RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2374
(358 letters)
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 101 bits (253), Expect = 1e-25
Identities = 43/282 (15%), Positives = 75/282 (26%), Gaps = 59/282 (20%)
Query: 1 MKTYLFPGQGSQYVGMGQLLFDKFP--DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
M + PGQG+Q G D + ++ +G + K +++ T Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 59 PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
P G AL + + G ++
Sbjct: 62 P--------------------LLVAAGILS--AAALGTQTSVADATGPGF---TPGAVAG 96
Query: 119 VLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNN 178
G + A + A +
Sbjct: 97 HSVGEITAAV--------------------FAGVLDDT---------AALSLVRRRGLAM 127
Query: 179 AIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK-ITNNLS 237
A + V+G FH+R+M P K P + +SN + + + + L
Sbjct: 128 AEAAAVTVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEVLDRLV 187
Query: 238 NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
+ NPV+W + +E+ PG LT K
Sbjct: 188 GQVANPVRWDLCMETFKEL--GVTAIIEVCPGGTLTGLAKRA 227
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 99.1 bits (246), Expect = 7e-25
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 4 YLFPGQGSQYVGMGQLLFDKFP---DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
++FPGQGSQ VGM + +P + +++ LGY + L + +LNKT TQPA
Sbjct: 4 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 63
Query: 61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLM 116
L + YR + G+ + GHSLGEY+AL AGV F D +RLV+ R K M
Sbjct: 64 LLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFM 119
Score = 80.3 bits (197), Expect = 4e-18
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 189 PFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKITNNLSNHLINPVKWF 247
P H MKP K L F++P +PV++N + + + I + L L NPV+W
Sbjct: 127 PSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWT 186
Query: 248 DSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
S+ Y+ + E+GPG VLT K I
Sbjct: 187 KSVEYMAA--QGVEHLYEVGPGKVLTGLTKRI 216
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
562]}
Length = 70
Score = 57.6 bits (139), Expect = 1e-11
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 122 GAMAAVIGINYKKILNILKENNLNT-IDIANYNTLNQIIIAGPKNDINNAQIFFEKNNA- 179
GAMAA+IG++ I +E + N+N+ Q++IAG K + A + A
Sbjct: 3 GAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGAK 62
Query: 180 IYIPLNVS 187
+PL VS
Sbjct: 63 RALPLPVS 70
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 54.4 bits (131), Expect = 1e-10
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 121 DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
+ M+A++G + + + L+ L AN N QI+ AG + +
Sbjct: 1 ETGMSALLGGDPEVSVAHLERLGL---TPANVNGAGQIVAAGTMEQLAALNEDKPEGVRK 57
Query: 181 YIPL 184
+PL
Sbjct: 58 VVPL 61
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 28.0 bits (61), Expect = 1.6
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 258 KNEMEFMEIGPGT-VLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPI 311
+ +E+GPGT +T + ++ K D L K+++ +
Sbjct: 20 RPTDVVLEVGPGTGNMTVKL--LEKAKKVVACELDPRLVAELHKRVQGTPVASKL 72
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal
domains {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 79
Score = 25.8 bits (57), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 122 GAMAAVIGINYKKILNILKENNLNTIDIANYN 153
A A IG +++ N++ E + IDI +Y+
Sbjct: 47 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD 78
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 26.1 bits (57), Expect = 5.4
Identities = 11/128 (8%), Positives = 42/128 (32%), Gaps = 9/128 (7%)
Query: 205 FLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFM 264
++ + + + + ++ P + L+ + E
Sbjct: 66 LVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEG 125
Query: 265 EIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDIL 324
+ + + + +K K+ + +D +++ E +I+K +++ + +
Sbjct: 126 RVAIRNIRREALDKLKK-LAKELHLSEDETKRA-EAEIQKITDEF-------IAKADQLA 176
Query: 325 ITKTKSML 332
K + +L
Sbjct: 177 EKKEQEIL 184
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal
domains {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 24.6 bits (54), Expect = 6.5
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 107 RLVQKRSKLMSQVLDG---AMAAVIGINYKKILNILKENNLNTIDIANYN 153
R R+K+ D + A IG +I ILKE +D+ ++
Sbjct: 29 REPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKWS 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,339,892
Number of extensions: 64929
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 21
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)