BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2375
(929 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/843 (55%), Positives = 624/843 (74%), Gaps = 10/843 (1%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTA-YINTISNN 65
D D +ET++W+ A++SVI+ EG RA YLI +++ + G+NV + YINTI
Sbjct: 7 DVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVE 66
Query: 66 FDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR 125
++PGN+++E ++S IRWNA+ V+RA+K D LGGH++SF S A I ++ FNHF+R
Sbjct: 67 EQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR 126
Query: 126 APTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKF 185
A GGDL+Y QGH +PGVYARAFLEGRLT+EQ+ NFRQEV G GLSSYPHPKLMP+F
Sbjct: 127 ARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEF 186
Query: 186 WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
WQFPTVSMGLGP+ AI+QA+FLKYL R + +T + ++ GDGEMDEPES I++A
Sbjct: 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIAT 246
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQ 305
REKLDNL+ ++NCNLQRLDGPV GN KII ELE F G GWNVIKV+W S WD+LL+ D
Sbjct: 247 REKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDT 306
Query: 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDL 365
+G L ++M +T+DG+YQ ++SK+ ++R++FFGK+P+ ++ + +DE IW L GGHD
Sbjct: 307 SGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDP 366
Query: 366 RKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKL 425
+KIY+AFK AQ+ K K TV+L +IKGYG+G E +N AH +KK++ G++ IRD +
Sbjct: 367 KKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNV 426
Query: 426 PIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILE 485
P+ D+++ +P+ + S E YL R+KL GYLP R+ EKL +P L+ F +LE
Sbjct: 427 PVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLE 486
Query: 486 PTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQL 545
++ISTT A+VR LN +L++K+I +R+VPI+ DE+RTFGMEGLFRQIGI+S GQ
Sbjct: 487 E--QSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQ 544
Query: 546 YDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGL 605
Y P D++QV YY+E++ GQILQEGINE G SW+AAATSYST+N MIPF+ +YSMFG
Sbjct: 545 YTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGF 604
Query: 606 QRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAH 665
QRIGDL W AGD +ARGFLIGGTSGRTT+NGEGLQHEDGHSH+ + TIPNCI YDP +A+
Sbjct: 605 QRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAY 664
Query: 666 EVAIIIHHGLHCMISN-QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKS 724
EVA+I+H GL M QE+V+YYIT +NENY P + +G E+GI KG+Y L+ E S
Sbjct: 665 EVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLE--TIEGS 722
Query: 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKK 783
K KVQL+GSG+ILR + A++IL +++ + S V+S TSFT LARDGQ+ ERWNMLHP +
Sbjct: 723 KGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLET 782
Query: 784 QKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRD 843
+V YI + + + P + +TDYM+LFAEQVR ++P Y+VLGTDGFG SD+R+ LR
Sbjct: 783 PRVPYIAQVMNDA--PAVASTDYMKLFAEQVRTYVPADD-YRVLGTDGFGRSDSRENLRH 839
Query: 844 FFE 846
FE
Sbjct: 840 HFE 842
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/843 (55%), Positives = 623/843 (73%), Gaps = 10/843 (1%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTA-YINTISNN 65
D D +ET++W+ A++SVI+ EG RA YLI +++ + G+NV + YINTI
Sbjct: 7 DVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVE 66
Query: 66 FDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR 125
++PGN+++E ++S IRWNA+ V+RA+K D LGGH++SF S A I ++ FNHF+R
Sbjct: 67 EQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR 126
Query: 126 APTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKF 185
A GGDL+Y QGH +PGVYARAFLEGRLT+EQ+ NFRQEV G GLSSYPHPKLMP+F
Sbjct: 127 ARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEF 186
Query: 186 WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
WQFPTVSMGLGP+ AI+QA+FLKYL R + +T + ++ GDGEMD PES I++A
Sbjct: 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDAPESKGAITIAT 246
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQ 305
REKLDNL+ ++NCNLQRLDGPV GN KII ELE F G GWNVIKV+W S WD+LL+ D
Sbjct: 247 REKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDT 306
Query: 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDL 365
+G L ++M +T+DG+YQ ++SK+ ++R++FFGK+P+ ++ + +DE IW L GGHD
Sbjct: 307 SGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDP 366
Query: 366 RKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKL 425
+KIY+AFK AQ+ K K TV+L +IKGYG+G E +N AH +KK++ G++ IRD +
Sbjct: 367 KKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNV 426
Query: 426 PIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILE 485
P+ D+++ +P+ + S E YL R+KL GYLP R+ EKL +P L+ F +LE
Sbjct: 427 PVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLE 486
Query: 486 PTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQL 545
++ISTT A+VR LN +L++K+I +R+VPI+ DE+RTFGMEGLFRQIGI+S GQ
Sbjct: 487 E--QSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQ 544
Query: 546 YDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGL 605
Y P D++QV YY+E++ GQILQEGINE G SW+AAATSYST+N MIPF+ +YSMFG
Sbjct: 545 YTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGF 604
Query: 606 QRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAH 665
QRIGDL W AGD +ARGFLIGGTSGRTT+NGEGLQHEDGHSH+ + TIPNCI YDP +A+
Sbjct: 605 QRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAY 664
Query: 666 EVAIIIHHGLHCMISN-QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKS 724
EVA+I+H GL M QE+V+YYIT +NENY P + +G E+GI KG+Y L+ E S
Sbjct: 665 EVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLE--TIEGS 722
Query: 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKK 783
K KVQL+GSG+ILR + A++IL +++ + S V+S TSFT LARDGQ+ ERWNMLHP +
Sbjct: 723 KGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLET 782
Query: 784 QKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRD 843
+V YI + + + P + +TDYM+LFAEQVR ++P Y+VLGTDGFG SD+R+ LR
Sbjct: 783 PRVPYIAQVMNDA--PAVASTDYMKLFAEQVRTYVPADD-YRVLGTDGFGRSDSRENLRH 839
Query: 844 FFE 846
FE
Sbjct: 840 HFE 842
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/843 (55%), Positives = 623/843 (73%), Gaps = 10/843 (1%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTA-YINTISNN 65
D D +ET++W+ A++SVI+ EG RA YLI +++ + G+NV + YINTI
Sbjct: 7 DVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVE 66
Query: 66 FDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR 125
++PGN+++E ++S IRWNA+ V+RA+K D LGGH++SF S A I ++ FNHF+R
Sbjct: 67 EQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR 126
Query: 126 APTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKF 185
A GGDL+Y QGH +PGVYARAFLEGRLT+EQ+ NFRQEV G GLSSYPHPKLMP+F
Sbjct: 127 ARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEF 186
Query: 186 WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
WQFPTVSMGLGP+ AI+QA+FLKYL R + +T + ++ GDGEMDEPES I++A
Sbjct: 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIAT 246
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQ 305
REKLDNL+ ++NCNLQRLDGPV GN KII ELE F G GWNVIKV+W S WD+LL+ D
Sbjct: 247 REKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDT 306
Query: 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDL 365
+G L ++M +T+DG+YQ ++SK+ ++R++FFGK+P+ ++ + +DE IW L GGHD
Sbjct: 307 SGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDP 366
Query: 366 RKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKL 425
+KIY+AFK AQ+ K K TV+L +IKGYG+G E +N AH +KK++ G++ IRD +
Sbjct: 367 KKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNV 426
Query: 426 PIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILE 485
P+ D+++ +P+ + S E YL R+KL GYLP R+ EKL +P L+ F +LE
Sbjct: 427 PVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLE 486
Query: 486 PTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQL 545
++ISTT A+VR LN +L++K+I +R+VPI+ DE+RTFGMEGLFRQIGI+S GQ
Sbjct: 487 E--QSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQ 544
Query: 546 YDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGL 605
Y P D++QV YY+E++ GQILQEGIN G SW+AAATSYST+N MIPF+ +YSMFG
Sbjct: 545 YTPQDREQVAYYKEDEKGQILQEGINALGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGF 604
Query: 606 QRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAH 665
QRIGDL W AGD +ARGFLIGGTSGRTT+NGEGLQHEDGHSH+ + TIPNCI YDP +A+
Sbjct: 605 QRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAY 664
Query: 666 EVAIIIHHGLHCMISN-QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKS 724
EVA+I+H GL M QE+V+YYIT +NENY P + +G E+GI KG+Y L+ E S
Sbjct: 665 EVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLE--TIEGS 722
Query: 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKK 783
K KVQL+GSG+ILR + A++IL +++ + S V+S TSFT LARDGQ+ ERWNMLHP +
Sbjct: 723 KGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLET 782
Query: 784 QKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRD 843
+V YI + + + P + +TDYM+LFAEQVR ++P Y+VLGTDGFG SD+R+ LR
Sbjct: 783 PRVPYIAQVMNDA--PAVASTDYMKLFAEQVRTYVPADD-YRVLGTDGFGRSDSRENLRH 839
Query: 844 FFE 846
FE
Sbjct: 840 HFE 842
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/843 (55%), Positives = 624/843 (74%), Gaps = 10/843 (1%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTA-YINTISNN 65
D D +ET++W+ A++SVI+ EG RA YLI +++ + G+NV + YINTI
Sbjct: 7 DVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVE 66
Query: 66 FDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR 125
++PGN+++E ++S IRWNA+ V+RA+K D LGGH++SF S A I ++ FNHF+R
Sbjct: 67 EQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR 126
Query: 126 APTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKF 185
A GGDL+Y QGH +PGVYARAFLEGRLT+EQ+ NFRQEV G GLSSYPHPKLMP+F
Sbjct: 127 ARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEF 186
Query: 186 WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
WQFPTVSMGLGP+ AI+QA+FLKYL R + +T + ++ GDGEMDEPES I++A
Sbjct: 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIAT 246
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQ 305
REKLDNL+ ++NCNLQRLDGPV GN KII ELE F G GWNVIKV+W S WD+LL+ D
Sbjct: 247 REKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDT 306
Query: 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDL 365
+G L ++M +T+DG+YQ ++SK+ ++R++FFGK+P+ ++ + +DE IW L GGHD
Sbjct: 307 SGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDP 366
Query: 366 RKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKL 425
+KIY+AFK AQ+ K K TV+L +IKGYG+G + +N AH +KK++ G++ IRD +
Sbjct: 367 KKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNV 426
Query: 426 PIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILE 485
P+ D+++ +P+ + S E YL R+KL GYLP R+ EKL +P L+ F +LE
Sbjct: 427 PVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLE 486
Query: 486 PTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQL 545
++ISTT A+VR LN +L++K+I +R+VPI+ DE+RTFGMEGLFRQIGI+S GQ
Sbjct: 487 E--QSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQ 544
Query: 546 YDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGL 605
Y P D++QV YY+E++ GQILQEGINE G SW+AAATSYST+N MIPF+ +YSMFG
Sbjct: 545 YTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGF 604
Query: 606 QRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAH 665
QRIGDL W AGD +ARGFLIGGTSGRTT+NGEGLQHEDGHSH+ + TIPNCI YDP +A+
Sbjct: 605 QRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAY 664
Query: 666 EVAIIIHHGLHCMISN-QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKS 724
EVA+I+H GL M QE+V+YYIT +NENY P + +G E+GI KG+Y L+ E S
Sbjct: 665 EVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLE--TIEGS 722
Query: 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKK 783
K KVQL+GSG+ILR + A++IL +++ + S V+S TSFT LARDGQ+ ERWNMLHP +
Sbjct: 723 KGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLET 782
Query: 784 QKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRD 843
+V YI + + + P + +TDYM+LFAEQVR ++P Y+VLGTDGFG SD+R+ LR
Sbjct: 783 PRVPYIAQVMNDA--PAVASTDYMKLFAEQVRTYVPADD-YRVLGTDGFGRSDSRENLRH 839
Query: 844 FFE 846
FE
Sbjct: 840 HFE 842
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M K + VP+IG EVEV+ VMVK+GD + +QSL+ VE +K SME+P+ GVV+E+KV
Sbjct: 1 MVKEVNVPDIGG-DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Query: 911 KVGDKISKDSQILILE 926
VGDK+ S I+I E
Sbjct: 60 NVGDKVKTGSLIMIFE 75
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M K + VP+I VEV+ VMVK+GD + +QSL+ VE +K SME+P+ GVV+E+KV
Sbjct: 1 MVKEVNVPDI-----VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 55
Query: 911 KVGDKISKDSQILILE 926
VGDK+ S I+I E
Sbjct: 56 NVGDKVKTGSLIMIFE 71
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 110/236 (46%), Gaps = 28/236 (11%)
Query: 77 EEHLQSLIRWNAMALVIRANKIDSSLG-GHLSSFASLAHILEIGFNHFWR----APTHSH 131
++ LQ+L + A L I + + ++ G GH +S S A I+ + F H R P + H
Sbjct: 7 QQKLQAL-KDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPH 65
Query: 132 GGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQ---EVDGYGLSSYPHPKLMPKFWQF 188
+ +GH+AP +YA G L E +++N R+ ++DG HP F
Sbjct: 66 NDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDG-------HPVPKQAFTDV 118
Query: 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREK 248
T S+G G A A KY + + +++ L GDGE+ E ++ A+ K
Sbjct: 119 ATGSLGQGLGAACGMAYTGKYF------DKASYRVYCLLGDGELSEGSVWEAMAFASIYK 172
Query: 249 LDNLIMIVNCNL--QRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLK 302
LDNL+ I++ N Q P++ I Q+ F GW+ I ++ S ++L K
Sbjct: 173 LDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAF---GWHAI-IVDGHSVEELCK 224
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 32/239 (13%)
Query: 79 HLQSLIRWNAM---ALVIRANKIDSSLG---GHLSSFASLAHILEIGFNHFWR----APT 128
+ QS+ + A+ A +R + I ++ GH +S S A I+ + F H R P
Sbjct: 1 YFQSMQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPR 60
Query: 129 HSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQ---EVDGYGLSSYPHPKLMPKF 185
+ H + +GH+AP +YA G L E +++N R+ ++DG HP F
Sbjct: 61 NPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDG-------HPVPKQAF 113
Query: 186 WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
T S+G G A A KY + + +++ L GDGE+ E ++ A+
Sbjct: 114 TDVATGSLGQGLGAACGMAYTGKYF------DKASYRVYCLLGDGELSEGSVWEAMAFAS 167
Query: 246 REKLDNLIMIVNCNL--QRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLK 302
KLDNL+ I++ N Q P++ I Q+ F GW+ I ++ S ++L K
Sbjct: 168 IYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAF---GWHAI-IVDGHSVEELCK 222
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
+II+VP+IG + EV ++VK GD I+++Q L+V+ES K SME+PS GVV+ + VK+
Sbjct: 2 EIIRVPDIG--GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 913 GDKISKDSQILILE 926
GDK+ + I+ LE
Sbjct: 60 GDKLKEGDAIIELE 73
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 18/224 (8%)
Query: 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEI---GFNHFWRAPTH 129
NI+I + + +R+ + V +AN GH + LA IL + H + PT
Sbjct: 2 NIQILQEQANTLRFLSADXVQKANS------GHPGAPLGLADILSVLSYHLKHNPKNPTW 55
Query: 130 SHGGDLIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFWQ 187
+ L++ GH++ +Y+ L G L+ E + NFRQ S P HP++ +
Sbjct: 56 LNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQL-----HSKTPGHPEISTLGVE 110
Query: 188 FPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAARE 247
T +G G A+ A K ++ I+ KI+ LCGDG++ E S S+A
Sbjct: 111 IATGPLGQGVANAVGFAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLH 170
Query: 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
KLDN I+I + N ++G V + ++ F G+ V+ +
Sbjct: 171 KLDNFILIYDSNNISIEGDV--GLAFNENVKXRFEAQGFEVLSI 212
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 18/224 (8%)
Query: 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEI---GFNHFWRAPTH 129
NI+I + + +R+ + V +AN GH + LA IL + H + PT
Sbjct: 5 NIQILQEQANTLRFLSADXVQKANS------GHPGAPLGLADILSVLSYHLKHNPKNPTW 58
Query: 130 SHGGDLIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFWQ 187
+ L++ GH++ +Y+ L G L+ E + NFRQ S P HP++ +
Sbjct: 59 LNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQL-----HSKTPGHPEISTLGVE 113
Query: 188 FPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAARE 247
T +G G A+ A K ++ I+ KI+ LCGDG++ E S S+A
Sbjct: 114 IATGPLGQGVANAVGFAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLH 173
Query: 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
KLDN I+I + N ++G V + ++ F G+ V+ +
Sbjct: 174 KLDNFILIYDSNNISIEGDV--GLAFNENVKXRFEAQGFEVLSI 215
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 156 LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPL-----TAIHQARFLKYL 210
+T + + NFRQ +G + HP+ + V GPL TA+ A ++L
Sbjct: 108 VTXDDLKNFRQ----WGSKTPGHPE----YGHTAGVDATTGPLGQGIATAVGXAXAERHL 159
Query: 211 HA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPV 267
A R N ++ + +CGDG++ E S S+AA +L L+++ + N LDG +
Sbjct: 160 AAKYNRDAYNIVDHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDL 219
Query: 268 RGNSKIIQELEAHFYGVGWNVIKV 291
N + +E + GW VI+V
Sbjct: 220 --NRSFSESVEDRYKAYGWQVIRV 241
>pdb|1GJX|A Chain A, Solution Structure Of The Lipoyl Domain Of The Chimeric
Dihydrolipoyl Dehydrogenase P64k From Neisseria
Meningitidis
Length = 81
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 55/74 (74%)
Query: 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
+KVP+IG V++ V V +GDTI +D +L+ +E++K +M++P+ GVV+E+KVKVGD
Sbjct: 5 LKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD 64
Query: 915 KISKDSQILILEEQ 928
KIS+ I+++E +
Sbjct: 65 KISEGGLIVVVEAE 78
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 867 EVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
+V V+V++GD +++ Q LLV+E+ K+ EIPS +GVV+ I VK G+ + ++ L
Sbjct: 15 KVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 135 LIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSM 193
+ GH YA + G LT + + FRQ DG +P + P + T +
Sbjct: 62 FVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ--DGSRTPGHPERFVTPGV-EVTTGPL 118
Query: 194 GLGPLTAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLD 250
G G A+ A +L A R N ++ ++ CGDG + E +S+A L+
Sbjct: 119 GQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALE 178
Query: 251 NLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
LI+I + N +DG + ++ + +G++VI+V
Sbjct: 179 KLIVIYDSNYISIDGST--SLSFTEQCHQKYVAMGFHVIEV 217
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 92 VIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR---APTHSHGGD-LIYIQGHSAPGVY 147
V+ A+ + GH + SLA + F R + TH G D + GHS+ +Y
Sbjct: 32 VLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLY 91
Query: 148 ARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPL-----TAIH 202
+ +L G E I + + +G + HP+ F P V + GPL +A+
Sbjct: 92 IQLYLGGFGLELSDI---ESLRTWGSKTPGHPE----FRHTPGVEITTGPLGQGLASAVG 144
Query: 203 QARFLKYLH------ARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIV 256
A +Y A + + I+++ DG+++E + S+AA ++L NLI+
Sbjct: 145 MAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFY 204
Query: 257 NCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
+ N ++ N + ++ A + GW+V +V
Sbjct: 205 DRNQISIEDDT--NIALCEDTAARYRAYGWHVQEV 237
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 30/219 (13%)
Query: 89 MALVIRANKIDS---SLGGHLSSFASLAHI-LEIGFNHFWRAPTHSHGGD---LIYIQGH 141
MA IRA +D+ + GH +A I + + H PT+ H D + GH
Sbjct: 48 MANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGH 107
Query: 142 SAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKL--MPKFWQFPTVSMGLGPL 198
+ +Y+ L G L E++ NFRQ H K P++ P V GPL
Sbjct: 108 GSMLLYSLLHLTGYDLPIEELKNFRQL----------HSKTPGHPEYGITPGVETTTGPL 157
Query: 199 -----TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLD 250
A+ A L A R ++ ++ GDG + E S S+A KL+
Sbjct: 158 GQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKLN 217
Query: 251 NLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI 289
LI + + N +DG V + + F GWNVI
Sbjct: 218 KLIALYDDNGISIDGDVV--NWFHDDTPKRFEAYGWNVI 254
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 135 LIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSM 193
+ GH + +YA L G L E++ +FRQ +G + HP+ P V +
Sbjct: 64 FVLSAGHGSXLLYAVLHLTGYDLPLEELKSFRQ----WGSKTPGHPERG----HTPGVEV 115
Query: 194 GLGPL-----TAIHQARFLKYLHARKITNTINRK--------IWILCGDGEMDEPESISE 240
GPL TA+ A L RK+ NR ++L DG++ E S
Sbjct: 116 TTGPLGQGISTAVGLA-----LAERKLAAEFNRPGHVVVDHYTYVLASDGDLXEGVSGEA 170
Query: 241 ISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
S+A L LI+ + N +DGP + +++ A + GW ++V
Sbjct: 171 ASLAGHWGLSKLIVFWDDNRISIDGPT--DLAFTEDVLARYRAYGWQTLRV 219
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 30/219 (13%)
Query: 89 MALVIRANKIDS---SLGGHLSSFASLAHI-LEIGFNHFWRAPTHSHGGD---LIYIQGH 141
MA IRA +D+ + GH +A I + + H PT+ H D + GH
Sbjct: 48 MANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGH 107
Query: 142 SAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKL--MPKFWQFPTVSMGLGPL 198
+ +Y+ L G L E++ NFRQ H K P++ P V GPL
Sbjct: 108 GSMLLYSLLHLTGYDLPIEELKNFRQL----------HSKTPGHPEYGITPGVETTTGPL 157
Query: 199 -----TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLD 250
A+ A L A R ++ ++ GDG + E S S+A KL+
Sbjct: 158 GQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLN 217
Query: 251 NLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI 289
LI + + N +DG V + + F GWNVI
Sbjct: 218 KLIALYDDNGISIDGDVV--NWFHDDTPKRFEAYGWNVI 254
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1088 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1111 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1170
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1111 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1170
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1111 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1170
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1111 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1170
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1088 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1088 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 89 MALVIRANKIDS---SLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGH 141
+A IRA +D+ + GH + +A I E+ + F + P+ + + GH
Sbjct: 7 LANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGH 66
Query: 142 SAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKL-MPKFWQFPTVSMGLGPL 198
+ +Y+ L G L E++ NFRQ S P HP++ + T +G G
Sbjct: 67 GSMLIYSLLHLTGYDLPMEELKNFRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIA 121
Query: 199 TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMI 255
A+ A K L A R + ++ + GDG M E S S+A KL LI
Sbjct: 122 NAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAF 181
Query: 256 VNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292
+ N +DG V G + F GW+VI+ I
Sbjct: 182 YDDNGISIDGHVEG--WFTDDTAMRFEAYGWHVIRDI 216
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 89 MALVIRANKIDS---SLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGH 141
+A IRA +D+ + GH + +A I E+ + F + P+ + + GH
Sbjct: 6 LANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGH 65
Query: 142 SAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFW-QFPTVSMGLGPL 198
+ +Y+ L G L E++ NFRQ S P HP++ + T +G G
Sbjct: 66 GSMLIYSLLHLTGYDLPMEELKNFRQL-----HSKTPGHPEVGKTAGVETTTGPLGQGIA 120
Query: 199 TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMI 255
A+ A K L A R + ++ + GDG M E S S+A KL LI
Sbjct: 121 NAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAF 180
Query: 256 VNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292
+ N +DG V G + F GW+VI+ I
Sbjct: 181 YDDNGISIDGHVEG--WFTDDTAMRFEAYGWHVIRDI 215
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDL 135
I++ S IR A+ V +AN S G A AH+L P +
Sbjct: 7 IDKLAVSTIRILAVDTVSKAN---SGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRF 63
Query: 136 IYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMG 194
+ GH+ +Y+ L G L+ E + FRQ G + HP+ ++ P V +
Sbjct: 64 VLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ----LGSRTPGHPE-----FELPGVEVT 114
Query: 195 LGPL---------TAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
GPL A+ QA + T + N ++ GDG + E S S+A
Sbjct: 115 TGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNY-TYVFLGDGCLQEGISSEASSLAG 173
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
KL NLI I + N +DG + +++ + GW V+ V
Sbjct: 174 HLKLGNLIAIYDDNKITIDGAT--SISFDEDVAKRYEAYGWEVLYV 217
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 352 DEDI--------WNLTF---GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGE 400
DED+ W + + G DL I A A+ +KDKPT++ + + GYG G
Sbjct: 200 DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYGSLHAGS 259
Query: 401 ARNTAHNIKKIDHQGIKSIRDF 422
+K D + +KS F
Sbjct: 260 HSVAGAPLKADDVKQLKSKFGF 281
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDL 135
I++ S IR A+ V +AN S G A AH+L P +
Sbjct: 5 IDKLAVSTIRILAVDTVSKAN---SGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRF 61
Query: 136 IYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMG 194
+ GH+ +Y+ L G L+ E + FRQ G + HP+ ++ P V +
Sbjct: 62 VLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ----LGSRTPGHPE-----FELPGVEVT 112
Query: 195 LGPL---------TAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
GPL A+ QA + T + N ++ GDG + E S S+A
Sbjct: 113 TGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNY-TYVFLGDGCLQEGISSEASSLAG 171
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
KL NLI I + N +DG + +++ + GW V+ V
Sbjct: 172 HLKLGNLIAIYDDNKITIDGAT--SISFDEDVAKRYEAYGWEVLYV 215
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 352 DEDI--------WNLTF---GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGE 400
DED+ W + + G DL I A A+ +KDKPT++ + + GYG G
Sbjct: 198 DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYGSLHAGS 257
Query: 401 ARNTAHNIKKIDHQGIKSIRDF 422
+K D + +KS F
Sbjct: 258 HSVHGAPLKADDVKQLKSKFGF 279
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDL 135
I++ S IR A+ V +AN S G A AH+L P +
Sbjct: 7 IDKLAVSTIRILAVDTVSKAN---SGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRF 63
Query: 136 IYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMG 194
+ GH+ +Y+ L G L+ E + FRQ G + HP+ ++ P V +
Sbjct: 64 VLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ----LGSRTPGHPE-----FELPGVEVT 114
Query: 195 LGPL---------TAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA 245
GPL A+ QA + T + N ++ GDG + E S S+A
Sbjct: 115 TGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNY-TYVFLGDGCLQEGISSEASSLAG 173
Query: 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
KL NLI I + N +DG + +++ + GW V+ V
Sbjct: 174 HLKLGNLIAIYDDNKITIDGAT--SISFDEDVAKRYEAYGWEVLYV 217
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 352 DEDI--------WNLTF---GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGE 400
DED+ W + + G DL I A A+ +KDKPT++ + + GYG G
Sbjct: 200 DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYGSLHAGS 259
Query: 401 ARNTAHNIKKIDHQGIKSIRDF 422
+K D + +KS F
Sbjct: 260 HSVHGAPLKADDVKQLKSKFGF 281
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI 916
VS ++VK GDT+K Q++LV+E+ K+ EI + +G V ++ VK D +
Sbjct: 19 VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAV 67
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI 916
VS ++VK GDT+K Q++LV+E+ K+ EI + +G V ++ VK D +
Sbjct: 26 VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAV 74
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 856 KVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
K+P+IG+ ++E E+ VK GD ++ DQ L+ V ++KV+++IPS G + +I + G
Sbjct: 5 KLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ 64
Query: 915 KISKDSQILILE 926
+ S +L ++
Sbjct: 65 VVPVGSTLLQID 76
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 856 KVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
K+P+IG+ + E E+ VK GD + D L V+++K +EIPS G V EI V G
Sbjct: 5 KLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG- 63
Query: 915 KISKDSQILI 924
++ Q LI
Sbjct: 64 TVATVGQTLI 73
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
I VP++ + +++ V+T K GD + D+ L+ +E++KV +E+P+S +G++ + G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 914 DKISKDSQIL 923
++ QIL
Sbjct: 65 TTVTS-RQIL 73
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 856 KVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
K+ +IG+ + EV V VK GDT+ S+ V+S+K S+ I S ++GV++++ + D
Sbjct: 8 KLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD 67
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
IK P + +++ V+T K G+ +K D+ ++ +E++KV ME+ + +GV+ EI G
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Query: 914 DKI 916
D +
Sbjct: 64 DTV 66
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 856 KVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
K+P+IG+ + E E+ VK GD + D L V+++K +EIPS G V EI V G
Sbjct: 6 KLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG- 64
Query: 915 KISKDSQILI 924
++ Q LI
Sbjct: 65 TVATVGQTLI 74
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 156 LTEEQMINFRQEVDGYGLSSYPHPKL--MPKFWQFPTVSMGLGPL-----TAIHQARFLK 208
L+ E + NFRQ H K P++ P V GPL A+ A K
Sbjct: 84 LSIEDIKNFRQL----------HSKTPGHPEYGYTPGVETTTGPLGQGVANAVGXALGEK 133
Query: 209 YLHARKIT---NTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG 265
L R T I+ ++ GDG + E S S+A L+ L+ + N +DG
Sbjct: 134 LLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISIDG 193
Query: 266 PVRGNSKIIQELEAHFYGVGWNVIKVI 292
+G F GW+VI+ +
Sbjct: 194 DTKG--WFSDNTPERFRAYGWHVIENV 218
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+V+ G T++ +L+V+E+ K+ I + H GVV+ + G+ + + + ++ L+E
Sbjct: 596 VLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 652
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
V VK GD I+ Q + ++ES K+ + I + +G+V+E+K K GD +++ +L L
Sbjct: 13 VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
V V VK GD + Q + V+E+ K+ + + G V+ + + GD + + ++ LE
Sbjct: 36 VVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI-SKD 919
+S V V G + L+ +E+ K+ I + +G + E+ VK GD+I +KD
Sbjct: 1106 ISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKD 1158
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI-SKD 919
+S V V G + L+ +E+ K+ I + +G + E+ VK GD+I +KD
Sbjct: 1106 ISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKD 1158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,676,522
Number of Sequences: 62578
Number of extensions: 1246457
Number of successful extensions: 3046
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2937
Number of HSP's gapped (non-prelim): 75
length of query: 929
length of database: 14,973,337
effective HSP length: 108
effective length of query: 821
effective length of database: 8,214,913
effective search space: 6744443573
effective search space used: 6744443573
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)