RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2372
(447 letters)
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 313 bits (803), Expect = e-103
Identities = 142/437 (32%), Positives = 256/437 (58%), Gaps = 19/437 (4%)
Query: 16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFST 75
++L+L + LI L+ FS +E A+++ +R RL++L E+G+ A +AL L E + ST
Sbjct: 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKRAKAALKLIERLNRYLST 62
Query: 76 VQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGEL 135
VQ+GITL+S+ GA GE +L A L P + +S + ITF ++FGEL
Sbjct: 63 VQLGITLVSLLLGAVGEPALAALLEPLLEALG--------LSAALSFAIITFLHVVFGEL 114
Query: 136 IPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEE 195
+PK IA++ EK A +I+P + F +L+ P + +L +IL +F ++ + + +T E
Sbjct: 115 VPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTE 174
Query: 196 IY-KLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKI 254
+L E + G+ + E + + L LDD+ +MTPR + +++ D +E+ + I
Sbjct: 175 EELELVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELI 234
Query: 255 LDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQ 314
L+S ++ PVY + IIG ++ K L + ++ +S ++D+ ++PPLF+PET+S
Sbjct: 235 LESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--DLDLRVLVRPPLFVPETLSLSD 292
Query: 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS----NSYQEEIEFCEDGSWI 370
LLE F++ ++ +++V+DEYG +EG++T+ DII ++G+I +E+I +D W+
Sbjct: 293 LLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWL 352
Query: 371 ISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVID 430
+ + + +ELL + +Y T+AG V++ LG IPK+ E+ + ++ EV+D
Sbjct: 353 VDGRVPLEELEELL----GIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLRFEVLD 408
Query: 431 MNNNKIERLLVTILNDK 447
M+ +I+++L+ L DK
Sbjct: 409 MDGRRIDKVLIVRLKDK 425
>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic
ion transport and metabolism].
Length = 423
Score = 182 bits (465), Expect = 6e-53
Identities = 124/429 (28%), Positives = 212/429 (49%), Gaps = 26/429 (6%)
Query: 24 IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLI 83
I LI ++ FS SE A+ R RL+ L ++G+ GA L E P T+ IG L+
Sbjct: 10 IILIIISAFFSGSETALTALNRYRLRHLAKQGNRGAKRVEKLLEKPDRLIGTILIGNNLV 69
Query: 84 SIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
+I S+L L IR + + + I +TF L+F E++PK IA
Sbjct: 70 NIL-----ASALATILG--IRLYG-------DAGVAIATGVLTFVILVFAEVLPKTIAAL 115
Query: 144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYK--KNDLITEEEIYKLFR 201
Y E+ A S ++ L++L GP V +L T +L + I + L ++EE+
Sbjct: 116 YPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVN 175
Query: 202 EGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY 261
E G NKI+ ++ L L++ +M PR ++ I+IDD E+ + ++L S +
Sbjct: 176 ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTR 235
Query: 262 FPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKK 321
P+Y+ + IIG L+ + L + + DI A P F+PE L F++
Sbjct: 236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQR 295
Query: 322 NKSELSLVIDEYGELEGIITINDIIHSLIGDI---SNSYQEEIEFCEDGSWIISASMTF- 377
NK ++LV+DEYG+++G++T+ DI+ ++GD ++ +E+ DGS+II S
Sbjct: 296 NKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVR 355
Query: 378 DRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE 437
D + L N P + +R T+ G V+ L IP+ + +I+++ + N+I+
Sbjct: 356 DLNRAL---DWNLPDEDAR---TINGLVLEELEEIPEEGQAVRIGGYRIDILKVQENRIK 409
Query: 438 RLLVTILND 446
++ +T L
Sbjct: 410 QVKITPLKA 418
>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21. This
transmembrane region has no known function. Many of the
sequences in this family are annotated as hemolysins,
however this is due to a similarity to Treponema
hyodysenteriae hemolysin C that does not contain this
domain. This domain is found in the N-terminus of the
proteins adjacent to two intracellular CBS domains
pfam00571.
Length = 182
Score = 133 bits (338), Expect = 3e-37
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 14/188 (7%)
Query: 26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
L+ L+ FS SE A+++ R RL++L E+G+ GA L L NP +T+ +G TL +I
Sbjct: 9 LLLLSAFFSASETALVSLSRSRLEELAEEGNKGARRLLKLLANPDRLLATLLLGNTLANI 68
Query: 86 FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
GA + + +++ T L+FGE++PK +A +
Sbjct: 69 LLGALAT-------------LAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNP 115
Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205
E+ A ++P + L+KL+ P V +L+ + +L +F +K + +TEEE+ L EG +
Sbjct: 116 ERIALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVK-PEGPAVTEEELRALVDEGEE 174
Query: 206 IGIFNKIE 213
G+ + E
Sbjct: 175 EGVIEEEE 182
>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism].
Length = 293
Score = 120 bits (304), Expect = 3e-31
Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 11/232 (4%)
Query: 220 ALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTK 279
+ + D +M PR ++ + + +++ L I++S+++ FPV + + G L K
Sbjct: 61 VMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAK 120
Query: 280 TLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339
L + S+ +I ++P + +PE+ +LL+ F+ ++ +++VIDE+G + G+
Sbjct: 121 DLLPFMRSDAEPFDIK--ELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGL 178
Query: 340 ITINDIIHSLIGDISNSYQEE----IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKIS 395
+TI DI+ ++GDI + Y EE I +W + A + F E +F
Sbjct: 179 VTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGT--HFS---D 233
Query: 396 RNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK 447
T+ G VM GH+P E + +V ++ ++ +L VT+ +D
Sbjct: 234 EEVDTIGGLVMQAFGHLPARGEKIDIGGYQFKVARADSRRVIQLHVTVPDDS 285
>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional.
Length = 413
Score = 123 bits (310), Expect = 4e-31
Identities = 111/429 (25%), Positives = 203/429 (47%), Gaps = 33/429 (7%)
Query: 26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
++ ++ FS SE ++T R RL+ + ++G+ A L P S V IG L++I
Sbjct: 1 MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNI 60
Query: 86 FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
A G ++V MR + + + I +TF L+F E++PK IA Y
Sbjct: 61 LASALG--TIVG-----------MRLYG-DAGVAIATGVLTFVVLVFAEVLPKTIAALYP 106
Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYK--KNDLITEEEIYKLFREG 203
EK A S L+ L LM P V +L T ++ + IK + +++EE+ + E
Sbjct: 107 EKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHES 166
Query: 204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263
I + + L S L L+ +M PR ++ I+I+D+ + L ++ S +
Sbjct: 167 -RSQISRRNQDMLLS-VLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIV 224
Query: 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
+Y+ S+ I L + ++ + + ++ A F+PE L F++NK
Sbjct: 225 LYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKFQRNK 284
Query: 324 SELSLVIDEYGELEGIITINDIIHSLIGD----ISNSYQEEIEFCEDGSWIISASMTFDR 379
++ LV+DEYG+++G++T+ DI+ ++GD +S + EE+ DGS II +
Sbjct: 285 KKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN--- 341
Query: 380 FKELLSNQV---NFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKI 436
+E+ N+ + P +R T+ G ++ L IP I+++D+ +N I
Sbjct: 342 VREI--NKAFNWHLPEDDAR---TVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMI 396
Query: 437 ERLLVTILN 445
+++ VT +
Sbjct: 397 KQVKVTPVK 405
>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE. Members
of this protein family are exclusive to the
Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldC is a protein
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. GldE was
discovered because of its adjacency to GldD in F.
johnsonii. Overexpression of GldE partially supresses
the effects of a GldB point mutant suggesting that GldB
and GldE interact. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Not all Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility and in fact some
do not appear to express the gliding phenotype.
Length = 408
Score = 122 bits (307), Expect = 1e-30
Identities = 107/428 (25%), Positives = 199/428 (46%), Gaps = 30/428 (7%)
Query: 24 IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQ-----I 78
I L+ L+ + S SE+A + L E S + L + P +T+ I
Sbjct: 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQIVINLLDRPKKLLATILIANNFI 61
Query: 79 GITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPK 138
I ++ +F + ++ + T +RF I V +TF L+FGE++PK
Sbjct: 62 NIAIVLLFT-SLSDNLFGSFNTELLRFL-------------IEVVIVTFLILLFGEILPK 107
Query: 139 RIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYK 198
A + + K A ++ + L K+ P L T I +K+++ ++
Sbjct: 108 VYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHK--KFGKQKSNISVDQLSQA 165
Query: 199 LFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSS 258
L E D K E + + + +M PR+ + ++I+ + + + KI+++
Sbjct: 166 L--ELTDEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENG 223
Query: 259 YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLET 318
Y+ PVYK++I I G L K L + N+ N D S ++ P F+PE LL
Sbjct: 224 YSRIPVYKETIDNITGVLYIKDLLPHL--NKK--NFDWQSLLREPYFVPENKKLDDLLRD 279
Query: 319 FKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEF---CEDGSWIISASM 375
F++ K+ L++V+DEYG G++T+ DII ++GDIS+ + +E +D +++
Sbjct: 280 FQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKT 339
Query: 376 TFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNK 435
+ F ++L + + ++ TLAGF++ G PK E ++N + + M+ +
Sbjct: 340 SLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFEFTIEAMDKKR 399
Query: 436 IERLLVTI 443
I+++ VTI
Sbjct: 400 IKQVKVTI 407
>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with the CorC_HlyC domain. CorC_HlyC
is a transporter associated domain. This small domain is
found in Na+/H+ antiporters, in proteins involved in
magnesium and cobalt efflux, and in association with
some proteins of unknown function. The function of the
CorC_HlyC domain is uncertain but it might be involved
in modulating transport of ion substrates. CBS is a
small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
The second CBS domain in this CD is degenerate.
Length = 111
Score = 104 bits (261), Expect = 5e-27
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297
+ ++ DD +E+ L I +S ++ FPVY + IIG ++ K L + + ++D+
Sbjct: 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE--DLDLR 60
Query: 298 SAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
++PPLF+PE+ LLE +K +S +++V+DEYG G++T+ DI+
Sbjct: 61 DLLRPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109
>gnl|CDD|215020 smart01091, CorC_HlyC, Transporter associated domain. This small
domain is found in a family of proteins with the DUF21
domain and two CBS domains with this domain found at the
C-terminus of the proteins, the domain is also found at
the C terminus of some Na+/H+ antiporters. This domain
is also found in CorC that is involved in Magnesium and
cobalt efflux. The function of this domain is uncertain
but might be involved in modulating transport of ion
substrates.
Length = 78
Score = 76.7 bits (190), Expect = 2e-17
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
+DGS+++ D ELL ++ P Y TL G V+ LG IP++ ++ +
Sbjct: 4 DDGSYLVDGRTPIDDLNELL--GLDLP---EEEYDTLGGLVLEELGRIPEVGDSVEIGGL 58
Query: 425 KIEVIDMNNNKIERLLVTIL 444
+ EV++++ +I+++ VT
Sbjct: 59 RFEVLEVDGRRIDKVRVTRP 78
>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC;
Provisional.
Length = 292
Score = 77.5 bits (191), Expect = 6e-16
Identities = 54/226 (23%), Positives = 109/226 (48%), Gaps = 11/226 (4%)
Query: 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284
DQ +M PR ++ + + +++ L I++S+++ FPV + I G L K L
Sbjct: 66 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125
Query: 285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
+ S+ ++D ++ + +PE+ ++L+ F+ + +++VIDE+G + G++TI D
Sbjct: 126 MRSDAEAFSMD--KVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED 183
Query: 345 IIHSLIGDISNSYQEE----IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHT 400
I+ ++G+I + Y EE +W + A + + F E + T
Sbjct: 184 ILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFS-----DEEVDT 238
Query: 401 LAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
+ G VM GH+P E + +V ++ +I ++ V I +D
Sbjct: 239 IGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQVHVKIPDD 284
>gnl|CDD|217581 pfam03471, CorC_HlyC, Transporter associated domain. This small
domain is found in a family of proteins with the
pfam01595 domain and two CBS domains with this domain
found at the C-terminus of the proteins, the domain is
also found at the C terminus of some Na+/H+ antiporters.
This domain is also found in CorC that is involved in
Magnesium and cobalt efflux. The function of this domain
is uncertain but might be involved in modulating
transport of ion substrates.
Length = 80
Score = 67.6 bits (166), Expect = 2e-14
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFI--WK 422
+DGS+++ D ELL ++ P +Y TLAG V+ LG IP++ +
Sbjct: 4 DDGSYLVDGRAPLDDLNELL--GLDLP---EEDYDTLAGLVLELLGRIPEVGDKVTVELG 58
Query: 423 NIKIEVIDMNNNKIERLLVTIL 444
++ V++++ +I+++ VT L
Sbjct: 59 GLRFTVLEVDGRRIKKVRVTKL 80
>gnl|CDD|201313 pfam00571, CBS, CBS domain. CBS domains are small intracellular
modules that pair together to form a stable globular
domain. This family represents a single CBS domain.
Pairs of these domains have been termed a Bateman
domain. CBS domains have been shown to bind ligands with
an adenosyl group such as AMP, ATP and S-AdoMet. CBS
domains are found attached to a wide range of other
protein domains suggesting that CBS domains may play a
regulatory role making proteins sensitive to adenosyl
carrying ligands. The region containing the CBS domains
in Cystathionine-beta synthase is involved in regulation
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP.
The CBS domains from IMPDH and the chloride channel CLC2
bind ATP.
Length = 57
Score = 42.2 bits (100), Expect = 1e-05
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
+ +P S + LE ++N V+DE G+L GI+T+ D++ +L+
Sbjct: 8 DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57
>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 113
Score = 42.8 bits (101), Expect = 3e-05
Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITS- 298
++ DD + + L +L+ + PV +++G + + L + + + +
Sbjct: 5 TVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDV 63
Query: 299 AIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
+ + + S + E ++ V+D+ G L GI+T +DI+
Sbjct: 64 MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112
Score = 36.3 bits (84), Expect = 0.005
Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
+ + + + + L ++ V+D+ G L GI+T D++ +L +
Sbjct: 1 RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60
Query: 361 IEFCEDGSWIISASMT-FDRFKELLSNQVNF-PV 392
+ +S + + + +L + + PV
Sbjct: 61 GDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPV 94
>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains in the
inosine 5' monophosphate dehydrogenase (IMPDH) protein.
IMPDH is an essential enzyme that catalyzes the first
step unique to GTP synthesis, playing a key role in the
regulation of cell proliferation and differentiation.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain in IMPDH have been
associated with retinitis pigmentosa.
Length = 110
Score = 35.1 bits (82), Expect = 0.013
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 285 IISNRSI-----VNIDITSAIQP-PLFI-PETISTMQLLETFKKNKSELSLVIDEYGELE 337
I++NR + ++ ++ + P L E S + LE ++K E V+D+ G+L+
Sbjct: 40 IVTNRDLRFETDLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLK 99
Query: 338 GIITINDI 345
G+IT+ DI
Sbjct: 100 GLITVKDI 107
>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domains associated with the bacterial CAP_ED (cAMP
receptor protein effector domain) family of
transcription factors and the DUF294 domain. Members of
CAP_ED, include CAP which binds cAMP, FNR (fumarate and
nitrate reductase) which uses an iron-sulfur cluster to
sense oxygen, and CooA a heme containing CO sensor. In
all cases binding of the effector leads to
conformational changes and the ability to activate
transcription. DUF294 is a putative
nucleotidyltransferase with a conserved DxD motif. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
CBS domains usually come in tandem repeats, which
associate to form a so-called Bateman domain or a CBS
pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown.
Length = 111
Score = 34.9 bits (81), Expect = 0.015
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+PPL + + S +++ ++ LV D L GI+T D++ +++
Sbjct: 1 RPPLIVDASTSIRDAARLMREHGADALLVRDGDPRL-GIVTRTDLLDAVL 49
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 36.7 bits (86), Expect = 0.024
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
PE + + LE +++ E V+D+ G L+G+IT+ DI
Sbjct: 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDI 200
>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This
family is involved in biosynthesis of guanosine
nucleotide. Members of this family contain a TIM barrel
structure. In the inosine monophosphate dehydrogenases 2
CBS domains pfam00571 are inserted in the TIM barrel.
This family is a member of the common phosphate binding
site TIM barrel family.
Length = 467
Score = 36.1 bits (84), Expect = 0.040
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 266 KKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-------PPLFIPETISTMQLLET 318
+ IS + T + K L ++ R+ +ID S + + PE I+ + E
Sbjct: 110 RYGISGVPVTEDGKLL-GGLVGIRTSRDIDFLSKVSVVMTMTEDLVTAPEGITLEEANEI 168
Query: 319 FKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASM--- 375
++K E ++D+ GEL G+IT DI + D N+ G ++ A++
Sbjct: 169 LHEHKIEKLPIVDDDGELVGLITRKDIEKAR--DYPNA-----SKDAQGRLLVGAAVGTR 221
Query: 376 --TFDRFKELLSNQVNF 390
+R + L+ V+
Sbjct: 222 EDDLERAEALVEAGVDV 238
>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in the EriC CIC-type chloride channels in
bacteria and archaea. These ion channels are proteins
with a seemingly simple task of allowing the passive
flow of chloride ions across biological membranes.
CIC-type chloride channels come from all kingdoms of
life, have several gene families, and can be gated by
voltage. The members of the CIC-type chloride channel
are double-barreled: two proteins forming homodimers at
a broad interface formed by four helices from each
protein. The two pores are not found at this interface,
but are completely contained within each subunit, as
deduced from the mutational analyses, unlike many other
channels, in which four or five identical or
structurally related subunits jointly form one pore. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Mutations of conserved residues within this domain in
CLC chloride channel family members have been associated
with classic Bartter syndrome, Osteopetrosis, Dent's
disease, idiopathic generalized epilepsy, and myotonia.
Length = 115
Score = 33.5 bits (77), Expect = 0.047
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
PP + T + E ++K +LV+D G + GIIT+ D++ +L
Sbjct: 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRAL 49
>gnl|CDD|111042 pfam02101, Ocular_alb, Ocular albinism type 1 protein.
Length = 407
Score = 34.7 bits (79), Expect = 0.082
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 63 LILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVV 122
L+L NPI F TV +L+ G + E+ + KIRFF +M + L+
Sbjct: 204 LVLVANPILFHKTVTAVASLLKGRKGIYTENERLMGAVIKIRFFKIM------LVLIACW 257
Query: 123 FS-ITFFSLIF----------GELIPKRIAMQYSEKAASIISPLMLFLLKL 162
S I SL+F G L P + A + + I++P FLL L
Sbjct: 258 LSNIINESLLFYLEMQPDIHGGSLKPIQNAAKTTWFIMGILNPAQGFLLSL 308
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 34.8 bits (81), Expect = 0.095
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 300 IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
I P+ + S + +N + V+DE G+L G+++++D+
Sbjct: 75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120
>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domain associated with the NTP (Nucleotidyl
transferase) domain downstream. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown.
Length = 113
Score = 32.1 bits (74), Expect = 0.15
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS 354
L + S + L KN + LV+DE G L G +T DI +L+ +S
Sbjct: 5 LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS 55
>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes IMP dehydrogenase, an enzyme of GMP
biosynthesis. This form contains two CBS domains. This
model describes a rather tightly conserved cluster of
IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 450
Score = 33.9 bits (78), Expect = 0.16
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI-GDISNSYQEEIEFCE 365
PE I + L+ +++ E V+D+ GEL G+IT+ DI+ S E
Sbjct: 158 PEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKD--------E 209
Query: 366 DGSWIISASM-----TFDRFKELLSNQVNFPV 392
+G I+ A++ +R + L+ V+ V
Sbjct: 210 NGRLIVGAAVGTREFDKERAEALVKAGVDVIV 241
>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 111
Score = 31.9 bits (73), Expect = 0.21
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 329 VIDEYGELEGIITINDIIHSLIGDISNSYQEEI 361
V+D G L G++T +D+I +L ++ +
Sbjct: 29 VVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGV 61
>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 112
Score = 31.6 bits (72), Expect = 0.22
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 327 SLVIDEYGELEGIITINDIIHSL 349
SLV+ E GEL G++T +++ ++
Sbjct: 26 SLVVMERGELVGLLTFREVLQAM 48
>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with a PAS domain, a GGDEF
(DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain
downstream. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in signal
transduction. The GGDEF domain has been suggested to be
homologous to the adenylyl cyclase catalytic domain and
is thought to be involved in regulating cell surface
adhesiveness in bacteria. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown.
Length = 111
Score = 31.4 bits (72), Expect = 0.24
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
P L +P S + +++ +V+D+ GEL G+++ D++ +
Sbjct: 64 SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQN 111
>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domain in the magnesium transporter, MgtE. MgtE and its
homologs are found in eubacteria, archaebacteria, and
eukaryota. Members of this family transport Mg2+ or
other divalent cations into the cell via two highly
conserved aspartates. CBS is a small domain originally
identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown.
Length = 109
Score = 31.3 bits (72), Expect = 0.24
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 329 VIDEYGELEGIITINDIIH 347
V+DE G L GIIT++D+I
Sbjct: 89 VVDEEGRLVGIITVDDVID 107
>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction
only].
Length = 117
Score = 31.7 bits (72), Expect = 0.25
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSY 357
+ + S L +N ++ + + G+L GIIT DI+ +L
Sbjct: 9 VITVKPDTSVRDALLLMSENGV-SAVPVVDDGKLVGIITERDILRALAAGGKRLL 62
Score = 27.1 bits (60), Expect = 10.0
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 271 KIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVI 330
K++G + + + + + + + +P + + + LE + L +
Sbjct: 40 KLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPV 99
Query: 331 --DEYGELEGIITINDII 346
D+ G+L GIIT++DI+
Sbjct: 100 VDDDGGKLVGIITLSDIL 117
>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
transduction mechanisms].
Length = 382
Score = 33.3 bits (76), Expect = 0.28
Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 191 ITEEEIYKLFREGFDIGIFNKIE-YNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEK 249
I +++ +L RE E L R +L CA +M+ V ++ D +I+
Sbjct: 221 IDRDDLERLLRE---------TELQALRRRMGELT--CA-DIMSR--DVVTVSTDTSIDH 266
Query: 250 NLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN-----RSIVNIDITSAIQPPL 304
+ + PV + +++G + + L K + R + + + P+
Sbjct: 267 ARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPV 325
Query: 305 FI--PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
P+T ++L+ V+D G+L GI++ D+I +L + S +
Sbjct: 326 VTVRPDT-PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQHLGQA 382
>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 125
Score = 31.5 bits (72), Expect = 0.29
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 263 PVYKKSISKIIGTLNTK---------TLFKKIISN--RSIVNIDITSAIQPPLF-IPETI 310
PV + K++G + F KI + +N + S + + I
Sbjct: 28 PVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDD 87
Query: 311 STMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
S E + + V+D+ G+L GI+T D++
Sbjct: 88 SIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123
Score = 28.8 bits (65), Expect = 3.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 306 IPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLIGD 352
+P T M+ + +N L +V + G+L GIIT DI+ L G
Sbjct: 6 VPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGG 53
>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with either the SpoIVFB domain
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) or the chloride channel
protein EriC. SpoIVFB is one of 4 proteins involved in
endospore formation; the others are SpoIVFA (sporulation
protein, stage IV cell wall formation, F locus,
promoter-proximal A), BofA (bypass-of-forespore A ), and
SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB. EriC
is involved in inorganic ion transport and metabolism.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 114
Score = 31.0 bits (71), Expect = 0.33
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
+ + IPE +LL+ + V+D+ G L GI++++DI
Sbjct: 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDI 45
>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other
proteins. Domain present in all 3 forms of cellular
life. Present in two copies in inosine monophosphate
dehydrogenase, of which one is disordered in the crystal
structure. A number of disease states are associated
with CBS-containing proteins including homocystinuria,
Becker's and Thomsen disease.
Length = 49
Score = 29.4 bits (67), Expect = 0.40
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 328 LVIDEYGELEGIITINDIIHSLI 350
V+DE G L GI+T DII +L
Sbjct: 27 PVVDEEGRLVGIVTRRDIIKALA 49
>gnl|CDD|234096 TIGR03031, cas_csx12, CRISPR-associated protein Cas9/Csx12, subtype
II-B/NMENI. Members of this family of CRISPR-associated
(cas) protein are found, so far, in CRISPR/cas loci in
Wolinella succinogenes DSM 1740, Legionella pneumophila
str. Paris, and Francisella tularensis, where the last
probably is an example of a degenerate CRISPR locus,
having neither repeats nor a functional Cas1. The
characteristic repeat length is 37 base pairs and period
is about 72. One region of this large protein shows
sequence similarity to pfam01844, HNH endonuclease
[Mobile and extrachromosomal element functions, Other].
Length = 802
Score = 32.7 bits (74), Expect = 0.51
Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 24/167 (14%)
Query: 207 GIFNKIEYNLASRAL--KLDDQCAITLMTPRMKVNFINI-DDNIEKNLIKILDSSYNYFP 263
+FN Y L + D I L+ + +I +DN ++ + SS +Y
Sbjct: 91 HLFNNRGYTYVDTDLDEYIKDATEINLLKELLPFKLRSISEDNFIDWFLQKIQSSADYLA 150
Query: 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
Y + KI+ + + K + N +I F+ ++L TF KN+
Sbjct: 151 NYSEEFRKILVSKTEEKKDDKELKNAVKDKYNIKE------FLTGATINDEILGTFDKNE 204
Query: 324 -----------SELSLVIDEYGELEGIITINDI----IHSLIGDISN 355
E+ I + +L+ I +++ + +L+G++SN
Sbjct: 205 VEGHRHRKVYFEEIKSDITKNNQLDSIKKKSNLPSVCLSNLLGNLSN 251
>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 111
Score = 30.4 bits (69), Expect = 0.54
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
I E S + L K + +V D +L+G++T DI+
Sbjct: 6 IDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL 46
>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM:
the eight immunoglobulin (Ig) domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 88
Score = 30.0 bits (67), Expect = 0.62
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 308 ETISTMQLLETFKKNKSELS-LVIDEYGELEGIITI 342
E IST+Q+L T +++ S I+ YGE GII +
Sbjct: 44 EVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 31.7 bits (72), Expect = 0.79
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 295 DITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
++ S + P I +L + ++++ E G + G+I +I H+L+G
Sbjct: 327 EVESLEKLPTVINPDTPMRDVLAARHRTGG--AILLVENGRIVGVIGDQNIYHALLG 381
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 30.9 bits (71), Expect = 1.4
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 55 GSIGALSA-LILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHA 113
G +G L A LILS F+S V G L +F G + + FF +
Sbjct: 86 GWLGVLGAFLILS-----FYSVV-GGWVLAYLFKSLTGSFAGADAAEVGAAFFGFIASPL 139
Query: 114 HEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLL 160
+ ++ +T + G + K I E+A+ I+ PL+ LL
Sbjct: 140 SPLLWHLLFLLLTALIVARG--VKKGI-----ERASKILMPLLFVLL 179
>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing
cAMP-binding and CBS domains [Signal transduction
mechanisms].
Length = 610
Score = 31.2 bits (71), Expect = 1.4
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 300 IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352
P + + S K +V+D+ G L GI+T D+ +I D
Sbjct: 156 TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIAD 208
>gnl|CDD|240011 cd04640, CBS_pair_27, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 126
Score = 29.2 bits (66), Expect = 1.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
P+ IP S + LE K+ L LV+D G+IT D+
Sbjct: 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDL 45
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 30.0 bits (68), Expect = 2.7
Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 30/172 (17%)
Query: 25 RLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLIS 84
R + ++ + IA + + V L K + + ++L I +++ + +
Sbjct: 12 RAVIVSPMAPFG-IAFLAA--VLLAKKGGDKAFFSALGVLLGAISIQPKHSLKYLLLVAV 68
Query: 85 IFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQY 144
I S ++ +LT K + IVVF IFG L K +
Sbjct: 69 II----LLSYVLKNLTDK----------KKTVVPPIVVFLEAAVYAIFGYLQNK--LVTP 112
Query: 145 SEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEI 196
+ SI+ + F+L I SI + N + K L+T EEI
Sbjct: 113 LDFILSIVEASLSFVLYY---------IFNYSIPCLKNGRTKH--LLTNEEI 153
>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with either the SpoIVFB domain
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) or the chloride channel
protein EriC. SpoIVFB is one of 4 proteins involved in
endospore formation; the others are SpoIVFA (sporulation
protein, stage IV cell wall formation, F locus,
promoter-proximal A), BofA (bypass-of-forespore A ), and
SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB. EriC
is involved in inorganic ion transport and metabolism.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 111
Score = 28.3 bits (64), Expect = 2.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 328 LVIDEYGELEGIITINDIIH 347
V+D+ G L GI++ +D++
Sbjct: 91 PVVDDSGRLVGIVSRSDLLR 110
>gnl|CDD|217996 pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced
periplasmic protein. The recent structure of a member of
this family shows that it binds to polyisoprenoid. The
structure consists of an extended, eight-stranded,
antiparallel beta-barrel that resembles the lipocalin
fold.
Length = 161
Score = 28.8 bits (65), Expect = 3.2
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 15/127 (11%)
Query: 262 FPVYKKSISKIIGTLNTKT---LFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLET 318
F V IS++ G N + + V ID+ S E + + +
Sbjct: 13 FTVRHLGISEVRGRFNDFSGTIDPDDPGDSSVEVTIDLASVDTGNDLRDEHLRSADFFDV 72
Query: 319 FKKNKSELSLVIDEY------GELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIIS 372
K + E + G +T++ + + + + D + S
Sbjct: 73 AKYPTATFKSTKVEATGGPGTVTVSGDLTLHGVTKPVTLPV------TLTGLGDTPLVFS 126
Query: 373 ASMTFDR 379
A+ T DR
Sbjct: 127 ATGTIDR 133
>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
associated with the pyridoxal-phosphate (PALP) dependent
enzyme domain upstream. The vitamin B6 complex
comprises pyridoxine, pyridoxal, and pyridoxamine, as
well as the 5'-phosphate esters of pyridoxal (PALP) and
pyridoxamine, the last two being the biologically active
coenzyme derivatives. The members of the PALP family
are principally involved in the biosynthesis of amino
acids and amino acid-derived metabolites, but they are
also found in the biosynthetic pathways of amino sugars
and other amine-containing compounds. CBS is a small
domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Length = 110
Score = 27.9 bits (63), Expect = 4.4
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 271 KIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL-FIPETISTMQLLETFKKNKSELSLV 329
+++G+++ L +I ++ ++ + + PL + +L E + ++V
Sbjct: 34 RVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELSELLDRGNV--AVV 91
Query: 330 IDEYGELEGIITINDII 346
+DE G+ GIIT D++
Sbjct: 92 VDEGGKFVGIITRADLL 108
Score = 27.5 bits (62), Expect = 5.6
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 329 VIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLS 385
V+D+ G + G I +D++ +LI + E + + + ELL
Sbjct: 29 VVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELSELLD 84
>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with the EriC CIC-type chloride
channels in archaea. These ion channels are proteins
with a seemingly simple task of allowing the passive
flow of chloride ions across biological membranes.
CIC-type chloride channels come from all kingdoms of
life, have several gene families, and can be gated by
voltage. The members of the CIC-type chloride channel
are double-barreled: two proteins forming homodimers at
a broad interface formed by four helices from each
protein. The two pores are not found at this interface,
but are completely contained within each subunit, as
deduced from the mutational analyses, unlike many other
channels, in which four or five identical or
structurally related subunits jointly form one pore. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Mutations of conserved residues within this domain in
CLC chloride channel family members have been associated
with classic Bartter syndrome, Osteopetrosis, Dent's
disease, idiopathic generalized epilepsy, and myotonia.
Length = 104
Score = 27.7 bits (62), Expect = 5.1
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 241 INIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI--VNIDITS 298
+ D + + ++++ PV + K +G + + K I N + V I
Sbjct: 6 VKDYDKVYEAKRIMIENDLLSLPVVDYN--KFLGAV-----YLKDIENATYGDVVDYIVR 58
Query: 299 AIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
I ++ T + + E KNK+ V+D+ G+ +GI+T++ I+
Sbjct: 59 GIP---YVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSIL 102
>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 135
Score = 28.2 bits (63), Expect = 5.3
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352
+++ +KN +V+D+ G+ G+IT D+ + D
Sbjct: 15 VVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFED 52
>gnl|CDD|226644 COG4176, ProW, ABC-type proline/glycine betaine transport system,
permease component [Amino acid transport and
metabolism].
Length = 290
Score = 28.7 bits (65), Expect = 6.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 122 VFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFV 167
V + T S++ G IP I S + I+ P+ L L++ M FV
Sbjct: 101 VLTATLISIVIG--IPLGIWAARSPRVYRIVRPI-LDLMQTMPTFV 143
>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 114
Score = 27.5 bits (62), Expect = 6.1
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
P F P+ S + +E K+K V+D+ G L G ++ D + L+ SY
Sbjct: 2 NPVTFTPDM-SVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLES---SY--- 54
Query: 361 IEFCEDGSWIISASMTFDRFKELLS 385
C+ + + MT E+L+
Sbjct: 55 --HCDGVA-TVRDIMT----TEVLT 72
>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains in
association with the metalloprotease peptidase M50. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Length = 114
Score = 27.2 bits (61), Expect = 8.2
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 298 SAIQPPLFIPETISTMQLLETFK----KNKSELSLVIDEYGELEGIITINDIIH 347
+ P + +S L E K + EL V+++ G++ G+IT D++
Sbjct: 61 QVMTPAAKLVTVLSEESLAEVLKLLEEQGLDEL-AVVEDSGQVIGLITEADLLR 113
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 28.3 bits (64), Expect = 8.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 319 FKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSY--QEEIEFCEDGSWIISASM 375
F+ ++ + + ++ G+L +T D+I +IG I + +EF G I S SM
Sbjct: 124 FRVPET-MRVNVE--GKLPPGVTAKDVILYIIGKIGVDGATYKAMEFA--GEAIESLSM 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.390
Gapped
Lambda K H
0.267 0.0870 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,102,688
Number of extensions: 2375332
Number of successful extensions: 2831
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2787
Number of HSP's successfully gapped: 164
Length of query: 447
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 347
Effective length of database: 6,502,202
Effective search space: 2256264094
Effective search space used: 2256264094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.0 bits)