RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2372
(447 letters)
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231
{Chromobacterium violaceum [TaxId: 536]}
Length = 87
Score = 81.3 bits (201), Expect = 1e-19
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
+EI EDGSW++ ++ DRF+E + P + N HTLAG ++ LG +P +++
Sbjct: 1 DEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDR 60
Query: 419 FIWKNIKIEVIDMNNNKIERLLVT 442
F W EV+DM+ +++++LV
Sbjct: 61 FEWNGFSFEVVDMDRTRVDKILVQ 84
>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa
[TaxId: 2371]}
Length = 87
Score = 79.3 bits (196), Expect = 4e-19
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
+ EDGS++I ++ + +E+L P NYHTLAG +++ G IP + E
Sbjct: 3 ALMVTREDGSFLIDGTLPIEELREVLG--AELPDGEENNYHTLAGMCISYFGRIPHVGEY 60
Query: 419 FIWKNIKIEVIDMNNNKIERLLVTILN 445
F W +IE++D++ +I++LL+ LN
Sbjct: 61 FDWAGWRIEIVDLDGARIDKLLLQRLN 87
>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus
ducreyi [TaxId: 730]}
Length = 82
Score = 76.6 bits (189), Expect = 4e-18
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
+ SW+I + + L+ NY T+ GF+M L IPK ++ ++
Sbjct: 4 NEDSWLIDGATPLEDVMRALNIHTFPR---DENYETIGGFMMYMLRKIPKKTDFVLYDKY 60
Query: 425 KIEVIDMNNNKIERLLVTILND 446
K E+ID N +I++L+V+ D
Sbjct: 61 KFEIIDTENFRIDQLMVSFRKD 82
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541
{Chlorobium tepidum [TaxId: 1097]}
Length = 84
Score = 75.5 bits (186), Expect = 1e-17
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
EDGSW++ + K+ L P + YHTL+G +M LG +P+ + W+N
Sbjct: 5 EDGSWLLDGLIAVPELKDTL-GLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENW 63
Query: 425 KIEVIDMNNNKIERLLVTILN 445
++EVIDM++ +I+++L T ++
Sbjct: 64 RLEVIDMDSKRIDKVLATKID 84
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227
{Nitrosomonas europaea [TaxId: 915]}
Length = 85
Score = 72.0 bits (177), Expect = 2e-16
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
DG+W++ ++ + LL + + + Y TL G+++ G+IP E +
Sbjct: 9 ADGTWLMDGWISIRKASNLLE--HDLVDE-AERYSTLGGYLLWQFGYIPAAGEQITVDGL 65
Query: 425 KIEVIDMNNNKIERLLVT 442
E++ +N + I ++ V
Sbjct: 66 IFEIVSVNKHNIGKVRVH 83
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272
{Porphyromonas gingivalis [TaxId: 837]}
Length = 87
Score = 69.0 bits (169), Expect = 2e-15
Identities = 12/80 (15%), Positives = 32/80 (40%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
DGS++ + + L N ++ TL+G + +P + + +++
Sbjct: 7 GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPF 66
Query: 425 KIEVIDMNNNKIERLLVTIL 444
+ +V M+ +I + +
Sbjct: 67 RFQVTQMDKRRIIEIKIFPF 86
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus
influenzae [TaxId: 727]}
Length = 78
Score = 67.7 bits (166), Expect = 5e-15
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
DGS II S ++ + + + T G ++ L IP +
Sbjct: 4 SDGSMIIDGSANLRDLNKMFN--WELDTE---DARTFNGLILEHLEEIPDEGTICEIDGL 58
Query: 425 KIEVIDMNNNKIERLLVT 442
I ++++ +N I++ V
Sbjct: 59 LITILEVGDNMIKQAKVV 76
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria
meningitidis [TaxId: 487]}
Length = 76
Score = 63.2 bits (154), Expect = 2e-13
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 368 SWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIE 427
S + ++ + L+ + + ++HT+AG +M L IP + + + + E
Sbjct: 2 SLTVEGALEYVELAPQLN--LPQQEE-DADFHTVAGLIMEELQTIPDVGDFADFHGWRFE 58
Query: 428 VIDMNNNKIERLLVTIL 444
V++ +IER+ +T L
Sbjct: 59 VVEKEGQRIERVKITKL 75
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537
{Neisseria meningitidis [TaxId: 487]}
Length = 84
Score = 61.6 bits (150), Expect = 8e-13
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
+ I W I A+ + + S T+ G V+ LGH+P E
Sbjct: 3 DNIHAVSSERWRIHAATEIEDINTFFG--TEYS---SEEADTIGGLVIQELGHLPVRGEK 57
Query: 419 FIWKNIKIEVIDMNNNKIERLLVTIL 444
+ ++ V +N ++ L+ T +
Sbjct: 58 VLIGGLQFTVARADNRRLHTLMATRV 83
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus
faecalis [TaxId: 1351]}
Length = 84
Score = 61.6 bits (150), Expect = 8e-13
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE--NFIWK 422
D +++ M D F E+ + + + T+AG+++T LG IP E +F
Sbjct: 7 ADNEYLVQGRMLIDEFNEVFE--TDLHMS---DVDTMAGYLITALGTIPDEGEKPSFEVG 61
Query: 423 NIKIEVIDMNNNKIERLLVTILN 445
NIK+ +M ++ L V +
Sbjct: 62 NIKLTAEEMEGTRLLVLRVHFYD 84
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693
{Streptococcus mutans [TaxId: 1309]}
Length = 84
Score = 57.9 bits (140), Expect = 2e-11
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIW--- 421
D ++I+ +MT + F E + S N T+AGF +T +G IP E +
Sbjct: 4 ADNTYIVLGTMTLNDFNEYFETDLE-----SDNVDTIAGFYLTGVGTIPSQEEKEHFEVE 58
Query: 422 ---KNIKIEVIDMNNNKIERLLVTI 443
K++++ + + ++ +L + +
Sbjct: 59 SNGKHLELINDKVKDGRVTKLKILV 83
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 98
Score = 57.1 bits (138), Expect = 4e-11
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
E+I W+I D + + ++ +Y T++G + + K +
Sbjct: 1 EDITETSPDKWLIDGDTPLDEVERAIGYELP-----EGDYETISGLLFDHANALLKTGDV 55
Query: 419 FIW-----------------KNIKIEVIDMNNNKIERLLVTIL 444
+ ++I V+++ N +L + +L
Sbjct: 56 IEIPLDFEPEDYLNNTSPTQRILRITVLEVERNVPVKLALALL 98
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 53.3 bits (127), Expect = 3e-09
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 17/149 (11%)
Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
+ L+ K+ + ++K ++ + P++ +G L
Sbjct: 10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 69
Query: 283 KKIISNRSIVNIDITS----------------AIQPPLFIPETISTMQLLETFKKNKSEL 326
+ + I + +P + I S + + +NK
Sbjct: 70 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHR 129
Query: 327 SLVID-EYGELEGIITINDIIHSLIGDIS 354
VID E G I+T I+ L I+
Sbjct: 130 LPVIDPESGNTLYILTHKRILKFLKLFIT 158
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 50.2 bits (119), Expect = 4e-08
Identities = 12/127 (9%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
+ + + + + + + + P+ ++ +I + I
Sbjct: 13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYN 71
Query: 292 VNIDITS--------AIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
+ + +++ +K + V+D+ G L G++T++
Sbjct: 72 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS 131
Query: 344 DIIHSLI 350
DI+ ++
Sbjct: 132 DILKYIL 138
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 46.4 bits (109), Expect = 8e-07
Identities = 13/129 (10%), Positives = 43/129 (33%), Gaps = 10/129 (7%)
Query: 231 LMTPRMK-VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR 289
L + + + L + + PV + +++ + +
Sbjct: 14 LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKT 72
Query: 290 SIVNIDITSA--------IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIIT 341
+ + L + ++ + + +V+DE+ ++GI++
Sbjct: 73 YNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVS 132
Query: 342 INDIIHSLI 350
++DI+ +L+
Sbjct: 133 LSDILQALV 141
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 45.3 bits (106), Expect = 2e-06
Identities = 15/131 (11%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI----- 291
+ +++ + + + + + + P+ ++ + + I
Sbjct: 13 NLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGDYSNLDLS 71
Query: 292 ---VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
+ + T + + K ++ V+DE +LEGI+++ DI++
Sbjct: 72 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNY 131
Query: 349 LIGDISNSYQE 359
+I D + +
Sbjct: 132 IIYDKTTTPGV 142
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 44.2 bits (103), Expect = 3e-06
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 3/122 (2%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILD---SSYNYFPVYKKSISKIIGTLNTKTLFKKIIS 287
M KV + + +N+E L+ + ++ + I + ++F
Sbjct: 7 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERI 66
Query: 288 NRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
++ + I+ + + V ++ EGI T ++
Sbjct: 67 EFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLK 126
Query: 348 SL 349
L
Sbjct: 127 EL 128
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 44.2 bits (103), Expect = 3e-06
Identities = 14/119 (11%), Positives = 44/119 (36%), Gaps = 2/119 (1%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
L+ + I + ++ + + + K + ++ + ++ R
Sbjct: 6 LLKRPPVS--LPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL 63
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
++ P+ + +T E +++ +V+++ GEL G+++I D+
Sbjct: 64 DLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 122
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 45.0 bits (105), Expect = 3e-06
Identities = 16/161 (9%), Positives = 50/161 (31%), Gaps = 25/161 (15%)
Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
+ + + ++ ++ ++ ++ +L + ++ P++ +K G L
Sbjct: 17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFV 76
Query: 283 KKIISNRSIVN--------------------IDITSAIQPPLFIPETISTMQLLETFKKN 322
I + I + +++ S M K+
Sbjct: 77 NVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS 136
Query: 323 KSELSLVIDEYGE-----LEGIITINDIIHSLIGDISNSYQ 358
++ +ID GE + ++T I+ + + +
Sbjct: 137 RARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAM 177
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 43.8 bits (102), Expect = 5e-06
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 293 NIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
+ + + P+++ + L+ N + V+DE GE+ G + +I+ +L
Sbjct: 83 AKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL 139
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 43.2 bits (101), Expect = 5e-06
Identities = 15/111 (13%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 240 FINIDDNIEKNLIKILDSSYNYFPVYK--KSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297
++ D + + P+ + S+++G ++++ + +I
Sbjct: 8 VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIM 67
Query: 298 SAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
+ + + P I+ + E +++K +++E EL II D+ +
Sbjct: 68 TKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN 118
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 44.1 bits (103), Expect = 5e-06
Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 32/163 (19%)
Query: 231 LMTPRMKVNFINI----DDNIEKNLIKILDSSYNYFPVYKKSIS-KIIGTLNTKTLFKKI 285
+M PR + + +E I +++Y+ FPV S +++G + + L I
Sbjct: 8 VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISI 67
Query: 286 ISNRSIVNIDITSAIQ-------------------------PPLFIPETISTMQLLETFK 320
+ R + ++++I P + + +++ F+
Sbjct: 68 ENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFR 127
Query: 321 KNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEF 363
K ++ G L GIIT D++ I ++N + I F
Sbjct: 128 KLGLRQ-CLVTHNGRLLGIITKKDVLKH-IAQMANQDPDSILF 168
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 43.0 bits (100), Expect = 7e-06
Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 8/124 (6%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+T + + + L ++ N V + L + S+
Sbjct: 6 WVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVF 63
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
P F+ E + L F +++ V+DE L+G ++++D + +LI
Sbjct: 64 NKVS------LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117
Query: 351 GDIS 354
++
Sbjct: 118 EALA 121
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 42.9 bits (100), Expect = 7e-06
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+M V+ I+I ++E L ++++ V K+ + I T + +
Sbjct: 5 VMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLA 62
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
V + P E KN L+++E E+ G+I+ DI+ + +
Sbjct: 63 EVKVWEVMERDLVTISPRATIKE-AAEKMVKNVVW-RLLVEEDDEIIGVISATDILRAKM 120
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 41.8 bits (97), Expect = 2e-05
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+MT I + L FPV K + + L +
Sbjct: 6 IMTQNPVT--ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLA 63
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
++ + + E + + + + +V+D G+ GI+T+ DII
Sbjct: 64 MLVK------RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117
Query: 351 GDI 353
Sbjct: 118 AKS 120
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 41.4 bits (96), Expect = 3e-05
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+M K +N + + +KI++ ++ Y V K +G L+ +++ K+ I
Sbjct: 8 IMNSNFKT--VNWNTTVFD-AVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64
Query: 291 IVNIDITSAIQPPLFIP--ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
+ + + +N E V+D+ G + GI+T+ D+
Sbjct: 65 KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124
Query: 349 L----IGDISNSYQEE 360
L I DI S++ +
Sbjct: 125 LSRASITDILLSHRTK 140
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 41.2 bits (95), Expect = 5e-05
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
Q P + E S + F + + V G+L G++ + +I ++ G
Sbjct: 111 QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIEG 160
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 40.2 bits (93), Expect = 8e-05
Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 4/127 (3%)
Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
++++ M + V + D + + + + V + +G + + +
Sbjct: 1 MEEEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK--PVGIITERDIV 56
Query: 283 KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
K I +S+ + I E L ++ V+D+ G L+GII+I
Sbjct: 57 KAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISI 116
Query: 343 NDIIHSL 349
DI ++
Sbjct: 117 RDITRAI 123
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 40.2 bits (93), Expect = 8e-05
Identities = 13/126 (10%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
MT K+ + ++++ +++ V + + + + + I+
Sbjct: 10 YMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP 67
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
+ + ++L +++ + ++I+E G++ GI T++D++ +
Sbjct: 68 YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIK-HILIEEEGKIVGIFTLSDLLEASR 126
Query: 351 GDISNS 356
+ +
Sbjct: 127 RRLETA 132
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 38.1 bits (87), Expect = 4e-04
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 10/124 (8%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
LM ++ +D + KI + V + I ++ T + + + +
Sbjct: 6 LMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSC 63
Query: 291 IVNIDITSAIQP--------PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
+ P P+ + T + V+D + GI+T
Sbjct: 64 SQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTE 123
Query: 343 NDII 346
+ +
Sbjct: 124 REFL 127
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 37.3 bits (85), Expect = 0.001
Identities = 16/136 (11%), Positives = 46/136 (33%), Gaps = 8/136 (5%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
M+ +++ I + +++ + +L + PV + + + +
Sbjct: 7 FMSTKVQT--IYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 64
Query: 291 IVNIDITSA------IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
+ + + I E S + + L++++ + GIIT D
Sbjct: 65 LDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERD 124
Query: 345 IIHSLIGDISNSYQEE 360
++ +L + +E
Sbjct: 125 LLIALHHILVMEKFKE 140
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 36.4 bits (83), Expect = 0.001
Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 241 INIDDNIEKNLIKILDSSYNYFPVYKKSIS-KIIGTLNTKTLFKKIISNRSIVNIDITSA 299
+ + + + + + P+ + + K++G + + + N I
Sbjct: 10 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMT--- 66
Query: 300 IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
+ + +++ E ++D G L G+ITI DI +
Sbjct: 67 SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 116
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 36.7 bits (84), Expect = 0.001
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 3/117 (2%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+MT I + + + + + + +Y + L + +I N
Sbjct: 6 IMTTEFVS--IVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDD 63
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
I + + + + +T + V D L GI+T++DII
Sbjct: 64 DTLIA-DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIID 119
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 35.6 bits (81), Expect = 0.003
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 6/121 (4%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
+M V + + + + + P+ ++ G L + + K ++
Sbjct: 6 IMNAG--VTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGL 62
Query: 291 IVNIDITSAIQP--PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
N + ++ S ++L ++++ VI E L GI+T DI
Sbjct: 63 DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH 121
Query: 349 L 349
L
Sbjct: 122 L 122
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 35.4 bits (80), Expect = 0.005
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
++ ++ K E VI G+L G+I D++ L+
Sbjct: 111 VATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 34.4 bits (78), Expect = 0.007
Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 231 LMTPRMK-VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR 289
L+ + V I DD++ + K+ + V K K++G L + +K
Sbjct: 7 LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE--KLVGILTERDFSRKSYLLD 64
Query: 290 SIVNIDI--TSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
V + ++ + + + + V+D+ G++ G+++I D++
Sbjct: 65 KPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD-GKVIGLLSIGDLVK 123
Query: 348 SLI 350
I
Sbjct: 124 DAI 126
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 32.6 bits (73), Expect = 0.037
Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 11/128 (8%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKK--------SISKIIGTLNTKTLF 282
+MT + + + + + P+ S ++ +
Sbjct: 7 MMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR 64
Query: 283 KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
+ + + + +K+K V+ + L GIIT
Sbjct: 65 SAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITD 123
Query: 343 NDIIHSLI 350
+D + I
Sbjct: 124 SDFVTIAI 131
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 32.1 bits (72), Expect = 0.058
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
LMTP + +E+ L + ++ + +Y + G L + +I
Sbjct: 6 LMTPE--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP 63
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
+ + +T ++ + V+DE G L GI+T++D++ L
Sbjct: 64 RTRVAEIMNPKVVYVRTDT-DQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 121
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 2.1
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 10/147 (6%)
Query: 201 REGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFIN-IDDNIEKNLIKILDSSY 259
E + +IE NL + + + +N +D EK ++ L
Sbjct: 51 LERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQEN 110
Query: 260 NYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETF 319
+ ++ + L + I + + L + ++ +L E
Sbjct: 111 PELAD--EIRRRMFVFEDILKLDDRSI------QLVLREVDTRDLALALKGASDELKEKI 162
Query: 320 KKNKSELSL-VIDEYGELEGIITINDI 345
KN S+ + ++ + E G + + D+
Sbjct: 163 FKNMSKRAAALLKDELEYMGPVRLKDV 189
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 26.8 bits (59), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 337 EGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELL 384
G + I DI+ L G + +S Q +C D W++ R K +L
Sbjct: 36 SGALHIKDILSPLFGTLVSSAQ--FNYCFDVDWLVKQYPPEFRKKPIL 81
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima
[TaxId: 2336]}
Length = 189
Score = 26.3 bits (56), Expect = 5.9
Identities = 12/84 (14%), Positives = 24/84 (28%)
Query: 349 LIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTF 408
++ D++ +E+ F G + E L + + +
Sbjct: 17 MVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKP 76
Query: 409 LGHIPKISENFIWKNIKIEVIDMN 432
+S N+ IEV D
Sbjct: 77 PIGTLILSARHEGNNVVIEVEDDG 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.390
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,647,733
Number of extensions: 80512
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 58
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)