BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2373
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 149/388 (38%), Positives = 226/388 (58%), Gaps = 32/388 (8%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
+ T++FPGQGSQ GMG LFD+F D+ +++ +LGYSI+ LC+ + +++L +T++TQPA
Sbjct: 6 LNTFMFPGQGSQAKGMGGALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPA 65
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
LY+VNAL+Y +++GE DFL GHSLGE+NAL +AG F FE GL+LV +R++LMSQ
Sbjct: 66 LYVVNALTYYAKCEDSGETPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAELMSQAR 125
Query: 121 DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
DGAMAA+ IAN NT +Q++I+GP ++I A+ F+ +
Sbjct: 126 DGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVR 185
Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
Y+ LN SG FHS++M+P + F L F P IPVISN A PY +++ L+ +
Sbjct: 186 YLRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGRVSEGLAQQI 245
Query: 241 INPVKWFDSIYYLL---NKSKNEMEFMEIGPGTVLTKFIKSIKNEY-------------- 283
+PV+W +SI YLL + +EF E+G G VLT+ + +I+ +
Sbjct: 246 ASPVRWCESIRYLLALAAERGEAIEFTELGHGDVLTRLVHTIRRQTPAPAAAATSARARP 305
Query: 284 ------------KKDCVIKDDILEQS--QEKKIEKWNNKYPIGTKVKVKG-YKDILITKT 328
D S +++ WN YP+GT+V+ + D+L T+T
Sbjct: 306 TPPGEPERPAQQTAAAPRASDSASASLGAAERVAAWNRDYPVGTRVRSSLIHDDVLETRT 365
Query: 329 KSMLLFENKAVIYIEGYNGYFLLDDVQP 356
+ +LF ++A +Y++GYNGYF L +V P
Sbjct: 366 PATVLFGHRAAVYMKGYNGYFDLAEVTP 393
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 171/285 (60%), Gaps = 8/285 (2%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
MK Y+FPGQGSQ GMG+ LFD FP + +++ +LGYSI+ LC + +L++T++TQPA
Sbjct: 1 MKAYMFPGQGSQAKGMGRALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPA 60
Query: 61 LYIVNALSYRDHIKNTGEYA--DFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
LY+VNALSY +K E A DFL GHSLGE++AL +AGVF FE GL LV+KR +LM
Sbjct: 61 LYVVNALSY---LKRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELMGD 117
Query: 119 VLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNN 178
G MAAV DIAN N+ +Q++I+G K++I Q+ FE
Sbjct: 118 ARGGGMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAG 177
Query: 179 A-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLS 237
A Y L VS FHSR+M+P +F FL + F P IPVISN A P + I LS
Sbjct: 178 AKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTARPCKADGIRAALS 237
Query: 238 NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
+ +PV+W +SI YL+ + EF+E G G VLT I+ +
Sbjct: 238 EQIASPVRWCESIRYLMGRGVE--EFVECGHGIVLTGLYAQIRRD 280
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 172/287 (59%), Gaps = 8/287 (2%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
MK Y+FPGQGSQ GMG+ LFD FP + +++ +LGYSI+ LC + +L++T++TQPA
Sbjct: 1 MKAYMFPGQGSQAKGMGRALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPA 60
Query: 61 LYIVNALSYRDHIKNTGEYA--DFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
LY+VNALSY +K E A DFL GHSLGE++AL +AGVF FE GL LV+KR +LM
Sbjct: 61 LYVVNALSY---LKRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELMGD 117
Query: 119 VLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNN 178
G MAAV DIAN N+ +Q++I+G K++I Q+ FE
Sbjct: 118 ARGGGMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAG 177
Query: 179 A-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLS 237
A Y L VS FHSR+M+P +F FL + F P IPVISN A P + I LS
Sbjct: 178 AKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTARPCKADGIRAALS 237
Query: 238 NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYK 284
+ +PV+W +SI YL+ + EF+E G G VLT I+ + +
Sbjct: 238 EQIASPVRWCESIRYLMGRGVE--EFVECGHGIVLTGLYAQIRRDAQ 282
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 149/285 (52%), Gaps = 12/285 (4%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
+LF GQG+QY+GMG+ +D++P + I++++ +LGY ++ L + +++LN+T YTQP
Sbjct: 5 AFLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDLRYL-IDTEEDKLNQTRYTQP 63
Query: 60 ALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
A+ + YR ++ G D + G SLGEY+AL ++G FED + LV KR M +
Sbjct: 64 AILATSVAIYR-LLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYMEEA 122
Query: 120 L---DGAMAAVX-XXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNA-QIFF 174
G M AV ANYNT QI+IAG ++ A ++
Sbjct: 123 APADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELLQ 182
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITN 234
E IPL VSGPFH+ ++P +K L F P++ N EA E I
Sbjct: 183 EAGAKRLIPLKVSGPFHTSLLEPASQKLAETLAQVSFSDFTCPLVGNTEAAVMQKEDIAQ 242
Query: 235 NLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L+ + PV++++SI + + F+EIGPG VL+ F+K I
Sbjct: 243 LLTRQVKEPVRFYESIGVMQEAGIS--NFIEIGPGKVLSGFVKKI 285
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 5 LFPGQGSQYVGMGQLLF---DKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPAL 61
+FPGQG+Q VGM Q LF D+ +I+ + L + I E + + +L +TE TQPAL
Sbjct: 15 IFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPAL 74
Query: 62 YIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLD 121
+ ++ + +KN DF +GHSLGEY++L +A V SFED +++V+KR +LM+Q
Sbjct: 75 -LTHSSALLAALKNLN--PDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFP 131
Query: 122 ---GAMAAVXXXXXXXXXXXXXXXXXXXXDI--ANYNTLNQIIIAGPKNDINNAQIFFEK 176
G+MAAV I AN N QI+++G K I+ EK
Sbjct: 132 TGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDE---LVEK 188
Query: 177 NNAI----YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSI-EK 231
++ +PL VSGPFHS MK I + F++++ F + PV+ N A + E
Sbjct: 189 GKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEV 248
Query: 232 ITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYK 284
I +N+ L +PV++ +S +L+++ + F+EIGPG VL+ IK I + K
Sbjct: 249 IKSNMVKQLYSPVQFINSTEWLIDQGVD--HFIEIGPGKVLSGLIKKINRDVK 299
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 11/286 (3%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
++FPGQGSQ VGM + +P + E +++ LGY + L + +LNKT TQP
Sbjct: 4 AFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 63
Query: 60 ALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
AL + YR + G+ + GHSLGEY+AL AGV F D +RLV+ R K M +
Sbjct: 64 ALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEA 123
Query: 120 L---DGAMAAVXXX-XXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDIN-NAQIFF 174
+ GAMAA+ N+N+ Q++IAG K +
Sbjct: 124 VPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACK 183
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEA-LPYSIEKIT 233
+PL VS P H MKP K L F++P +PV++N + + + I
Sbjct: 184 AAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIR 243
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
+ L L NPV+W S+ Y+ + + E+GPG VLT K I
Sbjct: 244 DALVRQLYNPVQWTKSVEYMAAQGVEHL--YEVGPGKVLTGLTKRI 287
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 11/286 (3%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
++FPGQGSQ VGM + +P + E +++ LGY + L + +LNKT TQP
Sbjct: 5 AFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 64
Query: 60 ALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
AL + YR + G+ + GHSLGEY+AL AGV F D +RLV+ R K M +
Sbjct: 65 ALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEA 124
Query: 120 L---DGAMAAVXXX-XXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDIN-NAQIFF 174
+ GAMAA+ N+N+ Q++IAG K +
Sbjct: 125 VPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACK 184
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEA-LPYSIEKIT 233
+PL VS P H MKP K L F++P +PV++N + + + I
Sbjct: 185 AAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIR 244
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
+ L L NPV+W S+ Y+ + + E+GPG VLT K I
Sbjct: 245 DALVRQLYNPVQWTKSVEYMAAQGVEHL--YEVGPGKVLTGLTKRI 288
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 11/284 (3%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFPD---IIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
+LF GQG+QYVGMG+ FD F + + ++S+ LG ++ELC + + LNKTE+TQPA
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV- 119
+ N ++ + G + G SLGEY+AL +G +FEDG++LV+KR K M +
Sbjct: 66 IITTN-MAILTALDKLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKFMQEAV 124
Query: 120 ---LDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
+ G +A + + ANYN+ QI+I+G + A F ++
Sbjct: 125 AEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKE 184
Query: 177 NNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEKITNN 235
I L VS PFH ++P +K + L + N V+SN + Y + I
Sbjct: 185 VGGRAIKLPVSAPFHCSMLQPAAEKLEDELNKISINKLNGIVMSNVKGEAYLEDDNIIEL 244
Query: 236 LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L++ + PV + + I ++ + F+EIGPG L+ F+K I
Sbjct: 245 LTSQVKKPVLFINDIEKMIESGVD--TFIEIGPGKALSGFVKKI 286
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 129/286 (45%), Gaps = 11/286 (3%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
++FPGQGSQ +GM L + P I E +++ G + L + LN+TEYTQP
Sbjct: 7 AFVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYTQP 66
Query: 60 ALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
AL +R G+ L GHSLGEY AL +AGV S DG LV+ R + M
Sbjct: 67 ALLAAGVAVWRLWTAQRGQRPALLAGHSLGEYTALVAAGVLSLHDGAHLVRLRGQFMQAA 126
Query: 120 LD---GAMAAVXXXXXXXXXXXXXXXXXXXXDI-ANYNTLNQIIIAGPKNDINNA-QIFF 174
GAMAAV + AN+N+ QI+I G ++ A +
Sbjct: 127 APAGVGAMAAVLGAEDAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLA 186
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEKIT 233
E+ + L VS P H+ M+ + + +H+P IPV+ N +A + I
Sbjct: 187 ERGVRKAVKLAVSVPSHTPLMRDAANQLGEAMAGLSWHAPQIPVVQNVDARVHDGSAAIR 246
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L L PV+W + L S+ E GPG VL+ IK I
Sbjct: 247 QALVEQLYLPVQWTGCVQAL--ASQGITRIAECGPGKVLSGLIKRI 290
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 134/289 (46%), Gaps = 18/289 (6%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDI------IEKSNNILGYSIKELCLKNSKNQLNKTEY 56
++FPGQGSQ VGM + F D+ ++++++ LG I +L ++LN T
Sbjct: 12 AFVFPGQGSQSVGM----LNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTN 67
Query: 57 TQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM 116
TQP + YR + G + GHSLGEY AL +AG +F D L LV+ R++ M
Sbjct: 68 TQPVMLTAAYACYRAWQQAGGAQPSIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAM 127
Query: 117 SQVLD---GAMAAVXXX-XXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNA-Q 171
+ G MAA+ + N+N Q++IAG K I A +
Sbjct: 128 QTAVPVGVGGMAAILGLDDDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACE 187
Query: 172 IFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFE-ALPYSIE 230
I EK +PL VS PFHS +KP K +L +P I V++N + A+
Sbjct: 188 IAKEKGAKRALPLPVSAPFHSSLLKPASDKLREYLAGVDVKAPKISVVNNIDVAVVSDPA 247
Query: 231 KITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
I + L PV+W + + ++ + + +E GPG VL K I
Sbjct: 248 AIKDALVRQAAGPVRWVECVQHIAREGVTHV--IECGPGKVLAGLTKRI 294
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 140/306 (45%), Gaps = 12/306 (3%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYT 57
M LFPGQGS VGMG+ L++ P ++++++ L +K L + + L TE
Sbjct: 1 MYAALFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALPGLLK-LMWEGPEEALTLTENQ 59
Query: 58 QPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMS 117
QPAL +YR ++ G+ GHSLGE+ A +AG ED LRLV+ R + M
Sbjct: 60 QPALLAAGYAAYRAFLEAGGKPPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQ 119
Query: 118 QVL---DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFF 174
+ + +GAMAAV +IAN N Q +I+G + + A
Sbjct: 120 EAVPVGEGAMAAV--LKLPLEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERL 177
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKIT 233
++ A + L VS PFHS M P K+ L P PV SN A P E+I
Sbjct: 178 KERRARVVFLPVSAPFHSSLMAPARKRLAEDLAQVPLRRPRFPVYSNVTARPEEDPERIR 237
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDI 293
L + PV+W + + + +++ F+E G G VL + E + V D
Sbjct: 238 ALLLEQITAPVRWVEILRDM--EARGVKRFLEFGSGEVLKGLVLRTLKEAEALSVQDPDS 295
Query: 294 LEQSQE 299
L ++ E
Sbjct: 296 LRKALE 301
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 126/286 (44%), Gaps = 11/286 (3%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
++FPGQGSQ VG +P + E +++ LGY + L + +LNKT TQP
Sbjct: 8 AFVFPGQGSQSVGXLAEXAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 67
Query: 60 ALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
AL + +R + G+ GHSLGEY+AL AGV +F D +RLV+ R K +
Sbjct: 68 ALLTASVALWRVWQQQGGKXPALXAGHSLGEYSALVCAGVINFADAVRLVEXRGKFXQEA 127
Query: 120 L----DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDIN-NAQIFF 174
+ G A + N+N+ Q++IAG K +
Sbjct: 128 VPEGTGGXSAIIGLDDASIAKACEESAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACK 187
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEA-LPYSIEKIT 233
+PL VS P H KP K L F +P +PV++N + I
Sbjct: 188 AAGAKRALPLPVSVPSHCALXKPAADKLAVELAKITFSAPTVPVVNNVDVKCETDAAAIR 247
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
+ L L NPV+W S+ ++ + + E+GPG VLT K I
Sbjct: 248 DALVRQLYNPVQWTKSVEFIAAQGVEHL--YEVGPGKVLTGLTKRI 291
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 141/294 (47%), Gaps = 14/294 (4%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPD---IIEKSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
+ FPGQGSQ +GMG++L ++F + E+ ++ L + ++ + + L T QP
Sbjct: 8 AFTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQP 67
Query: 60 ALYIVNALSYRDHIK---NTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM 116
AL V+ R + N + F+ GHSLGEY+AL +AG FS D RL++ R M
Sbjct: 68 ALMAVSMAVIRVMEQLGLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGNAM 127
Query: 117 SQVL---DGAMAA-VXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNA-Q 171
+ +G+MAA + IAN N QI+I+G + A +
Sbjct: 128 QAAVAVGEGSMAALIGLDEKDVEEICEIVAEEGLCQIANDNGGGQIVISGEAKAVETAVE 187
Query: 172 IFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IE 230
+ +K + L VS PFHS M+P N LL +P +P+I+N +P S E
Sbjct: 188 VASQKGAKRAVLLPVSAPFHSALMQPAANAMKNALLTVNKTAPIVPLIANVSVIPESDPE 247
Query: 231 KITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYK 284
+I + L + V+W ++I ++ N + EIG G VLT + I + K
Sbjct: 248 RIVSLLVQQVTGRVRWRETIEWISANGVNTL--FEIGSGKVLTGLARRINKDIK 299
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 11/284 (3%)
Query: 5 LFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQPAL 61
+FPGQGSQ VG L +++ + + +++ +LGY + L LN+T TQPAL
Sbjct: 12 VFPGQGSQAVGXLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQPAL 71
Query: 62 YIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLD 121
+ +R + E L GHSLGEY+AL AGV F+ ++LV+ R +L Q +
Sbjct: 72 LAASVAIWRVWQQLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRGQLXQQAVP 131
Query: 122 GAMAA----VXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKN 177
A + N+N+ Q++IAG K+ + A + ++
Sbjct: 132 AGTGAXYAIIGLEDEAIAKACADAAQGEVVSPVNFNSPGQVVIAGQKDAVERAGVLCKEA 191
Query: 178 NA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIE-KITNN 235
A +PL VS P H KP + L + F++P IPVI+N + + + KI +
Sbjct: 192 GAKRALPLPVSVPSHCALXKPAADELAKTLAELEFNAPQIPVINNVDVVAETDPVKIKDA 251
Query: 236 LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L L +PV+W + + ++ + +E GPG VLT K I
Sbjct: 252 LIRQLYSPVRWTECVEQ--XSAQGVEKLIEXGPGKVLTGLTKRI 293
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 11/289 (3%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
++FPGQGSQ++G L + P ++E ++++ L Y + L + +L++T++TQP
Sbjct: 9 AFVFPGQGSQHLGXLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQP 68
Query: 60 ALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
AL + +R G GHSLGEY AL AG FE+ ++LV+KR + +
Sbjct: 69 ALLTADVAIFRCWEALGGPKPQVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQYXQEA 128
Query: 120 L---DGAMAAVXXX-XXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFE 175
+ +GA A+ AN N+ +Q +I+G ++ A +
Sbjct: 129 VPVGEGAXGAIIGLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNXAK 188
Query: 176 KNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITN 234
A I + VS P H +P + + SP +PVI N + + ++ I
Sbjct: 189 TEGAKIAKRIPVSVPSHCPLXQPAADRLAQDIAKISIDSPKVPVIHNVDVVDHNEANIIR 248
Query: 235 N-LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
L L+ PV+W ++I Y+ + + F E GP L IK I +
Sbjct: 249 GALIKQLVRPVRWVETIKYI--EEQGIKVFXECGPDNKLAGLIKRIDRQ 295
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 24/292 (8%)
Query: 5 LFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPAL 61
LFPGQGSQ +GMG+ ++ ++ E+++N L +K+ + ++ L ++ YTQPA+
Sbjct: 18 LFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFEENE-LLKESAYTQPAI 76
Query: 62 YIVNALSYR--DHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV 119
Y+V+ ++Y+ + N G F +GHSLGE +A+ +G FE L+L +R K+M +
Sbjct: 77 YLVSYIAYQLLNKQANGGLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEA 136
Query: 120 L---DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
D +M V AN+N Q+++AG K+D+ + ++
Sbjct: 137 CANKDASMMVVLGVSEESLLSLCQRTKNVW--CANFNGGMQVVLAGVKDDLKALEPTLKE 194
Query: 177 NNA---IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEKI 232
A +++ ++V+ H +++P+ KF L + + +ISN Y + K
Sbjct: 195 MGAKRVVFLEMSVAS--HCPFLEPMIFKFQELLEKSLKDKFHFEIISNATNEAYHNKAKA 252
Query: 233 TNNLSNHLINPVKWFDSIYYLLNKSKNEME--FMEIGPGTVLTKFIKSIKNE 282
LS L PV++ D + KS N+ F E+G G+VL K + N+
Sbjct: 253 VELLSLQLTQPVRYQDCV-----KSNNDRVDIFFELGCGSVLKGLNKRLSNK 299
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 31/301 (10%)
Query: 5 LFPGQGSQYVGMGQLLFDKFPDIIE---KSNNILGYSIKELCLKNSKNQLNKTEYTQPAL 61
LFPGQGSQ VGMG+ L + +P + E + +LGY + EL L + L++T + QPA+
Sbjct: 30 LFPGQGSQVVGMGRGLLN-YPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPAI 88
Query: 62 YIVN--ALSYRDHIK-NTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM-- 116
++ + A+ H++ + E G S+GE+ AL AG F +GL V+ R++ M
Sbjct: 89 FVASLAAVEKLHHLQPSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAEAMQE 148
Query: 117 -SQVLDGAMAAVX---------XXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKND 166
S+ + M +V +++NY + +I+G +
Sbjct: 149 ASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISGHQEA 208
Query: 167 I-----NNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISN 221
+ N+++ F + L VSG FH+R M+P + L P + V SN
Sbjct: 209 LRFLQKNSSKFHFRRTRM----LPVSGAFHTRLMEPAVEPLTQALKAVDIKKPLVSVYSN 264
Query: 222 FEALPYSIE-KITNNLSNHLINPVKWFDSIYYLLNKSKNEM--EFMEIGPGTVLTKFIKS 278
Y I L+ L++PVKW +++ + + K + E+GPG L +KS
Sbjct: 265 VHGHRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAILKS 324
Query: 279 I 279
Sbjct: 325 C 325
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 118/307 (38%), Gaps = 17/307 (5%)
Query: 1 MKTYLFPGQGSQYVG--MGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
M + PGQG+Q G L D + ++ +G + K +++ T Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
P L LS TG + GHS+GE A AGV L LV++R M++
Sbjct: 62 PLLVAAGILSAA--ALGTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAE 119
Query: 119 ---VLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFE 175
V + M+A+ AN N QI+ AG + A + +
Sbjct: 120 AAAVTETGMSALLGGDPEVSVAHLERLGLTP---ANVNGAGQIVAAGTMEQL--AALNED 174
Query: 176 KNNAI--YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEKI 232
K + +PL V+G FH+R+M P K P + +SN + S ++
Sbjct: 175 KPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEV 234
Query: 233 TNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDD 292
+ L + NPV+W + K +E+ PG LT K K + D
Sbjct: 235 LDRLVGQVANPVRW--DLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALKTPD 292
Query: 293 ILEQSQE 299
L+ ++E
Sbjct: 293 DLDAARE 299
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 118/307 (38%), Gaps = 17/307 (5%)
Query: 1 MKTYLFPGQGSQYVG--MGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
M + PGQG+Q G L D + ++ +G + K +++ T Q
Sbjct: 1 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 60
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
P L LS TG + GHS+GE A AGV L LV++R M++
Sbjct: 61 PLLVAAGILSA--AALGTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAE 118
Query: 119 ---VLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFE 175
V + M+A+ AN N QI+ AG + A + +
Sbjct: 119 AAAVTETGMSALLGGDPEVSVAHLERLGLTP---ANVNGAGQIVAAGTMEQL--AALNED 173
Query: 176 KNNAI--YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEKI 232
K + +PL V+G FH+R+M P K P + +SN + S ++
Sbjct: 174 KPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEV 233
Query: 233 TNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDD 292
+ L + NPV+W + K +E+ PG LT K K + D
Sbjct: 234 LDRLVGQVANPVRW--DLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALKTPD 291
Query: 293 ILEQSQE 299
L+ ++E
Sbjct: 292 DLDAARE 298
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 120/315 (38%), Gaps = 23/315 (7%)
Query: 1 MKTYLFPGQGSQYVG--MGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
M + PGQG+Q G L D + ++ +G + K +++ T Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 59 PALYIVN-----ALSYRDHIKNT---GEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQ 110
P L AL + + + G + GHS+GE A AGV L LV+
Sbjct: 62 PLLVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVR 121
Query: 111 KRSKLMSQ---VLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDI 167
+R M++ V + M+A+ AN N QI+ AG +
Sbjct: 122 RRGLAMAEAAAVTETGMSALLGGDPEVSVAHLERLGLTP---ANVNGAGQIVAAGTMEQL 178
Query: 168 NNAQIFFEKNNAI--YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEAL 225
A + +K + +PL V+G FH+R+M P K P + +SN +
Sbjct: 179 --AALNEDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGR 236
Query: 226 PY-SIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYK 284
S ++ + L + NPV+W + K +E+ PG LT K K
Sbjct: 237 AVASGTEVLDRLVGQVANPVRW--DLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVK 294
Query: 285 KDCVIKDDILEQSQE 299
+ D L+ ++E
Sbjct: 295 TLALKTPDDLDAARE 309
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 28/289 (9%)
Query: 5 LFPGQGSQYVGMGQLLFDK---FPDIIEKSNNILG----YSIKELCLKNSKNQLNKTEYT 57
+FPGQG+Q+ G + L + F D I L +S+ +L + L++ +
Sbjct: 556 VFPGQGAQWQGXARDLLRESQVFADSIRDCERALAPHVDWSLTDLL--SGARPLDRVDVV 613
Query: 58 QPALYIVN---ALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
QPAL+ V A +R H G +VGHS GE A AG + ED +LV RS+
Sbjct: 614 QPALFAVXVSLAALWRSH----GVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVAVRSR 669
Query: 115 LMSQVLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINN--AQI 172
++ + L G IA+ N +++AG ++ A+
Sbjct: 670 VLRR-LGGQGGXASFGLGTEQAAERIGRFAGALSIASVNGPRSVVVAGESGPLDELIAEC 728
Query: 173 FFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKI 232
E + A IP++ + HS ++ + ++ L S ++ + S P I+
Sbjct: 729 EAEAHKARRIPVDYA--SHSPQVESLREELLTELAGISPVSADVALYSTTTGQP--IDTA 784
Query: 233 TNNLS---NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKS 278
T + + +L V++ D+ L + F+E+ P VLT I++
Sbjct: 785 TXDTAYWYANLREQVRFQDATRQLAEAGFD--AFVEVSPHPVLTVGIEA 831
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 98/278 (35%), Gaps = 23/278 (8%)
Query: 5 LFPGQGS----QYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
LFPGQ + +G LL D D S+ G E T QPA
Sbjct: 105 LFPGQAAPVHADRGALGHLLGDA--DAGTGSDPDSGVKPAEPV---------DTAVAQPA 153
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
+ I ++L+ + G +GHSLGE AL AG +D L L + R + MS
Sbjct: 154 I-IADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAAT 212
Query: 121 DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
+ + +A N +++AG + +++
Sbjct: 213 EAPSGMLSLRADLAAARELAAGTGAV--VAVDNGERHVVVAGTRPELDRVAEAARHAGIE 270
Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
PL VS FHS M P + + P PV S ++ E L L
Sbjct: 271 ATPLAVSHAFHSPLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWWADEDPVEVLVRQL 330
Query: 241 INPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKS 278
PV+ + + +E+GPG +L+ ++
Sbjct: 331 TGPVR-----FREALGLLDADLLVEVGPGRMLSALAEA 363
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 98/278 (35%), Gaps = 23/278 (8%)
Query: 5 LFPGQGS----QYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
LFPGQ + +G LL D D S+ G E T QPA
Sbjct: 102 LFPGQAAPVHADRGALGHLLGDA--DAGTGSDPDSGVKPAEPV---------DTAVAQPA 150
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
+ I ++L+ + G +GHSLGE AL AG +D L L + R + MS
Sbjct: 151 I-IADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAAT 209
Query: 121 DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
+ + +A N +++AG + +++
Sbjct: 210 EAPSGMLSLRADLAAARELAAGTGAV--VAVDNGERHVVVAGTRPELDRVAEAARHAGIE 267
Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
PL VS FHS M P + + P PV S ++ E L L
Sbjct: 268 ATPLAVSHAFHSPLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWWADEDPVEVLVRQL 327
Query: 241 INPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKS 278
PV+ + + +E+GPG +L+ ++
Sbjct: 328 TGPVR-----FREALGLLDADLLVEVGPGRMLSALAEA 360
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 98/278 (35%), Gaps = 23/278 (8%)
Query: 5 LFPGQGS----QYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
LFPGQ + +G LL D D S+ G E T QPA
Sbjct: 105 LFPGQAAPVHADRGALGHLLGDA--DAGTGSDPDSGVKPAEPV---------DTAVAQPA 153
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
+ I ++L+ + G +GHSLGE AL AG +D L L + R + MS
Sbjct: 154 I-IADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSVAT 212
Query: 121 DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
+ + +A N +++AG + +++
Sbjct: 213 EAPSGMLSLRADLAAARELAAGTGAV--VAVDNGERHVVVAGTRPELDRVAEAARHAGIE 270
Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
PL VS FHS M P + + P PV S ++ E L L
Sbjct: 271 ATPLAVSHAFHSPLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWWADEDPVEVLVRQL 330
Query: 241 INPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKS 278
PV+ + + +E+GPG +L+ ++
Sbjct: 331 TGPVR-----FREALGLLDADLLVEVGPGRMLSALAEA 363
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP-------DIIEKSNNILGYSIKELCLKNSKNQ--LNKT 54
+LFPGQGSQ+ GMG L P E + + + ++ L+ + L++
Sbjct: 536 FLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDV-LRQAPGAPGLDRV 594
Query: 55 EYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
+ QP L+ V +S + ++ G +VGHS GE A AG + ED +LV RS+
Sbjct: 595 DVVQPVLFAVM-VSLAELWRSYGVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVVGRSR 653
Query: 115 LMSQVL-DGAMAAV 127
LM + +G MAAV
Sbjct: 654 LMRSLSGEGGMAAV 667
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 94/255 (36%), Gaps = 14/255 (5%)
Query: 1 MKTYLFPGQGSQYVGM--GQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
M L PGQGSQ GM L D I + + L S ++ T Q
Sbjct: 2 MIALLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADLDLARLGTTASTEEITDTAVAQ 61
Query: 59 PALYIVNALSYRDHIKN---TGEYADFLV-GHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
P + L++++ + G+ D +V GHS+GE A AGV + +D + L R
Sbjct: 62 PLIVAATLLAHQELARRCVLAGK--DVIVAGHSVGEIAAYAIAGVIAADDAVALAATRGA 119
Query: 115 LMSQVLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFF 174
M++ + AN N QI+ AG + +
Sbjct: 120 EMAKACATEPTGMSAVLGGDETEVLSRLEQLDLVPANRNAAGQIVAAG---RLTALEKLA 176
Query: 175 E--KNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEK 231
E A L V+G FH+ +M P F + P ++SN + P S
Sbjct: 177 EDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTATLLSNRDGKPVTSAAA 236
Query: 232 ITNNLSNHLINPVKW 246
+ L + L PV+W
Sbjct: 237 AMDTLVSQLTQPVRW 251
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 94/255 (36%), Gaps = 14/255 (5%)
Query: 1 MKTYLFPGQGSQYVGM--GQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
M L PGQGSQ GM L D I + + L S ++ T Q
Sbjct: 21 MIALLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADLDLARLGTTASTEEITDTAVAQ 80
Query: 59 PALYIVNALSYRDHIKN---TGEYADFLV-GHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
P + L++++ + G+ D +V GHS+GE A AGV + +D + L R
Sbjct: 81 PLIVAATLLAHQELARRCVLAGK--DVIVAGHSVGEIAAYAIAGVIAADDAVALAATRGA 138
Query: 115 LMSQVLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFF 174
M++ + AN N QI+ AG + +
Sbjct: 139 EMAKACATEPTGMSAVLGGDETEVLSRLEQLDLVPANRNAAGQIVAAG---RLTALEKLA 195
Query: 175 E--KNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEK 231
E A L V+G FH+ +M P F + P ++SN + P S
Sbjct: 196 EDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTATLLSNRDGKPVTSAAA 255
Query: 232 ITNNLSNHLINPVKW 246
+ L + L PV+W
Sbjct: 256 AMDTLVSQLTQPVRW 270
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 28/301 (9%)
Query: 4 YLFPGQGSQYVGMGQLL--FDKFPDIIEKSNNIL---GYSIKELCLKNSKNQLNKTEYTQ 58
++ G G+Q+ GMG L D+F D I +S+ + G + +L L ++ + ++
Sbjct: 96 FICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSF 155
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM-- 116
+L + + D + G D +VGHSLGE + G S E+ + R + +
Sbjct: 156 VSLTAIQ-IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKE 214
Query: 117 SQVLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
+ + GAMAAV A +N+ + + I+GP+ + K
Sbjct: 215 AHLPPGAMAAVGLSWEECKQRCPPGVVP-----ACHNSKDTVTISGPQAPVFEFVEQLRK 269
Query: 177 NNAIYIPLNVSG-PFHSRYMK----PIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK 231
+ G FHS +M+ P+ ++ + + S S EA +S
Sbjct: 270 EGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLA 329
Query: 232 ITNNLS---NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCV 288
T++ N+L++PV + ++++++ +EI P +L +K K C
Sbjct: 330 RTSSAEYNVNNLVSPVLFQEALWHV----PEHAVVLEIAPHALLQAV---LKRGLKPSCT 382
Query: 289 I 289
I
Sbjct: 383 I 383
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 28/301 (9%)
Query: 4 YLFPGQGSQYVGMGQLL--FDKFPDIIEKSNNIL---GYSIKELCLKNSKNQLNKTEYTQ 58
++ G G+Q+ GMG L D+F D I +S+ + G + +L L ++ + ++
Sbjct: 496 FICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSF 555
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM-- 116
+L + + D + G D +VGHSLGE + G S E+ + R + +
Sbjct: 556 VSLTAIQ-IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKE 614
Query: 117 SQVLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
+ + GAMAAV A +N+ + + I+GP+ + K
Sbjct: 615 AHLPPGAMAAVGLSWEECKQRCPPGVVP-----ACHNSKDTVTISGPQAPVFEFVEQLRK 669
Query: 177 NNAIYIPLNVSG-PFHSRYMK----PIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK 231
+ G FHS +M+ P+ ++ + + S S EA +S
Sbjct: 670 EGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLA 729
Query: 232 ITNNLS---NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCV 288
T++ N+L++PV + ++++++ +EI P +L +K K C
Sbjct: 730 RTSSAEYNVNNLVSPVLFQEALWHV----PEHAVVLEIAPHALLQAV---LKRGLKPSCT 782
Query: 289 I 289
I
Sbjct: 783 I 783
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 28/301 (9%)
Query: 4 YLFPGQGSQYVGMGQLL--FDKFPDIIEKSNNIL---GYSIKELCLKNSKNQLNKTEYTQ 58
++ G G+Q+ GMG L D+F D I +S+ + G + +L L ++ + ++
Sbjct: 96 FICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSF 155
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM-- 116
+L + + D + G D +VGHSLGE + G S E+ + R + +
Sbjct: 156 VSLTAIQ-IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKE 214
Query: 117 SQVLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
+ + GAMAAV A +N+ + + I+GP+ + K
Sbjct: 215 AHLPPGAMAAVGLSWEECKQRCPPGVVP-----AXHNSKDTVTISGPQAPVFEFVEQLRK 269
Query: 177 NNAIYIPLNVSG-PFHSRYMK----PIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK 231
+ G FHS +M+ P+ ++ + + S S EA +S
Sbjct: 270 EGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLA 329
Query: 232 ITNNLS---NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCV 288
T++ N+L++PV + ++++++ +EI P +L +K K C
Sbjct: 330 RTSSAEYNVNNLVSPVLFQEALWHV----PEHAVVLEIAPHALLQAV---LKRGLKPSCT 382
Query: 289 I 289
I
Sbjct: 383 I 383
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 14/203 (6%)
Query: 4 YLFPGQGSQYVGMGQLL--FDKFPDIIEKSNNIL---GYSIKELCLKNSKNQLNKTEYTQ 58
++ G G+Q+ GMG L D+F D I +S+ L G + +L L + L+ +
Sbjct: 494 FICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSF 553
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
+L + ++ D + + G D ++GHSLGE + G + E+ + R + +
Sbjct: 554 VSLTSIQ-IALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEEAVLSSYWRGYCIKE 612
Query: 119 --VLDGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
VL GAMAAV A +N+ + + I+GP+ ++ ++
Sbjct: 613 ANVLPGAMAAVGLSWEECKQRCPPGIVP-----ACHNSKDTVTISGPQAAMSEFLQQLKR 667
Query: 177 NNAIYIPLNVSG-PFHSRYMKPI 198
+ + G FHS +M+ I
Sbjct: 668 EDVFVKEVRTGGIAFHSYFMESI 690
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 43 CLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEY-ADF-LVGHSLGEYNALES-AGV 99
++ K L+ T++TQPAL ++ ++ D +K+ G AD GHSLGEY AL S A V
Sbjct: 1763 TFRSEKGLLSATQFTQPALTLMEKAAFED-LKSKGLIPADATFAGHSLGEYAALASLADV 1821
Query: 100 FSFEDGLRLVQKRSKLM 116
S E + +V R M
Sbjct: 1822 MSIESLVEVVFYRGMTM 1838
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 4 YLFPGQGSQYVGMGQLL------FDKFPDIIEK-SNNILGYSIKELCLKNSKNQLNK--- 53
Y FPGQG Q+ GMG + K D +K + LG+S+ + N + +
Sbjct: 1350 YAFPGQGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIASGVH 1409
Query: 54 ----------TEYTQPALYIVNALSYRDHIKNTGEYADFLV--GHSLGEYNALES-AGVF 100
T++TQ A+ V A + ++ G + + + GHS+GEY AL +GV+
Sbjct: 1410 YHHPDGVLFLTQFTQVAMATVAAAQVAE-MREQGAFVEGAIACGHSVGEYTALACVSGVY 1468
Query: 101 SFEDGLRLVQKRSKLMSQVL 120
E L +V R M ++
Sbjct: 1469 ELEALLEVVFHRGSKMHDIV 1488
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 43 CLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEY-ADF-LVGHSLGEYNALES-AGV 99
++ K L+ T++TQPAL ++ ++ D +K+ G AD GHSLGEY AL S A V
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFED-LKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 100 FSFEDGLRLVQKRSKLM 116
S E + +V R M
Sbjct: 1777 MSIESLVEVVFYRGMTM 1793
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 51 LNKTEYTQPALYIVNALSYRD-HIKNTGEYADFLVGHSLGEYNALES-AGVFSFEDGLRL 108
L+ T++TQPAL ++ S+ D K + GHSLGEY+AL + A V E + +
Sbjct: 1782 LSATQFTQPALTLMEKASFEDMRSKGLVQRDSTFAGHSLGEYSALVALADVMPIESLVSV 1841
Query: 109 VQKRSKLM 116
V R M
Sbjct: 1842 VFYRGLTM 1849
>pdb|3VTZ|A Chain A, Structure Of Thermoplasma Volcanium Aldohexose
Dehydrogenase
pdb|3VTZ|B Chain B, Structure Of Thermoplasma Volcanium Aldohexose
Dehydrogenase
pdb|3VTZ|C Chain C, Structure Of Thermoplasma Volcanium Aldohexose
Dehydrogenase
pdb|3VTZ|D Chain D, Structure Of Thermoplasma Volcanium Aldohexose
Dehydrogenase
Length = 269
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 266 IGPGTVLTKF-IKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIG 312
+ PGT++T IK+ K E +D E + E+KIE+W ++P+G
Sbjct: 180 VCPGTIMTPMVIKAAKMEVGED--------ENAVERKIEEWGRQHPMG 219
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 6 FPGQGSQYVGMGQLLF-DKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIV 64
FPG+ SQ G LF D+ + + +N++ +EL N NQ+ + + +
Sbjct: 316 FPGK-SQIGDRGSALFEDQAITAVNRFHNVMAGQPEELSNPNGNNQIFMNQRGSHGVVLA 374
Query: 65 NALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDG 105
NA S I + D G Y+ AG F DG
Sbjct: 375 NAGSSSVSINTATKLPD-------GRYDNKAGAGSFQVNDG 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,229,307
Number of Sequences: 62578
Number of extensions: 414079
Number of successful extensions: 1090
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 50
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)