RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2372
(447 letters)
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 160 bits (407), Expect = 1e-47
Identities = 45/168 (26%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Query: 186 KKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDD 245
+D +T+E+I + +EG G+ E+ + +LD++ +LM PR + F++++
Sbjct: 2 HLDDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNL 61
Query: 246 NIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLF 305
++ NL ++ S ++ FPV + ++ ++G ++ K L + I+ +++ ++ F
Sbjct: 62 PLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE---RLELVDLVKNCNF 118
Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353
+P ++S M+LLE F+ S++ V+DEYG+L+G++T+ D++ +L G+
Sbjct: 119 VPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF 166
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Length = 173
Score = 143 bits (363), Expect = 4e-41
Identities = 41/173 (23%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
Query: 188 NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNI 247
++ E ++ F E N+ S L L ++ ++MTPR V+++NIDD+
Sbjct: 1 SNASDESDLPSAMPAV---PAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDA 57
Query: 248 EKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIP 307
++ + +++FPV + S+ +++G K L +I+ + ++ P+ +
Sbjct: 58 ATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE----GRVRRNRLRDPIIVH 113
Query: 308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
E+I ++L++T K+++ +L LV DE+G +EG++T D+ ++ G+ + +
Sbjct: 114 ESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDELP 166
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup
B}
Length = 156
Score = 123 bits (311), Expect = 7e-34
Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 191 ITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKN 250
+ E++ L R+ + +F+ + L D M R ++N + +D+IE+
Sbjct: 3 ASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERI 62
Query: 251 LIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETI 310
++D++++ FPV + +++G L+ K L K + + + S ++P +F+PE
Sbjct: 63 TAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPE---QFHLKSILRPAVFVPEGK 119
Query: 311 STMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
S LL+ F++ ++ +++VIDEYG G++T DII
Sbjct: 120 SLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI,
MCSG, STR genomics, midwest center for structural
genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Length = 130
Score = 120 bits (303), Expect = 5e-33
Identities = 31/123 (25%), Positives = 66/123 (53%)
Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
M PR ++ I+I+D+ + + ++ S + +Y+ S+ I L + ++ + +
Sbjct: 8 MVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF 67
Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
+ A F+PE L F++NK ++ LV+DEYG+++G++T+ DI+ ++G
Sbjct: 68 TKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 127
Query: 352 DIS 354
D +
Sbjct: 128 DFT 130
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 118 bits (299), Expect = 3e-32
Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYK 266
G+ ++ E L + +++ +M PR + I D+ EK L + + +PV +
Sbjct: 4 GLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR 63
Query: 267 KSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSEL 326
K+ I+G ++ + L+ + I+ I++ ++ ++I E ++ + LE +K K +L
Sbjct: 64 KNKDDILGFVHIRDLYNQKINEN---KIELEEILRDIIYISENLTIDKALERIRKEKLQL 120
Query: 327 SLVIDEYGELEGIITINDIIHSLIGDI 353
++V+DEYG G++TI DI+ ++G+I
Sbjct: 121 AIVVDEYGGTSGVVTIEDILEEIVGEI 147
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP,
structural genomics, PSI-2, protein S initiative; HET:
MSE AMP; 2.00A {Bordetella parapertussis}
Length = 129
Score = 111 bits (280), Expect = 9e-30
Identities = 39/122 (31%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
M PR +++ ++I + + L I++++++ FPVY+ IIG L K L + ++
Sbjct: 11 MVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--- 67
Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
+DI S ++P +FIPE LL F+ +++ L++VIDE+G + G++T+ D++ ++G
Sbjct: 68 -ALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG 126
Query: 352 DI 353
DI
Sbjct: 127 DI 128
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
AMP; 1.53A {Pseudomonas syringae}
Length = 136
Score = 111 bits (281), Expect = 9e-30
Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
M PR ++ I + L ++D++++ +PV +S ++G L K L I+
Sbjct: 9 MVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG- 67
Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
+ D+ ++P F+PE+ LL F+ N + +++VIDEYG + G++TI D++ ++G
Sbjct: 68 DSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG 127
Query: 352 DISNSYQEE 360
DI + + E
Sbjct: 128 DIEDEHDVE 136
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus
RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio
parahaemolyticus}
Length = 130
Score = 111 bits (280), Expect = 1e-29
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
D +MTPR V ++ I + L K D+ ++ VY + IIG ++ LF
Sbjct: 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELF 62
Query: 283 KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
K S + + ++P + + ++ + ++ +L+LV+DEYG + G++T+
Sbjct: 63 KMQQSGSG--QKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTL 120
Query: 343 NDIIHSLIGD 352
DI L+G+
Sbjct: 121 EDIFEHLVGE 130
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG; 2.20A {Oenococcus oeni}
Length = 153
Score = 109 bits (276), Expect = 7e-29
Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 210 NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYK-KS 268
++ + N RA +++D+ A +M R ++ +++D+ I L+ L+ Y+ FPV
Sbjct: 4 DEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND 63
Query: 269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSL 328
KIIG + ++ + I++ ++ + +PE + ++E ++ +++
Sbjct: 64 KDKIIGYAYNYDIVRQARIDD---KAKISTIMRDIVSVPENMKVPDVMEEMSAHRVPMAI 120
Query: 329 VIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
VIDEYG GIIT D+ L G++ + +E
Sbjct: 121 VIDEYGGTSGIITDKDVYEELFGNLRDEQDDE 152
>3ded_A Probable hemolysin; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG, membrane; HET: MSE; 2.14A {Chromobacterium
violaceum} SCOP: d.145.1.4
Length = 113
Score = 107 bits (269), Expect = 2e-28
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 349 LIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTF 408
L + ++EI EDGSW++ ++ DRF+E + P + N HTLAG ++
Sbjct: 17 LYFQGHDGEEDEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQ 76
Query: 409 LGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT 442
LG +P +++ F W EV+DM+ +++++LV
Sbjct: 77 LGRVPSVTDRFEWNGFSFEVVDMDRTRVDKILVQ 110
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: AMP; 2.00A {Salmonella
typhimurium}
Length = 127
Score = 105 bits (266), Expect = 8e-28
Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
M PR ++ + + +++ L I++S+++ FPV + I G L K L + S+
Sbjct: 9 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE- 67
Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
+ ++ + +PE+ ++L+ F+ + +++VIDE+G + G++TI DI+ ++G
Sbjct: 68 -AFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 126
Query: 352 D 352
+
Sbjct: 127 E 127
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur
genomics, PSI-2, protein structure initiative, midwest
CENT structural genomics; HET: MLY; 1.80A {Xylella
fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Length = 94
Score = 101 bits (254), Expect = 2e-26
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
EDGS++I ++ + +E+L P NYHTLAG +++ G IP + E F W
Sbjct: 16 EDGSFLIDGTLPIEELREVLG--AELPDGEENNYHTLAGMCISYFGRIPHVGEYFDWAGW 73
Query: 425 KIEVIDMNNNKIERLLVTILN 445
+IE++D++ +I+ LL+ LN
Sbjct: 74 RIEIVDLDGARIDXLLLQRLN 94
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated
domain, CBS DOM protein, structural genomics, PSI-2
structure initiative; 2.15A {Chlorobium tepidum tls}
SCOP: d.145.1.4
Length = 86
Score = 98.7 bits (247), Expect = 1e-25
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
EDGSW++ + K+ L P + YHTL+G +M LG +P+ + W+N
Sbjct: 7 EDGSWLLDGLIAVPELKDTL-GLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENW 65
Query: 425 KIEVIDMNNNKIERLLVTILN 445
++EVIDM++ +I+++L T ++
Sbjct: 66 RLEVIDMDSKRIDKVLATKID 86
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP:
d.145.1.4
Length = 90
Score = 93.7 bits (234), Expect = 8e-24
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
+ E DG+W++ ++ + LL + + + Y TL G+++ G+IP E
Sbjct: 6 KVVAEQQADGTWLMDGWISIRKASNLLE--HDLVDE-AERYSTLGGYLLWQFGYIPAAGE 62
Query: 418 NFIWKNIKIEVIDMNNNKIERLLVT 442
+ E++ +N + I ++ V
Sbjct: 63 QITVDGLIFEIVSVNKHNIGKVRVH 87
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural
genomics, PSI-2, protein structure initiative; 2.55A
{Neisseria meningitidis} SCOP: d.145.1.4
Length = 92
Score = 93.3 bits (233), Expect = 1e-23
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
D S + ++ + L+ + + ++HT+AG +M L IP + + +
Sbjct: 15 PDESLTVEGALEYVELAPQLN--LPQQEE-DADFHTVAGLIMEELQTIPDVGDFADFHGW 71
Query: 425 KIEVIDMNNNKIERLLVTIL 444
+ EV++ +IER+ +T L
Sbjct: 72 RFEVVEKEGQRIERVKITKL 91
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter
associated D CORC_HLYC, structural genomics, PSI-2;
1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Length = 93
Score = 92.7 bits (231), Expect = 3e-23
Identities = 12/80 (15%), Positives = 32/80 (40%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
DGS++ + + L N ++ TL+G + +P + + +++
Sbjct: 13 GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPF 72
Query: 425 KIEVIDMNNNKIERLLVTIL 444
+ +V M+ +I + +
Sbjct: 73 RFQVTQMDKRRIIEIKIFPF 92
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics; HET: MLY MSE; 1.80A {Haemophilus
ducreyi} SCOP: d.145.1.4
Length = 86
Score = 88.7 bits (221), Expect = 6e-22
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
+ SW+I + + L N FP NY T+ GF+M L IP ++ ++
Sbjct: 7 NEDSWLIDGATPLEDVMRAL-NIHTFPR--DENYETIGGFMMYMLRXIPXXTDFVLYDXY 63
Query: 425 KIEVIDMNNNKIERLLVTILND 446
E+ID N +I++L+V+ D
Sbjct: 64 XFEIIDTENFRIDQLMVSFRXD 85
>3llb_A Uncharacterized protein; protein PA3983, unknown function,
structural genomics, PSI2, MCSG, protein structure
initiative; 1.80A {Pseudomonas aeruginosa}
Length = 83
Score = 75.3 bits (186), Expect = 3e-17
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
G +I+ A D F + F + T+ G VM+ GH+PK +E
Sbjct: 7 PSGDFIVKALTPVDAFNDFFG--SEFS---DEEFDTVGGLVMSAFGHLPKRNEVVELGEF 61
Query: 425 KIEVIDMNNNKIERLLVTILND 446
+ V++ ++ ++ L ++ L +
Sbjct: 62 RFRVLNADSRRVHLLRLSPLQN 83
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2,
structural genomics, Pro structure initiative; 1.70A
{Neisseria meningitidis} SCOP: d.145.1.4
Length = 91
Score = 72.2 bits (178), Expect = 4e-16
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
+ I W I A+ + + S T+ G V+ LGH+P E
Sbjct: 10 DNIHAVSSERWRIHAATEIEDINTFFG--TEYS---SEEADTIGGLVIQELGHLPVRGEK 64
Query: 419 FIWKNIKIEVIDMNNNKIERLLVTIL 444
+ ++ V +N ++ L+ T +
Sbjct: 65 VLIGGLQFTVARADNRRLHTLMATRV 90
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus
influenzae RD KW20, structural genomics, PSI-2; HET:
MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A*
Length = 81
Score = 71.8 bits (177), Expect = 4e-16
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENF 419
DGS II S ++ + + + T G ++ L IP
Sbjct: 2 NAIQQSDGSMIIDGSANLRDLNKMFN--WELD---TEDARTFNGLILEHLEEIPDEGTIC 56
Query: 420 IWKNIKIEVIDMNNNKIERLLVTIL 444
+ I ++++ +N I++ V L
Sbjct: 57 EIDGLLITILEVGDNMIKQAKVVKL 81
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative,
midwest center for structural genomics, MCSG; 1.20A
{Enterococcus faecalis} SCOP: d.145.1.4
Length = 93
Score = 69.9 bits (172), Expect = 3e-15
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE- 417
D +++ M D F E+ + + + T+AG+++T LG IP E
Sbjct: 8 NLYTQVADNEYLVQGRMLIDEFNEVF--ETDLH---MSDVDTMAGYLITALGTIPDEGEK 62
Query: 418 -NFIWKNIKIEVIDMNNNKIERLLVTILNDK 447
+F NIK+ +M ++ L V +++
Sbjct: 63 PSFEVGNIKLTAEEMEGTRLLVLRVHFYDEE 93
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics,
CORC_HLYC, PFAM03471, putative transpor protein; 1.80A
{Corynebacterium glutamicum} SCOP: d.145.1.4
Length = 101
Score = 65.9 bits (161), Expect = 9e-14
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 22/104 (21%)
Query: 358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
E+I W+I D + + P +Y T++G + + K +
Sbjct: 3 AEDITETSPDKWLIDGDTPLDEVERAIG--YELP---EGDYETISGLLFDHANALLKTGD 57
Query: 418 NF-----------------IWKNIKIEVIDMNNNKIERLLVTIL 444
+ ++I V+++ N +L + +L
Sbjct: 58 VIEIPLDFEPEDYLNNTSPTQRILRITVLEVERNVPVKLALALL 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 1e-12
Identities = 65/454 (14%), Positives = 134/454 (29%), Gaps = 158/454 (34%)
Query: 88 GAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEK 147
G++ + + + + + +F +
Sbjct: 159 LGSGKTWVAL---------DVCLSYKVQCKMDFKIFWLN-----LKN----------CNS 194
Query: 148 AASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIG 207
+++ L L ++ + S+ L I +I+ + L+ + Y+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YE--------- 244
Query: 208 IFNKIEYNLASRALK-LDD------------QCAITLMTPRMK--VNFINI--------- 243
L L + C I L+T R K +F++
Sbjct: 245 -----------NCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLD 292
Query: 244 -------DDNIEKNLIKILDSSYNYFPVYKKSIS----KIIGTL-----NTKTLFKKIIS 287
D ++ L+K LD P + + II T +K +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 288 NRSIVNIDITSAIQPP---------LFI-PETIS-TMQLLETF--KKNKSELSLVIDE-- 332
++ I+ + + P L + P + LL KS++ +V+++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 333 -YGEL-----EGIITINDI-------------IH-SLIGDISNSYQEEIEFC-------- 364
Y + E I+I I +H S++ + Y F
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPPY 468
Query: 365 EDGSW-------IISASMT--FDRFKELLSNQVNF-PVKISRNYHTL---AGFVMTFLGH 411
D + + + F+ + + F KI R+ T +G ++ L
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKI-RHDSTAWNASGSILNTLQQ 526
Query: 412 IPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445
+ K + +I N+ K ERL+ IL+
Sbjct: 527 L-KFYKPYICD---------NDPKYERLVNAILD 550
Score = 49.1 bits (116), Expect = 3e-06
Identities = 34/288 (11%), Positives = 89/288 (30%), Gaps = 65/288 (22%)
Query: 179 DIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTP---- 234
+ +Y+ D++ F + FD ++ ++ L ++ +M+
Sbjct: 10 ETGEHQYQYKDIL--SVFEDAFVDNFD---CKDVQ-DMPKSILS-KEEIDHIIMSKDAVS 62
Query: 235 RMKVNFINIDDN----IEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI-ISNR 289
F + ++K + ++L +Y + +S I ++ ++ I R
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL------MSPIKTEQRQPSMMTRMYIEQR 116
Query: 290 SIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH-- 347
+ D +F +S +Q ++ EL + + +I
Sbjct: 117 DRLYND------NQVFAKYNVSRLQPYLKLRQALLELR-------PAKNV-----LIDGV 158
Query: 348 ------SLIGDISNSYQEEIEFCEDGSWIISASMTF---DRFKELLSNQVNFPVKISRNY 398
+ D+ SY+ + + W+ + + +L +I N+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 399 HTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
+ + H I ++ + + LL +L +
Sbjct: 214 TSRS-------DHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLN 252
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein
structure initiative, midwest center for structural
genomics, membrane; 1.50A {Streptococcus mutans UA159}
SCOP: d.145.1.4
Length = 87
Score = 58.5 bits (142), Expect = 3e-11
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE-- 417
+ D ++I+ +MT + F E + + S N T+AGF +T +G IP E
Sbjct: 1 QSREIADNTYIVLGTMTLNDFNEYF--ETDLE---SDNVDTIAGFYLTGVGTIPSQEEKE 55
Query: 418 ----NFIWKNIKIEVIDMNNNKIERLLVTI 443
K++++ + + ++ +L + +
Sbjct: 56 HFEVESNGKHLELINDKVKDGRVTKLKILV 85
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 47.4 bits (113), Expect = 2e-06
Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+T + + + L ++ N V + G +++
Sbjct: 18 WVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRG----------VVNKED 64
Query: 291 IVNIDITSAIQ-----PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
++++D+ S++ P F+ E + L F +++ V+DE L+G ++++D
Sbjct: 65 LLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124
Query: 346 IHSLI 350
+ +LI
Sbjct: 125 LEALI 129
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 45.9 bits (109), Expect = 3e-06
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
M KV + + +N+E L+ + + Y PV S ++ G + T + I
Sbjct: 19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLER 77
Query: 291 IVNIDITSA------IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
I + + + M+ N V ++ EGI T
Sbjct: 78 IEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRV 135
Query: 345 IIHSL 349
++ L
Sbjct: 136 VLKEL 140
Score = 32.0 bits (73), Expect = 0.21
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
+ + L K V+D L G+I N I++S+ G
Sbjct: 28 HVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 7e-06
Identities = 49/279 (17%), Positives = 89/279 (31%), Gaps = 92/279 (32%)
Query: 9 PKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRV------RLKKLIEKGSIGALSA 62
P L +H IR + IF + ++++ + G LS
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS- 1727
Query: 63 LILSENPIHFFSTVQIGITLIS--IF-----NGAFGESSLVA--SLTPKIRFFSLMRDHA 113
++ T Q +TL+ F G + A SL
Sbjct: 1728 --ATQF------T-QPALTLMEKAAFEDLKSKGLIPADATFAGHSLG------------- 1765
Query: 114 HEIS-LVIV--VFSI-TFFSLIF--GELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFV 167
E + L + V SI + ++F G + ++A+ E S M+ + P
Sbjct: 1766 -EYAALASLADVMSIESLVEVVFYRGMTM--QVAVPRDELGRSNYG--MIAI----NPGR 1816
Query: 168 KILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLAS--------- 218
+ S E++ + E + K R G+ + I N YN+ +
Sbjct: 1817 VAASFSQEALQYV------------VERVGK--RTGWLVEIVN---YNVENQQYVAAGDL 1859
Query: 219 RALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS 257
RAL ++ +K+ ID +I++ S
Sbjct: 1860 RAL----DTVTNVLN-FIKLQ--KID------IIELQKS 1885
Score = 43.9 bits (103), Expect = 9e-05
Identities = 73/510 (14%), Positives = 143/510 (28%), Gaps = 206/510 (40%)
Query: 50 KLIEKGSIGALSAL-----------ILSENPIHFFSTVQIGITLISIFNGAFGESSLVAS 98
L+E +G + L N IH +L A
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH----------------------ALAAK 107
Query: 99 L-----TPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIIS 153
L T ++ L++++ + F S +F R E A +++
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF------RAV---GEGNAQLVA 158
Query: 154 PLMLF------------LLKLM---GPFVKILTISTESILDIFNIKYKKNDLI-TEEEIY 197
+F L L V L + L ++LI T +
Sbjct: 159 ---IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL---------SELIRTTLDAE 206
Query: 198 KLFREGFDIG--IFNK-----IEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKN 250
K+F +G +I + N +Y L S I+ P
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDY-LLS--------IPISC--P---------------- 239
Query: 251 LIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL------ 304
LI ++ + +Y +K++G L + + + + +A+
Sbjct: 240 LIGVIQLA-HYV-----VTAKLLG-FTPGELR-SYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 305 FIPETISTMQLL--------ETFKKNKSELSLVID--EYGE----------------LEG 338
F + +L E + S++ D E E ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 339 IIT-INDI------IH-SLIGDISNSYQEEIEFCEDGSWIIS-----------------A 373
+ N + SL+ N + + ++S A
Sbjct: 352 YVNKTNSHLPAGKQVEISLV----NGAK---------NLVVSGPPQSLYGLNLTLRKAKA 398
Query: 374 SMTFDRFKELLSN-----QVNF-PVKISRNYHT--LAGFVMTFLGHIPKISENFIWKNIK 425
D+ + S F P ++ +H+ L + K + +F K+I+
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 426 IEVID---------MNNNKIERLLVTILND 446
I V D ++ + ER++ I+
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 35.0 bits (80), Expect = 0.051
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 33 FSMSEIAI-----ITSKRVRLKKLIEKGSI-GALSALILSENPIHFFSTVQIGITLISIF 86
F+ +I I +R + GSI + I+ P+ + +T Q T I F
Sbjct: 450 FNAKDIQIPVYDTFDGSDLR----VLSGSISERIVDCIIRL-PVKWETTTQFKATHILDF 504
Query: 87 NGAFGESSLVASLTPKIR 104
G G +S + LT + +
Sbjct: 505 -GP-GGASGLGVLTHRNK 520
Score = 33.1 bits (75), Expect = 0.24
Identities = 18/137 (13%), Positives = 47/137 (34%), Gaps = 50/137 (36%)
Query: 17 VLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTV 76
V+S+ + ++F G+ ++ + + +G + +++ NP V
Sbjct: 1776 VMSIESLVEVVFYRGMT--------------MQVAVPRDELGRSNYGMIAINP----GRV 1817
Query: 77 QIGIT-----------------LISI--FN--G-----AFGESSLVASLTPKIRFFSLMR 110
+ L+ I +N A G+ + ++T + F L +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA-GDLRALDTVTNVLNFIKLQK 1876
Query: 111 DHAHEISLVIVVFSITF 127
I ++ + S++
Sbjct: 1877 -----IDIIELQKSLSL 1888
Score = 28.1 bits (62), Expect = 7.2
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 35/99 (35%)
Query: 360 EIEFCEDGSWIISASMTF------DRFKELLSNQVNFPVKISRNY------HTLAGFVMT 407
+E ++ + F ++F ++L P + + T A V
Sbjct: 15 SLEH----VLLVPTASFFIASQLQEQFNKILPE----P---TEGFAADDEPTTPAELVGK 63
Query: 408 FLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
FLG++ + E + +++L L +
Sbjct: 64 FLGYVSSLVE------------PSKVGQFDQVLNLCLTE 90
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 44.7 bits (106), Expect = 8e-06
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
LM KV + I + +E L+ ++ S Y+ PV K+ G + + + I
Sbjct: 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLI-STAMILDGILGLE 77
Query: 291 IVNIDITSAIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
+ + ++ + S + LE + ++E G EGI+T
Sbjct: 78 RIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHP--FICAVNEDGYFEGILTRR 135
Query: 344 DIIHSL 349
I+ L
Sbjct: 136 AILKLL 141
Score = 29.7 bits (67), Expect = 1.1
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQE 359
+ L K+ V+D +L G+I+ I+ ++G ++
Sbjct: 29 HVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFER 83
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 44.3 bits (105), Expect = 1e-05
Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+ P KV + + ++ L+ + + Y+ PV S K+ G + + T+ I
Sbjct: 16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLI-SMTMMMDAILGLE 73
Query: 291 IVNIDITSAIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
+ + ++ + S M+ + + V ++ G GI T
Sbjct: 74 RIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHP--FVCVENDDGYFAGIFTRR 131
Query: 344 DIIHSLIGDISNSYQEE 360
+++ L +
Sbjct: 132 EVLKQLNKQLHRPNGGR 148
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 43.6 bits (103), Expect = 6e-05
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 285 IISNRSIVNIDITSAI-----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339
IIS + I+ + + + E + + + + +V+D G+ GI
Sbjct: 47 IISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGI 106
Query: 340 ITINDIIHSLI 350
+T+ DII
Sbjct: 107 LTVGDIIRRYF 117
Score = 30.5 bits (69), Expect = 0.88
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
++ ++ K E VI G+L G+I D++ L+
Sbjct: 234 ATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 278
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 43.6 bits (103), Expect = 6e-05
Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEK 249
L+T ++ Y++++ + MTP + +
Sbjct: 64 LLTTRDLLSTVESYCKDSCSQGDLYHISTTPII-------DYMTP--NPVTVYNTSDEFT 114
Query: 250 NLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNI-DITSAIQPPLFIPE 308
+ ++ ++ PV + K +G + + I + S I +
Sbjct: 115 AINIMVTRNFGSLPVVDIND-KPVGIVTEREFLLLYKDLDEIFPVKVFMS--TKVQTIYK 171
Query: 309 TISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIE 362
+ Q ++ + VID+ ++ GI+T+ + I L + +
Sbjct: 172 EVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFY 225
Score = 33.2 bits (76), Expect = 0.14
Identities = 20/137 (14%), Positives = 52/137 (37%), Gaps = 10/137 (7%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
M+ +++ I + +++ + +L + PV +K++G + K++
Sbjct: 161 FMSTKVQT--IYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVD 217
Query: 291 IVNIDITSAIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
++ D + I E S + + L++++ + GIIT
Sbjct: 218 KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITER 277
Query: 344 DIIHSLIGDISNSYQEE 360
D++ +L + +E
Sbjct: 278 DLLIALHHILVMEKFKE 294
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 40.8 bits (96), Expect = 2e-04
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 230 TLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLN----TKTLFKKI 285
T +TP + + N + + + +Y PV + +GT+ +
Sbjct: 19 TFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHD 77
Query: 286 ISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
+S + + DI + + + ++L V+D G +GIIT
Sbjct: 78 LSQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKS 135
Query: 345 II---HSLIGDISNSYQ 358
I+ ++L+ D S Y+
Sbjct: 136 ILKAVNALLHDFSKEYE 152
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 285 IISNRSI---VNIDITSAIQPPLF-IPETISTMQLLETFKKNKSELSLVIDEYGELEGII 340
II+ + I + + + +PE+I + L+ +N+ + V+DE G+L G+I
Sbjct: 138 IITKKDIAAREGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197
Query: 341 TINDI 345
T++D+
Sbjct: 198 TMSDL 202
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSA 299
+ + ++ S PV + +G + + + V +
Sbjct: 17 VFTLGGSTADAARRLAASGCACAPVLDGE--RYLGMV-HLSRLLEGRKGWPTVKEKLGEE 73
Query: 300 -IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
++ L + K + + DE G EG+++ I+ L
Sbjct: 74 LLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 38.1 bits (88), Expect = 0.002
Identities = 16/146 (10%), Positives = 46/146 (31%), Gaps = 15/146 (10%)
Query: 216 LASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSIS-KIIG 274
+ R + M + + D +E+ + + + +P+ + + S ++G
Sbjct: 3 ILGRNIGSHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVG 60
Query: 275 TLNTKTLFKKIISNRSI-----------VNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
+ L + + + + L + + Q FK
Sbjct: 61 IVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLN 120
Query: 324 SELSLVIDEYGELEGIITINDIIHSL 349
+ SL + G G ++ ++ ++
Sbjct: 121 LQ-SLFVTSRGRAVGCVSWVEMKKAI 145
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 37.2 bits (87), Expect = 0.003
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
L + ++ + + +V+DE ++GI++++DI+ +L+
Sbjct: 102 GVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALV 150
Score = 28.4 bits (64), Expect = 2.6
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 300 IQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLIGDISNSYQ 358
+ T L F +++ S L V+DE G + I + D+I+ N+
Sbjct: 28 YANIAMVRTTTPVYVALGIFVQHRVSAL-PVVDEKGRVVDIYSKFDVINLAAEKTYNNLD 86
Query: 359 EEIE 362
+
Sbjct: 87 VSVT 90
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 38.2 bits (89), Expect = 0.004
Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 11/191 (5%)
Query: 190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEK 249
+IT +I G +N I L ++ +M V + + +I++
Sbjct: 51 IITSMDIVDFMGGGSK---YNLIREKHERNFLAAINEPVREIMEE--NVITLKENADIDE 105
Query: 250 NLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNI--DITSAIQPPLFIP 307
+ L + P+ +++I + + + + ++ + D + + +
Sbjct: 106 AIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKIDENEVIDDYIT--RDVIVAT 162
Query: 308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDG 367
+ T +N V+ E G L GIIT D I L D + ++ + E
Sbjct: 163 PGERLKDVARTMVRNGFRRLPVVSE-GRLVGIITSTDFIKLLGSDWAFNHMQTGNVREIT 221
Query: 368 SWIISASMTFD 378
+ + M D
Sbjct: 222 NVRMEEIMKRD 232
Score = 37.4 bits (87), Expect = 0.006
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
K+ + I K L+ + ++ Y PV +K++G + + + +
Sbjct: 9 AQNK--KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK 66
Query: 291 IVNIDITSAIQ---------------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGE 335
I + + E + +ETF + ++++ +
Sbjct: 67 YNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQ 126
Query: 336 LEGIITINDIIHSLIGDISNSYQ 358
L +IT D+I +L+ I +
Sbjct: 127 LISLITERDVIRALLDKIDENEV 149
Score = 32.4 bits (74), Expect = 0.25
Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+T V + ++ ++ + + PV + +++G + + K + S+ +
Sbjct: 153 YITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG--RLVGIITSTDFIKLLGSDWA 208
Query: 291 IVNIDITSAIQ------------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEG 338
++ + + + E ++ E N V+DE ++G
Sbjct: 209 FNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKG 268
Query: 339 IITINDIIHSL 349
IIT D++
Sbjct: 269 IITEKDVLKYF 279
Score = 27.8 bits (62), Expect = 6.7
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 295 DITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDI 353
+ + + + T + + L T +NK V++ ++ GIIT DI+ + G
Sbjct: 8 IAQN--KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65
Query: 354 SNSYQEEIE 362
+ E
Sbjct: 66 KYNLIREKH 74
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 36.2 bits (84), Expect = 0.008
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 285 IISNRSIVNIDITSAIQP------------PLFIPETISTMQLLETFKKNKSELSLVIDE 332
++S RSI+ I +P + + +N E V+D+
Sbjct: 55 LLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD 114
Query: 333 YGELEGIITINDIIHSL 349
G + GI+T+ D+ L
Sbjct: 115 PGRVVGIVTLTDLSRYL 131
Score = 28.9 bits (65), Expect = 2.4
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 300 IQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLI 350
+ + ++ +N L +V D+ G G+++ II I
Sbjct: 16 NSNFKTVNWNTTVFDAVKIMNENHLYGL-VVKDDNGNDVGLLSERSIIKRFI 66
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 36.9 bits (86), Expect = 0.012
Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 252 IKIL-DSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL-FIPET 309
I ++ + PV + ++G + +TL +I+S + A+ + + E+
Sbjct: 408 IALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRVIRLNES 467
Query: 310 ISTMQLLETFKKNKSELSLVIDE----YGELEGIITINDIIHSL 349
+L + + S L++ + EL+ + T D+ +
Sbjct: 468 EILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFI 509
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 36.5 bits (84), Expect = 0.015
Identities = 25/222 (11%), Positives = 67/222 (30%), Gaps = 32/222 (14%)
Query: 168 KILTI-STESILDIFNIKYKKN---------------DLITEEEIYKLFREGFDIGIFNK 211
K++ ++ + F ++T + + + +
Sbjct: 46 KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQI 105
Query: 212 IEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISK 271
E K++ + L + I+ + ++ + ++ + + PV
Sbjct: 106 YELEE----HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN 161
Query: 272 IIGTLNTKTLFKKIISN-----------RSIVNIDITSAIQPPLFIPETISTMQLLETFK 320
+ L K + K + +S+ + I + + T L F
Sbjct: 162 TLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGT-YANIAMVRTTTPVYVALGIFV 220
Query: 321 KNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIE 362
+++ V+DE G + I + D+I+ N+ +
Sbjct: 221 QHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVT 262
Score = 35.7 bits (82), Expect = 0.023
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
L + ++ + + +V+DE+ ++GI++++DI+ +L+
Sbjct: 274 GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 322
Score = 29.9 bits (67), Expect = 1.5
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 295 DITSAIQPPLFIPETISTMQLLETFKKNKSELSLVID-EYGELEGIITINDIIHSLIGDI 353
D+ + ++ + N + + D + G++TI D I+ L
Sbjct: 39 DLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYY 98
Query: 354 SNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVK 393
++ + E E D FK L+ N +
Sbjct: 99 KSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLF 138
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 36.7 bits (86), Expect = 0.015
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
P IS + E +++ E ++ + +L G+ITI DI
Sbjct: 171 PPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDI 209
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 36.7 bits (86), Expect = 0.016
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
P + + + +K K E ++D G L+G+ITI DI
Sbjct: 190 PVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 36.4 bits (84), Expect = 0.016
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352
T + + K ++ V+DE +LEGI+++ DI++ +I D
Sbjct: 271 RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD 316
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 36.3 bits (85), Expect = 0.017
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
+++ E ++D G L G+ITI DI
Sbjct: 167 AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDI 205
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 36.3 bits (85), Expect = 0.017
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
E + ++ E K + E LV+++ +L+G+IT D
Sbjct: 165 KEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDF 203
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 34.5 bits (80), Expect = 0.022
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 285 IISNRSIV-----NIDITSAIQ-----PPLFIPETISTMQLLETFKKNKSELSLVIDEYG 334
II+ R IV + + + + I E L ++ V+D+ G
Sbjct: 49 IITERDIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKG 108
Query: 335 ELEGIITINDIIHSLI 350
L+GII+I DI ++
Sbjct: 109 NLKGIISIRDITRAID 124
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ + +++ +K + V+D+ G L G++T++DI+ ++
Sbjct: 91 EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140
Score = 27.1 bits (61), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 329 VIDEYGELEGIITINDIIHSLIGDI 353
+IDE G L + D++ + G I
Sbjct: 47 IIDENGYLINVYEAYDVLGLIKGGI 71
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 35.6 bits (83), Expect = 0.029
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
P ++ + E +++K ++++ EL II D+
Sbjct: 189 PAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 35.6 bits (83), Expect = 0.030
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
+ + + + K +ID+ L I+ D
Sbjct: 177 HQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDY 215
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 34.9 bits (80), Expect = 0.037
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ + +++ +K + V+D+ G L G++T++DI+ ++
Sbjct: 270 EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 33.3 bits (77), Expect = 0.043
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 17/77 (22%)
Query: 285 IISNRSIVNIDITSAIQ------------PPLFIPETISTMQLLETFKKNKSELSLVIDE 332
II++ DI A+ + E + K V+D+
Sbjct: 47 IITSW-----DIAKALAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD 101
Query: 333 YGELEGIITINDIIHSL 349
Y + GI+T DI
Sbjct: 102 YRRVVGIVTSEDISRLF 118
Score = 28.2 bits (64), Expect = 2.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 300 IQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDII 346
+PP+ IS M+ + K+ + L ++DE+G+L GIIT DI
Sbjct: 8 SKPPITAHSNISIMEAAKILIKHNINHL-PIVDEHGKLVGIITSWDIA 54
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 34.5 bits (80), Expect = 0.059
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 309 TISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
T + + T + + LE +
Sbjct: 89 TYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNA 125
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 33.5 bits (77), Expect = 0.068
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
PL + ++ + + K V+D G+L GI+T +++ + +
Sbjct: 107 SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL 155
Score = 32.4 bits (74), Expect = 0.18
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 295 DITSAIQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLIGDI 353
D + Q + + S LE + K + L VID+ L G+++ D++
Sbjct: 8 DFMTPRQNLHVVKPSTSVDDALELLVEKKVTGL-PVIDDNWTLVGVVSDYDLLALDSISG 66
Query: 354 SNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVK 393
+ + D +W TF+ ++L+S V
Sbjct: 67 RSQNDTNLFPDVDSTWK-----TFNELQKLISKTYGKVVG 101
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 33.0 bits (76), Expect = 0.070
Identities = 9/59 (15%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
+ ++L +++ + ++I+E G++ GI T++D++ + + + E
Sbjct: 81 NLITANVNTPLGEVLRKMAEHRIK-HILIEEEGKIVGIFTLSDLLEASRRRLETAISAE 138
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 302 PPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLI 350
L + + S + + L +VI++ G + G T +DII +I
Sbjct: 16 KLLGVKPSTSVQEASRLMMEFDVGSL-VVINDDGNVVGFFTKSDIIRRVI 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.074
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 36/64 (56%)
Query: 248 EKNLIKILDSSYN-YFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFI 306
EK +K L +S Y D SA P L I
Sbjct: 18 EKQALKKLQASLKLYAD-------------------------------D--SA--PALAI 42
Query: 307 PETI 310
T+
Sbjct: 43 KATM 46
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 32.6 bits (75), Expect = 0.092
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 295 DITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS 354
I ++ P+ + +T E +++ +V+++ GEL G+++I D+ +
Sbjct: 75 PIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER-AILL 130
Query: 355 NSYQEEIE 362
E+
Sbjct: 131 ELATAEVP 138
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 32.1 bits (74), Expect = 0.098
Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+M V+ I+I ++E L ++++ V K+ +G + T + + I
Sbjct: 6 VMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG--VRVGIVTTWDVLEAIAEGDD 61
Query: 291 IVNI---DITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
+ + ++ + I + + E KN L+++E E+ G+I+ DI+
Sbjct: 62 LAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVW-RLLVEEDDEIIGVISATDILR 118
Query: 348 SLIG 351
+ +
Sbjct: 119 AKMA 122
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 31.9 bits (73), Expect = 0.19
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 329 VIDEYGELEGIITINDIIHSL 349
V+DE GE+ G + +I+ +L
Sbjct: 131 VVDEKGEIVGDLNSLEILLAL 151
Score = 27.6 bits (62), Expect = 5.5
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 300 IQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIH----SLIGDIS 354
P + E ++++ ++ + + + +L G+I + ++ G I
Sbjct: 23 SLKPTVVEEDTPIEEIVDRILEDPVTRT-VYVARDNKLVGMIPVMHLLKVSGFHFFGFIP 81
Query: 355 NSYQEEIEFCEDGSWIISASMT 376
+ S M
Sbjct: 82 KEELIRSSMKRLIAKNASEIML 103
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 31.4 bits (70), Expect = 0.45
Identities = 6/65 (9%), Positives = 21/65 (32%)
Query: 300 IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQE 359
+ + +S + + V D L G+++ ++I + + ++
Sbjct: 14 MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILA 73
Query: 360 EIEFC 364
+
Sbjct: 74 KSATS 78
Score = 27.6 bits (60), Expect = 8.5
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 293 NIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
+D + + + T + + VIDE ++ G I +I
Sbjct: 186 PVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 30.3 bits (69), Expect = 0.62
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
I E I M + ++ ++L V+D+ +L GII+ DII ++
Sbjct: 92 ILEAIKKMDISGKKEEIINQL-PVVDKNNKLVGIISDGDIIRTI 134
Score = 28.8 bits (65), Expect = 1.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 300 IQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLIGD 352
+ + ++ E K K S L VID+ ++ GI+T DI ++LI D
Sbjct: 15 TKNVITAKRHEGVVEAFEKMLKYKISSL-PVIDDENKVIGIVTTTDIGYNLIRD 67
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 30.6 bits (69), Expect = 0.64
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
P + + +++ F+K ++ G L GIIT D++
Sbjct: 116 LSPFTVTDLTPMEIVVDIFRKLGLR-QCLVTHNGRLLGIITKKDVL 160
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 30.6 bits (70), Expect = 0.81
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 329 VIDEYGELEGIITINDIIH 347
V+DE G L GI+T++D++
Sbjct: 235 VVDEEGRLVGIVTVDDVLD 253
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 29.6 bits (67), Expect = 1.0
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ + +K+K V+ + L GIIT +D + I
Sbjct: 87 DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI 134
Score = 29.2 bits (66), Expect = 1.5
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 300 IQPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLIGDISNSYQ 358
+ P + T + + + ++D +L GI++ D++ + + S Q
Sbjct: 12 TRHPHTLLRTHTLNDAKHLMEALDIRHV-PIVDANKKLLGIVSQRDLLAAQESSLQRSAQ 70
Query: 359 EE 360
+
Sbjct: 71 GD 72
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 30.3 bits (69), Expect = 1.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 329 VIDEYGELEGIITINDIIH 347
V D L GI+T++DII
Sbjct: 237 VTDYDDHLLGIVTVDDIID 255
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 329 VIDEYGELEGIITINDII 346
VID+ GEL G +T+
Sbjct: 152 VIDDAGELIGRVTLRAAT 169
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 30.2 bits (69), Expect = 1.4
Identities = 3/34 (8%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
++ + K+E + + E
Sbjct: 86 KVKNWIS-NLEKNESTPDQNLDKESTDGKDTKSN 118
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 29.2 bits (66), Expect = 1.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353
+ +T QL+E + + ++E G L GII+I D++ + IG+I
Sbjct: 102 NVVRCQHNSTTDQLMEIMTGGRFR-HVPVEENGRLAGIISIGDVVKARIGEI 152
Score = 27.3 bits (61), Expect = 6.3
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 301 QPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLIGDISNSYQE 359
+ + + +S + T +K + +V D G + GI T D++ ++ G + S Q+
Sbjct: 35 RDVVTVGPDVSIGEAAGTLHAHKIGAV-VVTDADGVVLGIFTERDLVKAVAGQGAASLQQ 93
Query: 360 EIE 362
+
Sbjct: 94 SVS 96
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 29.5 bits (67), Expect = 2.4
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
IP ++M + ++ L++ + + G + I I
Sbjct: 47 IPMVSASMDTVT-----EARLAIALAQEGGIGFIHKNMSI 81
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 29.5 bits (67), Expect = 2.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 329 VIDEYGELEGIITINDII 346
V+DE G L GI+T++D++
Sbjct: 255 VVDEEGRLVGIVTVDDVL 272
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD 352
++ + ST + + +++ V+D G+L G+I+I D++ S+I D
Sbjct: 87 KVRYVEPSQSTDECMALMTEHRMRHLPVLDG-GKLIGLISIGDLVKSVIAD 136
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 28.0 bits (63), Expect = 3.5
Identities = 7/49 (14%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
++ + + + + V+D+ G++ G+++I D++ I
Sbjct: 83 QVAYVDLNNTNEDCMALITEMRVRHLPVLDD-GKVIGLLSIGDLVKDAI 130
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 27.5 bits (62), Expect = 4.4
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 329 VIDEYGELEGIITINDIIHSLI 350
VI E L GI+T DI L
Sbjct: 110 VISE-HRLVGIVTEADIARHLP 130
Score = 27.1 bits (61), Expect = 7.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 328 LVIDEYGELEGIITINDIIHSLI 350
+ + L G++T DI+ +
Sbjct: 43 PICGDDDRLHGMLTDRDIVIKGL 65
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication,
transcription, hydrolase, replication,transcription,
hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP:
d.136.1.3 d.136.1.3
Length = 544
Score = 28.1 bits (61), Expect = 7.0
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 266 KKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
+ + + +N+ + ID+T+ + L + FK KS+
Sbjct: 30 YSAEMENMAPVNSNNDSDDCVIVSESKIIDLTN-QEQDLSERIETNDTAKGAVFKLMKSD 88
Query: 326 LSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISA 373
D GE+E +IT+ DI + + S F + +++
Sbjct: 89 FYEREDFMGEVEDMITLKDIFGT--ETLKRSIL--FSFQYELDFLLRQ 132
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase;
2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A*
3sq3_A
Length = 470
Score = 28.0 bits (61), Expect = 7.2
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 318 TFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISA 373
FK KS+ D GE+E +IT+ DI + + S F + +++
Sbjct: 4 VFKLMKSDFYEREDFMGEVEDMITLKDIFGT--ETLKRSIL--FSFQYELDFLLRQ 55
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 25.6 bits (57), Expect = 7.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 327 SLVIDEYGELEGIITINDIIHSLIG 351
S V+ E E+ G++T DI+ ++
Sbjct: 25 SAVVMEGDEILGVVTERDILDKVVA 49
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 27.6 bits (60), Expect = 8.2
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 327 SLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW 369
+L I E+ ++DI+ + ++ E++E DG W
Sbjct: 302 NLAISEF--------VDDILQNCQKNV-----EQVELTSDGKW 331
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 27.6 bits (62), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 402 AGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNK 435
AG + F GH+ IS N + I IE N+ +
Sbjct: 572 AGPWLKFRGHLDNISNNLLIGAINIENRKANSVR 605
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.390
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,722,535
Number of extensions: 421521
Number of successful extensions: 1260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 148
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.3 bits)