RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2373
(358 letters)
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 428 bits (1102), Expect = e-150
Identities = 151/388 (38%), Positives = 232/388 (59%), Gaps = 32/388 (8%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
+ T++FPGQGSQ GMG LFD+F D+ +++ +LGYSI+ LC+ + +++L +T++TQPA
Sbjct: 6 LNTFMFPGQGSQAKGMGGALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPA 65
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
LY+VNAL+Y +++GE DFL GHSLGE+NAL +AG F FE GL+LV +R++LMSQ
Sbjct: 66 LYVVNALTYYAKCEDSGETPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAELMSQAR 125
Query: 121 DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
DGAMAA++ + ++I L E+ L IAN NT +Q++I+GP ++I A+ F+ +
Sbjct: 126 DGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVR 185
Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
Y+ LN SG FHS++M+P + F L F P IPVISN A PY +++ L+ +
Sbjct: 186 YLRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGRVSEGLAQQI 245
Query: 241 INPVKWFDSIYYLLNK---SKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQS 297
+PV+W +SI YLL +EF E+G G VLT+ + +I+ + +
Sbjct: 246 ASPVRWCESIRYLLALAAERGEAIEFTELGHGDVLTRLVHTIRRQTPAPAAAATSARARP 305
Query: 298 QEK----------------------------KIEKWNNKYPIGTKVKVKG-YKDILITKT 328
++ WN YP+GT+V+ + D+L T+T
Sbjct: 306 TPPGEPERPAQQTAAAPRASDSASASLGAAERVAAWNRDYPVGTRVRSSLIHDDVLETRT 365
Query: 329 KSMLLFENKAVIYIEGYNGYFLLDDVQP 356
+ +LF ++A +Y++GYNGYF L +V P
Sbjct: 366 PATVLFGHRAAVYMKGYNGYFDLAEVTP 393
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 364 bits (937), Expect = e-127
Identities = 129/283 (45%), Positives = 180/283 (63%), Gaps = 4/283 (1%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
MK Y+FPGQGSQ GMG+ LFD FP + +++ +LGYSI+ LC + +L++T++TQPA
Sbjct: 1 MKAYMFPGQGSQAKGMGRALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPA 60
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
LY+VNALSY + DFL GHSLGE++AL +AGVF FE GL LV+KR +LM
Sbjct: 61 LYVVNALSYL-KRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELMGDAR 119
Query: 121 DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
G MAAVIG++ +++ +L +N +DIAN N+ +Q++I+G K++I Q+ FE A
Sbjct: 120 GGGMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAK 179
Query: 181 -YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNH 239
Y L VS FHSR+M+P +F FL + F P IPVISN A P + I LS
Sbjct: 180 KYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTARPCKADGIRAALSEQ 239
Query: 240 LINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
+ +PV+W +SI YL+ + EF+E G G VLT I+ +
Sbjct: 240 IASPVRWCESIRYLMG--RGVEEFVECGHGIVLTGLYAQIRRD 280
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 293 bits (753), Expect = 3e-98
Identities = 96/284 (33%), Positives = 155/284 (54%), Gaps = 11/284 (3%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
+LF GQG+QYVGMG+ FD F ++ ++S+ LG ++ELC + + LNKTE+TQPA
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ-- 118
+ N + G + G SLGEY+AL +G +FEDG++LV+KR K M +
Sbjct: 66 IITTNMAILT-ALDKLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKFMQEAV 124
Query: 119 -VLDGAMAAVIGINYKKILNILKENNLNTI-DIANYNTLNQIIIAGPKNDINNAQIFFEK 176
G M AV+ + +++ I+++++ I + ANYN+ QI+I+G + A F ++
Sbjct: 125 AEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKE 184
Query: 177 NNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKITNN 235
I L VS PFH ++P +K + L + N V+SN + Y + I
Sbjct: 185 VGGRAIKLPVSAPFHCSMLQPAAEKLEDELNKISINKLNGIVMSNVKGEAYLEDDNIIEL 244
Query: 236 LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L++ + PV + + I ++ + F+EIGPG L+ F+K I
Sbjct: 245 LTSQVKKPVLFINDIEKMIESGVD--TFIEIGPGKALSGFVKKI 286
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 290 bits (746), Expect = 2e-97
Identities = 83/293 (28%), Positives = 149/293 (50%), Gaps = 17/293 (5%)
Query: 1 MKT-YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEY 56
M+ LFPGQGSQ +GMG+ ++ ++ E+++N L +K+ L ++ Y
Sbjct: 13 MQYALLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLF-EENELLKESAY 71
Query: 57 TQPALYIVNALSYR--DHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSK 114
TQPA+Y+V+ ++Y+ + N G F +GHSLGE +A+ +G FE L+L +R K
Sbjct: 72 TQPAIYLVSYIAYQLLNKQANGGLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGK 131
Query: 115 LMSQ---VLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQ 171
+M + D +M V+G++ + +L++ + + AN+N Q+++AG K+D+ +
Sbjct: 132 MMQEACANKDASMMVVLGVSEESLLSLCQRT--KNVWCANFNGGMQVVLAGVKDDLKALE 189
Query: 172 IFFEKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-I 229
++ A + L +S H +++P+ KF L + + +ISN Y
Sbjct: 190 PTLKEMGAKRVVFLEMSVASHCPFLEPMIFKFQELLEKSLKDKFHFEIISNATNEAYHNK 249
Query: 230 EKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
K LS L PV++ D + ++ F E+G G+VL K + N+
Sbjct: 250 AKAVELLSLQLTQPVRYQDCVKSNNDRVD---IFFELGCGSVLKGLNKRLSNK 299
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 287 bits (738), Expect = 2e-96
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 12/286 (4%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYT 57
M LFPGQGS VGMG+ L++ P ++++++ L + +L + + L TE
Sbjct: 1 MYAALFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQ 59
Query: 58 QPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMS 117
QPAL +YR ++ G+ GHSLGE+ A +AG ED LRLV+ R + M
Sbjct: 60 QPALLAAGYAAYRAFLEAGGKPPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQ 119
Query: 118 Q---VLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFF 174
+ V +GAMAAV+ + ++I L+ ++IAN N Q +I+G + + A
Sbjct: 120 EAVPVGEGAMAAVLKLPLEEIQKALEGL--EGVEIANLNAPEQTVISGRRQAVEEAAERL 177
Query: 175 EKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKIT 233
++ A + L VS PFHS M P K+ L P PV SN A P E+I
Sbjct: 178 KERRARVVFLPVSAPFHSSLMAPARKRLAEDLAQVPLRRPRFPVYSNVTARPEEDPERIR 237
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L + PV+W + + + + F+E G G VL +
Sbjct: 238 ALLLEQITAPVRWVEILRDMEARGVK--RFLEFGSGEVLKGLVLRT 281
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 287 bits (738), Expect = 3e-96
Identities = 99/285 (34%), Positives = 144/285 (50%), Gaps = 11/285 (3%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
++FPGQGSQ VGM + +P + +++ LGY + L + +LNKT TQPA
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 65
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ-- 118
L + YR + G+ + GHSLGEY+AL AGV F D +RLV+ R K M +
Sbjct: 66 LLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEAV 125
Query: 119 -VLDGAMAAVIGINYKKILNILKE-NNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
GAMAA+IG++ I +E + N+N+ Q++IAG K + A +
Sbjct: 126 PEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKA 185
Query: 177 NNAIY-IPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKITN 234
A +PL VS P H MKP K L F++P +PV++N + + + I +
Sbjct: 186 AGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRD 245
Query: 235 NLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L L NPV+W S+ Y+ + E+GPG VLT K I
Sbjct: 246 ALVRQLYNPVQWTKSVEYMAAQGVE--HLYEVGPGKVLTGLTKRI 288
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 287 bits (737), Expect = 4e-96
Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 13/290 (4%)
Query: 1 MKT--YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTE 55
++ ++FPGQGSQ++GM L + P + +++++ L Y + L + +L++T+
Sbjct: 5 PQSFAFVFPGQGSQHLGMLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQ 64
Query: 56 YTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKL 115
+TQPAL + +R G + GHSLGEY AL AG FE+ ++LV+KR +
Sbjct: 65 FTQPALLTADVAIFRCWEALGGPKPQVMAGHSLGEYAALVCAGALKFEEAVKLVEKRGQY 124
Query: 116 MSQ---VLDGAMAAVIGINYKKILNILKENNLNTI-DIANYNTLNQIIIAGPKNDINNAQ 171
M + V +GAM A+IG+N +I +I + L + AN N+ +Q +I+G ++ A
Sbjct: 125 MQEAVPVGEGAMGAIIGLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRAL 184
Query: 172 IFFEKNNAIY-IPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-I 229
+ A + VS P H M+P + + SP +PVI N + + ++
Sbjct: 185 NMAKTEGAKIAKRIPVSVPSHCPLMQPAADRLAQDIAKISIDSPKVPVIHNVDVVDHNEA 244
Query: 230 EKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
I L L+ PV+W ++I Y+ + FME GP L IK I
Sbjct: 245 NIIRGALIKQLVRPVRWVETIKYIEEQGIK--VFMECGPDNKLAGLIKRI 292
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 287 bits (736), Expect = 4e-96
Identities = 99/284 (34%), Positives = 156/284 (54%), Gaps = 12/284 (4%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
+LF GQG+QY+GMG+ +D++P + I++++ +LGY ++ L +++LN+T YTQPA
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDLRYLI-DTEEDKLNQTRYTQPA 64
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ-- 118
+ + YR ++ G D + G SLGEY+AL ++G FED + LV KR M +
Sbjct: 65 ILATSVAIYR-LLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYMEEAA 123
Query: 119 -VLDGAMAAVIGINYKKILNILKE-NNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
G M AV+ + I ++ + L + ANYNT QI+IAG ++ A ++
Sbjct: 124 PADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELLQE 183
Query: 177 NNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNN 235
A IPL VSGPFH+ ++P +K L F P++ N EA E I
Sbjct: 184 AGAKRLIPLKVSGPFHTSLLEPASQKLAETLAQVSFSDFTCPLVGNTEAAVMQKEDIAQL 243
Query: 236 LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L+ + PV++++SI + + F+EIGPG VL+ F+K I
Sbjct: 244 LTRQVKEPVRFYESIGVMQEAGIS--NFIEIGPGKVLSGFVKKI 285
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 286 bits (734), Expect = 1e-95
Identities = 91/285 (31%), Positives = 132/285 (46%), Gaps = 11/285 (3%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
++FPGQGSQ +GM L + P + +++ G + L + LN+TEYTQPA
Sbjct: 8 FVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYTQPA 67
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ-- 118
L +R G+ L GHSLGEY AL +AGV S DG LV+ R + M
Sbjct: 68 LLAAGVAVWRLWTAQRGQRPALLAGHSLGEYTALVAAGVLSLHDGAHLVRLRGQFMQAAA 127
Query: 119 -VLDGAMAAVIGINYKKILNILKE-NNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEK 176
GAMAAV+G +L + E + AN+N+ QI+I G ++ A +
Sbjct: 128 PAGVGAMAAVLGAEDAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLAE 187
Query: 177 NNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKITN 234
+ L VS P H+ M+ + + +H+P IPV+ N +A + I
Sbjct: 188 RGVRKAVKLAVSVPSHTPLMRDAANQLGEAMAGLSWHAPQIPVVQNVDARVHDGSAAIRQ 247
Query: 235 NLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
L L PV+W + L ++ E GPG VL+ IK I
Sbjct: 248 ALVEQLYLPVQWTGCVQALASQGIT--RIAECGPGKVLSGLIKRI 290
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 286 bits (734), Expect = 1e-95
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 15/292 (5%)
Query: 1 MKT-YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEY 56
M + FPGQGSQ +GMG++L ++F + E+ ++ L + ++ + + L T
Sbjct: 5 MGAAFTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTAN 64
Query: 57 TQPALYIVNALSYR---DHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRS 113
QPAL V+ R N + F+ GHSLGEY+AL +AG FS D RL++ R
Sbjct: 65 AQPALMAVSMAVIRVMEQLGLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRG 124
Query: 114 KLMSQ---VLDGAMAAVIGINYKKILNILKENNLNTI-DIANYNTLNQIIIAGPKNDINN 169
M V +G+MAA+IG++ K + I + + IAN N QI+I+G +
Sbjct: 125 NAMQAAVAVGEGSMAALIGLDEKDVEEICEIVAEEGLCQIANDNGGGQIVISGEAKAVET 184
Query: 170 AQIFFEKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS 228
A + A + L VS PFHS M+P N LL +P +P+I+N +P S
Sbjct: 185 AVEVASQKGAKRAVLLPVSAPFHSALMQPAANAMKNALLTVNKTAPIVPLIANVSVIPES 244
Query: 229 -IEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
E+I + L + V+W ++I ++ N EIG G VLT + I
Sbjct: 245 DPERIVSLLVQQVTGRVRWRETIEWISANGVN--TLFEIGSGKVLTGLARRI 294
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 285 bits (731), Expect = 3e-95
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 15/286 (5%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
+FPGQG+Q VGM Q LF+ +I+ + L + I E + + +L +TE TQPA
Sbjct: 14 IIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPA 73
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ-- 118
L ++ DF +GHSLGEY++L +A V SFED +++V+KR +LM+Q
Sbjct: 74 LLTHSSALLA---ALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAF 130
Query: 119 -VLDGAMAAVIGINYKKILNILKE--NNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFE 175
G+MAAV+G+++ K+ I K ++ I+ AN N QI+++G K I+ +
Sbjct: 131 PTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGK 190
Query: 176 KNNAIY-IPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKIT 233
A +PL VSGPFHS MK I + F++++ F + PV+ N A + E I
Sbjct: 191 SLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIK 250
Query: 234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
+N+ L +PV++ +S +L+++ + F+EIGPG VL+ IK I
Sbjct: 251 SNMVKQLYSPVQFINSTEWLIDQGVD--HFIEIGPGKVLSGLIKKI 294
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 283 bits (727), Expect = 2e-94
Identities = 91/289 (31%), Positives = 140/289 (48%), Gaps = 13/289 (4%)
Query: 1 MKT-YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEY 56
MK ++FPGQGSQ VGM D + ++++++ LG I +L ++LN T
Sbjct: 9 MKFAFVFPGQGSQSVGMLNAFAD-VAVVRETLDEASDALGQDIGKLIADGPADELNLTTN 67
Query: 57 TQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM 116
TQP + YR + G + GHSLGEY AL +AG +F D L LV+ R++ M
Sbjct: 68 TQPVMLTAAYACYRAWQQAGGAQPSIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAM 127
Query: 117 SQ---VLDGAMAAVIGINYKKILNILKE-NNLNTIDIANYNTLNQIIIAGPKNDINNAQI 172
V G MAA++G++ + + E + ++ N+N Q++IAG K I A
Sbjct: 128 QTAVPVGVGGMAAILGLDDDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACE 187
Query: 173 FFEKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IE 230
++ A +PL VS PFHS +KP K +L +P I V++N + S
Sbjct: 188 IAKEKGAKRALPLPVSAPFHSSLLKPASDKLREYLAGVDVKAPKISVVNNIDVAVVSDPA 247
Query: 231 KITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
I + L PV+W + + ++ + +E GPG VL K I
Sbjct: 248 AIKDALVRQAAGPVRWVECVQHIAREGVT--HVIECGPGKVLAGLTKRI 294
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 275 bits (706), Expect = 4e-91
Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 23/298 (7%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
LFPGQGSQ VGMG+ L + +P ++ + +LGY + EL L + L++T + QPA
Sbjct: 29 LLFPGQGSQVVGMGRGLLN-YPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPA 87
Query: 61 LYIVNALSYR---DHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM- 116
+++ + + + E G S+GE+ AL AG F +GL V+ R++ M
Sbjct: 88 IFVASLAAVEKLHHLQPSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAEAMQ 147
Query: 117 --SQVLDGAMAAVIGINYKKILNILKENNLNTID---------IANYNTLNQIIIAGPKN 165
S+ + M +V+G K E + ++NY + +I+G +
Sbjct: 148 EASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISGHQE 207
Query: 166 DINNAQIFFEKNNAI-YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEA 224
+ Q K + L VSG FH+R M+P + L P + V SN
Sbjct: 208 ALRFLQKNSSKFHFRRTRMLPVSGAFHTRLMEPAVEPLTQALKAVDIKKPLVSVYSNVHG 267
Query: 225 LPYS-IEKITNNLSNHLINPVKWFDSIYYLLNKSKNE--MEFMEIGPGTVLTKFIKSI 279
Y I L+ L++PVKW +++ + + K + E+GPG L +KS
Sbjct: 268 HRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAILKSC 325
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 270 bits (694), Expect = 1e-89
Identities = 70/294 (23%), Positives = 112/294 (38%), Gaps = 21/294 (7%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYT 57
M + PGQG+Q G P D + ++ +G + K +++ T
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLA-LPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVA 60
Query: 58 QPALYIVNALSYR--------DHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLV 109
QP L LS G + GHS+GE A AGV L LV
Sbjct: 61 QPLLVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLV 120
Query: 110 QKRSKLMSQ---VLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKND 166
++R M++ V + M+A++G + + + L+ L AN N QI+ AG
Sbjct: 121 RRRGLAMAEAAAVTETGMSALLGGDPEVSVAHLERLGL---TPANVNGAGQIVAAGTMEQ 177
Query: 167 INNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALP 226
+ + +PL V+G FH+R+M P K P + +SN +
Sbjct: 178 LAALNEDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRA 237
Query: 227 Y-SIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
S ++ + L + NPV+W + +E+ PG LT K
Sbjct: 238 VASGTEVLDRLVGQVANPVRWDLCMETFKELGVT--AIIEVCPGGTLTGLAKRA 289
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 269 bits (690), Expect = 4e-89
Identities = 70/288 (24%), Positives = 109/288 (37%), Gaps = 16/288 (5%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYT 57
M L PGQGSQ GM P D I + + L S ++ T
Sbjct: 2 MIALLAPGQGSQTEGMLSPWLQ-LPGAADQIAAWSKAADLDLARLGTTASTEEITDTAVA 60
Query: 58 QPALYIVNALSYR--DHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKL 115
QP + L+++ + GHS+GE A AGV + +D + L R
Sbjct: 61 QPLIVAATLLAHQELARRCVLAGKDVIVAGHSVGEIAAYAIAGVIAADDAVALAATRGAE 120
Query: 116 MSQ---VLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQI 172
M++ M+AV+G + ++L+ L++ +L AN N QI+ AG +
Sbjct: 121 MAKACATEPTGMSAVLGGDETEVLSRLEQLDL---VPANRNAAGQIVAAGRLTALEKL-A 176
Query: 173 FFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPY-SIEK 231
A L V+G FH+ +M P F + P ++SN + P S
Sbjct: 177 EDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTATLLSNRDGKPVTSAAA 236
Query: 232 ITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
+ L + L PV+W L + +E P L+ K
Sbjct: 237 AMDTLVSQLTQPVRWDLCTATLREHTVT--AIVEFPPAGTLSGIAKRE 282
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 185 bits (473), Expect = 1e-55
Identities = 57/285 (20%), Positives = 92/285 (32%), Gaps = 45/285 (15%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYI 63
LFPGQ + L D + + +K + T QPA+
Sbjct: 101 LLFPGQAAPVHADRGALGHLLGDADAGTGSDPDSGVKPA-------EPVDTAVAQPAIIA 153
Query: 64 VNALSYRDHIKNTGEYA------------DFLVGHSLGEYNALESAGVFSFEDGLRLVQK 111
A +GHSLGE AL AG +D L L +
Sbjct: 154 D-------------SLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARA 200
Query: 112 RSKLMSQVL---DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDIN 168
R + M M ++ + + +A N +++AG + +++
Sbjct: 201 RGEAM-SAATEAPSGMLSL-RADLAAARELAAGTGA---VVAVDNGERHVVVAGTRPELD 255
Query: 169 NAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS 228
PL VS FHS M P + + P PV S ++
Sbjct: 256 RVAEAARHAGIEATPLAVSHAFHSPLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWWA 315
Query: 229 IEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLT 273
E L L PV++ +++ L +E+GPG +L+
Sbjct: 316 DEDPVEVLVRQLTGPVRFREALGLLDADL-----LVEVGPGRMLS 355
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 193 bits (492), Expect = 4e-55
Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 32/224 (14%)
Query: 2 KTYLFPGQGSQYV--GMGQLLFDKFPDIIEKSNNI---LGYSIKELCLKNSKNQLNKTEY 56
T F G+ + + ++F+ D K+ I + ++ K L+ T++
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 57 TQPALYIVNALSYRDHIKNTG--EYADFLVGHSLGEYNALES-AGVFSFEDGLRLVQKRS 113
TQPAL ++ ++ D +K+ G GHSLGEY AL S A V S E + +V R
Sbjct: 1732 TQPALTLMEKAAFED-LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 114 KLMSQVL--------DGAMAAV------IGINYKKILNILKENNLNT---IDIANYNTLN 156
M + + M A+ + + + +++ T ++I NYN N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 157 -QIIIAGPKNDINNAQ--IFFEKNNAI-YIPLNVSGPFHSRYMK 196
Q + AG ++ + F K I I L S ++
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS--LSLEEVE 1892
Score = 120 bits (302), Expect = 6e-30
Identities = 71/385 (18%), Positives = 130/385 (33%), Gaps = 128/385 (33%)
Query: 2 KTY-LFPGQGS--QYVGMGQLLFDKFP----DIIEKSNNIL----------------GYS 38
+ +F GQG+ Y + L+ + D+I+ S L G +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 39 IKELCLKNSKNQLNKTEY-------------TQPALYIVNALSYRDHIKNTGEYADFLVG 85
I E L+N N + +Y Q A Y+V A + GE +L G
Sbjct: 215 ILEW-LENPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVTA---KLLGFTPGELRSYLKG 269
Query: 86 HSLGEYNALESAGVF-------SFED------------GLRLVQK-------RSKLMSQV 119
+ G L +A SF G+R + ++
Sbjct: 270 -ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDS 327
Query: 120 LDGA------MAAVIGINYKKILNILKENNLN-----TIDIANYNTLNQIIIAGPKNDIN 168
L+ M ++ + +++ + + + N + ++I+ N ++++GP +
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 169 NAQIFFEKNNAIY------IP------------LNVSGPFHSRYMKPIYKKFNNFLL--D 208
+ K A IP L V+ PFHS + P N L+ +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 209 FVFHSP--NIPVISNFEALPYSIEKITNNLSNHLIN-----PVKW----FDSIYYLLNKS 257
F++ IPV F+ + ++ ++S +++ PVKW ++L
Sbjct: 448 VSFNAKDIQIPVYDTFDG--SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--- 502
Query: 258 KNEMEFMEIGPGTV-----LTKFIK 277
+F GPG LT K
Sbjct: 503 ----DF---GPGGASGLGVLTHRNK 520
Score = 30.8 bits (69), Expect = 0.92
Identities = 23/114 (20%), Positives = 33/114 (28%), Gaps = 36/114 (31%)
Query: 111 KRSKLMSQVLDGA---MAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDI 167
K SK V + A G + IL+I+ N P N
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFS---ILDIVINN--------------------PVNLT 1673
Query: 168 NNAQIFF--EKNNAI---YIPLNV-SGPFHSRYMKPIYKKFNNFLLDFVFHSPN 215
I F EK I Y + + + I+K+ N + F S
Sbjct: 1674 ----IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 166 bits (421), Expect = 2e-45
Identities = 63/295 (21%), Positives = 122/295 (41%), Gaps = 37/295 (12%)
Query: 4 YLFPGQGSQYVGMG-QLL-FDKFPDIIEKSNNIL---GYSIKELCLKNSKNQLNKTEYTQ 58
++ G G+Q+ GMG L+ D+F D I +S+ L G + +L L + L+ +
Sbjct: 494 FICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSF 553
Query: 59 PALYIVN-AL-----SYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKR 112
+L + AL S G D ++GHSLGE + G + E+ + R
Sbjct: 554 VSLTSIQIALIDLLTSL-------GLQPDGIIGHSLGEVACGYADGCLTQEEAVLSSYWR 606
Query: 113 SKLMSQVL--DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNA 170
+ + GAMAAV G+++++ I A +N+ + + I+GP+ ++
Sbjct: 607 GYCIKEANVLPGAMAAV-GLSWEECKQRCPPG----IVPACHNSKDTVTISGPQAAMSEF 661
Query: 171 QIFFEKNNAIYIPLNVSG-PFHSRYMKPIYKKFNNFLLDFVFH--SPNIPVISNFEALPY 227
++ + + G FHS +M+ I L + + +S
Sbjct: 662 LQQLKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQ 721
Query: 228 SIEKITNNLS-----NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIK 277
+ S N+L++PV + +++ ++ + +EI P +L +K
Sbjct: 722 WQGSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAV----VVEIAPHALLQAVLK 772
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 160 bits (406), Expect = 1e-43
Identities = 57/367 (15%), Positives = 105/367 (28%), Gaps = 95/367 (25%)
Query: 4 YLFPGQGSQYVGMGQL--LFDKFP----DIIEKSNNIL---------------GYSIKEL 42
+F GQG+ +L ++ +P D+I +L G I +
Sbjct: 153 SIFGGQGNIEEYFDELREIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYPKGLDILQW 212
Query: 43 CL----KNSKNQLNKTEYTQPALYIVNALSYRDHIKNTG-------EYADFLVGHSLGEY 91
+ + L + P + +V Y K G E GHS G
Sbjct: 213 LHNPESQPDTDYLVSAPVSFPLIGLVQLAHYMITCKTLGREPGELLERFSGTTGHSQGIV 272
Query: 92 NALESAGVFSFEDGLRLVQKRSKLM----------------------SQVLDG-----AM 124
A A ++++ ++ +L+ V +G M
Sbjct: 273 VAAAIATARTWDEFATAAKRAVELLFWIGLRSQQAYPRTSLAPSTLQDSVENGEGTPTPM 332
Query: 125 AAVIGINYKKILNILKENNLNT-----IDIANYNTLNQIIIAGPKNDINNAQIFFEKNNA 179
++ + + + N + I I+ N+ ++ GP + + K A
Sbjct: 333 LSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFVVTGPPISLYGLNLRLRKVKA 392
Query: 180 ------------------IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSP--NIPVI 219
+ L ++ PFHS Y+ + + D + IPV
Sbjct: 393 PTGLDQNRIPFTQRKARFVNRFLPITAPFHSPYLAGAHAHILGDVDDMKIPASSLVIPVY 452
Query: 220 SNFEALP---YSIEKITNNL-SNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTV--LT 273
E I L +PV W + + ++ GPG V +
Sbjct: 453 DTKTGQDLRELGDEDIIPELVRMITYDPVNWETAT-----VFPDATHIVDFGPGGVSGIG 507
Query: 274 KFIKSIK 280
K
Sbjct: 508 VLTNRNK 514
Score = 159 bits (403), Expect = 3e-43
Identities = 49/292 (16%), Positives = 91/292 (31%), Gaps = 52/292 (17%)
Query: 13 YVGMGQLLFDKFPDIIEKSN-NILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRD 71
Y+ M + I + + + ++ L+ T++TQPAL ++ S+ D
Sbjct: 1743 YMSMTFETVNADGSIKTEKIFKEVDENSTSYTYRSPSGLLSATQFTQPALTLMEKASFED 1802
Query: 72 HIKNTGEY--ADFLVGHSLGEYNALES-AGVFSFEDGLRLVQKRSKLMSQ--------VL 120
+++ G GHSLGEY+AL + A V E + +V R M
Sbjct: 1803 -MRSKGLVQRDSTFAGHSLGEYSALVALADVMPIESLVSVVFYRGLTMQVAVERDEQGRS 1861
Query: 121 DGAMAAVIGINYKKILN---------ILKENNLNTIDIANYNTLN-QIIIAGPKNDINNA 170
+ AM AV + E ++I NYN N Q + AG ++
Sbjct: 1862 NYAMCAVNPSRISPTFTEQALQYVVENIAEVTGWLLEIVNYNVANMQYVAAGDLRALDTL 1921
Query: 171 QIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIE 230
+++ S ++ + + + + P
Sbjct: 1922 ANVLNILKMQ--KIDIQALMQSMSLEDVRAHLVEIIQECRKQTEAKP------------- 1966
Query: 231 KITNNLSNHLINPVKWFDSIYYLLNK---SKNEMEFMEIGPGTVLTKFIKSI 279
PV+ + + F+ G + +K I
Sbjct: 1967 -----------QPVQLERGFATIPLRGIDVPFHSTFLRSGVKPFRSFLLKKI 2007
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 158 bits (401), Expect = 6e-43
Identities = 63/331 (19%), Positives = 117/331 (35%), Gaps = 35/331 (10%)
Query: 2 KTYLFPGQGSQYVGMG--QLLFDKFPD---IIEKSNNILGYSIKELCLKNSKNQLNKTEY 56
T F G+ + + ++F+ D EK + ++ K L+ T++
Sbjct: 1717 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1776
Query: 57 TQPALYIVNALSYRDHIKNTG--EYADFLVGHSLGEYNALES-AGVFSFEDGLRLVQKRS 113
TQPAL ++ ++ D +K+ G GHSLGEY AL S A V S E + +V R
Sbjct: 1777 TQPALTLMEKAAFED-LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1835
Query: 114 KLM--------SQVLDGAMAAV------IGINYKKILNILKENNLNT---IDIANYNTLN 156
M + M A+ + + + +++ T ++I NYN N
Sbjct: 1836 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1895
Query: 157 -QIIIAGPKNDINNAQIFFEKNNAIYI-PLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSP 214
Q + AG ++ I + + ++ + + P
Sbjct: 1896 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLFEIIDEASKKSAVKP 1955
Query: 215 NIPVISN-FEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLT 273
+ F +P + S +L+N VK F S +L E + G +
Sbjct: 1956 RPLKLERGFACIPLVGISV-PFHSTYLMNGVKPFKS--FLKKNIIKENVKVARLAGKYIP 2012
Query: 274 KFIKSIKNEYKKDCVIKDDILEQSQEKKIEK 304
K+ D+ + + + I++
Sbjct: 2013 NLTAKPFQVTKE---YFQDVYDLTGSEPIKE 2040
Score = 147 bits (373), Expect = 3e-39
Identities = 62/368 (16%), Positives = 114/368 (30%), Gaps = 98/368 (26%)
Query: 5 LFPGQGSQYVGMGQL--LFDKFP----DIIEKSNNIL------GYSIKELCLKN------ 46
+F GQG+ +L L+ + D+I+ S L +++ +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 47 --------SKNQLNKTEYTQPALYIVNALSYRDHIKNTG-------EYADFLVGHSLGEY 91
K+ L + P + ++ Y K G Y GHS G
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 92 NALESAGVFSFEDGLRLVQK---------------------RSKLMSQVLD------GAM 124
A+ A S+E V+K ++ L+ M
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 125 AAVIGINYKKILNILKENNLNT-----IDIANYNTLNQIIIAGPKNDINNAQIFFEKNNA 179
++ + +++ + + + N + ++I+ N ++++GP + + K A
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 180 ------------------IYIPLNVSGPFHSRYMKPIYKKFNNFL----LDFVFHSPNIP 217
L V+ PFHS + P N L + F IP
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 218 VISNFEA--LPYSIEKITNNLSNHLI-NPVKWFDSIYYLLNKSKNEMEFMEIGPGTV--L 272
V F+ L I+ + + +I PVKW + ++ GPG L
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT------QFKATHILDFGPGGASGL 512
Query: 273 TKFIKSIK 280
K
Sbjct: 513 GVLTHRNK 520
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 152 bits (387), Expect = 5e-41
Identities = 63/297 (21%), Positives = 118/297 (39%), Gaps = 41/297 (13%)
Query: 4 YLFPGQGSQYVGMGQLLFDK--FPDIIEKSNNIL---GYSIKELCLKNSKNQLNKTEYTQ 58
++ G G+Q+ GMG L F D I +S+ + G + +L L ++ + ++
Sbjct: 496 FICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSF 555
Query: 59 PALYIVN-AL-----SYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKR 112
+L + L G D +VGHSLGE + G S E+ + R
Sbjct: 556 VSLTAIQIGLIDLLSCM-------GLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWR 608
Query: 113 SKLMSQVL--DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNA 170
+ + + GAMAAV G+++++ + A +N+ + + I+GP+ +
Sbjct: 609 GQCIKEAHLPPGAMAAV-GLSWEECKQRCPPG----VVPACHNSKDTVTISGPQAPVFEF 663
Query: 171 QIFFEKNNAIYIPLNVSG-PFHSRYMKPIYKKFNNFL----LDFVFHSPNIPVISNFEAL 225
K + G FHS +M+ I L + S S EA
Sbjct: 664 VEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQ 723
Query: 226 PYSIEKITNNLS-----NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIK 277
+ S N+L++PV + ++++++ + +EI P +L +K
Sbjct: 724 W--HSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV----VLEIAPHALLQAVLK 774
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 139 bits (352), Expect = 2e-36
Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 31/288 (10%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP-------DIIEKSNNILGYSIKE-LCLKNSKNQLNKTE 55
+LFPGQGSQ+ GMG L P E + + + + L L++ +
Sbjct: 536 FLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPGLDRVD 595
Query: 56 YTQPALYIVN-ALS--YRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKR 112
QP L+ V +L+ +R + G +VGHS GE A AG + ED +LV R
Sbjct: 596 VVQPVLFAVMVSLAELWRSY----GVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVVGR 651
Query: 113 SKLMSQVL--DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNA 170
S+LM + L +G MAAV + + L+ + + +A N ++++G +
Sbjct: 652 SRLM-RSLSGEGGMAAV-ALGEAAVRERLRPWQ-DRLSVAAVNGPRSVVVSGEPGALRAF 708
Query: 171 QIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIE 230
++V HS ++ + ++ D + S E+
Sbjct: 709 SEDCAAEGIRVRDIDVDYASHSPQIERVREELLETTGDIAPRPARVTFHSTVESRSMD-- 766
Query: 231 KITNNLS-----NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLT 273
L +L V++ D++ L + F+E+ P V+
Sbjct: 767 --GTELDARYWYRNLRETVRFADAVTRLAESGYD--AFIEVSPHPVVV 810
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 138 bits (351), Expect = 3e-36
Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 32/287 (11%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP-------DIIEKSNNILGYSIKELCLKNSKNQLNKTEY 56
+FPGQG+Q+ GM + L + D + +S+ +L L ++ L++ +
Sbjct: 555 MVFPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDL-LSGAR-PLDRVDV 612
Query: 57 TQPALYIVN-ALS--YRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRS 113
QPAL+ V +L+ +R H G +VGHS GE A AG + ED +LV RS
Sbjct: 613 VQPALFAVMVSLAALWRSH----GVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVAVRS 668
Query: 114 KLMSQVL--DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQ 171
+++ + L G MA+ G+ ++ + + IA+ N +++AG ++
Sbjct: 669 RVL-RRLGGQGGMASF-GLGTEQAAERIGRFA-GALSIASVNGPRSVVVAGESGPLDELI 725
Query: 172 IFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK 231
E + V HS ++ + ++ L S ++ + S P
Sbjct: 726 AECEAEAHKARRIPVDYASHSPQVESLREELLTELAGISPVSADVALYSTTTGQPID--- 782
Query: 232 ITNNLS-----NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLT 273
T + +L V++ D+ L F+E+ P VLT
Sbjct: 783 -TATMDTAYWYANLREQVRFQDATRQLA--EAGFDAFVEVSPHPVLT 826
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 61/448 (13%), Positives = 132/448 (29%), Gaps = 148/448 (33%)
Query: 19 LLFDKFPDIIEKSNNILGYSIKELCLKNSK---NQLNKTEYTQPALYIVNALSYRDHIKN 75
LF + K ++ ++E+ N K + + KTE QP++ + RD + N
Sbjct: 66 RLFWTL---LSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYN 121
Query: 76 TGE-YADFLVGHSLGEYNALESA------------------------------------- 97
+ +A + V L Y L A
Sbjct: 122 DNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 98 --GVF--------SFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTI 147
+F S E L ++QK + + + N K ++ ++ +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 148 DIANY-NTLNQIIIAGPKNDINNAQIF--FE---------KNNAIYIPLNVSGPFHSRYM 195
Y N L +++ ++ NA+ + F + + L+ + H +
Sbjct: 239 KSKPYENCL--LVL----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-L 291
Query: 196 KPIYKKFN-----NFLLDFVFHSPN-IPVISNFEAL---PYSIEKITNNLSNHLINPVKW 246
+ LL ++ P +P E L P + I ++ + W
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDG---LATW 344
Query: 247 FDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIK-NEYKK---DCVI--KD--------- 291
+ + +K +E + ++ EY+K +
Sbjct: 345 DNWKHVNCDKLTTIIE-----------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 292 ------------DILEQSQEKK-IEKWNNKYPIG-------TKVKVKGYKDI---LITKT 328
++ + + +EK + I KVK++ + ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 329 KSMLLFENKAVI------YIEGYNGYFL 350
F++ +I Y + G+ L
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Score = 39.8 bits (92), Expect = 0.001
Identities = 37/266 (13%), Positives = 89/266 (33%), Gaps = 71/266 (26%)
Query: 132 YKKILNILKEN---NLNTIDIANYNTLNQII-------IAGPKNDINNAQIFF----EKN 177
YK IL++ ++ N + D+ + I+ I K+ ++ F K
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 178 NAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNN-- 235
+ ++++ + + FL+ + P + +++ N+
Sbjct: 76 EEMV----------QKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQ 124
Query: 236 -LSNHLINPVKWFDSIYYLLNKSKNE-------MEFMEIGPG-TVLT-KFIKSIKNEYKK 285
+ + ++ ++ + + L + + + +G G T + S K + K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLSYKVQCKM 180
Query: 286 D----------CVIKDDILEQSQE--KKIEK---WNNKYPIGTKVKVKGYKDILITKTKS 330
D C + +LE Q+ +I+ + + K+++ + L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-----R 235
Query: 331 MLLFENKAVIYIEGY-NGYFLLDDVQ 355
LL Y N +L +VQ
Sbjct: 236 RLLKSKP-------YENCLLVLLNVQ 254
Score = 35.6 bits (81), Expect = 0.030
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 36/131 (27%)
Query: 4 YLFPGQGSQYVG--MGQL----LFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYT 57
Y + ++G + + F + L + E +++ N +
Sbjct: 472 YFY-----SHIGHHLKNIEHPERMTLFRMVF------LDFRFLEQKIRHDSTAWNASGSI 520
Query: 58 QPALYIVNALSYRDHI-KNTGEYA-------DFLVGHS----LGEYN-----ALESAGVF 100
L + Y+ +I N +Y DFL +Y AL +
Sbjct: 521 LNTLQQLK--FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 101 SFEDGLRLVQK 111
FE+ + VQ+
Sbjct: 579 IFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.038
Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 74/235 (31%)
Query: 18 QLLFDKFPDIIEKSNNILG-------Y------------------------------SIK 40
+ DK IIE S N+L + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 41 ELCLKNS--KNQLNKTEYTQPALY----------------IVNALSYRDHIKNTGEYADF 82
K S + Q ++ + P++Y IV+ + + +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 83 L-------VGHSLGEYNALESAGVFS--FEDGLRLVQK--RSKLMSQVLDGAMAAVIG-- 129
L +GH L E +F F D R +++ R + G++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 130 INYKK-ILNILKENNLNTIDIANY-NTLNQIIIAGPKNDINNAQI-FFEKNNAIY 181
YK I + + I ++ + + +I D+ +I ++ AI+
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIF 580
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.068
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 48 KNQLNKTE-----Y---TQPALYIVNA 66
K L K + Y + PAL I A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI-KA 44
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 31.3 bits (70), Expect = 0.47
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 218 VISNFEALPYSIEKITNNLSNHLINPVK-WFDSIYYLLNKSKNEMEFMEIGPGTVLTKFI 276
+ S E L + + +L++ ++ + L + + ++ ++ I
Sbjct: 77 ITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDI 136
Query: 277 KSIKNEYKKDCV----IKDDILEQSQEKKIEKWNNKY 309
+ +K++Y+ K E S++K +K +KY
Sbjct: 137 EKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKY 173
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.3
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 276 IKSIKNEYKKDCVIKD-------DILEQSQEKKIEKWNNKY 309
I+ + E +K D + +K +E+WN +
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 27.8 bits (62), Expect = 1.6
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 126 AVIGINYKKILNILKENNLNTIDIANYNT-LNQIIIAGPKNDINNAQ 171
++IG + I +I++E I + + ++I GP +D+ A+
Sbjct: 30 SLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAK 76
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 27.4 bits (61), Expect = 2.6
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 106 LRLVQKRSKLMSQVLD---GAMAAVIGINYKKILNILKENNLNTIDIANYNTL--NQIII 160
R+V + +++S+ + A +IG K I I+ E ++ I N + +
Sbjct: 7 GRIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVD-IRFPQSGAPDPNCVTV 65
Query: 161 AGPKNDINNA 170
G ++ A
Sbjct: 66 TGLPENVEEA 75
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 28.3 bits (64), Expect = 4.2
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 83 LVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGA 123
G + ++ +L+ AG +F D V S +M + L+ A
Sbjct: 176 RKGKEIADFYSLKEAGCVAFTDDGSPVMD-SSVMRKALELA 215
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 27.9 bits (63), Expect = 6.2
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 83 LVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGA 123
G + ++ L+ G F+F D VQ + +M + A
Sbjct: 129 QAGSEMTDFETLKELGAFAFTDDGVGVQD-ASMMLAAMKRA 168
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 27.5 bits (62), Expect = 6.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 83 LVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGA 123
+G L ++ AL G F+F D VQ + +M + + A
Sbjct: 128 QLGKELVDFPALVKEGAFAFTDDGVGVQT-ASMMYEGMIEA 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,387,933
Number of extensions: 321925
Number of successful extensions: 944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 68
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)