RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2373
(358 letters)
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
This enzyme of fatty acid biosynthesis transfers the
malonyl moeity from coenzyme A to acyl-carrier protein.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 290
Score = 307 bits (788), Expect = e-104
Identities = 128/290 (44%), Positives = 186/290 (64%), Gaps = 10/290 (3%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEK---SNNILGYSIKELCLKNSKNQLNKTEYT 57
Y+FPGQGSQ VGMG+ L++++P E ++ LGY +K+LC + +LNKT+YT
Sbjct: 2 KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQYT 61
Query: 58 QPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMS 117
QPALY+V+A+ Y + G DF GHSLGEY+AL +AG FE L+LV+KR +LM
Sbjct: 62 QPALYVVSAILYLKLKEQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQ 121
Query: 118 QVL---DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFF 174
+ + GAMAAVIG++ +++ +E N +D+AN+N+ Q++I+G K+ + A F
Sbjct: 122 EAVPEGGGAMAAVIGLDEEQLAQACEEATENDVDLANFNSPGQVVISGTKDGVEAAAALF 181
Query: 175 EKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKI 232
++ A +PL VSG FHSR+MKP +KF L F+ P +PVISN +A PY+ ++I
Sbjct: 182 KEMGAKRAVPLEVSGAFHSRFMKPAAEKFAETLEACQFNDPTVPVISNVDAKPYTNGDRI 241
Query: 233 TNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
LS L +PV+W DS+ L+ ++ EF E+GPG VLT IK IKN+
Sbjct: 242 KEKLSEQLTSPVRWTDSVEKLM--ARGVTEFAEVGPGKVLTGLIKRIKND 289
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 287 bits (736), Expect = 7e-96
Identities = 120/311 (38%), Positives = 177/311 (56%), Gaps = 13/311 (4%)
Query: 1 MKT-YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEY 56
KT ++FPGQGSQ +GMG+ L++ P + ++++ LG+ + L + + +LN T+
Sbjct: 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQN 61
Query: 57 TQPALYIVNALSYRDHIKNT-GEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKL 115
TQPAL +V+ +YR + G DF+ GHSLGEY+AL +AGV SFED L+LV+KR KL
Sbjct: 62 TQPALLLVSLAAYRVLAEQGLGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKL 121
Query: 116 MSQ---VLDGAMAAVIGINYKKILNILKENNL-NTIDIANYNTLNQIIIAGPKNDINNAQ 171
M + +G MAAV+G++ +++ +E ++IANYN+ QI+I+G K + A
Sbjct: 122 MQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEKAA 181
Query: 172 IFFEKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALP-YSI 229
++ A IPL VSGPFHS MKP + L F P +PVISN +A P
Sbjct: 182 EILKEAGAKRAIPLPVSGPFHSPLMKPAADELAEALEKVRFSDPLVPVISNVDAKPVLDG 241
Query: 230 EKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVI 289
E+I L+ L +PV+W +++ L K+ F+EIGPG VLT K I V
Sbjct: 242 EEIRELLAKQLTSPVRWTETVETL--KADGVTRFVEIGPGKVLTGLAKRILKGLGVRAVG 299
Query: 290 KDDILEQSQEK 300
+ L + E
Sbjct: 300 SLEDLNAALEA 310
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 187 bits (477), Expect = 4e-57
Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 39/298 (13%)
Query: 5 LFPGQGSQYVGMGQLLFDKFP---DIIEKSNNIL----GYSIKE-LCLKNSKNQLNKTEY 56
+F GQGSQ+ GMG+ L++ P + +++ + L G+S+ + L ++ L TE
Sbjct: 1 VFTGQGSQWAGMGRELYETEPVFREALDECDAALQPLLGWSLLDVLLGEDGAASLLDTEV 60
Query: 57 TQPALYIVNALSYRDHIKNTGEYA------------DFLVGHSLGEYNALESAGVFSFED 104
QPAL+ V + A D +VGHS GE A AGV S ED
Sbjct: 61 AQPALFAV-------------QVALARLLRSWGVRPDAVVGHSSGEIAAAYVAGVLSLED 107
Query: 105 GLRLVQKRSKLMSQV-LDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGP 163
RLV R +LM + GAM AV G++ +++ +L + + +A N+ + ++++G
Sbjct: 108 AARLVAARGRLMQALPGGGAMLAV-GLSEEEVEPLLAGVP-DRVSVAAVNSPSSVVLSGD 165
Query: 164 KNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFE 223
++ ++ E L V FHS +M+PI +F L P IP +S
Sbjct: 166 EDAVDELAARLEAEGIFARRLKVDHAFHSPHMEPILDEFRAALAGLTPRPPRIPFVSTVT 225
Query: 224 ALPYSIEKITNN--LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
++ + +L PV++ D++ LL + + F+E+GP VLT IK
Sbjct: 226 GTLIDGAELDDADYWVRNLREPVRFADAVRALLAEGGVTV-FLEVGPHPVLTGPIKQT 282
>gnl|CDD|215401 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase.
Length = 343
Score = 185 bits (471), Expect = 1e-55
Identities = 97/296 (32%), Positives = 152/296 (51%), Gaps = 25/296 (8%)
Query: 4 YLFPGQGSQYVGMGQLLFD--KFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPAL 61
+LFPGQG+Q VGMG+ + + +K++ ILGY + ++C+ K +L+ T +QPA+
Sbjct: 42 FLFPGQGAQAVGMGKEAAEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAI 101
Query: 62 YI-----VNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM 116
Y+ V L RD + + D G SLGEY AL AG SFEDGL+LV+ R + M
Sbjct: 102 YVASLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAM 161
Query: 117 ---SQVLDGAMAAVIGINYKKILNILKENN-----LNTIDIANYNTLNQIIIAGPKNDIN 168
+ M +VIG++ K+ + N + + IANY ++G K I+
Sbjct: 162 QAAADAGPSGMVSVIGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGID 221
Query: 169 NAQIFFEKNNAIY-IPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY 227
+ + A + L V+G FH+ +M+P L +P IPVISN +A P+
Sbjct: 222 AVEAKAKSFKARMTVRLAVAGAFHTSFMEPAVDALEAALAAVEIRTPRIPVISNVDAQPH 281
Query: 228 S----IEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
S I+KI L+ + +PV+W ++ LL K + E+GPG V+ +K +
Sbjct: 282 SDPATIKKI---LARQVTSPVQWETTVKTLLEKGLEKS--YELGPGKVIAGIVKRV 332
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit.
Members of this protein family are the epsilon subunit
of malonate decarboxylase. This subunit has
malonyl-CoA/dephospho-CoA acyltransferase activity.
Malonate decarboxylase may be a soluble enzyme, or
linked to membrane subunits and active as a sodium pump.
The epsilon subunit is closely related to the malonyl
CoA-acyl carrier protein (ACP) transacylase family
described by TIGR00128, but acts on an ACP subunit of
malonate decarboxylase that has an unusual coenzyme A
derivative as its prothetic group.
Length = 295
Score = 144 bits (366), Expect = 8e-41
Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 43/290 (14%)
Query: 5 LFPGQGSQYVGMGQLLFDKFPD------IIEKSNNILGYSIKEL----CLKNSKNQLNKT 54
LFPGQGSQ GM + PD ++ +++++LG +EL L ++++
Sbjct: 4 LFPGQGSQRAGM----LAELPDHPAVAAVLAEASDVLGIDPRELDDAEALASTRS----- 54
Query: 55 EYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
Q + ++R + + G+S+GEY A AGV +F+D LRLV R+
Sbjct: 55 --AQLCILAAGVAAWR-ALLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAA 111
Query: 115 LMSQVLDG--AMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQI 172
LM Q + G M AV+G++ + ++ ++ + +A N +Q++IAG + +
Sbjct: 112 LMDQAVPGGYGMLAVLGLDLAAVEALIAKHGVY---LAIINAPDQVVIAGSRAALRAVAE 168
Query: 173 FFEKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALP-YSIE 230
A L V P H+ + ++F L + +P +P +S +A
Sbjct: 169 LARAAGASRAKRLAVRVPSHTPLLAKAAEQFAEALAEIPLAAPRLPYLSGIDARLVRDAA 228
Query: 231 KITNNLSNHLINPVKWFD---SIYYLLNKSKNEME---FMEIGPGTVLTK 274
+I ++L+ + PV W D + Y E +E+GPG VLTK
Sbjct: 229 QIRDDLARQIATPVDWHDCMQAAY--------ERGARLVIELGPGDVLTK 270
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 132 bits (333), Expect = 8e-34
Identities = 87/284 (30%), Positives = 126/284 (44%), Gaps = 15/284 (5%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFPDI--------IEKSNNILGYSIKELCLKNSKNQLNKTE 55
++FPGQGSQ+ GMG+ L+ P + + + + L +
Sbjct: 529 FVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPF-LESID 587
Query: 56 YTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKL 115
+ QPAL+ V+ ++ G ++GHSLGE A +AGV S ED LR+V R +L
Sbjct: 588 FAQPALFAVSVALAA-LWRSWGVIPGAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRL 646
Query: 116 MSQV-LDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFF 174
M Q+ +GAM AV ++ +L + +A N+ Q++IAG I
Sbjct: 647 MQQLAGEGAMLAVELSLLAEVQELLALGRPQ-VPLAAVNSPQQVVIAGDPEAIAALIARL 705
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK-IT 233
+ L VS FHS M PI +F L D P IP+ISN
Sbjct: 706 QAQGVRARRLAVSHAFHSPLMDPILDEFAAALADLAPRPPQIPLISNVTGDLAGEPGGDA 765
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIK 277
HL PV++ D+I L F+E+GPG VLT+ IK
Sbjct: 766 QYWVQHLRQPVRFADAIAAALADGAR--TFIEVGPGPVLTESIK 807
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 125 bits (316), Expect = 2e-31
Identities = 87/314 (27%), Positives = 143/314 (45%), Gaps = 36/314 (11%)
Query: 5 LFPGQGSQYVGMGQLLFDKFPDI---IEKSNNILG-----------YSIKELCLKNSKNQ 50
LF GQGSQY+ MG+ L FP++ +++ Y I ++ K Q
Sbjct: 584 LFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQ 643
Query: 51 ---LNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLR 107
L T++ Q A+ ++ Y+ G AD GHS GE +AL +AGV S +D +
Sbjct: 644 EEALTNTQHAQSAIGTLSMGQYK-LFTQAGFKADMTAGHSFGELSALCAAGVISDDDYMM 702
Query: 108 LVQKRSKLMSQVLD----GAMAAVIGINYKKILNILKE--NNLNTIDIANYNTLNQIIIA 161
L R + M+ G M AVI + ++ + + IANYN+ Q++IA
Sbjct: 703 LAFSRGQAMAAPTGEADIGFMYAVI-LAVVGSPTVIANCIKDFEGVSIANYNSPTQLVIA 761
Query: 162 GPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISN 221
G I A ++ IPL VSG FH+ + K F+ + F++P +P+ SN
Sbjct: 762 GVSTQIQIAAKALKEKGFKAIPLPVSGAFHTPLVAHAQKPFSAAIDKAKFNTPLVPLYSN 821
Query: 222 FEALPYSIE--KITNNLSNHLINPVKW---FDSIYYLLNKSKNEMEFMEIGPGTVLTKFI 276
+S + I L NH++ V + +++Y + F+E GP +L K +
Sbjct: 822 GTGKLHSNDAAAIKKALKNHMLQSVHFSEQLEAMY-----AAGARVFVEFGPKNILQKLV 876
Query: 277 -KSIKNEYKKDCVI 289
++K++ + C I
Sbjct: 877 ENTLKDKENELCAI 890
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 116 bits (293), Expect = 5e-30
Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 52/315 (16%)
Query: 3 TYLFPGQGSQYVGMG-QLL--FDKFPDIIEKSNNIL----GYSIKELCLKNSKNQLNKTE 55
++F GQGSQ+ GMG LL F I + + G+S+ ++ N + L + +
Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60
Query: 56 YTQPALYIVN-ALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
QPAL+ + AL+ +++ G +VGHSLGE A AG S E+ +V RS+
Sbjct: 61 VVQPALFAMQIALA--ALLRSYGVTPAAVVGHSLGEIAAAVVAGALSLEEAALVVALRSR 118
Query: 115 LMSQV-LDGAMAAVIGINYKKILNILKENNLNTID---IANYNTLNQIIIAGPKNDINNA 170
LM Q+ G MAAV G+ +++ E D +A N+ +++AGP+ +
Sbjct: 119 LMRQLAGPGGMAAV-GLPAEEV-----EQLARWPDRVVVAIVNSPRSVVVAGPQEAL--- 169
Query: 171 QIFFEKNNAIYIP---LNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY 227
F E+ A + + V HS ++ I L D +P +P S P
Sbjct: 170 DEFVERVEARGVRARVIAVDYASHSPQVEAIGDALALALADIAPRTPRVPFYSTTSGDPS 229
Query: 228 SIEKITNNLS-----NHLINPVKW-------FDSIYYLLNKSKNEMEFMEIGPGTVLTK- 274
L +L NPV++ + Y + F+E+ P VL
Sbjct: 230 D----QRELDAEYWYRNLRNPVRFAEAVLAAAEQGYLV---------FVEVSPHPVLLAA 276
Query: 275 FIKSIKNEYKKDCVI 289
+++K+ KD +
Sbjct: 277 VEETLKSADGKDATL 291
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 35.3 bits (82), Expect = 0.058
Identities = 35/163 (21%), Positives = 53/163 (32%), Gaps = 22/163 (13%)
Query: 131 NYKKILNILKENNLNTIDIANYNTLNQIIIAG--PKNDINNAQIFFEKNNAIYIPLNVSG 188
+ +L IL ++ I N I P I N+ I N S
Sbjct: 928 ESQSLL-ILSSSDCFRIGPFNGKKSKYHNIKESNPLIPIRNSLGPLGTVLQIA---NFSS 983
Query: 189 PFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSI----EKITNN--LSNHLIN 242
+H I LD N+ + L Y + KI N SN ++N
Sbjct: 984 SYHLLTHNQILVT-KYLQLD------NLKQTFQVKVLKYYLIDENGKIYNPDPCSNIILN 1036
Query: 243 PVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKK 285
P F+ +Y L+ + E I G + + + KN K
Sbjct: 1037 P---FNLNWYFLHHNYCEETSTIISLGQFICENVCISKNGPHK 1076
>gnl|CDD|131863 TIGR02816, pfaB_fam, PfaB family protein. The protein PfaB is part
of four gene locus, similar to polyketide biosynthesis
systems, responsible for omega-3 polyunsaturated fatty
acid biosynthesis in several high pressure and/or
cold-adapted bacteria. The fairly permissive trusted
cutoff set for this model allows detection of homologs
encoded near homologs to other proteins of the locus:
PfaA, PfaC, and/or PfaD. The likely role in every case
is either polyunsaturated fatty acid or polyketide
biosynthesis.
Length = 538
Score = 32.4 bits (73), Expect = 0.43
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 29/142 (20%)
Query: 3 TYLFPGQGSQYVGMGQLLFDKFPDI---IEKSNNILGYSIKELCLKNSKNQLNKTEYTQP 59
+++PG G+ Y M FP + +E+ ++ K + + +
Sbjct: 184 AFVYPGVGTVYADMFNDFHQYFPALFAKLEREGDL-----KAMLQAEDIYGEDPKHAAEM 238
Query: 60 AL-----------YIVNALSYRDHIKNTGEYA---DFLVGHSLGEYNALESAGVFSFEDG 105
+L Y++ L E+A DF +G+S GE + S GV+
Sbjct: 239 SLGDLAIAGVGSSYLLTQLL-------CDEFAIKPDFALGYSKGEASMWASLGVWKNPHA 291
Query: 106 LRLVQKRSKLMSQVLDGAMAAV 127
L + + + + G + AV
Sbjct: 292 LIEKTQTDPIFTSAISGKLTAV 313
>gnl|CDD|238185 cd00304, RT_like, RT_like: Reverse transcriptase (RT, RNA-dependent
DNA polymerase)_like family. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile
elements, including retrotransposons, retroviruses,
group II introns, bacterial msDNAs, hepadnaviruses, and
caulimoviruses. These elements can be divided into two
major groups. One group contains retroviruses and DNA
viruses whose propagation involves an RNA intermediate.
They are grouped together with transposable elements
containing long terminal repeats (LTRs). The other
group, also called poly(A)-type retrotransposons,
contain fungal mitochondrial introns and transposable
elements that lack LTRs.
Length = 98
Score = 28.1 bits (63), Expect = 2.1
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 184 LNVSGPFHSRYMKPIYKKFNNFLLD--FVFHSPNIPVISNFEALPYSIEKITNNLSNHLI 241
+S + YM+ + LLD + + ++ VI+ E ++ L+ +
Sbjct: 16 SPLSPALANLYMEKLEAPILKQLLDITLIRYVDDLVVIAKSEQQAVKKRELEEFLARLGL 75
Query: 242 NPVKWF 247
N
Sbjct: 76 NLSDEK 81
>gnl|CDD|164492 CHL00086, apcA, allophycocyanin alpha subunit.
Length = 161
Score = 29.2 bits (65), Expect = 2.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 17 GQLLFDKFPDIIEKSNNILGYSIKELCLKN 46
GQ LF K PDI+ N G + CL++
Sbjct: 55 GQQLFQKRPDIVSPGGNAYGEEMTATCLRD 84
>gnl|CDD|133084 cd06226, M14_CPT_like, Peptidase M14 Carboxypeptidase T-like
subfamily. Peptidase M14-like domain of an
uncharacterized group of Peptidase M14 Carboxypeptidase
(CP) T (CPT)-like proteins. This group belongs to the
M14 family of metallocarboxypeptidases (MCPs). The M14
family are zinc-binding CPs which hydrolyze single,
C-terminal amino acids from polypeptide chains, and
have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. CPT exhibits dual-substrate specificity by
cleaving C-terminal hydrophobic amino acid residues and
C-terminal positively charged residues. However, CPT
does not belong to this CPT-like group.
Length = 293
Score = 29.3 bits (66), Expect = 2.9
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 29 EKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGE----YADFLV 84
+K GY I+ L L N N +P +I+ A+ R++ T E +A+ L+
Sbjct: 15 DKPGGPAGYDIRALKLTN--KATNSPTGPKPVFFIMGAIHAREYT--TAELVLRFAEDLL 70
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 29.5 bits (66), Expect = 3.2
Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 27/155 (17%)
Query: 130 INYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGP 189
+ +KIL ILK D + ++ A N + + ++ + S
Sbjct: 378 NDIEKILEILKRVQYTVDDQKDKLINKRLNCA-----RNWIRKYAPEDFKFSLR---SKF 429
Query: 190 FHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDS 249
+ ++ KK N L +F+ N V + L Y I K I P F +
Sbjct: 430 DNMEILEENSKKAINELAEFL--KKNFEVATEIHNLIYKISKENG------IEPALAFQA 481
Query: 250 IY-YLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEY 283
IY LL K G L FIK + +
Sbjct: 482 IYKILLGKEY----------GPKLGGFIKILGIDR 506
>gnl|CDD|201812 pfam01468, GA, GA module. The GA (protein G-related
Albumin-binding) module is composed of three alpha
helices. This module is found in a range of bacterial
cell surface proteins. The GA module from
Peptostreptococcus magnus pab shows a strong affinity
for albumin.
Length = 53
Score = 26.0 bits (58), Expect = 4.9
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 140 KENNLNTIDIANYNTLNQIIIAGPKNDINNAQ 171
K++ I+ N LN KN INNA
Sbjct: 11 KQDAKQAIN--NLTHLNNAQKDALKNQINNAT 40
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 27.7 bits (62), Expect = 8.3
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 288 VIKDDILEQSQEKKIEKWNNKYPI 311
++KD + QS + +E++ K P+
Sbjct: 34 LVKDGPVTQSLNEVLEEFKRKLPL 57
>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated.
Length = 258
Score = 27.9 bits (62), Expect = 8.5
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 268 PGTVLTKF-IKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIG 312
PG++ T + + E KD + E+KI +W +P+
Sbjct: 173 PGSIRTPLLEWAAELEVGKD--------PEHVERKIREWGEMHPMK 210
>gnl|CDD|214352 CHL00068, rpl20, ribosomal protein L20.
Length = 115
Score = 26.7 bits (60), Expect = 9.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 129 GINYKKILNILKENNLNT-------IDIANYNTLNQII 159
G++Y K ++ L +N + I I + N I
Sbjct: 73 GVSYSKFIHNLYKNQILLNRKILAQIAILDPNCFYTIS 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,405,530
Number of extensions: 1816863
Number of successful extensions: 1961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1916
Number of HSP's successfully gapped: 80
Length of query: 358
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 260
Effective length of database: 6,590,910
Effective search space: 1713636600
Effective search space used: 1713636600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)