDFVN--DR---ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDL 211 (505)
T ss_pred EeCCCcCCeEEEEEEHHHHhhcc--cc---CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEE
Confidence 9853 37999999999997543 12 2679999963 4699999999999999999999999999999999999
Q ss_pred EeHHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372 340 ITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF 377 (447)
Q Consensus 340 VT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i 377 (447)
||++|+++.+.-.. ...-.+.++|+++|.+.+..
T Consensus 212 ITr~DIlk~~~~p~----~~~~~~d~~~~l~vgaavg~ 245 (505)
T PLN02274 212 VTRTDVKRVKGYPK----LGKPSVGKDGKLLVGAAIGT 245 (505)
T ss_pred EEHHHHHHHhhCcC----ccccccCCCCCEEEEEEEcC
Confidence 99999999874210 00002246788999888765
No 77
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1.1e-11 Score=103.28 Aligned_cols=108 Identities=20% Similarity=0.295 Sum_probs=91.5
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSAIQ-PPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~im~-~~~~V~~~~~l~~ 314 (447)
++.++++++++.++++.|.+++++.+||+++ ++++|+++.+|+++....+. .....++.++|+ ++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNE 79 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHH
Confidence 4567899999999999999999999999985 49999999999998654321 111257889984 5678999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+++.+.+||+|++ +++|+||.+|+++
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 80 AAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 9999999999999999875 9999999999874
No 78
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.37 E-value=7.9e-12 Score=105.05 Aligned_cols=106 Identities=13% Similarity=0.238 Sum_probs=89.7
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCC--CCC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPE--TIS 311 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~--~~~ 311 (447)
++.+++.++++.++.+.|.+++++++||+|+. .++++|+++.+|++... . .. .+++++|+ ++..+.. +++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-~-~~---~~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-D-SE---TPLSEVMTPREVLVVAPTGIT 77 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-c-cC---CCHHHhcCCCceEEECCCCCC
Confidence 45678999999999999999999999999851 48999999999997532 2 11 45889995 3456644 999
Q ss_pred HHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 312 l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.++++.|++++.+.+||+|++|+++|+||++|+++
T Consensus 78 l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 78 LEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999998899999999999875
No 79
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.37 E-value=4.7e-12 Score=132.64 Aligned_cols=121 Identities=16% Similarity=0.301 Sum_probs=100.8
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ- 301 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~- 301 (447)
++.++++++|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++....+....+.++.++|+
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~ 408 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMSK 408 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence 677899999984 67799999999999999999999999999854 89999999999998765432222257899995
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
++.++++++++.++++.|.+++ .. ||+++|+++|+||++|+++.+
T Consensus 409 ~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 409 KFIQIGEGEKLSDLSKFLEKNS--SA-IVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCeEECCcCcHHHHHHHHHHCC--ee-EEEECCEEEEEEEHHHHHHhh
Confidence 4569999999999999998753 34 455579999999999999875
No 80
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.37 E-value=1.5e-11 Score=101.14 Aligned_cols=110 Identities=18% Similarity=0.311 Sum_probs=93.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++..++.+.++.++.+.+.+++++++||++++ ++++|+++.+|+.+............+.++| .++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 45678999999999999999999999999865 8999999999999877543321111256677 467899999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|.+.+.+.++|+|++|+++|++|.+|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999875
No 81
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.36 E-value=1.1e-11 Score=102.37 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=86.7
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHH
Q psy2372 240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLET 318 (447)
Q Consensus 240 ~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~ 318 (447)
++++++++.++++.+.+.+++++||+++ ++++|+++.+|+++... .++.++| .++.+++++.++.++++.
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~-------~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 5 KVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY-------GDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc-------cchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 6889999999999999999999999984 89999999999986421 3466777 457899999999999999
Q ss_pred HHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 319 FKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 319 m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
|.+++.+.+||+| +|+++|++|.+|+++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999998 499999999999875
No 82
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.34 E-value=1.7e-11 Score=103.62 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=91.7
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---------CccCCChhhhc-CCCeee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR---------SIVNIDITSAI-QPPLFI 306 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---------~~~~~~v~~im-~~~~~V 306 (447)
++.+++.++++.++.+.+.+++++++||+|++ ++++|+++.+|+.+...... .....++.++| .++.++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 35678999999999999999999999999865 89999999999987542110 01125688888 467789
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++++.++++.|.+++.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999987 99999999999975
No 83
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.8e-11 Score=103.50 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=91.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCChhhhc-CCCee
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNIDITSAI-QPPLF 305 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~v~~im-~~~~~ 305 (447)
++..++.++++.++.+.|.+++++++||+++ ++++|+++.+|+++....... ....++.++| +++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVIT 79 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceE
Confidence 4567899999999999999999999999984 899999999999876442110 0124688888 56789
Q ss_pred eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++++++.++++.|.+.+.+.+||+|+ |+++|++|.+|+++
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 80 IEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 999999999999999999999999998 99999999999975
No 84
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.3e-11 Score=100.65 Aligned_cols=103 Identities=20% Similarity=0.360 Sum_probs=89.3
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL 315 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a 315 (447)
++.++..+.++.++++.+.+.+++++||++++ ++++|+++.++++... .. .++.++| +++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~---~~---~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP---EE---EQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc---cc---chHHHHhcCCCceECCCCCHHHH
Confidence 46788999999999999999999999999865 8999999999998632 11 3577777 467889999999999
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++.|++++.+.+||+|+ |+++|++|.+|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 99999999999999985 89999999999875
No 85
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=3.7e-11 Score=100.19 Aligned_cols=108 Identities=11% Similarity=0.290 Sum_probs=90.6
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC-CCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN-RSIVNIDITSAIQ-PPLFIPETISTMQ 314 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~-~~~~~~~v~~im~-~~~~V~~~~~l~~ 314 (447)
++.+++.++++.++.+.|.+++++.++|.+ + ++++|+++.+|+++..... ......++.++|+ ++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 79 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDE 79 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHH
Confidence 466899999999999999888888888775 4 8999999999999876432 1111256889995 4678999999999
Q ss_pred HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
+++.|.+++.+.+||+|+ |+++|+||.+|++.
T Consensus 80 a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 80 VRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence 999999999999999985 99999999999875
No 86
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.32 E-value=2.2e-11 Score=101.27 Aligned_cols=100 Identities=24% Similarity=0.310 Sum_probs=87.8
Q ss_pred CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCH
Q psy2372 236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETIST 312 (447)
Q Consensus 236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l 312 (447)
.+...++++++++++.+.+.+.+++++||+++. .++++|+++.+|+.+...+ +| +++.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-----------~m~~~~~~v~~~~~l 70 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-----------YIDPSPFTVSPRTSL 70 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-----------hccCCCceECCCCcH
Confidence 456789999999999999999999999999852 4899999999999876532 56 467799999999
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 313 MQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 313 ~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
.++++.|++++.+.+||++ +|+++|+||++|+++
T Consensus 71 ~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 71 EKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 9999999999999999995 699999999999875
No 87
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.5e-11 Score=105.81 Aligned_cols=108 Identities=20% Similarity=0.316 Sum_probs=92.0
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC--------------------------
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-------------------------- 290 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-------------------------- 290 (447)
++++++.++++.++.+.|.+.+++.+||+++ ++++|+++.+|+++.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 4568999999999999999999999999984 899999999999876543210
Q ss_pred ------ccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 291 ------IVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 291 ------~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
....++.++| +++.++++++++.++++.|++++.+.+||+|+ |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0124577777 56789999999999999999999999999987 99999999999875
No 88
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.30 E-value=1.9e-11 Score=127.55 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=115.1
Q ss_pred CCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC
Q psy2372 189 DLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS 268 (447)
Q Consensus 189 ~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~ 268 (447)
..+|+.++...+...-.-|+++++.. .-+..-.+...++.++|.+ +.+++++++++.++.+.|.+++++.+||+|+
T Consensus 52 dtvTe~~MAi~~A~~GGigvIh~n~~-i~~qae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~- 127 (475)
T TIGR01303 52 TAVAGRRMAETVARRGGIVILPQDLP-IPAVKQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE- 127 (475)
T ss_pred hhhHHHHHHHHHHHCCCEEEEeCCCC-HHHHHHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-
Confidence 45677776655544333344443211 1111122335667788874 5678999999999999999999999999874
Q ss_pred CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 269 ~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
++++|+|+.+|+.... .. .++.++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus 128 -gklvGIVT~rDL~~~~---~~---~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 128 -DRPVGLVTDSDLLGVD---RF---TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred -CEEEEEEEHHHhhcCC---CC---CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 6899999999985431 11 56999994 6789999999999999999999999999998899999999999998
Q ss_pred HHh
Q psy2372 348 SLI 350 (447)
Q Consensus 348 ~i~ 350 (447)
...
T Consensus 201 ~~~ 203 (475)
T TIGR01303 201 ATI 203 (475)
T ss_pred HHh
Confidence 653
No 89
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=4.8e-11 Score=100.62 Aligned_cols=109 Identities=13% Similarity=0.229 Sum_probs=88.6
Q ss_pred ceEEEcCCCCHHHHHHHHHhCC-CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---CccCCChhhhcC-CCeeeCCCCC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSS-YNYFPVYKKSISKIIGTLNTKTLFKKIISNR---SIVNIDITSAIQ-PPLFIPETIS 311 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~-~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---~~~~~~v~~im~-~~~~V~~~~~ 311 (447)
++.+++.++++.++.+.+.+.+ ++.+||+++ ++++|+++.+|+++...... ...+.++.++|+ ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 79 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTP 79 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCC
Confidence 3457899999999999998887 899999985 89999999999987543210 001256889995 5678999999
Q ss_pred HHHHHHHHHHcCCc---eEEEEcCCCCEEEEEeHHHHHH
Q psy2372 312 TMQLLETFKKNKSE---LSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 312 l~~al~~m~~~~~~---~a~VvDe~G~~iGiVT~~DIle 347 (447)
+.++++.|.+++.+ ..+|+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 80 LEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 99999999988753 4468888899999999999875
No 90
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.25 E-value=4.6e-11 Score=116.33 Aligned_cols=113 Identities=13% Similarity=0.259 Sum_probs=97.3
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCe
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPL 304 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~ 304 (447)
++|+++|.+. ++.++++++++.++++.|.+.+++.+||+|++ ++++|+++.+|+++....+.. .+.+++++|+ ++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~-~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGS-LKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCc-ccCcHHHhCCCCCe
Confidence 6799999853 26789999999999999999999999999855 899999999999986543221 2367999995 567
Q ss_pred eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEe
Q psy2372 305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIIT 341 (447)
Q Consensus 305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT 341 (447)
++++++++.++++.|.+++.+.+||+|+.|+++|+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 9999999999999999999999999999899999985
No 91
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.22 E-value=2.5e-10 Score=95.72 Aligned_cols=108 Identities=19% Similarity=0.375 Sum_probs=95.1
Q ss_pred CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372 236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQ 314 (447)
Q Consensus 236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~ 314 (447)
.++.++.++.++.++...|.+++++.+||.++ ++++|+++.+|++++...+... ..++.++|. ++.+++++.++.+
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~ 83 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEE 83 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCc-cccHHHhccCCcEEECCCCCHHH
Confidence 57789999999999999999999999999974 3799999999999988765431 015889996 7789999999999
Q ss_pred HHHHHHH-cCCceEEEEcCCC-CEEEEEeHHHHH
Q psy2372 315 LLETFKK-NKSELSLVIDEYG-ELEGIITINDII 346 (447)
Q Consensus 315 al~~m~~-~~~~~a~VvDe~G-~~iGiVT~~DIl 346 (447)
+.+.|.+ ++.+.+||+|+.+ +++|++|..|++
T Consensus 84 ~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 84 ALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 9999999 6999999999885 999999999973
No 92
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.11 E-value=3.6e-10 Score=116.15 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=107.9
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ- 301 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~- 301 (447)
+--.+++++|+ ...+++++.+++.+|.++|.+.|.+.+.+++++ +...|||+.+|+......+..+...++.++|+
T Consensus 146 ~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~ 222 (610)
T COG2905 146 FILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS 222 (610)
T ss_pred HHHHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhcc
Confidence 33457888888 456689999999999999999999988888855 89999999999998876654445578999995
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ 350 (447)
|+++|..+.-+.||+-.|.+++++.+||.+ +|+++|+||+.||+...-
T Consensus 223 p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 223 PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 778999999999999999999999999996 699999999999998753
No 93
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.07 E-value=1.4e-09 Score=94.78 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=78.9
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccC-----------CChhhhc-----
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVN-----------IDITSAI----- 300 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~-----------~~v~~im----- 300 (447)
++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|++++......... ..+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 56789999999999999999999999999865 899999999999987654322100 0123344
Q ss_pred -----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC
Q psy2372 301 -----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYG 334 (447)
Q Consensus 301 -----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G 334 (447)
++++++++++++.++++.|.+++.+.+||+|+.+
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 3578999999999999999999999999999754
No 94
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.02 E-value=2.5e-09 Score=114.67 Aligned_cols=123 Identities=14% Similarity=0.179 Sum_probs=103.5
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---------------
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR--------------- 289 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~--------------- 289 (447)
..+|+++|++ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+...+..
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i 143 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENI 143 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHH
Confidence 3579999984 67799999999999999999999999999865 89999999999987433210
Q ss_pred ----------------------------------------------C---------------------------------
Q psy2372 290 ----------------------------------------------S--------------------------------- 290 (447)
Q Consensus 290 ----------------------------------------------~--------------------------------- 290 (447)
.
T Consensus 144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~ 223 (546)
T PRK14869 144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKE 223 (546)
T ss_pred HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHh
Confidence 0
Q ss_pred -------------------ccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 291 -------------------IVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 291 -------------------~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
....+++++|+ ++.++++++++.++.+.|.+++.+.+||+|++|+++|+||..|+++..
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV 303 (546)
T ss_pred CCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence 01135677886 578999999999999999999999999999999999999999999854
Q ss_pred h
Q psy2372 350 I 350 (447)
Q Consensus 350 ~ 350 (447)
-
T Consensus 304 ~ 304 (546)
T PRK14869 304 R 304 (546)
T ss_pred c
Confidence 3
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.87 E-value=8.8e-09 Score=75.63 Aligned_cols=56 Identities=30% Similarity=0.495 Sum_probs=51.7
Q ss_pred hhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 296 ITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 296 v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++++|+ +++++++++++.++++.|++++.+.+||+|++|+++|++|.+|+++.+.+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHHG
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhhC
Confidence 467885 77899999999999999999999999999999999999999999998764
No 96
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.69 E-value=3.7e-08 Score=72.29 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=51.3
Q ss_pred eceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372 228 AITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII 286 (447)
Q Consensus 228 V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~ 286 (447)
|+++|++ ++.++++++++.++.+.|.+++++++||+|++ ++++|+++.+|+++++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 5789985 78899999999999999999999999999866 99999999999998764
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.2e-07 Score=94.35 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=96.2
Q ss_pred eeeceeeeeCCc-eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCC
Q psy2372 226 QCAITLMTPRMK-VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPP 303 (447)
Q Consensus 226 ~~V~dvM~pr~~-v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~ 303 (447)
.++.++|.+... ......+.+..++++.|.+.+.++..|+|++ +++.|+++.+++.+...++ ..+.+.+ ...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ 347 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----QGLDAALIDAP 347 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----CchhhhhccCC
Confidence 466778853221 1234466788999999999999999999865 8999999999998765422 3466666 456
Q ss_pred eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372 304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352 (447)
Q Consensus 304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge 352 (447)
.++++++++.+++..+.+.... +||+|+.|+++|+||..+++..+.+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 7999999999999999987766 89999999999999999999998653
No 98
>KOG1764|consensus
Probab=98.62 E-value=2.8e-07 Score=94.04 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=96.7
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-cCCC-hhhhc-------CCCeeeC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-VNID-ITSAI-------QPPLFIP 307 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-~~~~-v~~im-------~~~~~V~ 307 (447)
++..+..++++.++++.|.+.+.+.+||++.+ ++.+|.++..|+.....++.-. .... +.... .+++++.
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence 58899999999999999999999999999976 6669999999999876543211 1112 22221 2357899
Q ss_pred CCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372 308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353 (447)
Q Consensus 308 ~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei 353 (447)
++.++.+++..|.+++.|.+.|||+.|.++|+||+.|++..++-.-
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999998653
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.50 E-value=1.9e-06 Score=87.53 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=89.6
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHH
Q psy2372 240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLET 318 (447)
Q Consensus 240 ~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~ 318 (447)
....+.+..++++.+...+.+...|++++ +++.|+++.+++..+.... ..+.+.+ ....++++++++.+++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (363)
T TIGR01186 254 TKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----QGLQDVLIDDIYTVDAGTLLRETVRK 327 (363)
T ss_pred eecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----CchhhhhccCCceECCCCcHHHHHHH
Confidence 45567788999999999999999999855 8999999999998765432 3466666 456799999999999999
Q ss_pred HHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 319 FKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 319 m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
|.+++.. +||+|+.|+++|+||..++++.+.+
T Consensus 328 ~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 328 VLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 9999888 9999999999999999999999865
No 100
>KOG0474|consensus
Probab=98.47 E-value=2.4e-07 Score=96.40 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=101.3
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCC----CeEEEEEEhhhHHHHhHhC----C--C--
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI----SKIIGTLNTKTLFKKIISN----R--S-- 290 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~----~~ivGiv~~~DLl~~~~~~----~--~-- 290 (447)
+++.+++|+|++ ++++++.-+.+..+.+.++.+.|+.|||+|+.. +++.|++-...++..+.+. + .
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~ 656 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTF 656 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcccc
Confidence 456789999995 899999999999999999999999999998643 4678988888887544321 0 0
Q ss_pred -----------------c-------------cCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEE
Q psy2372 291 -----------------I-------------VNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339 (447)
Q Consensus 291 -----------------~-------------~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGi 339 (447)
+ .-.++..+|. .|++|+++|++..++..||.-+.+...|++...+.+|+
T Consensus 657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI 736 (762)
T ss_pred CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence 0 0013344553 47899999999999999999999999999998999999
Q ss_pred EeHHHHH-HHHhc
Q psy2372 340 ITINDII-HSLIG 351 (447)
Q Consensus 340 VT~~DIl-e~i~g 351 (447)
+|++|+. +.+.|
T Consensus 737 lTR~D~~~~~~l~ 749 (762)
T KOG0474|consen 737 LTRKDLARYRILG 749 (762)
T ss_pred EehhhhhhHHHhc
Confidence 9999998 44443
No 101
>KOG2550|consensus
Probab=98.43 E-value=9.1e-07 Score=88.02 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHhchhcCcc-----chHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372 189 DLITEEEIYKLFREGFDIGIF-----NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263 (447)
Q Consensus 189 ~~~s~~el~~lv~~~~~~g~l-----~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP 263 (447)
..+|+.|.-..+...---|.+ .+.|..+++++-.|+.--+ + +.+.+.++.++.++++.-..++++.+|
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~---~----~p~v~sp~~tvg~v~~~k~~~gF~g~p 143 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFI---N----NPIVISPTTTVGEVKEAKEKHGFSGIP 143 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccc---c----CCcccCCcccchhhhhhcccccccccc
Confidence 457788887776655433433 3467788888777764332 2 345688999999999999999999999
Q ss_pred EEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEE
Q psy2372 264 VYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGII 340 (447)
Q Consensus 264 V~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiV 340 (447)
+.++. ..+++|+|+.+|+-.. ++.. ..+.++|. .+.+.|...++.++-+.+++++..-.||||+.|+++-++
T Consensus 144 vTe~g~~~~KLvG~vtsrdi~f~--~~~~---~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~ 218 (503)
T KOG2550|consen 144 VTEDGKRGSKLVGIITSRDIQFL--EDNS---LLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML 218 (503)
T ss_pred cccCCcccceeEEEEehhhhhhh--hccc---chhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee
Confidence 99632 4789999999999654 3333 67899995 457899999999999999999999999999999999999
Q ss_pred eHHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372 341 TINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF 377 (447)
Q Consensus 341 T~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i 377 (447)
++.|+...- +.+...+.++..|++.+.+.=
T Consensus 219 ~rtDl~k~~-------~yPlask~~~kqll~gAaiGT 248 (503)
T KOG2550|consen 219 SRTDLMKNR-------DYPLASKDSTKQLLCGAAIGT 248 (503)
T ss_pred ehhhhhhhc-------CCCccccCcccceeeeecccc
Confidence 999998753 122233345566776655543
No 102
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.09 E-value=0.00075 Score=69.90 Aligned_cols=118 Identities=12% Similarity=0.109 Sum_probs=79.5
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc----C
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI----Q 301 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im----~ 301 (447)
..++++|. ++.++++++++.++++.|++++....+|+|+. |..+|+|+..|++..+..+-.+....-.+.+ .
T Consensus 255 ~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~ 330 (408)
T TIGR03520 255 FDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDD 330 (408)
T ss_pred CCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCC
Confidence 34677785 35689999999999999999999999999864 8899999999999987543211101111222 2
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei 353 (447)
..+.++..+++.++.+.|.-.....-+.-+++. |....+-+.+|.+
T Consensus 331 ~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~------Tl~G~i~~~l~~i 376 (408)
T TIGR03520 331 NNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAE------TLAGFLLEISGGF 376 (408)
T ss_pred CeEEEEeccCHHHHHHHhCCCccccCCcCCCCc------cHHHHHHHHhCcC
Confidence 346788899999999888542111111112333 4444555667776
No 103
>KOG0475|consensus
Probab=97.94 E-value=5e-05 Score=79.64 Aligned_cols=121 Identities=24% Similarity=0.373 Sum_probs=92.6
Q ss_pred eceeeeeCC---ceEEEcCC-CCHHHHHHHHHhCCCcEEEEE-eCCCCeEEEEEEhhhHHHHhHhCC-------------
Q psy2372 228 AITLMTPRM---KVNFINID-DNIEKNLIKILDSSYNYFPVY-KKSISKIIGTLNTKTLFKKIISNR------------- 289 (447)
Q Consensus 228 V~dvM~pr~---~v~~v~~~-~tl~e~~~~~~~~~~s~iPV~-~~~~~~ivGiv~~~DLl~~~~~~~------------- 289 (447)
..++|.|+. ....++.+ .+++|....|.++.++.+||+ +++..+++|++..+|+...+.+.+
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f 624 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYF 624 (696)
T ss_pred hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccccc
Confidence 344554442 34555555 799999999999999999988 445689999999999987654210
Q ss_pred ----------CccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 290 ----------SIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 290 ----------~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
.+...+++++|. .|.++...++...++++|++-+.....|. ++|++.|+||..|++...
T Consensus 625 ~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 625 NDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 011235667774 57899999999999999999888888664 689999999999998753
No 104
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=2.5e-05 Score=65.03 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=49.1
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++.++|.+ ++.++++++++.++++.|.+++.+++||+|++ ++++|+++.+|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 468899963 56789999999999999999999999999855 89999999999975
No 105
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.91 E-value=3.1e-05 Score=73.06 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=71.8
Q ss_pred CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccccccceEEecCCeEEE
Q psy2372 294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSWII 371 (447)
Q Consensus 294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~~v 371 (447)
.++.++| ++++++.+++++.++.+.|.+++++-+||+|+ ++++|++|..|+.+++...- +-. -..+. ..+.+.+
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~k-V~~~M--~k~vitI 247 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAK-VSDYM--RKNVITI 247 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCcccc-HHHHh--ccCCceE
Confidence 6789999 57889999999999999999999999999996 69999999999999998642 221 11111 3456778
Q ss_pred eccCCHHHHHHHhCC
Q psy2372 372 SASMTFDRFKELLSN 386 (447)
Q Consensus 372 ~g~~~i~~~~~~l~~ 386 (447)
+.+..+.|.-|.++.
T Consensus 248 ~eDe~i~dAir~M~~ 262 (294)
T COG2524 248 NEDEDIYDAIRLMNK 262 (294)
T ss_pred cCchhHHHHHHHHHh
Confidence 888999998777654
No 106
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.81 E-value=2.5e-05 Score=81.89 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=89.3
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCC
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPP 303 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~ 303 (447)
.+.+++++|+| ++.++++++++.++.+.|+++++..+||+|++ |+++|+|+.+|+++.+.+. .-.++|+..
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~------~~ed~~~~~ 263 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE------ATEDFYMIA 263 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh------hHHHHHHhc
Confidence 45679999985 56789999999999999999999999999855 8999999999999988652 246777533
Q ss_pred -eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 304 -LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 304 -~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
.+..++..+.+++..|.+++...++|. .+.|++| ..++...
T Consensus 264 gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 264 AVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNY 305 (449)
T ss_pred CCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHH
Confidence 334456778999999999999888775 4677777 6666653
No 107
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=5.3e-05 Score=63.71 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=48.6
Q ss_pred CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372 294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347 (447)
Q Consensus 294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle 347 (447)
.++.++| +++.++++++++.++++.|++++.+.+||+|+.|+++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4588888 46789999999999999999999999999999899999999999864
No 108
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.78 E-value=7.5e-05 Score=51.11 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=43.3
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i 349 (447)
++.++++++++.++++.|++.+.+.++|+|++|++.|+++..|+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 356889999999999999999999999999889999999999998754
No 109
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.73 E-value=8.1e-05 Score=61.56 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=50.8
Q ss_pred ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+....++.++|.+ ++.++++++++.++++.+.+++.+++||++++ ++++|+++..|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 4444579999975 45689999999999999999999999999854 89999999999975
No 110
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.71 E-value=0.00019 Score=60.43 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=61.2
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc--cccc-eEEe---cCCeEEEecc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS--YQEE-IEFC---EDGSWIISAS 374 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~--~~~~-~~~~---~~~~~~v~g~ 374 (447)
+..++++++++.++++.|.+++.+.+||+|+.|+++|++|..|++.....+. +.. .-.. +... .++...+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 5678999999999999999999999999998899999999999997654332 111 0000 1111 1334678888
Q ss_pred CCHHHHHHHhC
Q psy2372 375 MTFDRFKELLS 385 (447)
Q Consensus 375 ~~i~~~~~~l~ 385 (447)
.+++++.+.+.
T Consensus 82 ~~l~~~~~~m~ 92 (120)
T cd04641 82 DCLRTIFDLIV 92 (120)
T ss_pred CcHHHHHHHHH
Confidence 88888766654
No 111
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.71 E-value=1.7e-05 Score=76.13 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=52.3
Q ss_pred CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
.+..++| |++.++++++++.++.++|++++++-.||+||+.+++|+||..|+++.
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 6789999 789999999999999999999999999999999999999999999984
No 112
>KOG1764|consensus
Probab=97.68 E-value=0.00023 Score=72.77 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=97.7
Q ss_pred eeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc------cCCChhhhc----CC
Q psy2372 233 TPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI------VNIDITSAI----QP 302 (447)
Q Consensus 233 ~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~------~~~~v~~im----~~ 302 (447)
+++...+.+.+..++-++...+.++++.++||.|.+.+++..+++.+-+++.+...... ...++.+.- ..
T Consensus 159 ~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~ 238 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSN 238 (381)
T ss_pred ccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhh
Confidence 44455578999999999999999999999999996668999999999999987643321 012233321 23
Q ss_pred CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
..++.+++++.+|+++|..++..-+||||++|+.+|..++.|+......
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence 6789999999999999999999999999999999999999999988764
No 113
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.68 E-value=0.00025 Score=59.47 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=61.2
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHHH
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFDR 379 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~~ 379 (447)
++.++++++++.++++.|.+++...+||+|++|+++|+||..|+.....++. ... .-..+.........++...++.+
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 81 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE 81 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence 5678999999999999999899999999998899999999999999876432 111 11112211123457888888887
Q ss_pred HHHHh
Q psy2372 380 FKELL 384 (447)
Q Consensus 380 ~~~~l 384 (447)
..+.+
T Consensus 82 ~~~~~ 86 (118)
T cd04617 82 AAKKL 86 (118)
T ss_pred HHHHH
Confidence 65554
No 114
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.67 E-value=0.00024 Score=60.57 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=62.9
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFD 378 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~ 378 (447)
+++.++++++++.++++.|++++.+.+||+|+.|+++|++|.+|++..+..+. +.+ .-..+. ..+...++...++.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~~~ 79 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKAL--YKQFKRVNKNDTLG 79 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHh--hccceecCCCCCHH
Confidence 46789999999999999999999999999999899999999999998776543 222 111111 23345677778888
Q ss_pred HHHHHhC
Q psy2372 379 RFKELLS 385 (447)
Q Consensus 379 ~~~~~l~ 385 (447)
++.+.+.
T Consensus 80 ~v~~~~~ 86 (124)
T cd04608 80 KLSRILE 86 (124)
T ss_pred HHHhhcc
Confidence 8777553
No 115
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=0.00013 Score=61.33 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+++++|.+ ++.+++.++++.++++.|.++++..+||+|++ ++++|+++.+|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 569999975 56689999999999999999999999999854 79999999999864
No 116
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.65 E-value=7.4e-05 Score=62.14 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=50.4
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|.+...+.++++++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 45788999865556689999999999999999999999999854 79999999999864
No 117
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=8.7e-05 Score=61.95 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=49.3
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|. +++.++++++++.++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 58 ~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 456888896 466789999999999999999999999999854 79999999999874
No 118
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.55 E-value=0.00033 Score=71.76 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=81.6
Q ss_pred HHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCC
Q psy2372 216 LASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNID 295 (447)
Q Consensus 216 ~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~ 295 (447)
++..+...+-.+++++|.|.... ...+ .. .+++. ++.++..|+|+ |+++..+.......... ..
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~-~~-~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~ 327 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDL--EHVD-GG-WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAE---QE 327 (382)
T ss_pred HhcccCcccceeHHHHhcccccc--cccC-cc-hhhhh---cccceeEeecc------ceecccchHhHhhcccc---cc
Confidence 33444445566788999654332 2222 22 34433 78888888873 88888887654432122 34
Q ss_pred hhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 296 ITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 296 v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
+.++.+...++++++++.+++..+.+.+.+. +|+|+ |+++|+|+..++++.+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 328 VESLEAAPTVINPDTLMRDVLAARHRTGGAI-LLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hhhhcccCcccCCCCcHHHHHHHHhcCCCCe-EEeeC-CeEEEEEeHHHHHHHHhc
Confidence 6665567889999999999999888877664 57786 999999999999999865
No 119
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.55 E-value=0.00017 Score=58.96 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=42.1
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++++++++.++++.|.+++.+++||++++.++++|+++.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 6689999999999999999999999999854479999999999975
No 120
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00026 Score=57.48 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
+++..+++++++.++++.|.+++...+||+|++|+++|++|.+|+...
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 457789999999999999999999999999999999999999999874
No 121
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.52 E-value=0.00035 Score=73.99 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=81.6
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----ccCCChhhhc
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----IVNIDITSAI 300 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----~~~~~v~~im 300 (447)
+.+++++|++ .+++++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++....... .....+...|
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai 223 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAV 223 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeec
Confidence 4578999973 467889999999999999999999999999865 899999999999987532110 0001122222
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcC-CCCEEEEEeHHHHHHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDE-YGELEGIITINDIIHS 348 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe-~G~~iGiVT~~DIle~ 348 (447)
.+++ .-.+..+.|.+.+.+.+ |+|. +|+..|+++.-+.+..
T Consensus 224 ----~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 224 ----GVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred ----ccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 2222 22677778888888865 5553 5777777766665554
No 122
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00013 Score=62.12 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=48.2
Q ss_pred CceeeceeeeeCCceEEEc----CCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFIN----IDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~----~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.+++++|.+......++ +++++.++++.|.+++.+++||+|++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997543333443 68899999999999999999999854368999999999976
No 123
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00026 Score=58.72 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=48.3
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++.++|.+ .+.++++++++.++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 468889964 46689999999999999999999999999854 79999999999874
No 124
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00034 Score=57.86 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=45.8
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
+++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhh
Confidence 357789999999999999998888889999998999999999999987764
No 125
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.50 E-value=0.00055 Score=56.87 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=45.3
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|++++.+.+||+|++ |+++|++|.+|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~ 52 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA 52 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence 46789999999999999999999999999987 899999999999987654
No 126
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00068 Score=55.76 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.+++++.++.++++.|.+++.+.+||+|++|+++|++|..|++..+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 56788999999999999999999999999988999999999999987653
No 127
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.49 E-value=0.00033 Score=60.84 Aligned_cols=50 Identities=28% Similarity=0.332 Sum_probs=46.0
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
.+.++++++++.++++.|.+++.+.+||+|+.|+++|+||..|++..+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999998764
No 128
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.49 E-value=0.00016 Score=76.50 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=55.8
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI 285 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~ 285 (447)
..+.+|+++|+|..+++++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+++..
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence 3457899999987788899999999999999999999999999854 7999999999999864
No 129
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.49 E-value=0.00038 Score=69.81 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=64.3
Q ss_pred CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc--ccccccceEEecCCe
Q psy2372 294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI--SNSYQEEIEFCEDGS 368 (447)
Q Consensus 294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei--~e~~~~~~~~~~~~~ 368 (447)
.+++++|. ++.++++++++.++++.|.+++.+..||+|++|+++|+||..|+......+. ++..-..+. ..+.
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im--~~~~ 279 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVM--TPGG 279 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhc--CCCC
Confidence 57899995 6789999999999999999988888888998999999999999987543221 111001111 1234
Q ss_pred EEEeccCCHHHHHHHh
Q psy2372 369 WIISASMTFDRFKELL 384 (447)
Q Consensus 369 ~~v~g~~~i~~~~~~l 384 (447)
..++...++.+..+.+
T Consensus 280 ~~v~~~~~l~~a~~~m 295 (326)
T PRK10892 280 IRVRPGILAVDALNLM 295 (326)
T ss_pred EEECCCCCHHHHHHHH
Confidence 5667777777765544
No 130
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.49 E-value=0.00025 Score=58.94 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=47.7
Q ss_pred ceeeceeeeeCCceEEEcCC--CCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINID--DNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~--~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|.+ ++.+++++ +++.++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4568888864 56677776 689999999999999999999865 89999999999976
No 131
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.49 E-value=0.00074 Score=71.63 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=56.4
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS 287 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~ 287 (447)
.+.+|.++|++...+.++++++++.++++.|.+++..++||+|++ ++++|+|+.+|+++....
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhC
Confidence 456799999986668899999999999999999999999999854 799999999999987753
No 132
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.48 E-value=0.00042 Score=72.93 Aligned_cols=99 Identities=10% Similarity=0.141 Sum_probs=69.9
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhh-hcCCCe
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITS-AIQPPL 304 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~-im~~~~ 304 (447)
..+.++|+ .++.++++++++.|+++.|.+++...+||+|++ ++++|+|+.+|+++....... ...+. .+-. -
T Consensus 148 ~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~~~---~~~~g~l~V~-a 220 (479)
T PRK07807 148 TQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYTPA---VDAAGRLRVA-A 220 (479)
T ss_pred CCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCCch---hhhhhccchH-h
Confidence 46999998 477899999999999999999999999999865 799999999999987643211 01111 0000 0
Q ss_pred eeCCCCCHHHHHHHHHHcCCceEEEEcC
Q psy2372 305 FIPETISTMQLLETFKKNKSELSLVIDE 332 (447)
Q Consensus 305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe 332 (447)
-+.......+.++.|.+.+.+. +++|-
T Consensus 221 av~~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 221 AVGINGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred hhccChhHHHHHHHHHHhCCCE-EEEec
Confidence 1222234567777777777777 46663
No 133
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.47 E-value=0.00053 Score=56.51 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=59.9
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFD 378 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~ 378 (447)
|++.++++++++.++++.|++++...+||+|++|++.|++|..|+...+..+- .+. .-..+. ....+.++...++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~--~~~~~~v~~~~~~~ 78 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIM--TKPPVVVYPEDSLE 78 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhc--cCCCcEEcCCCCHH
Confidence 46788999999999999999988889999998899999999999987654322 111 000111 22346677778877
Q ss_pred HHHHHh
Q psy2372 379 RFKELL 384 (447)
Q Consensus 379 ~~~~~l 384 (447)
++.+.+
T Consensus 79 ~~~~~~ 84 (114)
T cd04613 79 DALKKF 84 (114)
T ss_pred HHHHHH
Confidence 766655
No 134
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.47 E-value=0.00068 Score=55.87 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=58.4
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFD 378 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~ 378 (447)
+++.++++++++.++++.|.+++...++|+|+ |++.|+++.+|+.+.+..+. +.+ .-..+. ..+.+.++-..++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~v~~~~~l~ 77 (111)
T cd04589 1 RPPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIA--TFPLITVDPDDFLF 77 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHh--CCCcEEECCCCcHH
Confidence 35678999999999999999888889999998 99999999999998765432 221 101111 22345667777777
Q ss_pred HHHHHh
Q psy2372 379 RFKELL 384 (447)
Q Consensus 379 ~~~~~l 384 (447)
++.+.+
T Consensus 78 ~~~~~~ 83 (111)
T cd04589 78 NALLLM 83 (111)
T ss_pred HHHHHH
Confidence 765554
No 135
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.44 E-value=0.00021 Score=62.87 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=58.2
Q ss_pred hhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372 278 TKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352 (447)
Q Consensus 278 ~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge 352 (447)
.+.+++++.+... ...+.+.+| +|+++++++.++.+++.+|++++...+||+++ |+++|-||-.||...+...
T Consensus 50 ~k~Il~aL~e~e~-~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 50 VKRILEALEEAEK-TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEG 123 (187)
T ss_pred HHHHHHHHHHhhc-ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcc
Confidence 3445555443221 125678888 56789999999999999999999999999987 9999999999999988653
No 136
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.43 E-value=0.00024 Score=59.33 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=50.2
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.++.++|.+ +..+++.++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 45678889974 57789999999999999999999999999854 79999999999976
No 137
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.43 E-value=0.0009 Score=55.59 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=58.7
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccc-cc-cccceEEecCCeEEEeccCCHHH
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS-NS-YQEEIEFCEDGSWIISASMTFDR 379 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~-e~-~~~~~~~~~~~~~~v~g~~~i~~ 379 (447)
+++++++++++.++++.|.+.+.+.++|+|++|+++|+++..|+...+..+-+ .. .-..+ .......+....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEV--ATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHh--ccCCceEECCCCCHHH
Confidence 45688999999999999999999999999999999999999999987754321 11 00011 1233456677777777
Q ss_pred HHHHh
Q psy2372 380 FKELL 384 (447)
Q Consensus 380 ~~~~l 384 (447)
..+.+
T Consensus 80 ~l~~~ 84 (115)
T cd04593 80 ALDRM 84 (115)
T ss_pred HHHHH
Confidence 65554
No 138
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.40 E-value=0.0012 Score=69.58 Aligned_cols=186 Identities=9% Similarity=0.062 Sum_probs=111.6
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCee
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLF 305 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~ 305 (447)
.+++++|++ +++++++++++.++++.|.+++...+||+|++ ++++|+|+.+|+++....... ...+.-.+----
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~~~---~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYTPA---TDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCCch---hhhccCceehhe
Confidence 569999984 67899999999999999999999999999854 899999999999986543211 000000000001
Q ss_pred eCCCCCHHHHHHHHHHcCCceEEEEcC-CC--------------------CEEE-EEeHHHHHHHHhccc---c------
Q psy2372 306 IPETISTMQLLETFKKNKSELSLVIDE-YG--------------------ELEG-IITINDIIHSLIGDI---S------ 354 (447)
Q Consensus 306 V~~~~~l~~al~~m~~~~~~~a~VvDe-~G--------------------~~iG-iVT~~DIle~i~gei---~------ 354 (447)
+.......+.++.+.+.+.+.+ ++|- +| -+.| +.|.++....+--.. +
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~G 298 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDVL-VIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPG 298 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCEE-EEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCC
Confidence 2222334444555555555443 3342 11 1246 677777665542110 1
Q ss_pred ----cc---c--ccc---eE------EecCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 355 ----NS---Y--QEE---IE------FCEDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 355 ----e~---~--~~~---~~------~~~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
-. . .+. +. +..+-..+.+|.+. -.|+.+.+..- .++-.+|+++ -|.--.+
T Consensus 299 s~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~G--------A~~vm~g~~~---ag~~esp 367 (475)
T TIGR01303 299 AMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAG--------ASNVMVGSWF---AGTYESP 367 (475)
T ss_pred ccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC--------CCEEeechhh---cccccCC
Confidence 00 0 000 00 00122355666554 45566665432 2467888887 4778889
Q ss_pred CcEEE-EcCEEEEEE
Q psy2372 416 SENFI-WKNIKIEVI 429 (447)
Q Consensus 416 g~~~~-~~~~~f~v~ 429 (447)
||.+. ++|-++|.-
T Consensus 368 g~~~~~~~g~~~k~y 382 (475)
T TIGR01303 368 GDLMRDRDGRPYKES 382 (475)
T ss_pred CceEEeECCEEEEEE
Confidence 99997 999999875
No 139
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00034 Score=68.52 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=92.6
Q ss_pred HHHHhhhcccCceeeceeeeeCCceEEEcC-CCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc
Q psy2372 214 YNLASRALKLDDQCAITLMTPRMKVNFINI-DDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV 292 (447)
Q Consensus 214 ~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~-~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~ 292 (447)
++.++++-...-.+++++|.+ .+....+. ...-..+.+.+...+.+.+-+++ ..++.+|+++..++...
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~-------- 331 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA-------- 331 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc--------
Confidence 466777777777889999985 33222222 23335677888887777777776 44679999999877653
Q ss_pred CCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 293 NIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 293 ~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
....++..++.++++.+.+...++...+++ |+||.|+++|+++...+++++.+
T Consensus 332 -----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 -----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred -----cccccccccCccchHHHHHHHHhcCCCcee-EEcCCCcEEEEecHHHHHHHHhc
Confidence 223467789999999999999998887776 88999999999999999999865
No 140
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.38 E-value=0.00029 Score=59.28 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=50.1
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
...+++++|.+ ++.++++++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 45578899974 67789999999999999999999999999854 89999999999975
No 141
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.37 E-value=0.00037 Score=57.98 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=47.0
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
..++++|.+....+..++++++.++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 4588999765444444559999999999999999999999854 79999999999874
No 142
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00047 Score=56.83 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=48.3
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|. +++.++++++++.++++.|.+++..++||+++ ++++|+++..|++.
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 346888886 46778999999999999999999999999984 79999999999874
No 143
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.00042 Score=57.22 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=48.2
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++.++|.+ ++.+++.++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 358889974 56689999999999999999999999999854 89999999999975
No 144
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.35 E-value=0.00081 Score=67.24 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=64.0
Q ss_pred CChhhhcC-C--CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccccccceEEecCCeE
Q psy2372 294 IDITSAIQ-P--PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSW 369 (447)
Q Consensus 294 ~~v~~im~-~--~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~ 369 (447)
.+++++|+ + ++++++++++.++.+.|.+++...+||+|++|+++|+||..|+...+..+. .+..-.++. ..+..
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im--~~~~~ 274 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAM--TRGGT 274 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhc--CCCCE
Confidence 56889995 4 789999999999999999888899999999999999999999987664322 111001111 12334
Q ss_pred EEeccCCHHHHHHHh
Q psy2372 370 IISASMTFDRFKELL 384 (447)
Q Consensus 370 ~v~g~~~i~~~~~~l 384 (447)
.+....++.+..+.+
T Consensus 275 ~v~~~~~l~~a~~~m 289 (321)
T PRK11543 275 TLQAQSRAIDAKEIL 289 (321)
T ss_pred EECCCCCHHHHHHHH
Confidence 566667777665444
No 145
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.0012 Score=54.59 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=59.3
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc-cc-ccccccceEEecCCeEEEeccCCHHH
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG-DI-SNSYQEEIEFCEDGSWIISASMTFDR 379 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g-ei-~e~~~~~~~~~~~~~~~v~g~~~i~~ 379 (447)
++.++++++++.++++.|.+.+...++|+|+.|+++|++|..|+...... +. .+..-..+. ......++.+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~--~~~~~~v~~~~~l~~ 79 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVM--NSPVITIDANDSIAK 79 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhc--cCCceEECCCCcHHH
Confidence 46789999999999999999999999999988999999999999876432 11 111001111 134456777788887
Q ss_pred HHHHh
Q psy2372 380 FKELL 384 (447)
Q Consensus 380 ~~~~l 384 (447)
+.+.+
T Consensus 80 ~~~~~ 84 (113)
T cd04615 80 ARWLM 84 (113)
T ss_pred HHHHH
Confidence 76665
No 146
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.0016 Score=53.62 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=45.8
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge 352 (447)
++.+++++.++.++++.|.+.+.+.+||+|++|+++|++|..|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~ 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc
Confidence 567899999999999999988888999999889999999999999876543
No 147
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.34 E-value=0.00035 Score=57.65 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=48.4
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++.++|.+ ...++++++++.++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 568889964 55689999999999999999999999999865 79999999999874
No 148
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00096 Score=56.62 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=45.1
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|.+++...+||+|+.|+++|++|..|+.....+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~ 51 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLS 51 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcC
Confidence 46789999999999999999999999999999999999999999987643
No 149
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.0005 Score=58.06 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=44.8
Q ss_pred ceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHH
Q psy2372 229 ITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282 (447)
Q Consensus 229 ~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl 282 (447)
.++|. .++.++++++++.++++.|.+++.+++||+|++ ++++|+|+.+|+.
T Consensus 71 ~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred cccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 44665 467799999999999999999999999999865 7899999999985
No 150
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.0004 Score=57.11 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=49.3
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+..+.++|.+ +..++++++++.++.+.|.+++...+||++++ ++++|+++.+|+++
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 4568889974 56789999999999999999999999999854 79999999999875
No 151
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.30 E-value=0.00076 Score=55.00 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=55.1
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRF 380 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~ 380 (447)
+++++++++.++.++++.|++++.+.++|+|++|+++|++|..|+....-..+.+ +. ......++-..++.+.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCGD-----HA--EPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcccchhh-----hc--ccCCEEECCCCCHHHH
Confidence 3567899999999999999988888999999889999999999998743111111 11 1122346666777766
Q ss_pred HHHh
Q psy2372 381 KELL 384 (447)
Q Consensus 381 ~~~l 384 (447)
.+.+
T Consensus 74 ~~~~ 77 (106)
T cd04582 74 LSRM 77 (106)
T ss_pred HHHH
Confidence 5443
No 152
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.00044 Score=56.49 Aligned_cols=56 Identities=11% Similarity=0.277 Sum_probs=48.6
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+..++++|.+ ...++++++++.++++.|.+++.+++||++++ |+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3468889964 45689999999999999999999999999855 79999999999975
No 153
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.29 E-value=0.00075 Score=55.53 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=49.2
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.++.++|.+ ...+++.++++.++++.|.+++.+.+||.+ + ++++|+++.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678889974 567899999999999999999999999998 4 79999999999875
No 154
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00082 Score=55.70 Aligned_cols=50 Identities=24% Similarity=0.364 Sum_probs=45.5
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|++++.+.+||+|+.|+++|+|+..|++..+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~ 51 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG 51 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence 46789999999999999999999999999988999999999999987653
No 155
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.00069 Score=55.87 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=48.5
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.++.++|.+ ++.++++++++.++++.+.+++...+||+++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 34578889964 5778999999999999999999999999985 38999999999874
No 156
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.29 E-value=0.00075 Score=73.09 Aligned_cols=89 Identities=17% Similarity=0.299 Sum_probs=66.6
Q ss_pred CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEE
Q psy2372 294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWI 370 (447)
Q Consensus 294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~ 370 (447)
.+++|+|+ ++.++++++++.++++.|++++.+..||+|++|+++|+||.+|+.+.+..+- +++ .-.++. ..+...
T Consensus 447 ~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim--~~~~~~ 524 (574)
T PRK01862 447 TQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYA--HTPFPL 524 (574)
T ss_pred CcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhc--cCCCee
Confidence 67899995 5678999999999999999999999999999999999999999988664332 111 111111 223356
Q ss_pred EeccCCHHHHHHHh
Q psy2372 371 ISASMTFDRFKELL 384 (447)
Q Consensus 371 v~g~~~i~~~~~~l 384 (447)
++.+.+++|..+.+
T Consensus 525 v~~d~~L~~al~~m 538 (574)
T PRK01862 525 LTPDMPLGDALEHF 538 (574)
T ss_pred ECCCCCHHHHHHHH
Confidence 78888888876554
No 157
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.28 E-value=0.00057 Score=73.53 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=53.8
Q ss_pred CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372 294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352 (447)
Q Consensus 294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge 352 (447)
.+++++| +++.++++++++.++++.|++++.+.+||+|+.|+++|+||..|+.+.+.+.
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~ 127 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence 5789998 5678999999999999999999999999999989999999999999987653
No 158
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.26 E-value=0.00084 Score=45.69 Aligned_cols=47 Identities=17% Similarity=0.401 Sum_probs=41.4
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI 285 (447)
Q Consensus 238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~ 285 (447)
+.++++++++.++.+.|.+++++.+||++++ ++++|+++.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 3568899999999999999999999999865 7999999999997653
No 159
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.26 E-value=0.0011 Score=54.25 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=44.3
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|.+++.+.+||+|+ |+++|++|..|+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 4578899999999999999999999999998 999999999999987653
No 160
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.25 E-value=0.0012 Score=69.23 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=52.3
Q ss_pred CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
.+++++| +++.++++++++.++++.|++++.+.+||+|++|+++|+||.+|++..+..
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 6789999 567899999999999999999898999999988999999999999987654
No 161
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.24 E-value=0.00032 Score=57.55 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=46.6
Q ss_pred ceeeceeeeeCCceEEEcC-CCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINI-DDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~-~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|.+. ...+.. ++++.++++.|.+++++.+||++++ ++++|+++.+|+++
T Consensus 53 ~~~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE--NLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC--ceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 45788899643 334555 9999999999999999999999854 79999999999875
No 162
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.24 E-value=0.00093 Score=54.83 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=49.3
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.++.++|.+ ++.++++++++.++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 34668888864 57789999999999999999999999999854 79999999999875
No 163
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.23 E-value=0.0018 Score=52.51 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cccc-ccceEEecCCeEEEeccCCHHH
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSY-QEEIEFCEDGSWIISASMTFDR 379 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~-~~~~~~~~~~~~~v~g~~~i~~ 379 (447)
++.+++++.++.++.+.|.+++.+.+||+|+.|++.|+++..|++....+.. .+.. -..+ .....+.+....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDV--MTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHH--hcCCceecCCCcCHHH
Confidence 4678899999999999999988899999999899999999999998876543 1110 0001 1123344556666666
Q ss_pred HHHHh
Q psy2372 380 FKELL 384 (447)
Q Consensus 380 ~~~~l 384 (447)
..+.+
T Consensus 80 ~~~~~ 84 (113)
T cd02205 80 AAELM 84 (113)
T ss_pred HHHHH
Confidence 55544
No 164
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.0011 Score=56.34 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=44.6
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ 350 (447)
++..+++++++.++++.|.+.+.+.++|+|+.|++.|++|..|+.+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV 50 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence 4678899999999999999999999999999899999999999987654
No 165
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.0014 Score=54.92 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=45.6
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|.+.+.+.+||+|++|+++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~ 51 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS 51 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcc
Confidence 56789999999999999999999999999988999999999999987654
No 166
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.22 E-value=0.00091 Score=54.88 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=47.3
Q ss_pred eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.++|.+ ++.+++.++++.++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 57 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 57 LVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 56777863 56789999999999999999999999999854 79999999999875
No 167
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00064 Score=56.07 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=48.3
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|.+ ++.+++.++++.++++.|.+++..++||++ + ++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhc
Confidence 4568899963 566899999999999999999999999998 3 79999999999975
No 168
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.21 E-value=0.0011 Score=70.23 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=55.2
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI 285 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~ 285 (447)
.+.+++++|+|+.++++++++.++.|+.++|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence 356799999987788999999999999999999999999999865 8999999999999764
No 169
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.21 E-value=0.00065 Score=55.94 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=49.9
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~ 284 (447)
+.+++++|.+ +...+++++++.++++.|.+++...+||++++ ++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4568888864 56789999999999999999999999999865 799999999999864
No 170
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.20 E-value=0.0013 Score=54.01 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=56.9
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRF 380 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~ 380 (447)
+++.++++++++.++++.|.+++.+.++|+|+.|+++|++|..|++..+..... . -..+. ......++-..+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~-~-~~~~~--~~~~~~v~~~~~l~~~ 77 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKK-S-VEDIM--TRNVITATPDEPIDVA 77 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCcc-C-HHHhc--CCCCeEECCCCcHHHH
Confidence 467789999999999999999888899999988999999999999875532110 0 00010 1233456666677776
Q ss_pred HHHh
Q psy2372 381 KELL 384 (447)
Q Consensus 381 ~~~l 384 (447)
.+.+
T Consensus 78 ~~~~ 81 (110)
T cd04605 78 ARKM 81 (110)
T ss_pred HHHH
Confidence 5444
No 171
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.18 E-value=0.00052 Score=57.45 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.+.++.++|.+ +..+++.++++.++++.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 345678888964 5778999999999999999999999999984 79999999999975
No 172
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.18 E-value=0.0012 Score=54.65 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=47.2
Q ss_pred eeceeeeeCCceEEEcCCCCHHHHHHHHHh-CCCcEEEEEeCCCCeEEEEEEhhhHH
Q psy2372 227 CAITLMTPRMKVNFINIDDNIEKNLIKILD-SSYNYFPVYKKSISKIIGTLNTKTLF 282 (447)
Q Consensus 227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~-~~~s~iPV~~~~~~~ivGiv~~~DLl 282 (447)
.++++|++ ++.++.++.++.++.+.|.+ ++.+++||++++.++++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 58999984 67799999999999999999 79999999996412999999999874
No 173
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00063 Score=57.28 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=49.6
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.++.++|.+ .+.+++.++++.++++.|.+++.+.+||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 34568888863 57799999999999999999999999999854 78999999999975
No 174
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.16 E-value=0.00085 Score=58.14 Aligned_cols=56 Identities=16% Similarity=0.318 Sum_probs=49.3
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.+.+++++|.+ ++.++++++++.++++.|.++++..+||+++ ++++|+++.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35579999974 5568999999999999999999999999984 79999999999875
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.15 E-value=0.0017 Score=63.00 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=63.1
Q ss_pred CChhhhcC-C-CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccc-cccccceEEecCCeEE
Q psy2372 294 IDITSAIQ-P-PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS-NSYQEEIEFCEDGSWI 370 (447)
Q Consensus 294 ~~v~~im~-~-~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~-e~~~~~~~~~~~~~~~ 370 (447)
.+++++|+ + +.++++++++.++++.|.+.+.+.++|+|++|+++|+||..|+...+.++.+ +..-..+. ....-.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im--~~~~~~ 232 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFM--TLGPKT 232 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhC--CCCCeE
Confidence 56888884 5 6899999999999999999889999999988999999999999986643221 11000111 122234
Q ss_pred EeccCCHHHHHHHh
Q psy2372 371 ISASMTFDRFKELL 384 (447)
Q Consensus 371 v~g~~~i~~~~~~l 384 (447)
++...+++|..+.+
T Consensus 233 v~~~~~l~~a~~~m 246 (268)
T TIGR00393 233 FKLDALLLEALEFL 246 (268)
T ss_pred ECCCCcHHHHHHHH
Confidence 66666766654443
No 176
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.13 E-value=0.00085 Score=57.42 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=48.5
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
..++.++|.+ ++..++.++++.++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 3468889964 5678999999999999999999999999985 89999999999975
No 177
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.13 E-value=0.00096 Score=54.52 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=48.1
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
..+.++|.+ ++.++++++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 457888874 56789999999999999999999999999855 79999999999875
No 178
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.00074 Score=55.59 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=48.3
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
..+.++|. .++.+++.++++.++.+.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 46888886 467789999999999999999999999999854 79999999999864
No 179
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.08 E-value=0.0013 Score=53.84 Aligned_cols=54 Identities=9% Similarity=0.303 Sum_probs=47.2
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++.++|.+ +..++++++++.++++.|.+++.+++||++ + ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357788874 456899999999999999999999999997 4 89999999999875
No 180
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.07 E-value=0.00095 Score=55.76 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=49.8
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
....++.++|.+ .+.+++.+++++++++.|.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 345678888974 5678999999999999999999999999984 79999999999975
No 181
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.06 E-value=0.0011 Score=54.61 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=48.5
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+.++.++|. .++.++++++++.++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 356888886 36778999999999999999999999999984 79999999999874
No 182
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.0012 Score=53.69 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=48.2
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+..+.++|.+ +..+++.++++.++++.|.+++.+.+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 3468888964 5678999999999999999999999999984 89999999999873
No 183
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.00098 Score=55.85 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=49.3
Q ss_pred CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
...++.++|. .++.+++.++++.++.+.|.+++.+.+||++++ ++++|+++..|+++
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 3456788886 356789999999999999999999999999865 89999999999875
No 184
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.05 E-value=0.0021 Score=53.50 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=43.2
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcC-CceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372 301 QPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLI 350 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~-~~~a~VvDe~G~~iGiVT~~DIle~i~ 350 (447)
|+++++++++++.++++.|+..+ .+.++|+|+ |++.|+|+..|++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 45678999999999999998876 788999999 99999999999987554
No 185
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.0018 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|.+++.+.+||+|+.|+++|+|+..|+++....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~ 52 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL 52 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcc
Confidence 56789999999999999999999999999998999999999999986644
No 186
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.98 E-value=0.0052 Score=50.33 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHHH
Q psy2372 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRF 380 (447)
Q Consensus 301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~ 380 (447)
+++..+++++++.++++.|.+++.+.+||+|+ |++.|+++.+|++...-...+...-..+. .+....++...++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~--~~~~~~v~~~~~~~~~ 77 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVM--TKDVITIDEDEQLYDA 77 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHh--cCCceEECCCCCHHHH
Confidence 35678999999999999999989889999998 99999999999997643221100000011 1233456666666666
Q ss_pred HHHh
Q psy2372 381 KELL 384 (447)
Q Consensus 381 ~~~l 384 (447)
.+.+
T Consensus 78 ~~~~ 81 (110)
T cd04588 78 IRLM 81 (110)
T ss_pred HHHH
Confidence 5554
No 187
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0011 Score=55.51 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=47.9
Q ss_pred eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++++|. .++.+++.++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 68 ~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 68 RAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred HHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 5778886 467789999999999999999999999999854 79999999999975
No 188
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.92 E-value=0.0031 Score=51.79 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++.+.|.+++...++|+|+. |+++|++|..|++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 46789999999999999999888899999987 999999999999987754
No 189
>PRK11573 hypothetical protein; Provisional
Probab=96.89 E-value=0.2 Score=52.14 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=69.0
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCC--hhhhc---CCCeeeCCCCC
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNID--ITSAI---QPPLFIPETIS 311 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~--v~~im---~~~~~V~~~~~ 311 (447)
++.+++++.++.++++.|++++..-..|+|+- |...|+|+..|++..+..+-.++..+ -.++. ...+.++..++
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 341 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN 341 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeE
Confidence 46789999999999999999988888888864 88999999999999876432211000 01111 12356777777
Q ss_pred HHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372 312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353 (447)
Q Consensus 312 l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei 353 (447)
+.++-+.+.- +. |- ++ .=|....+-+.+|.+
T Consensus 342 l~d~~~~l~~---~l-~~-~~------~~Tl~G~i~~~lg~i 372 (413)
T PRK11573 342 VREINKAFNW---HL-PE-DD------ARTVNGVILEALEEI 372 (413)
T ss_pred HHHHHHHhCC---CC-CC-CC------CeeHHHHHHHHhCcC
Confidence 7777766632 21 10 11 235555555666666
No 190
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.85 E-value=0.0037 Score=51.43 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=43.5
Q ss_pred eeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 231 vM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
+|.+ ++.+++.++++.++.+.|.+++..++||++ + ++++|+++.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~-~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-E-GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-C-CeEEEEEEhhhhhc
Confidence 6763 567899999999999999999999999996 3 79999999999975
No 191
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.66 E-value=0.0049 Score=60.95 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=50.7
Q ss_pred CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHH
Q psy2372 294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSL 349 (447)
Q Consensus 294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i 349 (447)
.+++++|+| +.++++++++.++++.+.+++.+..||+|++ ++++|+|+..|++...
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 679999976 6899999999999999999999999999876 7899999999998644
No 192
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.59 E-value=0.0051 Score=53.63 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=44.3
Q ss_pred CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g 351 (447)
++.++++++++.++++.|++.+.+.+||+|+ |+++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence 5678999999999999999999999999998 999999999999887653
No 193
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.57 E-value=0.0041 Score=65.03 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=62.0
Q ss_pred CccchHHHHHHhhhcc---cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 207 GIFNKIEYNLASRALK---LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 207 g~l~~~E~~~i~~~l~---l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
|+++ ++++...++. -...+|+++|| .++++++.++-+=||.-.|.++++.++||+++ |+++|+++..|+++
T Consensus 194 GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~ 267 (610)
T COG2905 194 GIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILR 267 (610)
T ss_pred ceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHH
Confidence 5555 4555555554 34667999999 68899999999999999999999999999973 89999999999998
Q ss_pred HhH
Q psy2372 284 KII 286 (447)
Q Consensus 284 ~~~ 286 (447)
...
T Consensus 268 l~s 270 (610)
T COG2905 268 LFS 270 (610)
T ss_pred hhC
Confidence 764
No 194
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.52 E-value=0.0041 Score=65.28 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=53.4
Q ss_pred ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII 286 (447)
Q Consensus 225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~ 286 (447)
+.+++++|++ .++.++++++++.++++.|.+++...+||+|++ ++++|+|+.+|+++...
T Consensus 142 ~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhccc
Confidence 5679999974 467899999999999999999999999999865 89999999999998753
No 195
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.51 E-value=0.63 Score=48.64 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=51.9
Q ss_pred CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEc-CCCCEEEEEeHHHHHHHHhcc
Q psy2372 294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVID-EYGELEGIITINDIIHSLIGD 352 (447)
Q Consensus 294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvD-e~G~~iGiVT~~DIle~i~ge 352 (447)
.+++++|.| ...++.+.+..++.+.+++++....||.| +-+.++|++...|++.....+
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 678899954 56889999999999999999999999999 457899999999999988754
No 196
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.37 E-value=0.0069 Score=49.35 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=46.0
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
..+.++|.+ +..+++.++++.++++.|.+++...+||+++ ++++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 346677763 5668899999999999999999999999983 69999999999875
No 197
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.009 Score=60.87 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEec
Q psy2372 366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL 444 (447)
Q Consensus 366 ~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~ 444 (447)
-|.+..+++....|++-.++.+ .- +-+...|+|+++.+++|..|.-||+|+|+|....|.+.+++||.++.++--
T Consensus 494 fg~f~~e~~~~~~~~~~~yg~~--~~--~~d~~~~~~~~i~~~lg~~~v~~Drv~~~~l~~~v~~~~d~~it~ig~~~~ 568 (574)
T COG3263 494 FGDFILEPSAKAADVALAYGLG--DG--YADKAQTLGELVTQLLGGAPVLGDRVEFGGLIWTVAEKEDNRVTKIGVRVE 568 (574)
T ss_pred hcchhhCcchhhhHHHHHhCCC--CC--hhhhhhcHHHHHHHHhCCCceeeeeEEEccEEEEEeecccCeeeeeeeecc
Confidence 3668889999999999999887 32 123568999999999999999999999999999999999999999988643
No 198
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.16 E-value=1.3 Score=44.77 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=48.6
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII 286 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~ 286 (447)
.+-.+++.-..++.++|+++++.+-+..+.+++..--.|+|+ -|.+.|+|+..|++..+-
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIV 324 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHh
Confidence 445556655568889999999999999998887766677775 599999999999998664
No 199
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0063 Score=63.41 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=55.9
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN 288 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~ 288 (447)
-.+..++++|.+ ++++++++++-+|+.+.+++++....||+|++ ++++|+++..|++..+.+.
T Consensus 193 ~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 193 EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHH
Confidence 456779999986 47899999999999999999999999999965 8999999999999887643
No 200
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.72 E-value=0.022 Score=56.45 Aligned_cols=62 Identities=10% Similarity=0.186 Sum_probs=54.8
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS 287 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~ 287 (447)
..+.++..+|+. +..++.+.+|++.+.+.|.-.++.-+||++++ .+++|+++.+|+++.++.
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHHH
Confidence 456778899994 56799999999999999999999999999966 899999999999998753
No 201
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.88 E-value=0.13 Score=55.59 Aligned_cols=66 Identities=14% Similarity=0.295 Sum_probs=59.6
Q ss_pred CCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEE
Q psy2372 366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT 442 (447)
Q Consensus 366 ~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~ 442 (447)
-|.|.++|+.+..|+...++.+ ++ ..|++.++..++|+-|..||++.+++..+.|.+ .||.++-++
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 561 (562)
T PRK05326 496 FGDFILEGDAKLADLALIYGLE--LD------QQTLGELIKQRLGGAPVVGDQVELGGIILTVAE---GRVTKVGLR 561 (562)
T ss_pred ccccccCcccchhHHHHHhccC--cc------cccHHHHHHHhcCCCCCCCCEeeecceEEEEec---Cceeeeeec
Confidence 5779999999999999999988 64 489999999999999999999999999999998 788887653
No 202
>KOG2550|consensus
Probab=94.67 E-value=0.036 Score=56.03 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372 207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284 (447)
Q Consensus 207 g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~ 284 (447)
|.++..+-+.++ =....+.++|+++. ++.+.+.+++++-+.+.++...++||++++ |+++-++...||.+.
T Consensus 156 G~vtsrdi~f~~----~~~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 156 GIITSRDIQFLE----DNSLLVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred EEEehhhhhhhh----cccchhhhhccccc--ccccccccHHHHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 667777776662 35567899999866 789999999999999999999999999965 999999999999874
No 203
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.64 E-value=0.067 Score=54.57 Aligned_cols=58 Identities=12% Similarity=0.307 Sum_probs=50.4
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS 287 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~ 287 (447)
..+.+.|. ..+.++++++++.+++..+.++++. +||+|++ ++++|+|+..++++.+..
T Consensus 302 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 302 QGLQDVLI--DDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred Cchhhhhc--cCCceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence 35777776 3566899999999999999999999 9999865 899999999999998754
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.87 E-value=0.38 Score=46.38 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh--------CC-----CccCCChhhhcCCCe-----e
Q psy2372 244 DDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS--------NR-----SIVNIDITSAIQPPL-----F 305 (447)
Q Consensus 244 ~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~--------~~-----~~~~~~v~~im~~~~-----~ 305 (447)
+-.++||+++- +++.|.+ .|+++-+=+..+++....+ .. .....++.+.+.+.. -
T Consensus 193 THDidEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 265 (309)
T COG1125 193 THDIDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEP 265 (309)
T ss_pred ecCHHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCc
Confidence 34467888764 5788887 3789999887777754321 11 111133445553321 3
Q ss_pred eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348 (447)
Q Consensus 306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~ 348 (447)
++......+++..+...+...+||+|+.|+++|.||.+|++..
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 4455566678888888899999999999999999999999864
No 205
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.55 E-value=0.25 Score=51.08 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=49.5
Q ss_pred eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC
Q psy2372 226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN 288 (447)
Q Consensus 226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~ 288 (447)
..+.+.|.+ +..+++.++++.+++..+.++.+. +||+|++ ++++|+|+..++++.+...
T Consensus 337 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 337 QGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred Cchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHhc
Confidence 457777753 456899999999999999998777 9999854 9999999999999988653
No 206
>KOG0476|consensus
Probab=90.47 E-value=1.5 Score=47.89 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=50.8
Q ss_pred cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC-CCeEEEEEEhhhHHHHh
Q psy2372 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS-ISKIIGTLNTKTLFKKI 285 (447)
Q Consensus 223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~-~~~ivGiv~~~DLl~~~ 285 (447)
...+.|+++|. +++.++..+.|..|..+.+..+....+|++|+. ..-++|.|..+.|...+
T Consensus 585 ~h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 585 VHTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eeEEEeeeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 34577999998 689999999999999999988879999999853 34568999999887544
No 207
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=84.20 E-value=60 Score=35.05 Aligned_cols=94 Identities=10% Similarity=0.082 Sum_probs=51.1
Q ss_pred CCHH-HHHHHHHhchhcCccchHHHHHHhhh-----cccCceeeceeeeeCCceEEEcCCCCH--HHHHHHHHhCCCcEE
Q psy2372 191 ITEE-EIYKLFREGFDIGIFNKIEYNLASRA-----LKLDDQCAITLMTPRMKVNFINIDDNI--EKNLIKILDSSYNYF 262 (447)
Q Consensus 191 ~s~~-el~~lv~~~~~~g~l~~~E~~~i~~~-----l~l~~~~V~dvM~pr~~v~~v~~~~tl--~e~~~~~~~~~~s~i 262 (447)
+|.+ ||...+.++..+-++=+--.+-=-.. ..+++.. ++-...+++.+..|.|- .+..+.+.+.+.-..
T Consensus 459 ~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~---v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 459 ISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQ---VQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred cCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHH---HHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 4444 99999988875432211101100000 1122222 23334577788877766 356667777766555
Q ss_pred E---EEeCC---CCeEEEEEEhhhHHHHhHh
Q psy2372 263 P---VYKKS---ISKIIGTLNTKTLFKKIIS 287 (447)
Q Consensus 263 P---V~~~~---~~~ivGiv~~~DLl~~~~~ 287 (447)
| +|+.+ ...+.|.++...+.+.+.+
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~ 566 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLER 566 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHH
Confidence 5 45522 2346788888888877643
No 208
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=78.49 E-value=4.2 Score=41.83 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=41.3
Q ss_pred CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372 236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII 286 (447)
Q Consensus 236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~ 286 (447)
+++.++++++++.+++..+.++++. +||+| + |+++|+|+..+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHh
Confidence 4567899999999999999888776 78887 4 89999999999998764
No 209
>KOG0474|consensus
Probab=75.28 E-value=5.6 Score=42.87 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=45.5
Q ss_pred ceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372 229 ITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI 285 (447)
Q Consensus 229 ~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~ 285 (447)
...|.| ...++++++++..+..++++-|.+..-|+... .+.+|+++.+|+.+.-
T Consensus 693 ~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARYR 746 (762)
T ss_pred ccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhHH
Confidence 345665 34589999999999999999999999999854 7889999999998643
No 210
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=63.55 E-value=44 Score=32.01 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=63.1
Q ss_pred eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-----ccCCChhhhcC
Q psy2372 227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-----IVNIDITSAIQ 301 (447)
Q Consensus 227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-----~~~~~v~~im~ 301 (447)
.++++..| .+.+|++..+.-.++-++.+++.--.|+|+ -|.+-|.|+..|++..+-.+-. .....++.+-+
T Consensus 134 ~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~ 209 (293)
T COG4535 134 DIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSR 209 (293)
T ss_pred cHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcC
Confidence 45666654 568999999999999999988888888885 5889999999999988753211 00123444444
Q ss_pred CCeeeCCCCCHHHHHHHHH
Q psy2372 302 PPLFIPETISTMQLLETFK 320 (447)
Q Consensus 302 ~~~~V~~~~~l~~al~~m~ 320 (447)
.-+.|..=+++.+--+.|.
T Consensus 210 ~~~~VrALT~IedFNe~F~ 228 (293)
T COG4535 210 HTWRVRALTEIEDFNEAFG 228 (293)
T ss_pred CceEEEecccHHHHHHHhc
Confidence 5566666666666655554
No 211
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=62.67 E-value=1.1e+02 Score=27.14 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy2372 145 SEKAAS 150 (447)
Q Consensus 145 p~~~~~ 150 (447)
|..++.
T Consensus 107 Pk~l~~ 112 (183)
T PF01595_consen 107 PKALAR 112 (183)
T ss_pred HHHHHH
Confidence 444333
No 212
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=53.80 E-value=5.2 Score=41.41 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=75.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhh-----cCchhhHHHHHHHHHHHHH
Q psy2372 11 YLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILS-----ENPIHFFSTVQIGITLISI 85 (447)
Q Consensus 11 ~~~~~~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~-----~~~~~~l~tilign~~~~~ 85 (447)
|=+.+.+..++++++++..-|..=|...|++.+.+..=+ .+..+.-+++-..++ +|..+++..=|+-.+++..
T Consensus 252 ~~~V~p~vAV~lff~~m~~vGMlEGmQiAffavakl~~e--ergs~~f~~Ktc~LlFkGnG~NLpgfmiGRQltVv~~fF 329 (545)
T TIGR00811 252 WEFIPNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKA--ERGDHPFARKTCELLFKGNGRNLPGFMVGRQMTVTLCFF 329 (545)
T ss_pred cCCCCccHHHHHHHHHHHHHHHhhhceeEEEEecCCCHH--HccCChhHHHHHHHHhcCCCCCCCceeecceeEEEEEEE
Confidence 334556788888888888888999999999999886544 223345566655655 3666777666655444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHH
Q psy2372 86 FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKA 148 (447)
Q Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~ 148 (447)
+++.+....+..--++ +-+|++++.- .+......-.+++.+.|-|..|--|..+|..+
T Consensus 330 vV~~iT~L~i~~G~~~--nIfGvsD~~Q---~ffn~g~~gaviTTIlasitwQ~aASafpiaF 387 (545)
T TIGR00811 330 IIARVTTLDIEVGVDD--NIFGVSDGIQ---EFFNLGFLGAIITTILASIAWQLVASAFPIAF 387 (545)
T ss_pred EeeeccccCCCCCCCC--ccccCcHHHH---HHHhhccHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3332211101000000 1135544321 12222222233444789999999999988654
No 213
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=52.82 E-value=24 Score=34.36 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=41.9
Q ss_pred CceeeceeeeeCCce--EEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372 224 DDQCAITLMTPRMKV--NFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284 (447)
Q Consensus 224 ~~~~V~dvM~pr~~v--~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~ 284 (447)
+..++.+.|.+.... -.+.....-.+++..+...+.+..||+|++ ++++|.++..+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~~ 308 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-GRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhhh
Confidence 445566666543311 123334445678888888999999999965 999999999998753
No 214
>KOG0476|consensus
Probab=52.30 E-value=14 Score=40.79 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=53.1
Q ss_pred CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC--CCEEEEEeHHHHHHHHhccc-cc
Q psy2372 294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEY--GELEGIITINDIIHSLIGDI-SN 355 (447)
Q Consensus 294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~--G~~iGiVT~~DIle~i~gei-~e 355 (447)
..+.++| +++.++..+++..|+-+.++....+..|+||.. --++|.|.+..+...+-+.+ +|
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence 4678899 889999999999999999988879999999853 45899999999988887767 55
No 215
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=50.71 E-value=21 Score=33.33 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=39.1
Q ss_pred CCceEEEEcCC-CC---EEEEEeHHHHHHHHhccc-ccc--cccceEEecCCeEEEeccCCHHHHHHHhCCC
Q psy2372 323 KSELSLVIDEY-GE---LEGIITINDIIHSLIGDI-SNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQ 387 (447)
Q Consensus 323 ~~~~a~VvDe~-G~---~iGiVT~~DIle~i~gei-~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~ 387 (447)
..+..+|.|++ |+ +.|++|-+||++++-+.- .+. -...+.+.+++. -.| .++++|+.+.+|.+
T Consensus 126 ~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~-fLD-D~t~~el~~~lg~~ 195 (204)
T PF04459_consen 126 EVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGV-FLD-DMTLEELEERLGVP 195 (204)
T ss_pred eEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCc-cCC-CCcHHHHHHHhCCc
Confidence 45667777763 43 899999999999997632 221 011111122222 222 47889999999987
No 216
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=47.74 E-value=2.4e+02 Score=26.37 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=24.3
Q ss_pred HHHHhhcchhHHHHHCHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Q psy2372 129 SLIFGELIPKRIAMQYSEK-AASIISPLMLFLLKLMGPFVKILT 171 (447)
Q Consensus 129 ~lifgEiiPK~la~~~p~~-~~~~~~~~l~~~~~i~~P~~~~~~ 171 (447)
-.++++. .|+.. +.|++ -+......+..+.+.+||++|.+.
T Consensus 140 y~l~~~~-~~~a~-~~~~~~~~~~~l~~~~~~~W~~YPi~w~l~ 181 (222)
T PF01036_consen 140 YLLFGPL-RRAAS-AVSPSVGLYNKLRNLTVVLWILYPIVWLLS 181 (222)
T ss_dssp HHHHTHH-HHHHT-TSTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-HHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445554 55554 44444 333344445566789999999885
No 217
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.24 E-value=35 Score=34.26 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=39.8
Q ss_pred ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS 287 (447)
Q Consensus 237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~ 287 (447)
++.+++.++++.+.+..+.+.+. -+||+|++ ++++|++....++.++..
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~-~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAPC-PVAVVDED-GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccCccchHHHHHHHHhcCCC-ceeEEcCC-CcEEEEecHHHHHHHHhc
Confidence 55678889999988888776654 57888865 899999999999987753
No 218
>KOG0475|consensus
Probab=40.57 E-value=53 Score=35.68 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=42.7
Q ss_pred ceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372 229 ITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI 285 (447)
Q Consensus 229 ~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~ 285 (447)
+++|.+ ..+++...++.+-+++++++-+.+...|.+ + |++.|+|+.||+++..
T Consensus 642 k~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~-G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 642 KDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-N-GILLGIITKKDCLRHT 694 (696)
T ss_pred eeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-C-CeeEeeeehHHHHHhh
Confidence 445542 345777888999999999999999998875 3 8999999999999864
No 219
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=37.50 E-value=65 Score=33.66 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=40.6
Q ss_pred CceEEEEcCC-C---CEEEEEeHHHHHHHHhccc-ccc-ccc-ceEEecCCeEEEeccCCHHHHHHHhCCC
Q psy2372 324 SELSLVIDEY-G---ELEGIITINDIIHSLIGDI-SNS-YQE-EIEFCEDGSWIISASMTFDRFKELLSNQ 387 (447)
Q Consensus 324 ~~~a~VvDe~-G---~~iGiVT~~DIle~i~gei-~e~-~~~-~~~~~~~~~~~v~g~~~i~~~~~~l~~~ 387 (447)
.+..+|.+++ | .+.|++|-+||++.+-|.. .+. --+ .+.+.+++ ++==.++++|+.+.+|.+
T Consensus 349 v~v~~i~N~ffG~~vtV~GLltg~Dii~~l~~~~~gd~lliP~~ml~~~~~--~fLDd~t~~~l~~~l~~~ 417 (433)
T TIGR03279 349 LDLHGLASDYWGQEITVTGLLTGQDLIAGLKGKDLGDGLLLPSVMLKHGEL--VFLDDLTVEEVAEALGTP 417 (433)
T ss_pred EEEEEeccCCCCCCeeEeecccHHHHHHHhCCCCCCCeEEecHHHhcCCCC--eECCCCcHHHHHHHhCCc
Confidence 4557788775 5 3799999999999997754 322 111 11122222 233458999999999987
No 220
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=36.61 E-value=94 Score=23.56 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=32.5
Q ss_pred eEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHh---------HHHHhhcCCCCCCCcEEEEcCEEEE
Q psy2372 361 IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLA---------GFVMTFLGHIPKISENFIWKNIKIE 427 (447)
Q Consensus 361 ~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~---------G~i~~~lg~iP~~g~~~~~~~~~f~ 427 (447)
+.+.++|.|.|.|.- ++.+.+..+++ - ++++. |..-+.-..=-+.||+|.++++.|+
T Consensus 3 I~~~~~g~~~V~g~~-ie~~~~~~~~~--~-------~e~~~rf~~~L~~~Gv~~~L~~~G~~~GD~V~Ig~~eFe 68 (69)
T PF09269_consen 3 IEREDEGVFVVEGPK-IERLVAMTNFD--D-------EESLRRFQRKLKKMGVEKALRKAGAKEGDTVRIGDYEFE 68 (69)
T ss_dssp EEEEETTEEEEE-HH-HHHHHTTEEE---T-------GGGHHHHHHHHHHTTHHHHHHTTT--TT-EEEETTEEEE
T ss_pred EEEcCCceEEEEChH-HHHHHHhcCCC--C-------HHHHHHHHHHHHHCCHHHHHHHcCCCCCCEEEEcCEEEE
Confidence 566788999999973 55565555554 2 23322 2222222333568999999999996
No 221
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=36.06 E-value=32 Score=22.62 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHH
Q psy2372 22 PGIRLIFLNGIFSMSEIAIITSKRVRL 48 (447)
Q Consensus 22 ~~~~ll~ls~~Fs~~E~al~s~~~~~l 48 (447)
+++.|+..++.|...+.| +.+..+.
T Consensus 5 l~l~CLA~aavF~~a~va--~a~~~~f 29 (37)
T PF11131_consen 5 LFLICLAAAAVFTAAGVA--NAPAHQF 29 (37)
T ss_pred HHHHHHHHHHHHHhhccc--CCchhhh
Confidence 356799999999999874 4444443
No 222
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=35.11 E-value=61 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372 324 SELSLVIDEYGELEGIITINDIIHSLI 350 (447)
Q Consensus 324 ~~~a~VvDe~G~~iGiVT~~DIle~i~ 350 (447)
...+-|+|++|...|+++.++.++.--
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHH
Confidence 456678899999999999999887653
No 223
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=33.89 E-value=1.5e+02 Score=22.43 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=34.8
Q ss_pred eEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccH------hHHHHhhcCCCCCCCcEEEEcCEEEE
Q psy2372 361 IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTL------AGFVMTFLGHIPKISENFIWKNIKIE 427 (447)
Q Consensus 361 ~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl------~G~i~~~lg~iP~~g~~~~~~~~~f~ 427 (447)
+.+.+++.|.|.|.- ++.+.+..+++ -| + ...-+ -|..-+.-..=-+.||.|.++++.|+
T Consensus 3 i~~~~~~~~~V~g~~-ier~~~~~~~~--~~--e--~~~~f~~~L~~~Gv~~~L~~~G~~~GD~V~Ig~~eFe 68 (69)
T TIGR03595 3 IERDEDGVFVVSGKK-IERWVAKTPFN--ND--E--NLRRFARKLKKLGVEDALRKAGAKDGDTVRIGDFEFE 68 (69)
T ss_pred EEECCCCeEEEechH-HHHHHHHcCCC--CH--H--HHHHHHHHHHHCCHHHHHHHcCCCCCCEEEEccEEEe
Confidence 345567899999863 56666666655 22 1 11111 12111111233577999999999996
No 224
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=33.12 E-value=64 Score=33.24 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHH---HHhhcCchhhHHHHHHHHHHHHHHHHH
Q psy2372 13 KLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSA---LILSENPIHFFSTVQIGITLISIFNGA 89 (447)
Q Consensus 13 ~~~~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~---~~l~~~~~~~l~tilign~~~~~~~~~ 89 (447)
|.++|..++++.++++.-+..=|...|++.+.+..=+.++++.++ +-+. ..--+|.+|+|..=|+...+++..+..
T Consensus 38 d~~pa~al~i~~~~I~WLaM~EGgQ~slVGL~pvd~~lYkeSHp~-tyk~~~la~~GdNLdRYl~GRQfmVvlvvFvIN~ 116 (512)
T PF03842_consen 38 DVHPAVALFIMWVGIVWLAMMEGGQGSLVGLPPVDRELYKESHPR-TYKNTSLAHKGDNLDRYLMGRQFMVVLVVFVINL 116 (512)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccceeeecCCCCCHHHHhhcCch-HhhhchhhcccccHHHHhhcceeEEEEEEEEhhh
Confidence 467788899999999888899999999999999887877777653 2222 233478889998888766655544433
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHH-HHHHHHHHHHhhcchhHHHHHC
Q psy2372 90 FGESSLVASLTPKIRFFSLMRDHAHEISLVIVV-FSITFFSLIFGELIPKRIAMQY 144 (447)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~l~lifgEiiPK~la~~~ 144 (447)
.+.+ +.+.-..+|+|++.. .+.+.+ +.+.+.+.+.|.+.++.-|.+-
T Consensus 117 cgsp-----l~~a~~vlGlP~~v~---~IFL~~GlaMil~t~~lGQLttQVNAshc 164 (512)
T PF03842_consen 117 CGSP-----LDPAVDVLGLPDWVK---FIFLDIGLAMILFTCVLGQLTTQVNASHC 164 (512)
T ss_pred cCCC-----CCCccccccCchHHH---HHhhccchHHHHHHHhhccccHhhhhhhh
Confidence 3322 222223356665422 122222 2233345678999988776554
No 225
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=32.70 E-value=51 Score=26.54 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=16.7
Q ss_pred CCCCCCCcEEEEcCEEEEEEEeecC
Q psy2372 410 GHIPKISENFIWKNIKIEVIDMNNN 434 (447)
Q Consensus 410 g~iP~~g~~~~~~~~~f~v~~~~~~ 434 (447)
.+ |+.|+.++++|-++.|.+....
T Consensus 64 ~~-P~~gd~v~~dG~~y~V~~~~~~ 87 (95)
T PF13856_consen 64 PK-PRRGDRVVIDGESYTVTRFQEE 87 (95)
T ss_dssp -----TT-EEEETTEEEEEEEEEEE
T ss_pred CC-CCCCCEEEECCeEEEEeEEecC
Confidence 45 9999999999999999887643
No 226
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=31.91 E-value=1.5e+02 Score=28.72 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372 154 PLMLFLLKLMGPFVKILTISTESILD 179 (447)
Q Consensus 154 ~~l~~~~~i~~P~~~~~~~~~~~~~r 179 (447)
+..|++.-+|+|++++-.++-+.-.+
T Consensus 210 Yi~YlliPiF~P~~~~Yg~~ynk~ck 235 (285)
T PF03563_consen 210 YICYLLIPIFYPIAYLYGWLYNKSCK 235 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999988776554
No 227
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=30.89 E-value=70 Score=34.17 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372 246 NIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK 283 (447)
Q Consensus 246 tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~ 283 (447)
.++++.+.+.+.|-+-++|+++ +++.|+++.+|+++
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 4567778888899999999973 79999999999986
No 228
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=30.43 E-value=3.9e+02 Score=29.40 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHH--HcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2372 29 LNGIFSMSEIAIITSKRVRLKKLI--EKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFF 106 (447)
Q Consensus 29 ls~~Fs~~E~al~s~~~~~l~~l~--~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (447)
.++ |+-.|.|.+++=-.=+=... ..++.+-+.+.+.+++--+..+.+.+-.-.+++..+.+...-+...+..++..+
T Consensus 345 ~~g-~TpteAa~~a~~~al~v~~~~~~~r~l~~~~l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l 423 (613)
T TIGR02123 345 LVG-YSPIRAAFYSIALTLIVSLLSRKDTRMGLGEIFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDL 423 (613)
T ss_pred HcC-cCHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHc
Confidence 455 88888887774322221111 223344556667777766666666655555555555554444555555555433
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhcchhH
Q psy2372 107 SLMRDHAHEISLVIVVFSITFFSLIFGELIPKR 139 (447)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~ 139 (447)
+..+ .....+++..+.+++|-.+|-+
T Consensus 424 ~~~~-------~~~~Lll~~l~~lilGm~l~~~ 449 (613)
T TIGR02123 424 AGGN-------LFLLLILTMIACIILGMGLPTT 449 (613)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHhcccHH
Confidence 2111 1222334445566778777654
No 229
>PF14044 NETI: NETI protein
Probab=30.15 E-value=70 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.9
Q ss_pred EEcCCCCHHHHHHHHHhCCCc
Q psy2372 240 FINIDDNIEKNLIKILDSSYN 260 (447)
Q Consensus 240 ~v~~~~tl~e~~~~~~~~~~s 260 (447)
.+.++.|+++.++.|.+.||.
T Consensus 3 eV~enETI~~CL~RM~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCC
Confidence 478899999999999999985
No 230
>PRK00568 carbon storage regulator; Provisional
Probab=29.92 E-value=87 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=20.5
Q ss_pred CCCcEEEEcC-EEEEEEEeecCeee
Q psy2372 414 KISENFIWKN-IKIEVIDMNNNKIE 437 (447)
Q Consensus 414 ~~g~~~~~~~-~~f~v~~~~~~ri~ 437 (447)
++||.+.+++ .+++|+++++.+|+
T Consensus 7 K~gEsI~Igd~I~I~Vl~i~g~~Vr 31 (76)
T PRK00568 7 KVNEGIVIDDNIHIKVISIDRGSVR 31 (76)
T ss_pred eCCCeEEeCCCeEEEEEEEcCCEEE
Confidence 6799988885 89999999999764
No 231
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=29.70 E-value=92 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=19.4
Q ss_pred CCCcEEEEcC-EEEEEEEeecCeee
Q psy2372 414 KISENFIWKN-IKIEVIDMNNNKIE 437 (447)
Q Consensus 414 ~~g~~~~~~~-~~f~v~~~~~~ri~ 437 (447)
++||.+.+++ .+++|+++++.+++
T Consensus 7 k~gE~I~Ig~~I~I~Vl~i~~~~Vk 31 (54)
T PF02599_consen 7 KVGESIVIGDDIEITVLEISGGQVK 31 (54)
T ss_dssp ETT-EEEETTTEEEEEEEEETTEEE
T ss_pred cCCCEEEECCCEEEEEEEEcCCEEE
Confidence 5799998885 89999999988764
No 232
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=27.72 E-value=3.8e+02 Score=22.75 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=21.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHC
Q psy2372 109 MRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQY 144 (447)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~ 144 (447)
++.+...++..+.+++...+..+.+..+.|..-..+
T Consensus 57 ~~~~~~~iaf~~~f~~~~~i~~~i~~~l~~~~~~~~ 92 (146)
T PF02674_consen 57 SPPFANIIAFIILFVLVYIIVRIIGKLLRRIVKKPF 92 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 334555566666666666666667776666554333
No 233
>PF15284 PAGK: Phage-encoded virulence factor
Probab=27.28 E-value=81 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2372 19 SLSPGIRLIFLNGIFSMSEIAIITS 43 (447)
Q Consensus 19 ~~~~~~~ll~ls~~Fs~~E~al~s~ 43 (447)
.+++.+++++.++.||++-+|=-+-
T Consensus 6 sifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 6 SIFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhhC
Confidence 3677778889999999998875443
No 234
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=27.07 E-value=58 Score=29.79 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=36.5
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.+ ++++.+.++.+......++.+.++++|.+-..|..+|++
T Consensus 33 ~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPeP 84 (186)
T cd04406 33 TEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRDLPNP 84 (186)
T ss_pred CCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHhCCCc
Confidence 568899999876 777888887541011112346789999999999999964
No 235
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=26.58 E-value=61 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=18.7
Q ss_pred HHHHHHhchhcCccchHHHHHHhhhcc
Q psy2372 196 IYKLFREGFDIGIFNKIEYNLASRALK 222 (447)
Q Consensus 196 l~~lv~~~~~~g~l~~~E~~~i~~~l~ 222 (447)
|+.|+..+...|.++++|++.|...++
T Consensus 3 lrami~aAkADG~id~~E~~~I~~~~~ 29 (95)
T cd07178 3 LRAMIAAAKADGHIDEAERARILGELG 29 (95)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 466777777777777777777766554
No 236
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=25.45 E-value=66 Score=26.71 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=13.5
Q ss_pred ceEEEEcCCCCEEEEEeH
Q psy2372 325 ELSLVIDEYGELEGIITI 342 (447)
Q Consensus 325 ~~a~VvDe~G~~iGiVT~ 342 (447)
-.+||.|++|+++|+|..
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 467999989999999863
No 237
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=25.26 E-value=33 Score=27.08 Aligned_cols=51 Identities=10% Similarity=-0.100 Sum_probs=37.2
Q ss_pred CeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcC
Q psy2372 367 GSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKN 423 (447)
Q Consensus 367 ~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~ 423 (447)
-.+-+++..++.|+-|.||++ .+ +-..-.+.|-- .-+++.|+.||++.+..
T Consensus 25 ~~~~~~~~~tvkd~IEsLGVP--~t---EV~~i~vNG~~-v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 25 FTHPFDGGATVKDVIESLGVP--HT---EVGLILVNGRP-VDFDYRLKDGDRVAVYP 75 (81)
T ss_pred eEEecCCCCcHHHHHHHcCCC--hH---HeEEEEECCEE-CCCcccCCCCCEEEEEe
Confidence 346789999999999999987 54 12344556633 33579999999987764
No 238
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=25.15 E-value=1e+02 Score=23.36 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHhccc-cc--c-cccceEEecCCeEEEeccC
Q psy2372 344 DIIHSLIGDI-SN--S-YQEEIEFCEDGSWIISASM 375 (447)
Q Consensus 344 DIle~i~gei-~e--~-~~~~~~~~~~~~~~v~g~~ 375 (447)
.+.|..+..+ .. + +.+......+++|+|+|+.
T Consensus 4 ~iAE~~l~~iYG~~~~~ekP~~v~~~~~~WiV~Gtl 39 (66)
T PF15631_consen 4 KIAEIYLKPIYGKEIEEEKPYRVTLDGDSWIVEGTL 39 (66)
T ss_pred HHHHHHHHHHcCchhhhcCCeEEecCCCeEEEEeec
Confidence 3455555544 22 2 5666667788889999985
No 239
>PRK01712 carbon storage regulator; Provisional
Probab=24.86 E-value=1.4e+02 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=20.3
Q ss_pred CCCcEEEEcC-EEEEEEEeecCeee
Q psy2372 414 KISENFIWKN-IKIEVIDMNNNKIE 437 (447)
Q Consensus 414 ~~g~~~~~~~-~~f~v~~~~~~ri~ 437 (447)
++||.+.+++ .+++|+++++++|+
T Consensus 7 k~gE~I~Igd~I~I~V~~i~~~~Vr 31 (64)
T PRK01712 7 KVGESLMIGDDIEVTVLGVKGNQVR 31 (64)
T ss_pred cCCCEEEeCCCEEEEEEEEeCCEEE
Confidence 5799998886 89999999998753
No 240
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=24.59 E-value=65 Score=30.29 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=37.3
Q ss_pred cCCeEEEeccCC-----HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-----FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-----i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|... ++++.+.++.+ -+.....+.+++++.+...|..+|++
T Consensus 68 ~eGiFR~~G~~~~~~~~i~~l~~~ld~~--~~~~~~~~~~~va~~LK~fLr~LpeP 121 (220)
T cd04380 68 QEGLFEEPGLPSEPGELLAEIRDALDTG--SPFNSPGSAESVAEALLLFLESLPDP 121 (220)
T ss_pred ccCcccCCCcccchHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 456777777777 78888888876 33223457899999999999999974
No 241
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=24.18 E-value=67 Score=29.38 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=35.2
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCC-CCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQV-NFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~-~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.+ ++++.+.++.+. .... ++.+.++++|.+-..+..+|++
T Consensus 33 ~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~-~~~d~h~va~lLK~flReLPep 84 (186)
T cd04407 33 TEGIYRKSGSANRMKELHQLLQADPENVKL-ENYPIHAITGLLKQWLRELPEP 84 (186)
T ss_pred CCceeecCCCHHHHHHHHHHHhcCCcccCc-ccCCHHHHHHHHHHHHHhCCCc
Confidence 568888998865 666777776431 0111 2345789999999999999974
No 242
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=23.95 E-value=66 Score=29.62 Aligned_cols=51 Identities=14% Similarity=0.334 Sum_probs=35.0
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.. ++++.+.++-......+.+.+.++++|.+-..+..+|++
T Consensus 40 ~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPeP 91 (199)
T cd04390 40 EEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRELPEP 91 (199)
T ss_pred CCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHHHHHHHHhCCCc
Confidence 467788888764 667777776541111112346789999999999999964
No 243
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=23.86 E-value=2.8e+02 Score=30.48 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCC----------hhhhc--CCCeeeCCCCCHHHH
Q psy2372 248 EKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNID----------ITSAI--QPPLFIPETISTMQL 315 (447)
Q Consensus 248 ~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~----------v~~im--~~~~~V~~~~~l~~a 315 (447)
+++.+.+...+ ..+.+.|.+ |.++.+....++++....-.-..... +.-.+ +.|..|.......+.
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~~-G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDET-GCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcCC-ceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 44555555555 577777754 89999888888776543211000011 11111 345555544443433
Q ss_pred HHHHHHcCCceEEEEcCCCCEEEEEe
Q psy2372 316 LETFKKNKSELSLVIDEYGELEGIIT 341 (447)
Q Consensus 316 l~~m~~~~~~~a~VvDe~G~~iGiVT 341 (447)
++.-.+..+||.|++|+++|+++
T Consensus 140 ---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 140 ---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ---ccCceEEeeEEEcCCCCEEEEEE
Confidence 33445778999999999999996
No 244
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.60 E-value=67 Score=29.95 Aligned_cols=51 Identities=14% Similarity=0.335 Sum_probs=35.7
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.+ ++.+.+.++...+...+++.+.++++|.+-..+..+|++
T Consensus 27 ~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPeP 78 (206)
T cd04376 27 TVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDP 78 (206)
T ss_pred CCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCc
Confidence 668889999765 666777776542111112346789999999999999974
No 245
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=23.45 E-value=67 Score=29.62 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=35.5
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.. ++++.+.++-....+.-++.+.++++|++-.-|..+|++
T Consensus 35 ~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPeP 86 (193)
T cd04382 35 EEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEP 86 (193)
T ss_pred CCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCc
Confidence 568899999866 666777775321122112336789999999999999974
No 246
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.32 E-value=2.6e+02 Score=21.71 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=27.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCHHHHHHHHHhchh
Q psy2372 150 SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205 (447)
Q Consensus 150 ~~~~~~l~~~~~i~~P~~~~~~~~~~~~~rl~g~~~~~~~~~s~~el~~lv~~~~~ 205 (447)
.++++|+-+|..+..|+-.++.+.++ .+....+|++|.+.+-+...+
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk---------~~~~~gLs~~d~~~L~~L~~~ 50 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSK---------WKSSQGLSEEDEQRLQELYEQ 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------cccCCCCCHHHHHHHHHHHHH
Confidence 35566777777677777655554432 122456788877666554443
No 247
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=22.97 E-value=62 Score=29.74 Aligned_cols=51 Identities=10% Similarity=0.292 Sum_probs=34.9
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCC---CCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQ---VNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~---~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.+ ++++.+.++-+ .+++.....+.++++|.+-.-+..+|++
T Consensus 34 ~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~p 88 (194)
T cd04372 34 SEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIP 88 (194)
T ss_pred cCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCc
Confidence 468899999864 77777777632 0132111125679999999999999975
No 248
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=22.70 E-value=1.9e+02 Score=21.23 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHhchhcCc----cchHHHHHHhhhcccCceeeceeee
Q psy2372 188 NDLITEEEIYKLFREGFDIGI----FNKIEYNLASRALKLDDQCAITLMT 233 (447)
Q Consensus 188 ~~~~s~~el~~lv~~~~~~g~----l~~~E~~~i~~~l~l~~~~V~dvM~ 233 (447)
+..+|.+++..|-+..+..|. .+..+++-+..-+.+++..+.-.|.
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfq 54 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMH 54 (58)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecc
Confidence 567999999999999999998 9999999998888888777766653
No 249
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.60 E-value=1e+02 Score=28.05 Aligned_cols=51 Identities=14% Similarity=0.342 Sum_probs=35.7
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCC--CCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVN--FPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~--l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.. ++.+.+.++-+.. ++..+..+.++++|.+-..+..+|++
T Consensus 34 ~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPep 87 (187)
T cd04403 34 VDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEP 87 (187)
T ss_pred cCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCCC
Confidence 468899999976 5667777665311 22111236789999999999999974
No 250
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=22.20 E-value=85 Score=29.24 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=35.5
Q ss_pred cCCeEEEeccCCHHHHHHHhCCCC-CCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMTFDRFKELLSNQV-NFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~i~~~~~~l~~~~-~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
..|-|.++|+..+.++.+.++-+. ..+. +..+.++++|.+-..|...|++
T Consensus 33 ~eGIYRvsgs~~~~~lk~~~d~~~~~~d~-~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 33 SSTLYRTQSSSSLTELRQILDCDAASVDL-EQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred CCceeeCCCccHHHHHHHHHhcCCCCCCc-ccccHHHHHHHHHHHHHhCCCc
Confidence 467888888888888877776531 1111 2346779999999999999964
No 251
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.83 E-value=1.6e+02 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcchhH
Q psy2372 119 VIVVFSITFFSLIFGELIPKR 139 (447)
Q Consensus 119 ~~~~~~~t~l~lifgEiiPK~ 139 (447)
.+..++.+++..++++++||.
T Consensus 35 ~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 35 AIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 344556677778888888873
No 252
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.57 E-value=78 Score=28.95 Aligned_cols=50 Identities=12% Similarity=0.295 Sum_probs=36.0
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.+ ++++.+.++-. +.+.+...+.+++||.+-.-+..+|++
T Consensus 40 ~EGIFR~~G~~~~i~~l~~~~d~~-~~~~~~~~d~h~va~lLK~fLReLpeP 90 (187)
T cd04389 40 TEGIFRVPGDIDEVNELKLRVDQW-DYPLSGLEDPHVPASLLKLWLRELEEP 90 (187)
T ss_pred CCCeeeCCCCHHHHHHHHHHHhcC-CCCccccCCHHHHHHHHHHHHHhCCCC
Confidence 567888888865 67777777653 133222346789999999999999974
No 253
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=21.51 E-value=1.6e+02 Score=30.91 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhh---cCchhhHHHHHHHHHHHHHHHHH
Q psy2372 13 KLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILS---ENPIHFFSTVQIGITLISIFNGA 89 (447)
Q Consensus 13 ~~~~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~---~~~~~~l~tilign~~~~~~~~~ 89 (447)
|.++|..++++.+.++.-+..=|...|+..+.+.+=+.++++ +..+++...++ +|.++++..=|+-..++..+++.
T Consensus 38 d~~p~~a~~i~~~~i~wvgMlEGmQiAfakLp~~eR~lyk~s-~~f~~Ktc~LlfkG~NLp~fmiGRQ~~Vv~~~FvVnl 116 (545)
T TIGR00811 38 DAHPVAALVIMWLGILWMSMVEGGQCSMVGLPPIDRDLYKES-HPITYKICSLGHKGNNLDRYLMGRQFMVIFINFTINL 116 (545)
T ss_pred cCChHHHHHHHHHHHHHHHHHhhhhhhhccCCccccccccCC-ChhHHHhhHHhhCCCCCccceecceeeEEEEEEEeec
Confidence 467889999999999999999999999988887554444444 33444444444 77788887777655544443332
Q ss_pred HHHHHHHHHHHHHHhhhcccchhh-hHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHH
Q psy2372 90 FGESSLVASLTPKIRFFSLMRDHA-HEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKA 148 (447)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~ 148 (447)
-+++. +--.-+|+|++.- ..+..++ -+.+++.+.|-+..|--|...|..+
T Consensus 117 ~i~P~------~g~nVfGlpD~~q~iFL~~Gl---~m~v~TtIlgqLt~QvnAS~~midF 167 (545)
T TIGR00811 117 CGAPL------EGAEVLGLPEILTDIFLGSGI---AMVLTVVTIGQLTAQVNASHCMLDY 167 (545)
T ss_pred ccCCC------CCCCeecCCHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 21110 0011245554322 1112222 2334456789999999888887654
No 254
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.25 E-value=74 Score=29.44 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=35.5
Q ss_pred cCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372 365 EDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI 415 (447)
Q Consensus 365 ~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 415 (447)
.+|-|.++|+.. ++++.+.++...+..+..+.+.++++|.+-..|..+|++
T Consensus 34 ~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPeP 85 (200)
T cd04408 34 VQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLKELPEP 85 (200)
T ss_pred CcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHHhCCCc
Confidence 567899999865 777777776441111111346789999999999999964
No 255
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=21.24 E-value=4.9e+02 Score=25.71 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHH
Q psy2372 20 LSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQ 77 (447)
Q Consensus 20 ~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~til 77 (447)
+.+-+++.+.|++|.+.-..+-..+-.|.+. .+.+..+.-...+++|-+....++
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~~~~~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSGGRSYLRRPLWWIGLLL 59 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccchhhHHHhhHHHHHHHHH
Confidence 3444556677888888876665444333332 222222334577889988877665
No 256
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.09 E-value=1.7e+02 Score=22.71 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCHHHHHHHHHhc
Q psy2372 150 SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREG 203 (447)
Q Consensus 150 ~~~~~~l~~~~~i~~P~~~~~~~~~~~~~rl~g~~~~~~~~~s~~el~~lv~~~ 203 (447)
.+++.|+-+|..+..|+=.++...+ +.+....+|++|.+.+-+..
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~s---------k~~~~~~Ls~~d~~~L~~L~ 48 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRS---------KRQGSQGLSQEEQQRLAQLT 48 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcc---------cccCCCCCCHHHHHHHHHHH
Confidence 3556677777777777755454322 12234568888865554433
No 257
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=20.98 E-value=6.4e+02 Score=26.13 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2372 28 FLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFS 107 (447)
Q Consensus 28 ~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (447)
+..+.|+..|.|.+++=-.=+=.....++.+-|.+.+...+--+..+.+.+-...++.....+...-+...+..++..++
T Consensus 230 i~~g~~t~teaa~~~~~~~l~i~~~~~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~ 309 (416)
T PF06808_consen 230 IYLGIFTPTEAAAVAVVYALVIGLFVYRRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLS 309 (416)
T ss_pred hhhcccchhhhhhhhHHHHHHHHHhhhcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcC
Confidence 56778888888877653332222222333344555566666555555555444444444444433334444555544332
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhcchhH
Q psy2372 108 LMRDHAHEISLVIVVFSITFFSLIFGELIPKR 139 (447)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~ 139 (447)
.++ ....+++.++.+++|=.+|-.
T Consensus 310 ~~~--------~~~l~l~~l~~lilG~~m~~~ 333 (416)
T PF06808_consen 310 GSP--------WLVLLLIMLILLILGMFMDTT 333 (416)
T ss_pred cch--------HHHHHHHHHHHHHHhccccHH
Confidence 211 122233444455666655543
No 258
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=20.91 E-value=1.8e+02 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=20.3
Q ss_pred CCCcEEEEcC-EEEEEEEeecCeee
Q psy2372 414 KISENFIWKN-IKIEVIDMNNNKIE 437 (447)
Q Consensus 414 ~~g~~~~~~~-~~f~v~~~~~~ri~ 437 (447)
++||.+.+++ .+++|++++++.|+
T Consensus 7 k~gE~I~Igd~I~I~Vl~i~g~~Vr 31 (69)
T TIGR00202 7 KVNESIQIGDDIEVKVLSVKGDQVK 31 (69)
T ss_pred cCCCEEEeCCCEEEEEEEEcCCeEE
Confidence 6799988885 89999999988764
No 259
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.17 E-value=5.8e+02 Score=22.16 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=11.7
Q ss_pred cchHHHHHHhhhcccC
Q psy2372 209 FNKIEYNLASRALKLD 224 (447)
Q Consensus 209 l~~~E~~~i~~~l~l~ 224 (447)
++++|+..+...+.-+
T Consensus 79 Lt~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 79 LTPEEKAVLREFYIQG 94 (151)
T ss_pred CCHHHHHHHHHHHHCC
Confidence 7888888887666544
Done!