Query psy2375
Match_columns 929
No_of_seqs 655 out of 3903
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:21:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2609 AceE Pyruvate dehydrog 100.0 7E-239 2E-243 1987.2 67.8 871 1-877 1-877 (887)
2 TIGR00759 aceE pyruvate dehydr 100.0 6E-220 1E-224 1924.0 72.9 873 5-881 3-879 (885)
3 PRK09405 aceE pyruvate dehydro 100.0 9E-214 2E-218 1897.0 77.7 875 3-881 7-885 (891)
4 PRK13012 2-oxoacid dehydrogena 100.0 3E-209 6E-214 1866.8 77.3 866 5-879 17-888 (896)
5 TIGR03186 AKGDH_not_PDH alpha- 100.0 4E-207 9E-212 1839.1 77.4 867 5-878 3-879 (889)
6 COG0021 TktA Transketolase [Ca 100.0 8E-104 2E-108 898.4 54.8 635 75-860 4-662 (663)
7 PRK12753 transketolase; Review 100.0 2E-102 5E-107 934.1 61.7 628 80-859 7-662 (663)
8 PRK12754 transketolase; Review 100.0 4E-102 9E-107 926.2 57.9 628 80-859 7-662 (663)
9 TIGR00232 tktlase_bact transke 100.0 1.8E-99 4E-104 909.6 60.3 626 80-859 3-652 (653)
10 PTZ00089 transketolase; Provis 100.0 6.1E-98 1E-102 897.5 59.1 628 75-860 4-658 (661)
11 PLN02790 transketolase 100.0 1.1E-97 2E-102 894.3 60.4 625 84-859 1-653 (654)
12 KOG0523|consensus 100.0 3.3E-97 7E-102 834.6 43.4 609 76-862 9-627 (632)
13 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.5E-94 3.3E-99 818.5 47.5 614 56-861 2-623 (627)
14 PLN02582 1-deoxy-D-xylulose-5- 100.0 3.5E-91 7.5E-96 830.4 55.6 613 56-861 31-667 (677)
15 PRK05899 transketolase; Review 100.0 6.1E-90 1.3E-94 828.2 59.9 611 70-859 2-623 (624)
16 PLN02225 1-deoxy-D-xylulose-5- 100.0 6E-91 1.3E-95 821.3 47.3 591 55-861 75-691 (701)
17 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 9.8E-90 2.1E-94 820.8 54.2 567 59-860 1-616 (617)
18 PLN02234 1-deoxy-D-xylulose-5- 100.0 1.1E-88 2.4E-93 802.3 51.6 534 54-820 62-620 (641)
19 PRK12571 1-deoxy-D-xylulose-5- 100.0 3.1E-87 6.8E-92 801.5 53.6 571 55-861 5-628 (641)
20 PRK05444 1-deoxy-D-xylulose-5- 100.0 9.4E-85 2E-89 776.8 53.6 567 55-859 3-579 (580)
21 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.5E-84 3.3E-89 772.1 53.3 565 58-860 2-580 (581)
22 cd02017 TPP_E1_EcPDC_like Thia 100.0 4.3E-79 9.2E-84 676.3 37.8 384 74-458 1-385 (386)
23 PRK05261 putative phosphoketol 100.0 4.8E-64 1E-68 597.7 50.5 629 100-860 46-741 (785)
24 COG3958 Transketolase, C-termi 100.0 1.4E-56 3.1E-61 470.7 25.7 299 492-860 6-312 (312)
25 PF00456 Transketolase_N: Tran 100.0 3.2E-56 6.9E-61 493.8 26.5 280 78-445 2-289 (332)
26 COG3959 Transketolase, N-termi 100.0 3.2E-50 7E-55 408.2 24.1 234 72-392 6-243 (243)
27 cd02012 TPP_TK Thiamine pyroph 100.0 4E-44 8.8E-49 387.0 27.6 248 83-418 2-253 (255)
28 PF13292 DXP_synthase_N: 1-deo 100.0 9.9E-45 2.1E-49 380.9 11.9 264 59-389 1-270 (270)
29 CHL00144 odpB pyruvate dehydro 100.0 1.1E-40 2.4E-45 371.0 26.6 297 492-860 3-323 (327)
30 PLN02683 pyruvate dehydrogenas 100.0 2.7E-39 5.8E-44 363.2 27.7 306 489-860 23-350 (356)
31 COG3957 Phosphoketolase [Carbo 100.0 2.4E-38 5.1E-43 362.2 35.3 637 103-860 60-751 (793)
32 PRK09212 pyruvate dehydrogenas 100.0 3.2E-39 7E-44 359.7 26.6 301 492-860 3-323 (327)
33 PRK11892 pyruvate dehydrogenas 100.0 9.7E-39 2.1E-43 368.3 27.2 297 491-859 140-461 (464)
34 cd02007 TPP_DXS Thiamine pyrop 100.0 9.2E-38 2E-42 324.1 21.1 194 103-395 1-195 (195)
35 PTZ00182 3-methyl-2-oxobutanat 100.0 3.2E-37 6.8E-42 346.4 26.0 300 491-859 33-354 (355)
36 PRK09404 sucA 2-oxoglutarate d 100.0 3.1E-28 6.6E-33 297.7 40.6 462 191-770 314-849 (924)
37 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.7E-27 3.7E-32 289.8 37.9 472 188-770 312-855 (929)
38 COG0022 AcoB Pyruvate/2-oxoglu 100.0 3.7E-27 7.9E-32 250.7 22.3 295 493-857 2-319 (324)
39 cd02011 TPP_PK Thiamine pyroph 99.9 2.7E-27 5.8E-32 247.8 17.7 188 139-408 2-226 (227)
40 cd07033 TPP_PYR_DXS_TK_like Py 99.9 2.5E-25 5.4E-30 223.4 17.9 155 498-691 2-156 (156)
41 PF02779 Transket_pyr: Transke 99.9 6E-25 1.3E-29 225.3 14.1 170 491-693 1-174 (178)
42 smart00861 Transket_pyr Transk 99.9 2.7E-23 5.9E-28 210.8 16.7 166 494-692 1-167 (168)
43 PF09364 XFP_N: XFP N-terminal 99.9 2.8E-23 6.1E-28 226.1 15.6 253 100-424 44-324 (379)
44 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 9E-23 2E-27 206.7 15.9 154 497-688 1-164 (167)
45 KOG0524|consensus 99.9 2.4E-21 5.3E-26 201.0 19.5 263 490-816 32-309 (359)
46 COG1071 AcoA Pyruvate/2-oxoglu 99.9 1.7E-20 3.7E-25 207.6 24.4 254 70-423 23-288 (358)
47 CHL00149 odpA pyruvate dehydro 99.9 8.8E-20 1.9E-24 204.7 26.0 263 69-423 15-285 (341)
48 PLN02269 Pyruvate dehydrogenas 99.9 8.3E-20 1.8E-24 205.6 25.2 251 70-421 26-284 (362)
49 PLN02374 pyruvate dehydrogenas 99.8 2E-19 4.3E-24 206.3 27.2 261 70-423 82-351 (433)
50 cd02000 TPP_E1_PDC_ADC_BCADC T 99.8 1.6E-18 3.5E-23 191.4 24.5 199 133-422 48-254 (293)
51 TIGR03182 PDH_E1_alph_y pyruva 99.8 9.6E-18 2.1E-22 186.8 24.2 250 74-423 2-260 (315)
52 PF00676 E1_dh: Dehydrogenase 99.8 3.8E-18 8.3E-23 188.7 17.6 199 133-421 46-250 (300)
53 TIGR03181 PDH_E1_alph_x pyruva 99.8 4.7E-17 1E-21 183.1 25.1 250 70-423 20-273 (341)
54 KOG0525|consensus 99.7 5.8E-16 1.3E-20 158.9 13.9 232 491-770 39-285 (362)
55 KOG1182|consensus 99.6 1.5E-15 3.3E-20 160.9 12.4 283 38-421 28-343 (432)
56 cd02016 TPP_E1_OGDC_like Thiam 99.6 4.2E-14 9.2E-19 152.3 15.5 137 189-397 111-253 (265)
57 KOG0225|consensus 99.4 4.2E-12 9.2E-17 136.5 17.8 247 72-421 57-312 (394)
58 PF00364 Biotin_lipoyl: Biotin 99.4 2.8E-13 6.1E-18 119.2 6.8 71 855-925 3-74 (74)
59 PF02780 Transketolase_C: Tran 99.4 3.3E-14 7.1E-19 137.3 0.8 106 725-852 9-124 (124)
60 COG0511 AccB Biotin carboxyl c 99.4 8E-13 1.7E-17 130.3 7.6 65 863-927 76-140 (140)
61 PRK06748 hypothetical protein; 99.4 2E-12 4.3E-17 115.4 8.8 65 864-928 11-76 (83)
62 cd00568 TPP_enzymes Thiamine p 99.3 7.6E-12 1.6E-16 126.2 12.7 119 186-389 41-168 (168)
63 PRK05889 putative acetyl-CoA c 99.3 5.6E-12 1.2E-16 110.0 8.5 63 864-926 9-71 (71)
64 COG0508 AceF Pyruvate/2-oxoglu 99.3 4.5E-12 9.8E-17 145.5 8.7 76 852-927 2-78 (404)
65 PLN02226 2-oxoglutarate dehydr 99.3 5.5E-12 1.2E-16 145.2 9.3 83 845-927 84-167 (463)
66 PTZ00144 dihydrolipoamide succ 99.3 1.1E-11 2.5E-16 141.7 9.0 80 848-927 40-120 (418)
67 cd02004 TPP_BZL_OCoD_HPCL Thia 99.2 5.5E-11 1.2E-15 121.3 12.6 115 190-389 47-171 (172)
68 PRK14875 acetoin dehydrogenase 99.2 1.6E-11 3.5E-16 138.7 9.4 75 853-927 3-78 (371)
69 cd02008 TPP_IOR_alpha Thiamine 99.2 5.4E-11 1.2E-15 122.2 12.3 119 189-389 49-176 (178)
70 PRK08225 acetyl-CoA carboxylas 99.2 6.7E-11 1.5E-15 102.9 8.0 63 864-926 8-70 (70)
71 PRK05704 dihydrolipoamide succ 99.1 1.3E-10 2.9E-15 133.6 9.5 75 853-927 3-78 (407)
72 cd03372 TPP_ComE Thiamine pyro 99.1 5.1E-10 1.1E-14 115.2 12.0 119 189-394 40-159 (179)
73 cd03371 TPP_PpyrDC Thiamine py 99.1 5.7E-10 1.2E-14 115.7 11.7 120 189-394 46-167 (188)
74 TIGR01347 sucB 2-oxoglutarate 99.1 3E-10 6.5E-15 130.4 9.6 74 854-927 2-76 (403)
75 PRK06549 acetyl-CoA carboxylas 99.1 3.8E-10 8.1E-15 109.4 8.3 63 863-925 67-129 (130)
76 cd02003 TPP_IolD Thiamine pyro 99.1 8.2E-10 1.8E-14 116.1 11.3 121 189-394 46-188 (205)
77 cd02002 TPP_BFDC Thiamine pyro 99.0 1.3E-09 2.8E-14 111.6 11.3 88 191-291 49-152 (178)
78 cd06663 Biotinyl_lipoyl_domain 99.0 1.1E-09 2.4E-14 95.8 8.9 69 857-925 4-73 (73)
79 PF03894 XFP: D-xylulose 5-pho 99.0 4E-09 8.6E-14 105.8 13.6 163 496-677 1-179 (179)
80 PRK06163 hypothetical protein; 99.0 4.3E-09 9.4E-14 110.3 14.2 122 190-396 56-179 (202)
81 PRK11854 aceF pyruvate dehydro 99.0 7.6E-10 1.6E-14 134.3 8.7 76 851-927 205-280 (633)
82 KOG0559|consensus 99.0 2.6E-10 5.5E-15 123.5 4.1 83 845-927 65-148 (457)
83 PRK05641 putative acetyl-CoA c 99.0 1.2E-09 2.6E-14 109.1 8.1 63 863-925 90-152 (153)
84 cd02015 TPP_AHAS Thiamine pyro 99.0 4.1E-09 8.8E-14 109.0 12.0 117 190-391 49-175 (186)
85 TIGR02927 SucB_Actino 2-oxoglu 99.0 1.1E-09 2.4E-14 131.6 9.0 75 853-927 136-211 (590)
86 TIGR03297 Ppyr-DeCO2ase phosph 99.0 3.5E-09 7.6E-14 120.1 12.4 120 189-394 219-340 (361)
87 PRK07051 hypothetical protein; 99.0 2E-09 4.4E-14 96.2 8.2 57 870-926 23-79 (80)
88 TIGR00531 BCCP acetyl-CoA carb 99.0 1.1E-09 2.4E-14 110.0 7.3 70 857-926 85-156 (156)
89 cd02001 TPP_ComE_PpyrDC Thiami 99.0 4.1E-09 8.9E-14 106.2 11.3 116 190-392 41-157 (157)
90 cd02005 TPP_PDC_IPDC Thiamine 99.0 5.2E-09 1.1E-13 108.1 12.3 118 189-390 48-174 (183)
91 PLN02983 biotin carboxyl carri 98.9 1.8E-09 3.8E-14 114.5 8.0 58 870-927 217-274 (274)
92 TIGR03336 IOR_alpha indolepyru 98.9 2.4E-08 5.3E-13 120.9 18.7 251 563-858 46-334 (595)
93 TIGR01348 PDHac_trf_long pyruv 98.9 1.7E-09 3.7E-14 129.0 8.5 76 852-927 116-191 (546)
94 KOG0557|consensus 98.9 2E-09 4.4E-14 121.2 7.8 76 852-927 38-115 (470)
95 PRK11854 aceF pyruvate dehydro 98.9 2.9E-09 6.2E-14 129.4 9.4 73 854-927 4-76 (633)
96 PRK06302 acetyl-CoA carboxylas 98.9 2.4E-09 5.2E-14 107.5 7.0 71 856-926 83-155 (155)
97 cd02013 TPP_Xsc_like Thiamine 98.9 1.2E-08 2.6E-13 106.6 12.5 119 190-392 52-181 (196)
98 TIGR03846 sulfopy_beta sulfopy 98.9 1.3E-08 2.8E-13 105.0 11.8 88 190-291 41-130 (181)
99 PLN02528 2-oxoisovalerate dehy 98.9 5.2E-09 1.1E-13 121.0 9.5 72 856-927 2-74 (416)
100 cd02014 TPP_POX Thiamine pyrop 98.9 1.5E-08 3.3E-13 104.1 11.7 116 190-390 50-173 (178)
101 cd06850 biotinyl_domain The bi 98.9 8.8E-09 1.9E-13 87.7 8.3 62 864-925 6-67 (67)
102 PRK11855 dihydrolipoamide acet 98.8 5.3E-09 1.2E-13 125.2 8.9 76 852-927 119-194 (547)
103 PRK12270 kgd alpha-ketoglutara 98.8 4.7E-07 1E-11 109.8 24.9 464 199-769 627-1151(1228)
104 PRK14042 pyruvate carboxylase 98.8 5.7E-09 1.2E-13 124.5 8.9 66 862-927 530-595 (596)
105 PLN02744 dihydrolipoyllysine-r 98.8 6E-09 1.3E-13 122.7 8.7 74 853-926 113-188 (539)
106 PRK07119 2-ketoisovalerate fer 98.8 4.1E-07 9E-12 103.3 22.9 229 559-819 45-320 (352)
107 cd02010 TPP_ALS Thiamine pyrop 98.8 2.6E-08 5.6E-13 102.4 11.9 62 189-263 46-107 (177)
108 PF02775 TPP_enzyme_C: Thiamin 98.8 1.7E-08 3.8E-13 100.9 9.1 117 188-387 25-153 (153)
109 TIGR01349 PDHac_trf_mito pyruv 98.8 1.7E-08 3.7E-13 117.3 9.1 73 855-927 2-76 (435)
110 cd02006 TPP_Gcl Thiamine pyrop 98.8 4.8E-08 1E-12 102.5 11.3 61 190-263 56-116 (202)
111 PRK08266 hypothetical protein; 98.7 5E-08 1.1E-12 117.0 12.9 119 190-393 401-528 (542)
112 COG4770 Acetyl/propionyl-CoA c 98.7 1.4E-08 3E-13 116.5 7.2 65 863-927 581-645 (645)
113 PF09363 XFP_C: XFP C-terminal 98.7 5.2E-08 1.1E-12 100.2 10.0 144 704-860 12-162 (203)
114 PRK07092 benzoylformate decarb 98.7 5.4E-08 1.2E-12 116.5 11.9 90 189-291 405-503 (530)
115 PRK11856 branched-chain alpha- 98.7 3.5E-08 7.6E-13 114.4 9.5 75 853-927 3-78 (411)
116 PRK11892 pyruvate dehydrogenas 98.7 3.2E-08 6.9E-13 115.6 8.7 74 854-927 4-79 (464)
117 cd02009 TPP_SHCHC_synthase Thi 98.7 6.3E-08 1.4E-12 99.3 9.7 114 190-389 50-174 (175)
118 TIGR02712 urea_carbox urea car 98.7 2.7E-08 5.9E-13 128.1 8.4 64 863-926 1138-1201(1201)
119 PRK11864 2-ketoisovalerate fer 98.7 1.4E-07 3E-12 104.0 11.8 67 189-263 67-133 (300)
120 PRK08659 2-oxoglutarate ferred 98.6 4.1E-06 8.8E-11 96.0 23.7 227 561-819 47-347 (376)
121 TIGR01348 PDHac_trf_long pyruv 98.6 6.7E-08 1.5E-12 115.5 9.1 73 855-927 3-75 (546)
122 PRK14040 oxaloacetate decarbox 98.6 5.6E-08 1.2E-12 116.6 8.4 66 861-926 528-593 (593)
123 TIGR01108 oadA oxaloacetate de 98.6 4E-08 8.8E-13 117.7 7.0 62 861-922 521-582 (582)
124 cd03376 TPP_PFOR_porB_like Thi 98.6 3.2E-07 6.9E-12 98.6 12.7 59 189-260 60-118 (235)
125 TIGR01235 pyruv_carbox pyruvat 98.6 6.8E-08 1.5E-12 123.3 8.6 66 861-926 1078-1143(1143)
126 PRK06112 acetolactate synthase 98.6 2.2E-07 4.8E-12 112.4 12.6 117 190-391 436-561 (578)
127 PRK11855 dihydrolipoamide acet 98.6 9.7E-08 2.1E-12 114.5 9.1 74 854-927 4-77 (547)
128 PRK06965 acetolactate synthase 98.6 3E-07 6.4E-12 111.5 13.3 117 191-391 437-563 (587)
129 cd03375 TPP_OGFOR Thiamine pyr 98.6 4.1E-07 8.8E-12 94.9 12.3 61 191-263 51-111 (193)
130 PRK08199 thiamine pyrophosphat 98.6 2.7E-07 5.9E-12 111.1 12.7 118 189-391 413-539 (557)
131 KOG0558|consensus 98.6 4.5E-08 9.8E-13 105.8 4.9 78 851-928 63-141 (474)
132 TIGR02927 SucB_Actino 2-oxoglu 98.6 1.1E-07 2.4E-12 114.6 8.6 74 854-927 4-78 (590)
133 PRK07524 hypothetical protein; 98.6 3.2E-07 6.9E-12 110.1 12.1 120 190-394 406-533 (535)
134 PRK08327 acetolactate synthase 98.5 4.3E-07 9.3E-12 109.7 12.9 63 190-263 429-491 (569)
135 PRK06546 pyruvate dehydrogenas 98.5 4.6E-07 1E-11 109.6 12.8 119 189-392 406-532 (578)
136 PRK09282 pyruvate carboxylase 98.5 1.4E-07 3.1E-12 113.3 8.1 66 862-927 527-592 (592)
137 PRK06154 hypothetical protein; 98.5 4.5E-07 9.8E-12 109.4 12.4 120 190-394 430-559 (565)
138 TIGR03457 sulphoacet_xsc sulfo 98.5 4E-07 8.7E-12 110.2 12.0 60 191-263 430-489 (579)
139 TIGR02720 pyruv_oxi_spxB pyruv 98.5 5.1E-07 1.1E-11 109.2 12.3 61 190-263 407-467 (575)
140 PRK07979 acetolactate synthase 98.5 7E-07 1.5E-11 108.0 13.5 60 191-263 421-480 (574)
141 TIGR02418 acolac_catab acetola 98.5 6.2E-07 1.3E-11 107.7 12.9 62 189-263 406-467 (539)
142 PRK06466 acetolactate synthase 98.5 6.2E-07 1.3E-11 108.5 12.8 117 191-391 423-549 (574)
143 PRK08979 acetolactate synthase 98.5 6E-07 1.3E-11 108.5 12.4 59 191-262 421-479 (572)
144 COG1038 PycA Pyruvate carboxyl 98.5 1.4E-07 2.9E-12 111.4 6.4 66 861-926 1083-1148(1149)
145 PRK09107 acetolactate synthase 98.5 6.8E-07 1.5E-11 108.5 12.5 116 191-391 430-555 (595)
146 PLN02470 acetolactate synthase 98.5 6.6E-07 1.4E-11 108.5 12.3 117 190-391 425-558 (585)
147 PRK08611 pyruvate oxidase; Pro 98.5 6.8E-07 1.5E-11 108.2 12.4 117 190-391 407-531 (576)
148 PRK09124 pyruvate dehydrogenas 98.5 8E-07 1.7E-11 107.5 13.0 118 189-391 406-531 (574)
149 PRK07064 hypothetical protein; 98.5 6.6E-07 1.4E-11 107.5 11.8 116 190-390 404-528 (544)
150 PRK06048 acetolactate synthase 98.5 8.5E-07 1.9E-11 107.0 12.8 59 191-262 414-472 (561)
151 PRK06725 acetolactate synthase 98.5 8.9E-07 1.9E-11 107.0 12.8 116 191-391 422-546 (570)
152 PRK08527 acetolactate synthase 98.5 1E-06 2.2E-11 106.4 12.9 60 191-263 414-473 (563)
153 PRK12474 hypothetical protein; 98.5 9.3E-07 2E-11 105.6 12.5 61 190-263 388-448 (518)
154 PRK08322 acetolactate synthase 98.5 1.2E-06 2.5E-11 105.5 13.3 117 190-391 405-529 (547)
155 CHL00099 ilvB acetohydroxyacid 98.5 9.9E-07 2.1E-11 106.9 12.7 61 189-262 428-488 (585)
156 PRK06882 acetolactate synthase 98.4 9.4E-07 2E-11 106.9 12.4 118 190-391 420-547 (574)
157 TIGR03393 indolpyr_decarb indo 98.4 6.9E-07 1.5E-11 107.3 11.1 62 189-263 402-463 (539)
158 PRK07710 acetolactate synthase 98.4 8.9E-07 1.9E-11 107.1 11.9 60 191-263 424-483 (571)
159 PRK12999 pyruvate carboxylase; 98.4 2.9E-07 6.3E-12 118.2 8.0 65 863-927 1082-1146(1146)
160 PRK08155 acetolactate synthase 98.4 1.2E-06 2.6E-11 105.8 12.8 116 191-391 419-544 (564)
161 PRK08978 acetolactate synthase 98.4 1.1E-06 2.3E-11 105.9 12.2 60 191-263 401-460 (548)
162 TIGR01504 glyox_carbo_lig glyo 98.4 1.1E-06 2.4E-11 106.6 12.0 59 191-262 418-476 (588)
163 cd06849 lipoyl_domain Lipoyl d 98.4 1.3E-06 2.8E-11 74.2 8.9 70 856-925 4-74 (74)
164 TIGR00118 acolac_lg acetolacta 98.4 1.1E-06 2.3E-11 106.1 11.5 116 191-391 412-537 (558)
165 PRK07586 hypothetical protein; 98.4 1.2E-06 2.5E-11 104.7 11.5 61 190-263 384-444 (514)
166 PRK06276 acetolactate synthase 98.4 1.2E-06 2.7E-11 106.2 11.8 59 191-262 419-477 (586)
167 PRK07525 sulfoacetaldehyde ace 98.4 1.5E-06 3.2E-11 105.5 12.4 61 190-263 434-494 (588)
168 PRK11269 glyoxylate carboligas 98.4 1.4E-06 3E-11 105.9 12.0 60 190-262 418-477 (591)
169 PRK08273 thiamine pyrophosphat 98.4 1.6E-06 3.5E-11 105.4 12.5 116 191-391 415-547 (597)
170 PRK06457 pyruvate dehydrogenas 98.4 1.8E-06 4E-11 103.9 12.7 62 190-263 395-456 (549)
171 PRK05858 hypothetical protein; 98.4 2E-06 4.2E-11 103.5 12.7 61 190-263 406-466 (542)
172 PRK06456 acetolactate synthase 98.4 1.8E-06 3.9E-11 104.4 12.4 61 190-263 420-480 (572)
173 PRK07418 acetolactate synthase 98.4 1.7E-06 3.7E-11 105.5 12.3 60 190-262 433-492 (616)
174 PRK07789 acetolactate synthase 98.4 1.5E-06 3.3E-11 105.8 11.7 59 191-262 447-505 (612)
175 cd02018 TPP_PFOR Thiamine pyro 98.4 2.3E-06 5E-11 92.1 11.5 66 189-262 62-128 (237)
176 PRK08617 acetolactate synthase 98.4 1.7E-06 3.8E-11 104.1 11.8 61 190-263 413-473 (552)
177 COG0028 IlvB Thiamine pyrophos 98.4 1.7E-06 3.6E-11 103.7 11.5 118 189-392 406-533 (550)
178 PLN02573 pyruvate decarboxylas 98.4 1.5E-06 3.2E-11 105.3 11.0 61 190-263 427-487 (578)
179 TIGR03254 oxalate_oxc oxalyl-C 98.3 3.4E-06 7.3E-11 101.7 12.9 116 191-392 417-540 (554)
180 PRK05778 2-oxoglutarate ferred 98.3 3.9E-06 8.4E-11 93.1 11.3 61 191-263 70-130 (301)
181 PRK07282 acetolactate synthase 98.3 2.9E-06 6.3E-11 102.5 11.1 61 190-263 417-477 (566)
182 PRK09259 putative oxalyl-CoA d 98.3 4.4E-06 9.6E-11 101.0 12.6 119 190-394 423-550 (569)
183 KOG0369|consensus 98.3 1.5E-06 3.2E-11 100.8 7.2 67 861-927 1110-1176(1176)
184 TIGR03394 indol_phenyl_DC indo 98.2 4.5E-06 9.8E-11 100.2 11.1 115 191-390 403-521 (535)
185 PRK11866 2-oxoacid ferredoxin 98.2 8.7E-06 1.9E-10 89.4 11.8 118 190-390 58-192 (279)
186 PRK09628 oorB 2-oxoglutarate-a 98.2 6.2E-06 1.3E-10 90.5 10.6 60 192-263 69-128 (277)
187 TIGR02177 PorB_KorB 2-oxoacid: 98.2 9.9E-06 2.1E-10 89.2 11.9 60 192-263 54-113 (287)
188 PRK11865 pyruvate ferredoxin o 98.2 2.1E-05 4.6E-10 87.0 14.2 64 188-261 66-130 (299)
189 PRK09622 porA pyruvate flavodo 98.2 8E-05 1.7E-09 86.4 19.4 222 563-817 57-341 (407)
190 PRK07449 2-succinyl-5-enolpyru 98.2 4.9E-06 1.1E-10 100.6 9.7 60 190-263 424-483 (568)
191 TIGR03336 IOR_alpha indolepyru 98.2 1.1E-05 2.4E-10 98.1 12.4 119 189-389 401-529 (595)
192 cd06586 TPP_enzyme_PYR Pyrimid 98.1 1.7E-05 3.6E-10 78.8 11.4 120 561-690 33-153 (154)
193 PRK11869 2-oxoacid ferredoxin 98.1 1.8E-05 3.9E-10 86.9 11.4 59 192-262 61-119 (280)
194 PRK11867 2-oxoglutarate ferred 98.1 2.1E-05 4.5E-10 87.0 11.9 60 191-263 69-129 (286)
195 KOG0238|consensus 98.0 4E-06 8.6E-11 95.3 4.5 64 863-926 607-670 (670)
196 PRK09627 oorA 2-oxoglutarate-a 97.9 0.0011 2.3E-08 76.3 22.3 227 561-819 46-348 (375)
197 COG3961 Pyruvate decarboxylase 97.8 8E-05 1.7E-09 86.0 10.7 64 190-266 410-473 (557)
198 KOG1185|consensus 97.7 0.0003 6.6E-09 80.4 13.1 69 176-261 419-487 (571)
199 PLN02980 2-oxoglutarate decarb 97.5 0.00022 4.8E-09 95.8 9.8 60 190-263 758-821 (1655)
200 cd06848 GCS_H Glycine cleavage 97.5 0.00019 4.2E-09 66.4 6.0 49 867-915 30-79 (96)
201 TIGR03710 OAFO_sf 2-oxoacid:ac 97.5 0.0064 1.4E-07 73.6 20.4 227 561-818 236-537 (562)
202 TIGR03077 not_gcvH glycine cle 97.5 9.9E-05 2.1E-09 70.0 3.9 40 874-913 39-78 (110)
203 PRK08366 vorA 2-ketoisovalerat 97.3 0.0095 2.1E-07 68.8 18.7 206 570-807 56-321 (390)
204 PRK13380 glycine cleavage syst 97.3 0.0003 6.5E-09 70.0 5.6 49 866-914 44-93 (144)
205 KOG0368|consensus 97.3 0.00028 6.1E-09 88.4 6.4 65 862-927 690-754 (2196)
206 PRK01202 glycine cleavage syst 97.3 0.00044 9.5E-09 67.5 6.5 54 874-927 46-106 (127)
207 PRK00624 glycine cleavage syst 97.2 0.00074 1.6E-08 64.5 6.2 36 874-909 41-76 (114)
208 KOG1184|consensus 97.1 0.0023 4.9E-08 74.1 10.8 64 189-265 413-476 (561)
209 TIGR00527 gcvH glycine cleavag 97.0 0.001 2.2E-08 64.9 5.2 40 874-913 45-84 (127)
210 PF13533 Biotin_lipoyl_2: Biot 97.0 0.0012 2.7E-08 53.6 4.7 35 894-928 2-36 (50)
211 PRK09783 copper/silver efflux 96.9 0.0024 5.2E-08 74.4 8.2 63 865-927 131-242 (409)
212 KOG0451|consensus 96.8 0.21 4.4E-06 58.4 22.3 130 198-397 290-432 (913)
213 PRK08367 porA pyruvate ferredo 96.8 0.051 1.1E-06 63.0 18.0 210 563-807 51-323 (394)
214 TIGR00998 8a0101 efflux pump m 96.7 0.003 6.5E-08 71.1 6.9 33 895-927 205-237 (334)
215 PRK10559 p-hydroxybenzoic acid 96.6 0.0034 7.4E-08 70.4 6.7 64 864-927 54-187 (310)
216 PRK10476 multidrug resistance 96.5 0.0041 9E-08 70.7 6.7 34 894-927 208-241 (346)
217 TIGR01730 RND_mfp RND family e 96.5 0.0032 6.9E-08 70.1 5.5 64 864-927 33-167 (322)
218 COG4231 Indolepyruvate ferredo 96.5 0.011 2.3E-07 70.5 9.7 118 190-389 427-553 (640)
219 COG3962 Acetolactate synthase 96.3 0.034 7.4E-07 63.8 11.8 118 187-390 440-575 (617)
220 PRK12784 hypothetical protein; 96.2 0.017 3.7E-07 50.5 7.1 66 863-928 11-77 (84)
221 PRK15136 multidrug efflux syst 96.1 0.0089 1.9E-07 69.2 6.5 33 895-927 216-248 (390)
222 PRK03598 putative efflux pump 96.0 0.01 2.2E-07 67.0 6.3 33 895-927 204-236 (331)
223 COG1013 PorB Pyruvate:ferredox 95.9 0.056 1.2E-06 60.2 11.5 59 187-259 64-125 (294)
224 PRK09578 periplasmic multidrug 95.9 0.011 2.4E-07 68.2 6.2 63 864-926 70-205 (385)
225 PRK05889 putative acetyl-CoA c 95.9 0.012 2.6E-07 51.3 4.8 33 895-927 3-35 (71)
226 PF01597 GCV_H: Glycine cleava 95.6 0.025 5.5E-07 54.8 6.2 39 873-911 39-77 (122)
227 PRK15030 multidrug efflux syst 95.4 0.025 5.4E-07 65.7 6.4 62 864-925 72-206 (397)
228 COG4231 Indolepyruvate ferredo 95.4 0.51 1.1E-05 56.7 16.9 228 563-830 58-330 (640)
229 PRK09859 multidrug efflux syst 95.4 0.027 5.9E-07 65.0 6.5 63 864-926 68-203 (385)
230 TIGR02176 pyruv_ox_red pyruvat 95.3 0.64 1.4E-05 61.1 19.3 45 725-770 264-309 (1165)
231 COG0509 GcvH Glycine cleavage 95.2 0.02 4.4E-07 55.6 4.1 39 873-911 47-85 (131)
232 TIGR03309 matur_yqeB selenium- 95.2 0.043 9.2E-07 59.3 6.9 57 866-927 172-228 (256)
233 PRK06748 hypothetical protein; 95.1 0.032 7E-07 50.3 4.7 32 896-927 6-37 (83)
234 PRK11578 macrolide transporter 94.8 0.046 1E-06 62.8 6.3 31 896-926 185-218 (370)
235 PRK11556 multidrug efflux syst 94.7 0.043 9.4E-07 64.1 5.8 63 864-926 94-229 (415)
236 COG0511 AccB Biotin carboxyl c 94.6 0.042 9.2E-07 54.6 4.7 35 893-927 69-103 (140)
237 PF13375 RnfC_N: RnfC Barrel s 94.5 0.055 1.2E-06 50.7 4.7 47 864-911 37-83 (101)
238 COG0567 SucA 2-oxoglutarate de 94.3 1.4 3.1E-05 55.1 17.5 231 513-770 583-830 (906)
239 cd06850 biotinyl_domain The bi 94.2 0.064 1.4E-06 45.2 4.3 32 896-927 1-32 (67)
240 PRK08225 acetyl-CoA carboxylas 94.1 0.082 1.8E-06 45.8 4.9 32 896-927 3-34 (70)
241 PRK13030 2-oxoacid ferredoxin 94.1 0.21 4.5E-06 64.8 10.3 85 190-292 467-558 (1159)
242 KOG4166|consensus 94.0 0.68 1.5E-05 52.9 12.8 127 190-392 523-649 (675)
243 TIGR02971 heterocyst_DevB ABC 93.8 0.12 2.5E-06 58.3 6.6 31 896-927 206-236 (327)
244 PF13533 Biotin_lipoyl_2: Biot 93.8 0.057 1.2E-06 43.9 3.0 30 864-893 9-38 (50)
245 PF12700 HlyD_2: HlyD family s 93.7 0.05 1.1E-06 60.7 3.6 26 864-890 28-53 (328)
246 PF02776 TPP_enzyme_N: Thiamin 93.6 1.5 3.2E-05 44.8 13.8 121 563-691 40-161 (172)
247 PRK09193 indolepyruvate ferred 93.0 0.47 1E-05 61.6 10.7 86 189-292 479-571 (1165)
248 cd03377 TPP_PFOR_PNO Thiamine 92.2 0.43 9.2E-06 54.5 8.1 27 363-390 241-267 (365)
249 PRK06549 acetyl-CoA carboxylas 91.9 0.23 5E-06 48.7 4.8 34 894-927 61-94 (130)
250 cd07034 TPP_PYR_PFOR_IOR-alpha 91.8 2.2 4.8E-05 42.7 12.0 118 562-689 41-158 (160)
251 PF00364 Biotin_lipoyl: Biotin 91.8 0.19 4E-06 44.3 3.6 33 896-928 2-40 (74)
252 PRK13029 2-oxoacid ferredoxin 91.6 0.87 1.9E-05 59.1 10.7 85 190-292 494-585 (1186)
253 PRK07051 hypothetical protein; 91.1 0.28 6E-06 43.9 4.1 35 893-927 2-43 (80)
254 cd07035 TPP_PYR_POX_like Pyrim 91.0 2 4.3E-05 42.8 10.7 119 563-690 35-154 (155)
255 cd06253 M14_ASTE_ASPA_like_3 A 90.9 0.64 1.4E-05 52.0 7.8 60 864-925 235-297 (298)
256 PRK05641 putative acetyl-CoA c 90.9 0.32 7E-06 49.1 4.8 33 895-927 85-117 (153)
257 cd06251 M14_ASTE_ASPA_like_1 A 90.6 0.78 1.7E-05 51.0 7.9 59 865-925 226-286 (287)
258 COG3608 Predicted deacylase [G 90.4 0.65 1.4E-05 52.3 7.0 62 863-926 261-325 (331)
259 PRK10476 multidrug resistance 90.3 0.38 8.2E-06 54.8 5.3 39 887-927 43-81 (346)
260 cd06250 M14_PaAOTO_like An unc 90.0 0.77 1.7E-05 52.8 7.5 61 863-925 294-358 (359)
261 cd06252 M14_ASTE_ASPA_like_2 A 89.8 0.97 2.1E-05 51.0 8.0 63 863-927 249-315 (316)
262 TIGR00998 8a0101 efflux pump m 89.5 0.37 8E-06 54.3 4.4 35 894-928 42-76 (334)
263 COG0674 PorA Pyruvate:ferredox 89.2 40 0.00086 39.0 20.5 106 559-676 44-150 (365)
264 PRK11556 multidrug efflux syst 89.0 0.74 1.6E-05 53.9 6.5 59 868-927 62-120 (415)
265 PRK09859 multidrug efflux syst 88.8 0.81 1.7E-05 52.9 6.6 56 872-928 40-95 (385)
266 TIGR02994 ectoine_eutE ectoine 88.4 1.3 2.8E-05 50.3 7.7 60 864-925 261-324 (325)
267 KOG3373|consensus 87.5 0.44 9.5E-06 47.7 2.9 58 852-913 71-128 (172)
268 PRK09578 periplasmic multidrug 87.2 1.2 2.5E-05 51.6 6.6 56 872-928 42-97 (385)
269 TIGR01235 pyruv_carbox pyruvat 87.2 0.88 1.9E-05 59.6 6.1 61 866-927 1047-1107(1143)
270 PRK11578 macrolide transporter 86.9 1.1 2.4E-05 51.5 6.2 42 885-927 53-94 (370)
271 PRK15136 multidrug efflux syst 86.8 0.7 1.5E-05 53.7 4.5 35 894-928 61-95 (390)
272 TIGR01730 RND_mfp RND family e 86.7 0.99 2.1E-05 50.2 5.5 40 887-927 20-59 (322)
273 PRK10559 p-hydroxybenzoic acid 86.5 0.76 1.6E-05 51.7 4.5 33 895-927 48-80 (310)
274 TIGR01000 bacteriocin_acc bact 86.4 0.98 2.1E-05 53.5 5.6 36 893-928 58-93 (457)
275 TIGR01936 nqrA NADH:ubiquinone 86.2 0.88 1.9E-05 53.7 4.9 46 864-910 36-81 (447)
276 TIGR01843 type_I_hlyD type I s 86.2 0.95 2.1E-05 52.4 5.2 41 887-927 36-76 (423)
277 PRK03598 putative efflux pump 85.5 0.82 1.8E-05 51.7 4.1 34 894-927 43-76 (331)
278 PF01855 POR_N: Pyruvate flavo 85.3 5 0.00011 43.3 9.7 116 565-690 38-153 (230)
279 TIGR03794 NHPM_micro_HlyD NHPM 84.9 1.2 2.6E-05 52.1 5.3 35 894-928 58-92 (421)
280 cd06254 M14_ASTE_ASPA_like_4 A 84.9 1.7 3.8E-05 48.3 6.2 58 863-922 228-287 (288)
281 PRK15030 multidrug efflux syst 84.8 1.7 3.6E-05 50.6 6.3 42 885-927 57-98 (397)
282 PRK05352 Na(+)-translocating N 83.9 1.2 2.7E-05 52.5 4.7 45 865-910 38-82 (448)
283 PRK09783 copper/silver efflux 83.5 2.1 4.6E-05 50.0 6.5 45 883-927 111-157 (409)
284 cd02001 TPP_ComE_PpyrDC Thiami 83.4 17 0.00037 36.6 12.2 109 559-677 32-144 (157)
285 PRK13030 2-oxoacid ferredoxin 83.1 50 0.0011 43.7 18.9 222 563-819 74-353 (1159)
286 PRK09439 PTS system glucose-sp 83.1 2.1 4.6E-05 44.0 5.4 51 874-927 36-125 (169)
287 TIGR00531 BCCP acetyl-CoA carb 82.9 1.5 3.3E-05 44.4 4.3 33 895-927 81-120 (156)
288 PRK14042 pyruvate carboxylase 82.8 1.4 3.1E-05 53.7 4.8 32 896-927 527-558 (596)
289 PF05896 NQRA: Na(+)-transloca 82.7 1.8 3.8E-05 47.3 4.9 44 866-912 38-83 (257)
290 PF09891 DUF2118: Uncharacteri 81.9 2.3 5E-05 42.7 5.1 47 864-910 87-134 (150)
291 TIGR02418 acolac_catab acetola 81.4 9.8 0.00021 46.1 11.3 119 564-692 38-158 (539)
292 TIGR02176 pyruv_ox_red pyruvat 81.2 6.6 0.00014 51.9 10.3 37 221-260 952-989 (1165)
293 PLN02983 biotin carboxyl carri 81.1 2 4.2E-05 46.9 4.5 32 896-927 199-237 (274)
294 PRK09193 indolepyruvate ferred 81.0 54 0.0012 43.3 18.0 215 563-819 82-361 (1165)
295 cd00210 PTS_IIA_glc PTS_IIA, P 80.9 3.2 7E-05 40.5 5.6 19 909-927 85-103 (124)
296 TIGR00830 PTBA PTS system, glu 80.9 3.1 6.8E-05 40.4 5.5 19 909-927 85-103 (121)
297 PF00358 PTS_EIIA_1: phosphoen 80.8 2.3 5E-05 42.0 4.6 43 882-927 30-107 (132)
298 COG4770 Acetyl/propionyl-CoA c 80.6 1.7 3.8E-05 51.6 4.2 34 894-927 575-608 (645)
299 COG2190 NagE Phosphotransferas 80.5 1.9 4.2E-05 43.5 3.9 44 882-928 33-111 (156)
300 TIGR01945 rnfC electron transp 79.9 1.8 3.8E-05 51.2 4.1 44 865-909 39-82 (435)
301 TIGR00999 8a0102 Membrane Fusi 79.3 2.3 5E-05 46.0 4.5 33 895-927 89-121 (265)
302 cd02014 TPP_POX Thiamine pyrop 78.9 39 0.00085 34.6 13.2 121 560-691 39-172 (178)
303 PRK06302 acetyl-CoA carboxylas 78.5 2.6 5.7E-05 42.6 4.3 33 895-927 80-119 (155)
304 TIGR01108 oadA oxaloacetate de 78.3 2.5 5.3E-05 51.7 4.8 33 895-927 518-550 (582)
305 PRK14040 oxaloacetate decarbox 76.6 2.8 6.2E-05 51.3 4.6 34 894-927 524-557 (593)
306 COG1566 EmrA Multidrug resista 75.7 2.8 6E-05 48.0 4.0 35 894-928 53-87 (352)
307 COG0845 AcrA Membrane-fusion p 75.6 6.6 0.00014 43.6 7.0 42 885-927 58-99 (372)
308 PRK05035 electron transport co 75.4 4.4 9.5E-05 50.5 5.9 43 866-909 46-88 (695)
309 TIGR03457 sulphoacet_xsc sulfo 75.3 16 0.00035 44.7 10.7 119 564-692 41-160 (579)
310 PRK09282 pyruvate carboxylase 75.2 3.3 7.2E-05 50.7 4.7 34 894-927 522-555 (592)
311 COG4656 RnfC Predicted NADH:ub 74.2 2.9 6.3E-05 49.5 3.7 44 864-909 40-83 (529)
312 TIGR03794 NHPM_micro_HlyD NHPM 74.1 3.4 7.4E-05 48.4 4.3 32 895-926 254-285 (421)
313 cd07033 TPP_PYR_DXS_TK_like Py 73.9 34 0.00075 34.3 11.0 51 235-290 75-129 (156)
314 PRK08617 acetolactate synthase 73.6 25 0.00053 42.8 11.7 120 563-692 43-164 (552)
315 PRK08322 acetolactate synthase 73.5 24 0.00052 42.8 11.5 119 564-692 40-160 (547)
316 PRK07525 sulfoacetaldehyde ace 72.4 18 0.00038 44.4 10.1 120 563-692 44-164 (588)
317 cd01460 vWA_midasin VWA_Midasi 72.1 46 0.001 36.8 12.2 70 222-292 166-242 (266)
318 PF07831 PYNP_C: Pyrimidine nu 71.4 4.4 9.5E-05 36.0 3.3 30 863-892 28-57 (75)
319 cd07036 TPP_PYR_E1-PDHc-beta_l 71.3 36 0.00078 34.9 10.5 65 221-291 68-141 (167)
320 KOG1145|consensus 71.1 34 0.00075 41.2 11.3 119 210-396 217-344 (683)
321 PRK13029 2-oxoacid ferredoxin 71.1 1.5E+02 0.0033 39.4 18.2 70 726-819 286-364 (1186)
322 cd07039 TPP_PYR_POX Pyrimidine 70.3 49 0.0011 33.6 11.2 118 564-691 40-158 (164)
323 PRK06112 acetolactate synthase 69.5 30 0.00064 42.4 11.2 120 563-692 50-171 (578)
324 PRK07092 benzoylformate decarb 69.1 35 0.00075 41.3 11.5 121 564-692 50-171 (530)
325 TIGR01843 type_I_hlyD type I s 68.5 5.5 0.00012 46.1 4.4 34 894-927 271-305 (423)
326 PRK05858 hypothetical protein; 67.5 33 0.00071 41.7 10.9 120 563-692 43-164 (542)
327 cd06255 M14_ASTE_ASPA_like_5 A 67.5 12 0.00026 41.9 6.5 45 864-908 237-283 (293)
328 COG1726 NqrA Na+-transporting 67.5 5.8 0.00012 44.8 3.9 42 870-912 42-83 (447)
329 TIGR02712 urea_carbox urea car 67.4 5.9 0.00013 52.6 4.7 33 895-927 1133-1165(1201)
330 COG1566 EmrA Multidrug resista 67.4 5.1 0.00011 45.9 3.6 34 894-927 208-241 (352)
331 PRK06965 acetolactate synthase 67.0 41 0.00088 41.3 11.6 120 563-692 60-181 (587)
332 cd07038 TPP_PYR_PDC_IPDC_like 66.9 52 0.0011 33.3 10.6 119 564-690 37-161 (162)
333 PRK07586 hypothetical protein; 66.5 49 0.0011 39.8 12.0 119 564-692 41-161 (514)
334 cd02003 TPP_IolD Thiamine pyro 66.2 1.2E+02 0.0027 31.7 13.7 120 560-690 36-182 (205)
335 PRK12999 pyruvate carboxylase; 66.0 6.4 0.00014 52.0 4.6 34 894-927 1076-1109(1146)
336 PRK12474 hypothetical protein; 65.0 66 0.0014 38.8 12.8 119 564-692 45-165 (518)
337 KOG0369|consensus 64.2 5.3 0.00011 48.3 3.0 34 894-927 1106-1139(1176)
338 TIGR01504 glyox_carbo_lig glyo 62.9 80 0.0017 38.8 13.1 120 564-692 43-164 (588)
339 cd02004 TPP_BZL_OCoD_HPCL Thia 62.9 55 0.0012 33.1 10.0 113 560-677 36-161 (172)
340 KOG1185|consensus 62.5 31 0.00068 40.8 8.7 163 563-740 52-233 (571)
341 PF02775 TPP_enzyme_C: Thiamin 62.5 1.3E+02 0.0029 29.6 12.5 112 560-677 16-145 (153)
342 PRK07418 acetolactate synthase 62.3 44 0.00095 41.3 10.7 118 564-691 62-181 (616)
343 COG1038 PycA Pyruvate carboxyl 62.0 5.5 0.00012 49.2 2.7 32 896-927 1081-1112(1149)
344 PF04952 AstE_AspA: Succinylgl 61.8 20 0.00043 39.6 7.0 62 864-927 226-291 (292)
345 PRK08266 hypothetical protein; 61.6 52 0.0011 39.9 11.1 122 563-692 44-168 (542)
346 cd02010 TPP_ALS Thiamine pyrop 60.0 1.4E+02 0.003 30.7 12.3 122 560-691 36-169 (177)
347 cd06663 Biotinyl_lipoyl_domain 59.9 13 0.00029 31.9 4.2 27 901-927 12-38 (73)
348 PRK12784 hypothetical protein; 59.6 9.8 0.00021 33.8 3.1 37 891-927 1-38 (84)
349 TIGR03309 matur_yqeB selenium- 59.0 11 0.00024 41.1 4.1 35 892-927 162-196 (256)
350 TIGR02720 pyruv_oxi_spxB pyruv 58.3 79 0.0017 38.8 11.9 120 563-692 39-159 (575)
351 PRK06725 acetolactate synthase 58.2 67 0.0015 39.3 11.3 120 563-692 53-174 (570)
352 PTZ00144 dihydrolipoamide succ 58.1 10 0.00022 44.5 4.0 28 901-928 57-84 (418)
353 PF00529 HlyD: HlyD family sec 58.1 5.6 0.00012 43.8 1.8 27 864-890 8-34 (305)
354 COG4072 Uncharacterized protei 57.6 19 0.00042 35.3 5.0 46 864-909 98-144 (161)
355 TIGR03845 sulfopyru_alph sulfo 57.5 87 0.0019 31.7 10.1 32 658-690 122-153 (157)
356 PRK08978 acetolactate synthase 57.0 53 0.0012 39.9 10.1 119 564-692 40-160 (548)
357 PRK08199 thiamine pyrophosphat 57.0 88 0.0019 38.1 12.0 119 564-692 48-168 (557)
358 PLN02226 2-oxoglutarate dehydr 56.5 11 0.00025 44.6 4.1 29 900-928 103-131 (463)
359 TIGR01000 bacteriocin_acc bact 55.6 12 0.00025 44.6 4.0 33 894-926 316-349 (457)
360 COG3960 Glyoxylate carboligase 55.4 27 0.00058 39.3 6.3 57 190-259 418-474 (592)
361 PRK10255 PTS system N-acetyl g 55.1 16 0.00035 45.2 5.2 21 907-927 583-603 (648)
362 TIGR00164 PS_decarb_rel phosph 54.9 17 0.00037 38.0 4.7 48 872-923 135-182 (189)
363 cd06586 TPP_enzyme_PYR Pyrimid 54.5 80 0.0017 30.8 9.3 56 228-291 68-124 (154)
364 cd02013 TPP_Xsc_like Thiamine 54.2 1.3E+02 0.0028 31.4 11.1 124 560-691 41-178 (196)
365 COG2190 NagE Phosphotransferas 53.8 16 0.00034 37.1 4.0 80 835-926 67-154 (156)
366 PRK07524 hypothetical protein; 53.6 91 0.002 37.7 11.3 121 564-692 41-164 (535)
367 cd06849 lipoyl_domain Lipoyl d 53.6 21 0.00045 29.4 4.2 30 898-927 10-39 (74)
368 PF01551 Peptidase_M23: Peptid 53.2 17 0.00037 33.1 3.9 22 905-926 52-73 (96)
369 PRK07064 hypothetical protein; 52.5 1E+02 0.0023 37.3 11.6 121 564-692 43-166 (544)
370 PRK05305 phosphatidylserine de 51.6 21 0.00045 37.9 4.7 47 872-922 155-201 (206)
371 PRK09824 PTS system beta-gluco 51.4 19 0.00041 44.5 5.0 59 866-928 487-584 (627)
372 KOG0238|consensus 51.1 13 0.00028 44.0 3.2 34 894-927 601-634 (670)
373 smart00115 CASc Caspase, inter 50.9 35 0.00075 37.0 6.4 110 252-394 10-130 (241)
374 cd06255 M14_ASTE_ASPA_like_5 A 50.5 19 0.00041 40.3 4.4 34 894-928 231-264 (293)
375 PRK11269 glyoxylate carboligas 50.4 1.4E+02 0.003 36.8 12.3 119 564-692 44-165 (591)
376 cd02002 TPP_BFDC Thiamine pyro 50.2 2.5E+02 0.0053 28.4 12.3 110 561-677 39-168 (178)
377 TIGR01995 PTS-II-ABC-beta PTS 50.2 22 0.00047 44.0 5.2 60 865-928 470-568 (610)
378 cd03371 TPP_PpyrDC Thiamine py 49.8 2.3E+02 0.0051 29.4 12.2 118 561-691 40-162 (188)
379 PRK07979 acetolactate synthase 49.6 1.1E+02 0.0023 37.5 11.1 119 564-692 44-164 (574)
380 CHL00099 ilvB acetohydroxyacid 48.7 62 0.0013 39.7 8.9 119 564-692 53-173 (585)
381 PF04273 DUF442: Putative phos 48.7 1.1E+02 0.0023 29.3 8.6 25 365-389 71-95 (110)
382 TIGR03297 Ppyr-DeCO2ase phosph 48.4 2.9E+02 0.0064 31.9 13.7 117 562-691 214-335 (361)
383 PLN02573 pyruvate decarboxylas 48.4 78 0.0017 38.8 9.7 119 564-692 56-182 (578)
384 cd00032 CASc Caspase, interleu 48.3 52 0.0011 35.6 7.3 109 252-395 11-132 (243)
385 TIGR03254 oxalate_oxc oxalyl-C 47.2 1.3E+02 0.0029 36.5 11.4 122 564-692 42-164 (554)
386 smart00861 Transket_pyr Transk 46.9 1.5E+02 0.0032 29.8 10.0 50 236-290 86-138 (168)
387 PRK09107 acetolactate synthase 46.7 3E+02 0.0065 33.9 14.4 119 563-692 50-171 (595)
388 cd07037 TPP_PYR_MenD Pyrimidin 46.0 2.1E+02 0.0045 29.2 10.8 116 564-689 37-160 (162)
389 cd06253 M14_ASTE_ASPA_like_3 A 45.9 23 0.0005 39.7 4.2 33 894-927 229-261 (298)
390 TIGR00204 dxs 1-deoxy-D-xylulo 45.7 1.6E+02 0.0034 36.7 11.7 64 221-291 376-442 (617)
391 PRK06546 pyruvate dehydrogenas 45.7 2E+02 0.0043 35.3 12.6 119 562-691 398-529 (578)
392 PRK08527 acetolactate synthase 45.0 1.5E+02 0.0032 36.3 11.3 119 564-692 43-163 (563)
393 PRK07282 acetolactate synthase 44.9 1.3E+02 0.0028 36.8 10.8 119 564-692 50-170 (566)
394 COG1165 MenD 2-succinyl-6-hydr 44.9 86 0.0019 37.9 8.7 53 197-263 428-480 (566)
395 cd02006 TPP_Gcl Thiamine pyrop 44.9 1.6E+02 0.0034 30.8 10.1 126 560-691 45-193 (202)
396 cd06251 M14_ASTE_ASPA_like_1 A 44.8 33 0.00071 38.2 5.2 35 892-927 217-251 (287)
397 PRK12571 1-deoxy-D-xylulose-5- 44.7 1.6E+02 0.0034 36.8 11.5 63 222-291 386-451 (641)
398 TIGR03394 indol_phenyl_DC indo 44.6 85 0.0018 38.1 9.1 118 564-692 40-165 (535)
399 cd02009 TPP_SHCHC_synthase Thi 44.0 2.7E+02 0.0059 28.3 11.5 110 560-677 39-164 (175)
400 cd06254 M14_ASTE_ASPA_like_4 A 43.5 28 0.00062 38.7 4.4 34 893-927 222-255 (288)
401 cd06250 M14_PaAOTO_like An unc 42.5 29 0.00064 40.0 4.4 31 896-927 291-321 (359)
402 PF04055 Radical_SAM: Radical 42.3 3.1E+02 0.0068 26.2 12.3 60 222-291 46-106 (166)
403 PRK08611 pyruvate oxidase; Pro 42.2 1.6E+02 0.0035 36.0 11.1 119 564-692 45-164 (576)
404 PF13437 HlyD_3: HlyD family s 42.2 38 0.00083 31.1 4.4 24 866-889 8-31 (105)
405 PRK06466 acetolactate synthase 41.8 1.7E+02 0.0036 35.9 11.1 119 564-692 44-164 (574)
406 cd06252 M14_ASTE_ASPA_like_2 A 40.6 43 0.00094 37.8 5.4 34 893-927 243-276 (316)
407 TIGR01995 PTS-II-ABC-beta PTS 40.0 37 0.00081 41.9 5.1 61 865-925 542-609 (610)
408 cd01452 VWA_26S_proteasome_sub 39.8 72 0.0016 33.4 6.4 42 207-249 95-137 (187)
409 PF04430 DUF498: Protein of un 39.7 13 0.00029 35.2 1.0 35 725-760 53-89 (110)
410 PRK08155 acetolactate synthase 39.2 1.9E+02 0.0041 35.3 11.0 120 563-692 52-173 (564)
411 TIGR03846 sulfopy_beta sulfopy 39.2 4.5E+02 0.0098 27.1 12.4 116 561-691 34-155 (181)
412 PRK09439 PTS system glucose-sp 39.2 63 0.0014 33.3 5.7 26 866-891 101-126 (169)
413 cd02005 TPP_PDC_IPDC Thiamine 38.8 4.5E+02 0.0098 27.0 15.1 123 561-691 39-173 (183)
414 PRK06456 acetolactate synthase 38.8 2E+02 0.0042 35.2 11.1 119 564-692 45-165 (572)
415 PRK07789 acetolactate synthase 38.8 2.2E+02 0.0048 35.2 11.6 119 564-692 71-191 (612)
416 cd00568 TPP_enzymes Thiamine p 38.6 2.3E+02 0.0051 27.9 9.9 112 562-677 36-158 (168)
417 COG0021 TktA Transketolase [Ca 38.6 1.3E+02 0.0029 37.0 9.1 50 236-290 440-492 (663)
418 TIGR02994 ectoine_eutE ectoine 38.6 33 0.00072 39.0 4.1 31 896-927 257-287 (325)
419 TIGR02645 ARCH_P_rylase putati 38.4 43 0.00093 40.1 5.0 37 890-926 409-469 (493)
420 PRK06276 acetolactate synthase 38.4 2.7E+02 0.0058 34.2 12.2 119 564-692 40-160 (586)
421 PRK09259 putative oxalyl-CoA d 38.3 2.2E+02 0.0047 34.9 11.3 122 563-692 48-171 (569)
422 TIGR02177 PorB_KorB 2-oxoacid: 38.3 6E+02 0.013 28.5 13.7 30 648-677 146-175 (287)
423 PF02779 Transket_pyr: Transke 38.2 3E+02 0.0064 28.1 10.7 52 235-291 90-144 (178)
424 KOG0368|consensus 38.2 33 0.00073 45.4 4.2 52 876-927 667-718 (2196)
425 COG3608 Predicted deacylase [G 38.1 45 0.00098 37.9 4.9 38 887-927 251-288 (331)
426 PRK08979 acetolactate synthase 37.5 2.8E+02 0.0061 33.9 12.2 119 564-692 44-164 (572)
427 PRK04350 thymidine phosphoryla 37.5 45 0.00098 39.9 5.0 38 889-926 400-461 (490)
428 TIGR00118 acolac_lg acetolacta 37.4 2.1E+02 0.0046 34.8 11.0 119 564-692 41-161 (558)
429 PF03358 FMN_red: NADPH-depend 36.1 1.1E+02 0.0023 30.1 6.8 76 736-817 16-92 (152)
430 PRK08273 thiamine pyrophosphat 35.6 1.4E+02 0.003 36.8 9.1 121 563-692 43-164 (597)
431 TIGR03327 AMP_phos AMP phospho 35.5 49 0.0011 39.7 4.9 37 890-926 410-470 (500)
432 PRK06882 acetolactate synthase 35.3 2.4E+02 0.0052 34.5 11.1 119 564-692 44-164 (574)
433 PLN02470 acetolactate synthase 35.1 2.4E+02 0.0053 34.6 11.1 120 563-692 52-173 (585)
434 PRK14844 bifunctional DNA-dire 34.9 53 0.0012 46.5 5.6 21 869-889 2422-2442(2836)
435 PRK09124 pyruvate dehydrogenas 34.8 4.2E+02 0.009 32.4 13.0 121 561-691 397-529 (574)
436 PF07831 PYNP_C: Pyrimidine nu 34.7 38 0.00083 30.1 3.0 26 899-926 29-54 (75)
437 TIGR00232 tktlase_bact transke 34.6 2.3E+02 0.005 35.5 10.8 51 236-291 434-487 (653)
438 TIGR02643 T_phosphoryl thymidi 34.3 53 0.0011 38.8 4.8 36 891-926 336-402 (437)
439 TIGR02876 spore_yqfD sporulati 34.1 29 0.00062 40.4 2.7 31 894-924 186-223 (382)
440 PRK07449 2-succinyl-5-enolpyru 33.8 1.7E+02 0.0037 35.7 9.4 120 564-692 49-174 (568)
441 PF02749 QRPTase_N: Quinolinat 33.2 35 0.00075 31.0 2.5 25 866-890 44-68 (88)
442 cd02018 TPP_PFOR Thiamine pyro 33.1 6.5E+02 0.014 27.1 15.3 114 561-677 51-192 (237)
443 TIGR02691 arsC_pI258_fam arsen 33.0 62 0.0013 31.6 4.4 54 798-855 71-125 (129)
444 PRK05820 deoA thymidine phosph 33.0 56 0.0012 38.7 4.8 36 891-926 337-403 (440)
445 TIGR02644 Y_phosphoryl pyrimid 32.9 59 0.0013 38.2 4.9 37 890-926 329-396 (405)
446 cd02008 TPP_IOR_alpha Thiamine 32.4 4.1E+02 0.0089 27.1 10.6 103 573-677 50-166 (178)
447 cd02015 TPP_AHAS Thiamine pyro 31.9 5.7E+02 0.012 26.1 12.2 121 561-691 39-173 (186)
448 PRK09824 PTS system beta-gluco 31.8 68 0.0015 39.8 5.5 78 835-925 540-625 (627)
449 TIGR00173 menD 2-succinyl-5-en 31.8 3.5E+02 0.0076 31.8 11.3 119 564-691 40-165 (432)
450 PTZ00182 3-methyl-2-oxobutanat 31.6 4.2E+02 0.0092 30.5 11.6 22 364-386 181-202 (355)
451 PF06898 YqfD: Putative stage 31.6 45 0.00097 38.9 3.7 34 891-924 186-226 (385)
452 PRK06078 pyrimidine-nucleoside 31.2 63 0.0014 38.2 4.8 18 909-926 381-398 (434)
453 cd03375 TPP_OGFOR Thiamine pyr 31.2 5.6E+02 0.012 26.6 11.6 110 574-689 51-181 (193)
454 PRK06163 hypothetical protein; 31.1 6.5E+02 0.014 26.5 13.1 117 561-691 49-172 (202)
455 PRK12315 1-deoxy-D-xylulose-5- 30.9 3.2E+02 0.0069 33.8 11.0 50 236-290 357-408 (581)
456 PRK05444 1-deoxy-D-xylulose-5- 30.6 3.7E+02 0.0081 33.1 11.6 64 221-291 345-411 (580)
457 PF02666 PS_Dcarbxylase: Phosp 30.0 54 0.0012 34.5 3.7 62 860-923 139-201 (202)
458 PRK06457 pyruvate dehydrogenas 29.6 6E+02 0.013 30.9 13.2 120 561-690 385-517 (549)
459 PRK05899 transketolase; Review 29.2 3.2E+02 0.0069 34.0 10.7 49 235-290 404-457 (624)
460 PRK06048 acetolactate synthase 29.0 3.5E+02 0.0075 33.0 11.0 120 563-692 46-167 (561)
461 TIGR00830 PTBA PTS system, glu 28.6 54 0.0012 31.9 3.1 28 865-892 78-105 (121)
462 COG0845 AcrA Membrane-fusion p 28.5 42 0.0009 37.2 2.7 27 864-890 73-99 (372)
463 PRK07710 acetolactate synthase 28.4 3.4E+02 0.0074 33.2 10.8 119 563-691 54-174 (571)
464 KOG0557|consensus 28.0 47 0.001 39.1 3.0 28 901-928 51-78 (470)
465 PF05896 NQRA: Na(+)-transloca 27.3 38 0.00081 37.2 2.0 29 896-924 31-59 (257)
466 PRK10255 PTS system N-acetyl g 27.3 80 0.0017 39.3 5.0 28 865-892 578-605 (648)
467 PRK14875 acetoin dehydrogenase 26.8 55 0.0012 36.8 3.4 30 863-892 51-80 (371)
468 PRK06154 hypothetical protein; 26.5 5.4E+02 0.012 31.5 12.0 110 560-676 419-540 (565)
469 cd00210 PTS_IIA_glc PTS_IIA, P 26.2 63 0.0014 31.6 3.1 27 865-891 78-104 (124)
470 PLN02744 dihydrolipoyllysine-r 26.1 62 0.0014 39.4 3.7 28 901-928 125-152 (539)
471 TIGR03845 sulfopyru_alph sulfo 26.0 5.6E+02 0.012 25.9 10.1 33 220-256 58-91 (157)
472 PF02776 TPP_enzyme_N: Thiamin 25.9 6.9E+02 0.015 25.1 11.5 53 236-291 78-130 (172)
473 KOG0559|consensus 25.7 73 0.0016 36.4 3.8 29 862-890 120-148 (457)
474 PLN02582 1-deoxy-D-xylulose-5- 25.2 5.6E+02 0.012 32.3 11.8 63 222-291 423-488 (677)
475 PRK11866 2-oxoacid ferredoxin 24.9 5.9E+02 0.013 28.4 10.8 42 644-689 148-189 (279)
476 PLN02234 1-deoxy-D-xylulose-5- 24.0 5.2E+02 0.011 32.3 11.1 64 221-291 423-489 (641)
477 TIGR02690 resist_ArsH arsenica 23.9 1.8E+02 0.0039 31.3 6.3 63 742-816 49-111 (219)
478 cd03376 TPP_PFOR_porB_like Thi 23.6 9.4E+02 0.02 25.9 15.0 101 573-677 61-189 (235)
479 PRK02597 rpoC2 DNA-directed RN 23.5 1.8E+02 0.0038 39.2 7.2 36 871-906 405-447 (1331)
480 cd03028 GRX_PICOT_like Glutare 21.7 3.9E+02 0.0084 24.1 7.3 34 726-760 8-46 (90)
481 PRK11867 2-oxoglutarate ferred 21.5 7.5E+02 0.016 27.6 10.9 109 575-689 70-199 (286)
482 PF05673 DUF815: Protein of un 21.4 2.3E+02 0.0049 31.2 6.5 64 368-441 123-195 (249)
483 PLN02225 1-deoxy-D-xylulose-5- 21.0 7.2E+02 0.016 31.5 11.5 62 221-290 448-512 (701)
484 PF00358 PTS_EIIA_1: phosphoen 20.8 64 0.0014 31.9 2.0 29 865-893 82-110 (132)
485 TIGR03586 PseI pseudaminic aci 20.7 8.7E+02 0.019 27.8 11.3 56 360-427 141-196 (327)
486 CHL00144 odpB pyruvate dehydro 20.6 7.4E+02 0.016 28.2 10.8 23 364-387 150-172 (327)
487 PF01220 DHquinase_II: Dehydro 20.2 2.1E+02 0.0045 28.7 5.4 48 274-332 31-78 (140)
488 COG0532 InfB Translation initi 20.1 9.2E+02 0.02 29.3 11.6 68 210-288 71-138 (509)
489 cd06910 M14_ASTE_ASPA_like_7 A 20.1 1.3E+02 0.0027 33.3 4.4 46 873-925 226-272 (272)
No 1
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=7.2e-239 Score=1987.22 Aligned_cols=871 Identities=57% Similarity=1.015 Sum_probs=847.9
Q ss_pred CCC-CCCCCChhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHCCCcCCCCCCcccccCCCCCcCCCCCChhhHHHH
Q psy2375 1 MKE-TTKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNFDDDFPGNIKIEEH 79 (929)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 79 (929)
|.| ..+|+||+||||||+||++||+++|++||+|||++|+++|+.+|+.+|...+|||+||||.++++.+|++.+||++
T Consensus 1 ~~~~~~~d~dp~et~ewl~al~~v~~~~g~~ra~yl~~~~~~~a~~~gv~~p~~~~t~yintip~~~e~~~pgd~~lErr 80 (887)
T COG2609 1 MSESLLNDVDPIETQEWLDALESVIREEGPERAQYLLEQLLEYARKGGVSLPAGTTTDYINTIPTEDEPEYPGDLELERR 80 (887)
T ss_pred CcchhccCCChHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCccCCCcCCCCCcccccccccccCCCcHHHHHH
Confidence 344 5679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHH
Q psy2375 80 LQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEE 159 (929)
Q Consensus 80 ~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~ 159 (929)
+++.||||+++||.||++++.++|||+||++|+++||+++|||||+.+++++++|+||+|||+||++|||.||+||+|+|
T Consensus 81 ir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yArafLeGRlsee 160 (887)
T COG2609 81 IRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAFLEGRLTEE 160 (887)
T ss_pred HHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHHHhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHH
Q psy2375 160 QMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESIS 239 (929)
Q Consensus 160 ~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~e 239 (929)
||++|||++.|+|+||||||++||+||+|||||||+||++|||||+|+|||++||++++++++||||+||||||||+++|
T Consensus 161 qLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~g 240 (887)
T COG2609 161 QLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRG 240 (887)
T ss_pred HHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhccc
Q psy2375 240 EISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDG 319 (929)
Q Consensus 240 Al~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg 319 (929)
||.+|++++|||||||||||+|||||||++|+|++|||++.|+++||+||||+||+.||+||++|++|+|+++|++|+||
T Consensus 241 Ai~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dg 320 (887)
T COG2609 241 AITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDG 320 (887)
T ss_pred HHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCC
Q psy2375 320 EYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFG 399 (929)
Q Consensus 320 ~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~ 399 (929)
+||+|++++|+|+||||||+|||+++||++|||+|||.|+|||||+++||+||++|++++++||||+++||||||++.++
T Consensus 321 dyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~kg~PtvilA~TIKGyglg~~~ 400 (887)
T COG2609 321 DYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEHKGRPTVILAKTIKGYGLGEAA 400 (887)
T ss_pred hhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCceEEEEeeeccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHH
Q psy2375 400 EARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEA 479 (929)
Q Consensus 400 e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~ 479 (929)
|+.|.+||+|||+.+++++|||+|++|++|+|+|++||+.|.++++|.+|++++|++|+|++|+|+..+..++++|.++.
T Consensus 401 eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~ 480 (887)
T COG2609 401 EGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSD 480 (887)
T ss_pred cccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988755899999999
Q ss_pred HhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHh
Q psy2375 480 FKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYRE 559 (929)
Q Consensus 480 f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e 559 (929)
|..+++++ + +++||+|||+++|++|++|+++++|||||+||+++||||++||+++|||+|.||+|+|+|++++++|+|
T Consensus 481 ~~a~~~~~-g-~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~yke 558 (887)
T COG2609 481 FQALLKGQ-G-EEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKE 558 (887)
T ss_pred HHHHHhcc-C-ccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhh
Confidence 99998887 4 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCC
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGL 639 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~ 639 (929)
+..||++++||+|.|+|++|+||||+|++||.+|||||++||||||||++|++|++++|++++|+++||+||+|++++|+
T Consensus 559 a~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~ARgFLlgaTagrtTLngEGl 638 (887)
T COG2609 559 AESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDARGFLLGATAGRTTLNGEGL 638 (887)
T ss_pred CCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHHHHHHhhhhcceeEeecCCCceeCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC-CceEEEEEecCCCCCCCCCCCcccccccccceEEEec
Q psy2375 640 QHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN-QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKN 718 (929)
Q Consensus 640 tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~-~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~ 718 (929)
+||++|++.+..++|||..|+|+++||+++||++++++||++ ++++|||++.+||++++|.+|.+.+++|.||+|.++.
T Consensus 639 qHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~qPamp~gae~gI~kG~Y~l~~ 718 (887)
T COG2609 639 QHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEGAEEGIIKGIYKLET 718 (887)
T ss_pred ccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCCCCCCCcchhhhhhceeEeec
Confidence 999999999999999999999999999999999999999998 5689999999999999999999988999999999987
Q ss_pred cCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCC
Q psy2375 719 HNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSI 797 (929)
Q Consensus 719 g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~ 797 (929)
... .++.+|+|++||+++++|+ ||++|+++||+.++||||||+++|.||+.+|+|||++||.++++++|+.++|+..
T Consensus 719 ~~~-~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~~L~~~- 796 (887)
T COG2609 719 PGG-QGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQVLNAD- 796 (887)
T ss_pred CCC-CCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHHHHHhccC-
Confidence 631 1146899999999999999 9999999999999999999999999999999999999999999999999999944
Q ss_pred CcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccccccCc---CCccccceeeeeee
Q psy2375 798 GPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI---GDLSEVEVSTVMVK 874 (929)
Q Consensus 798 ~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L---G~i~eg~V~~~~vk 874 (929)
+|+|+++||++.++++|++|+| .+|++||+|+||+||+|++||+||++|+..|+.+++..| |+++.+++.++..+
T Consensus 797 ~p~Va~tDy~~~~a~qir~~vp--~~y~vLGtdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La~~g~i~~~vva~ai~k 874 (887)
T COG2609 797 GPVVAVTDYMKLFAEQIRAVVP--QRYRVLGTDGFGRSDSRENLRRFFEVDAYYVVVAALSALAKRGEIDKKVVADAIAK 874 (887)
T ss_pred CCeEEechhhHhHHHHHhcccC--CeeEEeccCCCCccCcHHHHHHHhccchHHHHHHHHHHHhcCCCcChhHHHHHHHH
Confidence 8999999999999999999999 799999999999999999999999999999999999988 57999999888888
Q ss_pred cCC
Q psy2375 875 IGD 877 (929)
Q Consensus 875 ~Gd 877 (929)
+|=
T Consensus 875 ~~i 877 (887)
T COG2609 875 YGI 877 (887)
T ss_pred hCC
Confidence 763
No 2
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=6.2e-220 Score=1924.04 Aligned_cols=873 Identities=56% Similarity=1.009 Sum_probs=842.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHCCCcCCCCCCcccccCCCCCcCCCCCChhhHHHHHHHHH
Q psy2375 5 TKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNFDDDFPGNIKIEEHLQSLI 84 (929)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~i 84 (929)
.+|+||+|||||+|||++||+++|++||+|||++|+++|+++|+.+|+..+|||+||||+++||.||||.++++++++.|
T Consensus 3 ~~d~d~~et~ew~~~~~~v~~~~g~~ra~~l~~~l~~~a~~~g~~~~~~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~i 82 (885)
T TIGR00759 3 PNDVDPIETQEWLESLDSVLAEEGPARARYLLEQLLEYAREHGVPIPAGTTTDYINTIPVEEQPAYPGDLELERRIRSII 82 (885)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccCCChhhcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHhhh
Q psy2375 85 RWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINF 164 (929)
Q Consensus 85 R~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~f 164 (929)
||++++||.+||+++.++|||+|+++|+++|+.+||+|||+.+.++.++|+|++|||+||++||+++++|++++++|++|
T Consensus 83 R~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD~VlSKGHasp~lYA~L~l~G~ls~e~L~~F 162 (885)
T TIGR00759 83 RWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGDLVFFQGHAAPGIYARAFLEGRLTEEQLDNF 162 (885)
T ss_pred HHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEECCcHHHHHHHHHHHcCCCCHHHHHHh
Confidence 99999999999998999999999999999999999999999643344566899999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHH
Q psy2375 165 RQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMA 244 (929)
Q Consensus 165 R~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A 244 (929)
||+..++||+|||||+.+|++|+|+|||||+|+++|+|+|+|+|||++|++.++.+++||||+|||||+||++|||+++|
T Consensus 163 Rq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~A 242 (885)
T TIGR00759 163 RQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFA 242 (885)
T ss_pred cCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHH
Confidence 99866889999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhcc
Q psy2375 245 AREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNY 324 (929)
Q Consensus 245 ~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~ 324 (929)
+++||||||||||||+|++||||++|++++++|+++|+++||+||+|+||+.||+||++|+++.|+++|++|+||+||+|
T Consensus 243 a~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~ 322 (885)
T TIGR00759 243 AREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTY 322 (885)
T ss_pred HHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcc
Q psy2375 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNT 404 (929)
Q Consensus 325 ~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~ 404 (929)
++++|+|+||||||+||+|++||++|||+|||+|+|||||+++|++||++|++++++||||+|+|+||||++.++|++|.
T Consensus 323 ~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvKG~G~~~~~e~~n~ 402 (885)
T TIGR00759 323 KAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGYGMGDAAESRNT 402 (885)
T ss_pred hhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeeecCCCChhhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999977999999
Q ss_pred cccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhh
Q psy2375 405 AHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKIL 484 (929)
Q Consensus 405 ~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~ 484 (929)
+||.|+|+.++++.||++|++|++|+++++.||++|+++|+|++|+++||++|+|++|+|+.... ++++|+++.|..++
T Consensus 403 ~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~-~l~vP~l~~~~~~~ 481 (885)
T TIGR00759 403 AHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAE-HLTVPALEFFGALL 481 (885)
T ss_pred cccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCC-CCCCCCchhhHHHh
Confidence 99998999999999999999999999999999999999999999999999999999999987755 78899999999999
Q ss_pred ccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCc
Q psy2375 485 EPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQ 564 (929)
Q Consensus 485 ~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR 564 (929)
+++ +++++||+|||+|+|..|+++|++++|||+|+||+++||||++||+|+|||++.||+|+|+|++++++|||+..||
T Consensus 482 ~~~-~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq 560 (885)
T TIGR00759 482 KGS-GEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQ 560 (885)
T ss_pred cCC-CCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCc
Confidence 987 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCCh
Q psy2375 565 ILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDG 644 (929)
Q Consensus 565 ~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ 644 (929)
++++||+|+|+|++|+||||+||++|.+|||||++||||||||++|++|+++++++++|++++|+||||++++|+|||++
T Consensus 561 ~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~waa~d~~argfl~g~taGrtTL~gEGlqHqdg 640 (885)
T TIGR00759 561 ILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDG 640 (885)
T ss_pred chhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHHHHHhhhcCCceEeccCCCcccCCCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCcCC
Q psy2375 645 HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKS 724 (929)
Q Consensus 645 ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~ 724 (929)
|++.+..++|||+.|+||+++|+++|+++++++||+++++||||||.+|||+.+|.+|++.+++|.+|+|+++++.....
T Consensus 641 ~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~~~~egIlkG~Y~l~~~~~~~~ 720 (885)
T TIGR00759 641 HSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRFETSTEEKA 720 (885)
T ss_pred cchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCCcchHHhHHhCceecccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999987532111
Q ss_pred CCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEE
Q psy2375 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVA 803 (929)
Q Consensus 725 g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtv 803 (929)
+++|+|++||++++||+ ||++|+++|||.++||||||+++|.|++++|+|||+|||.++++.+|++++|.+..+||||+
T Consensus 721 ~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~ 800 (885)
T TIGR00759 721 KGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIAS 800 (885)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEE
Confidence 35899999999999999 99999999999999999999999999999999999999999999999999998877999999
Q ss_pred ecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccccccCc---CCccccceeeeeeecCCeec
Q psy2375 804 TDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI---GDLSEVEVSTVMVKIGDTIK 880 (929)
Q Consensus 804 ed~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L---G~i~eg~V~~~~vk~Gd~V~ 880 (929)
+||++.+++||++|++ .+|.+||+|+||+||||++||+||++|+++|+.+++..| |+++...+.++..++|=...
T Consensus 801 tDy~~~~~~qir~~vp--~~~~~LGtDgFGrSdtr~~lr~~fevDa~~IV~AAL~aL~~~g~~~~~~~~~a~~~~~~~~~ 878 (885)
T TIGR00759 801 TDYVRAFAEQIRPYVP--RKYVTLGTDGFGRSDTRENLRHFFEVDAKSVVLAALYALADDGEIDGDVVADAIAKYGIDPD 878 (885)
T ss_pred ccchhhhHHHHhhhcC--CCceEecCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHcCCCCC
Confidence 9999999999999999 799999999999999999999999999999999999998 57999999999999875443
Q ss_pred C
Q psy2375 881 I 881 (929)
Q Consensus 881 ~ 881 (929)
+
T Consensus 879 ~ 879 (885)
T TIGR00759 879 K 879 (885)
T ss_pred C
Confidence 3
No 3
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=9.2e-214 Score=1896.99 Aligned_cols=875 Identities=60% Similarity=1.048 Sum_probs=836.6
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHCCCcCCCCCCcccccCCCCCcCCCCCChhhHHHHHHH
Q psy2375 3 ETTKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNFDDDFPGNIKIEEHLQS 82 (929)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 82 (929)
...+|+||+|||||+|||++||+++|++||+|||++|+++|++.|+.+|+..+|||+||||+++||.||++.++++++++
T Consensus 7 ~~~~d~d~~et~ew~~~~~~~~~~~g~~ra~~~~~~l~~~~~~~~~~~~~~~~t~y~nti~~~~~~~~pg~~~~e~~i~~ 86 (891)
T PRK09405 7 SQLNDIDPIETQEWLEALDSVIREEGPERAHYLLEQLLERAREKGVSLPASATTPYINTIPVEEEPEYPGDLELERRIRS 86 (891)
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccCCChhhcCCCCCCHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHh
Q psy2375 83 LIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMI 162 (929)
Q Consensus 83 ~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~ 162 (929)
.||||+++||.+||+++.++|||+||++|+|+||.+||+|||+.|+++.++|+|++|||+||++||+++|+||+++++|+
T Consensus 87 ~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~~l~G~l~~e~L~ 166 (891)
T PRK09405 87 YIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFFQGHASPGIYARAFLEGRLTEEQLD 166 (891)
T ss_pred HHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEECchHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999988899999999999999999999999998877777889999999999999999999999999999
Q ss_pred hhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHH
Q psy2375 163 NFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEIS 242 (929)
Q Consensus 163 ~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~ 242 (929)
+|||+..++||+|||||++||++|+|||||||+||++|+|+|+|+|||.+|++.++.+++||||+|||||+||++|||++
T Consensus 167 ~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~ 246 (891)
T PRK09405 167 NFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAIS 246 (891)
T ss_pred HhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHH
Confidence 99998777899999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh
Q psy2375 243 MAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ 322 (929)
Q Consensus 243 ~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q 322 (929)
+|++++|||||||||||+|++||||++|++++++++++|+++||+|++|+||+.||+||+||++|+|++||++|+||+||
T Consensus 247 ~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq 326 (891)
T PRK09405 247 LAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQ 326 (891)
T ss_pred HHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCC
Q psy2375 323 NYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEAR 402 (929)
Q Consensus 323 ~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~ 402 (929)
+|++++|+|+||||||+||+|++||++|||+|||+|+|||||+.+|++||++|++++++||||+|+|+||||+++++|++
T Consensus 327 ~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~PtvIia~TvkG~G~~~~~e~~ 406 (891)
T PRK09405 327 TYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTIKGYGMGEAGEGK 406 (891)
T ss_pred HHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEEEEEeceecCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999997789999
Q ss_pred cccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhh
Q psy2375 403 NTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKK 482 (929)
Q Consensus 403 ~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~ 482 (929)
|.+|+.|+|+.++++.||++||+|++|+++++.|||+|+++|++++|+.++|++|+|++|.|..... ++++|+...|..
T Consensus 407 ~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~-~~~~P~~~~~~~ 485 (891)
T PRK09405 407 NIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFE-PLEVPALSAFEA 485 (891)
T ss_pred ccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-CCCCCChhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999886665 788999999999
Q ss_pred hhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcC
Q psy2375 483 ILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKN 562 (929)
Q Consensus 483 ~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~ 562 (929)
+++++ +++++||||||+++|.+|+++|++++|||+|+||+++||||++||+|+|||++.||+|+|+|+++++.|+|++|
T Consensus 486 ~~~~~-~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~P 564 (891)
T PRK09405 486 LLKGS-GEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKD 564 (891)
T ss_pred hhccC-CCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcCC
Confidence 88888 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+||||+||||||||++|+|||++||++|.+|+||+++||||++||++||+|++++|+..+|++++|++|++++++|+|||
T Consensus 565 gRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHq 644 (891)
T PRK09405 565 GQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHE 644 (891)
T ss_pred CcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCc
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNE 722 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~ 722 (929)
++||++++|+||||+||+|||++|++.++++++++|+..+..++||++.+|+++.+|.+|++.++++.||+|+|+++...
T Consensus 645 dg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~~~~pe~~~~~igKg~y~Lr~g~~~ 724 (891)
T PRK09405 645 DGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPAMPEGAEEGILKGMYKLETAEGK 724 (891)
T ss_pred chhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCCCCCcccccccceEEEEeccCCCC
Confidence 99999999999999999999999999999999999986656567777777888877777777778899999999986411
Q ss_pred CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEE
Q psy2375 723 KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPII 801 (929)
Q Consensus 723 ~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vV 801 (929)
+++.||+|+++|++|++|+ ||++|++++||+++||||+|+||||++++.++|||+|||.++++.+|+.+++..+.+++|
T Consensus 725 ~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~~gG~~V 804 (891)
T PRK09405 725 KGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKGAEGPVV 804 (891)
T ss_pred CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcccCCcEE
Confidence 1234899999999999999 999999867999999999999999999999999999999999999999999987668999
Q ss_pred EEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccccccCc---CCccccceeeeeeecCCe
Q psy2375 802 VATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI---GDLSEVEVSTVMVKIGDT 878 (929)
Q Consensus 802 tved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L---G~i~eg~V~~~~vk~Gd~ 878 (929)
|+|||++.++++|++|++ .++.+||+|+||+||++++|+++||+|+++|+.+++..| |+++...+.++..++|=.
T Consensus 805 tv~D~~~aVae~la~~~p--~~~~~LGvD~FG~SGt~~~L~~~fglda~~Iv~aal~~La~~g~~~~~~~~~a~~~~~~~ 882 (891)
T PRK09405 805 AATDYMKLFAEQIRAFVP--GDYVVLGTDGFGRSDTREALRRFFEVDAEYVVVAALKALADEGEIDASVVAEAIKKYGID 882 (891)
T ss_pred EecchHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCC
Confidence 999999999999999999 799999999999999999999999999999999999988 579999999999988754
Q ss_pred ecC
Q psy2375 879 IKI 881 (929)
Q Consensus 879 V~~ 881 (929)
..+
T Consensus 883 ~~~ 885 (891)
T PRK09405 883 PDK 885 (891)
T ss_pred CCC
Confidence 443
No 4
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2.6e-209 Score=1866.77 Aligned_cols=866 Identities=52% Similarity=0.951 Sum_probs=822.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHCCCcCCCCCCcccccCCCCCcCCCCCChhhHHHHHHHHH
Q psy2375 5 TKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNFDDDFPGNIKIEEHLQSLI 84 (929)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~i 84 (929)
.+|+||+|||||+|||++||+++|++||+|||++|+++|++.|+.+|+..+|||+||||+++||.||||.+||+++++.|
T Consensus 17 ~~d~~~~e~~ew~~~~~~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~i 96 (896)
T PRK13012 17 LPDIDPQETAEWLEALDAVVAHAGPERARYLLDRLLERAAARGIALPGLLTTPYVNTIPVDQQPPYPGDLALEERLAAII 96 (896)
T ss_pred CCCCChhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccCCChhhcCCCCCCHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHhhh
Q psy2375 85 RWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINF 164 (929)
Q Consensus 85 R~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~f 164 (929)
||++++||.+||++++++|||+||++|+|+||.+||+|||+.+.....+|+|++|||+||++||+++++||+++++|++|
T Consensus 97 R~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~~l~G~l~~e~L~~f 176 (896)
T PRK13012 97 RWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYFQPHSAPGIYARAFLEGRLSEEQLDHF 176 (896)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEECcchHHHHHHHHHHcCCCCHHHHHHh
Confidence 99999999999998899999999999999999999999999643333455899999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHH
Q psy2375 165 RQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMA 244 (929)
Q Consensus 165 R~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A 244 (929)
||+..++||+|||||++||++|+|+|||||+|+++|+|+|+|+|||++|++.+..+++||||+|||||+||++|||+.+|
T Consensus 177 R~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A 256 (896)
T PRK13012 177 RQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLA 256 (896)
T ss_pred cCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHH
Confidence 99966889999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhcc
Q psy2375 245 AREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNY 324 (929)
Q Consensus 245 ~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~ 324 (929)
++++|||||||||||+|++||||++|++++++|+++|+++||+||+|+||+.||+||+||++|.|++||++|+||+||+|
T Consensus 257 ~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~ 336 (896)
T PRK13012 257 AREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTF 336 (896)
T ss_pred HHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcc
Q psy2375 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNT 404 (929)
Q Consensus 325 ~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~ 404 (929)
++++|+|+||||||+||+|++||++|||+|||+|+|||||+.+|++||++|++++++||||+|+|+||||++.++|+++.
T Consensus 337 ~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~PtvIla~TvkG~G~~~~~e~~~~ 416 (896)
T PRK13012 337 KANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVILAKTKKGYGMGEAGEGRMT 416 (896)
T ss_pred hhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecCCCCcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999977999999
Q ss_pred cccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhh
Q psy2375 405 AHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKIL 484 (929)
Q Consensus 405 ~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~ 484 (929)
+|+.++|+.+++++||++|++|++|+++++.||++|++++++++|+.++|++|+|++|+|..... ++.+|....|...+
T Consensus 417 ~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~-~l~~p~~~~~~~~~ 495 (896)
T PRK13012 417 THQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAP-PLPVPPLSAFAQFA 495 (896)
T ss_pred cccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCccccccc-ccCCCchhhHHHhh
Confidence 99988999999999999999999999999999999999999999999999999999999876655 57788888898877
Q ss_pred ccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCc
Q psy2375 485 EPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQ 564 (929)
Q Consensus 485 ~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR 564 (929)
+++ +++++|||+||+++|++|+++|++++|||+++||+++||||++||++.|||++.||+|+|+|+++++.|+|++|||
T Consensus 496 ~~~-~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR 574 (896)
T PRK13012 496 LGA-GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQ 574 (896)
T ss_pred ccc-CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCc
Confidence 775 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCCh
Q psy2375 565 ILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDG 644 (929)
Q Consensus 565 ~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ 644 (929)
|||+||+|||||++|+|||+|||++|.+|+||+++|+||++||++||+|++++|+.++|++++|++|+++++||+|||++
T Consensus 575 ~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~ 654 (896)
T PRK13012 575 ILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDG 654 (896)
T ss_pred EEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcch
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC--CceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCc
Q psy2375 645 HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN--QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNE 722 (929)
Q Consensus 645 ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~--~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~ 722 (929)
||++++|+||||+||+|||++|++.++++++++|+.. +.++|||+++ +++++|.++++..+++.+|+|++++..
T Consensus 655 eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r--~~~~~p~~~~~~~~~i~kG~y~l~~~~-- 730 (896)
T PRK13012 655 HSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMN--ENYAQPALPEGAEEGILKGMYRLAAAA-- 730 (896)
T ss_pred HhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecC--CCCCCCCCCccchhccccCcEEEeccC--
Confidence 9999999999999999999999999999999887665 3455666654 566678887765678899999997642
Q ss_pred CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEE
Q psy2375 723 KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPII 801 (929)
Q Consensus 723 ~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vV 801 (929)
++++|+||+||++|++|+ ||++|+++|||+++||||||+|||+++++.+||||++||+.+++.+|++++|....+|+|
T Consensus 731 -~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~V 809 (896)
T PRK13012 731 -EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVV 809 (896)
T ss_pred -CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeE
Confidence 356999999999999999 999999999999999999999999999999999999999999999999999988668999
Q ss_pred EEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccccccCc---CCccccceeeeeeecCCe
Q psy2375 802 VATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI---GDLSEVEVSTVMVKIGDT 878 (929)
Q Consensus 802 tved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L---G~i~eg~V~~~~vk~Gd~ 878 (929)
+++||+++++++|++|++ .++.+||+|+||+||++++|+++||+|+++|+.+++..| |+++...+.++..++|=.
T Consensus 810 a~~D~~~aVae~l~~~~~--~~~~~LGvD~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La~~g~~~~~~~~~a~~~~~~~ 887 (896)
T PRK13012 810 AATDYVRAVPEQIRAFVP--ARYVTLGTDGFGRSDTRAALRRFFEVDRHSIVLAALKALADDGEVERTVVAEAIERYGID 887 (896)
T ss_pred EecchHHHHHHHHHHhCC--CCeEEEeeCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCC
Confidence 999999999999999999 789999999999999999999999999999999999988 579999999999988754
Q ss_pred e
Q psy2375 879 I 879 (929)
Q Consensus 879 V 879 (929)
-
T Consensus 888 ~ 888 (896)
T PRK13012 888 D 888 (896)
T ss_pred C
Confidence 3
No 5
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=4.2e-207 Score=1839.11 Aligned_cols=867 Identities=49% Similarity=0.905 Sum_probs=817.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHCCCcCCCCCCcccccCCCCCcCCCCCChhhHHHHHHHHH
Q psy2375 5 TKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNFDDDFPGNIKIEEHLQSLI 84 (929)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~i 84 (929)
.+|+||+|||||+|||++||+++|++||+|||++|+++|+++|+.+|...+|||+||||+++|+.||||.++++++++.|
T Consensus 3 ~~d~~~~e~~ew~~~~~~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~t~y~nti~~~~~~~~pgd~~~~~~~a~~i 82 (889)
T TIGR03186 3 HDDTDPQETAEWLDALDGVVAHAGAERAQYLLAQLAAHAARLGLAPPAAGATPYVNTIAVDQEPPYPGDLQLEERLAAIL 82 (889)
T ss_pred CCCCChhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccCCCCcCCCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999777799999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHhhh
Q psy2375 85 RWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINF 164 (929)
Q Consensus 85 R~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~f 164 (929)
||++++||.+||++++++|||+|+++|+++|+.+||++||+.+++..++|+|+|+||+||++||+++++|++++|+|++|
T Consensus 83 R~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l~l~G~l~~e~L~~f 162 (889)
T TIGR03186 83 RWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARAFLEGFLSDAQLAHY 162 (889)
T ss_pred HHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHHHHcCCCCHHHHHHh
Confidence 99999999999988889999999999999999999999999765556677999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHH
Q psy2375 165 RQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMA 244 (929)
Q Consensus 165 R~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A 244 (929)
||+.+++||++||||+.+|++|+|+|||||+|+++|+|||+|+|||++|++.+..+++||||+|||||+||++|||+++|
T Consensus 163 Rq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~A 242 (889)
T TIGR03186 163 RQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLA 242 (889)
T ss_pred cCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHH
Confidence 99877789999999999999999999999999999999999999999997777888999999999999999999999999
Q ss_pred HHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhcc
Q psy2375 245 AREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNY 324 (929)
Q Consensus 245 ~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~ 324 (929)
+++||||||||||||+|++||||+++++++++++++|++|||+|++|+||++||+||++|+++.|+++|++|+||+||+|
T Consensus 243 a~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~ 322 (889)
T TIGR03186 243 ARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTF 322 (889)
T ss_pred HHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcc
Q psy2375 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNT 404 (929)
Q Consensus 325 ~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~ 404 (929)
++++|+|+||||||+||+|++||++|||+|||+|+|||||+.+|++||++|++++++||||+|+|+||||++.+++++|.
T Consensus 323 ~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTvIla~TvkG~G~~~~g~~~~~ 402 (889)
T TIGR03186 323 SANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILAKTMKGFGMGAIGQGRMT 402 (889)
T ss_pred hhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecCCCCcccCcccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999988888999
Q ss_pred cccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhh
Q psy2375 405 AHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKIL 484 (929)
Q Consensus 405 ~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~ 484 (929)
+||++||+.+++++||++|++|++|++++..|||+|.++|++++|+.++|++|+|++|.|......++.+|+++.|....
T Consensus 403 ~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~ 482 (889)
T TIGR03186 403 THQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFA 482 (889)
T ss_pred ccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998875433257789888888887
Q ss_pred ccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCc
Q psy2375 485 EPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQ 564 (929)
Q Consensus 485 ~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR 564 (929)
+++ +++++||||||+++|..|++++++++|||+|+||+++||||++||+|+|||++.||+|+|+|++++++|+|++|+|
T Consensus 483 ~~~-~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R 561 (889)
T TIGR03186 483 LDA-EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQ 561 (889)
T ss_pred ccC-CCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcCCCc
Confidence 766 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCCh
Q psy2375 565 ILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDG 644 (929)
Q Consensus 565 ~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ 644 (929)
|||+||+|||||++|+|||++|+++|.+|+||+++||||+++|++||+|++++++.+++++++++|+++++++|+|||++
T Consensus 562 ~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~ 641 (889)
T TIGR03186 562 ILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDG 641 (889)
T ss_pred EEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999988887777776666666899999999999
Q ss_pred hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCC--ceEEEEEecCCCCCCCCCCCcc----cccccccceEEEec
Q psy2375 645 HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQ--EDVFYYITVMNENYSHPGLKKG----QEKGIIKGLYLLKN 718 (929)
Q Consensus 645 ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~--~~v~~rl~~~~e~~~~p~~~~~----~~~~i~~G~y~l~~ 718 (929)
||++++|+||||+||+|||++|++.++++++++|+.++ .++|||+++ +++++|.++++ ...++.+|+|+|++
T Consensus 642 eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r--~~~~~p~~~~~~~~~~~~gi~kg~y~l~~ 719 (889)
T TIGR03186 642 TSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTN--ENYAQPSLPEDRLDAVRRGILKGMYPLDP 719 (889)
T ss_pred HhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCC--CCCCCCCcCCCcccchhcchhheeeEeec
Confidence 99999999999999999999999999999999888864 456776665 55667877654 24567778899985
Q ss_pred cCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCC
Q psy2375 719 HNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSI 797 (929)
Q Consensus 719 g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~ 797 (929)
+. .+++||+|++||++|++|+ ||++|+++|||+++||||+|+|||++++++++|||++||.++++.+|+...|.+..
T Consensus 720 ~~--~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~a~r~~~l~t~Eeh~~~~v~ggLg~~~ 797 (889)
T TIGR03186 720 AA--LAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRAAERAQRLGDAERPPSPHVAQALGATQ 797 (889)
T ss_pred cC--CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHHHHHhCCcccccccccccHhhhhCCCC
Confidence 32 1357999999999999999 99999998999999999999999999999999999999999998999999998866
Q ss_pred CcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccccccCc---CCccccceeeeeee
Q psy2375 798 GPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI---GDLSEVEVSTVMVK 874 (929)
Q Consensus 798 ~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L---G~i~eg~V~~~~vk 874 (929)
+|+||++||++.++++|+++++ .++.+||+|+||+||++++||++||+|+++|+.+++..| |+++...+.++..+
T Consensus 798 ~p~va~~D~~~avae~i~~~~p--~~~~~LG~D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~~~g~~~~~~~~~a~~~ 875 (889)
T TIGR03186 798 GPVIAATDYVRAVPELIRAYVP--RRYVTLGTDGFGRSDTRAALRAFFEVDRASIVIAALQALADDGLVARDVVRQAIAR 875 (889)
T ss_pred CCeeeecchHHHHHHHHHhhCC--CCEEEeccCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999 799999999999999999999999999999999999988 67999999999998
Q ss_pred cCCe
Q psy2375 875 IGDT 878 (929)
Q Consensus 875 ~Gd~ 878 (929)
+|=.
T Consensus 876 ~~~~ 879 (889)
T TIGR03186 876 YGKA 879 (889)
T ss_pred cCCC
Confidence 8744
No 6
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-104 Score=898.43 Aligned_cols=635 Identities=23% Similarity=0.285 Sum_probs=528.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 75 KIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 75 ~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
++.+++.+.||-++++||.+|| +||+|..+|+|+++.+||++|++ +|+|.+|||||+|.||+|+.+|+.+
T Consensus 4 ~~~~~~~naiR~Ls~davqkAn------SGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsll 77 (663)
T COG0021 4 KIDKLLANAIRFLSMDAVQKAN------SGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLL 77 (663)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc------CCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHH
Confidence 3455666899999999999999 69999999999999999999887 3566799999999999999999999
Q ss_pred HHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc---cCCCCcEEEEE
Q psy2375 151 FLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI---TNTINRKIWIL 226 (929)
Q Consensus 151 ~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~---~~~~~~~v~~~ 226 (929)
+|.|+ ++.|+|++|||. ++-.+|||.....|+ ++..||++|+|+++|+|||+|.|+|+++.. .+--|+++||+
T Consensus 78 hl~Gy~ls~edLk~FRQ~--~SkTpGHPE~~~t~G-Ve~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl 154 (663)
T COG0021 78 HLTGYDLSLEDLKNFRQL--GSKTPGHPEYGHTPG-VEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVL 154 (663)
T ss_pred HHccCCCCHHHHHhhccC--CCCCCCCCCcCCCCC-eEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEE
Confidence 99999 999999999998 556677777555675 899999999999999999999999998852 23456899999
Q ss_pred EcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCch
Q psy2375 227 CGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306 (929)
Q Consensus 227 ~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~ 306 (929)
+|||+++||.++||+++|++.||+|||+++|+|..+|||++... +.+++..+|+++||+|++++
T Consensus 155 ~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~--f~ed~~~RfeAyGW~vi~~~-------------- 218 (663)
T COG0021 155 VGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLS--FTEDVAKRFEAYGWNVIRVI-------------- 218 (663)
T ss_pred ecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccc--cchhHHHHHHhcCCeEEEec--------------
Confidence 99999999999999999999999999999999999999999984 78999999999999999874
Q ss_pred hHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEE
Q psy2375 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLL 386 (929)
Q Consensus 307 ~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~ 386 (929)
||||+++|.+|+++|+..++|||+|+
T Consensus 219 ------------------------------------------------------DG~D~e~I~~Ai~~Ak~~~dkPtlI~ 244 (663)
T COG0021 219 ------------------------------------------------------DGHDLEAIDKAIEEAKASTDKPTLII 244 (663)
T ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999879999999
Q ss_pred EeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHH--------HHhC
Q psy2375 387 IKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCR--------KKLG 458 (929)
Q Consensus 387 ~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~--------~~l~ 458 (929)
|+|++|+|.+. .++.+.+|+. ||.+++++.+|+.+||+. .||++|++....++-..++. +.+.
T Consensus 245 ~kTiIG~Gsp~-kegt~~~HGa-pLg~~ev~~~k~~lgw~~-------~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~ 315 (663)
T COG0021 245 VKTIIGKGSPN-KEGTHKVHGA-PLGEEEVAAAKKALGWEP-------EPFEVPEEVYAAFRAVEERGAKAEAAWNELFA 315 (663)
T ss_pred EEeeeecCCCC-cCCCccccCC-CCCHHHHHHHHHHhCCCC-------CceecCHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999886 8999999998 999999999999999964 46899887654443221111 1111
Q ss_pred ---CCCCcccccccc--cccCCChHHHhhhhcccc-ccCcccHHHHHHHHHHHHHhc-cCCCCceeeeecCCCCCcCccc
Q psy2375 459 ---GYLPKRRQKSDE--KLLIPPLEAFKKILEPTL-NERKISTTYAYVRILNTILRD-KNIGNRVVPILVDESRTFGMEG 531 (929)
Q Consensus 459 ---g~~p~~~~~~~~--~l~~P~~~~f~~~~~~~~-~~~~~str~af~~~L~~L~~~-~~i~~rIv~i~aD~~~s~gl~~ 531 (929)
...|+...++.. .-..|. .|...++... .++.++||.+++.+|+.|++. |++ +..+||++.|+.+.-
T Consensus 316 ~y~~~~Pe~~~~~~r~~~~~~p~--~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l----~GGSADLa~Sn~T~~ 389 (663)
T COG0021 316 AYKKKYPELAAEFERRLNGELPA--NWAAFLPKFEANGKSIATRKASGKALNALAKKLPEL----IGGSADLAPSNLTKI 389 (663)
T ss_pred HHHhhChHHHHHHHHHhcccCch--hHHHhhhhhcccccccchHHHHHHHHHHHHhhCccc----cccCcccccCccccc
Confidence 112221111110 011221 2222222211 134589999999999999998 886 899999999976541
Q ss_pred cchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHH
Q psy2375 532 LFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDL 611 (929)
Q Consensus 532 ~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~ 611 (929)
.....|.| +.+.||++++||+|++|.++ .+|||.|| +++||..||.+|. -.+...
T Consensus 390 ---------~~~~~~~~----------~~~~gr~i~~GVREf~M~Ai----mNGialhG-g~~pyggTFlvFs-dY~r~A 444 (663)
T COG0021 390 ---------SGSGDFSP----------ENYAGRYIHFGVREFAMAAI----MNGIALHG-GFIPYGGTFLVFS-DYARPA 444 (663)
T ss_pred ---------cccCCCCC----------CCCCCCeeEEeeHHHHHHHH----HHhHHHhc-CceeecceehhhH-hhhhHH
Confidence 12234444 44789999999999986543 56799999 7999999999994 444455
Q ss_pred HHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 612 AWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 612 i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
+|+++.+.. +++++.||+++.+|+||||||++|+++.+|+|||+.|++|||++|++.+++.|+.+.++| ..+.+||
T Consensus 445 iRlaALm~l-~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gP---t~LiltR 520 (663)
T COG0021 445 VRLAALMGL-PVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKYALERKDGP---TALILTR 520 (663)
T ss_pred HHHHHhcCC-CeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHHHHhcCCCC---eEEEEec
Confidence 888888877 588889999999999999999999999999999999999999999999999999986554 7789999
Q ss_pred CCCCCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchh
Q psy2375 692 MNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 692 ~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~ 770 (929)
+| .|.++....+++.+|+|+|.++.. ..+|++||+||++|..|+ ||+.|+++ ||.++||||||++.|++
T Consensus 521 Qn----lp~l~~t~~~~~~kGaYvl~~~~~--~~pd~iliAtGSEV~lAv~Aa~~L~~~-~~~vrVVS~P~~~~fe~--- 590 (663)
T COG0021 521 QN----LPVLERTDLEGVAKGAYVLKDSGG--EDPDVILIATGSEVELAVEAAKELEAE-GIKVRVVSMPSFELFEK--- 590 (663)
T ss_pred CC----CCccCCCccccccCccEEEeecCC--CCCCEEEEecccHHHHHHHHHHHHHhc-CCceEEEeccchHHHHc---
Confidence 87 688877667789999999998631 247999999999999999 99999988 89999999999999965
Q ss_pred hhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeh
Q psy2375 771 ETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIH 850 (929)
Q Consensus 771 ~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae 850 (929)
|+.+|.+++|.......|++|-. ....+..|++ .+..++|+|+||.|++.+.|+++||++.+
T Consensus 591 -------------Q~~~Y~~~vL~~~v~~rvaiEa~---~~~~W~ky~g--~~g~~ig~~~FG~Sap~~~l~~~fGft~e 652 (663)
T COG0021 591 -------------QDEEYRESVLPGAVTARVAIEAG---SALGWYKYVG--LDGAVIGMDSFGASAPGDELFKEFGFTVE 652 (663)
T ss_pred -------------CCHHHHHhhccCCccceEEEEec---cccchhhhcC--CCCcEEeeccCcCCCCHHHHHHHhCCCHH
Confidence 56789999998873347888875 3344677877 45678999999999999999999999999
Q ss_pred eeccccccCc
Q psy2375 851 MKKIIKVPNI 860 (929)
Q Consensus 851 ~Iv~~al~~L 860 (929)
.|+++++..|
T Consensus 653 ~vv~~~~~~l 662 (663)
T COG0021 653 NVVAKAKSLL 662 (663)
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 7
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.3e-102 Score=934.12 Aligned_cols=628 Identities=21% Similarity=0.256 Sum_probs=511.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHHHcCC
Q psy2375 80 LQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAFLEGR 155 (929)
Q Consensus 80 ~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr 155 (929)
+.+.||+++++|+.+|+ +||+|+++|+++++.+||.+|++ .|+|+++|+||+|+||++|++|+++++.|+
T Consensus 7 ~a~~iR~~~~~~~~~a~------~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~ 80 (663)
T PRK12753 7 LANAIRALSMDAVQKAN------SGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGY 80 (663)
T ss_pred HHHHHHHHHHHHHHhcC------CCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCC
Confidence 44689999999999998 79999999999999999998887 367789999999999999999999999998
Q ss_pred -CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcccc---CCCCcEEEEEEcCCc
Q psy2375 156 -LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKIT---NTINRKIWILCGDGE 231 (929)
Q Consensus 156 -~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~---~~~~~~v~~~~GDGe 231 (929)
++.|+|++|||. ++.+++||.+...|+ ++++|||+|+|+++|+|+|+|.||+..+... +..+++|||++||||
T Consensus 81 ~~~~e~L~~fr~~--~s~~~ghp~~~~~pg-ve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGe 157 (663)
T PRK12753 81 DLPIEELKNFRQL--HSKTPGHPEIGYTPG-VETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGC 157 (663)
T ss_pred CCCHHHHHHhccC--CCCCCCCCCCCCCCC-cccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCc
Confidence 999999999997 566889998876775 7999999999999999999999997654110 113789999999999
Q ss_pred cCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEE-EecccchhhhhhcCchhHHH
Q psy2375 232 MDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIK-VIWSSSWDKLLKCDQNGILK 310 (929)
Q Consensus 232 ~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~-v~~g~~~d~l~~~~~~~~l~ 310 (929)
++||.+|||+++|+++||+|||+|||+|+++||||+... ..+++.++|+++||+|+. |
T Consensus 158 l~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~--~~~~~~~~f~a~Gw~~~~~v------------------- 216 (663)
T PRK12753 158 LMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGW--FTDDTAKRFEAYHWHVIHEI------------------- 216 (663)
T ss_pred cccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhh--cChhHHHHHHHcCCeEEcee-------------------
Confidence 999999999999999999999999999999999999973 468999999999999996 6
Q ss_pred HHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 311 KIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 311 ~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
||||+++|++|+++|++.+++|++|+++|+
T Consensus 217 --------------------------------------------------DGhD~~~i~~a~~~a~~~~~~P~~I~~~T~ 246 (663)
T PRK12753 217 --------------------------------------------------DGHDPQAIKEAILEAQSVKDKPSLIICRTI 246 (663)
T ss_pred --------------------------------------------------CCCCHHHHHHHHHHHHHCCCCeEEEEEEEe
Confidence 999999999999999876689999999999
Q ss_pred cccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHH-----------HHHHHHHHhCC
Q psy2375 391 KGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQ-----------YLKNCRKKLGG 459 (929)
Q Consensus 391 KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~-----------~~~~~~~~l~g 459 (929)
||+|+++ .|+...+|+. ++++++++++++.++++. .||..|++....++ |.+. -++...
T Consensus 247 kG~G~~~-~e~~~~~H~~-~l~~~~~~~~~~~l~~~~-------~~F~v~~~v~~~~~~~~~~~~~~~~w~~~-~~~~~~ 316 (663)
T PRK12753 247 IGFGSPN-KAGKEESHGA-PLGEEEVALTRQKLGWHH-------PPFEIPKEIYAAWDAREKGEKAEQAWNEK-FAAYKK 316 (663)
T ss_pred ecCCCCc-ccCCCCccCC-CCCHHHHHHHHHHhCCCC-------CCCCCCHHHHHHHHhhhhchHHHHHHHHH-HHHHHH
Confidence 9999997 6999999986 899999999999999863 35776654322111 1100 011111
Q ss_pred CCCcccccccccc--cCCC-h-HHHhhhhcc-ccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccch
Q psy2375 460 YLPKRRQKSDEKL--LIPP-L-EAFKKILEP-TLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFR 534 (929)
Q Consensus 460 ~~p~~~~~~~~~l--~~P~-~-~~f~~~~~~-~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~ 534 (929)
..|+....+...+ .+|. . ..|...+.. ...+++++||.+|+.+|.++++. .++|+++++|++.|+.+. +.
T Consensus 317 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~---~p~lv~~sADl~~S~~~~--~~ 391 (663)
T PRK12753 317 AYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPL---LPELLGGSADLAPSNLTI--WS 391 (663)
T ss_pred HCHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhh---CCCeEEEccccccccCcc--cc
Confidence 1222111111111 1222 1 112222111 00235789999999999999988 334599999998886542 00
Q ss_pred hcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHH
Q psy2375 535 QIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWL 614 (929)
Q Consensus 535 ~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~ 614 (929)
. ...|++.+|+||||+||+||+|+++ |+| ||++| |++||+.+|++| ++|++||++.
T Consensus 392 ~------------------~~~f~~~~p~r~i~~GIaEq~mv~~--aaG--lA~~~-G~~P~~~tf~~F-~~r~~~qir~ 447 (663)
T PRK12753 392 G------------------SKSLKEDPAGNYIHYGVREFGMTAI--ANG--IAHHG-GFVPYTATFLMF-VEYARNAARM 447 (663)
T ss_pred c------------------ccchhhcCCCCEEEeeecHHHHHHH--HHH--HHHhC-CCeEEEEehHHH-HHHHHHHHHH
Confidence 0 0136677999999999999999886 554 88865 599999999999 5799999998
Q ss_pred hhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCC
Q psy2375 615 AGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNE 694 (929)
Q Consensus 615 ~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e 694 (929)
+ +++..+|++++||+|+++|+||+|||++||++++|+||||+|++|||++|++.+++.+++...+| +|+|++|.+
T Consensus 448 ~-a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP---~~irl~R~~- 522 (663)
T PRK12753 448 A-ALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGP---TALILSRQN- 522 (663)
T ss_pred H-HhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCC---EEEEecCCC-
Confidence 7 67777899999999999999999999999999999999999999999999999999999854344 999999976
Q ss_pred CCCCCCCCccc--ccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhh
Q psy2375 695 NYSHPGLKKGQ--EKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQE 771 (929)
Q Consensus 695 ~~~~p~~~~~~--~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~ 771 (929)
.|.++... ...+.+|.|++++++ .++||+|+++|++|++|+ ||++|+++ ||+++||||+|++|||++.
T Consensus 523 ---~~~~~~~~~~~~~~~~G~~vl~~~~---~~~dv~iia~Gs~v~~al~Aa~~L~~~-gi~~~Vv~~~~~kp~d~~~-- 593 (663)
T PRK12753 523 ---LAQQERTPEQVKNIARGGYILKDSG---GKPDLILIATGSEVEITLQAAEKLTAE-GRNVRVVSMPSTDIFDAQD-- 593 (663)
T ss_pred ---CCCCCCcccchhhccCCcEEEeccC---CCCCEEEEEeCHHHHHHHHHHHHHHhc-CCCcEEEECCcCCccchhH--
Confidence 34443321 234667889999863 135999999999999999 99999988 9999999999999998864
Q ss_pred hhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceehe
Q psy2375 772 TERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHM 851 (929)
Q Consensus 772 ~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~ 851 (929)
.+|.++++.....+.|++|+| +++.+.++.+ .+..++|+|+||.||++++|+++||+|+++
T Consensus 594 --------------~~y~~~vl~~~~~~~vtvE~~---~~~~~~~~~~--~~~~~iGvd~Fg~sg~~~~l~~~~Glt~~~ 654 (663)
T PRK12753 594 --------------EAYRESVLPSNVTARVAVEAG---IADYWYKYVG--LKGAIIGMTGFGESAPADKLFPFFGFTVEN 654 (663)
T ss_pred --------------HHHHHhhcccccceEEEEccC---hHHHHHHHcC--CCCeEEEeCCCcCcCCHHHHHHHhCCCHHH
Confidence 367777776532356999998 6788888877 567889999999999999999999999999
Q ss_pred eccccccC
Q psy2375 852 KKIIKVPN 859 (929)
Q Consensus 852 Iv~~al~~ 859 (929)
|+++++..
T Consensus 655 Iv~~i~~~ 662 (663)
T PRK12753 655 IVAKAKKL 662 (663)
T ss_pred HHHHHHHh
Confidence 99887654
No 8
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=4e-102 Score=926.21 Aligned_cols=628 Identities=21% Similarity=0.248 Sum_probs=511.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHHHcCC
Q psy2375 80 LQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAFLEGR 155 (929)
Q Consensus 80 ~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr 155 (929)
+.+.||.++++|+.+|+ +||+|+++|++++..+||.++++ .|+|+++|+||+|+||++|++|+.+++.|+
T Consensus 7 ~~~~iR~~~~~~~~~a~------sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~ 80 (663)
T PRK12754 7 LANAIRALSMDAVQKAK------SGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGY 80 (663)
T ss_pred HHHHHHHHHHHHHHhcC------CCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCC
Confidence 34679999999999998 79999999999999999988887 367789999999999999999999999998
Q ss_pred -CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCC---CCcEEEEEEcCCc
Q psy2375 156 -LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT---INRKIWILCGDGE 231 (929)
Q Consensus 156 -~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~---~~~~v~~~~GDGe 231 (929)
++.++|++|||. ++.+++||.+...|+ ++++||++|+|+++|+|+|+|.|++.+|..... .+++|||++||||
T Consensus 81 ~~~~e~L~~fr~~--gs~~~gHpe~~~~pg-ve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGe 157 (663)
T PRK12754 81 DLPMEELKNFRQL--HSKTPGHPEVGYTAG-VETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (663)
T ss_pred CCCHHHHHHhccC--CCCCCCCCCCCCCCC-ccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcch
Confidence 999999999997 567899998876785 899999999999999999999999876622222 4789999999999
Q ss_pred cCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHH
Q psy2375 232 MDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKK 311 (929)
Q Consensus 232 ~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~ 311 (929)
++||.+|||+++|+++||+|||||||+|+++||||+... ..+++.++|+++||+|++|+
T Consensus 158 l~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~--~~~~~~~r~~a~Gw~vi~vv------------------- 216 (663)
T PRK12754 158 MMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGW--FTDDTAMRFEAYGWHVIRGI------------------- 216 (663)
T ss_pred hhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhc--cCccHHHHHHhcCCeEEeeE-------------------
Confidence 999999999999999999999999999999999999874 46899999999999999932
Q ss_pred HHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 312 IMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 312 ~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
||||+++|++|+++|+...++|++|+++|+|
T Consensus 217 -------------------------------------------------DG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 217 -------------------------------------------------DGHDADSIKRAVEEARAVTDKPSLLMCKTII 247 (663)
T ss_pred -------------------------------------------------CCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Confidence 9999999999999998766899999999999
Q ss_pred ccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHH-------HHHHHh---CCCC
Q psy2375 392 GYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLK-------NCRKKL---GGYL 461 (929)
Q Consensus 392 G~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~-------~~~~~l---~g~~ 461 (929)
|+|.+. +|+.+.+|+. ++++++++..++.++++. .+|+.|++....++-.. +..+.+ ....
T Consensus 248 g~G~~~-~e~~~~~Hg~-~l~~~~~~~~~~~l~~~~-------~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 318 (663)
T PRK12754 248 GFGSPN-KAGTHDSHGA-PLGDAEIALTREQLGWKY-------APFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAY 318 (663)
T ss_pred ccCccc-cCCCccccCC-CCCHHHHHHHHHhcCCCC-------CCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHC
Confidence 999986 7999999986 899999999999999874 25777766332221110 000011 1112
Q ss_pred Ccccccccc--cccCCChHHHhhhhc----c-ccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccch
Q psy2375 462 PKRRQKSDE--KLLIPPLEAFKKILE----P-TLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFR 534 (929)
Q Consensus 462 p~~~~~~~~--~l~~P~~~~f~~~~~----~-~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~ 534 (929)
|+....+.. ...+|. .|...++ . ....+.++||++|+.+|.+|++. .++||++++|++.|+.+. +.
T Consensus 319 p~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~---~~~lv~~sADl~~s~~~~--~~ 391 (663)
T PRK12754 319 PQEAAEFTRRMKGEMPA--DFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPL---LPEFLGGSADLAPSNLTL--WS 391 (663)
T ss_pred HHHHHHHHHHhcCCCch--hHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhh---CCCEEEEeCCcccccCcc--cc
Confidence 221111110 011232 2221110 0 00234679999999999999998 444699999998876531 00
Q ss_pred hcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHH
Q psy2375 535 QIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWL 614 (929)
Q Consensus 535 ~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~ 614 (929)
.. ..|++.+|+||||+||+||+|+++ |+ |||++| +++||+.+|++| ++|+++|+|.
T Consensus 392 ~~------------------~~f~~~~p~r~i~~GIaE~~Mv~i--aa--GlA~~~-G~~Pf~~tf~~F-~~r~~~qir~ 447 (663)
T PRK12754 392 GS------------------KAINEDAAGNYIHYGVREFGMTAI--AN--GIALHG-GFLPYTSTFLMF-VEYARNAVRM 447 (663)
T ss_pred cc------------------ccccccCCCCeEeeccchhhHHHH--Hh--hHHhcC-CCeEEEEeeHHH-HHHHHHHHHH
Confidence 00 135566899999999999998876 54 588876 699999999999 5699999998
Q ss_pred hhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCC
Q psy2375 615 AGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNE 694 (929)
Q Consensus 615 ~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e 694 (929)
+ +++..+|++++||+|+++|+||+|||++||+++||+||||+|++|||+.|++.+++.++++..+| +|||++|.+
T Consensus 448 ~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP---~yirl~R~~- 522 (663)
T PRK12754 448 A-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGP---TALILSRQN- 522 (663)
T ss_pred H-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCC---EEEEeCCCC-
Confidence 7 66667899999999999999999999999999999999999999999999999999999875444 899999875
Q ss_pred CCCCCCCCc--ccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhh
Q psy2375 695 NYSHPGLKK--GQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQE 771 (929)
Q Consensus 695 ~~~~p~~~~--~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~ 771 (929)
.|.++. .....+.+|+|++++++ .++||+||++|++|.+|+ ||++|+++ ||+++||||+|++|||++
T Consensus 523 ---~p~~~~~~~~~~~~~~G~~vl~~~~---~~~dv~iiatGs~v~~Al~Aa~~L~~~-Gi~~~Vvs~~s~kp~d~q--- 592 (663)
T PRK12754 523 ---LAQQERTEEQLANIARGGYVLKDCA---GQPELIFIATGSEVELAVAAYEKLTAE-GVKARVVSMPSTDAFDKQ--- 592 (663)
T ss_pred ---CCCCCCccchhhhcccCcEEEEecC---CCCCEEEEEECHHHHHHHHHHHHHHhh-CCCcEEEEcCccCcCCCC---
Confidence 344432 11235778889998863 125999999999999999 99999987 999999999999999874
Q ss_pred hhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceehe
Q psy2375 772 TERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHM 851 (929)
Q Consensus 772 ~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~ 851 (929)
+.+|.+++|.....+.|++|.. .+..|.+|+.. .-..+|+|+||.||+.++|+++||++++.
T Consensus 593 -------------~~~y~~~il~~~~~~~v~iE~~---~~~~w~~~~~~--~~~~igi~~FG~Sg~~~~l~~~~G~t~e~ 654 (663)
T PRK12754 593 -------------DAAYRESVLPKAVSARVAVEAG---IADYWYKYVGL--NGAIVGMTTFGESAPAELLFEEFGFTVDN 654 (663)
T ss_pred -------------CHHHHHhcCccccccceEeecc---cccchhhhccC--CCCEEEeCCCCCCCCHHHHHHHhCCCHHH
Confidence 4689999998763367999985 55667788763 22358999999999999999999999999
Q ss_pred eccccccC
Q psy2375 852 KKIIKVPN 859 (929)
Q Consensus 852 Iv~~al~~ 859 (929)
|++++...
T Consensus 655 I~~~~~~~ 662 (663)
T PRK12754 655 VVAKAKAL 662 (663)
T ss_pred HHHHHHHh
Confidence 99987654
No 9
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.8e-99 Score=909.61 Aligned_cols=626 Identities=21% Similarity=0.245 Sum_probs=507.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHHHcCC
Q psy2375 80 LQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAFLEGR 155 (929)
Q Consensus 80 ~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr 155 (929)
+.+.||+++++|+.+|+ +||+|+++|+++++.+||.++++ .|+|+++|+||+|+||++|++||.+++.|+
T Consensus 3 ~~~~iR~~~~~~~~~a~------~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~ 76 (653)
T TIGR00232 3 LANAIRHLAVDAIQKAK------SGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGY 76 (653)
T ss_pred HHHHHHHHHHHHHHhcC------CCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCC
Confidence 34679999999999998 79999999999999999988887 467789999999999999999999999999
Q ss_pred C-CHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc---cCCCCcEEEEEEcCCc
Q psy2375 156 L-TEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI---TNTINRKIWILCGDGE 231 (929)
Q Consensus 156 ~-~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~---~~~~~~~v~~~~GDGe 231 (929)
+ +.|+|++||+. ++.+++||.+...|+ ++++||++|+|+++|+|+|.+.|++..+.- .+..+++|||++||||
T Consensus 77 ~~~~e~L~~fr~~--~s~~~ghp~~~~~~g-i~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~ 153 (653)
T TIGR00232 77 DLSIEDLKQFRQL--HSKTPGHPEFGHTAG-VEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGC 153 (653)
T ss_pred CCCHHHHHhcccC--CCCCCCCCCCCCCCC-eeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccc
Confidence 6 99999999997 567899998866675 899999999999999999999999876511 1235789999999999
Q ss_pred cCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHH
Q psy2375 232 MDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKK 311 (929)
Q Consensus 232 ~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~ 311 (929)
++||.+|||+++|++++|+|||+|||+|.++||||+... ..+++.++|+++||+|++|.
T Consensus 154 l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~--~~~~~~~~~~a~Gw~~~~v~------------------- 212 (653)
T TIGR00232 154 LQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGS--FTEDVAKRFEAYGWEVLEVE------------------- 212 (653)
T ss_pred ccccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccccccc--cCccHHHHHHhcCCcEEEeC-------------------
Confidence 999999999999999999999999999999999999875 36889999999999999983
Q ss_pred HHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 312 IMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 312 ~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
||||+.+|++|+++|++.+++|++|+|+|+|
T Consensus 213 -------------------------------------------------DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~ 243 (653)
T TIGR00232 213 -------------------------------------------------DGHDLAAIDAAIEEAKASKDKPTLIEVTTTI 243 (653)
T ss_pred -------------------------------------------------CCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 8999999999999998765699999999999
Q ss_pred ccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHH-H-----------HHHHHhCC
Q psy2375 392 GYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYL-K-----------NCRKKLGG 459 (929)
Q Consensus 392 G~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~-~-----------~~~~~l~g 459 (929)
|+|++. .|+.+.+|+. ++++++++++++.++++. .||..|++....++.. . ++-+++..
T Consensus 244 g~G~~~-~e~~~~~H~~-~~~~~~~~~~~~~l~~~~-------~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 314 (653)
T TIGR00232 244 GFGSPN-KAGTHGVHGA-PLGDEDVKLTKKNLGWNY-------NPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKK 314 (653)
T ss_pred cccCcc-cCCCCcccCC-CCCHHHHHHHHHHhCCCC-------CCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999986 7999999987 899999999999999863 3677776543322110 0 01111111
Q ss_pred CCCcccccccccc--cCCChHHHhhhhccc-cccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhc
Q psy2375 460 YLPKRRQKSDEKL--LIPPLEAFKKILEPT-LNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQI 536 (929)
Q Consensus 460 ~~p~~~~~~~~~l--~~P~~~~f~~~~~~~-~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~ 536 (929)
..|+....+...+ .+|. .|...++.. ..+++.+||.+|+++|.+|++. .++||++++|++.|+++.. +.
T Consensus 315 ~~p~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~---~p~iv~lsaDl~~s~~~~~-~~-- 386 (653)
T TIGR00232 315 KYPELAAEFTRRLSGELPA--DWDKKLPEFKAKLQALATRKYSQNVLNAIANV---LPELLGGSADLAPSNLTKW-KG-- 386 (653)
T ss_pred HCHHHHHHHHHHHhccCch--hhhhhhhhhhccCcchHHHHHHHHHHHHHHhh---CCCEEEEeCCccccCCccc-cc--
Confidence 1222111111011 1222 122111111 0235679999999999999988 3446999999988866541 10
Q ss_pred ccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhh
Q psy2375 537 GIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAG 616 (929)
Q Consensus 537 gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~ 616 (929)
. ..|++.+|+||||+||+||+|+++ |+ |||.+| |++||+.+|++| ++|+.+|++++
T Consensus 387 -----------~------~~f~~~~p~rfi~~GIaEq~mv~~--Aa--GlA~~g-G~~p~~~tf~~F-~~r~~~~ir~~- 442 (653)
T TIGR00232 387 -----------S------GDLHENPLGNYIHYGVREFAMGAI--MN--GIALHG-GFKPYGGTFLMF-VDYARPAIRLA- 442 (653)
T ss_pred -----------c------cchhhcCCCCeEeecccHHHHHHH--HH--HHHHcC-CCeEEEEEhHHH-HHHHHHHHHHH-
Confidence 0 016678999999999999999886 55 488866 699999999999 57999999988
Q ss_pred hhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q psy2375 617 DIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENY 696 (929)
Q Consensus 617 ~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~ 696 (929)
+++..+|++++||+|+++|+||+|||+++|++++|++|||+|++|||++|++.+++.+++...+ |+|||++|.+
T Consensus 443 a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~~g---P~~irl~r~~--- 516 (653)
T TIGR00232 443 ALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQDG---PTALILSRQN--- 516 (653)
T ss_pred HhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCC---cEEEEEcCCc---
Confidence 5666789999999999999999999999999999999999999999999999999999965433 3999999875
Q ss_pred CCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhh
Q psy2375 697 SHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERW 775 (929)
Q Consensus 697 ~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~ 775 (929)
.|.+++.....+..|.|++++. +|+||+|+++|++|.+|+ ||++|+++ ||+++|||++|++|||++.
T Consensus 517 -~~~~~~~~~~~~~~G~~vl~~~----~g~dv~iia~G~~v~~al~Aa~~L~~~-Gi~~~VI~~~~ikpld~~~------ 584 (653)
T TIGR00232 517 -LPQLEESSLEKVLKGGYVLKDS----KGPDIILIATGSEVSLAVEAAKKLAAE-NIKVRVVSMPSFDLFDKQD------ 584 (653)
T ss_pred -cCCCCcccccccCCCcEEEEec----CCCCEEEEEeChHHHHHHHHHHHHHhc-CCcEEEEecccCcccccCC------
Confidence 3444332213466788999543 257999999999999999 99999988 9999999999999998753
Q ss_pred hccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccc
Q psy2375 776 NMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKII 855 (929)
Q Consensus 776 ~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~ 855 (929)
.+|+.++++.+ +++||+|||+.. .+..+++ ....++|+|.||.||++++|+++||||+++|+++
T Consensus 585 ----------~~~~~~~~~~~-~~vvtvEe~~~~---g~~~~~~--~~~~~igvd~fg~sg~~~~L~~~~Glt~e~I~~~ 648 (653)
T TIGR00232 585 ----------EEYRESVLPAN-VTRLAVEAGAAD---EWYKYAG--LVGAILGMDSFGESAPGDKLFEEFGFTVENVVAK 648 (653)
T ss_pred ----------HHHHHHHhccc-CceEEEecccHh---HHHHhcC--CcceEEEecCCcCCCCHHHHHHHhCCCHHHHHHH
Confidence 57888998887 789999999651 2223443 2226799999999999999999999999999988
Q ss_pred cccC
Q psy2375 856 KVPN 859 (929)
Q Consensus 856 al~~ 859 (929)
+...
T Consensus 649 i~~~ 652 (653)
T TIGR00232 649 AKKL 652 (653)
T ss_pred HHHh
Confidence 7654
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=6.1e-98 Score=897.54 Aligned_cols=628 Identities=21% Similarity=0.317 Sum_probs=498.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 75 KIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 75 ~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
.+++++.+.||.++++||.+++ |||+|+++|+++++.+||..+++ .|+|+++|+||||+||++|++|+++
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~------~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l 77 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKAN------SGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSML 77 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC------CCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHH
Confidence 3445555789999999999988 89999999999999999987654 3677889999999999999999999
Q ss_pred HHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcccc---CCCCcEEEEE
Q psy2375 151 FLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKIT---NTINRKIWIL 226 (929)
Q Consensus 151 ~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~---~~~~~~v~~~ 226 (929)
+++|| ++.++|++||+. ++.+++||.+..+|+ ++++|||+|+|+++|+|+|+|.|++..+... +..+++|||+
T Consensus 78 ~l~G~~~~~~~l~~fr~~--~s~~~ghp~~~~~~g-v~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v 154 (661)
T PTZ00089 78 HLTGYDLSMEDLKNFRQL--GSRTPGHPERHITPG-VEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVI 154 (661)
T ss_pred HHcCCCCCHHHHHhcCCC--CCCCCCCCCCCCCCC-cccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEE
Confidence 99999 999999999997 556789999888885 8999999999999999999999987654111 1237899999
Q ss_pred EcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCch
Q psy2375 227 CGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306 (929)
Q Consensus 227 ~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~ 306 (929)
+||||++||.+|||+++|+.++|+|||||||+|+++||+|+... ..+++.++|+++||+++.|+
T Consensus 155 ~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~--~~~~~~~~f~a~G~~~i~v~-------------- 218 (661)
T PTZ00089 155 CGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLS--FTEDVEKKYEAYGWHVIEVD-------------- 218 (661)
T ss_pred ECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccc--cCccHHHHHHhcCCcEEEeC--------------
Confidence 99999999999999999999999999999999999999999863 56889999999999999984
Q ss_pred hHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC-cHHHHHHHHHHHHhCCCCCeEE
Q psy2375 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH-DLRKIYSAFKMAQKNKDKPTVL 385 (929)
Q Consensus 307 ~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh-D~~~v~~a~~~a~~~~~~P~vI 385 (929)
||| |+++|++|+++|++..++|++|
T Consensus 219 ------------------------------------------------------dG~~D~~~l~~a~~~a~~~~~~P~~I 244 (661)
T PTZ00089 219 ------------------------------------------------------NGNTDFDGLRKAIEEAKKSKGKPKLI 244 (661)
T ss_pred ------------------------------------------------------CCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 899 9999999999998766799999
Q ss_pred EEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHH------------HHHHH
Q psy2375 386 LIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQ------------YLKNC 453 (929)
Q Consensus 386 ~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~------------~~~~~ 453 (929)
+++|+||+|+ .++++..+|+. +++.++++.+++.++++.. .+|..+++....++ |....
T Consensus 245 ~~~T~kG~G~--~~e~~~~~H~~-~~~~~~~~~~~~~l~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 315 (661)
T PTZ00089 245 IVKTTIGYGS--SKAGTEKVHGA-PLGDEDIAQVKELFGLDPE------KKFHVSEEVRQFFEQHVEKKKENYEAWKKRF 315 (661)
T ss_pred EEEeeecCCC--CcCCCCCccCC-CCCHHHHHHHHHHhCCCCC------CCCCCCHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999994 48999999987 8999999999999988531 35776543321111 11000
Q ss_pred HHHhCCCCCcccccccccc--cCCChHHHhhhhccc-cccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCcc
Q psy2375 454 RKKLGGYLPKRRQKSDEKL--LIPPLEAFKKILEPT-LNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGME 530 (929)
Q Consensus 454 ~~~l~g~~p~~~~~~~~~l--~~P~~~~f~~~~~~~-~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~ 530 (929)
.+.+ ...|+....+...+ .+|. .+...++.. ..++..+||++|+++|.++++. .+.++.+++|++.|+.+.
T Consensus 316 ~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~---~~~~~~~saDl~~s~~~~ 389 (661)
T PTZ00089 316 AKYT-AAFPKEAQAIERRFKGELPP--GWEKKLPKYTTNDKAIATRKASENVLNPLFQI---LPELIGGSADLTPSNLTR 389 (661)
T ss_pred HHHH-HHCHHHHHHHHHHhccCCch--hhhhhhhhhcccCcchHHHHHHHHHHHHHHhh---CCCeEEEECCCCcccCcC
Confidence 0000 00111100000000 0111 111111100 0234679999999999999987 333599999998876432
Q ss_pred ccchhcccccccCcccccCChhhhhHHHhhcC-CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHH
Q psy2375 531 GLFRQIGIFSQVGQLYDPVDKDQVIYYREEKN-GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIG 609 (929)
Q Consensus 531 ~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~-gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~ 609 (929)
.+ ....|++.+| +||||+||+||+|+++ |+| ||.+| |++||+.+|++| ++|++
T Consensus 390 --~~------------------~~~~f~~~~P~~rfi~~GIaEq~mv~~--AaG--lA~~~-G~~P~~~tf~~F-l~Ra~ 443 (661)
T PTZ00089 390 --PK------------------EANDFTKASPEGRYIRFGVREHAMCAI--MNG--IAAHG-GFIPFGATFLNF-YGYAL 443 (661)
T ss_pred --Cc------------------ccccccccCCCCCeeeeeecHHHHHHH--HHH--HHHcC-CCeEEEEehHHH-HHHHH
Confidence 00 0012556678 8999999999999987 555 88866 699999999999 68999
Q ss_pred HHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 610 DLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 610 d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
||++.+ +++..+|++++||+|+++|+||+|||+++|++++|+||||+|++|+|++|+..+++.++....+| +|||+
T Consensus 444 dqir~~-al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP---~~irl 519 (661)
T PTZ00089 444 GAVRLA-ALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALALANAKTP---TILCL 519 (661)
T ss_pred HHHHHH-HhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCC---EEEEe
Confidence 998888 66667899999999999999999999999999999999999999999999999999999664343 99999
Q ss_pred ecCCCCCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccc
Q psy2375 690 TVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARD 768 (929)
Q Consensus 690 ~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~ 768 (929)
+|.+ .|.++......+.+|.|++++++ .++|++||++|++|.+|+ ||+.|++ ||+++|||++|+||||++
T Consensus 520 ~R~~----~~~~~~~~~~~~~~g~~vl~~~~---~~~dv~iia~G~~v~~Al~Aa~~L~~--Gi~~~Vv~~~~ikp~d~~ 590 (661)
T PTZ00089 520 SRQN----TPPLPGSSIEGVLKGAYIVVDFT---NSPQLILVASGSEVSLCVEAAKALSK--ELNVRVVSMPCWELFDQQ 590 (661)
T ss_pred cCCC----CCCcCCCccccccCceEEEeccC---CCCCEEEEeeCHHHHHHHHHHHHHhc--CCCeEEEeCCCccHHHHH
Confidence 9875 34443322233667889998752 136999999999999999 9999977 999999999999999886
Q ss_pred hhhhhhhhccCCCccchHHHHHHHhc-cCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcc
Q psy2375 769 GQETERWNMLHPTKKQKVAYITKSLE-KSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFEN 847 (929)
Q Consensus 769 ~~~~~~~~~l~p~~~~~~~~~~~~l~-~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgl 847 (929)
.+ .|...++. +. ..+|++|+|.. ..+..+. ..++|++.||.||++++|+++|||
T Consensus 591 ~~----------------~~~~~v~~e~~-~~~vtiE~~~~---~g~~~~~-----~~~igv~~Fg~sg~~~~l~~~~Gl 645 (661)
T PTZ00089 591 SE----------------EYQQSVLPSGG-VPVLSVEAYVS---FGWEKYS-----HVHVGISGFGASAPANALYKHFGF 645 (661)
T ss_pred HH----------------HHHHHhcCCCC-CceEeHHhhHH---HHHHhcC-----CeEEECCCccccCCHHHHHHHhCC
Confidence 53 45555665 44 57999999843 1122222 147999779999999999999999
Q ss_pred eeheeccccccCc
Q psy2375 848 IIHMKKIIKVPNI 860 (929)
Q Consensus 848 dae~Iv~~al~~L 860 (929)
|+++|+++++..+
T Consensus 646 ~~e~I~~~i~~~l 658 (661)
T PTZ00089 646 TVENVVEKARALA 658 (661)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887654
No 11
>PLN02790 transketolase
Probab=100.00 E-value=1.1e-97 Score=894.27 Aligned_cols=625 Identities=20% Similarity=0.254 Sum_probs=500.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHHHcCC--CC
Q psy2375 84 IRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAFLEGR--LT 157 (929)
Q Consensus 84 iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr--~~ 157 (929)
||.++++||.+|+ +||+|+++|+++|+.+||..+++ .|+|+++|+||||+||++|++|++++++|+ ++
T Consensus 1 iR~~~~~~~~~a~------~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 74 (654)
T PLN02790 1 IRFLAIDAVNKAN------SGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 74 (654)
T ss_pred ChHHHHHHHHhcC------CCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCC
Confidence 6899999999998 79999999999999999988766 367789999999999999999999999999 79
Q ss_pred HHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCC-----CCcEEEEEEcCCcc
Q psy2375 158 EEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT-----INRKIWILCGDGEM 232 (929)
Q Consensus 158 ~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~-----~~~~v~~~~GDGe~ 232 (929)
+++|++|||. ++.+++||.+..+|+ ++++|||+|+|+++|+|+|+|.|++.++ .++ .+++|||++||||+
T Consensus 75 ~~~l~~~r~~--~s~~~ghp~~~~~pg-i~~~tG~lG~gl~~A~G~A~A~k~~~~~--~~~~~~~~~~~~v~~~~GDG~l 149 (654)
T PLN02790 75 MEDLKQFRQW--GSRTPGHPENFETPG-IEVTTGPLGQGIANAVGLALAEKHLAAR--FNKPDHKIVDHYTYCILGDGCQ 149 (654)
T ss_pred HHHHHHhccC--CCCCCCCCCCCCCCC-ccccCCchhchHHHHHHHHHHHHHHHHH--hCCCcccccCCEEEEEECcCcc
Confidence 9999999997 556679999988885 8999999999999999999999988664 122 37899999999999
Q ss_pred CCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHH
Q psy2375 233 DEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKI 312 (929)
Q Consensus 233 ~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~ 312 (929)
+||++|||+|+|++++|+|||+|||+|+++||+|+.. ...+++.++|+++||+++.|+
T Consensus 150 ~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~--~~~~~~~~~f~a~G~~~~~vd-------------------- 207 (654)
T PLN02790 150 MEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEI--AFTEDVDKRYEALGWHTIWVK-------------------- 207 (654)
T ss_pred cchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccc--ccchhHHHHHHHcCCeEEEEC--------------------
Confidence 9999999999999999999999999999999999986 356889999999999999983
Q ss_pred HHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 313 MMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 313 ~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
|| ||+++|++|+++|++..++|++|+++|+|
T Consensus 208 ------------------------------------------------gg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~k 239 (654)
T PLN02790 208 ------------------------------------------------NGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTI 239 (654)
T ss_pred ------------------------------------------------CCCCCHHHHHHHHHHHHhcCCCeEEEEEEEee
Confidence 55 89999999999998755899999999999
Q ss_pred ccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHH--------HHHHHhCC---C
Q psy2375 392 GYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLK--------NCRKKLGG---Y 460 (929)
Q Consensus 392 G~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~--------~~~~~l~g---~ 460 (929)
|+|+++ +|+++.||+. +++.++++..++.++++. .||..+.+....++-.. +..+.++. .
T Consensus 240 G~G~~~-~e~~~~~H~~-~~~~~~~~~~~~~l~~~~-------~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 310 (654)
T PLN02790 240 GYGSPN-KANSYSVHGA-ALGEKEVDATRKNLGWPY-------EPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKK 310 (654)
T ss_pred cCCCcc-ccCCCCcCCC-CCCHHHHHHHHHHhCCCC-------CCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Confidence 999997 8999999997 899999999999999863 36777654322111000 00111110 0
Q ss_pred CCcccccccc--cccCCChHHHhhhhccc-cccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcc
Q psy2375 461 LPKRRQKSDE--KLLIPPLEAFKKILEPT-LNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIG 537 (929)
Q Consensus 461 ~p~~~~~~~~--~l~~P~~~~f~~~~~~~-~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~g 537 (929)
.|+......+ ....|. .|...++.. ..++..+||.+|++.|..+++. .++|+.+++|++.++++. +.
T Consensus 311 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~---~p~iv~gsaDl~~s~~t~--~~--- 380 (654)
T PLN02790 311 YPEEAAELKSLISGELPS--GWEKALPTFTPEDPADATRNLSQKCLNALAKV---LPGLIGGSADLASSNMTL--LK--- 380 (654)
T ss_pred CHHHHHHHHHHhccCCch--hhhhhhhhhcccCcchHHHHHHHHHHHHHHhh---CCCeEEEECCCCcccccc--cc---
Confidence 1110000000 001111 121111111 0234579999999999999888 334589999998875431 00
Q ss_pred cccccCcccccCChhhhhHHHhh-cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhh
Q psy2375 538 IFSQVGQLYDPVDKDQVIYYREE-KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAG 616 (929)
Q Consensus 538 i~~~~gq~~~~~d~~~~~~~~e~-~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~ 616 (929)
.+..|++. +|+||||+||+||+|+++ |+| ||.+|.|++||+.+|++|. .|+.++++++
T Consensus 381 ---------------~~~~f~~~~~p~Rfi~~GIaEq~mv~~--AaG--lA~~G~G~~P~~~tf~~F~-~~~~~~ir~~- 439 (654)
T PLN02790 381 ---------------DFGDFQKDTPEERNVRFGVREHGMGAI--CNG--IALHSSGLIPYCATFFVFT-DYMRAAMRLS- 439 (654)
T ss_pred ---------------cchhhhhcCCCCCeEEeeechHHHHHH--HHH--HHhcCCCcEEEEEecHHHH-HHHHHHHHHH-
Confidence 01135565 699999999999999887 554 8887555999999999996 4999999888
Q ss_pred hhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q psy2375 617 DIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENY 696 (929)
Q Consensus 617 ~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~ 696 (929)
+++..+|++++||+|+++|+||+|||+++|++++|+||||+|++|||++|++.+++.++....+| +|||++|.+
T Consensus 440 al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~gP---~~irl~R~~--- 513 (654)
T PLN02790 440 ALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRKRP---TVLALSRQK--- 513 (654)
T ss_pred HhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCCCC---EEEEecCCC---
Confidence 55566799999999999999999999999999999999999999999999999999999854343 999999875
Q ss_pred CCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhh
Q psy2375 697 SHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERW 775 (929)
Q Consensus 697 ~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~ 775 (929)
.|.++....+.+..|.|++++++. +.++||+|+++|++|.+|+ ||++|+++ ||+++|||++|++|||++.
T Consensus 514 -~~~~~~~~~~~~~~G~~vl~~~~~-~~~~dv~iia~G~~v~~Al~Aa~~L~~~-gi~~~VV~~~~ikpld~~~------ 584 (654)
T PLN02790 514 -VPNLPGTSIEGVEKGGYVISDNSS-GNKPDLILIGTGSELEIAAKAAKELRKE-GKKVRVVSMVCWELFEEQS------ 584 (654)
T ss_pred -CCCCCCCcccccccCcEEEEeCCC-CCCCCEEEEEcCHHHHHHHHHHHHHHhc-CCceEEEecCccchhhhhH------
Confidence 344433222346678899987531 0126999999999999999 99999998 9999999999999998754
Q ss_pred hccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccc
Q psy2375 776 NMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKII 855 (929)
Q Consensus 776 ~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~ 855 (929)
..|.++++.....++||+|+|.. .+ +.++++ .+..++|+|.||.||++++|+++||||+++|+++
T Consensus 585 ----------~~y~~~~~~~~~~~vvtiE~~~~-~G--~~~~~~--~~~~~igvd~Fg~sg~~~~l~~~~Glt~e~I~~~ 649 (654)
T PLN02790 585 ----------DEYKESVLPSSVTARVSVEAGST-FG--WEKYVG--SKGKVIGVDRFGASAPAGILYKEFGFTVENVVAA 649 (654)
T ss_pred ----------HHHHHhhhccccceEEEecCccc-hh--HHHhcC--CCceEEEeCCCcCcCCHHHHHHHhCCCHHHHHHH
Confidence 46777888333368999999965 22 345655 4557899999999999999999999999999988
Q ss_pred cccC
Q psy2375 856 KVPN 859 (929)
Q Consensus 856 al~~ 859 (929)
++..
T Consensus 650 i~~~ 653 (654)
T PLN02790 650 AKSL 653 (654)
T ss_pred HHHh
Confidence 7654
No 12
>KOG0523|consensus
Probab=100.00 E-value=3.3e-97 Score=834.57 Aligned_cols=609 Identities=24% Similarity=0.313 Sum_probs=505.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCC----CCCCCCCcEEEeCCCchHHHHHHHH
Q psy2375 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA----PTHSHGGDLIYIQGHSAPGVYARAF 151 (929)
Q Consensus 76 l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~----p~~~~~dd~i~~~GH~ap~~Ya~~~ 151 (929)
......+.||-..++++.+|+ .||+++++|+++...+||.++++. |.|.++|+||||+||+||.+||+++
T Consensus 9 ~~~~~~n~lri~si~~~~~a~------sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~ 82 (632)
T KOG0523|consen 9 ILKDAVNNLRILSIDATSAAK------SGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWH 82 (632)
T ss_pred hhHHHhhhhhhhhHHHHHhhh------cCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHH
Confidence 334455789999999999999 599999999999999999998873 5667899999999999999999999
Q ss_pred HcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCc
Q psy2375 152 LEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGE 231 (929)
Q Consensus 152 l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe 231 (929)
|+|.+++|+|.+|||. ++-+++||.|++ | +++|.|||+|+|++.|+|||.+.||+. ..+++|+|++||||
T Consensus 83 l~G~~~~edl~~~Rq~--~s~t~ghp~~~~-~-~v~v~TG~lgQgis~a~GmA~~~k~~~------k~~~rv~~vlGDG~ 152 (632)
T KOG0523|consen 83 LAGYDREEDLKNFRQI--GSDTPGHPEPEL-P-GVEVATGPLGQGISNAVGMAYAGKHLG------KASNRVYCVLGDGC 152 (632)
T ss_pred HhccCcHHHHHHHHhh--CCCCCCCCcccC-C-CceeccCCccchHHHHHHHHHHHHhhc------cccceEEEEEcCch
Confidence 9999999999999997 556788998764 6 699999999999999999999999863 35789999999999
Q ss_pred cCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHH-HHhhCCceEEEEecccchhhhhhcCchhHHH
Q psy2375 232 MDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEA-HFYGVGWNVIKVIWSSSWDKLLKCDQNGILK 310 (929)
Q Consensus 232 ~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~-~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~ 310 (929)
++||.+|||+++|++++|||||+|+|+|..+|||++.. ...+++++ +|.++|||++.|
T Consensus 153 ~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~--~~~~dV~~~r~ea~g~~~~~V------------------- 211 (632)
T KOG0523|consen 153 LTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSL--GFDEDVYQLRFEAFGWNVIIV------------------- 211 (632)
T ss_pred hccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcc--cccccHHHHHHHHhCceEEEE-------------------
Confidence 99999999999999999999999999999999999986 36678888 999999999998
Q ss_pred HHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 311 KIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 311 ~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
+|||+++|.+||.+|+..+++||+|.++|.
T Consensus 212 --------------------------------------------------~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~ 241 (632)
T KOG0523|consen 212 --------------------------------------------------DGGDVDEIRKAIGKAKSVKGKPTAIKATTF 241 (632)
T ss_pred --------------------------------------------------cCcCHHHHHHHHhhhhhccCCceeeeeeee
Confidence 899999999999999988899999999999
Q ss_pred cccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccc
Q psy2375 391 KGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDE 470 (929)
Q Consensus 391 KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~ 470 (929)
||+|... .+...+|+. ++.++++++.+..+++|. ..|+.+++...--+.-.+-.+++...+|.-+..
T Consensus 242 ~g~G~~~--ig~~~~Hg~-pl~~~~~~~~k~~~~~P~-------~~~~v~~~~~~~p~~~~~~~~~~~~~i~~~~~~--- 308 (632)
T KOG0523|consen 242 IGRGSPY--IGSESVHGA-PLGEDDVERVKSIKGLPV-------LIFVVPEKVKLYPEKPVEDARAISVRIPKIWEK--- 308 (632)
T ss_pred eecCccc--cccccccCC-cchhhHHHHHHhhcCCcc-------eeEEeccccccCCCcccccccccccCcCccccc---
Confidence 9999886 448899997 899999999999999975 345554432100000000000121222222111
Q ss_pred cccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCC
Q psy2375 471 KLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVD 550 (929)
Q Consensus 471 ~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d 550 (929)
..|. |. .+++.++||.+|+.+|.+|++. ++|||++++|+..|+.++
T Consensus 309 --~~p~---yk------~~Dk~~Atrk~~~~aL~~l~~~---~~~vI~~~ad~~~st~td-------------------- 354 (632)
T KOG0523|consen 309 --SLPT---YK------VGDKAVATRKAFGEALAALAEA---DPRVIGGSADLKNSTLTD-------------------- 354 (632)
T ss_pred --cCCc---cc------cCChhhhHHHHHHHHHHHHhhc---CcCeEEEecccCCCchhh--------------------
Confidence 1121 21 1456699999999999999997 566799999998876443
Q ss_pred hhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecC
Q psy2375 551 KDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSG 630 (929)
Q Consensus 551 ~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~ 630 (929)
++++.+|+|||++||+||||+++ + +|+|.+| ..+||+.+|+.| ++|++||++++++.+. ++++++||+
T Consensus 355 -----~~~~~~p~R~i~~giaEq~mv~i--a--~G~a~~g-~~~Pf~~tf~~F-~trA~dqvr~~a~s~~-~v~~v~th~ 422 (632)
T KOG0523|consen 355 -----FFPKRFPERFIECGIAEQNMVGI--A--NGIACRG-RTIPFCGTFAAF-FTRAFDQVRMGALSQA-NVIYVATHD 422 (632)
T ss_pred -----hccccCccceEEEeeehhhhHHh--h--hchhcCC-CccchhHHHHHH-HHHhhhheeehhhccC-CcEEEEEec
Confidence 56688999999999999999987 4 4589999 379999999999 9999999999988776 688889999
Q ss_pred CeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccc
Q psy2375 631 RTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGII 710 (929)
Q Consensus 631 ~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~ 710 (929)
++.+|+||||||++||+++||++|||+|++|+|++|+..++..|+... +.+..++++|.| .|.++....+.+.
T Consensus 423 ~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~---~~p~i~~~~r~~----~~~~~~~~~~~ig 495 (632)
T KOG0523|consen 423 SIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTK---GTPSIRTLSRQN----LPIYNNTEIEEIG 495 (632)
T ss_pred cccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHHHhcC---CCeeEEEecCcc----ccccCCCchhhhc
Confidence 999999999999999999999999999999999999999999999883 334666777765 4666555567899
Q ss_pred cceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHH
Q psy2375 711 KGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYI 789 (929)
Q Consensus 711 ~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~ 789 (929)
+|.|++.+.+ +||+||++|++|++|+ ||++|+++ ||+++|+|.++|||||...+
T Consensus 496 kg~~vl~~~~-----~dV~LiG~Gs~v~~cl~AA~~L~~~-gi~vrVvd~~~~kplD~~li------------------- 550 (632)
T KOG0523|consen 496 KGKYVLQEVE-----PDVILIGTGSEVQECLEAAELLSED-GIKVRVVDPFTWKPLDVALI------------------- 550 (632)
T ss_pred cccEEEecCC-----CCEEEEeccHHHHHHHHHHHHHHhc-CceEEEecccceeecchHHh-------------------
Confidence 9999999863 6999999999999999 99999988 99999999999999997543
Q ss_pred HHHhccCCCcEEEEecccch--hHHHHHhhccC--CCcEEEEecCcccccCChhhHHhhhcceeheeccccccCcCC
Q psy2375 790 TKSLEKSIGPIIVATDYMRL--FAEQVRAFIPK--GRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNIGD 862 (929)
Q Consensus 790 ~~~l~~~~~~vVtved~~~~--~~~~i~~~l~~--~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~LG~ 862 (929)
.+..+.+...++++|||+.+ +..+....... +.....+|+|+||+||+..+|+++||+++++|+.+++..++.
T Consensus 551 ~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~~~~~~~~~sG~p~ell~~fGit~~~Ia~~a~~~~~~ 627 (632)
T KOG0523|consen 551 RSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILVPSLGVDTFGRSGPPPELLKMFGITARHIAAAALSLIGK 627 (632)
T ss_pred hhhhcccceeEEEccCCCCCcchhheeeehhcccCCccceeeccccCCcCCCCHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 44445555778889999763 23332111111 133467999999999999999999999999999999988864
No 13
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.5e-94 Score=818.53 Aligned_cols=614 Identities=19% Similarity=0.179 Sum_probs=501.0
Q ss_pred cccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcE
Q psy2375 56 TAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDL 135 (929)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~ 135 (929)
||+|+.|..|.+.+..+.+||+++| ++||..+++.|++. |||+|+++|++||+.+|| ++|+.| .|.+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La-~EiR~~li~~vS~~-------GGHlgsnLGvVELTiALH-~VF~sP----~D~~ 68 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLA-DEIREFLLEVVSAT-------GGHLGSNLGVVELTIALH-YVFDSP----KDKL 68 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHH-HHHHHHHHHHhccC-------CCccCCCcChhhhhHHHH-HHhCCC----CCCe
Confidence 7899999999999999999999999 58999999999984 899999999999999995 479987 6899
Q ss_pred EEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc
Q psy2375 136 IYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI 215 (929)
Q Consensus 136 i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~ 215 (929)
||++|||| |+|++|+||. +++.+.||+ +|||+||.|.+++ |+.|.+||.++++|.|+|+|.|.+.
T Consensus 69 IwDVgHQa---YpHKiLTGR~--e~f~tlRq~---~GlsGf~~r~ESe-~D~f~~GHsSTSiSaalG~A~A~~~------ 133 (627)
T COG1154 69 IWDVGHQA---YPHKILTGRR--EQFDTLRQK---DGLSGFPKREESE-HDWFGVGHSSTSISAALGMAKARDL------ 133 (627)
T ss_pred EEecCccc---chhHHhcCch--hhcchhhhc---CCCCCCCCcccCC-CcccccCchHHHHHHHhhHHHHHHh------
Confidence 99999999 9999999995 899999998 9999999999976 8999999999999999999977664
Q ss_pred cCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEeccc
Q psy2375 216 TNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSS 295 (929)
Q Consensus 216 ~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~ 295 (929)
++++++|+|+||||+|+.|++|||||+|+...-.|||+|+|||.|||+.||++..+ .|.+...+--++-++ .
T Consensus 134 -~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~---~L~~l~~~~~y~~~~----~ 205 (627)
T COG1154 134 -KGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSK---HLARLRSGPFYQSLR----E 205 (627)
T ss_pred -cCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHH---HHHHHhccchHHHHH----H
Confidence 45789999999999999999999999999433278999999999999999998543 333322221122111 1
Q ss_pred chhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccC-CCCCCcHHHHHHHHHH
Q psy2375 296 SWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-TFGGHDLRKIYSAFKM 374 (929)
Q Consensus 296 ~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l-~~dGhD~~~v~~a~~~ 374 (929)
.-+.++.+ .+..+.+.|.++.++.+..+... .++| +|+ +.|+ |+||||+++|..+++.
T Consensus 206 ~~kk~l~~-~~~~~~~~~~r~e~~~K~l~~~~---~lFe--------------elG---f~YiGPiDGHni~~Li~~Lk~ 264 (627)
T COG1154 206 GGKKVLSK-VGPPLKRFAKRAEESIKGLLVPG---TLFE--------------ELG---FNYIGPIDGHNLEELIPTLKN 264 (627)
T ss_pred HHHHHHHh-hchHHHHHHHHHHHhhhcccCch---hhHH--------------HhC---CeeECCcCCCCHHHHHHHHHH
Confidence 11233443 55667777778888766655432 2222 233 3344 7899999999999999
Q ss_pred HHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHH
Q psy2375 375 AQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCR 454 (929)
Q Consensus 375 a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (929)
+++. ++|++||++|.||+||.+|++++..||++.|++.. .
T Consensus 265 ~kd~-~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~------------~--------------------------- 304 (627)
T COG1154 265 AKDL-KGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPI------------E--------------------------- 304 (627)
T ss_pred HhcC-CCCEEEEEEecCCCCCChhhcChhhccCCCCCCcc------------c---------------------------
Confidence 9997 68999999999999999999999999998655410 0
Q ss_pred HHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccch
Q psy2375 455 KKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFR 534 (929)
Q Consensus 455 ~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~ 534 (929)
.|..+. + .....|++.+|+..|.++++. ++|||+|+|.+...|||.
T Consensus 305 ---tg~~~~-----------------------~-~~~~~sys~vf~~~L~~~a~~---d~~ivaITaAM~~gtGL~---- 350 (627)
T COG1154 305 ---TGQSKK-----------------------S-KPSAPSYTKVFGDTLCELAAK---DEKIVAITAAMPEGTGLV---- 350 (627)
T ss_pred ---cCccCC-----------------------C-CCCCCCHHHHHHHHHHHHHhh---CCCeEEEecCCCCCCChH----
Confidence 000110 0 012347899999999999998 777899999999999987
Q ss_pred hcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHH
Q psy2375 535 QIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWL 614 (929)
Q Consensus 535 ~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~ 614 (929)
.|.+.||+||||+|||||++|++ ||| ||..| ++||+++||+| +||++||++.
T Consensus 351 ---------------------~F~~~fP~R~fDVGIAEQHAVT~--AAG--lA~~G--~kPvvaIYSTF-LQRAYDQliH 402 (627)
T COG1154 351 ---------------------KFSKKFPDRFFDVGIAEQHAVTF--AAG--LAAEG--MKPVVAIYSTF-LQRAYDQLIH 402 (627)
T ss_pred ---------------------HHHHhCchhheehhhhHHHHHHH--HHH--HHhCC--CCCEEEEecHH-HHHHHHHHHH
Confidence 36678999999999999999998 665 88898 99999999999 8999999987
Q ss_pred hhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCC
Q psy2375 615 AGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNE 694 (929)
Q Consensus 615 ~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e 694 (929)
+.+.+..+|+++---.| .+|.||+|||+..|++++|+||||++++|+|..|+..++.+|+...++| +.+|++|.+-
T Consensus 403 DvaiqnLPV~faIDRAG-ivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP---~AiRyPrg~~ 478 (627)
T COG1154 403 DVAIQNLPVTFAIDRAG-IVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP---VAIRYPRGNG 478 (627)
T ss_pred HHHhccCCeEEEEecCc-ccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC---eEEEecCCCC
Confidence 66555555655332222 3699999999999999999999999999999999999999999984344 8899999863
Q ss_pred CCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhh
Q psy2375 695 NYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETE 773 (929)
Q Consensus 695 ~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~ 773 (929)
.. .+..++ .+.+.-|.+.+... |.||.|++.|+++..|+ ||+.|.+. ||+++|||++++||||++
T Consensus 479 ~~-~~~~~~--~~~~~~Gk~~i~~~-----G~~vail~~G~~~~~al~vae~L~~~-Gi~~TVvd~rfvkPlD~~----- 544 (627)
T COG1154 479 VG-VILTPE--LEPLEIGKGELLKE-----GEKVAILAFGTMLPEALKVAEKLNAY-GISVTVVDPRFVKPLDEA----- 544 (627)
T ss_pred CC-CCcccc--cccccccceEEEec-----CCcEEEEecchhhHHHHHHHHHHHhc-CCCcEEEcCeecCCCCHH-----
Confidence 21 111111 12233444544332 46999999999999999 99999987 999999999999999875
Q ss_pred hhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-C--CcEEEEec-CcccccCChhhHHhhhcc
Q psy2375 774 RWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-G--RIYKVLGT-DGFGCSDTRKKLRDFFEN 847 (929)
Q Consensus 774 ~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~--~~~~~lG~-d~Fg~sgs~~~L~~~fgl 847 (929)
++.++.+.+ ..+||+||+.. |+++.|.+++.. + .++.++|+ |.|-.+|+++++++.+||
T Consensus 545 --------------ll~~La~~h-~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gL 609 (627)
T COG1154 545 --------------LLLELAKSH-DLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGL 609 (627)
T ss_pred --------------HHHHHHhhc-CeEEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcCC
Confidence 456777787 79999999974 899999999986 4 67889999 899999999999999999
Q ss_pred eeheeccccccCcC
Q psy2375 848 IIHMKKIIKVPNIG 861 (929)
Q Consensus 848 dae~Iv~~al~~LG 861 (929)
|++.|+.+++..+.
T Consensus 610 d~~~i~~~i~~~l~ 623 (627)
T COG1154 610 DAEGIARRILEWLK 623 (627)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999888774
No 14
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.5e-91 Score=830.41 Aligned_cols=613 Identities=18% Similarity=0.202 Sum_probs=480.0
Q ss_pred cccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcE
Q psy2375 56 TAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDL 135 (929)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~ 135 (929)
+|+|++|..|.+.+..+.++|++++ ++||..+++|+.++ |||+|+++|+++|+.+||. +|+.| .|+|
T Consensus 31 ~~~l~~i~~p~dlk~l~~~~l~~la-~~iR~~ii~~~~~~-------~GH~g~~Ls~vel~~aL~~-~~~~p----~Dr~ 97 (677)
T PLN02582 31 TPLLDTINYPIHMKNLSVKELKQLA-DELRSDVIFNVSKT-------GGHLGSSLGVVELTVALHY-VFNAP----QDKI 97 (677)
T ss_pred CchhhhCCCHHHHhhCCHHHHHHHH-HHHHHHHHHHHHhc-------CCCcCccccHHHHHHHHHH-hhCCC----CCeE
Confidence 6789999999999999999999988 57999999999865 6999999999999999985 68866 5999
Q ss_pred EEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc
Q psy2375 136 IYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI 215 (929)
Q Consensus 136 i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~ 215 (929)
|||+||++ |+++.++||. ++|++|||. +||++||+|.++| ++.|+|||+|+|++.|+|+|.+.|+
T Consensus 98 i~s~GH~a---y~~~~l~gr~--~~l~~~r~~---g~l~g~p~~~e~~-~~~~~~G~~g~~ls~a~G~A~a~~~------ 162 (677)
T PLN02582 98 LWDVGHQS---YPHKILTGRR--DKMHTMRQT---NGLSGFTKRAESE-YDCFGTGHSSTTISAGLGMAVGRDL------ 162 (677)
T ss_pred EEECcchH---HHHHHHHccH--HHhcccccC---CCcCCCCCCCCCC-CceeccchhhhhHHHHHHHHHHHHh------
Confidence 99999999 9999999994 789999997 5699999999988 4899999999999999999987764
Q ss_pred cCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCC-cc--------cccccccccchHHHHHHHhhCC-
Q psy2375 216 TNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQ-RL--------DGPVRGNSKIIQELEAHFYGVG- 285 (929)
Q Consensus 216 ~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~-~i--------dg~v~~~~~~~~~l~~~f~~~G- 285 (929)
++.+++|||++||||++||++|||+|+|+.+++ |||+|||+|+| || +.+|++.. ..|.+ ++.-+
T Consensus 163 -~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~-~li~iv~~N~~~s~~~~~~~s~~~~vg~~~---~~l~~-l~~~~~ 236 (677)
T PLN02582 163 -KGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPAPPVGALS---SALSR-LQSSRP 236 (677)
T ss_pred -cCCCCEEEEEecccccchhhHHHHHHHHHhhCc-CEEEEEECCCCccccccccCCCCCCccHHH---HHHHH-Hhcchh
Confidence 346789999999999999999999999999996 79999999999 33 55555432 22221 11111
Q ss_pred ceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccC-CCCCCc
Q psy2375 286 WNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-TFGGHD 364 (929)
Q Consensus 286 w~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l-~~dGhD 364 (929)
++-++ ..-+.++.+-. +.+.....++.++.+..+... +..++| .|+ +.|+ ++||||
T Consensus 237 ~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~-~~~~fe--------------~~G---~~y~g~iDGHd 293 (677)
T PLN02582 237 LRELR----EVAKGVTKQIG-GPMHELAAKVDEYARGMISGS-GSTLFE--------------ELG---LYYIGPVDGHN 293 (677)
T ss_pred HHHHH----HHHHHHHHhCc-HhHHHHHHHHHHHhhhccCcc-ccchHH--------------HcC---CeEEeeeCCCC
Confidence 11000 00111111100 111222233333333322210 101111 222 3345 779999
Q ss_pred HHHHHHHHHHHHhCC-CCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q psy2375 365 LRKIYSAFKMAQKNK-DKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKN 443 (929)
Q Consensus 365 ~~~v~~a~~~a~~~~-~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~ 443 (929)
+++|.+||++|++.+ ++|+|||++|+||+|+++++++...||+..+++.+. |-
T Consensus 294 ~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~~~~--------g~------------------ 347 (677)
T PLN02582 294 IDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPAT--------GK------------------ 347 (677)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCCccc--------CC------------------
Confidence 999999999999864 799999999999999999877777899876554221 00
Q ss_pred cHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCC
Q psy2375 444 SPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDE 523 (929)
Q Consensus 444 ~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~ 523 (929)
..+. .....+++++|+++|.+++++ +++||++++|+
T Consensus 348 ----------------~~~~-------------------------~~~~~~~s~a~~~aL~~~a~~---d~~vv~ita~m 383 (677)
T PLN02582 348 ----------------QFKV-------------------------KAKTQSYTTYFAEALIAEAEV---DKDVVAIHAAM 383 (677)
T ss_pred ----------------ccCC-------------------------CCCCcCHHHHHHHHHHHHHcc---CCCEEEEeCCC
Confidence 0000 001236788999999999987 66689999999
Q ss_pred CCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhh
Q psy2375 524 SRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMF 603 (929)
Q Consensus 524 ~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F 603 (929)
..++|+. .|++.||+||||+||+||+|+++ |+| ||+.| ++||+.+|++|
T Consensus 384 ~g~~gl~-------------------------~f~~~fP~R~fdvGIAEq~~vg~--AaG--LA~~G--~kPvv~~fs~F 432 (677)
T PLN02582 384 GGGTGLN-------------------------LFARRFPTRCFDVGIAEQHAVTF--AAG--LACEG--LKPFCAIYSSF 432 (677)
T ss_pred CCccchH-------------------------HHHHHcCccccccCcCHHHHHHH--HHH--HHHCC--CeEEEEecHHH
Confidence 8888875 35678999999999999999987 554 88888 99999999999
Q ss_pred HHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCc
Q psy2375 604 GLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQE 683 (929)
Q Consensus 604 ~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~ 683 (929)
+||++||++..++++..+|+++++++|+ .++||+|||+.+|++++|++||++|++|+|++|++.++++++.... .
T Consensus 433 -l~RA~DQI~~dval~~lpVv~v~~~aG~-vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~---g 507 (677)
T PLN02582 433 -LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDD---R 507 (677)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEEECCCc-ccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC---C
Confidence 5899999988777777789999998877 5689999999999999999999999999999999999999997522 3
Q ss_pred eEEEEEecCCCCCCCCCCCc---ccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEc
Q psy2375 684 DVFYYITVMNENYSHPGLKK---GQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSA 759 (929)
Q Consensus 684 ~v~~rl~~~~e~~~~p~~~~---~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv 759 (929)
|+|+|++|.+... ...+. .....+.++ +++++| .|++||++|++|++|+ ||+.|+++ ||+++|||+
T Consensus 508 Pv~IR~pr~~~~~--~~~~~~~~~~~~~iGk~-~vlr~G------~dvtIva~G~~v~~Al~Aa~~L~~~-GI~~~VId~ 577 (677)
T PLN02582 508 PSCFRYPRGNGIG--VQLPPNNKGIPIEVGKG-RILLEG------ERVALLGYGTAVQSCLAAASLLERH-GLSATVADA 577 (677)
T ss_pred CEEEEEecCCCCC--cccCCcccccccccCce-EEEEeC------CCEEEEeecHHHHHHHHHHHHHHhc-CCCEEEEEc
Confidence 4999999875211 11121 111234443 667764 5999999999999999 99999988 999999999
Q ss_pred ccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc-hhHHHHHhhccC-C-----CcEEEEec-Cc
Q psy2375 760 TSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR-LFAEQVRAFIPK-G-----RIYKVLGT-DG 831 (929)
Q Consensus 760 ~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~-~~~~~i~~~l~~-~-----~~~~~lG~-d~ 831 (929)
+|++|||++ ++.++++.+ +.+|++|||.. |+++.|.+++.+ + .++.++|+ |.
T Consensus 578 ~~lkPlD~~-------------------~i~~~~k~~-~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~ 637 (677)
T PLN02582 578 RFCKPLDRA-------------------LIRSLAKSH-EVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDR 637 (677)
T ss_pred CcCCCCCHH-------------------HHHHHhhhC-CEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCc
Confidence 999999875 446777776 68999999976 799999888764 2 36788999 89
Q ss_pred ccccCChhhHHhhhcceeheeccccccCcC
Q psy2375 832 FGCSDTRKKLRDFFENIIHMKKIIKVPNIG 861 (929)
Q Consensus 832 Fg~sgs~~~L~~~fgldae~Iv~~al~~LG 861 (929)
|+.+|++++|+++||||++.|+++++..+.
T Consensus 638 F~~~G~~~~L~~~~GL~~e~I~~~i~~~l~ 667 (677)
T PLN02582 638 YIDHGAPADQLAEAGLTPSHIAATVLNVLG 667 (677)
T ss_pred ccCcCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999887773
No 15
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=6.1e-90 Score=828.24 Aligned_cols=611 Identities=24% Similarity=0.293 Sum_probs=497.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHH
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPG 145 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~ 145 (929)
+.+.++|++++ +.||+++++|+.+++ +||+|+++|+++++.+||.++|+ .|+|+++|+||+|+||++|+
T Consensus 2 ~~~~~~l~~~a-~~iR~~~~~~~~~~~------~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~ 74 (624)
T PRK05899 2 MMDMELLQLLA-NAIRVLSIDAVQKAN------SGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSML 74 (624)
T ss_pred cchHHHHHHHH-HHHHHHHHHHHHHcC------CCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHH
Confidence 34678898887 579999999999988 79999999999999999987766 35667899999999999999
Q ss_pred HHHHHHHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcccc----CCCC
Q psy2375 146 VYARAFLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKIT----NTIN 220 (929)
Q Consensus 146 ~Ya~~~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~----~~~~ 220 (929)
+||+++++|+ +++++|.+||+. ++.+++||.|..+| ++.+++||||+|++.|+|+|++.++...+ +. +..+
T Consensus 75 ~Ya~l~~~G~~~~~~~l~~~~~~--~~~~~~~p~~~~~~-~~~~~~G~lG~gl~~AiG~Ala~~~~~~~-~~~~~~~~~~ 150 (624)
T PRK05899 75 LYSLLHLAGYDLSIDDLKNFRQL--GSKTPGHPEYGHTP-GVETTTGPLGQGLANAVGMALAEKYLAAL-FNRPGLDIVD 150 (624)
T ss_pred HHHHHHHcCCCCCHHHHHHhcCC--CCCCCCCCCCCCCC-CeeeCCcchhhhHHHHHHHHHHHHHhhhh-cCCccccCcC
Confidence 9999999999 999999999997 44479999987777 57899999999999999999998875432 11 1227
Q ss_pred cEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhh
Q psy2375 221 RKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKL 300 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l 300 (929)
++|||++|||++++|.+|||++.|++++|+|+++|+|+|.+++++++... ...++..+|+++||++++|
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~--~~~~~~~~~~a~G~~~~~V--------- 219 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW--FTEDVKKRFEAYGWHVIEV--------- 219 (624)
T ss_pred CeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc--ccccHHHHhccCCCeEEEE---------
Confidence 89999999999999999999999999999999999999999999998752 4578999999999999998
Q ss_pred hhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCC
Q psy2375 301 LKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKD 380 (929)
Q Consensus 301 ~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~ 380 (929)
||||+++|++|+++|++. +
T Consensus 220 ------------------------------------------------------------dG~d~~~l~~al~~a~~~-~ 238 (624)
T PRK05899 220 ------------------------------------------------------------DGHDVEAIDAAIEEAKAS-T 238 (624)
T ss_pred ------------------------------------------------------------CCCCHHHHHHHHHHHHhc-C
Confidence 899999999999999876 6
Q ss_pred CCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCC
Q psy2375 381 KPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGY 460 (929)
Q Consensus 381 ~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~ 460 (929)
+|++|+++|+||+|++. .|+.+.+|+. ++++++++.++++++++. .||..+.+. .+...+ ..
T Consensus 239 ~P~vI~v~t~kg~g~~~-~e~~~~~H~~-~~~~~~~~~~~~~l~~~~-------~~~~~~~~~---~~~~~~---~~--- 300 (624)
T PRK05899 239 KPTLIIAKTIIGKGAPN-KEGTHKVHGA-PLGAEEIAAAKKELGWDY-------EPFEVPEEV---YAHWRK---AK--- 300 (624)
T ss_pred CCEEEEEEeEeccCCcc-ccCCCcccCC-CCCHHHHHHHHHHcCCCc-------ccccCChHH---HHHHHH---hh---
Confidence 89999999999999987 6788889986 788899999888765421 244443221 111111 11
Q ss_pred CCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhccccc
Q psy2375 461 LPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFS 540 (929)
Q Consensus 461 ~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~ 540 (929)
++.. . .. ..|...+. ++++++|++|+++|.++++. +++|+++++|++.++++.. |. ..
T Consensus 301 --~~~~--~---~~---~~~~~~~~----~~~~~~~~a~~~~l~~l~~~---~~~v~vl~~D~~~~~~~~~-~~-~~--- 358 (624)
T PRK05899 301 --ERGA--K---AE---AEWNEKFA----GEKVATRKASGKALNALAKA---LPELVGGSADLAGSNNTKI-KG-SK--- 358 (624)
T ss_pred --hcCc--h---hH---HHHHHhhc----ccchHHHHHHHHHHHHHHhh---CCCEEEEeCCCccccCccc-cc-cc---
Confidence 1100 0 00 12222221 24679999999999999987 5567999999988766652 11 01
Q ss_pred ccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcC
Q psy2375 541 QVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRA 620 (929)
Q Consensus 541 ~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~ 620 (929)
.|. ++.+|+|+||+||+|++|+++ |+ |||++| +++||+.+|++|. +|+++|++.. +++.
T Consensus 359 ----~f~----------~~~~p~R~~d~GIaE~~~vg~--A~--GlA~~G-~~~pv~~t~~~F~-~r~~~qir~~-~~~~ 417 (624)
T PRK05899 359 ----DFA----------PEDYSGRYIHYGVREFAMAAI--AN--GLALHG-GFIPFGGTFLVFS-DYARNAIRLA-ALMK 417 (624)
T ss_pred ----ccC----------ccCCCCCeeeeChhHHHHHHH--HH--HHHHcC-CCeEEEEEcHHHH-HHHHHHHHHH-HhcC
Confidence 121 246899999999999999886 54 488886 4999999999995 9999999876 5667
Q ss_pred CcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCC
Q psy2375 621 RGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPG 700 (929)
Q Consensus 621 ~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~ 700 (929)
.+++++++++|++++++|+|||+++|++++|++|||+|+.|+|++|++.+++++++.+.+ |+|+|+++.+ .|.
T Consensus 418 ~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~---P~~ir~~r~~----~~~ 490 (624)
T PRK05899 418 LPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDG---PSALVLTRQN----LPV 490 (624)
T ss_pred CCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCC---CEEEEEeCCC----CCC
Confidence 789999999999999999999999999999999999999999999999999999987433 4999998754 233
Q ss_pred CCcc-cccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhcc
Q psy2375 701 LKKG-QEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNML 778 (929)
Q Consensus 701 ~~~~-~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l 778 (929)
+++. ....+..|.|++++| +|++||++|++|++|+ ||++|+++ ||+++|||++|++|||++.
T Consensus 491 ~~~~~~~~~~~~G~~~l~~G------~dvtiia~G~~v~~al~Aa~~L~~~-gi~~~VId~~sikPlD~~e--------- 554 (624)
T PRK05899 491 LERTAQEEGVAKGGYVLRDD------PDVILIATGSEVHLALEAADELEAE-GIKVRVVSMPSTELFDEQD--------- 554 (624)
T ss_pred cCCccccccccCCcEEEecC------CCEEEEEeCHHHHHHHHHHHHHHhc-CCcEEEEECCCcchhccCc---------
Confidence 3322 123456677999874 6999999999999999 99999887 9999999999999998862
Q ss_pred CCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheecccccc
Q psy2375 779 HPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVP 858 (929)
Q Consensus 779 ~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~ 858 (929)
+.|+...+.....++|+.|+... ..+..|++ .+++++|++.||.||++++|+++||||+++|+++++.
T Consensus 555 -------~h~~~~~lg~~~~~~v~~e~~~~---~g~~~~~~--~~~~~iGv~~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 622 (624)
T PRK05899 555 -------AAYKESVLPAAVTARVAVEAGVA---DGWYKYVG--LDGKVLGIDTFGASAPADELFKEFGFTVENIVAAAKE 622 (624)
T ss_pred -------HHHHhccccccccceEEEccCCc---cchhhhcC--CCceEEECCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 35667777444368899987643 33467777 5778999955999999999999999999999988765
Q ss_pred C
Q psy2375 859 N 859 (929)
Q Consensus 859 ~ 859 (929)
.
T Consensus 623 ~ 623 (624)
T PRK05899 623 L 623 (624)
T ss_pred h
Confidence 4
No 16
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6e-91 Score=821.29 Aligned_cols=591 Identities=14% Similarity=0.124 Sum_probs=476.2
Q ss_pred CcccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCC
Q psy2375 55 NTAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALV-IRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGG 133 (929)
Q Consensus 55 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v-~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~d 133 (929)
.||+|++|+.|.+.+..+.+||+++| ++||..++..| ++. |||+||++|++||+.+|| ++|+.| .|
T Consensus 75 ~~~~L~~i~~P~dlk~L~~~eL~~La-~EiR~~li~~v~s~~-------GGHl~snLGvVELTvALH-~VFd~p----~D 141 (701)
T PLN02225 75 ETPILDSIETPLQLKNLSVKELKLLA-DEIRTELHSVLWKKT-------QKSMNPSFAAIELTLALH-YVFRAP----VD 141 (701)
T ss_pred CCchhhhcCCHHHHhhCCHHHHHHHH-HHHHHHHHHHhhccc-------CCCcCCCccHHHHHHHHH-HHhCCC----CC
Confidence 48899999999999999999999999 58999999999 564 899999999999999995 579987 79
Q ss_pred cEEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhc
Q psy2375 134 DLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHAR 213 (929)
Q Consensus 134 d~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r 213 (929)
++||++|||| |+|++||||. +++.+ ||. +||||||.|.|++ |+.|.+||.|+++|.|+|+|.|+++
T Consensus 142 kiiwDvgHQ~---Y~HKiLTGR~--~~f~~-Rq~---~GlsGf~~r~ES~-~D~f~~GHssTSiSaalG~a~ardl---- 207 (701)
T PLN02225 142 NILWDAVEQT---YAHKVLTRRW--SAIPS-RQK---NGISGVTSQLESE-YDSFGTGHGCNSISAGLGLAVARDI---- 207 (701)
T ss_pred ceeecccccc---chhhHhcCCh--hhcCc-ccc---CCcCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHh----
Confidence 9999999999 9999999996 67887 998 9999999999987 8999999999999999999988875
Q ss_pred cccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc--------ccccccchHHH-----HHH
Q psy2375 214 KITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP--------VRGNSKIIQEL-----EAH 280 (929)
Q Consensus 214 ~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~--------v~~~~~~~~~l-----~~~ 280 (929)
.+.+++|+++||||+|+.|++|||||+|+..+ .|||+|+|||.|+|+.+ |++..+....+ +..
T Consensus 208 ---~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~-~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~ 283 (701)
T PLN02225 208 ---KGKRDRVVAVIDNATITAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRK 283 (701)
T ss_pred ---cCCCCcEEEEEcCcchhhhhHHHHHhhhhccC-CCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHH
Confidence 34678999999999999999999999999987 68999999999999999 88754433322 222
Q ss_pred HhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccC-C
Q psy2375 281 FYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-T 359 (929)
Q Consensus 281 f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l-~ 359 (929)
++.....+ +.+-. +.+.+.+.++.++.+..+... |.-++| +|+ +.|+ |
T Consensus 284 ~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~k~~~~~~-~~~lFe--------------~lG---~~Y~Gp 332 (701)
T PLN02225 284 FRELAKAM------------TKRIG-KGMYEWAAKVDEYARGMVGPT-GSTLFE--------------ELG---LYYIGP 332 (701)
T ss_pred HHHHHHHH------------HHhCC-HHHHHHHHHHHHHhhhccCCC-ccCcHH--------------HcC---CeEECc
Confidence 33222222 22111 123333445555444443221 211222 233 4455 7
Q ss_pred CCCCcHHHHHHHHHHHHhCC-CCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCC
Q psy2375 360 FGGHDLRKIYSAFKMAQKNK-DKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFY 438 (929)
Q Consensus 360 ~dGhD~~~v~~a~~~a~~~~-~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~ 438 (929)
+||||+++|..+|+++++.. .+|+|||++|.||+... .|.+
T Consensus 333 vDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~~--------------------------tg~~------------ 374 (701)
T PLN02225 333 VDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDAE--------------------------TGKN------------ 374 (701)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCCC--------------------------CCCc------------
Confidence 89999999999999999873 48999999999997100 0000
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceee
Q psy2375 439 KPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVP 518 (929)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~ 518 (929)
. . .....+++++|+++|.+++++ +++||+
T Consensus 375 ------------------------~-----~-------------------~~~~~s~~~~f~~aL~~la~~---D~~Iv~ 403 (701)
T PLN02225 375 ------------------------I-----M-------------------VKDRRTYSDCFVEALVMEAEK---DRDIVV 403 (701)
T ss_pred ------------------------C-----C-------------------CCCCcCHHHHHHHHHHHHHhh---CCCEEE
Confidence 0 0 001347899999999999988 667899
Q ss_pred eecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEE
Q psy2375 519 ILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT 598 (929)
Q Consensus 519 i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~ 598 (929)
+++|+..++++. .|++.||+||||+|||||+|+++ ||| ||..| ++||+.
T Consensus 404 Itadm~~gtgl~-------------------------~f~~~fPdRffDvGIAEQhaVt~--AAG--LA~~G--~kPvv~ 452 (701)
T PLN02225 404 VHAGMEMDASLI-------------------------TFQERFPDRFFNVGMAEQHAVTF--SAG--LSSGG--LKPFCI 452 (701)
T ss_pred EeCCccCcccHH-------------------------HHHHHccccccccCccHHHHHHH--HHH--HHHCC--CEEEEE
Confidence 999998766665 36688999999999999999987 555 88888 999999
Q ss_pred eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc
Q psy2375 599 FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM 678 (929)
Q Consensus 599 ~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~ 678 (929)
+||+| +||++||++..++++..+|.++++++|+ .+.||+|||+.+|+++||+||||+|++|+|+.|+..++++++...
T Consensus 453 iystF-lqRAyDQI~~Dval~~lpV~~vid~aGl-vg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~ 530 (701)
T PLN02225 453 IPSAF-LQRAYDQVVHDVDRQRKAVRFVITSAGL-VGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVT 530 (701)
T ss_pred eehhH-HHHHHHHHHHHHHhhcCCceEEEECCcc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcC
Confidence 99999 6899999998877777788888888876 468999999999999999999999999999999999999988542
Q ss_pred cCCCceEEEEEecCCCCCCCCC-CCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEE
Q psy2375 679 ISNQEDVFYYITVMNENYSHPG-LKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAV 756 (929)
Q Consensus 679 ~g~~~~v~~rl~~~~e~~~~p~-~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~V 756 (929)
. .|+|||++|.+... .+. .+.+....+.+ ..++++| .||+||++|+++++|+ ||++|+++ ||+++|
T Consensus 531 ~---gPv~IR~pRg~~~~-~~~~~~~~~~~~iGK-~~vlreG------~dvtIia~G~mv~~Al~AA~~L~~~-GI~vtV 598 (701)
T PLN02225 531 D---RPVCFRFPRGSIVN-MNYLVPTGLPIEIGR-GRVLVEG------QDVALLGYGAMVQNCLHAHSLLSKL-GLNVTV 598 (701)
T ss_pred C---CCEEEEecccccCC-CCcCCCCCccccCcc-eEEEEeC------CCEEEEeccHHHHHHHHHHHHHHhc-CCCEEE
Confidence 2 24999999874221 111 12222223444 4566664 6999999999999999 99999988 999999
Q ss_pred EEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc-hhHHHHHhhccCC------CcEEEEec
Q psy2375 757 WSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR-LFAEQVRAFIPKG------RIYKVLGT 829 (929)
Q Consensus 757 vsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~-~~~~~i~~~l~~~------~~~~~lG~ 829 (929)
||++++||||++.+ .++++++ +.|||+|||.. |+++.|.+++.+. .++.++|+
T Consensus 599 Idlr~ikPLD~e~I-------------------~~~~~k~-~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGi 658 (701)
T PLN02225 599 ADARFCKPLDIKLV-------------------RDLCQNH-KFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVL 658 (701)
T ss_pred EecCCCCCCCHHHH-------------------HHHHhhc-CeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEec
Confidence 99999999998653 5666677 79999999976 7999999998652 36789999
Q ss_pred -CcccccCChhhHHhhhcceeheeccccccCcC
Q psy2375 830 -DGFGCSDTRKKLRDFFENIIHMKKIIKVPNIG 861 (929)
Q Consensus 830 -d~Fg~sgs~~~L~~~fgldae~Iv~~al~~LG 861 (929)
|.|+.+|++++|++.+|||+++|+++++..++
T Consensus 659 pd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~ 691 (701)
T PLN02225 659 PDGYIEEASPREQLALAGLTGHHIAATALSLLG 691 (701)
T ss_pred CCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 89999999999999999999999999887774
No 17
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=9.8e-90 Score=820.83 Aligned_cols=567 Identities=21% Similarity=0.235 Sum_probs=465.9
Q ss_pred ccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEe
Q psy2375 59 INTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYI 138 (929)
Q Consensus 59 ~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~ 138 (929)
++.|+.|.+.+..+.++|++++ ++||..+++|+. ++ |||+|+++|+++|+.+||. +|+. ++|+||||
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la-~~iR~~~i~~~~-~~------~GH~g~~ls~vel~~aL~~-~~~~----~rDr~i~s 67 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLC-DELRRYLLESVS-AS------GGHLASGLGTVELTVALHY-VFNT----PKDQFIWD 67 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHH-HHHHHHHHHHHh-cc------CCCcCcchhHHHHHHHHHh-hCCC----CCCcEEEe
Confidence 4678889999999999999998 579999999997 46 8999999999999999986 5764 48999999
Q ss_pred CCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCC
Q psy2375 139 QGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT 218 (929)
Q Consensus 139 ~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~ 218 (929)
+||++ |++++++||. ++|.+||+. +++++||.|.+ |+++.|++||+|+|++.|+|+|++.|+ ++
T Consensus 68 ~GH~~---Y~~~~~~G~~--~~l~~~r~~---g~l~g~p~~~e-~~~d~~~~G~~g~~ls~a~G~A~a~~~-------~~ 131 (617)
T TIGR00204 68 VGHQA---YPHKLLTGRR--EKFSTLRQK---KGLHGFPKRSE-SEYDVFSAGHSSTSISAGLGIAVAAEK-------KG 131 (617)
T ss_pred cchHH---HHHHHHhCcH--HHhcchhhc---CCcCCCCcCCC-CCCCccCCCchHhHHHHHHHHHHHHHh-------hC
Confidence 99999 9999999994 889999997 56999999987 667778999999999999999988875 34
Q ss_pred CCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHH----------------------
Q psy2375 219 INRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQE---------------------- 276 (929)
Q Consensus 219 ~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~---------------------- 276 (929)
.+.+|+|++||||++||++|||+|+|+.++||| |+|||+|+++|++|+++..+....
T Consensus 132 ~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~ 210 (617)
T TIGR00204 132 ADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLP 210 (617)
T ss_pred CCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCc
Confidence 578999999999999999999999999999986 999999999999999864321111
Q ss_pred -----HHHH--------------HhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhcc
Q psy2375 277 -----LEAH--------------FYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFF 337 (929)
Q Consensus 277 -----l~~~--------------f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~f 337 (929)
+..+ |+++||+++-
T Consensus 211 ~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~----------------------------------------------- 243 (617)
T TIGR00204 211 PIKNYLAKRTEESMKGLVVPGTFFEELGFNYIG----------------------------------------------- 243 (617)
T ss_pred chhHHHHHHHHHhhhhccCccchHHHcCCcEEc-----------------------------------------------
Confidence 2222 5555555551
Q ss_pred CCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHH
Q psy2375 338 GKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIK 417 (929)
Q Consensus 338 g~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~ 417 (929)
++||||+++|+++|+.|++. ++|++||++|+||+|++++++++..||+..+++.+
T Consensus 244 ---------------------~vDGhd~~~l~~al~~ak~~-~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~--- 298 (617)
T TIGR00204 244 ---------------------PVDGHDLLELIETLKNAKKL-KGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLS--- 298 (617)
T ss_pred ---------------------ccCCCCHHHHHHHHHHHhcC-CCCEEEEEEecCCCCCchhhcChhhccCCCCCChh---
Confidence 34999999999999998876 57999999999999999854445568876322210
Q ss_pred HHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHH
Q psy2375 418 SIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTY 497 (929)
Q Consensus 418 ~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~ 497 (929)
.+ ..|. . +....++++
T Consensus 299 ---------------------------------------~~-~~~~-----------------------~-~~~~~~~~~ 314 (617)
T TIGR00204 299 ---------------------------------------TG-CLPK-----------------------S-KSALPSYSK 314 (617)
T ss_pred ---------------------------------------hC-CcCC-----------------------C-CCCCccHHH
Confidence 00 0000 0 112357899
Q ss_pred HHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHH
Q psy2375 498 AYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMG 577 (929)
Q Consensus 498 af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~ 577 (929)
+|+++|.+++++ +++||++++|+..++++. .|++.||+||||+||+||+|++
T Consensus 315 a~~~~L~~~~~~---d~~iv~i~ad~~~~~~~~-------------------------~f~~~fP~R~~d~GIaEq~~vg 366 (617)
T TIGR00204 315 IFSDTLCELAKK---DNKIVGITPAMPEGSGLD-------------------------KFSRKFPDRYFDVAIAEQHAVT 366 (617)
T ss_pred HHHHHHHHHHhh---CcCEEEEECCccCCcChH-------------------------HHHHHCccccccCCccHHHHHH
Confidence 999999999887 566799999987666654 3567789999999999999988
Q ss_pred HHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcE
Q psy2375 578 SWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCI 657 (929)
Q Consensus 578 ~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~ 657 (929)
+ |+| ||+.| ++||+.+|++| ++|++||+...++++..+|+++++++|+. +++|+|||+.+|++++|++||++
T Consensus 367 ~--AaG--lA~~G--~~Pvv~~~a~F-l~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~lr~iPgl~ 438 (617)
T TIGR00204 367 F--AAG--MAIEG--YKPFVAIYSTF-LQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISYLRCIPNMV 438 (617)
T ss_pred H--HHH--HHHCC--CEEEEEecHHH-HHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHHHhcCCCcE
Confidence 7 555 88887 99999999999 57999999887777778899999998875 89999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccceE-EEeccCCcCCCCcEEEEEeChh
Q psy2375 658 PYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLY-LLKNHNNEKSKLKVQLIGSGAI 736 (929)
Q Consensus 658 v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y-~l~~g~~~~~g~dv~Lia~G~~ 736 (929)
|++|+|+.|++.+++.+++...+ |+|+|+++.+.+. .+ .+.. ...+..|.+ ++++ |.|++||++|.+
T Consensus 439 V~~Psd~~e~~~~l~~a~~~~~~---Pv~ir~~r~~~~~-~~-~~~~-~~~~~~Gk~~vlr~------G~dvtIva~G~~ 506 (617)
T TIGR00204 439 IMAPSDENELRQMLYTGYHYDDG---PIAVRYPRGNAVG-VE-LTPE-PEKLPIGKSEVLRK------GEKILILGFGTL 506 (617)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCC---CEEEEEccCCcCC-cc-cCCc-cccccCCceEEEEc------CCCEEEEEcCHH
Confidence 99999999999999999986323 4999999864211 11 1111 123334544 4444 469999999999
Q ss_pred HHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHH
Q psy2375 737 LREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQ 813 (929)
Q Consensus 737 v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~ 813 (929)
+++|+ ||+.|+++ ||+++|||++|++|||++. +.+.++.+ +.+|++|||.. |+++.
T Consensus 507 v~~al~Aa~~L~~~-gi~~~VId~~~lkPlD~e~-------------------i~~~~~k~-~~vvtvEE~~~~GGlGs~ 565 (617)
T TIGR00204 507 VPEALEVAESLNEK-GIEATVVDARFVKPLDEEL-------------------ILEIAASH-EKLVTVEENAIMGGAGSA 565 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCcCCcCCHHH-------------------HHHHHhhc-CeEEEEECCCCccChHHH
Confidence 99999 99999988 9999999999999998864 35566666 79999999975 89999
Q ss_pred HHhhccCC---CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 814 VRAFIPKG---RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 814 i~~~l~~~---~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
|.+++.+. .++.++|+ |.|+.+|++++|+++||||+++|++++...+
T Consensus 566 v~~~l~~~~~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 566 VLEFLMDQNKLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred HHHHHHhcCCCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 99998652 47899999 8899999999999999999999998877543
No 18
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.1e-88 Score=802.30 Aligned_cols=534 Identities=20% Similarity=0.253 Sum_probs=445.1
Q ss_pred CCcccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCC
Q psy2375 54 KNTAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGG 133 (929)
Q Consensus 54 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~d 133 (929)
..||+|++|..|.+++.++.++|++++ .+||+.++.|+.++ |||+|+++|+++|+.+||. +|+.| +|
T Consensus 62 ~~~~~l~~i~~p~~~k~l~~~~L~~la-~eiR~~ii~~~~~~-------~GHlgssLs~vEl~~aL~~-vf~~p----~D 128 (641)
T PLN02234 62 PPTPLLDTINHPMHMKNLSIKELKVLS-DELRSDVIFNVSKT-------GGHLGSNLGVVELTVALHY-IFNTP----HD 128 (641)
T ss_pred CCCchhhhcCCHHHHhhCCHHHHHHHH-HHHHHHHHHHHhhc-------CCCccccchHHHHHHHHHH-hcCCC----CC
Confidence 459999999999999999999999998 58999999999875 6999999999999999985 68865 69
Q ss_pred cEEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhc
Q psy2375 134 DLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHAR 213 (929)
Q Consensus 134 d~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r 213 (929)
+||||+||++ |+++.++||. ++|.+|||. +||++||.+.++| ++.|+|||+|+|++.|+|+|.++|.
T Consensus 129 riI~s~GHqa---ya~~~ltgr~--~~l~t~r~~---ggl~G~p~~~es~-~d~~~tGslg~glS~a~GmA~a~~l---- 195 (641)
T PLN02234 129 KILWDVGHQS---YPHKILTGRR--GKMKTIRQT---NGLSGYTKRRESE-HDSFGTGHSSTTLSAGLGMAVGRDL---- 195 (641)
T ss_pred eEEEecchhH---HHHHHHHhhh--hhhcccccC---CCcCCCCCCCCCC-CcEECCCchHHHHHHHHHHHHHHHh----
Confidence 9999999999 9999999996 579999997 5699999999888 5899999999999999999977663
Q ss_pred cccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCC------cccccccccccch-------------
Q psy2375 214 KITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQ------RLDGPVRGNSKII------------- 274 (929)
Q Consensus 214 ~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~------~idg~v~~~~~~~------------- 274 (929)
++.+++|||++|||||+||++|||+++|++.+ +|||+|||+|+| ++||++..++...
T Consensus 196 ---~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~ 271 (641)
T PLN02234 196 ---KGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMI 271 (641)
T ss_pred ---CCCCCeEEEEEccchhhhHHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccc
Confidence 45678999999999999999999999999666 999999999999 5888887654332
Q ss_pred -HHHHHHHhhCCceEE-EEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCc
Q psy2375 275 -QELEAHFYGVGWNVI-KVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSD 352 (929)
Q Consensus 275 -~~l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d 352 (929)
..+..+|+++||+++ .|
T Consensus 272 ~~~~~~~fe~fG~~~~g~v------------------------------------------------------------- 290 (641)
T PLN02234 272 RETSSTLFEELGFHYVGPV------------------------------------------------------------- 290 (641)
T ss_pred cCCHHHHHHHcCCEEEeeE-------------------------------------------------------------
Confidence 246789999999999 66
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHhCC-CCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcc
Q psy2375 353 EDIWNLTFGGHDLRKIYSAFKMAQKNK-DKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSE 431 (929)
Q Consensus 353 ~~i~~l~~dGhD~~~v~~a~~~a~~~~-~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~ 431 (929)
||||+++|.+||+++++.+ ++|++||++|+||+|+++++.....||+..+++.+. +.
T Consensus 291 --------DGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~--------g~------ 348 (641)
T PLN02234 291 --------DGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPET--------GK------ 348 (641)
T ss_pred --------CCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccc--------cc------
Confidence 9999999999999988764 589999999999999998544477899875443210 00
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccC
Q psy2375 432 LSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKN 511 (929)
Q Consensus 432 ~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~ 511 (929)
+. . + .....+.+++|+++|.+++++
T Consensus 349 ------------------------------~~-----~-----~-------------~~~~~sy~~af~~aL~e~a~~-- 373 (641)
T PLN02234 349 ------------------------------QF-----K-----N-------------ISKTQSYTSCFVEALIAEAEA-- 373 (641)
T ss_pred ------------------------------cc-----c-----C-------------CCCCCCHHHHHHHHHHHHHHH--
Confidence 00 0 0 011357899999999999887
Q ss_pred CCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCC
Q psy2375 512 IGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNC 591 (929)
Q Consensus 512 i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~ 591 (929)
+++||++++|+..+++++ .|++.||+||||+||+||+|+++ |+| +|+.|
T Consensus 374 -D~~Iv~l~adm~ggt~~~-------------------------~f~~~fPdR~fdvGIAEq~~Vg~--AaG--LA~~G- 422 (641)
T PLN02234 374 -DKDIVAIHAAMGGGTMLN-------------------------LFESRFPTRCFDVGIAEQHAVTF--AAG--LACEG- 422 (641)
T ss_pred -CcCEEEEECCCCCCcchH-------------------------HHHHHccccccCCCcCHHHHHHH--HHH--HHHCC-
Confidence 666799999997766554 46788999999999999999987 554 88888
Q ss_pred CceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHH
Q psy2375 592 IMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIII 671 (929)
Q Consensus 592 ~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l 671 (929)
++||+.+|++| ++|++||++..++++..+|++++++.|+ .+++|+|||+.+|++++|++|||+|++|+|++|++.++
T Consensus 423 -~rPvv~~fs~F-l~RA~DQI~~dva~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l 499 (641)
T PLN02234 423 -LKPFCTIYSSF-MQRAYDQVVHDVDLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMV 499 (641)
T ss_pred -CeEEEEehHHH-HHHHHHHHHHHHhhcCCCEEEEEeCCcc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 99999999999 6899999988877777789888888876 48899999999999999999999999999999999999
Q ss_pred HHHHhhccCCCceEEEEEecCCCC-CCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhcc
Q psy2375 672 HHGLHCMISNQEDVFYYITVMNEN-YSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQE 749 (929)
Q Consensus 672 ~~al~~~~g~~~~v~~rl~~~~e~-~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~ 749 (929)
+.++... +.|+|||++|.+.. ...|.-.......+.++ +++++| .||+||++|++|++|+ ||++|+++
T Consensus 500 ~~a~~~~---~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~-~vlreG------~dvtIva~G~~v~~Al~AA~~L~~~ 569 (641)
T PLN02234 500 ATAAAID---DRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRG-RILRDG------ERVALLGYGSAVQRCLEAASMLSER 569 (641)
T ss_pred HHHHhCC---CCCEEEEeecccccccccCCCCccccccCceE-EEEEeC------CCEEEEEecHHHHHHHHHHHHHHhc
Confidence 9988652 23488999986521 00111001112234443 567764 5999999999999999 99999988
Q ss_pred CCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc-hhHHHHHhhccC
Q psy2375 750 WDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR-LFAEQVRAFIPK 820 (929)
Q Consensus 750 ~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~-~~~~~i~~~l~~ 820 (929)
||+++|||++|++|||.+. +.++.+.+ +.||++|||.. |+++.|.+++.+
T Consensus 570 -GI~v~VId~rsikPlD~~~-------------------i~sl~k~~-~~vVt~Ee~~~GG~Gs~Va~~l~e 620 (641)
T PLN02234 570 -GLKITVADARFCKPLDVAL-------------------IRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAL 620 (641)
T ss_pred -CCCEEEEecCCcCCCCHHH-------------------HHHHHHhC-CEEEEECCCCCCcHHHHHHHHHHH
Confidence 9999999999999998753 46677676 78999999976 799999999875
No 19
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.1e-87 Score=801.53 Aligned_cols=571 Identities=18% Similarity=0.224 Sum_probs=467.6
Q ss_pred CcccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCc
Q psy2375 55 NTAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGD 134 (929)
Q Consensus 55 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd 134 (929)
..++|++|+.+++.+..+.++|++++ ++||.++++|+.++ |||+|+++|+++|+.+|| ++|+.| +|+
T Consensus 5 ~~~~l~~i~~p~dl~~l~~~~l~~~a-~~iR~~ii~~~~~~-------~GH~g~~ls~vel~~aL~-~~~~~p----rDr 71 (641)
T PRK12571 5 KTPLLDRIKGPADLRALSDAELEQLA-DELRAEVISAVSET-------GGHLGSSLGVVELTVALH-AVFNTP----KDK 71 (641)
T ss_pred CCChhhhcCCHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHh-------CCCcCCCchHHHHHHHHH-HhcCCC----CCc
Confidence 46789999999999999999999988 57999999999976 699999999999999998 578754 799
Q ss_pred EEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcc
Q psy2375 135 LIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARK 214 (929)
Q Consensus 135 ~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~ 214 (929)
||||+||++ |++++|+|| +++|++|||. +|+++||.+.++|. +.+..++.|.+++.|+|+|.+.+.
T Consensus 72 ~i~s~GH~~---Y~~~~l~g~--~~~l~~~r~~---~~l~g~p~~~e~~~-~~~~~g~~~gslg~a~G~A~a~~~----- 137 (641)
T PRK12571 72 LVWDVGHQC---YPHKILTGR--RDRFRTLRQK---GGLSGFTKRSESEY-DPFGAAHSSTSISAALGFAKARAL----- 137 (641)
T ss_pred EEEECchHH---HHHHHHhCC--HHHHhhhhhC---CCcCCCCCCCcCCC-CCcccCCCcChHHHHHHHHHHHHH-----
Confidence 999999999 999999998 6899999997 66999999888774 457777778888899999977764
Q ss_pred ccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHH------------------
Q psy2375 215 ITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQE------------------ 276 (929)
Q Consensus 215 ~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~------------------ 276 (929)
...+++|||++||||++||.+|||+++|+++++ ||++|+|+|++++++||++..+..++
T Consensus 138 --~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~-~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (641)
T PRK12571 138 --GQPDGDVVAVIGDGSLTAGMAYEALNNAGAADR-RLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVE 214 (641)
T ss_pred --hCCCCeEEEEEeCchhhcchHHHHHHHHHHhCC-CEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 235789999999999999999999999999997 79999999999999999854322111
Q ss_pred -----------------------HHHHHhhCCceEE-EEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhh
Q psy2375 277 -----------------------LEAHFYGVGWNVI-KVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFI 332 (929)
Q Consensus 277 -----------------------l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~ 332 (929)
...+|+++||+++ .|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~v----------------------------------------- 253 (641)
T PRK12571 215 ERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPI----------------------------------------- 253 (641)
T ss_pred hhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECcc-----------------------------------------
Confidence 0367888888888 45
Q ss_pred HhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCC
Q psy2375 333 RKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKID 412 (929)
Q Consensus 333 r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~ 412 (929)
||||+++|.+||++|++..++|++||++|+||+|+++++++...||+..+++
T Consensus 254 ----------------------------dGhd~~~l~~al~~ak~~~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~ 305 (641)
T PRK12571 254 ----------------------------DGHDMEALLSVLRAARARADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFD 305 (641)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHhCCCCCEEEEEEecCccCcchhhcCCCcccCCCCcC
Confidence 9999999999999998755899999999999999998555567899974322
Q ss_pred HHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCc
Q psy2375 413 HQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERK 492 (929)
Q Consensus 413 ~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~ 492 (929)
.+ ... +. . + ....
T Consensus 306 ~~--------------------------~~~------------------~~-----~-----~-------------~~~~ 318 (641)
T PRK12571 306 VV--------------------------TGL------------------QK-----K-----S-------------APSA 318 (641)
T ss_pred CC--------------------------CCc------------------cc-----C-----C-------------Cccc
Confidence 10 000 00 0 0 0012
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccc
Q psy2375 493 ISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINE 572 (929)
Q Consensus 493 ~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE 572 (929)
.+++++|+++|.++++. +++|+++++|++.++++. .|++.||+||||+||+|
T Consensus 319 ~~~~~~f~~~L~~la~~---d~~iv~isadl~~~~~~~-------------------------~f~~~~p~R~id~GIaE 370 (641)
T PRK12571 319 PSYTSVFGEELTKEAAE---DSDIVAITAAMPLGTGLD-------------------------KLQKRFPNRVFDVGIAE 370 (641)
T ss_pred hhHHHHHHHHHHHHHhh---CCCEEEEeCCccCCCChH-------------------------HHHHhCCCcccccCccH
Confidence 36789999999999887 555799999998766654 35677899999999999
Q ss_pred hhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhc
Q psy2375 573 AGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLAST 652 (929)
Q Consensus 573 ~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~ 652 (929)
|+|+++ |+| +|+.| ++||+.+|++| ++|++||++..++++..+++++++++|+. ++||+|||+.+|++++|+
T Consensus 371 ~~mvg~--AaG--lA~~G--~~P~v~~f~~F-l~ra~dQI~~~~a~~~lpv~~v~~~~G~~-g~dG~THq~~~dia~lr~ 442 (641)
T PRK12571 371 QHAVTF--AAG--LAAAG--LKPFCAVYSTF-LQRGYDQLLHDVALQNLPVRFVLDRAGLV-GADGATHAGAFDLAFLTN 442 (641)
T ss_pred HHHHHH--HHH--HHHCC--CEEEEEehHHH-HHHHHHHHHHHHhhcCCCeEEEEECCCcC-CCCCccccccHHHHHHhc
Confidence 998886 554 77777 99999999999 57999999876666666788888888874 899999999999999999
Q ss_pred CCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcc-cccccccceEEEeccCCcCCCCcEEEE
Q psy2375 653 IPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKG-QEKGIIKGLYLLKNHNNEKSKLKVQLI 731 (929)
Q Consensus 653 iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~-~~~~i~~G~y~l~~g~~~~~g~dv~Li 731 (929)
|||++|++|+|++|++.+++.+++... .|+|+|++|.+.+ ...++.. ....+.++. +++++ +|++||
T Consensus 443 iPnl~V~~Psd~~e~~~~l~~a~~~~~---~P~~ir~~r~~~~--~~~~~~~~~~~~~gk~~-vlr~G------~ditIv 510 (641)
T PRK12571 443 LPNMTVMAPRDEAELRHMLRTAAAHDD---GPIAVRFPRGEGV--GVEIPAEGTILGIGKGR-VPREG------PDVAIL 510 (641)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhCCC---CcEEEEEecCcCC--ccccCCCCccccCceeE-EEecC------CCEEEE
Confidence 999999999999999999999998422 3499999986421 1112221 223455554 56663 699999
Q ss_pred EeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--
Q psy2375 732 GSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR-- 808 (929)
Q Consensus 732 a~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~-- 808 (929)
++|+++++|+ ||+.|+++ ||+++|||+++++|||.+ ++.++++.+ .+|+++|+..
T Consensus 511 a~G~~v~~aleAa~~L~~~-Gi~v~VId~~~lkPlD~~-------------------~i~sv~k~~--~vvvveE~~~~g 568 (641)
T PRK12571 511 SVGAHLHECLDAADLLEAE-GISVTVADPRFVKPLDEA-------------------LTDLLVRHH--IVVIVEEQGAMG 568 (641)
T ss_pred EecHHHHHHHHHHHHHHhc-CCCEEEEEcCcCCCcCHH-------------------HHHHHhhhC--CEEEEECCCCCC
Confidence 9999999999 99999988 999999999999999874 456776654 4666777644
Q ss_pred hhHHHHHhhccC-C-----CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCcC
Q psy2375 809 LFAEQVRAFIPK-G-----RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNIG 861 (929)
Q Consensus 809 ~~~~~i~~~l~~-~-----~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~LG 861 (929)
|+++.|.+++.+ + .++.++|+ |.|+.++++++|+++||+|++.|++++...++
T Consensus 569 G~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l~ 628 (641)
T PRK12571 569 GFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGALA 628 (641)
T ss_pred CHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 788888887754 1 36789999 89999999999999999999999999988774
No 20
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=9.4e-85 Score=776.84 Aligned_cols=567 Identities=20% Similarity=0.217 Sum_probs=470.7
Q ss_pred CcccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCc
Q psy2375 55 NTAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGD 134 (929)
Q Consensus 55 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd 134 (929)
+-|+||+|+.+.+.+..+.++|++++ +.||.++++|+.+ + +||+|+++|+++++.+||. .|+. ++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~a-~~iR~~~~~~~~~-~------~gH~g~~ls~~~i~~~L~~-~~~~----~rDr 69 (580)
T PRK05444 3 KYPLLDTINSPADLKKLSEEELPQLA-DEIREFLIDVVSK-T------GGHLGSNLGVVELTVALHY-VFDT----PKDR 69 (580)
T ss_pred CCchhhccCCHHHHhcCCHHHHHHHH-HHHHHHHHHHHHh-c------CCCcCCCccHHHHHHHHHH-hcCC----CCcc
Confidence 56889999999999999999999987 5799999999976 5 7999999999999999985 5663 4899
Q ss_pred EEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcc
Q psy2375 135 LIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARK 214 (929)
Q Consensus 135 ~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~ 214 (929)
||||+||++ |++++++|+ .++|++||+. +++++||.+.++|+ ++++|||+|+|+++|+|+|.+.|+.
T Consensus 70 ~ils~GH~~---y~~~~~~g~--~~~l~~~~~~---~s~~g~p~~~~~~~-~~~~~G~lG~gl~~AvG~A~a~~~~---- 136 (580)
T PRK05444 70 IIWDVGHQA---YPHKILTGR--RDRFDTLRQK---GGLSGFPKRSESEY-DTFGAGHSSTSISAALGMAKARDLK---- 136 (580)
T ss_pred EEEeccHHH---HHHHHHhCc--HHHhcCcccC---CCCCCCCCCCCCCC-eeECCChHHHHHHHHHHHHHHHHhh----
Confidence 999999999 999999998 5889999997 45999999888885 7999999999999999999877752
Q ss_pred ccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccc--hHHHHHHHhhCCceEEEEe
Q psy2375 215 ITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKI--IQELEAHFYGVGWNVIKVI 292 (929)
Q Consensus 215 ~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~--~~~l~~~f~~~Gw~vi~v~ 292 (929)
...+++|||++||||++||++|||++.|++++ +||++|+|+|.+++++++...... ..++.++|+++||+++.++
T Consensus 137 --~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~v 213 (580)
T PRK05444 137 --GGEDRKVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPI 213 (580)
T ss_pred --CCCCCeEEEEEcccccccCHHHHHHHHHHhhC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeee
Confidence 23568999999999999999999999999999 789999999999999999754211 2456789999999999532
Q ss_pred cccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHH
Q psy2375 293 WSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAF 372 (929)
Q Consensus 293 ~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~ 372 (929)
||||+++|++|+
T Consensus 214 --------------------------------------------------------------------dG~d~~~l~~al 225 (580)
T PRK05444 214 --------------------------------------------------------------------DGHDLDALIETL 225 (580)
T ss_pred --------------------------------------------------------------------CCCCHHHHHHHH
Confidence 899999999999
Q ss_pred HHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHH
Q psy2375 373 KMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKN 452 (929)
Q Consensus 373 ~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~ 452 (929)
++|++. ++|++|+++|+||+|+++.++++..||+..+++.+. +.
T Consensus 226 ~~a~~~-~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~--------~~--------------------------- 269 (580)
T PRK05444 226 KNAKDL-KGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPET--------GE--------------------------- 269 (580)
T ss_pred HHHHhC-CCCEEEEEEecCCcCCChhhcCccccCCCCCCCccc--------CC---------------------------
Confidence 999876 699999999999999987545567799763222110 00
Q ss_pred HHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCcccc
Q psy2375 453 CRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGL 532 (929)
Q Consensus 453 ~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~ 532 (929)
... +. .....+++++|+++|.++++. +++|+++++|+..++++.
T Consensus 270 -------~~~------------~~------------~~~~~~~~~~~~~~L~~~~~~---~~~vv~~~adl~~~~~~~-- 313 (580)
T PRK05444 270 -------QPK------------SS------------KPGKPSYTKVFGETLCELAEK---DPKIVAITAAMPEGTGLV-- 313 (580)
T ss_pred -------ccc------------cC------------CCCcccHHHHHHHHHHHHHhh---CCCEEEEECCcCCCCCHH--
Confidence 000 00 011257899999999999887 455799999987655443
Q ss_pred chhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHH
Q psy2375 533 FRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLA 612 (929)
Q Consensus 533 f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i 612 (929)
.|++.||+||||+||+||+|+++ |+ |+|+.| ++||+.+|++|. +|++||+
T Consensus 314 -----------------------~f~~~~p~R~i~~GIaE~~mvg~--A~--GlA~~G--~~p~~~~f~~F~-~ra~dQi 363 (580)
T PRK05444 314 -----------------------KFSKRFPDRYFDVGIAEQHAVTF--AA--GLATEG--LKPVVAIYSTFL-QRAYDQV 363 (580)
T ss_pred -----------------------HHHHHhhhhccCCChHHHHHHHH--HH--HHHHCC--CeeEEEeeHHHH-HHHHHHH
Confidence 25577899999999999998886 54 488887 999999999995 6999999
Q ss_pred HHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 613 WLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 613 ~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
+..++++..+++++++++|. .+++|+|||+.+|++++|++||++|++|+|++|++.+++.++++.. .|+|+|++|.
T Consensus 364 ~~~~a~~~~pv~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~---~P~~ir~~r~ 439 (580)
T PRK05444 364 IHDVALQNLPVTFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDD---GPIAIRYPRG 439 (580)
T ss_pred HHHhhhcCCCEEEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC---CcEEEEecCC
Confidence 98877888889999999887 4689999999999999999999999999999999999999997532 3499999986
Q ss_pred CCCCCCCCCCcccccccccceE-EEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchh
Q psy2375 693 NENYSHPGLKKGQEKGIIKGLY-LLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 693 ~e~~~~p~~~~~~~~~i~~G~y-~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~ 770 (929)
.. +..+......+..|.| ++++| +|++||++|++|++|+ ||+.|+ +++|||++|++|||++
T Consensus 440 ~~----~~~~~~~~~~~~~Gk~~vl~~G------~dvtIia~G~~v~~al~Aa~~L~-----~~~VId~~~i~p~D~~-- 502 (580)
T PRK05444 440 NG----VGVELPELEPLPIGKGEVLREG------EDVAILAFGTMLAEALKAAERLA-----SATVVDARFVKPLDEE-- 502 (580)
T ss_pred CC----CCCCCCCcccccCCceEEEEcC------CCEEEEEccHHHHHHHHHHHHhC-----CCEEEEeCcCCccCHH--
Confidence 52 2221110123444544 66653 6999999999999999 999995 7999999999999875
Q ss_pred hhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-C--CcEEEEec-CcccccCChhhHHhh
Q psy2375 771 ETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-G--RIYKVLGT-DGFGCSDTRKKLRDF 844 (929)
Q Consensus 771 ~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~--~~~~~lG~-d~Fg~sgs~~~L~~~ 844 (929)
++.++++++ +++|++|||.. |+++.|.+++.+ + .++.++|+ |.|+.|+++++|+++
T Consensus 503 -----------------~i~~~~~~~-~~vv~vEe~~~~gG~g~~va~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~ 564 (580)
T PRK05444 503 -----------------LLLELAAKH-DLVVTVEEGAIMGGFGSAVLEFLADHGLDVPVLNLGLPDEFIDHGSREELLAE 564 (580)
T ss_pred -----------------HHHHHHhcC-CeEEEEECCCCCCCHHHHHHHHHHhhcCCCCEEEEecCCcCCCCCCHHHHHHH
Confidence 456777777 79999999986 799988888864 1 46889999 889999999999999
Q ss_pred hcceeheeccccccC
Q psy2375 845 FENIIHMKKIIKVPN 859 (929)
Q Consensus 845 fgldae~Iv~~al~~ 859 (929)
||+|+++|++++..+
T Consensus 565 ~gl~~~~I~~~i~~~ 579 (580)
T PRK05444 565 LGLDAEGIARRILEL 579 (580)
T ss_pred HCcCHHHHHHHHHhh
Confidence 999999999887654
No 21
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.5e-84 Score=772.11 Aligned_cols=565 Identities=20% Similarity=0.196 Sum_probs=466.8
Q ss_pred cccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEE
Q psy2375 58 YINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIY 137 (929)
Q Consensus 58 ~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~ 137 (929)
+|+.|+.|.+.+..+.++|+++| ++||..++..+.+ + |||+++++|+++|..++ ++.|+.| +|.+||
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~-~~ir~~~~~~~~~-~------~Gh~~~~lg~vel~~al-~~~f~~~----~D~ii~ 68 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLA-SEIRTALLEKDSA-H------GGHVGPNLGVVELTIAL-HYVFNSP----KDKIVW 68 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHH-HHHHHHHHHHHHh-c------CCCcCcchhHHHHHHHH-HhhcCCC----CCcEEE
Confidence 47888999999999999999999 5899999999965 3 79999999999999999 4568776 689999
Q ss_pred eCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccC
Q psy2375 138 IQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITN 217 (929)
Q Consensus 138 ~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~ 217 (929)
|+||++ |++++++||-. .+...|+. +++++||++.+++ +..|.+|+.|+|++.|+|+|+|.|+ +
T Consensus 69 d~ghr~---~~~~l~~G~~~--~~~~~~~~---g~~~G~~~~~~s~-~~~~~~g~~~~~ls~A~G~A~A~k~-------~ 132 (581)
T PRK12315 69 DVSHQS---YPHKMLTGRKE--AFLDPDHY---DDVTGYTNPEESE-HDFFTVGHTSTSIALATGLAKARDL-------K 132 (581)
T ss_pred ecCCch---HHHHHHcCCcc--chhhHHHc---CCCCCCCCCCCCC-CCCcCCCcHHHHHHHHHHHHHHHHh-------c
Confidence 999999 99999999853 34455665 7899999998754 4558999999999999999988886 3
Q ss_pred CCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchH--------HHHHHHhhCCceEE
Q psy2375 218 TINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQ--------ELEAHFYGVGWNVI 289 (929)
Q Consensus 218 ~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~--------~l~~~f~~~Gw~vi 289 (929)
+.+++||||+|||+++||++|||||+|+.+++ |||||||+|.|++++|+.+...... ++..+|+++||+++
T Consensus 133 ~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~-~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~ 211 (581)
T PRK12315 133 GEKGNIIAVIGDGSLSGGLALEGLNNAAELKS-NLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYR 211 (581)
T ss_pred CCCCeEEEEECchhhhcchHHHHHHHHHhhCC-CEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEE
Confidence 45689999999999999999999999999995 7999999999999999976432222 24678999999999
Q ss_pred EEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHH
Q psy2375 290 KVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIY 369 (929)
Q Consensus 290 ~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~ 369 (929)
.|+ ||||+++|+
T Consensus 212 ~v~--------------------------------------------------------------------DG~D~~~l~ 223 (581)
T PRK12315 212 YVE--------------------------------------------------------------------DGNDIESLI 223 (581)
T ss_pred Eee--------------------------------------------------------------------CCCCHHHHH
Confidence 985 999999999
Q ss_pred HHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHH
Q psy2375 370 SAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQY 449 (929)
Q Consensus 370 ~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~ 449 (929)
+|+++|++. ++|++|+++|+||+|+++++++...||...+++.+ .
T Consensus 224 ~a~~~a~~~-~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~--------------------------~-------- 268 (581)
T PRK12315 224 EAFKEVKDI-DHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLE--------------------------T-------- 268 (581)
T ss_pred HHHHHHHhC-CCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcc--------------------------c--------
Confidence 999999874 78999999999999998767888888986332210 0
Q ss_pred HHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCc
Q psy2375 450 LKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGM 529 (929)
Q Consensus 450 ~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl 529 (929)
+ . +. . + . .+.+++++|+++|.++++. +++|+++++|+..++++
T Consensus 269 --------~-~-~~-----~-----~-----------~---~~~~~~~~~~~~l~~~~~~---d~~i~~i~~~~~~~~~~ 311 (581)
T PRK12315 269 --------G-Q-SK-----V-----P-----------A---SGESYSSVTLDYLLKKIKE---GKPVVAINAAIPGVFGL 311 (581)
T ss_pred --------C-c-cc-----C-----C-----------C---CCcCHHHHHHHHHHHHhcc---CCCEEEEeCccccccCc
Confidence 0 0 00 0 0 0 0246789999999999887 56679999999888776
Q ss_pred cccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHH
Q psy2375 530 EGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIG 609 (929)
Q Consensus 530 ~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~ 609 (929)
. .|++.||+||||+||+||+|+++ |+| +|+.| ++||+.+|++| ++|++
T Consensus 312 ~-------------------------~f~~~fP~R~id~GIaEq~~v~~--AaG--lA~~G--~~Pvv~~fs~F-l~ra~ 359 (581)
T PRK12315 312 K-------------------------EFRKKYPDQYVDVGIAEQESVAF--ASG--IAANG--ARPVIFVNSTF-LQRAY 359 (581)
T ss_pred H-------------------------HHHHhccccccCCCchHHHHHHH--HHH--HHHCc--CeEEEEeeHHH-HHHHH
Confidence 5 35577899999999999999887 554 88888 99999999999 57999
Q ss_pred HHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 610 DLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 610 d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
||+...++++..+|+++++++|+.. ||+|||+++|++++|++||++|++|+|++|++.+++.+++...+ |+|+|+
T Consensus 360 dQi~~d~a~~~lpv~~~~~~~g~~~--dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~g---P~~ir~ 434 (581)
T PRK12315 360 DQLSHDLAINNNPAVMIVFGGSISG--NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEH---PVAIRV 434 (581)
T ss_pred HHHHHHHHhcCCCEEEEEECCcccC--CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCC---cEEEEE
Confidence 9998877777788999999987763 99999999999999999999999999999999999999975223 499999
Q ss_pred ecCCCCCCCCCCCcc-cccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEccccccccc
Q psy2375 690 TVMNENYSHPGLKKG-QEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLAR 767 (929)
Q Consensus 690 ~~~~e~~~~p~~~~~-~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~ 767 (929)
+|... +..+.. ...... ...+++++ .|++||++|++|++|+ ||+.|++++||+++|||++|++|||+
T Consensus 435 ~r~~~----~~~~~~~~~~~~~-k~~v~~~g------~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~ 503 (581)
T PRK12315 435 PEHGV----ESGPTVDTDYSTL-KYEVTKAG------EKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDE 503 (581)
T ss_pred cCCcc----CCCCCCccCcccc-eEEEEecC------CCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCH
Confidence 98652 222111 111122 23455553 5999999999999999 99999876699999999999999998
Q ss_pred chhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-CCcEEEEec-CcccccCChhhHHh
Q psy2375 768 DGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-GRIYKVLGT-DGFGCSDTRKKLRD 843 (929)
Q Consensus 768 ~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~~~~~~lG~-d~Fg~sgs~~~L~~ 843 (929)
+.+ .++.+.+ +.+|++|||+. |+++.|.+++.+ +.++.++|+ |.|+.||++++|++
T Consensus 504 ~~i-------------------~~~~~~~-~~vvtvEe~~~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~ 563 (581)
T PRK12315 504 ELL-------------------EKLKEDH-ELVVTLEDGILDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYK 563 (581)
T ss_pred HHH-------------------HHHHhhC-CEEEEEcCCCcCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHH
Confidence 643 4555565 78999999976 699999999875 256889999 78999999999999
Q ss_pred hhcceeheeccccccCc
Q psy2375 844 FFENIIHMKKIIKVPNI 860 (929)
Q Consensus 844 ~fgldae~Iv~~al~~L 860 (929)
+||+|+++|++++..++
T Consensus 564 ~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 564 RNHLTPEQIVEDILSVL 580 (581)
T ss_pred HHCcCHHHHHHHHHHHh
Confidence 99999999999876543
No 22
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=4.3e-79 Score=676.30 Aligned_cols=384 Identities=59% Similarity=1.050 Sum_probs=360.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC-CCCCCCCCcEEEeCCCchHHHHHHHHH
Q psy2375 74 IKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR-APTHSHGGDLIYIQGHSAPGVYARAFL 152 (929)
Q Consensus 74 ~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~-~p~~~~~dd~i~~~GH~ap~~Ya~~~l 152 (929)
.|+++++++.||+++++|+.++++.+.++|||+|+++|+++|+.+||.++|+ .|+++++|+ |+|+||+||++||++++
T Consensus 1 ~~i~~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l 79 (386)
T cd02017 1 LEIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFL 79 (386)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHH
Confidence 3788999999999999999999977888999999999999999999988888 477777888 88999999999999999
Q ss_pred cCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCcc
Q psy2375 153 EGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEM 232 (929)
Q Consensus 153 ~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~ 232 (929)
.|++++++|++|||..+..++++||+|..+|++++++|||+|+|+++|+|+|++.|++++|+..++.+++|||++|||||
T Consensus 80 ~G~~~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl 159 (386)
T cd02017 80 EGRLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEM 159 (386)
T ss_pred cCCCCHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEccccc
Confidence 99999999999999721127999999988888799999999999999999999999999887656678999999999999
Q ss_pred CCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHH
Q psy2375 233 DEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKI 312 (929)
Q Consensus 233 ~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~ 312 (929)
+||.+|||+++|++++|+|||+|||+|.+++||+|..++...+++.++|++|||+|++|.||+.||.||++|.+++|++|
T Consensus 160 ~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~ 239 (386)
T cd02017 160 DEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQR 239 (386)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHH
Confidence 99999999999999999999999999999999999986556799999999999999999999999999999999999999
Q ss_pred HHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 313 MMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 313 ~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
|++|+|++||+++.++|+++||+|||+||.++.+|.+++|++||.+.|+|||+.+|++||++|++++++||+|+|+|+||
T Consensus 240 ~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kPt~Iia~TikG 319 (386)
T cd02017 240 MEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAKTIKG 319 (386)
T ss_pred HHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCCeEEEEeCeec
Confidence 99999999999999999999999999999999999999999999998899999999999999998778999999999999
Q ss_pred cCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhC
Q psy2375 393 YGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLG 458 (929)
Q Consensus 393 ~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~ 458 (929)
||.+.++|+.+.+|+..++++++++++++.+|++..|+++.+-+||.+.+.++++.|..+||-+++
T Consensus 320 ~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (386)
T cd02017 320 YGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPVSDEQLEEGPYYKPPEGSEEIKYLHERRHALG 385 (386)
T ss_pred CCCChhccCCcchhcCCCCCHHHHHHHHHHcCCCCCHHHhccCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 999866899999998558999999999999999999999999999999999999999999887764
No 23
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=4.8e-64 Score=597.72 Aligned_cols=629 Identities=18% Similarity=0.178 Sum_probs=469.7
Q ss_pred CCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCc-EEEeCCCchHHHHHHHHHcC-----C--CCHHH--Hh-hhcccc
Q psy2375 100 SSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGD-LIYIQGHSAPGVYARAFLEG-----R--LTEEQ--MI-NFRQEV 168 (929)
Q Consensus 100 ~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd-~i~~~GH~ap~~Ya~~~l~G-----r--~~~~~--l~-~fR~~~ 168 (929)
..+-||+|++.|...+|..| |.+.+.. +-+. +|+++||++|++||.++|+| + +|.++ |. .|||++
T Consensus 46 ~r~~GHwGt~pgln~vyahl-n~li~~~---~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs 121 (785)
T PRK05261 46 PRLLGHWGTTPGLNFIYAHL-NRLIRKY---DLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS 121 (785)
T ss_pred cccCCCCCCcHHHHHHHHHH-HHHHhhc---CCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc
Confidence 55679999999999999988 5555531 1222 68899999999999999999 3 44444 88 699997
Q ss_pred CCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcc---cHHHHHHHH
Q psy2375 169 DGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPE---SISEISMAA 245 (929)
Q Consensus 169 ~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~---~~eAl~~A~ 245 (929)
..+|++|||.| ..|+ ...++|++|+|+++|+|+| + +..+.+|+||+||||+++|. +|++.++++
T Consensus 122 ~pgg~~sH~~~-~tPG-i~~~~G~LG~gls~A~G~A-----l------~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~ 188 (785)
T PRK05261 122 FPGGIPSHAAP-ETPG-SIHEGGELGYSLSHAYGAA-----F------DNPDLIVACVVGDGEAETGPLATSWHSNKFLN 188 (785)
T ss_pred CCCCcCCCCCC-CCCC-eeeCCCchhhHHHHHHHHH-----H------cCCCCEEEEEECcCchhhhhhHHHhhhhhhcc
Confidence 77899999986 5686 7999999999999999999 4 23467999999999999998 599999999
Q ss_pred HcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccc
Q psy2375 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYR 325 (929)
Q Consensus 246 ~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~ 325 (929)
..+++||+.|++.|+++|++|+.......+++.++|+++||+++.|
T Consensus 189 ~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~V---------------------------------- 234 (785)
T PRK05261 189 PATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFV---------------------------------- 234 (785)
T ss_pred cccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEE----------------------------------
Confidence 9999999999999999999999853233489999999999999998
Q ss_pred cCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHH---------------HHHhCC--CCCe--EEE
Q psy2375 326 SKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFK---------------MAQKNK--DKPT--VLL 386 (929)
Q Consensus 326 ~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~---------------~a~~~~--~~P~--vI~ 386 (929)
||||+.+++++++ +|+... .+|+ +|+
T Consensus 235 -----------------------------------DG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii 279 (785)
T PRK05261 235 -----------------------------------EGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIV 279 (785)
T ss_pred -----------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEE
Confidence 8999999888844 333221 5899 999
Q ss_pred EeeecccCCcc-----CCCCCcccccccCCCHH-HHHHHHhhc-CC--CCCCcccccCCCCCCCCCcHHHHHHH-HHHHH
Q psy2375 387 IKSIKGYGLGR-----FGEARNTAHNIKKIDHQ-GIKSIRDFL-KL--PIPDSELSLVPFYKPSKNSPEIQYLK-NCRKK 456 (929)
Q Consensus 387 ~~T~KG~G~~~-----~~e~~~~~H~~~~l~~~-~~~~~r~~~-~~--p~~d~~~~~~~f~~~~~~~~~~~~~~-~~~~~ 456 (929)
++|+||||.+. ..|+.+.+||+ ||+.+ +.++.++.+ +| .-..+ ..|..+.+..++++.+. +.+++
T Consensus 280 ~rT~kG~g~p~~~dg~~~eGs~raHqv-PL~~~~~~~~~~~~L~~wl~sy~p~----elF~~~g~l~~~~~~l~p~g~~r 354 (785)
T PRK05261 280 LRTPKGWTGPKEVDGKPIEGSWRAHQV-PLANVRDNPEHLDLLEDWLRSYRPE----ELFDEDGRLKPELAALAPKGDRR 354 (785)
T ss_pred EECCccCCCCcccCCcccCCCchhhcC-CCCCcccCHHHHHHHHHHhhcCChh----hhcCCCCchhHHHHHhccCchhh
Confidence 99999999652 26899999998 88764 555555555 44 11111 12777777777766654 22344
Q ss_pred hCCCCCccccccc-ccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhc-cCCCCceeeeecCCCCCcCccccch
Q psy2375 457 LGGYLPKRRQKSD-EKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRD-KNIGNRVVPILVDESRTFGMEGLFR 534 (929)
Q Consensus 457 l~g~~p~~~~~~~-~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~-~~i~~rIv~i~aD~~~s~gl~~~f~ 534 (929)
++. .|.-..... +.+.+|+...|..-..........+||. ++..|+++++. |+. +++++||+..|++|.+.|.
T Consensus 355 ~~~-~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~---frvf~pDe~~SNrl~~~f~ 429 (785)
T PRK05261 355 MGA-NPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDN---FRIFGPDETASNRLQAVFE 429 (785)
T ss_pred hcC-CchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHHHHhCCCc---eEEEcCCcchhhccHhHHh
Confidence 543 454332211 1466687665543211110124567888 99999999887 652 5778999999999886653
Q ss_pred hcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhH----HHhHHH
Q psy2375 535 QIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFG----LQRIGD 610 (929)
Q Consensus 535 ~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~----~qR~~d 610 (929)
.++= .--....|.| ...+..||+++ ||+|++|.+. ..||++.| .+||+.+|..|. ++...-
T Consensus 430 ~t~r--~~~~~~~~~d------~~~~~~Grvie-~LsEh~~~g~----~~Gy~LtG--~~~~~~sYeaF~~ivd~m~~q~ 494 (785)
T PRK05261 430 VTDR--QWMAEILPYD------EHLAPDGRVME-VLSEHLCEGW----LEGYLLTG--RHGFFSSYEAFIHIVDSMFNQH 494 (785)
T ss_pred hhcc--ccccccCCcc------cccCCCCCeee-eecHHHHHHH----HHHHHhcC--CCcceecHHHHHHHHHHHHHHH
Confidence 2210 0000122222 13567799999 9999987664 45688876 999999999986 111111
Q ss_pred HHHHhhh------hcCCcEEEEeecCCeeecCCCCCCCC---hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC
Q psy2375 611 LAWLAGD------IRARGFLIGGTSGRTTINGEGLQHED---GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN 681 (929)
Q Consensus 611 ~i~~~~~------~~~~~v~i~~t~~~~~~g~dG~tHq~---~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~ 681 (929)
..|.-.+ ...+.+.++.||..+..++||+|||+ ++.++.+|. |+++||.|+|++|+.++++.|+++..++
T Consensus 495 ~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p 573 (785)
T PRK05261 495 AKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYI 573 (785)
T ss_pred HHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCC
Confidence 1232110 11334557789999999999999999 888888888 9999999999999999999999985333
Q ss_pred CceEEEEEecCCCCCCCCCCCcc--cccccccceEEEeccCCc-CCCCcEEEEEeChhHHH-HH-HHHHHhccC-CCceE
Q psy2375 682 QEDVFYYITVMNENYSHPGLKKG--QEKGIIKGLYLLKNHNNE-KSKLKVQLIGSGAILRE-IL-ASKILLQEW-DIDSA 755 (929)
Q Consensus 682 ~~~v~~rl~~~~e~~~~p~~~~~--~~~~i~~G~y~l~~g~~~-~~g~dv~Lia~G~~v~~-al-AAe~L~~~~-GI~a~ 755 (929)
..|.++|.+ +|.+... ..+.+.+|+|++.+.+.+ ...+||+|+++|+++.. |+ |+++|++++ ||+++
T Consensus 574 ---~~IvlsRQ~----lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvR 646 (785)
T PRK05261 574 ---NVIVAGKQP----RPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIR 646 (785)
T ss_pred ---EEEEEeCCC----CcccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEE
Confidence 566788765 4655332 235688999999854211 11369999999999977 99 999998755 89999
Q ss_pred EEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccC--C-CcEEEEecCcc
Q psy2375 756 VWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPK--G-RIYKVLGTDGF 832 (929)
Q Consensus 756 Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~--~-~~~~~lG~d~F 832 (929)
||||+ .+|+.+. ..-||....+.+| ++++... .|||. .++|+++.|.+.+.. + .++++.|..+-
T Consensus 647 VVSv~--dLf~lQ~------~~~~~~~lsd~~f-~~lFt~d-~pvif---~~hgyp~~i~~l~~~r~~~~~~~v~gy~e~ 713 (785)
T PRK05261 647 VVNVV--DLMKLQP------PSEHPHGLSDREF-DALFTTD-KPVIF---AFHGYPWLIHRLTYRRTNHHNFHVRGYKEE 713 (785)
T ss_pred EEEec--hhhhhCC------cccCCCCCCHHHH-HHhCCCC-CcEEE---EeCCCHHHHHHHhccCCCCCccEEEEEecC
Confidence 99995 5554332 2368888877777 7898776 79888 566899999988775 2 57889999889
Q ss_pred cccCChhhHHhhhcceeheeccccccCc
Q psy2375 833 GCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 833 g~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
|...|+.+++-..++|..+++..++..+
T Consensus 714 g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 714 GTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999999999999999999988777654
No 24
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-56 Score=470.74 Aligned_cols=299 Identities=20% Similarity=0.244 Sum_probs=264.3
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEecccc
Q psy2375 492 KISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGIN 571 (929)
Q Consensus 492 ~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIa 571 (929)
..++|.+|++.|.+|++. +++||++++|+++|+.+. .|.+.||+||||+||+
T Consensus 6 ~~~~R~~~g~~L~~l~~~---~~diVvl~ADl~~St~~~-------------------------~f~~~fPdR~~NvGIa 57 (312)
T COG3958 6 TESLRKVYGETLAELGRK---NSDIVVLDADLSSSTKTG-------------------------YFAKEFPDRFFNVGIA 57 (312)
T ss_pred chHHHHHHHHHHHHHHhc---CCCEEEEecccccccchh-------------------------HHHHhCchhheecchH
Confidence 458999999999999998 566799999999998876 3567899999999999
Q ss_pred chhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHh
Q psy2375 572 EAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLAS 651 (929)
Q Consensus 572 E~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r 651 (929)
||+||++ ||| +|+.| ++||+++|++|.+.|++||++++.+|+..||++++||+|++.++||+|||.+||+++||
T Consensus 58 EQ~mvg~--AAG--LA~~G--k~Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR 131 (312)
T COG3958 58 EQDMVGT--AAG--LALAG--KKPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMR 131 (312)
T ss_pred HHHHHHH--HHH--HHhcC--CCceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHh
Confidence 9999987 665 88888 99999999999888999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCC-CCcc-cccccccceEEEeccCCcCCCCcEE
Q psy2375 652 TIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPG-LKKG-QEKGIIKGLYLLKNHNNEKSKLKVQ 729 (929)
Q Consensus 652 ~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~-~~~~-~~~~i~~G~y~l~~g~~~~~g~dv~ 729 (929)
.+||++|++|||+.+++.++.+..+. .|| +|+|+.|.+ .|. ++++ ..+.++| +++|++| .|++
T Consensus 132 ~lpn~~V~~P~D~v~~~~i~~~~~~~-~GP---~Y~Rl~R~~----~p~~~~~~~~~F~iGk-a~vLrdG------~D~t 196 (312)
T COG3958 132 GLPNMTVIAPADAVETRAILDQIADY-KGP---VYMRLGRGK----VPVVVDEGGYTFEIGK-ANVLRDG------SDLT 196 (312)
T ss_pred cCCCceEEccCcHHHHHHHHHHHHhc-CCC---EEEEecCCC----CCceecCCCceEeccc-eeEeecC------CceE
Confidence 99999999999999999999999988 343 999999864 233 3333 3344433 6888885 6999
Q ss_pred EEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc
Q psy2375 730 LIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR 808 (929)
Q Consensus 730 Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~ 808 (929)
||++|.||.++| ||++|+++ ||++.|+||+|+||+|++.+ ....+.+ +.|||+|+|+.
T Consensus 197 iiA~G~mv~~al~AA~~L~~~-GIsa~Vi~m~tIKPiD~~~i-------------------~~~A~~t-~~IvT~EeHsi 255 (312)
T COG3958 197 IIATGVMVAEALEAAEILKKE-GISAAVINMFTIKPIDEQAI-------------------LKAARET-GRIVTAEEHSI 255 (312)
T ss_pred EEecCcchHHHHHHHHHHHhc-CCCEEEEecCccCCCCHHHH-------------------HHHHhhc-CcEEEEeccee
Confidence 999999999999 99999999 99999999999999998754 3444555 78999999975
Q ss_pred --hhHHHHHhhccC-C-CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 809 --LFAEQVRAFIPK-G-RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 809 --~~~~~i~~~l~~-~-~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
|+++.+++++.+ + .+++++|+ |.||+||+..+|+++||||+++|+++++.++
T Consensus 256 ~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 256 IGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred ecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 899999999987 3 68899999 9999999999999999999999999887653
No 25
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=3.2e-56 Score=493.80 Aligned_cols=280 Identities=31% Similarity=0.461 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCC----CCCCCCCcEEEeCCCchHHHHHHHHHc
Q psy2375 78 EHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA----PTHSHGGDLIYIQGHSAPGVYARAFLE 153 (929)
Q Consensus 78 ~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~----p~~~~~dd~i~~~GH~ap~~Ya~~~l~ 153 (929)
+++.+.||+++++||.+|+ +||+|+++|++++..+||.++++. |+|+++|+||+|+||+||++||.+++.
T Consensus 2 ~~~a~~iR~~~~~~~~~a~------sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~ 75 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAG------SGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALR 75 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhC------CCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHh
Confidence 5566889999999999998 799999999999999999998874 677889999999999999999999999
Q ss_pred CC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcc---ccCCCCcEEEEEEcC
Q psy2375 154 GR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARK---ITNTINRKIWILCGD 229 (929)
Q Consensus 154 Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~---~~~~~~~~v~~~~GD 229 (929)
|+ +++++|++||+. ++.+++||.....|+ ++++|||+|+|+++|+|+|+|+|+++++. ..+..+++|||++||
T Consensus 76 G~~~~~~~L~~fr~~--~s~~~gHP~~~~~~g-ie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GD 152 (332)
T PF00456_consen 76 GYDLSEEDLKTFRQL--GSRLPGHPEYGKTPG-IEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGD 152 (332)
T ss_dssp TSSS-HHHHTTTTST--TSSSSSSTTTTTSTT--SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEH
T ss_pred cCCCCHHHHHHhccC--CCCCCCCCcccCCce-eEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecC
Confidence 99 999999999997 667899998766786 89999999999999999999999987652 235668899999999
Q ss_pred CccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHH
Q psy2375 230 GEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGIL 309 (929)
Q Consensus 230 Ge~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l 309 (929)
||++||.+|||+++|++.+|+|||+|||+|.+++||++... ..+++.++|+++||+|++|.
T Consensus 153 Gel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~--~~~~~~~k~~a~Gw~v~~v~----------------- 213 (332)
T PF00456_consen 153 GELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIV--FSEDIAKKFEAFGWNVIEVC----------------- 213 (332)
T ss_dssp HHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGT--HHSHHHHHHHHTT-EEEEEE-----------------
T ss_pred ccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCcccc--cchHHHHHHHHhhhhhcccc-----------------
Confidence 99999999999999999999999999999999999999863 56789999999999999984
Q ss_pred HHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 310 KKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 310 ~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
||||+++|++|+++|+..+++|++|+|+|
T Consensus 214 ---------------------------------------------------dGhd~~~i~~A~~~a~~~~~kP~~Ii~~T 242 (332)
T PF00456_consen 214 ---------------------------------------------------DGHDVEAIYAAIEEAKASKGKPTVIIART 242 (332)
T ss_dssp ---------------------------------------------------ETTBHHHHHHHHHHHHHSTSS-EEEEEEE
T ss_pred ---------------------------------------------------cCcHHHHHHHHHHHHHhcCCCCceeecce
Confidence 89999999999999998889999999999
Q ss_pred ecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcH
Q psy2375 390 IKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSP 445 (929)
Q Consensus 390 ~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~ 445 (929)
+||+|++. .|+.+.+|+. +|++++++.+|+.+|++ + .||..|++...
T Consensus 243 vkG~G~~~-~e~~~~~Hg~-~l~~ee~~~~k~~lg~~--~-----~~F~V~~eV~~ 289 (332)
T PF00456_consen 243 VKGKGVPF-MEGTAKWHGS-PLTEEEVEQAKKELGWD--Q-----EPFEVPEEVYD 289 (332)
T ss_dssp -TTTTSTT-TTTSGGGTSS---HHHHHHHHHHHTTSS--T-----STTCGCHHHHH
T ss_pred EEecCchh-hcccchhhcc-CCcHHHHHHHHHHcCCC--C-----CCcccCHHHHH
Confidence 99999987 7999999997 89999999999999997 1 47888766544
No 26
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-50 Score=408.16 Aligned_cols=234 Identities=31% Similarity=0.470 Sum_probs=215.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHH
Q psy2375 72 GNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVY 147 (929)
Q Consensus 72 ~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Y 147 (929)
+..+|+++++ .||++++.|+..++ .||.++++|++++..+||.+.++ .|.++.+|+||+|+||++|++|
T Consensus 6 ~~~~L~~~A~-~iRr~~v~m~~~~~------~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlY 78 (243)
T COG3959 6 SVDELERIAR-EIRRNIVRMLANAG------SGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALY 78 (243)
T ss_pred cHHHHHHHHH-HHHHHHHHHhcccC------CCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHH
Confidence 5678999886 79999999999887 47999999999999999888765 3566789999999999999999
Q ss_pred HHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEE
Q psy2375 148 ARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILC 227 (929)
Q Consensus 148 a~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~ 227 (929)
|.++..|+|++|+|.+|++. ++.|++||.....|+ ++.+|||+|+|++.|+|+|.+.| .++++.+|++++
T Consensus 79 a~Lae~G~~p~eeL~~~~~~--~srL~~Hp~~~~~pg-ve~stGSLGqGLsvavGmAlg~k-------l~~~~~~Vyvil 148 (243)
T COG3959 79 ATLAEKGYFPEEELETFRRI--GSRLPGHPERNKTPG-VEVSTGSLGQGLSVAVGMALGAK-------LKGSPYRVYVIL 148 (243)
T ss_pred HHHHHcCCCCHHHHHHhccC--CCcCCCCCccCCCCc-eeecCCcccccchHHHHHHHHHh-------hcCCCceEEEEe
Confidence 99999999999999999997 677999999877785 89999999999999999995554 367889999999
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchh
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNG 307 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~ 307 (929)
|||||+||++|||+..|++.+|+|||.|||.|.+++||.+... +...+|..+|++|||+|++|
T Consensus 149 GDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i-~~~~pL~~k~eAFGw~V~ev---------------- 211 (243)
T COG3959 149 GDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEI-MPKEPLADKWEAFGWEVIEV---------------- 211 (243)
T ss_pred cCcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhc-cCcchhHHHHHhcCceEEEE----------------
Confidence 9999999999999999999999999999999999999999985 46789999999999999998
Q ss_pred HHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEE
Q psy2375 308 ILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLI 387 (929)
Q Consensus 308 ~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~ 387 (929)
||||+++|++|+.+++..+++|+||+|
T Consensus 212 -----------------------------------------------------dG~d~~~i~~a~~~~~~~~~rP~~IIa 238 (243)
T COG3959 212 -----------------------------------------------------DGHDIEEIVEALEKAKGSKGRPTVIIA 238 (243)
T ss_pred -----------------------------------------------------cCcCHHHHHHHHHhhhccCCCCeEEEE
Confidence 899999999999999887789999999
Q ss_pred eeecc
Q psy2375 388 KSIKG 392 (929)
Q Consensus 388 ~T~KG 392 (929)
+|+||
T Consensus 239 ~Tvkg 243 (243)
T COG3959 239 KTVKG 243 (243)
T ss_pred ecccC
Confidence 99997
No 27
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=4e-44 Score=386.98 Aligned_cols=248 Identities=33% Similarity=0.495 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCC----CCCCCCCcEEEeCCCchHHHHHHHHHcCCCCH
Q psy2375 83 LIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA----PTHSHGGDLIYIQGHSAPGVYARAFLEGRLTE 158 (929)
Q Consensus 83 ~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~----p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~ 158 (929)
.||+++++|+.+++ +||+++++|+++++.+||.++++. |+++++|+||+++||++|++|+++++.|++++
T Consensus 2 ~~R~~~~~~~~~~~------~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~ 75 (255)
T cd02012 2 RIRRLSIDMVQKAG------SGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPE 75 (255)
T ss_pred hHHHHHHHHHHhcC------CCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCH
Confidence 58999999999988 799999999999999999988762 45677899999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccH
Q psy2375 159 EQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESI 238 (929)
Q Consensus 159 ~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~ 238 (929)
++|.+||+. ++.+++||.+...| .+.+++|+||+|++.|+|+|++.++ ...+++|||++||||++||.+|
T Consensus 76 ~~l~~~~~~--gs~l~gh~~~~~~~-g~~~~~GslG~gl~~avG~Ala~~~-------~~~~~~v~~i~GDG~~~~G~~~ 145 (255)
T cd02012 76 EDLKTFRQL--GSRLPGHPEYGLTP-GVEVTTGSLGQGLSVAVGMALAEKL-------LGFDYRVYVLLGDGELQEGSVW 145 (255)
T ss_pred HHHHHhccc--CCCCCCCCCCCCCC-CeeeCCcchhhHHHHHHHHHHHHHH-------hCCCCEEEEEECcccccccHHH
Confidence 999999997 55799999988766 5789999999999999999987775 2457899999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcc
Q psy2375 239 SEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLD 318 (929)
Q Consensus 239 eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~d 318 (929)
||++.|++++|+||++|+|+|.+++++++... ....++.++|+++||++++|
T Consensus 146 eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~-~~~~~~~~~~~a~G~~~~~v--------------------------- 197 (255)
T cd02012 146 EAASFAGHYKLDNLIAIVDSNRIQIDGPTDDI-LFTEDLAKKFEAFGWNVIEV--------------------------- 197 (255)
T ss_pred HHHHHHHHcCCCcEEEEEECCCccccCcHhhc-cCchhHHHHHHHcCCeEEEE---------------------------
Confidence 99999999999999999999999999988542 34578999999999999998
Q ss_pred cchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccC
Q psy2375 319 GEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRF 398 (929)
Q Consensus 319 g~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~ 398 (929)
+|||+++|++|+++|++..++|++|+++|+||+|++.
T Consensus 198 ------------------------------------------~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~g~~~- 234 (255)
T cd02012 198 ------------------------------------------DGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKGVPF- 234 (255)
T ss_pred ------------------------------------------CCCCHHHHHHHHHHHHHcCCCCEEEEEEeecccccCc-
Confidence 8999999999999998755799999999999999996
Q ss_pred CCCCcccccccCCCHHHHHH
Q psy2375 399 GEARNTAHNIKKIDHQGIKS 418 (929)
Q Consensus 399 ~e~~~~~H~~~~l~~~~~~~ 418 (929)
+|+...+|+. +++++++++
T Consensus 235 ~e~~~~~H~~-~~~~~~~~~ 253 (255)
T cd02012 235 MENTAKWHGK-PLGEEEVEL 253 (255)
T ss_pred cCCCccccCC-CCCHHHHHh
Confidence 7889999987 778777654
No 28
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=9.9e-45 Score=380.89 Aligned_cols=264 Identities=22% Similarity=0.274 Sum_probs=181.1
Q ss_pred ccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEe
Q psy2375 59 INTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYI 138 (929)
Q Consensus 59 ~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~ 138 (929)
|++|+.|++.+..+.+||+++| .+||..+++.|++. |||+||++|++||+.+|| ++|+.| .|++||+
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La-~eiR~~ii~~vs~~-------GGHl~snLGvVELTiALH-~vFd~p----~DkivwD 67 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLA-QEIREFIIETVSKT-------GGHLASNLGVVELTIALH-YVFDSP----KDKIVWD 67 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHH-HHHHHHHHHHCTCC-------CSTHHHHHCCHHHHHHHH-HHS-TT----TSEEEES
T ss_pred CCCCCCHHHHHcCCHHHHHHHH-HHHHHHHHHHHhhc-------CCCCCCCccHHHHHHHHH-HHhCCC----CCeEEEe
Confidence 5789999999999999999999 58999999999774 899999999999999995 479887 7999999
Q ss_pred CCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCC
Q psy2375 139 QGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT 218 (929)
Q Consensus 139 ~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~ 218 (929)
+|||| |+|++||||. +++.+.||. +|||+||.|.++| |+.|.+||.|+++|.|+|+|.|++. .+
T Consensus 68 vGHQ~---Y~HKiLTGR~--~~f~TlRq~---gGlSGF~~r~ES~-~D~f~~GHsstsiSaa~Gma~ar~l-------~~ 131 (270)
T PF13292_consen 68 VGHQA---YVHKILTGRR--DRFHTLRQY---GGLSGFPKRSESE-YDAFGAGHSSTSISAALGMAVARDL-------KG 131 (270)
T ss_dssp SSTT----HHHHHCTTTC--CCGGGTTST---TS--SS--TTT-T-T--S--SSSS-HHHHHHHHHHHHHH-------HT
T ss_pred ccccc---chhhhccCcH--HHhchhhhc---CCcCCCCCcccCC-CCcccCCccHhHHHHHHHHHHHHHh-------cC
Confidence 99999 9999999997 679999998 9999999999988 8999999999999999999988885 23
Q ss_pred CCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHH-----HHHHhhCCceEEEEec
Q psy2375 219 INRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQEL-----EAHFYGVGWNVIKVIW 293 (929)
Q Consensus 219 ~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l-----~~~f~~~Gw~vi~v~~ 293 (929)
.+++|+|+||||+|+.|+++||||.|+..+ .|||+|+|||.|+|+.+|++..+....+ +..++...+.+++.+
T Consensus 132 ~~~~vVaVIGDGalt~Gma~EALN~~g~~~-~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~- 209 (270)
T PF13292_consen 132 EDRKVVAVIGDGALTGGMAFEALNNAGHLK-SNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI- 209 (270)
T ss_dssp S---EEEEEETTGGGSHHHHHHHHHHHHHT--SEEEEEEE-SBSSSB--SSHCCC-------------------------
T ss_pred CCCcEEEEECCcchhHHHHHHHHHHHHhcC-CCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-
Confidence 578999999999999999999999999998 6899999999999999999865554333 223333333333211
Q ss_pred ccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccC-CCCCCcHHHHHHHH
Q psy2375 294 SSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-TFGGHDLRKIYSAF 372 (929)
Q Consensus 294 g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l-~~dGhD~~~v~~a~ 372 (929)
..+.+.+.+..++.+.. . . .||. +|+ +.|+ |+||||++++.++|
T Consensus 210 -------------~~~~~~~~r~~~s~K~~-~-------~-~lFe----------~LG---~~Y~GPiDGHdl~~Li~~l 254 (270)
T PF13292_consen 210 -------------PPIEEFAKRIKESLKGF-S-------P-NLFE----------ELG---FDYIGPIDGHDLEELIEVL 254 (270)
T ss_dssp -----------------------------------------CCCH----------HCT----EEEEEEETT-HHHHHHHH
T ss_pred -------------hHHHHHHHHHhhhhhhh-h-------H-HHHH----------HcC---CeEEeccCCCCHHHHHHHH
Confidence 23334444444443333 1 1 2332 233 4455 78999999999999
Q ss_pred HHHHhCCCCCeEEEEee
Q psy2375 373 KMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 373 ~~a~~~~~~P~vI~~~T 389 (929)
+.+++. .+|+|||++|
T Consensus 255 ~~~K~~-~gPvllHV~T 270 (270)
T PF13292_consen 255 ENAKDI-DGPVLLHVIT 270 (270)
T ss_dssp HHHCCS-SSEEEEEEE-
T ss_pred HHHhcC-CCCEEEEEeC
Confidence 999987 7899999998
No 29
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.1e-40 Score=370.97 Aligned_cols=297 Identities=13% Similarity=0.050 Sum_probs=229.9
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCC-ceEeccc
Q psy2375 492 KISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNG-QILQEGI 570 (929)
Q Consensus 492 ~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~g-R~~~~GI 570 (929)
.+++|++|+++|.+++++ +++|+++++|++...|+-+ .+..+++.||+ ||||+||
T Consensus 3 ~~~~~~a~~~~L~~~~~~---dp~iv~l~~d~~~~~g~~~---------------------~~~~f~~~fp~~R~~n~gI 58 (327)
T CHL00144 3 EVFLFEALREAIDEEMAR---DPRVFVIGEDVGHYGGSYK---------------------VTKGLHEKYGDLRVLDTPI 58 (327)
T ss_pred cchHHHHHHHHHHHHHhh---CCCEEEEeCcccccCCchh---------------------HHHHHHHHCCCccEeeccc
Confidence 468899999999999887 5667999999976544321 12256788999 9999999
Q ss_pred cchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcC------CcEEEEeecCCeeecCCCCCC-CC
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRA------RGFLIGGTSGRTTINGEGLQH-ED 643 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~------~~v~i~~t~~~~~~g~dG~tH-q~ 643 (929)
+||+|+++ |+ |||+.| ++||+.++.+|.++|++||++..++++. .++.+++...+...+++|+|| |.
T Consensus 59 aEq~~vg~--Aa--GlA~~G--~~pvv~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~ 132 (327)
T CHL00144 59 AENSFTGM--AI--GAAMTG--LRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR 132 (327)
T ss_pred cHHHHHHH--HH--HHHHCC--CEEEEEeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCcccccc
Confidence 99999887 55 488898 9999976665558999999988776553 123333344444556799999 77
Q ss_pred hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEE----EecCCCCCCCCCCCcc-cccccccceEEEec
Q psy2375 644 GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYY----ITVMNENYSHPGLKKG-QEKGIIKGLYLLKN 718 (929)
Q Consensus 644 ~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~r----l~~~~e~~~~p~~~~~-~~~~i~~G~y~l~~ 718 (929)
.+ +++|+||||+|+.|+|+.|++.+++.+++. ++ |+||| +.+.+ +.++.. ....+.+ ..++++
T Consensus 133 ~e--a~~~~iPgl~V~~Psd~~d~~~~l~~a~~~---~~-Pv~ire~~~l~~~~-----~~v~~~~~~~~~Gk-~~v~~~ 200 (327)
T CHL00144 133 LE--SYFQSVPGLQIVACSTPYNAKGLLKSAIRS---NN-PVIFFEHVLLYNLK-----EEIPDNEYLLPLEK-AEVVRP 200 (327)
T ss_pred HH--HHHhcCCCCEEEEeCCHHHHHHHHHHHHhC---CC-cEEEEEcHHhcCCC-----CCCCCCCccccCCe-eEEEEc
Confidence 75 999999999999999999999999999976 33 38887 33221 122221 1223333 456666
Q ss_pred cCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCC
Q psy2375 719 HNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSI 797 (929)
Q Consensus 719 g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~ 797 (929)
| .|++||++|.++++|+ ||+.|+++ ||+++|||++|+||||.+.+ .+.++++
T Consensus 201 G------~ditiia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~ikPlD~~~i-------------------~~~~~~t- 253 (327)
T CHL00144 201 G------NDITILTYSRMRHHVLQAVKVLVEK-GYDPEIIDLISLKPLDLGTI-------------------SKSVKKT- 253 (327)
T ss_pred C------CCEEEEEccHHHHHHHHHHHHHHhc-CCCEEEEecCcCCCCCHHHH-------------------HHHHHhh-
Confidence 4 6999999999999999 99999987 99999999999999998754 4455666
Q ss_pred CcEEEEecccc--hhHHHHHhhccCC------CcEEEEec-Ccccc-cCChhhHHhhhcceeheeccccccCc
Q psy2375 798 GPIIVATDYMR--LFAEQVRAFIPKG------RIYKVLGT-DGFGC-SDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 798 ~~vVtved~~~--~~~~~i~~~l~~~------~~~~~lG~-d~Fg~-sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
+.+|++|||+. |+++.|++++.+. .++.++|+ |.|.. +++.+++ +|+|+++|++++...+
T Consensus 254 ~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~~I~~~i~~~l 323 (327)
T CHL00144 254 HKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPAQIIEAVEQII 323 (327)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHHHHHHHHHHHH
Confidence 78999999975 7898888877541 37899999 78877 7777766 4999999998887665
No 30
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.7e-39 Score=363.25 Aligned_cols=306 Identities=13% Similarity=0.122 Sum_probs=233.2
Q ss_pred ccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEec
Q psy2375 489 NERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQE 568 (929)
Q Consensus 489 ~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~ 568 (929)
+.+++++|++|+++|.+++++ +++||++++|.+.+.|. |..+. ..+++.+|+||||+
T Consensus 23 ~~~~~~~~~a~~~aL~e~~~~---d~~iv~i~~D~~~~~g~---~~~~~-----------------~l~~~~~P~R~~d~ 79 (356)
T PLN02683 23 AAKEMTVRDALNSALDEEMSA---DPKVFIMGEEVGEYQGA---YKITK-----------------GLLQKYGPDRVLDT 79 (356)
T ss_pred cccccHHHHHHHHHHHHHHhh---CcCEEEEccccccccCc---cchhh-----------------hHHHHhCCCcEEEC
Confidence 345689999999999999988 56679999998765432 11000 12445559999999
Q ss_pred cccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcC--------CcEEEEeecCCeeecCCCCC
Q psy2375 569 GINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRA--------RGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 569 GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~--------~~v~i~~t~~~~~~g~dG~t 640 (929)
||+||+|+++ |+ |+|..| ++||+.+|.+|.++|++||++..++++. .+|++++..| .+.+ +|+|
T Consensus 80 GIAEq~~vg~--Aa--GlA~~G--~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G-~~~g-~G~t 151 (356)
T PLN02683 80 PITEAGFTGI--GV--GAAYAG--LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNG-AAAG-VGAQ 151 (356)
T ss_pred chhHHHHHHH--HH--HHHHCC--CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCC-CCCC-CCCc
Confidence 9999999887 55 488888 9999988766558999999998877665 5788888774 4444 6999
Q ss_pred CCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec--CCCCCCCCC--CCcccccccccceEEE
Q psy2375 641 HEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV--MNENYSHPG--LKKGQEKGIIKGLYLL 716 (929)
Q Consensus 641 Hq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~--~~e~~~~p~--~~~~~~~~i~~G~y~l 716 (929)
||..+ ++++|+|||++|+.|+|++|++.+++++++. ++ |+|||+.+ +.+.++.+. .+......+.+ ..++
T Consensus 152 H~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~a~~~---~g-Pv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk-~~v~ 225 (356)
T PLN02683 152 HSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKAAIRD---PD-PVVFLENELLYGESFPVSAEVLDSSFVLPIGK-AKIE 225 (356)
T ss_pred cccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHhC---CC-cEEEEEehhhccCCCCCCCCCCCccccccCCe-eEEE
Confidence 98777 7999999999999999999999999999976 33 48888521 111111111 01111112222 4455
Q ss_pred eccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhcc
Q psy2375 717 KNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEK 795 (929)
Q Consensus 717 ~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~ 795 (929)
++ |+|++||++|+++.+|+ |++.|+++ ||+++|||++|+||||.+.+ .+.+++
T Consensus 226 r~------G~dvtIia~G~~v~~Al~Aa~~L~~~-GI~v~VId~~~ikPlD~~~l-------------------~~~~~~ 279 (356)
T PLN02683 226 RE------GKDVTIVAFSKMVGYALKAAEILAKE-GISAEVINLRSIRPLDRDTI-------------------NASVRK 279 (356)
T ss_pred Ec------CCCEEEEEccHHHHHHHHHHHHHHhc-CCCEEEEECCCCCccCHHHH-------------------HHHHhh
Confidence 65 46999999999999999 99999888 99999999999999998653 456667
Q ss_pred CCCcEEEEecccc--hhHHHHHhhccCC------CcEEEEecCcccccCChhhHHhhhcc-eeheeccccccCc
Q psy2375 796 SIGPIIVATDYMR--LFAEQVRAFIPKG------RIYKVLGTDGFGCSDTRKKLRDFFEN-IIHMKKIIKVPNI 860 (929)
Q Consensus 796 ~~~~vVtved~~~--~~~~~i~~~l~~~------~~~~~lG~d~Fg~sgs~~~L~~~fgl-dae~Iv~~al~~L 860 (929)
+ +.||++|||+. |+++.|++++.+. .++.++|++.. +.+...+++++.+ +++.|++++..++
T Consensus 280 t-~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~--~~p~~~~le~~~~p~~~~i~~a~~~~~ 350 (356)
T PLN02683 280 T-NRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADV--PMPYAANLERLALPQVEDIVRAAKRAC 350 (356)
T ss_pred c-CeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCc--CCCccHHHHHhhCCCHHHHHHHHHHHH
Confidence 6 78999999986 8999998887641 37889999443 4677778888888 8999999888776
No 31
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=362.20 Aligned_cols=637 Identities=18% Similarity=0.224 Sum_probs=441.4
Q ss_pred CCCcchhhhHHHHHHHHHhhhcCCCCCCCCCc-EEEeCCCchHHHHHHHHHcCCC---------CHHHHhh-hccccCCC
Q psy2375 103 GGHLSSFASLAHILEIGFNHFWRAPTHSHGGD-LIYIQGHSAPGVYARAFLEGRL---------TEEQMIN-FRQEVDGY 171 (929)
Q Consensus 103 gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd-~i~~~GH~ap~~Ya~~~l~Gr~---------~~~~l~~-fR~~~~~~ 171 (929)
=||+|+..++..+|..+ |.+.+.- +.+. +|..+||..|++-+..||+|.+ +++.|.+ |+|++..+
T Consensus 60 lGHwGt~pg~s~~Y~H~-nr~i~~~---d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~Pg 135 (793)
T COG3957 60 LGHWGTQPGLSFIYAHL-NRLISKY---DANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPG 135 (793)
T ss_pred cccccCCCCchhhhhhh-hHHHHhh---CcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCC
Confidence 49999999999999887 5555421 1222 3555899999999999999984 4566776 46677789
Q ss_pred CCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCc---ccHHHHHHHHHcC
Q psy2375 172 GLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEP---ESISEISMAAREK 248 (929)
Q Consensus 172 gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg---~~~eAl~~A~~~~ 248 (929)
|++||-.|. +|+ ...+.|.+|.+++.|.|.| + +..+..|.|++||||-.+| .+|-+-.+-.-..
T Consensus 136 Gi~SH~~pe-tPG-sIhEGGeLGy~l~ha~gAa-----~------d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~ 202 (793)
T COG3957 136 GIGSHVAPE-TPG-SIHEGGELGYALSHAYGAA-----F------DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPAR 202 (793)
T ss_pred CcccccCCC-CCC-ccCcCcchhHHHHHHHHhh-----c------CCCCcEEEEEecccccccCccccccccccccCccc
Confidence 999998885 697 5889999999999999999 3 6678899999999966665 3466655555555
Q ss_pred CCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCC
Q psy2375 249 LDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKN 328 (929)
Q Consensus 249 L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~ 328 (929)
-.+++.|+.-|+++|+.|+--......+|...|+|+||..+.|. |. .-....+.|..+.|
T Consensus 203 dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~ve-g~---------d~~d~hq~mAa~ld---------- 262 (793)
T COG3957 203 DGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVE-GA---------DPADMHQLMAAVLD---------- 262 (793)
T ss_pred cCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEec-CC---------ChHHhhhhHHHHHH----------
Confidence 67899999999999999986644445789999999999999883 11 01122333333333
Q ss_pred chhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC--CCCCe--EEEEeeecccCCccC-----C
Q psy2375 329 SDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN--KDKPT--VLLIKSIKGYGLGRF-----G 399 (929)
Q Consensus 329 g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~--~~~P~--vI~~~T~KG~G~~~~-----~ 399 (929)
+-++.+.+.-++|++. ..+|. +|+++|.|||+.+.. .
T Consensus 263 ----------------------------------t~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~ 308 (793)
T COG3957 263 ----------------------------------TAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKL 308 (793)
T ss_pred ----------------------------------HHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceec
Confidence 1122222222234432 13343 799999999987642 5
Q ss_pred CCCcccccccCCC-----HHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHH-HHHHHhCCCCCccccccc-ccc
Q psy2375 400 EARNTAHNIKKID-----HQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLK-NCRKKLGGYLPKRRQKSD-EKL 472 (929)
Q Consensus 400 e~~~~~H~~~~l~-----~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~-~~~~~l~g~~p~~~~~~~-~~l 472 (929)
|+...+||+ |+. +++++.+.+++.-.-+. .-|..+..-.+|++.+. .+.++.+ ..|....... ..|
T Consensus 309 eg~~raHqv-Pl~~~~~~p~h~~~l~~wl~sy~p~-----elfde~gaL~~e~~~~ap~~~~Rm~-~~p~angg~l~~eL 381 (793)
T COG3957 309 EGSWRAHQV-PLKGHNLNPAHLLELEEWLKSYKPE-----ELFDEHGALKPELRELAPKGEERMG-ANPHANGGLLPREL 381 (793)
T ss_pred cccchhccC-CCCCCCCCchhhHHHHHHHHhcChH-----hhhcccCCCCHHHHHhccccccccC-CCCcccCccccccC
Confidence 677889998 553 33444444433221111 12444444556665554 2333343 3444333322 247
Q ss_pred cCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhc-cCCCCceeeeecCCCCCcCccccchhcccccccCcccccCCh
Q psy2375 473 LIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRD-KNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDK 551 (929)
Q Consensus 473 ~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~-~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~ 551 (929)
.+|++..|....... +..+...+.+.++.|.++++. ++ +..+..||+..|+++.++|+.+++-. -+...|+|
T Consensus 382 ~lPD~r~~~v~~~~~-g~~~~~~t~~lg~~l~dv~k~N~~---~fRvf~PDE~aSNrl~~v~~~tkr~~--~~~~~~ed- 454 (793)
T COG3957 382 PLPDLRDYAVEVSEP-GAVTAESTTALGRFLRDVMKLNPD---NFRVFGPDETASNRLGGVLKVTKRVW--MAVTLPED- 454 (793)
T ss_pred CCCChhhcCcccCCC-CccchhhHHHHHHHHHHHHhcCcc---ceEeeCCCcchhhhhHHHHHHhhhhh--cccccCcc-
Confidence 888887665433222 334455678899999999987 44 34667999999999999888666431 12345655
Q ss_pred hhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhH------------HHhHH-HHHHHhhhh
Q psy2375 552 DQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFG------------LQRIG-DLAWLAGDI 618 (929)
Q Consensus 552 ~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~------------~qR~~-d~i~~~~~~ 618 (929)
+-.+..||+++ -++|+.+.+ |. . ||++.| -.-|++.|-.|. ++|+. ++-|..
T Consensus 455 -----~~lsp~GRV~e-~LSEh~c~G-wl-e--gy~LtG--r~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~--- 519 (793)
T COG3957 455 -----DFLSPDGRVME-VLSEHACQG-WL-E--GYLLTG--RHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRR--- 519 (793)
T ss_pred -----cccCCCceeeh-hhcHHHHHH-HH-H--HHHhcC--CccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCC---
Confidence 23678899999 699999877 53 3 488888 777888999886 22222 112322
Q ss_pred cCCcEEEEeecCCeeecCCCCCCCChhhHHH-HhcCCC-cEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q psy2375 619 RARGFLIGGTSGRTTINGEGLQHEDGHSHVL-ASTIPN-CIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENY 696 (929)
Q Consensus 619 ~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l-~r~iPn-l~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~ 696 (929)
..+...++.|+.-+..+.+|.|||+..-+.. +...|+ ++||.|+|++.+.+++..+++.. +. +.+.++ .+++
T Consensus 520 ~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~---n~-in~iVa-~K~p- 593 (793)
T COG3957 520 PIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSR---NK-INVIVA-SKQP- 593 (793)
T ss_pred CCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhhhhHHhhcc---Cc-eEEEEe-cCCC-
Confidence 1234556678887888999999999888864 444566 69999999999999999999984 22 333332 2222
Q ss_pred CCCCCC--cccccccccceEEEeccCCcCCCCcEEEEEeChhH-HHHH-HHHHHhccCC--CceEEEEcccccccccchh
Q psy2375 697 SHPGLK--KGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAIL-REIL-ASKILLQEWD--IDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 697 ~~p~~~--~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v-~~al-AAe~L~~~~G--I~a~Vvsv~s~~pLd~~~~ 770 (929)
.|..- +..+..+.+|+-++.+.+.+...+||++.+.|.+. -+++ |+++|+++ + +.++||||..+..|.+.-
T Consensus 594 -~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~-~p~l~vRvVnVvdl~rLq~~~- 670 (793)
T COG3957 594 -RPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREE-GPELRVRVVNVVDLMRLQPPH- 670 (793)
T ss_pred -cceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHh-CccceEEEEEEecchhccCCc-
Confidence 45432 23445677888888875422114699999999877 7888 99999998 7 999999999888886542
Q ss_pred hhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccC--C-CcEEEEecCcccccCChhhHHhhhcc
Q psy2375 771 ETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPK--G-RIYKVLGTDGFGCSDTRKKLRDFFEN 847 (929)
Q Consensus 771 ~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~--~-~~~~~lG~d~Fg~sgs~~~L~~~fgl 847 (929)
-||....+.++ ++++... .|||. ..+|++..|.+.+.. + .++.+.|+..-|.+-++.+++-..++
T Consensus 671 -------~hphg~~d~ef-d~lFt~d-~pvif---~fHGy~~li~~L~y~r~~~~~~~v~Gy~e~G~tttp~dm~v~n~~ 738 (793)
T COG3957 671 -------DHPHGLSDAEF-DSLFTTD-KPVIF---LFHGYPWLIHALTYRRTNHANLHVEGYRERGTTTTPFDMFVLNRL 738 (793)
T ss_pred -------cCCCCCCHHHH-HhcCCCC-cceee---eecCcHHHhhhhheeccCCCceeEeehhhcCCcCCchhhHHhccc
Confidence 26776666666 7888776 79887 556789999887653 2 46788899888999999999988888
Q ss_pred eeheeccccccCc
Q psy2375 848 IIHMKKIIKVPNI 860 (929)
Q Consensus 848 dae~Iv~~al~~L 860 (929)
|.-+.+..+...+
T Consensus 739 dRf~~~~~a~~~l 751 (793)
T COG3957 739 DRFHLVADAGQRL 751 (793)
T ss_pred hhHHHHHHHHHHH
Confidence 8888777666555
No 32
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=3.2e-39 Score=359.74 Aligned_cols=301 Identities=13% Similarity=0.044 Sum_probs=234.2
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEeccc
Q psy2375 492 KISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEGI 570 (929)
Q Consensus 492 ~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~GI 570 (929)
++++|++|+++|.+++++ +++||++++|++.+.|+-+++ ..+++.| |+||||+||
T Consensus 3 ~~~~~~a~~~~L~~~~~~---d~~iv~l~~d~~~~~g~~~~~---------------------~~~~~~fgp~R~~d~gI 58 (327)
T PRK09212 3 QLTVREALRDAMQEEMER---DPKVFLMGEEVGEYQGAYKVT---------------------QGLLEQFGPKRVIDTPI 58 (327)
T ss_pred cchHHHHHHHHHHHHHHh---CCCEEEEcCcccccCCcchhh---------------------HHHHHHhCCCceeecch
Confidence 468999999999999887 566799999987765542211 2466778 999999999
Q ss_pred cchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcC------CcEEEEeecCCeeecCCCCCC-CC
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRA------RGFLIGGTSGRTTINGEGLQH-ED 643 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~------~~v~i~~t~~~~~~g~dG~tH-q~ 643 (929)
+||+|+++ |+ |+|+.| ++||+.+|++|.++|++||+...++++. .++.+++++++...+++|+|| |.
T Consensus 59 aE~~~vg~--Aa--GlA~~G--~~Piv~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~ 132 (327)
T PRK09212 59 TEHGFAGL--AV--GAAFAG--LRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC 132 (327)
T ss_pred hHHHHHHH--HH--HHHHcC--CeeEEEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC
Confidence 99999887 55 588888 9999999996668999999988776663 245555566666678899999 66
Q ss_pred hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcc-cccccccceEEEeccCCc
Q psy2375 644 GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKG-QEKGIIKGLYLLKNHNNE 722 (929)
Q Consensus 644 ~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~-~~~~i~~G~y~l~~g~~~ 722 (929)
.+ +++|++||++|+.|+|+.|++.+++.+++. ++ |+|++..+..-. ..|..+++ ....+.+ ..++++
T Consensus 133 ~e--a~~r~iP~l~V~~P~d~~e~~~~l~~a~~~---~~-Pv~i~~~~~~~~-~~~~~~~~~~~~~~Gk-~~vl~~---- 200 (327)
T PRK09212 133 YA--AWYSHIPGLKVVAPYFAADCKGLLKTAIRD---PN-PVIFLENEILYG-HSHEVPEEEESIPIGK-AAILRE---- 200 (327)
T ss_pred HH--HHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CC-cEEEEEchhhcC-CCCCCCCCCccccCCe-eEEEEe----
Confidence 64 999999999999999999999999999976 33 388855432100 01222221 1122323 345665
Q ss_pred CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEE
Q psy2375 723 KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPII 801 (929)
Q Consensus 723 ~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vV 801 (929)
|.|++||++|+++..|+ |++.|+++ ||+++|+|+++++|||.+.+ .+.++++ +.||
T Consensus 201 --G~di~iva~G~~~~~a~eAa~~L~~~-Gi~v~vi~~~~l~Pld~~~i-------------------~~~~~~~-~~vv 257 (327)
T PRK09212 201 --GSDVTIVTFSIQVKLALEAAELLEKE-GISVEVIDLRTLRPLDTETI-------------------IESVKKT-NRLV 257 (327)
T ss_pred --CCCEEEEEccHHHHHHHHHHHHHHhc-CCcEEEEEEecCCCCCHHHH-------------------HHHHHhC-CeEE
Confidence 46999999999999999 99999988 99999999999999998643 4555666 7899
Q ss_pred EEecccc--hhHHHHHhhccCC------CcEEEEec-CcccccCChhhHHhhhcc-eeheeccccccCc
Q psy2375 802 VATDYMR--LFAEQVRAFIPKG------RIYKVLGT-DGFGCSDTRKKLRDFFEN-IIHMKKIIKVPNI 860 (929)
Q Consensus 802 tved~~~--~~~~~i~~~l~~~------~~~~~lG~-d~Fg~sgs~~~L~~~fgl-dae~Iv~~al~~L 860 (929)
++|||.. |+++++++++.+. .++.++|. |.|+.++ ++++++++ +++.|++++..++
T Consensus 258 ~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~I~~~i~~~~ 323 (327)
T PRK09212 258 VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEEDIIEAVKKVC 323 (327)
T ss_pred EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHHHHHHHHHHH
Confidence 9999975 7899998887641 36788988 7787765 89999998 9999999887765
No 33
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=9.7e-39 Score=368.27 Aligned_cols=297 Identities=12% Similarity=0.047 Sum_probs=235.0
Q ss_pred CcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEecc
Q psy2375 491 RKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEG 569 (929)
Q Consensus 491 ~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~G 569 (929)
+.+++|++|+++|.+++++ +++|+++++|++.+.|.-++. ..+.+.| |+||||+|
T Consensus 140 ~~~~~r~a~~~al~~~~~~---d~~vv~i~~Dv~~~~ga~~~t---------------------~~l~~~fgp~R~id~g 195 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRR---DEDVFVMGEEVAEYQGAYKVT---------------------QGLLQEFGARRVIDTP 195 (464)
T ss_pred cchHHHHHHHHHHHHHHhh---CcCEEEEeCCccccCCccccc---------------------hHHHHHhCccceeecC
Confidence 3468899999999999987 566799999998765532111 1244567 99999999
Q ss_pred ccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhh--------hcCCcEEEEeecCCeeecCCCCCC
Q psy2375 570 INEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGD--------IRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 570 IaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~--------~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
|+||+++++ |+ |+|+.| ++||+.+|+.|.++|++||+++.++ ++..+++++|.+|+++. .|. |
T Consensus 196 IaEq~~vg~--Aa--GlA~~G--~rPiv~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~-h 266 (464)
T PRK11892 196 ITEHGFAGI--GV--GAAFAG--LKPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAA-Q 266 (464)
T ss_pred ccHHHHHHH--HH--HHHhCC--CEEEEEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCC-c
Confidence 999998886 44 588888 9999988876658999999987766 77778888888887643 777 9
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEE-----EEecCCCCCCCCCCCcccccccccceEEE
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFY-----YITVMNENYSHPGLKKGQEKGIIKGLYLL 716 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~-----rl~~~~e~~~~p~~~~~~~~~i~~G~y~l 716 (929)
|+.+|++++|+|||++|+.|+|++|++.+++++++. ++| +|| |+++.. ..|.+. +....+.+ .+++
T Consensus 267 hs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~---~~P-v~ile~~~ry~~~~---~vp~~~-~~~~~~Gk-a~v~ 337 (464)
T PRK11892 267 HSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRD---PNP-VIFLENEILYGQSF---DVPKLD-DFVLPIGK-ARIH 337 (464)
T ss_pred cccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhC---CCc-EEEEechhhcCCCC---CCCCcC-CccccCce-EEEE
Confidence 999999999999999999999999999999999976 444 666 455431 134331 11112322 4566
Q ss_pred eccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhcc
Q psy2375 717 KNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEK 795 (929)
Q Consensus 717 ~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~ 795 (929)
++| .|++||++|.++.+|+ ||+.|+++ ||+++|||++|++|||.+.+ .+.+++
T Consensus 338 r~G------~DvtIva~G~~v~~Al~Aa~~L~~~-GI~~~VIdl~tlkPlD~~~i-------------------~~sv~k 391 (464)
T PRK11892 338 REG------KDVTIVSFSIGMTYALKAAEELAKE-GIDAEVIDLRTIRPMDTETI-------------------VESVKK 391 (464)
T ss_pred EcC------CCEEEEEccHHHHHHHHHHHHHHhc-CCCEEEEECCCCCcCCHHHH-------------------HHHHHh
Confidence 664 6999999999999999 99999988 99999999999999998653 445556
Q ss_pred CCCcEEEEecccc--hhHHHHHhhccCC------CcEEEEec-CcccccCChhhHHhhhcc-eeheeccccccC
Q psy2375 796 SIGPIIVATDYMR--LFAEQVRAFIPKG------RIYKVLGT-DGFGCSDTRKKLRDFFEN-IIHMKKIIKVPN 859 (929)
Q Consensus 796 ~~~~vVtved~~~--~~~~~i~~~l~~~------~~~~~lG~-d~Fg~sgs~~~L~~~fgl-dae~Iv~~al~~ 859 (929)
+ +.+|++|||+. |+++.|++++.+. .++.++|. |.|+. +..+++++++ +++.|++++..+
T Consensus 392 t-~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~~Iv~av~~~ 461 (464)
T PRK11892 392 T-NRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVAEVVEAVKAV 461 (464)
T ss_pred c-CeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHHHHHHHHHHH
Confidence 6 78999999986 7898888877541 47889999 77764 8889999998 999999877643
No 34
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=9.2e-38 Score=324.11 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=171.9
Q ss_pred CCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCC
Q psy2375 103 GGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLM 182 (929)
Q Consensus 103 gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~ 182 (929)
+||+|+++|+++++.+||. .|+. ++|+||+|+||++ |+.+++.|+ +++|++||+. ++|++||.|.+.
T Consensus 1 ~gh~g~~ls~~~i~~~L~~-~~~~----~rDr~ils~gH~~---~~~~~~~g~--~~~l~~~~~~---~~~~g~p~~~~~ 67 (195)
T cd02007 1 GGHLGSNLGVVELTLALHY-VFDS----PKDKIIWDVGHQA---YPHKILTGR--RDQFHTLRQY---GGLSGFTKRSES 67 (195)
T ss_pred CCCCCcchhHHHHHHHHHH-hcCC----CCCeEEEecccHH---HHHHHHHCC--HHHHhhhhcC---CCCCCCCcCCCC
Confidence 5999999999999999985 4553 4899999999999 566677887 6899999997 459999998776
Q ss_pred CCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 183 PKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 183 p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
|. ++++|||+|+|+++|+|+|.+.|+ ++.+++|||++||||++||++|||+++|+++ ++||++|||+|.++
T Consensus 68 ~~-~~~~~G~lG~gl~~A~G~Ala~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~~~li~vvdnN~~~ 138 (195)
T cd02007 68 EY-DAFGTGHSSTSISAALGMAVARDL-------KGKKRKVIAVIGDGALTGGMAFEALNNAGYL-KSNMIVILNDNEMS 138 (195)
T ss_pred CC-ceECCCchhhhHHHHHHHHHHHHH-------hCCCCeEEEEEcccccccChHHHHHHHHHHh-CCCEEEEEECCCcc
Confidence 74 789999999999999999987775 2357899999999999999999999999999 67899999999999
Q ss_pred ccccccccccchHHHHHHHhhCCceEEE-EecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 263 LDGPVRGNSKIIQELEAHFYGVGWNVIK-VIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 263 idg~v~~~~~~~~~l~~~f~~~Gw~vi~-v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
+++++. ++..+|+++||+++. |
T Consensus 139 ~~~~~~-------~~~~~~~a~G~~~~~~v-------------------------------------------------- 161 (195)
T cd02007 139 ISPNVG-------TPGNLFEELGFRYIGPV-------------------------------------------------- 161 (195)
T ss_pred cCCCCC-------CHHHHHHhcCCCccceE--------------------------------------------------
Confidence 999886 367789999999886 4
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCC
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~ 395 (929)
||||+++|++|+++|++. ++|++|+++|+||+|+
T Consensus 162 -------------------dG~d~~~l~~a~~~a~~~-~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 162 -------------------DGHNIEALIKVLKEVKDL-KGPVLLHVVTKKGKGY 195 (195)
T ss_pred -------------------CCCCHHHHHHHHHHHHhC-CCCEEEEEEEecccCc
Confidence 899999999999999874 7899999999999996
No 35
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-37 Score=346.40 Aligned_cols=300 Identities=15% Similarity=0.117 Sum_probs=229.3
Q ss_pred CcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEecc
Q psy2375 491 RKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEG 569 (929)
Q Consensus 491 ~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~G 569 (929)
+++++|++|+++|.+++++ +++||++++|.+.. | +.|. .+..+++.| |+||||+|
T Consensus 33 ~~~~~~~~~~~~L~~~~~~---d~~iv~l~~D~~~~-G--~~~~------------------~~~~f~~~fgP~R~id~G 88 (355)
T PTZ00182 33 VKMNVREAINSALDEELAR---DPKVFVLGEDVAQY-G--GVYK------------------CTKGLLDKYGPDRVFDTP 88 (355)
T ss_pred cchHHHHHHHHHHHHHHhh---CCCEEEEeCCcccc-C--Cchh------------------hhHHHHHHhCCCceeecC
Confidence 4678999999999999887 55679999998621 1 1110 112467888 99999999
Q ss_pred ccchhhHHHHHHHHHHHhccCCCceEEEEe-ehhhHHHhHHHHHHHhhhhcC------CcEEEEeecCCeeecCCCCCC-
Q psy2375 570 INEAGGMGSWIAAATSYSTSNCIMIPFFTF-YSMFGLQRIGDLAWLAGDIRA------RGFLIGGTSGRTTINGEGLQH- 641 (929)
Q Consensus 570 IaE~~~~~~~iAag~g~A~~G~~~iPf~~~-ys~F~~qR~~d~i~~~~~~~~------~~v~i~~t~~~~~~g~dG~tH- 641 (929)
|+||+|+++ |+ |||+.| ++||+.+ |+.|. +|++||++..++++. .++.+++++.+..++++|+||
T Consensus 89 IaEq~~vg~--Aa--GlA~~G--~~Pvv~~~fa~Fl-~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs 161 (355)
T PTZ00182 89 ITEQGFAGF--AI--GAAMNG--LRPIAEFMFADFI-FPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHS 161 (355)
T ss_pred ccHHHHHHH--HH--HHHhCC--CEEEEEechhhHH-HHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCccc
Confidence 999999887 55 488888 9999976 79995 999999998776652 345555666666788999999
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC--CCCCCCCCCCcc-cccccccceEEEec
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM--NENYSHPGLKKG-QEKGIIKGLYLLKN 718 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~--~e~~~~p~~~~~-~~~~i~~G~y~l~~ 718 (929)
|..+ +++|++||++|+.|+|+.|++.+++++++. ++ |+||+.++. ..+ .+..+.+ ....+.+ ..++++
T Consensus 162 ~~~e--a~lr~iPn~~V~~Psd~~e~~~~l~~a~~~---~~-P~~i~~p~~l~r~~--~~~~~~~~~~~~~Gk-~~vl~~ 232 (355)
T PTZ00182 162 QSFE--AYFAHVPGLKVVAPSDPEDAKGLLKAAIRD---PN-PVVFFEPKLLYRES--VEVVPEADYTLPLGK-AKVVRE 232 (355)
T ss_pred chHH--HHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CC-cEEEEeehHHhCCC--CCCCCcccccccCCc-ceEecC
Confidence 7665 999999999999999999999999999986 33 377764432 111 1222221 1122323 345555
Q ss_pred cCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCC
Q psy2375 719 HNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSI 797 (929)
Q Consensus 719 g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~ 797 (929)
|.|++|+++|+++.+|+ |++.|+++ ||+++||++++++|||.+.+ .+.++++
T Consensus 233 ------G~di~Iia~Gs~~~~aleAa~~L~~~-Gi~v~vI~~~~l~Pld~e~i-------------------~~~~~~~- 285 (355)
T PTZ00182 233 ------GKDVTIVGYGSQVHVALKAAEELAKE-GISCEVIDLRSLRPWDRETI-------------------VKSVKKT- 285 (355)
T ss_pred ------CCCEEEEEeCHHHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCHHHH-------------------HHHHhcC-
Confidence 46999999999999999 99999987 99999999999999988643 4455666
Q ss_pred CcEEEEecccc--hhHHHHHhhccCC------CcEEEEec-CcccccCChhhHHhhhcceeheeccccccC
Q psy2375 798 GPIIVATDYMR--LFAEQVRAFIPKG------RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPN 859 (929)
Q Consensus 798 ~~vVtved~~~--~~~~~i~~~l~~~------~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~ 859 (929)
+.||++|||.. |+++.|.+++.+. .++.++|+ |.|+..... |.+.+.++++.|++++..+
T Consensus 286 ~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 286 GRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKEKVVEAAKRV 354 (355)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHHHHHHHHHHh
Confidence 68999999986 8999988887641 47889999 778754333 8889999999999877653
No 36
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.97 E-value=3.1e-28 Score=297.74 Aligned_cols=462 Identities=15% Similarity=0.139 Sum_probs=284.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCcc-CCcccHHHHHHHHHcCCC--eEEEEEecCCCcccccc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEM-DEPESISEISMAAREKLD--NLIMIVNCNLQRLDGPV 267 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~-~eg~~~eAl~~A~~~~L~--nli~vvn~N~~~idg~v 267 (929)
+++|...+.|+|.|+|.++.. .+..+.....++||+|||++ .+|.++|+||+|+.++|+ -+||||.+|++.++.|.
T Consensus 314 Shleav~Pva~G~A~A~q~~~-~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~ 392 (924)
T PRK09404 314 SHLEIVNPVVEGSVRARQDRR-GDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSP 392 (924)
T ss_pred cccccccCeehhHHHHHHHhc-CCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCH
Confidence 678999999999999999741 11012223688999999998 799999999999999996 59999999999999997
Q ss_pred cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHH
Q psy2375 268 RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMI 347 (929)
Q Consensus 268 ~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v 347 (929)
... .....+.++.+++|..++.|
T Consensus 393 ~~~-~s~~~~sd~Ak~~giP~~~V-------------------------------------------------------- 415 (924)
T PRK09404 393 PDD-RSTPYCTDVAKMVQAPIFHV-------------------------------------------------------- 415 (924)
T ss_pred HHh-ccchhHHHHHeecCCcEEEE--------------------------------------------------------
Confidence 653 33556788999999999998
Q ss_pred hhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhh--
Q psy2375 348 EEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDF-- 422 (929)
Q Consensus 348 ~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~-- 422 (929)
||.|+++|+.|.+.|++. .++|+||.+.|.+-+||... +... . -++++++.++++
T Consensus 416 -------------DG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~--D~p~--y---r~p~ey~~~~~~~d 475 (924)
T PRK09404 416 -------------NGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEG--DEPS--F---TQPLMYKKIKKHPT 475 (924)
T ss_pred -------------cCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCC--CCCc--C---CCHHHHHHHHhcCC
Confidence 899999999999998773 37899999999999999752 2221 1 244555555432
Q ss_pred --------c---CCCCCCcccccCCCCCCCCCcHHH-HHHHHHHHHhCCCCC-----ccccc-------------cc-c-
Q psy2375 423 --------L---KLPIPDSELSLVPFYKPSKNSPEI-QYLKNCRKKLGGYLP-----KRRQK-------------SD-E- 470 (929)
Q Consensus 423 --------~---~~p~~d~~~~~~~f~~~~~~~~~~-~~~~~~~~~l~g~~p-----~~~~~-------------~~-~- 470 (929)
+ |+ ++++++++.. .++ +.+.+..+....+.| ..|.. .. .
T Consensus 476 pi~~~~~~Li~~G~-lt~~e~~~i~--------~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~ 546 (924)
T PRK09404 476 TRELYADKLVAEGV-ITEEEADEMV--------NEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLER 546 (924)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHH--------HHHHHHHHHHHHHHHhcCcccccccccccccccccccccCCCCCHHH
Confidence 1 11 1222111000 000 001100000000001 01100 00 0
Q ss_pred -------cccCCC-------h-HHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCC-cCccccch
Q psy2375 471 -------KLLIPP-------L-EAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRT-FGMEGLFR 534 (929)
Q Consensus 471 -------~l~~P~-------~-~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s-~gl~~~f~ 534 (929)
-..+|+ + ..|..-++...+++.+.+-+|-..++..++.+ +++|+....|.++. |.= |
T Consensus 547 l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~---~~~v~l~GeDv~rgtFsh----R 619 (924)
T PRK09404 547 LKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDE---GYPVRLSGQDSGRGTFSH----R 619 (924)
T ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhC---CCCEEEEeeeCCCCcccc----c
Confidence 001222 1 11111111111334577888888888888887 66678889999873 210 1
Q ss_pred hcccccc-cCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCce--EEE-EeehhhH--HHhH
Q psy2375 535 QIGIFSQ-VGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMI--PFF-TFYSMFG--LQRI 608 (929)
Q Consensus 535 ~~gi~~~-~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~i--Pf~-~~ys~F~--~qR~ 608 (929)
-.-+++. .|..|.|.. ++ ..+..+.|++|++|+|.+.+++ +.|||+.| +. |++ +.|.-|. .|-+
T Consensus 620 Havl~dq~~gg~~~~~~-~l---~~~~g~~rV~nsplsE~~~~G~----~~G~a~~g--~~~l~i~E~qfgDF~~~AQ~~ 689 (924)
T PRK09404 620 HAVLHDQKTGETYIPLN-HL---SEGQASFEVYDSPLSEEAVLGF----EYGYSTAE--PNTLVIWEAQFGDFANGAQVV 689 (924)
T ss_pred chhccccCCCCEecccc-ch---hhhcCCceEecCcchHHHHHHH----HHHHHhcC--CCCceEEEEeccccccchHHH
Confidence 1222222 355666654 22 2233479999999999996654 67799998 64 455 5666665 4677
Q ss_pred HHHHHHhh----hhcCCcEEEEeecCCeeecCCCCCCCC--hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHH-hhccCC
Q psy2375 609 GDLAWLAG----DIRARGFLIGGTSGRTTINGEGLQHED--GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGL-HCMISN 681 (929)
Q Consensus 609 ~d~i~~~~----~~~~~~v~i~~t~~~~~~g~dG~tHq~--~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al-~~~~g~ 681 (929)
.||+-..+ .++. ++.+...|| .++.|+.|++ +|....+...|||+|+.|++++++.++|+.++ +. . +
T Consensus 690 ~Dq~i~~~~~k~~~~s-glv~~~p~G---~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~-~-r 763 (924)
T PRK09404 690 IDQFISSGEQKWGRLS-GLVMLLPHG---YEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRP-F-R 763 (924)
T ss_pred HHHHHHHHHHHhcCcc-CeEEEecCc---CCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhC-C-C
Confidence 88864433 2333 455555665 3455777755 44444445568999999999999999999865 44 1 2
Q ss_pred CceEEEEEecCCCCCCCCCCCcccccccccceE--EEeccCCcCCCCcE--EEEEeChhHHHHH-HHHHHhccCCCceEE
Q psy2375 682 QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLY--LLKNHNNEKSKLKV--QLIGSGAILREIL-ASKILLQEWDIDSAV 756 (929)
Q Consensus 682 ~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y--~l~~g~~~~~g~dv--~Lia~G~~v~~al-AAe~L~~~~GI~a~V 756 (929)
+|.|++. ++. -+-+|.-. .....+..|.| ++.++. .+++.|| +||+||.++++++ |++.+.. .++.|
T Consensus 764 ~Pvv~~~-pK~--L~r~~~~~-s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~---~~v~i 835 (924)
T PRK09404 764 KPLVVMT-PKS--LLRHPLAV-SSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRGI---DDVAI 835 (924)
T ss_pred CCEEEec-cHH--HhCCCCCC-CCHHHcCCCCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCCC---CCEEE
Confidence 4555543 221 01011100 00111112212 222211 0134589 7999999999999 9886532 49999
Q ss_pred EEcccccccccchh
Q psy2375 757 WSATSFTLLARDGQ 770 (929)
Q Consensus 757 vsv~s~~pLd~~~~ 770 (929)
|++.++.|||.+.+
T Consensus 836 i~le~L~P~~~~~i 849 (924)
T PRK09404 836 VRIEQLYPFPHEEL 849 (924)
T ss_pred EEeeeeCCCCHHHH
Confidence 99999999998754
No 37
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.96 E-value=1.7e-27 Score=289.79 Aligned_cols=472 Identities=13% Similarity=0.087 Sum_probs=284.3
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCcc-CCcccHHHHHHHHHcCCCe--EEEEEecCCCccc
Q psy2375 188 FPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEM-DEPESISEISMAAREKLDN--LIMIVNCNLQRLD 264 (929)
Q Consensus 188 f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~-~eg~~~eAl~~A~~~~L~n--li~vvn~N~~~id 264 (929)
+..+|++...+.|+|.|+|.++... .+....+..++||+|||++ .+|.++|+||+|+.++|+- .||||.||++.++
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~-~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~t 390 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLN-DSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFT 390 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcC-CcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEE
Confidence 3457899999999999999987421 0122346788999999997 7999999999999999983 4999999999999
Q ss_pred ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHH
Q psy2375 265 GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLL 344 (929)
Q Consensus 265 g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~ 344 (929)
.|.... .....+.++.+++|..++.|
T Consensus 391 T~~~~~-~s~~~~sd~Ak~ygiP~~~V----------------------------------------------------- 416 (929)
T TIGR00239 391 TNPLDA-RSTPYCSDLAKMIQAPIFHV----------------------------------------------------- 416 (929)
T ss_pred EcHHHh-cCccCHHHHheecCCCEEEE-----------------------------------------------------
Confidence 986542 23456788899999999998
Q ss_pred HHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEeeecccCCccCCCCCccccccc-----CCCHHHH
Q psy2375 345 KMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEARNTAHNIK-----KIDHQGI 416 (929)
Q Consensus 345 ~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~-----~l~~~~~ 416 (929)
||.|+++|+.|.+.|++. .++|++|.+.|.+-+||..+ +.....+.. +-.++-+
T Consensus 417 ----------------DG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~--D~p~~yrp~~~~~i~~~~dPi 478 (929)
T TIGR00239 417 ----------------NADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEA--DEPSATQPLMYQKIKKHPTPR 478 (929)
T ss_pred ----------------CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCC--CCCccCCHHHHHHHHhCCCHH
Confidence 899999999999998763 36899999999999999763 222211100 0000112
Q ss_pred HHHHhhc---CCCCCCcccccCCCCCCCCCcHHH-HHHHHHHHHhCCC---CCc--ccccc-cc----------------
Q psy2375 417 KSIRDFL---KLPIPDSELSLVPFYKPSKNSPEI-QYLKNCRKKLGGY---LPK--RRQKS-DE---------------- 470 (929)
Q Consensus 417 ~~~r~~~---~~p~~d~~~~~~~f~~~~~~~~~~-~~~~~~~~~l~g~---~p~--~~~~~-~~---------------- 470 (929)
..+++++ |+ ++++++++.. .++ +.+.+..+..... .+. .|... ..
T Consensus 479 ~~~~~~Li~~Gv-~te~e~~~i~--------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~ 549 (929)
T TIGR00239 479 KVYADKLVSEGV-ATEEDVTEMV--------NLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQ 549 (929)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHH--------HHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHH
Confidence 2222222 11 2222211000 000 0000000000000 000 00000 00
Q ss_pred -----cccCCC-------h-HHHhhh-hccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhc
Q psy2375 471 -----KLLIPP-------L-EAFKKI-LEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQI 536 (929)
Q Consensus 471 -----~l~~P~-------~-~~f~~~-~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~ 536 (929)
-..+|+ + ..+..- .+...+++.+++.+|...+|..++.+ +++|+....|.++.+-- -|-.
T Consensus 550 ~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~---~~~V~l~GeDv~rGtFs---hRHa 623 (929)
T TIGR00239 550 ELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDD---GIPVRLSGEDSERGTFF---QRHA 623 (929)
T ss_pred HHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc---CCCEEEEeeeCCCcccc---cccc
Confidence 001122 1 112111 11111345578899999999998888 66678889998872100 0111
Q ss_pred cccc-ccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEE--E-EeehhhH--HHhHHH
Q psy2375 537 GIFS-QVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPF--F-TFYSMFG--LQRIGD 610 (929)
Q Consensus 537 gi~~-~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf--~-~~ys~F~--~qR~~d 610 (929)
-+++ ..|..|.|.. ++ ..+..+.|++|++|+|.+.+++ +.|||+.| +.|+ + +.|.-|. .|-+.|
T Consensus 624 vl~dq~~g~~~~~~~-~l---~~~~g~~rV~nsplSE~a~~G~----~~G~a~~g--~~~l~i~E~qfgDF~~~AQv~~D 693 (929)
T TIGR00239 624 VLHDQSNGSTYTPLQ-HL---HNGQGAFRVWNSVLSEESVLGF----EYGYATTS--PRTLVIWEAQFGDFANGAQVVID 693 (929)
T ss_pred cccccccCceeeccc-ch---hhhcCCeeEEcCCccHHHHHHH----HHhHHhcC--CCCceEEEEeccchhcchHHHHH
Confidence 2222 1456677764 22 2233478999999999996654 67799998 6664 3 5666665 477889
Q ss_pred HHHHhh----hhcCCcEEEEeecCCeeecCCCCCCCC--hhhHHHHhcCCCcEEEccCCHHHHHHHHH-HHHhhccCCCc
Q psy2375 611 LAWLAG----DIRARGFLIGGTSGRTTINGEGLQHED--GHSHVLASTIPNCIPYDPTFAHEVAIIIH-HGLHCMISNQE 683 (929)
Q Consensus 611 ~i~~~~----~~~~~~v~i~~t~~~~~~g~dG~tHq~--~ed~~l~r~iPnl~v~~Pada~E~~~~l~-~al~~~~g~~~ 683 (929)
|+-..+ .++. ++.+...+| .++.|+-|++ +|-...+.++||++|+.|++++++.++|+ ++++.. ++|
T Consensus 694 q~i~~~~~K~~~~s-glv~~~p~G---~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~--~~P 767 (929)
T TIGR00239 694 QFISSGEQKWGQMS-GLVMLLPHG---YEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGM--RRP 767 (929)
T ss_pred HHHHHHHHHhcCcc-CeEEEecCc---CCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCC--CCC
Confidence 864432 2343 355555665 3456776755 55555558999999999999999999999 688752 345
Q ss_pred eEEEEEecCCCCCCCCCCCcccccccccceEEEeccC-----C--cCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceE
Q psy2375 684 DVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHN-----N--EKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSA 755 (929)
Q Consensus 684 ~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~-----~--~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~ 755 (929)
.|++. ++. -+.+|.-- +..+.+..|.|...-+. . .+++-+.+|+++| ++..++ | +.++++ |+++.
T Consensus 768 vi~~~-~K~--L~r~~~a~-S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg-~v~~~l~~-~~~~~~-~~~v~ 840 (929)
T TIGR00239 768 LVVMS-PKS--LLRHPLAV-SSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLVLCSG-KVYYDLHE-QRRKNG-QKDVA 840 (929)
T ss_pred EEEec-cHh--hhcCcccc-CccccCCCCCcccccccccccccccCccCCcEEEEECc-hHHHHHHH-HHHhcC-CCCEE
Confidence 55542 211 01011100 00011222223211110 0 0112244555555 888889 7 667777 99999
Q ss_pred EEEcccccccccchh
Q psy2375 756 VWSATSFTLLARDGQ 770 (929)
Q Consensus 756 Vvsv~s~~pLd~~~~ 770 (929)
||++.++.|||.+.+
T Consensus 841 iirle~L~Pf~~~~i 855 (929)
T TIGR00239 841 IVRIEQLYPFPHKAV 855 (929)
T ss_pred EEEeeeeCCCCHHHH
Confidence 999999999998754
No 38
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=99.95 E-value=3.7e-27 Score=250.65 Aligned_cols=295 Identities=15% Similarity=0.151 Sum_probs=192.8
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccc
Q psy2375 493 ISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINE 572 (929)
Q Consensus 493 ~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE 572 (929)
+++++|..++|.+.++. +++|+++..|.+.. +|.|+.+. ++ +++..+.|+||++|+|
T Consensus 2 ~~~~eAi~~Am~~eM~r---D~~V~v~GEDVg~~---GGvf~~T~--------------GL---~~kfG~~RV~DTPiaE 58 (324)
T COG0022 2 MTMIEAINEAMDEEMER---DERVVVLGEDVGVY---GGVFRVTK--------------GL---QEKFGEERVIDTPIAE 58 (324)
T ss_pred ccHHHHHHHHHHHHHhc---CCCEEEEccccccc---CChhhhch--------------hH---HHHhCccceecCccch
Confidence 56888999999876665 55679999998543 33444332 32 3333567999999999
Q ss_pred hhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHH-h--------hhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 573 AGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWL-A--------GDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 573 ~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~-~--------~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
++ ++++|.|+|+.| ++|++ +.|.-|. .-+.||+-. + +.+..|-|+..-..+++ .|+.||
T Consensus 59 ~g----i~G~avGaA~~G--lrPivEiqf~dF~-~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~----~~~~~H 127 (324)
T COG0022 59 SG----IAGIAVGAALTG--LRPIVEIQFADFI-YPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGI----GGGAQH 127 (324)
T ss_pred hh----hHHHHHHHHHcC--CcceEEEEecchh-HHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCC----Cchhhc
Confidence 99 445577899998 99988 5666774 445555532 2 23455544432222322 244444
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCc
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNE 722 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~ 722 (929)
+..--+++.++||++|+.|+++|+++++|..|+++ |+|.+|+.-.+. +......++.+.|.+.-|++.
T Consensus 128 Sqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAIrd---~dPViflE~k~l---------Y~~~~~eVP~~~Y~iPlGkA~ 195 (324)
T COG0022 128 SQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAIRD---PDPVIFLEHKRL---------YRSFKGEVPEEDYTIPLGKAK 195 (324)
T ss_pred cCCHHHHHhcCCCceEEecCChHHHHHHHHHHhcC---CCCEEEEecHHH---------hcccccCCCCCCcccccccee
Confidence 55555899999999999999999999999999998 778777753221 111111222233333333322
Q ss_pred --CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCc
Q psy2375 723 --KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGP 799 (929)
Q Consensus 723 --~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~ 799 (929)
++|+||||+++|.||+.++ ||+.|+++ ||+++|||++|+.|||.+.+ ++++ +++ +.
T Consensus 196 i~reG~DvTivtyg~mv~~al~AAe~l~~~-Gis~EVIDLRTl~PlD~etI------------------i~Sv-kKT-gR 254 (324)
T COG0022 196 IVREGSDVTIVTYGAMVHTALEAAEELEKE-GISAEVIDLRTLSPLDKETI------------------IASV-KKT-GR 254 (324)
T ss_pred eEecCCceEEEEechHHHHHHHHHHHHhhc-CCCeEEEeccccCccCHHHH------------------HHHH-Hhh-Cc
Confidence 3467999999999999999 99999999 99999999999999998764 4455 444 67
Q ss_pred EEEEecccc--hhHHHHHhhccC------CCcEEEEec-Cccc-ccCChhhHHhhhcceeheeccccc
Q psy2375 800 IIVATDYMR--LFAEQVRAFIPK------GRIYKVLGT-DGFG-CSDTRKKLRDFFENIIHMKKIIKV 857 (929)
Q Consensus 800 vVtved~~~--~~~~~i~~~l~~------~~~~~~lG~-d~Fg-~sgs~~~L~~~fgldae~Iv~~al 857 (929)
+|.|+|..+ +++.-|...+.+ ..|..++.- |.-- .+.. |-+.+=.+++.|++++.
T Consensus 255 ~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~---lE~~~lp~~~~I~~av~ 319 (324)
T COG0022 255 LVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAA---LEKAYLPNPERIVAAVK 319 (324)
T ss_pred EEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchh---HHhhhCCCHHHHHHHHH
Confidence 888887765 666555443332 145555433 5322 3322 33333345555555444
No 39
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.95 E-value=2.7e-27 Score=247.84 Aligned_cols=188 Identities=22% Similarity=0.290 Sum_probs=155.8
Q ss_pred CCCchHHHHHHHHHcCC-------CC--HHHHh-hhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHH
Q psy2375 139 QGHSAPGVYARAFLEGR-------LT--EEQMI-NFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLK 208 (929)
Q Consensus 139 ~GH~ap~~Ya~~~l~Gr-------~~--~~~l~-~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~k 208 (929)
.||.+|++||.++|+|. ++ ++.|. .|||++..+|++|||.+ ..|+ ...++|++|+|+++|+|+|
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpG-i~~~~G~LG~gLs~A~G~a---- 75 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPG-SIHEGGELGYSLSHAYGAV---- 75 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCC-eeecccchhhHHHHHHHhh----
Confidence 69999999999999994 23 23465 57887655679999987 5686 7999999999999999998
Q ss_pred HHhhccccCCCCcEEEEEEcCCccCCccc---HHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCC
Q psy2375 209 YLHARKITNTINRKIWILCGDGEMDEPES---ISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVG 285 (929)
Q Consensus 209 yl~~r~~~~~~~~~v~~~~GDGe~~eg~~---~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~G 285 (929)
+ ++.+.+|+||+||||++||.. |++.+++...+|+||+.||++|+++|++|+.......++|.++|++||
T Consensus 76 -~------d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG 148 (227)
T cd02011 76 -F------DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYG 148 (227)
T ss_pred -h------cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCC
Confidence 3 446789999999999999995 999999999999999999999999999999853233689999999999
Q ss_pred ceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcH
Q psy2375 286 WNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDL 365 (929)
Q Consensus 286 w~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~ 365 (929)
|+++.| ||||+
T Consensus 149 ~~~~~V---------------------------------------------------------------------DG~D~ 159 (227)
T cd02011 149 YEPYFV---------------------------------------------------------------------EGDDP 159 (227)
T ss_pred CceEEE---------------------------------------------------------------------CCCCH
Confidence 999998 78888
Q ss_pred HHHHHHHHHHHh---------------C--CCCCe--EEEEeeecccCCccC-----CCCCcccccc
Q psy2375 366 RKIYSAFKMAQK---------------N--KDKPT--VLLIKSIKGYGLGRF-----GEARNTAHNI 408 (929)
Q Consensus 366 ~~v~~a~~~a~~---------------~--~~~P~--vI~~~T~KG~G~~~~-----~e~~~~~H~~ 408 (929)
.++++++++|++ . ..+|. +|+++|.|||+-+.. .|+...+||+
T Consensus 160 ~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p~~~~~~~~e~~~~~hq~ 226 (227)
T cd02011 160 ETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGPKEVDGKKLEGSFRSHQV 226 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCCcccCCEEecCCcccCCC
Confidence 888877776543 1 13453 899999999987653 4566677776
No 40
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.93 E-value=2.5e-25 Score=223.38 Aligned_cols=155 Identities=21% Similarity=0.306 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHH
Q psy2375 498 AYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMG 577 (929)
Q Consensus 498 af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~ 577 (929)
+|+++|.+++++ +++++++++|++.+.++.+ +++.+|+|++|+||+|+++++
T Consensus 2 ~~~~~l~~~~~~---~~~~v~~~~Dl~~~~~~~~-------------------------~~~~~p~r~i~~gIaE~~~vg 53 (156)
T cd07033 2 AFGEALLELAKK---DPRIVALSADLGGSTGLDK-------------------------FAKKFPDRFIDVGIAEQNMVG 53 (156)
T ss_pred hHHHHHHHHHhh---CCCEEEEECCCCCCCCcHH-------------------------HHHhCCCCeEEeChhHHHHHH
Confidence 678899988887 4556999999987655543 446689999999999999888
Q ss_pred HHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcE
Q psy2375 578 SWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCI 657 (929)
Q Consensus 578 ~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~ 657 (929)
+ |+ |+|++| ++||+.+| .|.++|++||++..++++..+++++++++++..+++|+|||+.+|++++|++||++
T Consensus 54 ~--A~--GlA~~G--~~pi~~~~-~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~ 126 (156)
T cd07033 54 I--AA--GLALHG--LKPFVSTF-SFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMT 126 (156)
T ss_pred H--HH--HHHHCC--CeEEEEEC-HHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCE
Confidence 6 44 588888 99999999 55589999999966666667899999999999899999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 658 PYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 658 v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
|+.|+|++|++.+++++++. ++ |+|+|+++
T Consensus 127 v~~Ps~~~~~~~ll~~a~~~---~~-P~~irl~~ 156 (156)
T cd07033 127 VLRPADANETAAALEAALEY---DG-PVYIRLPR 156 (156)
T ss_pred EEecCCHHHHHHHHHHHHhC---CC-CEEEEeeC
Confidence 99999999999999999988 33 59999874
No 41
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.92 E-value=6e-25 Score=225.29 Aligned_cols=170 Identities=19% Similarity=0.118 Sum_probs=135.2
Q ss_pred CcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccc
Q psy2375 491 RKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGI 570 (929)
Q Consensus 491 ~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GI 570 (929)
+++++++||+++|.++++. +++||++++|+++++++..+- ..+ ...|+|++|+||
T Consensus 1 ~k~~~~~a~~~~l~~~~~~---d~~vv~~~~D~~~~~~~~~~~---------------------~~~-~~~~~r~i~~gI 55 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEE---DPRVVVIGADLGGGTFGVTFG---------------------LAF-PFGPGRFINTGI 55 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHH---TTTEEEEESSTHHHHTSTTTT---------------------HHB-HHTTTTEEE--S
T ss_pred CCccHHHHHHHHHHHHHhh---CCCEEEEECCcCcchhhhhhh---------------------ccc-cCCCceEEecCc
Confidence 3679999999999999998 666899999999765443210 011 223779999999
Q ss_pred cchhhHHHHHHHHHHHhccCCC-ceEEEEeehhhHH---HhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhh
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCI-MIPFFTFYSMFGL---QRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHS 646 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~-~iPf~~~ys~F~~---qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed 646 (929)
+|++++++ |+ |+|+.| + ++||+.+|+.|.. .|+.+|++....+...++. ++++++++.+++|+|||+.+|
T Consensus 56 aE~~~vg~--a~--GlA~~G-~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d 129 (178)
T PF02779_consen 56 AEQNMVGM--AA--GLALAG-GLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIED 129 (178)
T ss_dssp -HHHHHHH--HH--HHHHHS-SSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSH
T ss_pred chhhccce--ee--eeeecc-cccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccccc
Confidence 99998886 54 588887 4 8899999999977 6999999877767777888 788888888999999999999
Q ss_pred HHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCC
Q psy2375 647 HVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMN 693 (929)
Q Consensus 647 ~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~ 693 (929)
+++++++||++|++|+|+.|++.++++++++. .+ .|+|+|+++.+
T Consensus 130 ~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~~-~~-~P~~ir~~r~~ 174 (178)
T PF02779_consen 130 EAILRSIPGMKVVVPSDPAEAKGLLRAAIRRE-SD-GPVYIREPRGL 174 (178)
T ss_dssp HHHHHTSTTEEEEE-SSHHHHHHHHHHHHHSS-SS-SEEEEEEESSE
T ss_pred ccccccccccccccCCCHHHHHHHHHHHHHhC-CC-CeEEEEeeHHh
Confidence 99999999999999999999999999999941 02 35999999864
No 42
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.90 E-value=2.7e-23 Score=210.84 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=131.6
Q ss_pred cHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccch
Q psy2375 494 STTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEA 573 (929)
Q Consensus 494 str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~ 573 (929)
+++++++++|.+++++. +++|+.+++|++.++++.. .+.|. ..++ .+++|++|+||+|+
T Consensus 1 ~~~~~~~~~l~~~~~~~--~~~v~~~~~D~~~~~~~~~----~~~~~--------~~~~-------~~~~R~~~~gIaE~ 59 (168)
T smart00861 1 ATRKAFGEALAELAERD--PERVVVSGADVGGSTGLDR----GGVFP--------DTKG-------LGPGRVIDTGIAEQ 59 (168)
T ss_pred CHHHHHHHHHHHHHhhC--CCcEEEEehhhCcCcCCCc----CCccC--------CCCC-------CCCccEEEcCcCHH
Confidence 47899999999998861 3357999999988766551 12121 1111 15788999999999
Q ss_pred hhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeec-CCeeecCCCCCCCChhhHHHHhc
Q psy2375 574 GGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTS-GRTTINGEGLQHEDGHSHVLAST 652 (929)
Q Consensus 574 ~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~-~~~~~g~dG~tHq~~ed~~l~r~ 652 (929)
+++++ |+ |+|++| ++||+.+|++| +.|+.||++.+++++ +.. ++.++ ++...+++|+|||+.++++++++
T Consensus 60 ~~vg~--a~--GlA~~G--~~pi~~~~~~f-~~~a~~~~~~~~~~~-~~~-~v~~~~~g~~~g~~G~tH~~~~~~~~~~~ 130 (168)
T smart00861 60 AMVGF--AA--GLALAG--LRPVVAIFFTF-FDRAKDQIRSDGAMG-RVP-VVVRHDSGGGVGEDGPTHHSQEDEALLRA 130 (168)
T ss_pred HHHHH--HH--HHHHcC--CCcEEEeeHHH-HHHHHHHHHHhCccc-CCC-EEEEecCccccCCCCccccchhHHHHHhc
Confidence 98886 44 588898 79999999999 569999999988887 333 44455 57889999999999999999999
Q ss_pred CCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 653 IPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 653 iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
+|||+|+.|+|+.|++.+++.++++.. .++|+|+++.
T Consensus 131 iP~~~v~~P~~~~e~~~~l~~a~~~~~---~p~~i~~~~~ 167 (168)
T smart00861 131 IPGLKVVAPSDPAEAKGLLRAAIRRDD---GPPVIRLERK 167 (168)
T ss_pred CCCcEEEecCCHHHHHHHHHHHHhCCC---CCEEEEecCC
Confidence 999999999999999999999996522 2488898753
No 43
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.90 E-value=2.8e-23 Score=226.11 Aligned_cols=253 Identities=23% Similarity=0.292 Sum_probs=166.9
Q ss_pred CCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCc-EEEeCCCchHHHHHHHHHcCCC---------CHHHHhh-hcccc
Q psy2375 100 SSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGD-LIYIQGHSAPGVYARAFLEGRL---------TEEQMIN-FRQEV 168 (929)
Q Consensus 100 ~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd-~i~~~GH~ap~~Ya~~~l~Gr~---------~~~~l~~-fR~~~ 168 (929)
..+=||+|++.+...+|..+ |.+.+.- +.+. +|..+||++|++.|..||+|.+ +++.|.+ |||++
T Consensus 44 prllGHWGt~PGlnfiyahl-NrlI~~~---~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS 119 (379)
T PF09364_consen 44 PRLLGHWGTSPGLNFIYAHL-NRLIRKY---DLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFS 119 (379)
T ss_dssp SS--S-TTTHHHHHHHHHHH-HHHHHHH---TB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBT
T ss_pred cccccccCCCccHHHHHHHH-HHHHHhc---CCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCC
Confidence 34569999999999999988 5556531 1233 4667999999999999999973 5778888 58888
Q ss_pred CCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcc---cHHHHHHHH
Q psy2375 169 DGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPE---SISEISMAA 245 (929)
Q Consensus 169 ~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~---~~eAl~~A~ 245 (929)
..+|++||-.|. +|+ -....|.+|.+++.|.|+| | +..+..|.||+||||..+|. +|-+..+.-
T Consensus 120 ~PgGipSH~~p~-tPG-sIhEGGELGYaLshA~GA~-----~------DnPdliv~~vvGDGEaETGplA~sWh~~kfln 186 (379)
T PF09364_consen 120 FPGGIPSHVSPE-TPG-SIHEGGELGYALSHAFGAV-----F------DNPDLIVACVVGDGEAETGPLAASWHSNKFLN 186 (379)
T ss_dssp STTSB-SSS-TT-STT--S---SSTS-HHHHHHHHH-----T------T-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-
T ss_pred CCCCCccccCcC-CCC-ccCcCcchhhHHHHHhhcc-----c------CCCCeEEEEEecCCcccCCcccccccccceeC
Confidence 888999998885 697 5889999999999999999 4 66789999999999999994 344444333
Q ss_pred HcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccc
Q psy2375 246 REKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYR 325 (929)
Q Consensus 246 ~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~ 325 (929)
-..-..++.|+..|+++|++|+--...-.+||.+.|+|+||+++.|. | +.-..+.+.|..+.|
T Consensus 187 P~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Ve-g---------~dp~~~h~~ma~ald------- 249 (379)
T PF09364_consen 187 PATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVE-G---------DDPADMHQAMAAALD------- 249 (379)
T ss_dssp TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE-------------HHHHHHHHHHHHH-------
T ss_pred cccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEe-c---------CCHHHHHHHHHHHHH-------
Confidence 33334699999999999999986544446889999999999999983 1 111233444444444
Q ss_pred cCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCC--CCCe--EEEEeeecccCCccC---
Q psy2375 326 SKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNK--DKPT--VLLIKSIKGYGLGRF--- 398 (929)
Q Consensus 326 ~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~--~~P~--vI~~~T~KG~G~~~~--- 398 (929)
.-+++|.+.-++|+... .+|. +|+++|.|||+.+..
T Consensus 250 -------------------------------------~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG 292 (379)
T PF09364_consen 250 -------------------------------------WALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDG 292 (379)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-SEETT
T ss_pred -------------------------------------HHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCccccCC
Confidence 12344444444454321 2443 899999999998853
Q ss_pred --CCCCcccccccCCC-----HHHHHHHHhhcC
Q psy2375 399 --GEARNTAHNIKKID-----HQGIKSIRDFLK 424 (929)
Q Consensus 399 --~e~~~~~H~~~~l~-----~~~~~~~r~~~~ 424 (929)
.|+...+||+ ||. +++++.+.+++.
T Consensus 293 ~~iEGt~raHQV-Pl~~~~~~~~~l~~Le~Wl~ 324 (379)
T PF09364_consen 293 KPIEGTFRAHQV-PLPDVRTDPEHLRLLEDWLR 324 (379)
T ss_dssp EE-TTSGGGSS--SSTTTTTSHHHHHHHHHHHH
T ss_pred ccccCcceeeec-cccccCCCHHHHHHHHHHHH
Confidence 5899999999 664 567777766653
No 44
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.89 E-value=9e-23 Score=206.67 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCC-ceEeccccchhh
Q psy2375 497 YAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNG-QILQEGINEAGG 575 (929)
Q Consensus 497 ~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~g-R~~~~GIaE~~~ 575 (929)
++|+++|.+++++ +++||.+++|++.+-|... .+..+++.||+ |+||+||+|+++
T Consensus 1 ~~~~~~l~~~~~~---~~~vv~l~~D~~~~~g~~~---------------------~~~~~~~~~p~~R~~~~gIaEq~~ 56 (167)
T cd07036 1 QAINEALDEEMER---DPRVVVLGEDVGDYGGVFK---------------------VTKGLLDKFGPDRVIDTPIAEAGI 56 (167)
T ss_pred CHHHHHHHHHHhc---CCCEEEECcccccCCCcch---------------------HhHHHHHhCCCceEEeCCCcHHHH
Confidence 4788999999888 6667999999865322111 11246788999 999999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhc--------CCcEEEEeecCCeeecCCCCCCCChhh
Q psy2375 576 MGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIR--------ARGFLIGGTSGRTTINGEGLQHEDGHS 646 (929)
Q Consensus 576 ~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~--------~~~v~i~~t~~~~~~g~dG~tHq~~ed 646 (929)
+++ |+ |||+.| ++||+. +|+.|. +|++||++..+++. ..+|++++.+++ .+++|+|| +.++
T Consensus 57 vg~--Aa--GlA~~G--~~pi~~~~~a~Fl-~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~th-s~~~ 126 (167)
T cd07036 57 VGL--AV--GAAMNG--LRPIVEIMFADFA-LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQH-SQSL 126 (167)
T ss_pred HHH--HH--HHHHcC--CEEEEEeehHHHH-HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhh-hhhH
Confidence 887 55 488888 999996 799995 59999998877755 256888887775 46789996 5899
Q ss_pred HHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEE
Q psy2375 647 HVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYY 688 (929)
Q Consensus 647 ~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~r 688 (929)
++++|++||++|++|+|+.|+..+++.+++. ++| +++.
T Consensus 127 ~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P-~~~~ 164 (167)
T cd07036 127 EAWFAHIPGLKVVAPSTPYDAKGLLKAAIRD---DDP-VIFL 164 (167)
T ss_pred HHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCc-EEEE
Confidence 9999999999999999999999999999987 344 5544
No 45
>KOG0524|consensus
Probab=99.87 E-value=2.4e-21 Score=201.00 Aligned_cols=263 Identities=13% Similarity=0.172 Sum_probs=182.1
Q ss_pred cCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEecc
Q psy2375 490 ERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEG 569 (929)
Q Consensus 490 ~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~G 569 (929)
.++++-|.|....+.+-++. ++|++++..+.+-.-|--++ .+++++.| .+.|++|++
T Consensus 32 ~~~mtvreALn~amdEEm~r---D~~VfvmGEeV~qy~Gaykv-----------------tkGL~~K~---G~~RV~DTP 88 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDR---DPRVFVMGEEVGQYGGAYKV-----------------TKGLLDKF---GDKRVLDTP 88 (359)
T ss_pred ceeeeHHHHHHHHHHHHhcc---CCcEEEechhhhhcCCeeeh-----------------hhhHHHhc---CCceeecCc
Confidence 35788899999999877766 66778898887765433221 12443334 568999999
Q ss_pred ccchhhHHHHHHHHHHHhccCCCceEEEEeeh-hhHHHhHHHHHHHhh---hhc-----CCcEEEEeecCCeeecCCCCC
Q psy2375 570 INEAGGMGSWIAAATSYSTSNCIMIPFFTFYS-MFGLQRIGDLAWLAG---DIR-----ARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 570 IaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys-~F~~qR~~d~i~~~~---~~~-----~~~v~i~~t~~~~~~g~dG~t 640 (929)
|+|.+ |++.|+|.|..| ++|++-|.+ .|. +.+.|||-+.+ .|+ .-++.+-|..| .-.+-|.|
T Consensus 89 ItE~g----FtG~avGAA~~G--LrPi~efMtfnFs-mqAid~IiNsaakt~YmSgG~~~~piVfRGPnG--~~~gv~Aq 159 (359)
T KOG0524|consen 89 ITEMG----FTGIAVGAAMAG--LRPICEFMTFNFS-MQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNG--AAAGVAAQ 159 (359)
T ss_pred chhcc----cchhhHhHHHhC--cchhhhhhcchhH-HHHHHHHHHHHHHHhcccCCceeccEEEeCCCC--cccchhhh
Confidence 99999 445566777888 999987766 464 45556654332 222 22233334433 22345777
Q ss_pred CCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE-ecCCCCCCCCCCCcccccccccceEEEecc
Q psy2375 641 HEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI-TVMNENYSHPGLKKGQEKGIIKGLYLLKNH 719 (929)
Q Consensus 641 Hq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl-~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g 719 (929)
| +.+--++..++|+++|++|..+++.+++|+.|+|. ++|.||+.- ..+++.++.|.. . ....|++.-+
T Consensus 160 H-SQ~f~~wy~siPGlkvvapysaedakGLlKaAIRd---~NPVV~lEnelLYg~~f~i~~E--~-----ls~~fv~p~g 228 (359)
T KOG0524|consen 160 H-SQDFASWYGSIPGLKVVAPYSAEDAKGLLKAAIRD---ENPVVFLENELLYGLSFEIPEE--A-----LSKDFVLPLG 228 (359)
T ss_pred h-hhhhHHHhccCCCceEeccCChhhhhhHHHHhccC---CCCeEEEechhhcCCCccCChh--h-----cCcceeeecc
Confidence 7 33444799999999999999999999999999998 788887752 233444333321 1 1112444333
Q ss_pred CCc--CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccC
Q psy2375 720 NNE--KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKS 796 (929)
Q Consensus 720 ~~~--~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~ 796 (929)
++. ++|.||+|+++--++..|| ||+.|.++ |++++|||++|++|||.+.+ ..++.+.+
T Consensus 229 kAkier~G~~iTivt~Sr~v~~~leAA~~L~~~-Gvs~EVInlrSirP~D~~tI------------------~~Sv~KT~ 289 (359)
T KOG0524|consen 229 KAKIEREGTHITIVTYSRMVGHCLEAAETLVAK-GVSAEVINLRSIRPFDIETI------------------GASVKKTN 289 (359)
T ss_pred ceeeeecCCceEEEEechhHHHHHHHHHHHHhc-CCCceeEeeeccCcccHHHH------------------HHHHhhhc
Confidence 321 3468999999999999999 99999998 99999999999999998754 34554444
Q ss_pred CCcEEEEecccc--hhHHHHHh
Q psy2375 797 IGPIIVATDYMR--LFAEQVRA 816 (929)
Q Consensus 797 ~~~vVtved~~~--~~~~~i~~ 816 (929)
.+|+||+.|. |++..|.+
T Consensus 290 --~lvtVe~~~p~~gigaei~A 309 (359)
T KOG0524|consen 290 --RLVTVEEGWPQFGIGAEICA 309 (359)
T ss_pred --eEEEEeccccccchhHHHHH
Confidence 7999999886 55555544
No 46
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.87 E-value=1.7e-20 Score=207.56 Aligned_cols=254 Identities=19% Similarity=0.191 Sum_probs=174.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeC--CC-----
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALV-IRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQ--GH----- 141 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v-~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~--GH----- 141 (929)
.+++++|....+.+++-..++.- ...+ ..+.++|--.++.|- |...++...-++. +.|.|++. .|
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~-r~G~i~gf~~~~~Gq-EA~~vg~~~aL~~-----~~D~i~~~YR~h~~~l~ 95 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQ-RQGKIGGFYHLYIGQ-EAVQVGAAAALRP-----GEDWIFPTYRDHGHLLA 95 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcccCcCCcccH-HHHHHHHHHhcCC-----CCCEeecccCcccccee
Confidence 46788888888776666555542 2222 245566644444443 4444554444542 23555542 22
Q ss_pred -chHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCC
Q psy2375 142 -SAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTIN 220 (929)
Q Consensus 142 -~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~ 220 (929)
.+|.-...+.+.|+-+ ...+|++.|.|-... .-...-..+.+|+++++|+|.|+|.||. ++.+
T Consensus 96 ~G~~~~~~~a~~~G~~~--------g~~kGr~~~~h~~~~--~~~~~~~~~iVg~Q~~~AaG~A~a~k~~------~~~~ 159 (358)
T COG1071 96 RGVPLKEIMAELLGKAT--------GPCKGRGGSMHYSDK--EKGFLGGSGIVGTQIPLAAGAALALKYR------GTKD 159 (358)
T ss_pred cCCCHHHHHHHHhcccc--------CCCCCCCCccccccc--ccccCCCCceecccccHHHHHHHHHHHh------CCCC
Confidence 2222233333333311 113356666553211 1113445788999999999999999983 3345
Q ss_pred cEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhh
Q psy2375 221 RKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKL 300 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l 300 (929)
+.++||+|||+.++|.+|||||+|+.++|| +||||+||++.|+-|.... ...+.+..+..++|...+.|
T Consensus 160 ~Va~~~~GDGat~qG~FhEalN~A~v~klP-vvf~ieNN~yAiSvp~~~q-~~~~~~~~ra~aygipgv~V--------- 228 (358)
T COG1071 160 GVAVAFFGDGATNQGDFHEALNFAAVWKLP-VVFVIENNQYAISVPRSRQ-TAAEIIAARAAAYGIPGVRV--------- 228 (358)
T ss_pred cEEEEEecCCccccchHHHHHHHHHHhcCC-EEEEEecCCceeecchhhc-ccchhHHhhhhccCCCeEEE---------
Confidence 699999999999999999999999999998 9999999999999776531 22344666999999999998
Q ss_pred hhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC--
Q psy2375 301 LKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN-- 378 (929)
Q Consensus 301 ~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~-- 378 (929)
||+|+.++|++.++|+++
T Consensus 229 ------------------------------------------------------------DG~D~~avy~~~~~A~e~AR 248 (358)
T COG1071 229 ------------------------------------------------------------DGNDVLAVYEAAKEAVERAR 248 (358)
T ss_pred ------------------------------------------------------------CCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999874
Q ss_pred -CCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhc
Q psy2375 379 -KDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFL 423 (929)
Q Consensus 379 -~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~ 423 (929)
.++||+|.+.|.+-.||+.+ .++. ++.++++++.|+++.
T Consensus 249 ~g~GPtLIE~~tYR~~~HS~s-Dd~~-----~YRskeE~~~~~~~D 288 (358)
T COG1071 249 AGEGPTLIEAVTYRYGGHSTS-DDPS-----KYRSKEEVEEWKKRD 288 (358)
T ss_pred cCCCCEEEEEEEeecCCCCCC-CCcc-----ccCCHHHHHHHhccC
Confidence 36899999999999999863 2212 245889999998754
No 47
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.85 E-value=8.8e-20 Score=204.66 Aligned_cols=263 Identities=15% Similarity=0.095 Sum_probs=182.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHH
Q psy2375 69 DFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYA 148 (929)
Q Consensus 69 ~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya 148 (929)
+.+++++|.+..+.+++...++.-...-...+.+.|...++.|- |...++....++ .+|.|+.. |-+ .+
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~Gq-Ea~~vg~~~al~------~~D~~~~~-yR~---~~ 83 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGVIKLLA------ETDYVCST-YRD---HV 83 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCh-HHHHHHHHHhCC------CCCEEEcc-ccc---HH
Confidence 34788999999988888888876433222234455655545543 444444444453 35666664 333 23
Q ss_pred HHHHcCCCCHHHHh-hhc-cc---cCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEE
Q psy2375 149 RAFLEGRLTEEQMI-NFR-QE---VDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKI 223 (929)
Q Consensus 149 ~~~l~Gr~~~~~l~-~fR-~~---~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v 223 (929)
+.+..| ++.+++. .+. +. +.|.|.|.|... .|..+.-..++||.|++.|+|.|.+.||...+......++.|
T Consensus 84 ~~la~G-~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~--~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vv 160 (341)
T CHL00149 84 HALSKG-VPPKNVMAELFGKETGCSRGRGGSMHIFS--APHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVT 160 (341)
T ss_pred HHHHcC-CCHHHHHHHHcCCCCCCCCCCCCCccccc--hhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 344456 4444432 332 22 224444555432 232233456899999999999999998853321111357899
Q ss_pred EEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhc
Q psy2375 224 WILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKC 303 (929)
Q Consensus 224 ~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~ 303 (929)
+||+|||++++|.++|+||+|+.++|+ +||||.+|+++++.|.... ....++.++.+++|+..++|
T Consensus 161 v~~~GDGa~~~G~~~Ealn~A~~~~LP-vifvv~NN~~~i~~~~~~~-~~~~d~a~~a~a~G~~~~~V------------ 226 (341)
T CHL00149 161 ACFFGDGTTNNGQFFECLNMAVLWKLP-IIFVVENNQWAIGMAHHRS-TSIPEIHKKAEAFGLPGIEV------------ 226 (341)
T ss_pred EEEeCCchhhhcHHHHHHHHHhhcCCC-EEEEEEeCCeeeecchhhe-eCCccHHHHHHhCCCCEEEE------------
Confidence 999999999999999999999999997 9999999999999887543 23467999999999999998
Q ss_pred CchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CC
Q psy2375 304 DQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KD 380 (929)
Q Consensus 304 ~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~ 380 (929)
||+|+.+++++++.|.+. .+
T Consensus 227 ---------------------------------------------------------dg~d~~av~~a~~~A~~~ar~~~ 249 (341)
T CHL00149 227 ---------------------------------------------------------DGMDVLAVREVAKEAVERARQGD 249 (341)
T ss_pred ---------------------------------------------------------eCCCHHHHHHHHHHHHHHHHhCC
Confidence 899999888777666542 36
Q ss_pred CCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhc
Q psy2375 381 KPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFL 423 (929)
Q Consensus 381 ~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~ 423 (929)
+|++|.++|.+.+||+.+ ++ .+ +.+++|++.|+.+.
T Consensus 250 gP~lIev~tyR~~gHs~~--D~--~~---YR~~~e~~~~~~~D 285 (341)
T CHL00149 250 GPTLIEALTYRFRGHSLA--DP--DE---LRSKQEKEAWVARD 285 (341)
T ss_pred CCEEEEEEEecCCCcCCC--CC--cc---CCCHHHHHHHhcCC
Confidence 899999999999999863 22 22 45889999998753
No 48
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.85 E-value=8.3e-20 Score=205.64 Aligned_cols=251 Identities=15% Similarity=0.127 Sum_probs=171.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHH
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYAR 149 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~ 149 (929)
-+++++|.+.++.+++...++.-.......+.++|...++.|- |...++.-..++ .+|.||.. |-. .++
T Consensus 26 ~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~Gq-EA~~vg~~~aL~------~~D~~~~~-yR~---hg~ 94 (362)
T PLN02269 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQ-EAVAVGMEAAIT------KEDAIITA-YRD---HCT 94 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCh-HHHHHHHHHhcC------CCCEEEec-hhh---HHH
Confidence 3467888888888888877776433222344555655444443 434444333454 35777775 444 344
Q ss_pred HHHcCCCCHHHHh-hh-ccc---cCCCCCCCCCCCCCCCC-ccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEE
Q psy2375 150 AFLEGRLTEEQMI-NF-RQE---VDGYGLSSYPHPKLMPK-FWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKI 223 (929)
Q Consensus 150 ~~l~Gr~~~~~l~-~f-R~~---~~~~gl~~~p~p~~~p~-~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v 223 (929)
.+..|. +.+++. .+ -+. +.|.|.|.|... ++ .+.-.++++|.+++.|+|+|++.|| ++.+..+
T Consensus 95 ~la~G~-~~~~~~ae~~g~~~g~~~GrggsmH~~~---~~~~~~~~~~~vG~~~p~A~G~A~A~k~-------~~~~~v~ 163 (362)
T PLN02269 95 HLGRGG-TVLEVFAELMGRKDGCSRGKGGSMHFYK---KDANFYGGHGIVGAQVPLGAGLAFAQKY-------NKEENVA 163 (362)
T ss_pred HHHcCC-CHHHHHHHHcCCCCCCCCCCCCcccccc---hhcCccccCchhhccccHHHHHHHHHHH-------hCCCCeE
Confidence 555674 444433 22 121 123344444321 22 2345678999999999999988887 3457899
Q ss_pred EEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhc
Q psy2375 224 WILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKC 303 (929)
Q Consensus 224 ~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~ 303 (929)
+||+|||+++||.+|||||+|+.++|+ +||||+||++.++.|+.... ....+.+ ++++...+.|
T Consensus 164 v~~~GDGa~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~-~~~~~~~--~~~~~p~~~V------------ 227 (362)
T PLN02269 164 FALYGDGAANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAA-KSPAYYK--RGDYVPGLKV------------ 227 (362)
T ss_pred EEEECCCCcccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhc-cchHHHH--hhcCCCeEEE------------
Confidence 999999999999999999999999997 99999999999999875432 2233432 3345556776
Q ss_pred CchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC--CCC
Q psy2375 304 DQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN--KDK 381 (929)
Q Consensus 304 ~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~--~~~ 381 (929)
||||+.++++|++.|++. +++
T Consensus 228 ---------------------------------------------------------DG~D~~av~~a~~~A~~~aR~~g 250 (362)
T PLN02269 228 ---------------------------------------------------------DGMDVLAVKQACKFAKEHALSNG 250 (362)
T ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999988752 278
Q ss_pred CeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHh
Q psy2375 382 PTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 382 P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 421 (929)
|++|.++|++.+||+.+ + ... .+.++++++.++.
T Consensus 251 P~lIe~~tyR~~gHs~~--D-~~~---~YR~~~E~~~~~~ 284 (362)
T PLN02269 251 PIVLEMDTYRYHGHSMS--D-PGS---TYRTRDEISGVRQ 284 (362)
T ss_pred CEEEEEecCcCCCcCCC--C-CCc---ccCCHHHHHHHHh
Confidence 99999999999999852 2 211 2458889998874
No 49
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.85 E-value=2e-19 Score=206.29 Aligned_cols=261 Identities=15% Similarity=0.080 Sum_probs=177.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHH
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYAR 149 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~ 149 (929)
.++++++.+.++.+++-..++.....-...+.+.|....+.|- |...++....++ .+|.|+. .|-. .++
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~Gq-EA~~vg~~~aL~------~~D~v~~-~yR~---h~~ 150 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLK------KDDSVVS-TYRD---HVH 150 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCc-HHHHHHHHHHcC------CCCEEEc-cCcC---hHH
Confidence 4577888888888877777776433222234444544434443 444444444554 3577877 6666 333
Q ss_pred HHHcCCCCHHHHh-hhcc-c-c--CCCCCCCCCCCCCCCCc-cccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEE
Q psy2375 150 AFLEGRLTEEQMI-NFRQ-E-V--DGYGLSSYPHPKLMPKF-WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKI 223 (929)
Q Consensus 150 ~~l~Gr~~~~~l~-~fR~-~-~--~~~gl~~~p~p~~~p~~-~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v 223 (929)
.+..|. +.+++. .+.- . . .|.|-+.|-. .++. ..-..+++|.+++.|+|.|++.||..........++.|
T Consensus 151 ~La~G~-~~~~~mael~Gk~~g~~~GrggsmH~~---~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vv 226 (433)
T PLN02374 151 ALSKGV-PARAVMSELFGKATGCCRGQGGSMHMF---SKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVT 226 (433)
T ss_pred hhhcCC-CHHHHHHHHcCCCCCCCCCCCCcCccC---chhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEE
Confidence 445564 555543 3322 1 1 1233333321 1221 12235789999999999999999743220011357899
Q ss_pred EEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhc
Q psy2375 224 WILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKC 303 (929)
Q Consensus 224 ~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~ 303 (929)
|||+|||++++|.+||+||+|+.++|+ +||||.||++.++.|.... ....++.++.+++||.++.|
T Consensus 227 v~~~GDGa~~eG~f~EaLn~A~~~~LP-vIfVV~NN~yaig~~~~~~-t~~~dia~~A~a~G~~~~~V------------ 292 (433)
T PLN02374 227 LAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TSDPEIWKKGPAFGMPGVHV------------ 292 (433)
T ss_pred EEEECCCccccChHHHHHHHHHHhCCC-EEEEEeCCCEeecceeeec-cCCCCHHHHHHhcCCcEEEE------------
Confidence 999999999999999999999999998 9999999999998876542 22457899999999999998
Q ss_pred CchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CC
Q psy2375 304 DQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KD 380 (929)
Q Consensus 304 ~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~ 380 (929)
||+|+.+|++++++|++. .+
T Consensus 293 ---------------------------------------------------------DG~D~~av~~a~~~A~~~Ar~g~ 315 (433)
T PLN02374 293 ---------------------------------------------------------DGMDVLKVREVAKEAIERARRGE 315 (433)
T ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHHHHHHHcC
Confidence 899999999777666542 37
Q ss_pred CCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhc
Q psy2375 381 KPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFL 423 (929)
Q Consensus 381 ~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~ 423 (929)
+|++|+++|++.+||+.+ +.. .+.++++++.|+++.
T Consensus 316 gP~LIe~~tyR~~GHs~~--D~~-----~YR~~~e~~~~~~~D 351 (433)
T PLN02374 316 GPTLVECETYRFRGHSLA--DPD-----ELRDPAEKAHYAARD 351 (433)
T ss_pred CCEEEEEEEEecCCcCCC--Ccc-----ccCCHHHHHHHHcCC
Confidence 899999999999999863 221 145788888888653
No 50
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.82 E-value=1.6e-18 Score=191.39 Aligned_cols=199 Identities=20% Similarity=0.189 Sum_probs=151.4
Q ss_pred CcEEEeCCCchHHHHHHHHHcCCCCHHHHh-hhc-cc---cCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHH
Q psy2375 133 GDLIYIQGHSAPGVYARAFLEGRLTEEQMI-NFR-QE---VDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFL 207 (929)
Q Consensus 133 dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~-~fR-~~---~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~ 207 (929)
+|.|+. .|-+ +++.+..|. +.+++. .+. +. ..|.|.|.|..... ++ ....+++||.+++.|+|.|++.
T Consensus 48 ~D~~~~-~yR~---~~~~la~G~-~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~-~~-~~~~~g~lG~~~p~a~G~a~a~ 120 (293)
T cd02000 48 GDWVFP-TYRD---HGHALARGV-DLKEMLAELFGKETGPCKGRGGSMHIGDKE-KN-FFGGNGIVGGQVPLAAGAALAL 120 (293)
T ss_pred CCEEEe-cchh---HHHHHHcCC-CHHHHHHHHcCCCCCCCCCCCCCCCCCchh-cC-ccccccccccchhHHHHHHHHH
Confidence 577775 7777 556666785 444433 332 11 22445556554321 33 5778899999999999999888
Q ss_pred HHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCce
Q psy2375 208 KYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWN 287 (929)
Q Consensus 208 kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~ 287 (929)
|+. ..+++|+|++|||++.+|.++|+|++|++++|| ++|||+||++.++.|.... ....++.++.+++||.
T Consensus 121 k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lP-vi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~ 191 (293)
T cd02000 121 KYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALWKLP-VIFVCENNGYAISTPTSRQ-TAGTSIADRAAAYGIP 191 (293)
T ss_pred HHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhhCCC-EEEEEeeCCeeccCCHHHH-hCCccHHHHHHhCCCC
Confidence 862 357899999999999999999999999999997 9999999999998886542 2246788999999999
Q ss_pred EEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHH
Q psy2375 288 VIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRK 367 (929)
Q Consensus 288 vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~ 367 (929)
.+.| ||+|+.+
T Consensus 192 ~~~V---------------------------------------------------------------------dg~d~~~ 202 (293)
T cd02000 192 GIRV---------------------------------------------------------------------DGNDVLA 202 (293)
T ss_pred EEEE---------------------------------------------------------------------CCCCHHH
Confidence 9998 8999999
Q ss_pred HHHHHHHHHh---CCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhh
Q psy2375 368 IYSAFKMAQK---NKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDF 422 (929)
Q Consensus 368 v~~a~~~a~~---~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~ 422 (929)
+++|+++|.+ ..++|+||.+.|.+.+||+. .+.. .. +.++++++.++.+
T Consensus 203 v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~--~dd~-~~---Yr~~~e~~~~~~~ 254 (293)
T cd02000 203 VYEAAKEAVERARAGGGPTLIEAVTYRLGGHST--SDDP-SR---YRTKEEVEEWKKR 254 (293)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEeccCCCCC--CCCc-cc---CCCHHHHHHHhcC
Confidence 9999998875 23789999999999999984 2222 22 3478888887654
No 51
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.79 E-value=9.6e-18 Score=186.77 Aligned_cols=250 Identities=16% Similarity=0.136 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHc
Q psy2375 74 IKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLE 153 (929)
Q Consensus 74 ~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~ 153 (929)
++|.+.++.+++-..++.....-...+.+.|+..++.|- |...++.-..++ .+|.||.. |-. .++.+..
T Consensus 2 ~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~Gq-Ea~~vg~~~al~------~~D~~~~~-yR~---~~~~la~ 70 (315)
T TIGR03182 2 EELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQ-EAVAVGLIAALK------PDDYVITS-YRD---HGHALAR 70 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCh-HHHHHHHHHhCC------CCCEEEec-hhh---HHHHHHc
Confidence 345555665566555554221111233445544333333 333333333453 25666653 444 2334446
Q ss_pred CCCCHHHHhh-hc-cc---cCCCCCCCCCCCCCCCC-ccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEE
Q psy2375 154 GRLTEEQMIN-FR-QE---VDGYGLSSYPHPKLMPK-FWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILC 227 (929)
Q Consensus 154 Gr~~~~~l~~-fR-~~---~~~~gl~~~p~p~~~p~-~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~ 227 (929)
| ++.+++.. +. +. +.|.|.|.|... |+ ...-..++||.+++.|+|.|++.++ .+.++.|+|++
T Consensus 71 G-~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~---~~~~~~~~~g~~G~~lp~AiGaa~A~~~-------~~~~~~vv~~~ 139 (315)
T TIGR03182 71 G-VPPKEVMAELTGRATGCSKGKGGSMHMFD---REKNFYGGHGIVGAQVPLATGLAFANKY-------RGNDNVTACFF 139 (315)
T ss_pred C-CCHHHHHHHHcCCCCCCCCCCCCCCCcCc---hhhCcccCcCcccccccHHHHHHHHHHH-------hCCCCEEEEEe
Confidence 6 45444432 22 22 123344444322 22 1233568999999999999988886 23578999999
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchh
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNG 307 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~ 307 (929)
|||++.+|.++|+||+|+.++|+ ++|||.+|++.++.|.... ....++.++.+++|+..+.|
T Consensus 140 GDGa~~~g~~~ealn~A~~~~lP-vi~vv~NN~yg~s~~~~~~-~~~~~~a~~A~a~G~~~~~V---------------- 201 (315)
T TIGR03182 140 GDGAANQGQFYESFNMAALWKLP-VIFVIENNLYAMGTSVERS-SSVTDLYKRGESFGIPGERV---------------- 201 (315)
T ss_pred CCCcccccHHHHHHHHhhccCcC-EEEEEEcCCccccCCHHHH-hCCcCHHHHHHhCCCCEEEE----------------
Confidence 99999999999999999999997 8889999999999887542 23457899999999999998
Q ss_pred HHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeE
Q psy2375 308 ILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTV 384 (929)
Q Consensus 308 ~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~v 384 (929)
||+|+.++++++++|++. .++|++
T Consensus 202 -----------------------------------------------------dg~d~~av~~a~~~A~~~ar~~~gP~l 228 (315)
T TIGR03182 202 -----------------------------------------------------DGMDVLAVREAAKEAVERARSGKGPIL 228 (315)
T ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHHHHHHccCCCEE
Confidence 899999999999988752 368999
Q ss_pred EEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhc
Q psy2375 385 LLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFL 423 (929)
Q Consensus 385 I~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~ 423 (929)
|.+.|.+.+||+.+ ++. .+.++++++.++++.
T Consensus 229 Ie~~t~R~~gHs~~--D~~-----~Yr~~~e~~~~~~~d 260 (315)
T TIGR03182 229 LEMKTYRFRGHSMS--DPA-----KYRSKEEVEEWRKRD 260 (315)
T ss_pred EEEeCCcCCCCCCC--Ccc-----ccCCHHHHHHHHhcC
Confidence 99999999999862 221 245888999998753
No 52
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.78 E-value=3.8e-18 Score=188.65 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=140.9
Q ss_pred CcEEEeCCCchHHHHHHHHHcCCCCHHH-HhhhccccCCCCCCCC-CCCCCCCC-ccccCcccCchhHHHHHHHHHHHHH
Q psy2375 133 GDLIYIQGHSAPGVYARAFLEGRLTEEQ-MINFRQEVDGYGLSSY-PHPKLMPK-FWQFPTVSMGLGPLTAIHQARFLKY 209 (929)
Q Consensus 133 dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~-l~~fR~~~~~~gl~~~-p~p~~~p~-~~~f~tgs~G~g~~~Aig~A~a~ky 209 (929)
+|+|+.. |-.-+. .+..|. +.++ +..|.....+.|=+.| .|-. .++ .....++++|.+.+.|.|.|++.|+
T Consensus 46 ~D~v~~~-yR~~~~---~la~g~-~~~~~~~e~~g~~~g~~g~~~~~~~~-~~~~~~~~~~~~vg~~~p~a~G~A~a~k~ 119 (300)
T PF00676_consen 46 GDWVFPY-YRDHGH---ALARGI-DLEEIFAELLGKAKGHGGGRHPLHFS-DKGLNILGASSPVGAQVPIAAGVALAIKY 119 (300)
T ss_dssp TSEEEEC-STTHHH---HHHTTT--HHHHHHHHHTBTTSTTTTGCTTEEE-BTTTTBEEEESSTTTHHHHHHHHHHHHHH
T ss_pred CCEEEec-ccchhh---hhhccc-cccchhHHhcCcccCCCCCccccccc-cccceeeeccccccccCccccchhHhhhh
Confidence 5887765 777433 344553 3333 3344322212111122 1110 122 1334578899999999999988885
Q ss_pred HhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE
Q psy2375 210 LHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI 289 (929)
Q Consensus 210 l~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi 289 (929)
++.+..++||+|||++.+|.++||||+|+.++|| +||||.||++.++.|.... .....+..+.+++|...+
T Consensus 120 -------~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP-vifvveNN~~aist~~~~~-~~~~~~~~~a~~~gip~~ 190 (300)
T PF00676_consen 120 -------RGKDGVVVCFFGDGATSQGDFHEALNLAALWKLP-VIFVVENNQYAISTPTEEQ-TASPDIADRAKGYGIPGI 190 (300)
T ss_dssp -------TTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS-EEEEEEEESEETTEEHHHH-CSSSTSGGGGGGTTSEEE
T ss_pred -------cCCceeEEEEecCcccccCccHHHHHHHhhccCC-eEEEEecCCcccccCcccc-ccccchhhhhhccCCcEE
Confidence 4568899999999999999999999999999998 9999999999999998763 345678889999999999
Q ss_pred EEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHH
Q psy2375 290 KVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIY 369 (929)
Q Consensus 290 ~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~ 369 (929)
.| ||.|+.+++
T Consensus 191 ~V---------------------------------------------------------------------DG~D~~av~ 201 (300)
T PF00676_consen 191 RV---------------------------------------------------------------------DGNDVEAVY 201 (300)
T ss_dssp EE---------------------------------------------------------------------ETTSHHHHH
T ss_pred EE---------------------------------------------------------------------CCEeHHHHH
Confidence 98 899999999
Q ss_pred HHHHHHHhC---CCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHh
Q psy2375 370 SAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 370 ~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 421 (929)
+|+++|+++ .++|++|.++|.+-+||+.+ ++... +.++++++.+++
T Consensus 202 ~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~--Dd~~~----yr~~~e~~~~~~ 250 (300)
T PF00676_consen 202 EAAKEAVEYARAGKGPVLIEAVTYRLRGHSES--DDPTF----YRSPEEYEEWWK 250 (300)
T ss_dssp HHHHHHHHHHHTTT--EEEEEEE--SS-SSTT--SCGGG----TSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeccCCCCCCC--CCccc----cCCHHHHHHHHh
Confidence 999999874 37899999999999999862 22211 335677777655
No 53
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.77 E-value=4.7e-17 Score=183.07 Aligned_cols=250 Identities=15% Similarity=0.113 Sum_probs=167.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHH
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYAR 149 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~ 149 (929)
.++.+++.+..+++++...++.....-.+.+.+|.+ -++.|- |...++.-..++ .+|.|+. .|-+ .++
T Consensus 20 ~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~-~~~~Gq-Ea~~vg~~~al~------~~D~~~~-~yR~---h~~ 87 (341)
T TIGR03181 20 DLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTY-APNLGQ-EAAQVGSALALR------KDDWVFP-SYRD---HAA 87 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecc-cCCCCh-HHHHHHHHHHcC------CCCEEEc-chhh---HHH
Confidence 357888888888888877777532221122333321 122222 332233233343 2466555 3444 334
Q ss_pred HHHcCCCCHHHHhh-hccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEc
Q psy2375 150 AFLEGRLTEEQMIN-FRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCG 228 (929)
Q Consensus 150 ~~l~Gr~~~~~l~~-fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~G 228 (929)
.+..|. +..++.. +... ..|....++ -+ ..-.++++|.|++.|+|.|.+.|+ ...++.|+||+|
T Consensus 88 ~l~~G~-~~~~~~ae~~g~--~~g~~~~~~----~~-~~g~~~~vG~~lp~AiGaAla~k~-------~~~~~~vv~~~G 152 (341)
T TIGR03181 88 MLARGV-PLVEILLYWRGD--ERGSWDPEG----VN-ILPPNIPIGTQYLHAAGVAYALKL-------RGEDNVAVTYFG 152 (341)
T ss_pred HHHcCC-CHHHHHHHhcCc--CcCCCCchh----cC-ccCCCchHhcchhHHHhHHHHHHh-------hCCCCEEEEEec
Confidence 555674 4444332 3221 233222111 11 233467899999999999987775 335789999999
Q ss_pred CCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhH
Q psy2375 229 DGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGI 308 (929)
Q Consensus 229 DGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~ 308 (929)
||++++|+++|+|++|++++|+ +||||.||++.++.+.... ....++.++.+++||..++|
T Consensus 153 DGa~~~g~~~EaL~tA~~~~LP-vi~Vv~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~V----------------- 213 (341)
T TIGR03181 153 DGGTSEGDFYEALNFAGVFKAP-VVFFVQNNQWAISVPRSKQ-TAAPTLAQKAIAYGIPGVQV----------------- 213 (341)
T ss_pred CCccccChHHHHHHHHhccCCC-EEEEEECCCCccccchhhh-hCCcCHHHHHhhCCCCEEEE-----------------
Confidence 9999999999999999999998 9999999999988775432 12457889999999999998
Q ss_pred HHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeEE
Q psy2375 309 LKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTVL 385 (929)
Q Consensus 309 l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI 385 (929)
||+|..+++++++.|.+. .++|++|
T Consensus 214 ----------------------------------------------------dg~d~~av~~a~~~A~~~a~~~~gP~lI 241 (341)
T TIGR03181 214 ----------------------------------------------------DGNDVLAVYAVTKEAVERARSGGGPTLI 241 (341)
T ss_pred ----------------------------------------------------CCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 899999888888776552 3789999
Q ss_pred EEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhc
Q psy2375 386 LIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFL 423 (929)
Q Consensus 386 ~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~ 423 (929)
.++|.+-+||+.. +.. . .+.+.++++.|+++.
T Consensus 242 ev~t~R~~gH~~~--D~~-~---~YR~~~e~~~~~~~D 273 (341)
T TIGR03181 242 EAVTYRLGPHTTA--DDP-T---RYRTKEEEEEWRKKD 273 (341)
T ss_pred EEEeecCCCCCCC--CCC-c---cCCCHHHHHHHhcCC
Confidence 9999999998862 111 1 245888898888753
No 54
>KOG0525|consensus
Probab=99.67 E-value=5.8e-16 Score=158.86 Aligned_cols=232 Identities=15% Similarity=0.203 Sum_probs=155.1
Q ss_pred CcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccc
Q psy2375 491 RKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGI 570 (929)
Q Consensus 491 ~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GI 570 (929)
+++..-++...+|..-+.. ++|-|++..|.+- +++||-+- ++...| ..+|+||+++
T Consensus 39 ~~mnl~qsvn~al~ial~t---dp~a~vfgedv~f----ggvfrct~--------------gl~~kf---gk~rvfntpl 94 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALET---DPRAVVFGEDVAF----GGVFRCTT--------------GLAEKF---GKDRVFNTPL 94 (362)
T ss_pred ccchHHHHHHHHHHHHhhc---CCceEEecccccc----ceEEEeec--------------chHHHh---CccccccCch
Confidence 5566666777777743333 3445888999764 45565211 111222 3589999999
Q ss_pred cchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHH-hhh--hc------CCcEEEEeecCCeeecCCCCC
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWL-AGD--IR------ARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~-~~~--~~------~~~v~i~~t~~~~~~g~dG~t 640 (929)
+||+.+++ |.|+|..| -..+. +-|+.+ .--++||+-+ ++. |+ +.+..+-++.| .+|..|..
T Consensus 95 ceqgivgf----gig~aa~g--~~aiaeiqfady-ifpafdqivneaakfryrsgnqfncg~ltir~p~g--avghg~~y 165 (362)
T KOG0525|consen 95 CEQGIVGF----GIGLAAMG--ATAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWG--AVGHGALY 165 (362)
T ss_pred hhccccee----chhhhhcc--cceEEEEeeccc-cchhHHHHHHHHHhheeccCCccccCceEEecccc--cccccccc
Confidence 99997665 77788888 44433 233322 1234566643 222 22 22233333333 24666677
Q ss_pred C-CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCC-CCcccccccccceEEEec
Q psy2375 641 H-EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPG-LKKGQEKGIIKGLYLLKN 718 (929)
Q Consensus 641 H-q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~-~~~~~~~~i~~G~y~l~~ 718 (929)
| |+.| +++.+.|+++|+.|..+.|++.++..+++. |+|.+|+. |. ++....+.++.+.|.+.-
T Consensus 166 hsqspe--aff~h~pgikvviprsp~qakglllscird---pnp~iffe----------pk~lyr~a~edvp~~dy~ipl 230 (362)
T KOG0525|consen 166 HSQSPE--AFFCHVPGIKVVIPRSPRQAKGLLLSCIRD---PNPCIFFE----------PKILYRQAVEDVPEGDYMIPL 230 (362)
T ss_pred ccCCch--hheecCCCceEEecCCcchhhceeeeeccC---CCceEEec----------hHHHHHHhhhhCCCCCccccc
Confidence 7 5554 899999999999999999999999999998 77777653 22 233334455666666654
Q ss_pred cCCc--CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchh
Q psy2375 719 HNNE--KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 719 g~~~--~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~ 770 (929)
+.+. +.|+|++|++||+.++-++ +|.+-+++.||+++|||+.++-|+|.|.+
T Consensus 231 sqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d~v 285 (362)
T KOG0525|consen 231 SQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTV 285 (362)
T ss_pred cHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeecccCccHHHH
Confidence 3322 4578999999999999988 88877766699999999999999998753
No 55
>KOG1182|consensus
Probab=99.63 E-value=1.5e-15 Score=160.86 Aligned_cols=283 Identities=17% Similarity=0.176 Sum_probs=181.8
Q ss_pred HHHHHHHHCCCcCCCCC--CcccccCCCCCcCCCCC--------------------ChhhHHHHHHHHHHHHHHHHH-HH
Q psy2375 38 KMIKFLLRHGMNVPLFK--NTAYINTISNNFDDDFP--------------------GNIKIEEHLQSLIRWNAMALV-IR 94 (929)
Q Consensus 38 ~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--------------------~~~~l~~~~~~~iR~~~~~~v-~~ 94 (929)
.+.++..+.-.++|... .|+=|+-|+++.-++.| +.+-..+..+++.-.++|+-+ ..
T Consensus 28 ~~~~~~~~~~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYe 107 (432)
T KOG1182|consen 28 SFSQYSSEDYKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYE 107 (432)
T ss_pred hcccchhhhhccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445566543 56667777776655555 233455666777778888876 34
Q ss_pred hccCCCCCCCCcchhhhHH--HHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHhh--hccc---
Q psy2375 95 ANKIDSSLGGHLSSFASLA--HILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMIN--FRQE--- 167 (929)
Q Consensus 95 a~~~~~~~gGH~~s~~s~a--~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~--fR~~--- 167 (929)
+++ .|.|+-++-.. +-..++-..-+ ..+|+||.|-.-+- .+...| ++.|++.+ |-..
T Consensus 108 sQR-----QGRiSFYmT~~GEEa~higSAAAL------~p~Dli~gQYREaG----VLlwRg-ftle~f~~qCyGn~~d~ 171 (432)
T KOG1182|consen 108 SQR-----QGRISFYMTNFGEEAIHIGSAAAL------EPQDLIYGQYREAG----VLLWRG-FTLEEFMNQCYGNKSDL 171 (432)
T ss_pred Hhh-----cceEEEEEeccchhhhhhhhhhhC------CcccccccccccCc----eEEEcC-ccHHHHHHHhcCCcccc
Confidence 444 45555444321 11111100001 25788888877663 233345 45566554 2211
Q ss_pred cCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHc
Q psy2375 168 VDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAARE 247 (929)
Q Consensus 168 ~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~ 247 (929)
..|..++-|--..+ -.| ..-+.++.+++++|+|.|.++|. .+..++.++|++|||+.+||.++.|+|+|+..
T Consensus 172 gkGrQMPvHyGs~e-lnf-~tissplatqlpqAvGaaYa~k~------~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtl 243 (432)
T KOG1182|consen 172 GKGRQMPVHYGSKE-LNF-VTISSPLATQLPQAVGAAYALKM------RKKNNACAVTYFGDGAASEGDAHAAFNFAATL 243 (432)
T ss_pred ccccccccccCccc-cce-EEecchhhhccchhhhhhhhhhh------cccCCeEEEEEecCCcccccchhhhhhHHHHh
Confidence 12333443322222 122 22345588999999999988774 24456899999999999999999999999999
Q ss_pred CCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccC
Q psy2375 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSK 327 (929)
Q Consensus 248 ~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~ 327 (929)
+.+ +||++-+|++.|+.|+... --.+-+..+-.++|...|+|
T Consensus 244 e~P-vif~CRNNG~AISTptseQ-yr~DGIa~kG~aYGi~sIRV------------------------------------ 285 (432)
T KOG1182|consen 244 ECP-VIFFCRNNGWAISTPTSEQ-YRGDGIAVKGPAYGIRSIRV------------------------------------ 285 (432)
T ss_pred CCC-EEEEEcCCCeeeccccHHH-hcCCceEEeccccceEEEEe------------------------------------
Confidence 988 9999999999999998752 11233455556677777777
Q ss_pred CchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEeeecccCCccCCCCCcc
Q psy2375 328 NSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEARNT 404 (929)
Q Consensus 328 ~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~~~ 404 (929)
||+|..+||.|.++|++. ..+|++|.+.|.+--.++. ..+ .
T Consensus 286 ---------------------------------DGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHST-SDD--S 329 (432)
T KOG1182|consen 286 ---------------------------------DGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHST-SDD--S 329 (432)
T ss_pred ---------------------------------cCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccC-CCc--c
Confidence 999999999999999874 3699999999998543443 122 1
Q ss_pred cccccCCCHHHHHHHHh
Q psy2375 405 AHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 405 ~H~~~~l~~~~~~~~r~ 421 (929)
+ ++.+.+|+..|.+
T Consensus 330 t---~YRsadEiq~W~~ 343 (432)
T KOG1182|consen 330 T---AYRSADEIQYWNK 343 (432)
T ss_pred c---cccchhhhhhhhc
Confidence 2 2346778887765
No 56
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.56 E-value=4.2e-14 Score=152.31 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=117.0
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCcc-CCcccHHHHHHHHHcCCC--eEEEEEecCCCcccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEM-DEPESISEISMAAREKLD--NLIMIVNCNLQRLDG 265 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~-~eg~~~eAl~~A~~~~L~--nli~vvn~N~~~idg 265 (929)
..+++|.+.+.|+|.|+|.+|... ..+.++..++||+|||++ .+|.++|+||+|+.++|+ -+||||.+|++.++.
T Consensus 111 npS~l~~~~pva~G~A~A~k~~~~--~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT 188 (265)
T cd02016 111 NPSHLEAVNPVVMGKTRAKQDYRG--DGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTT 188 (265)
T ss_pred CCcccccccCeehhHHHHHHHhcC--CccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEe
Confidence 356799999999999999998421 112346789999999996 699999999999999997 399999999999999
Q ss_pred cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHH
Q psy2375 266 PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLK 345 (929)
Q Consensus 266 ~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~ 345 (929)
|.... .....+.++.+++|..++.|
T Consensus 189 ~~~~~-~~~~~~~~~a~~~gip~~~V------------------------------------------------------ 213 (265)
T cd02016 189 DPRDS-RSSPYCTDVAKMIGAPIFHV------------------------------------------------------ 213 (265)
T ss_pred cHHHh-cccccHHHHHeecCCCEEEE------------------------------------------------------
Confidence 97653 34567888999999999998
Q ss_pred HHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEeeecccCCcc
Q psy2375 346 MIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGR 397 (929)
Q Consensus 346 ~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~ 397 (929)
||+|+++|++|.+.|++. .++|++|.+.|.+-+||..
T Consensus 214 ---------------dG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse 253 (265)
T cd02016 214 ---------------NGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNE 253 (265)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCC
Confidence 999999999999998773 3789999999999999975
No 57
>KOG0225|consensus
Probab=99.43 E-value=4.2e-12 Score=136.47 Aligned_cols=247 Identities=21% Similarity=0.186 Sum_probs=160.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CcchhhhHHHHHHHHHhhhcCCCCC---CCCCc-EEEeCCCchHH
Q psy2375 72 GNIKIEEHLQSLIRWNAMALVIRANKIDSSLGG--HLSSFASLAHILEIGFNHFWRAPTH---SHGGD-LIYIQGHSAPG 145 (929)
Q Consensus 72 ~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gG--H~~s~~s~a~l~~~l~~~~~~~p~~---~~~dd-~i~~~GH~ap~ 145 (929)
+.+++....+++++..-+++...+--|...+-| |+..-. +...+++..-++..|. ..++. +-|..|-+.-.
T Consensus 57 t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQ---EAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~ 133 (394)
T KOG0225|consen 57 TKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQ---EAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVRE 133 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccH---HHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHH
Confidence 356666777777776666665433222233334 665433 3334454544442111 01111 23334444422
Q ss_pred HHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEE
Q psy2375 146 VYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWI 225 (929)
Q Consensus 146 ~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~ 225 (929)
+ ..=|.||.+= -+.|+|=|. |-. .++| .=..|.+|.+++.+.|+|.|.|| +..+...++
T Consensus 134 v--~aEL~Gr~~G--------c~kGKGGSM--Hmy-~k~F-yGGnGIVGAQiPLGaGia~A~kY-------~~~~~v~~a 192 (394)
T KOG0225|consen 134 V--LAELMGRQAG--------CSKGKGGSM--HMY-AKNF-YGGNGIVGAQIPLGAGIAFAQKY-------NREDAVCFA 192 (394)
T ss_pred H--HHHHhccccc--------cccCCCcce--eee-cccc-cCccceeccCCCccccHHHHHHh-------ccCCceEEE
Confidence 2 2233444210 122444333 322 2332 33568899999999999999999 235688999
Q ss_pred EEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCc
Q psy2375 226 LCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQ 305 (929)
Q Consensus 226 ~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~ 305 (929)
+.|||+.+.|+.|||+|+|+-|+|| +|||+.+|++.+..++.... ...+... ||.=..-++|
T Consensus 193 lYGDGAaNQGQ~fEa~NMA~LW~LP-~IFvCENN~yGMGTs~~Ras-a~teyyk--RG~yiPGl~V-------------- 254 (394)
T KOG0225|consen 193 LYGDGAANQGQVFEAFNMAALWKLP-VIFVCENNHYGMGTSAERAS-ASTEYYK--RGDYIPGLKV-------------- 254 (394)
T ss_pred EeccccccchhHHHHhhHHHHhCCC-EEEEEccCCCccCcchhhhh-cChHHHh--ccCCCCceEE--------------
Confidence 9999999999999999999999999 99999999999988876542 3444443 3332555666
Q ss_pred hhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCC
Q psy2375 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKP 382 (929)
Q Consensus 306 ~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P 382 (929)
||.|+.+|++|.+.|+++ ..+|
T Consensus 255 -------------------------------------------------------dGmdvlaVr~a~KfA~~~~~~g~GP 279 (394)
T KOG0225|consen 255 -------------------------------------------------------DGMDVLAVREATKFAKKYALEGKGP 279 (394)
T ss_pred -------------------------------------------------------CCcchhhHHHHHHHHHHHHhcCCCC
Confidence 999999999999999885 2689
Q ss_pred eEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHh
Q psy2375 383 TVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 383 ~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 421 (929)
.++.+.|.+-.||+- .++..+ +.+.||+...|.
T Consensus 280 ilmE~~TYRy~GHSm--SDPg~s----YRtReEiq~vR~ 312 (394)
T KOG0225|consen 280 ILMEMDTYRYHGHSM--SDPGTS----YRTREEIQEVRQ 312 (394)
T ss_pred EEEEEeeeeeccccc--CCCCcc----cchHHHHHHHHh
Confidence 999999999999985 444333 337788887774
No 58
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.42 E-value=2.8e-13 Score=119.17 Aligned_cols=71 Identities=30% Similarity=0.558 Sum_probs=67.0
Q ss_pred ccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 855 ~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
...|.+|. ++++.+.+|++++||.|++||+||+||+|||+++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 3 i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 3 IKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 45788885 777899999999999999999999999999999999999999999999999999999999986
No 59
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.41 E-value=3.3e-14 Score=137.31 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=90.0
Q ss_pred CCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEE
Q psy2375 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVA 803 (929)
Q Consensus 725 g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtv 803 (929)
++|++||++|+++.+|+ |++.|+++ ||+++|||+++++|||++.+ .+.+.++ +.+|++
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~-Gi~~~vi~~~~i~P~d~~~l-------------------~~~~~~~-~~vvvv 67 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEE-GIKAGVIDLRTIKPFDEEAL-------------------LESLKKT-GRVVVV 67 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHT-TCEEEEEEEEEEESSBHHHH-------------------HHHSHHH-HHHHHS
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHc-CCceeEEeeEEEecccccch-------------------HHHHHHh-cccccc
Confidence 47999999999999999 99999999 99999999999999998653 4555555 689999
Q ss_pred ecccc--hhHHHHHhhccC---C---CcEEEEec-CcccccCChhhHHhhhcceehee
Q psy2375 804 TDYMR--LFAEQVRAFIPK---G---RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMK 852 (929)
Q Consensus 804 ed~~~--~~~~~i~~~l~~---~---~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~I 852 (929)
|||+. |+++.|.+++.+ . .++.++|. |.|..++ +++++++||+|+++|
T Consensus 68 ee~~~~gg~g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 68 EEHYKIGGLGSAIAEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp ETCESEEEEHSSHHHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred ccccccccHHHHHHHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99974 677777666654 1 46788999 8999999 999999999998875
No 60
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.37 E-value=8e-13 Score=130.35 Aligned_cols=65 Identities=34% Similarity=0.499 Sum_probs=61.8
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-..|++.+.+|++||+|++||+||+||+|||+++|.||.+|+|.+|++++||.|+.||+|+.|+.
T Consensus 76 Pm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 76 PMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred CcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 45688999999999999999999999999999999999999999999999999999999999863
No 61
>PRK06748 hypothetical protein; Validated
Probab=99.36 E-value=2e-12 Score=115.38 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=61.8
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe-cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES-EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt-~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
.+|.|.+|++++||.|++||+|++||| ||+..+|+||.+|+|.++++++|+.|..||+|+.|+++
T Consensus 11 ~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 11 CYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 468999999999999999999999999 78989999999999999999999999999999999754
No 62
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.34 E-value=7.6e-12 Score=126.23 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=92.7
Q ss_pred cccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc
Q psy2375 186 WQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG 265 (929)
Q Consensus 186 ~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg 265 (929)
.....++||.+++.|+|+| ++.+ +++|||++|||++.. .+++++.|.+++++-+++|+|++.+.+.+
T Consensus 41 ~~~~~g~~G~~~~~a~Gaa-----~a~~------~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~ 107 (168)
T cd00568 41 TSTGFGAMGYGLPAAIGAA-----LAAP------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIR 107 (168)
T ss_pred eCCCchhhhhhHHHHHHHH-----HhCC------CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHH
Confidence 3456799999999999999 4332 578999999999997 78999999999998666677766665533
Q ss_pred ccc---------ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhc
Q psy2375 266 PVR---------GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNF 336 (929)
Q Consensus 266 ~v~---------~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~ 336 (929)
... .......++.+.++++||++++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v--------------------------------------------- 142 (168)
T cd00568 108 MHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRV--------------------------------------------- 142 (168)
T ss_pred HHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEE---------------------------------------------
Confidence 220 01112346889999999999887
Q ss_pred cCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 337 FGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 337 fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
+ +++++.++++++.+. ++|+||+++|
T Consensus 143 ------------------------~--~~~~l~~a~~~a~~~-~~p~~i~v~~ 168 (168)
T cd00568 143 ------------------------E--DPEDLEAALAEALAA-GGPALIEVKT 168 (168)
T ss_pred ------------------------C--CHHHHHHHHHHHHhC-CCCEEEEEEC
Confidence 2 478899999999865 7899999987
No 63
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.31 E-value=5.6e-12 Score=110.03 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=60.8
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
..|++.+|+++.||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999999885
No 64
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.29 E-value=4.5e-12 Score=145.46 Aligned_cols=76 Identities=33% Similarity=0.580 Sum_probs=72.6
Q ss_pred eccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 852 KKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 852 Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+..+|.||+ +++|+|.+|++++||+|++||+|++|||||+.+||+||.+|+|.+|++++|++|.+|++|+.|+.
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~ 78 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence 35678999986 99999999999999999999999999999999999999999999999999999999999999975
No 65
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.29 E-value=5.5e-12 Score=145.20 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=75.9
Q ss_pred hcceeheeccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEE
Q psy2375 845 FENIIHMKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQIL 923 (929)
Q Consensus 845 fgldae~Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~ 923 (929)
|-.....+.+..+|.+|+ +++|+|.+|+|++||.|++||+||+||||||+++|+||.+|+|.++++++||.|++|++|+
T Consensus 84 ~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~ 163 (463)
T PLN02226 84 FSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVA 163 (463)
T ss_pred cccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEE
Confidence 334444557889999985 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q psy2375 924 ILEE 927 (929)
Q Consensus 924 ~i~~ 927 (929)
.|++
T Consensus 164 ~I~~ 167 (463)
T PLN02226 164 IISK 167 (463)
T ss_pred Eecc
Confidence 9964
No 66
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.25 E-value=1.1e-11 Score=141.70 Aligned_cols=80 Identities=31% Similarity=0.517 Sum_probs=75.0
Q ss_pred eeheeccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 848 IIHMKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 848 dae~Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
....|.+..+|.+|+ +++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 40 ~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 40 SYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred ccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 344577889999985 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred e
Q psy2375 927 E 927 (929)
Q Consensus 927 ~ 927 (929)
.
T Consensus 120 ~ 120 (418)
T PTZ00144 120 T 120 (418)
T ss_pred C
Confidence 4
No 67
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.24 E-value=5.5e-11 Score=121.27 Aligned_cols=115 Identities=19% Similarity=0.107 Sum_probs=92.3
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRG 269 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~ 269 (929)
.|+||.|++.|+|.+ ++. .+++|||++|||++. +..++|..|++++|+.+++|+|+|.+.+......
T Consensus 47 ~g~mG~~lp~AiGa~-----la~------~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 47 FGTLGVGLGYAIAAA-----LAR------PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred CCcccchHHHHHHHH-----HhC------CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 478999999999999 533 368999999999999 5678899999999999999999998877543211
Q ss_pred c----------ccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 270 N----------SKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 270 ~----------~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
. ....-++.+..+++|+...+|
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v------------------------------------------------ 145 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAFGGKGELV------------------------------------------------ 145 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHCCCeEEEE------------------------------------------------
Confidence 0 001246788899999998887
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
+ +++++.+|++++.+. ++|++|.+++
T Consensus 146 ---------------------~--~~~el~~al~~a~~~-~~p~liev~i 171 (172)
T cd02004 146 ---------------------T--TPEELKPALKRALAS-GKPALINVII 171 (172)
T ss_pred ---------------------C--CHHHHHHHHHHHHHc-CCCEEEEEEc
Confidence 3 588899999999876 7899999876
No 68
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.24 E-value=1.6e-11 Score=138.73 Aligned_cols=75 Identities=23% Similarity=0.450 Sum_probs=71.7
Q ss_pred ccccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 853 KIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+..+|.+| ++++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++.+++|+.|.+||+|+.+++
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 467899998 599999999999999999999999999999999999999999999999999999999999999974
No 69
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.24 E-value=5.4e-11 Score=122.18 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=94.7
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCccc-HHHHHHHHHcCCCeEEEEEecCCCcccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPES-ISEISMAAREKLDNLIMIVNCNLQRLDGPV 267 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~-~eAl~~A~~~~L~nli~vvn~N~~~idg~v 267 (929)
..|+||.|++.|+|++ ++. .+++|||++|||++. +. +++|..|.+++++.+++|+|||.+.+-+..
T Consensus 49 ~~g~mG~gl~~AiGa~-----la~------p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~ 115 (178)
T cd02008 49 TCTCMGASIGVAIGMA-----KAS------EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMTGGQ 115 (178)
T ss_pred ccccCccHHHHHhhHH-----hhC------CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceeccCCC
Confidence 4799999999999999 433 257899999999995 33 789999999999999999999987654321
Q ss_pred cc-------ccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 268 RG-------NSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 268 ~~-------~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
.. ... ...++.+.++++||+...|.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~----------------------------------------------- 148 (178)
T cd02008 116 PHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVV----------------------------------------------- 148 (178)
T ss_pred CCCCCcccccCCCCccCHHHHHHHCCCCEEEec-----------------------------------------------
Confidence 10 000 12468899999999998873
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
+++|++++.+|+++|.+. ++|++|++++
T Consensus 149 ---------------------~~~~l~~~~~al~~a~~~-~gp~lI~v~~ 176 (178)
T cd02008 149 ---------------------DPYDLKAIREELKEALAV-PGVSVIIAKR 176 (178)
T ss_pred ---------------------CccCHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 678999999999999875 7899999876
No 70
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.18 E-value=6.7e-11 Score=102.85 Aligned_cols=63 Identities=30% Similarity=0.514 Sum_probs=60.9
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-.|.+.+|+++.||+|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..||+|++|+
T Consensus 8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999999985
No 71
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.12 E-value=1.3e-10 Score=133.58 Aligned_cols=75 Identities=32% Similarity=0.527 Sum_probs=71.3
Q ss_pred ccccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 853 KIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+..+|.+| ++++|+|.+|++++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~ 78 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDE 78 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 366789998 499999999999999999999999999999999999999999999999999999999999999974
No 72
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.10 E-value=5.1e-10 Score=115.23 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=92.4
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeE-EEEEecCCCcccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNL-IMIVNCNLQRLDGPV 267 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nl-i~vvn~N~~~idg~v 267 (929)
..|+||.|++.|+|.| ++. . ++|+|++|||++. +...++..|++.++.|+ ++|+|||.+.+.+..
T Consensus 40 ~~g~mG~~lp~AiGaa-----la~------~-~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~ 105 (179)
T cd03372 40 MLGSMGLASSIGLGLA-----LAQ------P-RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQ 105 (179)
T ss_pred cccchhhHHHHHHHHH-----hcC------C-CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccCCC
Confidence 3799999999999999 432 1 6899999999996 45678888888886565 555788888876543
Q ss_pred cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHH
Q psy2375 268 RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMI 347 (929)
Q Consensus 268 ~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v 347 (929)
........++.+..+++|+....|
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~v-------------------------------------------------------- 129 (179)
T cd03372 106 PTHAGKKTDLEAVAKACGLDNVAT-------------------------------------------------------- 129 (179)
T ss_pred CCCCCCCCCHHHHHHHcCCCeEEe--------------------------------------------------------
Confidence 221111346888899999998887
Q ss_pred hhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 348 EEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 348 ~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
+| +++++.+|+++|. ++|++|.++|.++.+
T Consensus 130 -------------~~-~~~el~~al~~a~---~gp~lIev~~~~~~~ 159 (179)
T cd03372 130 -------------VA-SEEAFEKAVEQAL---DGPSFIHVKIKPGNT 159 (179)
T ss_pred -------------cC-CHHHHHHHHHHhc---CCCEEEEEEEcCCCC
Confidence 44 7899999999987 589999999987665
No 73
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.09 E-value=5.7e-10 Score=115.71 Aligned_cols=120 Identities=23% Similarity=0.228 Sum_probs=90.2
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEE-EecCCCcccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMI-VNCNLQRLDGPV 267 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~v-vn~N~~~idg~v 267 (929)
.+|+||.|++.|+|.| ++. .+++|+|++|||++. +..+.|..|++.+++|+++| +||+.+.+.+..
T Consensus 46 ~~g~mG~~lpaAiGaa-----la~------p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~ 112 (188)
T cd03371 46 TVGSMGHASQIALGIA-----LAR------PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ 112 (188)
T ss_pred ecCccccHHHHHHHHH-----HhC------CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhccCCc
Confidence 3499999999999999 543 257899999999997 56678999999998776555 555555543321
Q ss_pred cccccchHHHHHHHhhCCceE-EEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHH
Q psy2375 268 RGNSKIIQELEAHFYGVGWNV-IKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKM 346 (929)
Q Consensus 268 ~~~~~~~~~l~~~f~~~Gw~v-i~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~ 346 (929)
... ...-++.+..+++||.. .+|
T Consensus 113 ~~~-~~~~d~~~~A~a~G~~~~~~v------------------------------------------------------- 136 (188)
T cd03371 113 PTV-SFDVSLPAIAKACGYRAVYEV------------------------------------------------------- 136 (188)
T ss_pred CCC-CCCCCHHHHHHHcCCceEEec-------------------------------------------------------
Confidence 111 11246788899999875 355
Q ss_pred HhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 347 IEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 347 v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
++++++.+++++|.+. ++|+||.++|.++.+
T Consensus 137 ----------------~~~~el~~al~~a~~~-~~p~lIev~~~~~~~ 167 (188)
T cd03371 137 ----------------PSLEELVAALAKALAA-DGPAFIEVKVRPGSR 167 (188)
T ss_pred ----------------CCHHHHHHHHHHHHhC-CCCEEEEEEecCCCC
Confidence 3788999999999875 789999999988776
No 74
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.07 E-value=3e-10 Score=130.43 Aligned_cols=74 Identities=39% Similarity=0.667 Sum_probs=70.5
Q ss_pred cccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+|+ +++|.|.+|++++||+|++||+|+++||||+.++|.||.+|+|.++++++|+.|.+|++|+.|++
T Consensus 2 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~ 76 (403)
T TIGR01347 2 EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEE 76 (403)
T ss_pred eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 456899984 99999999999999999999999999999999999999999999999999999999999999974
No 75
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.06 E-value=3.8e-10 Score=109.43 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=60.8
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
-..|+|.+|+++.||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 67 p~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 67 PMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999987
No 76
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.05 E-value=8.2e-10 Score=116.08 Aligned_cols=121 Identities=23% Similarity=0.266 Sum_probs=93.0
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc--
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP-- 266 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~-- 266 (929)
.-|+||.|++.|+|.+ ++. .+++|||++|||++.- +...|..|.+++|+-+++|+|||.+.+-..
T Consensus 46 ~~gsmG~~lpaAiGa~-----la~------p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q 112 (205)
T cd02003 46 GYSCMGYEIAAGLGAK-----LAK------PDREVYVLVGDGSYLM--LHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQ 112 (205)
T ss_pred CcchhhhHHHHHHHHH-----HhC------CCCeEEEEEccchhhc--cHHHHHHHHHcCCCCEEEEEECCccHHHHHHH
Confidence 3588999999999999 532 3678999999999995 556888899999998999999998865211
Q ss_pred ------cccc---c-----------cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhcccc
Q psy2375 267 ------VRGN---S-----------KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRS 326 (929)
Q Consensus 267 ------v~~~---~-----------~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~ 326 (929)
..+. . ...-++.+..+++|+...+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----------------------------------- 157 (205)
T cd02003 113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV----------------------------------- 157 (205)
T ss_pred HHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE-----------------------------------
Confidence 0000 0 01135677778888887776
Q ss_pred CCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 327 KNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 327 ~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
++++++.+|+++|.++ ++|+||.+.|.+...
T Consensus 158 ------------------------------------~~~~el~~al~~a~~~-~gp~lIeV~v~~~~~ 188 (205)
T cd02003 158 ------------------------------------KTIEELKAALAKAKAS-DRTTVIVIKTDPKSM 188 (205)
T ss_pred ------------------------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeecccc
Confidence 4799999999999876 789999999976543
No 77
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.03 E-value=1.3e-09 Score=111.62 Aligned_cols=88 Identities=24% Similarity=0.199 Sum_probs=65.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc--
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR-- 268 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~-- 268 (929)
|+||.+++.|+|.| ++. .+++|||++|||++..+ ..+|..|.+++++-+++|+|+|.+.+.....
T Consensus 49 g~mG~~lp~aiGaa-----la~------~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 49 GGLGWGLPAAVGAA-----LAN------PDRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred ccccchHHHHHHHH-----hcC------CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 89999999999999 432 26789999999999855 5789999999998777777777776542110
Q ss_pred ------------ccc--cchHHHHHHHhhCCceEEEE
Q psy2375 269 ------------GNS--KIIQELEAHFYGVGWNVIKV 291 (929)
Q Consensus 269 ------------~~~--~~~~~l~~~f~~~Gw~vi~v 291 (929)
... ...-++.+.++++|+...+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 152 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV 152 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe
Confidence 000 01246788888889888877
No 78
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.02 E-value=1.1e-09 Score=95.78 Aligned_cols=69 Identities=25% Similarity=0.506 Sum_probs=64.0
Q ss_pred ccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 857 VPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 857 l~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
++.++ .+.++.+.+|+++.||+|++||+|+.+|+||+..+|+||.+|+|.++.++.|+.|..|+.|+.|
T Consensus 4 ~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 4 IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45555 3678999999999999999999999999999999999999999999999999999999999875
No 79
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.02 E-value=4e-09 Score=105.80 Aligned_cols=163 Identities=19% Similarity=0.237 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhc-cCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchh
Q psy2375 496 TYAYVRILNTILRD-KNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAG 574 (929)
Q Consensus 496 r~af~~~L~~L~~~-~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~ 574 (929)
+.++++.|.++++. |. +.| +++|||..|.+|..+|..++--.. . ...|.|. .+.....||+++. ++|+.
T Consensus 1 ~~~lg~~l~dv~~~N~~-nfR--vf~PDEt~SNrL~~v~e~t~r~w~-~-~~~~~~~----~~~~~~~G~V~e~-LSEh~ 70 (179)
T PF03894_consen 1 TRVLGKYLRDVIKLNPR-NFR--VFGPDETASNRLNAVFEVTNRQWM-A-RILPPDD----DEHLAPGGRVMEV-LSEHQ 70 (179)
T ss_dssp HHHHHHHHHHHHHHSTT-TEE--EEESS-TTTTT-GGGGGT--EE---S-----TTT-----TTEESS-SEEE--S-HHH
T ss_pred CchHHHHHHHHHHhCCC-cce--eECCCcchhhchHHHHHhcccccc-c-ccCCCcc----hhhcccCCeeeee-cCHHH
Confidence 35678899998887 33 444 479999999999987754432100 0 1222211 1333445677755 99999
Q ss_pred hHHHHHHHHHHHhccCCCceEEEEeehhhH------------HHhHH-HHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 575 GMGSWIAAATSYSTSNCIMIPFFTFYSMFG------------LQRIG-DLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 575 ~~~~~iAag~g~A~~G~~~iPf~~~ys~F~------------~qR~~-d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
+.| |. -||.+.| -.-|+.+|-.|+ +.|.. ++-|.. ..+.+.++.|+..+..+.+|.||
T Consensus 71 c~G-~l---eGY~LtG--rhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~---~~~SlN~l~TS~~wrQdhNG~SH 141 (179)
T PF03894_consen 71 CQG-WL---EGYLLTG--RHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRA---PIPSLNYLLTSHVWRQDHNGFSH 141 (179)
T ss_dssp HHH-HH---HHHHHTT---EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS------B-EEEEEES-CCG-TTT-GGG
T ss_pred HHH-HH---HHHHhcC--CcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCC---CCcceeEEeeccceecCCCCccc
Confidence 777 42 3588888 788999999986 22222 222432 23456677798888899999999
Q ss_pred CChhhHHH-HhcCCC-cEEEccCCHHHHHHHHHHHHhh
Q psy2375 642 EDGHSHVL-ASTIPN-CIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 642 q~~ed~~l-~r~iPn-l~v~~Pada~E~~~~l~~al~~ 677 (929)
|+..-+.. +...|+ ++||.|+|++.+.+++..++++
T Consensus 142 QdPgfi~~~~~k~~~~~RvylPpDANtlLav~~~clrs 179 (179)
T PF03894_consen 142 QDPGFIDHVLNKKPDVVRVYLPPDANTLLAVMDHCLRS 179 (179)
T ss_dssp ---THHHHHHCC--T-EEEEE-SSHHHHHHHHHHHHH-
T ss_pred CCChHHHHHHhcCcccceeecCCcHhHHHHHHHHHhcC
Confidence 99887754 444555 6999999999999999999873
No 80
>PRK06163 hypothetical protein; Provisional
Probab=99.00 E-value=4.3e-09 Score=110.29 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=89.8
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHc-CCCeEEEEEecCCCccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAARE-KLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~-~L~nli~vvn~N~~~idg~v~ 268 (929)
.|+||.|++.|+|.+ |+. .+++|||++|||++. +....|..|++. +++=++||+||+.+.+.+...
T Consensus 56 ~GsMG~glpaAiGaa-----lA~------p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~ 122 (202)
T PRK06163 56 LGSMGLAFPIALGVA-----LAQ------PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQITGGQP 122 (202)
T ss_pred ecccccHHHHHHHHH-----HhC------CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCcc
Confidence 689999999999999 542 367899999999986 566788888766 566566677777777643221
Q ss_pred ccccchHHHHHHHhhCCce-EEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHH
Q psy2375 269 GNSKIIQELEAHFYGVGWN-VIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMI 347 (929)
Q Consensus 269 ~~~~~~~~l~~~f~~~Gw~-vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v 347 (929)
......-++.+..+++|+. ..+|
T Consensus 123 ~~~~~~~Df~~lA~a~G~~~~~~v-------------------------------------------------------- 146 (202)
T PRK06163 123 TLTSQTVDVVAIARGAGLENSHWA-------------------------------------------------------- 146 (202)
T ss_pred CCCCCCCCHHHHHHHCCCceEEEe--------------------------------------------------------
Confidence 1111123678888889986 5566
Q ss_pred hhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCc
Q psy2375 348 EEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLG 396 (929)
Q Consensus 348 ~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~ 396 (929)
.+++++..+++++.+. ++|+||.+++......+
T Consensus 147 ---------------~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 147 ---------------ADEAHFEALVDQALSG-PGPSFIAVRIDDKPGVG 179 (202)
T ss_pred ---------------CCHHHHHHHHHHHHhC-CCCEEEEEEecCCCCCC
Confidence 3678899999999876 78999999997665443
No 81
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.98 E-value=7.6e-10 Score=134.33 Aligned_cols=76 Identities=50% Similarity=0.759 Sum_probs=72.5
Q ss_pred eeccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 851 ~Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+.+..+|.+| +++|+|.+|++++||.|++||+|++||||||+++|+||.+|+|.++++++|+.|.+|++|+.|++
T Consensus 205 ~~~~~~~p~lg-~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~ 280 (633)
T PRK11854 205 GVKDVNVPDIG-GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEV 280 (633)
T ss_pred CceEEecCCCc-ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 35677899999 99999999999999999999999999999999999999999999999999999999999999964
No 82
>KOG0559|consensus
Probab=98.98 E-value=2.6e-10 Score=123.49 Aligned_cols=83 Identities=23% Similarity=0.452 Sum_probs=75.5
Q ss_pred hcceeheeccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEE
Q psy2375 845 FENIIHMKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQIL 923 (929)
Q Consensus 845 fgldae~Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~ 923 (929)
+.+-..+++....|.+++ +++|.+.+|.+++||.|++++.|++|||||+.++|.||.+|+|.+++|++||+|+.||.|+
T Consensus 65 ~~~~~ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la 144 (457)
T KOG0559|consen 65 ARVRSTSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLA 144 (457)
T ss_pred eeeeccceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeE
Confidence 334444577778888874 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q psy2375 924 ILEE 927 (929)
Q Consensus 924 ~i~~ 927 (929)
.|++
T Consensus 145 ~i~~ 148 (457)
T KOG0559|consen 145 KISP 148 (457)
T ss_pred EecC
Confidence 9975
No 83
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.97 E-value=1.2e-09 Score=109.09 Aligned_cols=63 Identities=32% Similarity=0.571 Sum_probs=60.9
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
-..|+|.+|+++.||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..||+|+.|
T Consensus 90 p~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 90 PMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999999987
No 84
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.96 E-value=4.1e-09 Score=109.03 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=88.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG---- 265 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg---- 265 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. +....|..|++++|+-+++|+|||.+.+-.
T Consensus 49 ~g~mG~~lp~aiGa~-----la~------~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 49 LGTMGFGLPAAIGAK-----VAR------PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred ccchhchHHHHHHHH-----HhC------CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 478999999999999 543 357899999999998 678889999999998777788888765321
Q ss_pred -----ccccccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 266 -----PVRGNSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 266 -----~v~~~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
....... ..-++.+..+++|+..++|
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------ 147 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV------------------------------------------------ 147 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHCCCceEEe------------------------------------------------
Confidence 1111000 1235677788888887776
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
+ +++++.+|+++|.+. ++|+||.++|.+
T Consensus 148 ---------------------~--~~~el~~al~~a~~~-~~p~liev~~~~ 175 (186)
T cd02015 148 ---------------------E--KPEELEAALKEALAS-DGPVLLDVLVDP 175 (186)
T ss_pred ---------------------C--CHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 2 478899999998875 789999999964
No 85
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.96 E-value=1.1e-09 Score=131.60 Aligned_cols=75 Identities=28% Similarity=0.532 Sum_probs=71.6
Q ss_pred ccccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 853 KIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+..+|.|| ++++|+|.+|++++||.|++||+||+|||||+.++|.||.+|+|.+|++++|+.|.+|++|++|+.
T Consensus 136 ~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 211 (590)
T TIGR02927 136 TDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGD 211 (590)
T ss_pred eEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 567899998 599999999999999999999999999999999999999999999999999999999999999964
No 86
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.96 E-value=3.5e-09 Score=120.13 Aligned_cols=120 Identities=21% Similarity=0.224 Sum_probs=91.6
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCC-Ccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNL-QRLDGPV 267 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~-~~idg~v 267 (929)
..|+||.+++.|+|.| |+. .+++|||+.|||++. +..++|..+++.++.|+++||-+|+ +...|..
T Consensus 219 ~~GsMG~a~p~AlG~a-----la~------p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q 285 (361)
T TIGR03297 219 TVGSMGHASQIALGLA-----LAR------PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQ 285 (361)
T ss_pred eechhhhHHHHHHHHH-----HHC------CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccccCCc
Confidence 3599999999999999 543 357899999999986 5567889999999878887666665 3433322
Q ss_pred cccccchHHHHHHHhhCCc-eEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHH
Q psy2375 268 RGNSKIIQELEAHFYGVGW-NVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKM 346 (929)
Q Consensus 268 ~~~~~~~~~l~~~f~~~Gw-~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~ 346 (929)
.... ..-++.+..+++|| .+++|
T Consensus 286 ~~~~-~~~d~~~iA~a~G~~~~~~v------------------------------------------------------- 309 (361)
T TIGR03297 286 PTVS-QHLDFAQIAKACGYAKVYEV------------------------------------------------------- 309 (361)
T ss_pred CCCC-CCCCHHHHHHHCCCceEEEe-------------------------------------------------------
Confidence 1111 13467888999998 45555
Q ss_pred HhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 347 IEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 347 v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
++.++|.+|+++|.+. ++|++|++++.+|.+
T Consensus 310 ----------------~~~~eL~~al~~a~~~-~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 310 ----------------STLEELETALTAASSA-NGPRLIEVKVRPGSR 340 (361)
T ss_pred ----------------CCHHHHHHHHHHHHhC-CCcEEEEEEecCCCc
Confidence 5889999999999876 789999999988765
No 87
>PRK07051 hypothetical protein; Validated
Probab=98.96 E-value=2e-09 Score=96.18 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=55.5
Q ss_pred eeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 870 TVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 870 ~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
.++++.||.|++||+++.+|+||+.++|.||.+|+|.++.+++|+.|..||+|+.++
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 499999999999999999999999999999999999999999999999999999986
No 88
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.96 E-value=1.1e-09 Score=109.96 Aligned_cols=70 Identities=27% Similarity=0.420 Sum_probs=61.1
Q ss_pred ccCcCC--ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 857 VPNIGD--LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 857 l~~LG~--i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-|+.|. .....-..|+++.||.|++||+||.||+|||.++|.||.+|+|.+++++.|+.|..||+|++|+
T Consensus 85 sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 85 SPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 444453 2334445699999999999999999999999999999999999999999999999999999884
No 89
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.96 E-value=4.1e-09 Score=106.23 Aligned_cols=116 Identities=22% Similarity=0.212 Sum_probs=88.2
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHc-CCCeEEEEEecCCCccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAARE-KLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~-~L~nli~vvn~N~~~idg~v~ 268 (929)
-|+||.|++.|+|.+ ++. +++|||++|||++. +....+..+++. +++=+++|+||+.+.+-+...
T Consensus 41 ~gsmG~~lp~AiGa~-----~a~-------~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~ 106 (157)
T cd02001 41 LGSMGLAGSIGLGLA-----LGL-------SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGSTGGQP 106 (157)
T ss_pred ecchhhHHHHHHHHH-----hcC-------CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCccccccCCcC
Confidence 899999999999999 421 27899999999995 444567788888 476445666888877544221
Q ss_pred ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHh
Q psy2375 269 GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIE 348 (929)
Q Consensus 269 ~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~ 348 (929)
.. ...-++.+..+++|+...+|
T Consensus 107 ~~-~~~~d~~~lA~a~G~~~~~v--------------------------------------------------------- 128 (157)
T cd02001 107 TP-SSNVNLEAWAAACGYLVLSA--------------------------------------------------------- 128 (157)
T ss_pred CC-CCCCCHHHHHHHCCCceEEc---------------------------------------------------------
Confidence 11 11346888899999998876
Q ss_pred hcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 349 EMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 349 ~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
++++++.+++++|.+. ++|++|.+++.++
T Consensus 129 --------------~~~~el~~al~~a~~~-~gp~vi~v~i~~~ 157 (157)
T cd02001 129 --------------PLLGGLGSEFAGLLAT-TGPTLLHAPIAPG 157 (157)
T ss_pred --------------CCHHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 4789999999999875 7899999998654
No 90
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.95 E-value=5.2e-09 Score=108.13 Aligned_cols=118 Identities=23% Similarity=0.260 Sum_probs=88.7
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|.| ++. .+++|+|++|||++. +....|..|.+++++.+++|+|||.+.+-....
T Consensus 48 ~~g~mG~~l~~aiGaa-----la~------~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~ 114 (183)
T cd02005 48 LWGSIGYSVPAALGAA-----LAA------PDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIERAIH 114 (183)
T ss_pred chhhHhhhHHHHHHHH-----HhC------CCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEEEEEec
Confidence 3589999999999999 543 257999999999995 455557789999999999999999987632111
Q ss_pred c-----cccchHHHHHHHhhCC----ceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 269 G-----NSKIIQELEAHFYGVG----WNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 269 ~-----~~~~~~~l~~~f~~~G----w~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
+ .....-++.+..+++| +..++|
T Consensus 115 ~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v------------------------------------------------ 146 (183)
T cd02005 115 GPEASYNDIANWNYTKLPEVFGGGGGGLSFRV------------------------------------------------ 146 (183)
T ss_pred cCCcCcccCCCCCHHHHHHHhCCCccccEEEe------------------------------------------------
Confidence 1 0001235677777887 455555
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
++++++.+|++++.+..++|+||.++|-
T Consensus 147 -----------------------~~~~el~~al~~a~~~~~~p~liev~~~ 174 (183)
T cd02005 147 -----------------------KTEGELDEALKDALFNRDKLSLIEVILP 174 (183)
T ss_pred -----------------------cCHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 5789999999999872378999999985
No 91
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.93 E-value=1.8e-09 Score=114.48 Aligned_cols=58 Identities=28% Similarity=0.508 Sum_probs=56.0
Q ss_pred eeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 870 TVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 870 ~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|+|+.||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|..|++|++|++
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 4999999999999999999999999999999999999999999999999999999863
No 92
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.93 E-value=2.4e-08 Score=120.90 Aligned_cols=251 Identities=18% Similarity=0.117 Sum_probs=156.5
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhh--hhcCCcEEEEeecCCeeecCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAG--DIRARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~--~~~~~~v~i~~t~~~~~~g~dG~t 640 (929)
+-++....+|..++.+ +.| -|..| .+.|..+-+ =|+..+.|.+...+ ....+-|++++ +| .+-++|
T Consensus 46 ~~~~~~~~~E~~a~~~--~~G--As~aG--~ra~t~ts~-~Gl~~~~e~l~~~~~~g~~~~iV~~~~--~~---~gp~~~ 113 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEV--AAG--AAWSG--LRAFCTMKH-VGLNVAADPLMTLAYTGVKGGLVVVVA--DD---PSMHSS 113 (595)
T ss_pred cEEEEECcCHHHHHHH--HHH--HHhcC--cceEEEccC-CchhhhHHHhhhhhhhcCcCceEEEEc--cC---CCCccc
Confidence 4556667799998876 333 44566 788876643 45677888654333 33444444443 33 233577
Q ss_pred CCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC----CCCCCCCCCCc--c---ccccc--
Q psy2375 641 HEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM----NENYSHPGLKK--G---QEKGI-- 709 (929)
Q Consensus 641 Hq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~----~e~~~~p~~~~--~---~~~~i-- 709 (929)
+....|+.+++. -++.|++|++..|+..+...|++--..=+-||+++++.. .++...+..+. . .....
T Consensus 114 ~~~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~ 192 (595)
T TIGR03336 114 QNEQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPER 192 (595)
T ss_pred hhhHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhh
Confidence 767777666554 377799999999999999988854211122476665321 11111111100 0 00000
Q ss_pred ---------------ccceEEEe----ccC-C--cCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccc
Q psy2375 710 ---------------IKGLYLLK----NHN-N--EKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLA 766 (929)
Q Consensus 710 ---------------~~G~y~l~----~g~-~--~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd 766 (929)
.+....+. +.. . ...+.|++||++|+++..++ |.+.| |+++.|+++++++|||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~----Gi~~~v~~~~~i~Pld 268 (595)
T TIGR03336 193 YVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL----GVDVSVLKIGFTYPVP 268 (595)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc----CCCeEEEEeCCCCCCC
Confidence 00000000 000 0 01246899999999999998 87765 9999999999999998
Q ss_pred cchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccC-CCcEEEEec-CcccccCChhhHHhh
Q psy2375 767 RDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPK-GRIYKVLGT-DGFGCSDTRKKLRDF 844 (929)
Q Consensus 767 ~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~-~~~~~~lG~-d~Fg~sgs~~~L~~~ 844 (929)
.+. +.++++++ ..||++|+|..++++.+..++.. +.++.++|. |+|.. +.
T Consensus 269 ~~~-------------------i~~~~~~~-~~vivvEe~~~~~~~~~~~~~~~~~~~v~~~G~~d~fi~--------~~ 320 (595)
T TIGR03336 269 EGL-------------------VEEFLSGV-EEVLVVEELEPVVEEQVKALAGTAGLNIKVHGKEDGFLP--------RE 320 (595)
T ss_pred HHH-------------------HHHHHhcC-CeEEEEeCCccHHHHHHHHHHHhcCCCeEEecccCCccC--------cc
Confidence 864 35677777 68999999987666767666553 136789999 78887 46
Q ss_pred hcceeheecccccc
Q psy2375 845 FENIIHMKKIIKVP 858 (929)
Q Consensus 845 fgldae~Iv~~al~ 858 (929)
.|||.+.|++++..
T Consensus 321 ~~Ld~~~i~~~i~~ 334 (595)
T TIGR03336 321 GELNPDIVVNALAK 334 (595)
T ss_pred cCcCHHHHHHHHHH
Confidence 77888877776654
No 93
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.93 E-value=1.7e-09 Score=129.04 Aligned_cols=76 Identities=47% Similarity=0.783 Sum_probs=72.5
Q ss_pred eccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 852 KKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 852 Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+....+|.+|++++|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 116 ~~~~~~P~~g~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 191 (546)
T TIGR01348 116 VQEVTVPDIGDIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSV 191 (546)
T ss_pred ceEEeCCCCCCcceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEec
Confidence 3577899998899999999999999999999999999999999999999999999999999999999999999963
No 94
>KOG0557|consensus
Probab=98.91 E-value=2e-09 Score=121.16 Aligned_cols=76 Identities=24% Similarity=0.444 Sum_probs=71.5
Q ss_pred eccccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCC-CcccCCCeEEEEee
Q psy2375 852 KKIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG-DKISKDSQILILEE 927 (929)
Q Consensus 852 Iv~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G-~~V~~G~~L~~i~~ 927 (929)
+...-+|.|. +|++|.|++|..++||.+++||+||+|||||..+++++..+|.+.+|++++| ..|.+|++||+|.+
T Consensus 38 h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive 115 (470)
T KOG0557|consen 38 HKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVE 115 (470)
T ss_pred ceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEec
Confidence 3556789995 8999999999999999999999999999999999999999999999999999 99999999999864
No 95
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.90 E-value=2.9e-09 Score=129.36 Aligned_cols=73 Identities=55% Similarity=0.897 Sum_probs=70.1
Q ss_pred cccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.|| +++|.|.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|++|++|++|+.
T Consensus 4 ~i~~P~lg-~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~ 76 (633)
T PRK11854 4 EIKVPDIG-ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFES 76 (633)
T ss_pred eEeeCCCC-CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEec
Confidence 45689999 99999999999999999999999999999999999999999999999999999999999999975
No 96
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.90 E-value=2.4e-09 Score=107.55 Aligned_cols=71 Identities=31% Similarity=0.497 Sum_probs=62.9
Q ss_pred cccCcCC--ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 856 KVPNIGD--LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 856 al~~LG~--i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
.-|+.|. .....-..|+++.||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..||+|++|+
T Consensus 83 ~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 83 TSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred eCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 3455564 3455566799999999999999999999999999999999999999999999999999999874
No 97
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.89 E-value=1.2e-08 Score=106.56 Aligned_cols=119 Identities=20% Similarity=0.154 Sum_probs=87.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc---
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP--- 266 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~--- 266 (929)
.++||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|++++|+=+++|+|||.+.+-..
T Consensus 52 ~g~mG~~lpaaiGa~-----la~------p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 52 FGNCGYALPAIIGAK-----AAA------PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CcccccHHHHHHHHH-----HhC------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 488999999999998 532 367899999999998 5678888899999985666669988764221
Q ss_pred ------ccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 267 ------VRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 267 ------v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
..+.....-++.+..+++|+...+|
T Consensus 119 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------- 149 (196)
T cd02013 119 DFYNNRFVGTELESESFAKIAEACGAKGITV------------------------------------------------- 149 (196)
T ss_pred HHcCCCcccccCCCCCHHHHHHHCCCEEEEE-------------------------------------------------
Confidence 0000001235667777777777666
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHh--CCCCCeEEEEeeecc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQK--NKDKPTVLLIKSIKG 392 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~--~~~~P~vI~~~T~KG 392 (929)
+++++|.+|+++|.+ ..++|+||.+++.+.
T Consensus 150 ----------------------~~~~el~~al~~a~~~~~~~~p~liev~v~~~ 181 (196)
T cd02013 150 ----------------------DKPEDVGPALQKAIAMMAEGKTTVIEIVCDQE 181 (196)
T ss_pred ----------------------CCHHHHHHHHHHHHhcCCCCCeEEEEEEeCcc
Confidence 368889999999876 137899999998643
No 98
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.88 E-value=1.3e-08 Score=105.03 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=63.3
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEE-ecCCCccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIV-NCNLQRLDGPVR 268 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vv-n~N~~~idg~v~ 268 (929)
.|+||.|++.|+|.+ ++ . +++|+|++|||++. +..+.+..|+++++.|+++|| ||+.+.+-+...
T Consensus 41 ~gsmG~~lpaAiGa~-----la-----~--~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~ 106 (181)
T TIGR03846 41 LGSMGLASSIGLGLA-----LA-----T--DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGSTGNQP 106 (181)
T ss_pred ccccccHHHHHHHHH-----Hc-----C--CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCccccccCcC
Confidence 799999999999999 42 2 57899999999998 455888899999964565555 555566544211
Q ss_pred ccccchHHHHHHHhhCCceEEE-E
Q psy2375 269 GNSKIIQELEAHFYGVGWNVIK-V 291 (929)
Q Consensus 269 ~~~~~~~~l~~~f~~~Gw~vi~-v 291 (929)
......-++.+..+++||.... |
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~~v 130 (181)
T TIGR03846 107 TPASRRTDLELVAKAAGIRNVEKV 130 (181)
T ss_pred CCCCCCCCHHHHHHHCCCCeEEEe
Confidence 1000123578889999998777 5
No 99
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.87 E-value=5.2e-09 Score=120.96 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=68.5
Q ss_pred cccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 856 KVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 856 al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+|.+| ++.+++|.+|++++||.|++||+|+++|+||+.+++.||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 2 ~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 74 (416)
T PLN02528 2 PLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMV 74 (416)
T ss_pred CCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 468887 499999999999999999999999999999999999999999999999999999999999999863
No 100
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.86 E-value=1.5e-08 Score=104.11 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=85.9
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc-----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD----- 264 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id----- 264 (929)
.|+||.+++.|+|.+ ++. .+++|+|++|||++.-. ...|..|.+++++=+++|+|||.+.+.
T Consensus 50 ~g~mG~~~~~aiGa~-----~a~------~~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~ 116 (178)
T cd02014 50 LATMGNGLPGAIAAK-----LAY------PDRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQE 116 (178)
T ss_pred CchhhhHHHHHHHHH-----HhC------CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHH
Confidence 489999999999988 432 35799999999999865 455788999999856667777766641
Q ss_pred ---ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 265 ---GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 265 ---g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
.+.-+......++.+..+++|+...++
T Consensus 117 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~v-------------------------------------------------- 146 (178)
T cd02014 117 VMGQPEFGVDLPNPDFAKIAEAMGIKGIRV-------------------------------------------------- 146 (178)
T ss_pred HhcCCceeccCCCCCHHHHHHHCCCeEEEe--------------------------------------------------
Confidence 111111111236778888888887776
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
.+++++.+++++|.+. ++|++|.++|.
T Consensus 147 ---------------------~~~~el~~~l~~a~~~-~~p~liev~~~ 173 (178)
T cd02014 147 ---------------------EDPDELEAALDEALAA-DGPVVIDVVTD 173 (178)
T ss_pred ---------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 2577888999998876 78999999985
No 101
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.86 E-value=8.8e-09 Score=87.69 Aligned_cols=62 Identities=34% Similarity=0.518 Sum_probs=59.2
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
..|.+.+|.++.|+.|++||+|+.+|++|+..+|+||.+|+|.++.++.|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 46888999999999999999999999999999999999999999999999999999999875
No 102
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.85 E-value=5.3e-09 Score=125.23 Aligned_cols=76 Identities=54% Similarity=0.827 Sum_probs=72.5
Q ss_pred eccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 852 KKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 852 Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+.+..+|.+|++++|+|.+|++++||.|++||.|+++|+||+.++|+||++|+|.++.+++|+.|.+|++|+.|+.
T Consensus 119 ~~~~~~P~~g~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~ 194 (547)
T PRK11855 119 VVEVKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEV 194 (547)
T ss_pred ceEEecCCCCCcceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 4577899998899999999999999999999999999999999999999999999999999999999999999864
No 103
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.84 E-value=4.7e-07 Score=109.76 Aligned_cols=464 Identities=15% Similarity=0.160 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCcEEEEEEcCCc-cCCcccHHHHHHHHHcCCC--eEEEEEecCCCcccccccccccchH
Q psy2375 199 TAIHQARFLKYLHARKITNTINRKIWILCGDGE-MDEPESISEISMAAREKLD--NLIMIVNCNLQRLDGPVRGNSKIIQ 275 (929)
Q Consensus 199 ~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe-~~eg~~~eAl~~A~~~~L~--nli~vvn~N~~~idg~v~~~~~~~~ 275 (929)
..-|.+||..-+-.+|- .+..-..+++-||++ ...|.+.|.||+|.-++++ -.|+||-+|++...++.... ..+.
T Consensus 627 VleGivRakQd~l~~g~-~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~-Rss~ 704 (1228)
T PRK12270 627 VLEGIVRAKQDRLDKGE-EGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESS-RSSE 704 (1228)
T ss_pred Hhhhhhhhhhhhhcccc-cCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcccc-ccch
Confidence 45588887654322211 122345567789999 5789999999999999986 38899999999887665431 2334
Q ss_pred HHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCcccc
Q psy2375 276 ELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDI 355 (929)
Q Consensus 276 ~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i 355 (929)
......++.+..++.|
T Consensus 705 y~td~ak~~~~PifhV---------------------------------------------------------------- 720 (1228)
T PRK12270 705 YATDVAKMIQAPIFHV---------------------------------------------------------------- 720 (1228)
T ss_pred hhHHHHhhcCCCEEeE----------------------------------------------------------------
Confidence 4555666788888888
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcC------CC
Q psy2375 356 WNLTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLK------LP 426 (929)
Q Consensus 356 ~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~------~p 426 (929)
||.|+++++.+.+.|.+. -++|+||-+.|++-+|+-+ +.++..+...-+-..++....|+.+. =.
T Consensus 721 -----NGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNE-gDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgd 794 (1228)
T PRK12270 721 -----NGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNE-GDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGD 794 (1228)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCC-CCCcccCCchhhhhhhhcchHHHHHHHHHhhcCC
Confidence 899999999999999874 2789999999999999854 22222211111112333333333320 12
Q ss_pred CCCcccccCC-CCCCCCCcHHHHH-HHHHHHHhCCCCCcccc-cccc--cccCCC---hH-------HHhhhhcccc---
Q psy2375 427 IPDSELSLVP-FYKPSKNSPEIQY-LKNCRKKLGGYLPKRRQ-KSDE--KLLIPP---LE-------AFKKILEPTL--- 488 (929)
Q Consensus 427 ~~d~~~~~~~-f~~~~~~~~~~~~-~~~~~~~l~g~~p~~~~-~~~~--~l~~P~---~~-------~f~~~~~~~~--- 488 (929)
+|++++++.- -| ..++.. ..+.|+......+.... .... +...++ .+ .+.....+..
T Consensus 795 it~ee~e~~l~dy-----~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 795 ITVEEAEQALRDY-----QGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred CCHHHHHHHHHHH-----HHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 4444332110 00 000000 01222222111110000 0000 000000 00 0111101110
Q ss_pred ------cc-Cccc----HHHHHHHHHH--HHHhccCCCCceeeeecCCCCCcCccccchhcccc-cccCcccccCChhhh
Q psy2375 489 ------NE-RKIS----TTYAYVRILN--TILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIF-SQVGQLYDPVDKDQV 554 (929)
Q Consensus 489 ------~~-~~~s----tr~af~~~L~--~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~-~~~gq~~~~~d~~~~ 554 (929)
.. ++++ .-=+|+++|. .|+.+ |..|-.-..|..|.+-.. |-.-++ ...|+-|+|-.
T Consensus 870 kl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~e---G~~VRL~GQDsrRGTF~Q---RHavl~D~~tg~e~~Pl~---- 939 (1228)
T PRK12270 870 KLKPLLEKRREMAREGGIDWAFGELLAFGSLLLE---GTPVRLSGQDSRRGTFSQ---RHAVLIDRETGEEYTPLQ---- 939 (1228)
T ss_pred hhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc---CceeeeeccccCCcceee---eeEEEecCCCCcccCcHh----
Confidence 00 0010 1115666655 55555 444444567877642111 112233 34688999963
Q ss_pred hHHHhhcCCc--eEeccccchhhHHHHHHHHHHHhccCCCceEEEE---eehhhH--HHhHHHHHHHhh----hhcCCcE
Q psy2375 555 IYYREEKNGQ--ILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT---FYSMFG--LQRIGDLAWLAG----DIRARGF 623 (929)
Q Consensus 555 ~~~~e~~~gR--~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~---~ys~F~--~qR~~d~i~~~~----~~~~~~v 623 (929)
...+ -.++ ++|.-++|.++|++ - -|||... --..+. -|.-|. .|-+-|+.-.++ .|+. ++
T Consensus 940 -~l~~-~q~~f~vydS~LSEyAa~GF--E--YGYSv~~--pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S-~v 1010 (1228)
T PRK12270 940 -NLSD-DQGKFLVYDSLLSEYAAMGF--E--YGYSVER--PDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRS-GV 1010 (1228)
T ss_pred -hcCC-CcceEEEecchhhHHHhhcc--c--eeeecCC--CcceeeehhhhcccccchHHHHHHHHhhhHhhhcccc-ce
Confidence 2212 2243 56999999998886 3 4577654 122333 333332 555555432222 2333 45
Q ss_pred EEEeecCCeeecCCCCCCCC--hhhHHHHhcCCCcEEEccCCHHHHHHHHH-HHHhhccCCCceEEEEEecCCCCCCCCC
Q psy2375 624 LIGGTSGRTTINGEGLQHED--GHSHVLASTIPNCIPYDPTFAHEVAIIIH-HGLHCMISNQEDVFYYITVMNENYSHPG 700 (929)
Q Consensus 624 ~i~~t~~~~~~g~dG~tHq~--~ed~~l~r~iPnl~v~~Pada~E~~~~l~-~al~~~~g~~~~v~~rl~~~~e~~~~p~ 700 (929)
.+.-.|| +.|.||-|-+ +|-...+.+-.||+|..|+.+...-++|+ +++..+.. |..+.-+++= .-++.
T Consensus 1011 vlLLPHG---yEGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~r---PLvVfTPKSm--LR~Ka 1082 (1228)
T PRK12270 1011 VLLLPHG---YEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRR---PLVVFTPKSM--LRLKA 1082 (1228)
T ss_pred EEEccCC---cCCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCC---CeEEEChHHh--hcchh
Confidence 5656774 6788999965 67677788889999999999999999997 56655322 3333222110 00010
Q ss_pred CCcccccccccceE--EEeccCCc-CCCCcEEEEEeChhHHHHHHHHHHhccCCCceEEEEcccccccccch
Q psy2375 701 LKKGQEKGIIKGLY--LLKNHNNE-KSKLKVQLIGSGAILREILASKILLQEWDIDSAVWSATSFTLLARDG 769 (929)
Q Consensus 701 ~~~~~~~~i~~G~y--~l~~g~~~-~~g~dv~Lia~G~~v~~alAAe~L~~~~GI~a~Vvsv~s~~pLd~~~ 769 (929)
- .+..+.+..|.+ +|.+.... ...-+=+|++||-+-.+-+|+. -+.. .-++-||-+-.+-||..+.
T Consensus 1083 A-~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R-~k~~-~~d~AIvRvEQLyP~p~~~ 1151 (1228)
T PRK12270 1083 A-VSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARR-EKDG-RDDTAIVRVEQLYPLPRAE 1151 (1228)
T ss_pred h-cCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHH-HhcC-CCceEEEEhhhhCCCCHHH
Confidence 0 011122333322 22221100 0112458999997776644332 2222 3468889988888886653
No 104
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.84 E-value=5.7e-09 Score=124.52 Aligned_cols=66 Identities=32% Similarity=0.458 Sum_probs=63.3
Q ss_pred CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 862 DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 862 ~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.-.+|.|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++.+++|+.|.+|++|+.|+.
T Consensus 530 apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 530 VAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred cCcceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999975
No 105
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.83 E-value=6e-09 Score=122.73 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=69.5
Q ss_pred ccccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC-cccCCCeEEEEe
Q psy2375 853 KIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD-KISKDSQILILE 926 (929)
Q Consensus 853 v~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~-~V~~G~~L~~i~ 926 (929)
.+..+|.+| ++++++|.+|++++||.|++||+|++|||||+.++|.||.+|+|.+|++++|+ .|.+|++|+++.
T Consensus 113 ~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 113 QEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred ceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 456789998 49999999999999999999999999999999999999999999999999996 799999999883
No 106
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.83 E-value=4.1e-07 Score=103.26 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=147.4
Q ss_pred hhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCC
Q psy2375 559 EEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEG 638 (929)
Q Consensus 559 e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG 638 (929)
....+.+++ .-+|..++++. .|.|..| .+.|..|-+. |+.-..+.+..++....|.|+++...++ .+-|
T Consensus 45 ~~~~~~~vq-~E~E~aA~~~a----~GAs~aG--~Ra~taTSg~-Gl~lm~E~l~~a~~~e~P~v~v~v~R~~---p~~g 113 (352)
T PRK07119 45 PEVGGVFVQ-AESEVAAINMV----YGAAATG--KRVMTSSSSP-GISLKQEGISYLAGAELPCVIVNIMRGG---PGLG 113 (352)
T ss_pred HHhCCEEEe-eCcHHHHHHHH----HHHHhhC--CCEEeecCcc-hHHHHHHHHHHHHHccCCEEEEEeccCC---CCCC
Confidence 345577888 79999988873 3345566 8888877444 4777788777777778888887665542 2234
Q ss_pred CCCCChhhHHHHhc-----CCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC----CCCCCCCCC---Ccc-c
Q psy2375 639 LQHEDGHSHVLAST-----IPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM----NENYSHPGL---KKG-Q 705 (929)
Q Consensus 639 ~tHq~~ed~~l~r~-----iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~----~e~~~~p~~---~~~-~ 705 (929)
.|+.+..|+.+.+. --++.+++|+|+.|+..+...|++--..-+-||+++.+.. .++...|.. ... .
T Consensus 114 ~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~ 193 (352)
T PRK07119 114 NIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPK 193 (352)
T ss_pred CCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCC
Confidence 57777777766542 2248999999999999999988864222233577665321 112111210 000 0
Q ss_pred cccc-ccc--e-EE---------------------E---ec--cCCc---CCCCcEEEEEeChhHHHHH-HHHHHhccCC
Q psy2375 706 EKGI-IKG--L-YL---------------------L---KN--HNNE---KSKLKVQLIGSGAILREIL-ASKILLQEWD 751 (929)
Q Consensus 706 ~~~i-~~G--~-y~---------------------l---~~--g~~~---~~g~dv~Lia~G~~v~~al-AAe~L~~~~G 751 (929)
...+ ..+ . .. + +. .... .++.|++||++|+++..++ |++.|+++ |
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~-G 272 (352)
T PRK07119 194 DWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREE-G 272 (352)
T ss_pred CCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHc-C
Confidence 0000 000 0 00 0 00 0000 1246899999999999999 99999988 9
Q ss_pred CceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhcc
Q psy2375 752 IDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIP 819 (929)
Q Consensus 752 I~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~ 819 (929)
+++.|+++++++||+.+. +.+.+++. +.||++|....-+...|+..+.
T Consensus 273 i~v~vi~~~~l~Pfp~~~-------------------i~~~l~~~-k~VivvE~n~g~l~~ei~~~~~ 320 (352)
T PRK07119 273 IKVGLFRPITLWPFPEKA-------------------LEELADKG-KGFLSVEMSMGQMVEDVRLAVN 320 (352)
T ss_pred CeEEEEeeceecCCCHHH-------------------HHHHHhCC-CEEEEEeCCccHHHHHHHHHhC
Confidence 999999999999998764 35666776 6899999875446666765544
No 107
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.82 E-value=2.6e-08 Score=102.42 Aligned_cols=62 Identities=29% Similarity=0.300 Sum_probs=52.1
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
..|+||.|++.|+|.+ ++. .+++|||++|||++. ++...|..|.+++|+=+++|+|||.+.+
T Consensus 46 ~~g~mG~~lp~aiGa~-----la~------~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~ 107 (177)
T cd02010 46 GLATMGVALPGAIGAK-----LVY------PDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGL 107 (177)
T ss_pred CChhhhhHHHHHHHHH-----HhC------CCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchH
Confidence 3578999999999999 532 367899999999996 7778888899999997778888887754
No 108
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.79 E-value=1.7e-08 Score=100.88 Aligned_cols=117 Identities=24% Similarity=0.239 Sum_probs=88.5
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccc
Q psy2375 188 FPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPV 267 (929)
Q Consensus 188 f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v 267 (929)
...++||.+++.|+|.+ ++. ++++|||++|||++. .+..+|..|.+.+++=+++|+||+.+.+-+..
T Consensus 25 ~~~g~mG~~~~~aiGa~-----~a~------p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~ 91 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAA-----LAR------PDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYGMTGGQ 91 (153)
T ss_dssp TTTT-TTTHHHHHHHHH-----HHS------TTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSHHHHHH
T ss_pred CCccccCCHHHhhhHHH-----hhc------CcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcceEeccc
Confidence 35789999999999999 431 368999999999998 55888999999999877777888776542111
Q ss_pred ----c-----ccc---cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhh
Q psy2375 268 ----R-----GNS---KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKN 335 (929)
Q Consensus 268 ----~-----~~~---~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~ 335 (929)
. ... ...-++....+++|....+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-------------------------------------------- 127 (153)
T PF02775_consen 92 QTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARV-------------------------------------------- 127 (153)
T ss_dssp HHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEE--------------------------------------------
T ss_pred cccCcCcccccccccccccCCHHHHHHHcCCcEEEE--------------------------------------------
Confidence 0 000 12346888889999988877
Q ss_pred ccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEE
Q psy2375 336 FFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLI 387 (929)
Q Consensus 336 ~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~ 387 (929)
+-.|++++.+++++|.+. ++|+||.+
T Consensus 128 -------------------------~~~~~~el~~al~~a~~~-~gp~vIeV 153 (153)
T PF02775_consen 128 -------------------------TTPDPEELEEALREALES-GGPAVIEV 153 (153)
T ss_dssp -------------------------SCHSHHHHHHHHHHHHHS-SSEEEEEE
T ss_pred -------------------------ccCCHHHHHHHHHHHHhC-CCcEEEEc
Confidence 334679999999999976 78999975
No 109
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.76 E-value=1.7e-08 Score=117.27 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=69.1
Q ss_pred ccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCc-ccCCCeEEEEee
Q psy2375 855 IKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK-ISKDSQILILEE 927 (929)
Q Consensus 855 ~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~-V~~G~~L~~i~~ 927 (929)
..+|.+| +++++.|.+|++++||.|++||+||+||+||+.++|.||.+|+|.++.+++|+. |.+|++|++|+.
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~ 76 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVE 76 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEec
Confidence 3578888 499999999999999999999999999999999999999999999999999999 999999999953
No 110
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.75 E-value=4.8e-08 Score=102.45 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=51.7
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ |+. .+++|||++|||++. ++...|..|.+++|+=+++|+||+.+.+
T Consensus 56 ~GsmG~~lpaaiGa~-----la~------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~yg~ 116 (202)
T cd02006 56 AGPLGWTVPAALGVA-----AAD------PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGL 116 (202)
T ss_pred ccchhhhhHHHHhHH-----hhC------CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchHHH
Confidence 489999999999999 543 367999999999998 7788999999999997777777776654
No 111
>PRK08266 hypothetical protein; Provisional
Probab=98.75 E-value=5e-08 Score=117.04 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=90.1
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc-----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD----- 264 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id----- 264 (929)
.|+||.|++.|+|.+ ++. ++++|||++|||++.-. ..+|..|.+++|+-+++|+|||.+.+-
T Consensus 401 ~GsmG~~lp~aiGa~-----la~------p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~ 467 (542)
T PRK08266 401 QGTLGYGFPTALGAK-----VAN------PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQK 467 (542)
T ss_pred CcccccHHHHHHHHH-----HhC------CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHH
Confidence 389999999999998 532 46789999999999964 789999999999988889999987531
Q ss_pred ----ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 265 ----GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 265 ----g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+...+.....-++.+..+++|....+|
T Consensus 468 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v------------------------------------------------- 498 (542)
T PRK08266 468 RRFGGRVVASDLVNPDFVKLAESFGVAAFRV------------------------------------------------- 498 (542)
T ss_pred HhcCCCcccCCCCCCCHHHHHHHcCCeEEEe-------------------------------------------------
Confidence 211111000125666677777776665
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
.+.+++.+|+++|.+. ++|+||.++|.++.
T Consensus 499 ----------------------~~~~el~~al~~a~~~-~~p~liev~i~~~~ 528 (542)
T PRK08266 499 ----------------------DSPEELRAALEAALAH-GGPVLIEVPVPRGS 528 (542)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCcEEEEEEecCCC
Confidence 2578899999998875 68999999998764
No 112
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.74 E-value=1.4e-08 Score=116.51 Aligned_cols=65 Identities=26% Similarity=0.402 Sum_probs=62.5
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-.+|.|+.+.|+.|++|.+||+|+++|+|||++.|+||.+|+|+++.+++|+.|..|++|+++++
T Consensus 581 PMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 581 PMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999863
No 113
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.72 E-value=5.2e-08 Score=100.16 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=105.3
Q ss_pred ccccccccceEEEeccCCc-CCCCcEEEEEeChhH-HHHH-HHHHHhccC-CCceEEEEcccccccccchhhhhhhhccC
Q psy2375 704 GQEKGIIKGLYLLKNHNNE-KSKLKVQLIGSGAIL-REIL-ASKILLQEW-DIDSAVWSATSFTLLARDGQETERWNMLH 779 (929)
Q Consensus 704 ~~~~~i~~G~y~l~~g~~~-~~g~dv~Lia~G~~v-~~al-AAe~L~~~~-GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~ 779 (929)
.....+.+|+.++...+.+ +..+||+|.++|.+. .|+| |+++|++.+ +++++||||..+.-|.... .|
T Consensus 12 eA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~--------~h 83 (203)
T PF09363_consen 12 EARAHCAAGAGIWDWASTDQGEEPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPS--------EH 83 (203)
T ss_dssp HHHHHHHHSEEE-CCC-SSSTTT-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TT--------T-
T ss_pred HHHHHHHcCCeEEEeccCCCCCCCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCC--------CC
Confidence 3445677898888875532 335799999999988 8999 999999866 8999999999998886654 59
Q ss_pred CCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCC---CcEEEEecCcccccCChhhHHhhhcceeheecccc
Q psy2375 780 PTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKG---RIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIK 856 (929)
Q Consensus 780 p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~---~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~a 856 (929)
|....+.+| ++++... .|||. .++||+..|...+.++ .++.+.|..+-|...|+-+++-.+++|..+++..+
T Consensus 84 Phglsd~~F-d~lFT~D-kPViF---afHGYp~~i~~L~~~R~n~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~da 158 (203)
T PF09363_consen 84 PHGLSDEEF-DALFTKD-KPVIF---AFHGYPWLIHRLLFGRPNHDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDA 158 (203)
T ss_dssp TTS--HHHH-HHHH-SS-S-EEE---EESSEHHHHHHHTTTSTTGGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHH
T ss_pred CCcCCHHHH-HHhcCCC-CCEEE---EcCCCHHHHHHHhcCCCCCCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHH
Confidence 999988888 7899776 89998 6789999999998862 57999999999999999999999999999988776
Q ss_pred ccCc
Q psy2375 857 VPNI 860 (929)
Q Consensus 857 l~~L 860 (929)
+..+
T Consensus 159 i~~~ 162 (203)
T PF09363_consen 159 IRRV 162 (203)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6555
No 114
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.72 E-value=5.4e-08 Score=116.50 Aligned_cols=90 Identities=26% Similarity=0.224 Sum_probs=67.9
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc---
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG--- 265 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg--- 265 (929)
..|+||.|++.|+|.+ |+. .+++|+|++|||++..+ .++|..|.+++|+-+++|+|||.+.+..
T Consensus 405 ~~g~mG~~lp~aiGa~-----la~------p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~ 471 (530)
T PRK07092 405 ASGGLGYGLPAAVGVA-----LAQ------PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFA 471 (530)
T ss_pred CCCcccchHHHHHHHH-----HhC------CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Confidence 4699999999999999 532 25799999999999965 6899999999999778888888776421
Q ss_pred ------cccccccchHHHHHHHhhCCceEEEE
Q psy2375 266 ------PVRGNSKIIQELEAHFYGVGWNVIKV 291 (929)
Q Consensus 266 ------~v~~~~~~~~~l~~~f~~~Gw~vi~v 291 (929)
+..+.....-++.+..+++|+...+|
T Consensus 472 ~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v 503 (530)
T PRK07092 472 PVFGVRDVPGLDLPGLDFVALARGYGCEAVRV 503 (530)
T ss_pred HhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEe
Confidence 11111111245778888888888777
No 115
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.71 E-value=3.5e-08 Score=114.42 Aligned_cols=75 Identities=39% Similarity=0.616 Sum_probs=70.7
Q ss_pred ccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 853 KIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+..+|.+|+ +.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++.+++|+.|.+|++|+.|+.
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~ 78 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEE 78 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEec
Confidence 3567888984 99999999999999999999999999999999999999999999999999999999999999863
No 116
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.69 E-value=3.2e-08 Score=115.60 Aligned_cols=74 Identities=24% Similarity=0.417 Sum_probs=69.7
Q ss_pred cccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC-cccCCCeEEEEee
Q psy2375 854 IIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD-KISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~-~V~~G~~L~~i~~ 927 (929)
+..+|.+| +++++++.+|++++||.|++||+|++|||||++++|.||.+|+|.++.+++|+ .|.+|++|++|+.
T Consensus 4 ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~ 79 (464)
T PRK11892 4 EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLE 79 (464)
T ss_pred ceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEcc
Confidence 56788897 59999999999999999999999999999999999999999999999999995 7999999999964
No 117
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.69 E-value=6.3e-08 Score=99.29 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=85.3
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRG 269 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~ 269 (929)
.+.||.|++.|+|.+ ++ . +++|||++|||++. ++...|..|.+++++=+++|+||+.+.+-.....
T Consensus 50 ~g~mG~~l~~aiGa~-----la-----~--~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~ 115 (175)
T cd02009 50 ASGIDGTLSTALGIA-----LA-----T--DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQ 115 (175)
T ss_pred ccchhhHHHHHHHHH-----hc-----C--CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchheeccC
Confidence 367999999999999 42 2 57899999999998 6678898999999987788888887654211100
Q ss_pred -------cccc----hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 270 -------NSKI----IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 270 -------~~~~----~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
.... .-+..+..+++|+...+|
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----------------------------------------------- 148 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRV----------------------------------------------- 148 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHHcCCCeeeC-----------------------------------------------
Confidence 0000 125667777777777666
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
++++++.+++++|.+. ++|++|.+.+
T Consensus 149 ------------------------~~~~el~~al~~a~~~-~~p~lIev~v 174 (175)
T cd02009 149 ------------------------SSLDELEQALESALAQ-DGPHVIEVKT 174 (175)
T ss_pred ------------------------CCHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 3789999999999875 7899999875
No 118
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.68 E-value=2.7e-08 Score=128.06 Aligned_cols=64 Identities=25% Similarity=0.427 Sum_probs=61.4
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
--.|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++++++|+.|.+||+|+.|+
T Consensus 1138 ~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1138 EYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 3568999999999999999999999999999999999999999999999999999999999885
No 119
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.66 E-value=1.4e-07 Score=103.99 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=56.2
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
-.+.+|.+++.|.|.+++.+++ ...+..|++|+|||.+.++- ++++++|+.+++| ++|||.||....
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~------~~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~-v~~vv~dN~~~~ 133 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKAR------GEKGVIVVGWAGDGGTADIG-FQALSGAAERNHD-ILYIMYDNEAYM 133 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhh------CCCCcEEEEEEccCcccccc-HHHHHHHHHhCcC-EEEEEECCeeee
Confidence 3677999999999999988763 22346788899999998887 4999999999986 999999997654
No 120
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.64 E-value=4.1e-06 Score=96.03 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=141.0
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t 640 (929)
..+.+++.- +|..++++.+ |-|..| .+.|..|-+. |+.-..+.++.++....|-|++...-++- +..-+|
T Consensus 47 ~~~~~vq~E-~E~aA~~~a~----GAs~aG--~Ra~TaTSg~-Gl~lm~E~~~~a~~~e~P~Viv~~~R~gp--~tg~p~ 116 (376)
T PRK08659 47 VGGVFIQME-DEIASMAAVI----GASWAG--AKAMTATSGP-GFSLMQENIGYAAMTETPCVIVNVQRGGP--STGQPT 116 (376)
T ss_pred hCCEEEEeC-chHHHHHHHH----hHHhhC--CCeEeecCCC-cHHHHHHHHHHHHHcCCCEEEEEeecCCC--CCCCCC
Confidence 447888887 9999888733 344566 7777766443 45566777866666677777766554432 122356
Q ss_pred CCChhhHHHHh-----cCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC----CCCCCCCCC---C------
Q psy2375 641 HEDGHSHVLAS-----TIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM----NENYSHPGL---K------ 702 (929)
Q Consensus 641 Hq~~ed~~l~r-----~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~----~e~~~~p~~---~------ 702 (929)
+.+..|+...+ -.| ..|+.|++..|+..+...|++--..-+-||+++.... .++...|.. +
T Consensus 117 ~~~q~D~~~~~~~~hgd~~-~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~ 195 (376)
T PRK08659 117 KPAQGDMMQARWGTHGDHP-IIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKL 195 (376)
T ss_pred CcCcHHHHHHhcccCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhcccccccc
Confidence 66666665554 222 5899999999999999988864221122466654321 112111110 0
Q ss_pred -c-------cc---cccc------ccceE-EEe---------------------------------c-cCC---cCCCCc
Q psy2375 703 -K-------GQ---EKGI------IKGLY-LLK---------------------------------N-HNN---EKSKLK 727 (929)
Q Consensus 703 -~-------~~---~~~i------~~G~y-~l~---------------------------------~-g~~---~~~g~d 727 (929)
. .. ..++ ..|.+ .++ + ..- +-++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad 275 (376)
T PRK08659 196 PKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAE 275 (376)
T ss_pred CCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCC
Confidence 0 00 0000 00111 000 0 000 012468
Q ss_pred EEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecc
Q psy2375 728 VQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDY 806 (929)
Q Consensus 728 v~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~ 806 (929)
+.||++|++...++ |++.|+++ |+++.|+++.+++||+.+. +.+++++. ..|+++|++
T Consensus 276 ~~iv~~Gs~~~~a~eAv~~Lr~~-G~~v~~l~~~~l~Pfp~~~-------------------i~~~~~~~-k~VivvEe~ 334 (376)
T PRK08659 276 VVVVAYGSVARSARRAVKEAREE-GIKVGLFRLITVWPFPEEA-------------------IRELAKKV-KAIVVPEMN 334 (376)
T ss_pred EEEEEeCccHHHHHHHHHHHHhc-CCceEEEEeCeecCCCHHH-------------------HHHHHhcC-CEEEEEeCC
Confidence 99999999999999 99999998 9999999999999998754 35667776 689999999
Q ss_pred cchhHHHHHhhcc
Q psy2375 807 MRLFAEQVRAFIP 819 (929)
Q Consensus 807 ~~~~~~~i~~~l~ 819 (929)
...+...++..+.
T Consensus 335 ~g~l~~el~~~~~ 347 (376)
T PRK08659 335 LGQMSLEVERVVN 347 (376)
T ss_pred HHHHHHHHHHHhC
Confidence 5444455555544
No 121
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.63 E-value=6.7e-08 Score=115.49 Aligned_cols=73 Identities=53% Similarity=0.772 Sum_probs=69.1
Q ss_pred ccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 855 ~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+|.+|...+|+|++|+++.||.|++||+|++||+|||.++|.|+.+|+|.++.+++|+.|..|++|+.|+.
T Consensus 3 i~~p~lg~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 3 IKVPDIGDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred eecCCCCCCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 4578888668999999999999999999999999999999999999999999999999999999999999863
No 122
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.63 E-value=5.6e-08 Score=116.59 Aligned_cols=66 Identities=30% Similarity=0.431 Sum_probs=62.5
Q ss_pred CCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 861 GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 861 G~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+.-.+|.|.+|.|++||.|++||+|++||+|||+.+|.||.+|+|.++.+++|+.|..|++|+.|.
T Consensus 528 ~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 528 TAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred ECCccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 345689999999999999999999999999999999999999999999999999999999999874
No 123
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.62 E-value=4e-08 Score=117.70 Aligned_cols=62 Identities=34% Similarity=0.440 Sum_probs=59.1
Q ss_pred CCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeE
Q psy2375 861 GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQI 922 (929)
Q Consensus 861 G~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L 922 (929)
+.-.+|.|.+|.|++||+|++||+|++||+|||+++|.||.+|+|.++.+++|+.|.+|++|
T Consensus 521 ~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 521 TAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred eCCccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999975
No 124
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.61 E-value=3.2e-07 Score=98.57 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=45.9
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCC
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNL 260 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~ 260 (929)
+.++||.|++.|+|.+ ++ ..+++|||++|||++ -.+....|..|++.+++ +++||-||.
T Consensus 60 ~~gsmG~GlpaAiGa~-----~a------~p~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~p-v~~vVlNN~ 118 (235)
T cd03376 60 NAAAVASGIEAALKAL-----GR------GKDITVVAFAGDGGT-ADIGFQALSGAAERGHD-ILYICYDNE 118 (235)
T ss_pred CHHHHHHHHHHHHHHh-----cc------CCCCeEEEEEcCchH-HhhHHHHHHHHHHcCCC-eEEEEECCc
Confidence 4579999999999976 32 246789999999995 22668889999999997 666555553
No 125
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.60 E-value=6.8e-08 Score=123.33 Aligned_cols=66 Identities=27% Similarity=0.480 Sum_probs=62.7
Q ss_pred CCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 861 GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 861 G~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+.-.+|.|.+|.|++||+|++||+|++||+|||+++|.||.+|+|.++.+++|+.|+.|++|++|+
T Consensus 1078 ~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1078 GAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred ecCCCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 345789999999999999999999999999999999999999999999999999999999999884
No 126
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.60 E-value=2.2e-07 Score=112.44 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=85.7
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc------
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL------ 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i------ 263 (929)
.++||.|++.|+|.+ |++ .+++|+||+|||++. +....|+.|.+++|+=++||+||+.+.+
T Consensus 436 ~gsmG~~l~~aiGa~-----la~------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~ 502 (578)
T PRK06112 436 LAGLGWGVPMAIGAK-----VAR------PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAET 502 (578)
T ss_pred ccccccHHHHHHHHH-----hhC------CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccc
Confidence 378999999999998 532 357899999999996 7889999999999985556666653321
Q ss_pred ---cccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 264 ---DGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 264 ---dg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
.+.........-++.+..+++|....+|
T Consensus 503 ~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v------------------------------------------------- 533 (578)
T PRK06112 503 VKFGTHTDACHFAAVDHAAIARACGCDGVRV------------------------------------------------- 533 (578)
T ss_pred cccCCccccCcCCCCCHHHHHHHCCCeEEEe-------------------------------------------------
Confidence 1111111001235677778888877776
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++++++.+|+++|.+. ++|+||+++|-+
T Consensus 534 ----------------------~~~~el~~al~~a~~~-~gp~lIev~~~~ 561 (578)
T PRK06112 534 ----------------------EDPAELAQALAAAMAA-PGPTLIEVITDP 561 (578)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEcCc
Confidence 3678899999999875 789999999954
No 127
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.59 E-value=9.7e-08 Score=114.50 Aligned_cols=74 Identities=51% Similarity=0.779 Sum_probs=69.1
Q ss_pred cccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+|.+.+|+|.+|+++.||.|++||+|++||+||+.++|.||.+|+|.++.+++|+.|..|++|+.|++
T Consensus 4 ~i~~p~~g~~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~ 77 (547)
T PRK11855 4 EFKVPDIGEVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA 77 (547)
T ss_pred eeecCCcCCCceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence 45677786688999999999999999999999999999999999999999999999999999999999999863
No 128
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.59 E-value=3e-07 Score=111.52 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc-------
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL------- 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i------- 263 (929)
|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 437 gsmG~glpaaiGa~-----lA~------p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~ 503 (587)
T PRK06965 437 GTMGVGLPYAMGIK-----MAH------PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEI 503 (587)
T ss_pred ccccchHHHHHHHH-----HhC------CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHH
Confidence 79999999999999 543 367899999999998 7789999999999997777777776643
Q ss_pred --ccccccccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 264 --DGPVRGNSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 264 --dg~v~~~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+++...... ..-++.+..+++|....+|
T Consensus 504 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v------------------------------------------------- 534 (587)
T PRK06965 504 EYSKRYSHSYMDALPDFVKLAEAYGHVGMRI------------------------------------------------- 534 (587)
T ss_pred hcCCCccccCCCCCCCHHHHHHHCCCEEEEE-------------------------------------------------
Confidence 111111000 1124556666666666555
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++.++|.+|+++|.++.++|+||.+.+.+
T Consensus 535 ----------------------~~~~eL~~al~~a~~~~~~p~lieV~i~~ 563 (587)
T PRK06965 535 ----------------------EKTSDVEPALREALRLKDRTVFLDFQTDP 563 (587)
T ss_pred ----------------------CCHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 47889999999998755789999999964
No 129
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.59 E-value=4.1e-07 Score=94.91 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=49.2
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
++||.|++.|+|.+ ++. .+++|||++|||++ -.+....|..|.+++++=+++|+||+.+..
T Consensus 51 g~mG~glpaAiGa~-----la~------p~r~Vv~i~GDGs~-f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~ 111 (193)
T cd03375 51 TLHGRALAVATGVK-----LAN------PDLTVIVVSGDGDL-AAIGGNHFIHAARRNIDITVIVHNNQIYGL 111 (193)
T ss_pred hhhccHHHHHHHHH-----HhC------CCCeEEEEeccchH-hhccHHHHHHHHHhCCCeEEEEEcCccccc
Confidence 88999999999999 532 36899999999994 135678889999999986667777777665
No 130
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.58 E-value=2.7e-07 Score=111.14 Aligned_cols=118 Identities=24% Similarity=0.246 Sum_probs=86.0
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc----
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD---- 264 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id---- 264 (929)
..|+||.|++.|+|.+ ++. .+++|+||+|||++. +....|..|.+++|+=+++|+||+.+.+-
T Consensus 413 ~~g~mG~glpaaiGa~-----la~------p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~ 479 (557)
T PRK08199 413 TSGSMGYGLPAAIAAK-----LLF------PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQ 479 (557)
T ss_pred CCccccchHHHHHHHH-----HhC------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHH
Confidence 3589999999999998 532 367899999999998 77889999999999744455555545421
Q ss_pred -----ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 265 -----GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 265 -----g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
++..+.....-++.+..+++|+....|
T Consensus 480 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------ 511 (557)
T PRK08199 480 EREYPGRVSGTDLTNPDFAALARAYGGHGETV------------------------------------------------ 511 (557)
T ss_pred HHhcCCccccccCCCCCHHHHHHHCCCeEEEe------------------------------------------------
Confidence 111111001125677777788777766
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.+++++.++++++.+. ++|+||.++|-+
T Consensus 512 -----------------------~~~~el~~al~~a~~~-~gp~li~v~~~~ 539 (557)
T PRK08199 512 -----------------------ERTEDFAPAFERALAS-GKPALIEIRIDP 539 (557)
T ss_pred -----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCH
Confidence 2678899999998875 789999999964
No 131
>KOG0558|consensus
Probab=98.57 E-value=4.5e-08 Score=105.78 Aligned_cols=78 Identities=31% Similarity=0.368 Sum_probs=73.9
Q ss_pred eeccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 851 MKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 851 ~Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
.+++..+..+|+ +.+.+|.+|+|++||+|++=|.||++++||+.++|.+.++|+|++|..+.++...+|++|..++.+
T Consensus 63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve 141 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVE 141 (474)
T ss_pred ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeec
Confidence 378888889986 999999999999999999999999999999999999999999999999999999999999998753
No 132
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.57 E-value=1.1e-07 Score=114.57 Aligned_cols=74 Identities=34% Similarity=0.594 Sum_probs=70.0
Q ss_pred cccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+| .+.+++|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++.+++|+.|.+|++|++|+.
T Consensus 4 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 4 SVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred eEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 46788898 599999999999999999999999999999999999999999999999999999999999998863
No 133
>PRK07524 hypothetical protein; Provisional
Probab=98.56 E-value=3.2e-07 Score=110.05 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=87.4
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc-----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD----- 264 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id----- 264 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. +....|..|.+++|+=++||+||+.+.+-
T Consensus 406 ~g~mG~~lp~aiGa~-----lA~------p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~ 472 (535)
T PRK07524 406 YGTLGYGLPAAIGAA-----LGA------PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYGEIRRYMV 472 (535)
T ss_pred cccccchHHHHHHHH-----HhC------CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchHHHHHHHH
Confidence 389999999999999 543 367999999999997 66777999999999967777777777521
Q ss_pred ---ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 265 ---GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 265 ---g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
.+..++....-++.+..+++|.....|
T Consensus 473 ~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v-------------------------------------------------- 502 (535)
T PRK07524 473 ARDIEPVGVDPYTPDFIALARAFGCAAERV-------------------------------------------------- 502 (535)
T ss_pred HhcCCccccCCCCCCHHHHHHHCCCcEEEe--------------------------------------------------
Confidence 011111001124555566666555554
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
.+++++.+|+++|.+. ++|+||.+++.+-.|
T Consensus 503 ---------------------~~~~el~~al~~a~~~-~~p~liev~~~~~~~ 533 (535)
T PRK07524 503 ---------------------ADLEQLQAALRAAFAR-PGPTLIEVDQACWFA 533 (535)
T ss_pred ---------------------CCHHHHHHHHHHHHhC-CCCEEEEEECCcccc
Confidence 2788999999999886 789999999987544
No 134
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.55 E-value=4.3e-07 Score=109.73 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=50.7
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++.-+..-.++..|.+++|+-++||+||+.+.+
T Consensus 429 ~gsmG~~lp~aiGa~-----la~------p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~ 491 (569)
T PRK08327 429 AGGLGWALGAALGAK-----LAT------PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLA 491 (569)
T ss_pred CCCCCcchHHHHHHh-----hcC------CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccccc
Confidence 389999999999988 532 468999999999998775455789999999986666777766643
No 135
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.53 E-value=4.6e-07 Score=109.64 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=86.1
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc----
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD---- 264 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id---- 264 (929)
.-|+||.|++.|+|.+ ++. .+++|+|++|||++. +....|..|.+++|+=++||+||+.+.+-
T Consensus 406 ~~gsmG~~~paAiGa~-----la~------p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q 472 (578)
T PRK06546 406 RHGSMANALPHAIGAQ-----LAD------PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEM 472 (578)
T ss_pred CcccccchhHHHHHHH-----HhC------CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCccccHHHHH
Confidence 4589999999999999 543 357899999999999 56778999999999866666777665531
Q ss_pred ---c-cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 265 ---G-PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 265 ---g-~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+ +..+.....-++.+..+++|....+|
T Consensus 473 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v------------------------------------------------- 503 (578)
T PRK06546 473 LVDGLPDFGTDHPPVDYAAIAAALGIHAVRV------------------------------------------------- 503 (578)
T ss_pred HhcCCCcccccCCCCCHHHHHHHCCCeeEEe-------------------------------------------------
Confidence 1 11111001124556666666655554
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
.++++|.+|+++|.+. ++|+||.++|-+.
T Consensus 504 ----------------------~~~~el~~al~~a~~~-~gp~lIev~~~~~ 532 (578)
T PRK06546 504 ----------------------EDPKDVRGALREAFAH-PGPALVDVVTDPN 532 (578)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCCC
Confidence 3789999999999875 7899999998543
No 136
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.53 E-value=1.4e-07 Score=113.34 Aligned_cols=66 Identities=33% Similarity=0.478 Sum_probs=62.8
Q ss_pred CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 862 DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 862 ~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.-..|+|.+|.+++||+|++||+|++||+|||+.+|+||.+|+|.++.+++|+.|..|++|+.|++
T Consensus 527 Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 527 SPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 356789999999999999999999999999999999999999999999999999999999999863
No 137
>PRK06154 hypothetical protein; Provisional
Probab=98.53 E-value=4.5e-07 Score=109.39 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=89.0
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG---- 265 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg---- 265 (929)
.|+||.|++.|||.+ |++ .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+-.
T Consensus 430 ~gsmG~glpaaiGa~-----la~------p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~ 496 (565)
T PRK06154 430 TTQLGYGLGLAMGAK-----LAR------PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYDKVMP 496 (565)
T ss_pred CcccccHHHHHHHHH-----HhC------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceeehhhh
Confidence 489999999999999 543 367999999999997 778899999999999788888888775311
Q ss_pred ----cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 266 ----PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 266 ----~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
+..+. ....++.+..+++|....+|
T Consensus 497 ~~~~~~~~~-~~~~df~~lA~a~G~~g~~V-------------------------------------------------- 525 (565)
T PRK06154 497 VSTTKYRAT-DISGDYAAIARALGGYGERV-------------------------------------------------- 525 (565)
T ss_pred hhcCccccc-CCCCCHHHHHHHCCCeEEEE--------------------------------------------------
Confidence 11110 01124555666666666555
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC--CCCCeEEEEeeecccC
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN--KDKPTVLLIKSIKGYG 394 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~--~~~P~vI~~~T~KG~G 394 (929)
.++++|.+|+++|.++ .++|+||.+.|-....
T Consensus 526 ---------------------~~~~el~~al~~a~~~~~~~~p~lIev~v~~~~~ 559 (565)
T PRK06154 526 ---------------------EDPEMLVPALLRALRKVKEGTPALLEVITSEETA 559 (565)
T ss_pred ---------------------CCHHHHHHHHHHHHhhccCCCeEEEEEEeChHHh
Confidence 3688999999999862 4789999999865443
No 138
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.53 E-value=4e-07 Score=110.21 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=52.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+-++||+||+.+.+
T Consensus 430 g~mG~~lpaaiGa~-----la~------p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg~ 489 (579)
T TIGR03457 430 GNCGYAFPTIIGAK-----IAA------PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWGA 489 (579)
T ss_pred ccccchHHHHHhhh-----hhC------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchHH
Confidence 79999999999999 543 367899999999998 6779999999999998899999998754
No 139
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.51 E-value=5.1e-07 Score=109.19 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=52.3
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ ++. .+++|++++|||++. ++...|..|.+++|+=++||+|||.+.+
T Consensus 407 ~gsmG~glpaAiGa~-----la~------p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg~ 467 (575)
T TIGR02720 407 FATMGVGVPGAIAAK-----LNY------PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYGF 467 (575)
T ss_pred cchhhchHHHHHHHH-----HhC------CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccHH
Confidence 499999999999988 543 367899999999998 6778899999999997778899998864
No 140
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.51 E-value=7e-07 Score=108.05 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=50.9
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
|+||.|++.|+|.+ ++. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 421 g~mG~glpaaiGa~-----la~------p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 421 GTMGFGLPAALGVK-----MAL------PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYLGM 480 (574)
T ss_pred cchhhHHHHHHHHH-----HhC------CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchhhH
Confidence 89999999999999 543 357899999999998 7789999999999997777777776543
No 141
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.51 E-value=6.2e-07 Score=107.67 Aligned_cols=62 Identities=31% Similarity=0.252 Sum_probs=52.2
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
..|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+|||.+.+
T Consensus 406 ~~g~mG~~lpaaiGa~-----la~------~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~ 467 (539)
T TIGR02418 406 GMQTLGVALPWAIGAA-----LVR------PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNM 467 (539)
T ss_pred CccccccHHHHHHHHH-----HhC------CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchH
Confidence 3479999999999999 543 367899999999998 6778899999999997788888887754
No 142
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.50 E-value=6.2e-07 Score=108.47 Aligned_cols=117 Identities=19% Similarity=0.228 Sum_probs=85.4
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc-------
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL------- 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i------- 263 (929)
|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=+++|+||+.+.+
T Consensus 423 gsmG~glpaAiGa~-----la~------p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~ 489 (574)
T PRK06466 423 GTMGFGLPAAMGVK-----LAF------PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDM 489 (574)
T ss_pred chhhchHHHHHHHH-----HhC------CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHH
Confidence 79999999999999 543 367899999999998 7788999999999987777788877643
Q ss_pred --cccccccc-cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 264 --DGPVRGNS-KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 264 --dg~v~~~~-~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+++..+.. ...-++.+..+++|....+|
T Consensus 490 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------- 520 (574)
T PRK06466 490 QYEGRHSHSYMESLPDFVKLAEAYGHVGIRI------------------------------------------------- 520 (574)
T ss_pred hcCCceeecCCCCCCCHHHHHHHCCCeEEEE-------------------------------------------------
Confidence 11111100 00124455555555555554
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.+.+++.+|+++|.+.+++|+||.+++.+
T Consensus 521 ----------------------~~~~el~~al~~a~~~~~~p~lIev~i~~ 549 (574)
T PRK06466 521 ----------------------TDLKDLKPKLEEAFAMKDRLVFIDIYVDR 549 (574)
T ss_pred ----------------------CCHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 37888999999998754789999999964
No 143
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.50 E-value=6e-07 Score=108.54 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=50.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.
T Consensus 421 g~mG~glpaaiGa~-----la~------p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~ 479 (572)
T PRK08979 421 GTMGFGLPAAMGVK-----FAM------PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFLG 479 (572)
T ss_pred ccccchhhHHHhhh-----hhC------CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCccH
Confidence 79999999999999 543 357899999999998 777889999999999777788887664
No 144
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.50 E-value=1.4e-07 Score=111.36 Aligned_cols=66 Identities=33% Similarity=0.480 Sum_probs=63.0
Q ss_pred CCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 861 GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 861 G~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
|.-.+|+|+++.|+.||+|++||+|+++|+|||+..|.||.+|+|.++.|.+|+.|..|+.|..++
T Consensus 1083 gApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1083 GAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCCCCCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 346789999999999999999999999999999999999999999999999999999999999876
No 145
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.49 E-value=6.8e-07 Score=108.55 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc------
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD------ 264 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id------ 264 (929)
|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+-
T Consensus 430 gsmG~glpaaiGa~-----lA~------p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~ 496 (595)
T PRK09107 430 GTMGYGLPAALGVQ-----IAH------PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQL 496 (595)
T ss_pred hhhhhhHHHHHHHH-----HhC------CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHH
Confidence 89999999999999 543 367899999999998 77788999999999977777888777541
Q ss_pred --cc-ccccc-cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 265 --GP-VRGNS-KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 265 --g~-v~~~~-~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
++ ....- ....++.+..+++|....+|
T Consensus 497 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------- 527 (595)
T PRK09107 497 LHGNRLSHSYTEAMPDFVKLAEAYGAVGIRC------------------------------------------------- 527 (595)
T ss_pred HhCCccccccCCCCCCHHHHHHHCCCeEEEE-------------------------------------------------
Confidence 11 11100 01135666667777666665
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.++++|.+|+++|.++ ++|+||.+.+..
T Consensus 528 ----------------------~~~~el~~al~~a~~~-~~p~lIeV~i~~ 555 (595)
T PRK09107 528 ----------------------EKPGDLDDAIQEMIDV-DKPVIFDCRVAN 555 (595)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 3688899999999876 789999999853
No 146
>PLN02470 acetolactate synthase
Probab=98.49 E-value=6.6e-07 Score=108.50 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=87.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc-----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD----- 264 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id----- 264 (929)
.|+||.|++.|+|.+ ++. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+-
T Consensus 425 ~g~mG~glpaaiGa~-----la~------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~ 491 (585)
T PLN02470 425 LGAMGFGLPAAIGAA-----AAN------PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLGMVVQWED 491 (585)
T ss_pred cccccchHHHHHHHH-----HhC------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHH
Confidence 399999999999999 543 357899999999998 77899999999999877788888876421
Q ss_pred ----cccccc--c------cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhh
Q psy2375 265 ----GPVRGN--S------KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFI 332 (929)
Q Consensus 265 ----g~v~~~--~------~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~ 332 (929)
++.... . ....++.+..+++|....+|
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v----------------------------------------- 530 (585)
T PLN02470 492 RFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV----------------------------------------- 530 (585)
T ss_pred HHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEE-----------------------------------------
Confidence 111000 0 00125666666666666665
Q ss_pred HhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 333 RKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 333 r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
+++++|.+|+++|.+. ++|+||.+.+-.
T Consensus 531 ------------------------------~~~~el~~al~~a~~~-~~p~lieV~i~~ 558 (585)
T PLN02470 531 ------------------------------TRKSDLREAIQKMLDT-PGPYLLDVIVPH 558 (585)
T ss_pred ------------------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 4789999999999875 789999999953
No 147
>PRK08611 pyruvate oxidase; Provisional
Probab=98.48 E-value=6.8e-07 Score=108.16 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=85.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG---- 265 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg---- 265 (929)
-|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+|||.+.+-.
T Consensus 407 ~g~mG~glpaaiGa~-----la~------p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~ 473 (576)
T PRK08611 407 LGTMGCGLPGAIAAK-----IAF------PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQ 473 (576)
T ss_pred chhhhhhHHHHHHHH-----HhC------CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHH
Confidence 499999999999999 533 357899999999998 678889999999998778888888765310
Q ss_pred ----cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 266 ----PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 266 ----~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
+..+.....-++.+..+++|....+|
T Consensus 474 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v-------------------------------------------------- 503 (576)
T PRK08611 474 AAGELEYAIDLSDMDYAKFAEACGGKGYRV-------------------------------------------------- 503 (576)
T ss_pred HhcCCcccccCCCCCHHHHHHHCCCeEEEe--------------------------------------------------
Confidence 00000000123445555555554444
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
+++++|..|+++|.+. ++|+||.+.|-+
T Consensus 504 ---------------------~~~~eL~~al~~a~~~-~~p~lIeV~vd~ 531 (576)
T PRK08611 504 ---------------------EKAEELDPAFEEALAQ-DKPVIIDVYVDP 531 (576)
T ss_pred ---------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 5789999999999876 789999999964
No 148
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.48 E-value=8e-07 Score=107.51 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=87.0
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc----
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD---- 264 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id---- 264 (929)
.-|+||.|++.|+|.+ |+. .+++|+|++|||++. +....|..|.+++|+=++||+||+.+.+-
T Consensus 406 ~~G~mG~~lpaAiGa~-----la~------p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~ 472 (574)
T PRK09124 406 NHGSMANAMPQALGAQ-----AAH------PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEM 472 (574)
T ss_pred CcccccchHHHHHHHH-----HhC------CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccccHHHHH
Confidence 3489999999999999 543 367899999999997 66778899999999877888888877542
Q ss_pred ---cc-ccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 265 ---GP-VRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 265 ---g~-v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+. ..+.....-++.+..+++|....+|
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------- 503 (574)
T PRK09124 473 KAGGYLTDGTDLHNPDFAAIAEACGITGIRV------------------------------------------------- 503 (574)
T ss_pred HhcCCccccCcCCCCCHHHHHHHCCCeEEEe-------------------------------------------------
Confidence 11 0000000124556666666666655
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.++++|.+|+++|.+. ++|+||.+.+-+
T Consensus 504 ----------------------~~~~eL~~al~~a~~~-~~p~lIev~i~~ 531 (574)
T PRK09124 504 ----------------------EKASELDGALQRAFAH-DGPALVDVVTAK 531 (574)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 3788999999999875 789999999853
No 149
>PRK07064 hypothetical protein; Provisional
Probab=98.47 E-value=6.6e-07 Score=107.52 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=84.4
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc-----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD----- 264 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id----- 264 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+.+|+=++||+||+.+.+-
T Consensus 404 ~g~mG~~lpaAiGa~-----lA~------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~ 470 (544)
T PRK07064 404 GGGIGQGLAMAIGAA-----LAG------PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGYGVIRNIQD 470 (544)
T ss_pred CCccccccchhhhhh-----hhC------cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHH
Confidence 478999999999999 542 367899999999997 67789999999999866677777766531
Q ss_pred ----ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 265 ----GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 265 ----g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+....+....-++.+..+++|.+...|
T Consensus 471 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------- 501 (544)
T PRK07064 471 AQYGGRRYYVELHTPDFALLAASLGLPHWRV------------------------------------------------- 501 (544)
T ss_pred HhcCCccccccCCCCCHHHHHHHCCCeEEEe-------------------------------------------------
Confidence 111111001124555566666555554
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
..+++|.+++++|.+. ++|+||.+.+.
T Consensus 502 ----------------------~~~~eL~~al~~a~~~-~~p~lIeV~~~ 528 (544)
T PRK07064 502 ----------------------TSADDFEAVLREALAK-EGPVLVEVDML 528 (544)
T ss_pred ----------------------CCHHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence 3678899999999875 78999999986
No 150
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.47 E-value=8.5e-07 Score=106.99 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=50.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
|+||.|++.|||.+ ++. .+++|+|++|||++. ++...|..|.+++|+=+++|+|||.+.
T Consensus 414 g~mG~glpaaiGa~-----la~------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~ 472 (561)
T PRK06048 414 GTMGYGFPAAIGAK-----VGK------PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYLG 472 (561)
T ss_pred cccccHHHHHHHHH-----HhC------CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCccH
Confidence 79999999999999 543 367899999999997 778899999999998777888887764
No 151
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.47 E-value=8.9e-07 Score=106.99 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=83.4
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc-----
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG----- 265 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg----- 265 (929)
|+||.|++.|+|.+ |+. .+++|+|++|||++. +....|..|.+++|+=++||+||+.+.+-.
T Consensus 422 gsmG~~lp~aiGa~-----lA~------p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~ 488 (570)
T PRK06725 422 GTMGFGFPAAIGAQ-----LAK------EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVRQWQEM 488 (570)
T ss_pred ccccchhhHHHhhH-----hhc------CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHH
Confidence 89999999999999 542 367899999999996 777889999999998566666666554311
Q ss_pred ----cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 266 ----PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 266 ----~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
+........-++.+..+++|....+|
T Consensus 489 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-------------------------------------------------- 518 (570)
T PRK06725 489 FYENRLSESKIGSPDFVKVAEAYGVKGLRA-------------------------------------------------- 518 (570)
T ss_pred hcCCccccCcCCCCCHHHHHHHCCCeEEEe--------------------------------------------------
Confidence 11110000124555556666555554
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.+++++.+|+++|.+. ++|+||.+.+-.
T Consensus 519 ---------------------~~~~~l~~al~~a~~~-~~p~liev~id~ 546 (570)
T PRK06725 519 ---------------------TNSTEAKQVMLEAFAH-EGPVVVDFCVEE 546 (570)
T ss_pred ---------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 3788899999999876 789999999853
No 152
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.46 E-value=1e-06 Score=106.39 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=50.2
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
|+||.|++.|+|.+ ++. .+++|+|++|||++. +....|..|.+++|+=+++|+|||.+.+
T Consensus 414 g~mG~~l~~aiGa~-----la~------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 414 GTMGYGLPAALGAK-----LAV------PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLGM 473 (563)
T ss_pred ccccchHHHHHHHH-----HhC------CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcchh
Confidence 79999999999999 543 257899999999999 5667799999999997777788876643
No 153
>PRK12474 hypothetical protein; Provisional
Probab=98.46 E-value=9.3e-07 Score=105.64 Aligned_cols=61 Identities=28% Similarity=0.285 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 388 ~gsmG~glpaAiGa~-----lA~------p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~ 448 (518)
T PRK12474 388 GGSIGQGLPLAAGAA-----VAA------PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAI 448 (518)
T ss_pred CCccCccHHHHHHHH-----HHC------CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchH
Confidence 499999999999999 543 367899999999998 8889999999999998888888887754
No 154
>PRK08322 acetolactate synthase; Reviewed
Probab=98.45 E-value=1.2e-06 Score=105.46 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=86.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG---- 265 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg---- 265 (929)
.|+||.|++.|+|.+ ++. ++++|+|++|||++. ++...|..|.+++++=+++|+||+.+.+-.
T Consensus 405 ~g~mG~~lpaaiGa~-----la~------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~ 471 (547)
T PRK08322 405 LATMGAGLPSAIAAK-----LVH------PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMIRWKQE 471 (547)
T ss_pred cccccchhHHHHHHH-----HhC------CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHH
Confidence 479999999999999 542 367899999999999 778889999999999788888888876421
Q ss_pred ----cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 266 ----PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 266 ----~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
...+.....-++.+..+++|.+..+|
T Consensus 472 ~~~~~~~~~~~~~~df~~lA~a~G~~~~~v-------------------------------------------------- 501 (547)
T PRK08322 472 NMGFEDFGLDFGNPDFVKYAESYGAKGYRV-------------------------------------------------- 501 (547)
T ss_pred hhcCCcccccCCCCCHHHHHHHCCCeEEEe--------------------------------------------------
Confidence 00000000124555666666655555
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.+.++|.+|+++|.+. ++|+||.+.|-.
T Consensus 502 ---------------------~~~~eL~~al~~a~~~-~~p~lIev~v~~ 529 (547)
T PRK08322 502 ---------------------ESADDLLPTLEEALAQ-PGVHVIDCPVDY 529 (547)
T ss_pred ---------------------CCHHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 3688899999999876 789999999853
No 155
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.45 E-value=9.9e-07 Score=106.95 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=51.4
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
..|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+-++||+||+.+.
T Consensus 428 ~~g~mG~glpaaiGaa-----la~------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~ 488 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQ-----IAH------PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQG 488 (585)
T ss_pred cccchhhhHHHHHHHH-----HhC------CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcch
Confidence 3489999999999999 543 367899999999997 778889999999999777778777654
No 156
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.45 E-value=9.4e-07 Score=106.89 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=84.8
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc------
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL------ 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i------ 263 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. +....|..|.+++|+=++||+||+.+.+
T Consensus 420 ~g~mG~~lp~aiGa~-----la~------p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~ 486 (574)
T PRK06882 420 AGTMGFGLPAAIGVK-----FAH------PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQD 486 (574)
T ss_pred cccccchhHHHHHHH-----hhc------CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 488999999999999 542 257899999999996 6679999999999985566666665432
Q ss_pred ---cccccccc-cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 264 ---DGPVRGNS-KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 264 ---dg~v~~~~-~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
+++..... ....++.+..+++|...+.|
T Consensus 487 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v------------------------------------------------ 518 (574)
T PRK06882 487 LIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQI------------------------------------------------ 518 (574)
T ss_pred HhcCCcccccCCCCCCCHHHHHHHCCCeEEEe------------------------------------------------
Confidence 11111000 01124566666666666555
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++.++|..|+++|.+.+++|+||.+.+..
T Consensus 519 -----------------------~~~~eL~~al~~a~~~~~~p~liev~i~~ 547 (574)
T PRK06882 519 -----------------------DTPDELEEKLTQAFSIKDKLVFVDVNVDE 547 (574)
T ss_pred -----------------------CCHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 36888999999998755789999999964
No 157
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.45 E-value=6.9e-07 Score=107.28 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=53.9
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
..|+||.|++.|||.+ ++. .+++|+|++|||++. ++...|..|.+++|+=++||+|||.+.+
T Consensus 402 ~~g~mG~glpaaiGa~-----la~------p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~ 463 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQ-----TAC------PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTV 463 (539)
T ss_pred hhhhhhhHHHHHHHHH-----hcC------CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEE
Confidence 3489999999999999 532 367899999999998 7889999999999998888899988764
No 158
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.44 E-value=8.9e-07 Score=107.07 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=50.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
|+||.|++.|+|.| |+. .+++|+|++|||++. +....|..|.+++|+=++||+|||.+.+
T Consensus 424 g~mG~glpaAiGaa-----la~------p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 424 GTMGFGLPAAIGAQ-----LAK------PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEALGM 483 (571)
T ss_pred ccccchHHHHHHHH-----HhC------CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchHHH
Confidence 79999999999999 532 367899999999998 6667799999999987777888887654
No 159
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.44 E-value=2.9e-07 Score=118.17 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=62.4
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-.+|.|.+|++++||.|++||+|+++|+|||+.+|.||.+|+|.++.+++|+.|+.|++|+.|+.
T Consensus 1082 pm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1082 PMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 46799999999999999999999999999999999999999999999999999999999999863
No 160
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.43 E-value=1.2e-06 Score=105.78 Aligned_cols=116 Identities=23% Similarity=0.270 Sum_probs=83.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc-----
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG----- 265 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg----- 265 (929)
|+||.|++.|+|.+ ++. .+++|+|++|||++. +....|..|.+++|+=++||+||+.+.+-.
T Consensus 419 g~mG~~lpaaiGa~-----la~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~ 485 (564)
T PRK08155 419 GTMGFGLPAAIGAA-----LAN------PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGLVHQQQSL 485 (564)
T ss_pred ccccchhHHHHHHH-----HhC------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHH
Confidence 79999999999999 532 367899999999999 566778899999998666677777665421
Q ss_pred ----ccccccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 266 ----PVRGNSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 266 ----~v~~~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+..+... ..-++.+..+++|...++|
T Consensus 486 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------- 516 (564)
T PRK08155 486 FYGQRVFAATYPGKINFMQIAAGFGLETCDL------------------------------------------------- 516 (564)
T ss_pred hcCCCeeeccCCCCCCHHHHHHHCCCeEEEe-------------------------------------------------
Confidence 1111000 0124556666666665555
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.+++++.+++++|.+. ++|++|.+.+-.
T Consensus 517 ----------------------~~~~el~~al~~a~~~-~~p~lIeV~~~~ 544 (564)
T PRK08155 517 ----------------------NNEADPQAALQEAINR-PGPALIHVRIDA 544 (564)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 3678899999999875 789999999853
No 161
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=98.43 E-value=1.1e-06 Score=105.85 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=50.1
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+.+++=+++|+|||.+.+
T Consensus 401 g~mG~glpaAiGa~-----la~------p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 401 GTMGFGLPAAIGAQ-----VAR------PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLGM 460 (548)
T ss_pred hhhhchHHHHHHHH-----HhC------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHH
Confidence 89999999999999 542 367899999999998 7778899999999986667777776643
No 162
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.42 E-value=1.1e-06 Score=106.62 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=51.2
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.
T Consensus 418 gsmG~glpaaiGa~-----lA~------pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg 476 (588)
T TIGR01504 418 GPLGWTIPAALGVC-----AAD------PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLG 476 (588)
T ss_pred ccccchHhHHHhhh-----hhC------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH
Confidence 89999999999999 543 367899999999998 667899999999999788888888774
No 163
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.41 E-value=1.3e-06 Score=74.24 Aligned_cols=70 Identities=29% Similarity=0.536 Sum_probs=64.9
Q ss_pred cccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 856 KVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 856 al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
+.+.++ ....+.+.+|++..|+.|..|++++.+|++|+..++.+|.+|++.+..+.+|+.+..|++|+.|
T Consensus 4 ~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 4 KMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred ECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 456666 4788999999999999999999999999999999999999999999999999999999999875
No 164
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.41 E-value=1.1e-06 Score=106.13 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=81.6
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc------
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD------ 264 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id------ 264 (929)
|+||.|++.|+|.+ |+. .+++|+|++|||++.- ....|..|.+++|+=+++|+||+.+.+-
T Consensus 412 g~mG~~l~aaiGa~-----la~------~~~~vv~~~GDG~f~~--~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~ 478 (558)
T TIGR00118 412 GTMGFGLPAAIGAK-----VAK------PESTVICITGDGSFQM--NLQELSTAVQYDIPVKILILNNRYLGMVRQWQEL 478 (558)
T ss_pred ccccchhhHHHhhh-----hhC------CCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHH
Confidence 78999999999998 543 3578999999999984 5678999999999855555555554321
Q ss_pred ---cccccccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 265 ---GPVRGNSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 265 ---g~v~~~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
++...... ..-++.+..+++|.+..+|
T Consensus 479 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------- 509 (558)
T TIGR00118 479 FYEERYSHTHMGSLPDFVKLAEAYGIKGIRI------------------------------------------------- 509 (558)
T ss_pred hcCCceeeccCCCCCCHHHHHHHCCCeEEEE-------------------------------------------------
Confidence 11101000 0124555556666555554
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++.+++.+|+++|.+. ++|+||.+++.+
T Consensus 510 ----------------------~~~~~l~~al~~a~~~-~~p~liev~~~~ 537 (558)
T TIGR00118 510 ----------------------EKPEELDEKLKEALSS-NEPVLLDVVVDK 537 (558)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 3578899999999876 789999999964
No 165
>PRK07586 hypothetical protein; Validated
Probab=98.40 E-value=1.2e-06 Score=104.66 Aligned_cols=61 Identities=28% Similarity=0.303 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 384 ~g~mG~~lpaaiGa~-----lA~------p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y~~ 444 (514)
T PRK07586 384 GGAIGQGLPLATGAA-----VAC------PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAYAI 444 (514)
T ss_pred CcccccHHHHHHHHH-----HhC------CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchhHH
Confidence 489999999999999 542 367899999999998 7789999999999997788889987753
No 166
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.40 E-value=1.2e-06 Score=106.18 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=49.3
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
|+||.|++.|+|.+ |+. .+++|||++|||++. ++...|..|.+.+|+=++||+||+.+.
T Consensus 419 gsmG~~lpaaiGa~-----la~------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g 477 (586)
T PRK06276 419 GTMGFGFPAAIGAK-----VAK------PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLG 477 (586)
T ss_pred cccccchhHHHhhh-----hhc------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH
Confidence 79999999999999 543 256899999999998 777889999999998666777777654
No 167
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.40 E-value=1.5e-06 Score=105.49 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=49.9
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
-|+||.|++.|+|.+ ++. .+++|+|++|||++.- +...|..|.+++|+=++||+||+.+.+
T Consensus 434 ~g~mG~glp~aiGa~-----la~------p~r~vv~i~GDG~f~~--~~~el~Ta~~~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 434 FGNCGYAFPAIIGAK-----IAC------PDRPVVGFAGDGAWGI--SMNEVMTAVRHNWPVTAVVFRNYQWGA 494 (588)
T ss_pred ccccccHHHHHHHHH-----HhC------CCCcEEEEEcCchHhc--cHHHHHHHHHhCCCeEEEEEeCchhHH
Confidence 388999999999999 543 3578999999999984 567788999999996667778887743
No 168
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.40 E-value=1.4e-06 Score=105.87 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=50.9
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
.|+||.|++.|||.+ ++. .+++|+|++|||++. +....|..|.+++|+-++||+||+.+.
T Consensus 418 ~G~mG~glpaAiGa~-----la~------p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g 477 (591)
T PRK11269 418 AGPLGWTIPAALGVR-----AAD------PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLG 477 (591)
T ss_pred cccccchhhhHHhhh-----hhC------CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchh
Confidence 489999999999999 532 367899999999998 667889999999999888888888664
No 169
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=98.39 E-value=1.6e-06 Score=105.42 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=84.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCccc-HHHHHHHHHc-----CCCeEEEEEecCCCccc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPES-ISEISMAARE-----KLDNLIMIVNCNLQRLD 264 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~-~eAl~~A~~~-----~L~nli~vvn~N~~~id 264 (929)
|+||.|++.|+|.+ |+. .+++|+|++|||++. ++ ...|..|.++ +|+=++||+||+.+.+-
T Consensus 415 g~mG~glpaaiGa~-----la~------p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i 481 (597)
T PRK08273 415 ATMGPAVPYAIAAK-----FAH------PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQV 481 (597)
T ss_pred ccccchHHHHHHHH-----HhC------CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHH
Confidence 89999999999999 543 367899999999995 66 4778888888 89867777777766431
Q ss_pred ---------cccc--ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhH
Q psy2375 265 ---------GPVR--GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIR 333 (929)
Q Consensus 265 ---------g~v~--~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r 333 (929)
++.. ++....-++.+..+++|+...+|
T Consensus 482 ~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------ 519 (597)
T PRK08273 482 TWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV------------------------------------------ 519 (597)
T ss_pred HHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE------------------------------------------
Confidence 1110 10000123666777777777776
Q ss_pred hhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 334 KNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 334 ~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
.++++|..|+++|.+. ++|+||.++|-.
T Consensus 520 -----------------------------~~~~eL~~al~~a~~~-~~p~lIeV~~~~ 547 (597)
T PRK08273 520 -----------------------------DDPEQLGAAWDEALAA-DRPVVLEVKTDP 547 (597)
T ss_pred -----------------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 3678899999999875 789999999853
No 170
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=98.39 E-value=1.8e-06 Score=103.88 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=52.0
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ +++. .+++|+|++|||++. ++...|..|.+++|+=+++|+||+.+.+
T Consensus 395 ~g~mG~glpaaiGa~-----la~p-----~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g~ 456 (549)
T PRK06457 395 LGSMGIGVPGSVGAS-----FAVE-----NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLGM 456 (549)
T ss_pred cchhhhhHHHHHHHH-----hcCC-----CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccch
Confidence 599999999999999 5321 168999999999998 7788899999999987778888887653
No 171
>PRK05858 hypothetical protein; Provisional
Probab=98.38 E-value=2e-06 Score=103.47 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=50.9
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=+++|+||+.+.+
T Consensus 406 ~gsmG~~lp~aiGa~-----la~------p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 406 FGCLGTGPGYALAAR-----LAR------PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWGL 466 (542)
T ss_pred ccccccchhHHHHHH-----HhC------CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchhh
Confidence 489999999999999 543 367899999999998 7788999999999986777777766643
No 172
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=98.38 E-value=1.8e-06 Score=104.44 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=51.2
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 420 ~g~mG~glpaAiGa~-----la~------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 420 MGTMGFGLPAAMGAK-----LAR------PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLGL 480 (572)
T ss_pred cccccchhHHHHHHH-----HhC------CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchHH
Confidence 489999999999999 543 357899999999998 7778999999999987777777776654
No 173
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.38 E-value=1.7e-06 Score=105.50 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=49.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
.|+||.|++.|||.+ |+. .+++|||++|||++. ++...|..|.+++|+=+++|+||+.+.
T Consensus 433 ~g~mG~glpaAiGA~-----lA~------p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g 492 (616)
T PRK07418 433 LGTMGFGMPAAMGVK-----VAL------PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQG 492 (616)
T ss_pred ccccccHHHHHHHHH-----HhC------CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcch
Confidence 489999999999999 543 367899999999998 778889999999998666666666543
No 174
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=98.37 E-value=1.5e-06 Score=105.84 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=50.6
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=+++|+||+.+.
T Consensus 447 G~mG~glpaaiGa~-----la~------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g 505 (612)
T PRK07789 447 GTMGYAVPAAMGAK-----VGR------PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNLG 505 (612)
T ss_pred ccccchhhhHHhhh-----ccC------CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCchH
Confidence 79999999999999 542 367899999999998 778899999999999777778887664
No 175
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.37 E-value=2.3e-06 Score=92.12 Aligned_cols=66 Identities=9% Similarity=0.152 Sum_probs=44.7
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccC-CcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMD-EPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~-eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
..|+||.|++.|||.+ ++ ++.....+++|||+.|||++. -| ...+..+.+.++|=+++|+||+.+.
T Consensus 62 ~~g~mG~GlpaAiGA~-----~a-~~~~~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg 128 (237)
T cd02018 62 DANAVASGLKRGLKAR-----FP-KDRELDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYS 128 (237)
T ss_pred CHHHHHHHHHHHHHhh-----cc-cccccCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCcccc
Confidence 4599999999999988 32 111123578999999999863 22 4455667779987455555555444
No 176
>PRK08617 acetolactate synthase; Reviewed
Probab=98.36 E-value=1.7e-06 Score=104.10 Aligned_cols=61 Identities=28% Similarity=0.266 Sum_probs=50.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|+||.|++.|+|.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 413 ~g~mG~~lpaaiGa~-----la~------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~ 473 (552)
T PRK08617 413 MQTLGVALPWAIAAA-----LVR------PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNM 473 (552)
T ss_pred cccccccccHHHhhH-----hhc------CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccch
Confidence 489999999999999 532 367899999999998 7788899999999985667777776643
No 177
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.36 E-value=1.7e-06 Score=103.73 Aligned_cols=118 Identities=22% Similarity=0.230 Sum_probs=88.9
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc-----
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL----- 263 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i----- 263 (929)
..|+||.|++.|||.+ ++ ..+++|+|++|||++. ++...|..|.+++++=.++|+||+.+.+
T Consensus 406 ~~GtMG~glPaAIGAk-----la------~P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q 472 (550)
T COG0028 406 GLGTMGFGLPAAIGAK-----LA------APDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMVRQWQ 472 (550)
T ss_pred CCccccchHHHHHHHH-----hh------CCCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccchHHH
Confidence 3589999999999999 43 2378999999999998 8899999999999964455555554432
Q ss_pred ----cccccccccchHH-HHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 264 ----DGPVRGNSKIIQE-LEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 264 ----dg~v~~~~~~~~~-l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
.++..+. ..... +.+..+++|....+|
T Consensus 473 ~~~~~~~~~~~-~~~~~~f~klAea~G~~g~~v----------------------------------------------- 504 (550)
T COG0028 473 ELFYGGRYSGT-DLGNPDFVKLAEAYGAKGIRV----------------------------------------------- 504 (550)
T ss_pred HHhcCCCccee-ecCCccHHHHHHHcCCeeEEe-----------------------------------------------
Confidence 1111111 12223 777788888888887
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
+ +++++.+++++|.+. ++|+||.+.+-.-
T Consensus 505 ----------------------~--~~~el~~al~~al~~-~~p~lidv~id~~ 533 (550)
T COG0028 505 ----------------------E--TPEELEEALEEALAS-DGPVLIDVVVDPE 533 (550)
T ss_pred ----------------------C--CHHHHHHHHHHHHhC-CCCEEEEEEecCc
Confidence 2 789999999999987 7899999998754
No 178
>PLN02573 pyruvate decarboxylase
Probab=98.36 E-value=1.5e-06 Score=105.27 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
-|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+=++||+||+.+.+
T Consensus 427 ~gsmG~glpaaiGa~-----lA~------p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~ 487 (578)
T PLN02573 427 YGSIGWSVGATLGYA-----QAA------PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTI 487 (578)
T ss_pred hhhhhhhhhHHHHHH-----HhC------CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeE
Confidence 489999999999999 543 357899999999998 8889999999999998888888887765
No 179
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.32 E-value=3.4e-06 Score=101.73 Aligned_cols=116 Identities=20% Similarity=0.120 Sum_probs=84.4
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccc------
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLD------ 264 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~id------ 264 (929)
|+||.|++.|||.+ ++ .+++|+|++|||++. ++...|..|++++|+=++||+||+++...
T Consensus 417 gsmG~~lpaaiGaa-----la-------~~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~ 482 (554)
T TIGR03254 417 GVMGIGMGYAIAAA-----VE-------TGKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVV 482 (554)
T ss_pred CcCCchHHHHHHHH-----hc-------CCCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhc
Confidence 89999999999999 42 157899999999998 77778999999999977777777754211
Q ss_pred c-ccccccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChh
Q psy2375 265 G-PVRGNSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPK 342 (929)
Q Consensus 265 g-~v~~~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~ 342 (929)
+ ...+... ..-+..+..+++|....+|
T Consensus 483 ~~~~~~~~~~~~~df~~la~a~G~~~~~v--------------------------------------------------- 511 (554)
T TIGR03254 483 GADPAPTVLVHGARYDKMMKAFGGVGYNV--------------------------------------------------- 511 (554)
T ss_pred CCCCCccccCCCCCHHHHHHHCCCeEEEe---------------------------------------------------
Confidence 1 0000000 0124556666666666655
Q ss_pred HHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 343 LLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 343 ~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
.+++++.+|+++|.+. ++|+||.+.+-+.
T Consensus 512 --------------------~~~~el~~al~~a~~~-~~p~lIev~id~~ 540 (554)
T TIGR03254 512 --------------------TTPDELKAALNEALAS-GKPTLINAVIDPS 540 (554)
T ss_pred --------------------CCHHHHHHHHHHHHhC-CCCEEEEEEECCC
Confidence 3788999999999875 7899999998644
No 180
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.29 E-value=3.9e-06 Score=93.12 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=47.5
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
++||.+++.|+|.+ |++ .+++|||+.|||++- ++....|..|++.++|=+++|+|++.+.+
T Consensus 70 g~mG~alpaAiGak-----lA~------pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~ 130 (301)
T PRK05778 70 TLHGRAIAFATGAK-----LAN------PDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGL 130 (301)
T ss_pred hhhccHHHHHHHHH-----HHC------CCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhc
Confidence 67999999999999 543 367899999999972 34467888899999985666666666554
No 181
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.28 E-value=2.9e-06 Score=102.53 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
-|+||.|++.|||.+ |+. .+++|+|++|||++. ++...|..|.+++|+-++||+||+.+.+
T Consensus 417 ~g~mG~glpaaiGa~-----lA~------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 417 LGTMGFGIPAAIGAK-----IAN------PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLGM 477 (566)
T ss_pred cccccchhhHhheeh-----eec------CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCchH
Confidence 389999999999999 532 367899999999998 7788899999999998888888887764
No 182
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.28 E-value=4.4e-06 Score=101.03 Aligned_cols=119 Identities=19% Similarity=0.124 Sum_probs=85.4
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc--c----
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR--L---- 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~--i---- 263 (929)
.|+||.|++.|||.+ ++ .+++|+|++|||++. ++...|..|.+++|+=++||+||+++. .
T Consensus 423 ~gsmG~glpaaiGa~-----la-------~~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~ 488 (569)
T PRK09259 423 WGVMGIGMGYAIAAA-----VE-------TGKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNL 488 (569)
T ss_pred CccccccHHHHHHHH-----hc-------CCCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHh
Confidence 389999999999999 43 157899999999998 777889999999998667777776531 0
Q ss_pred cc--ccccccc-chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 264 DG--PVRGNSK-IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 264 dg--~v~~~~~-~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
.+ ....... ..-+..+..+++|....+|
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------- 519 (569)
T PRK09259 489 SGAGDPSPTVLVHHARYDKMMEAFGGVGYNV------------------------------------------------- 519 (569)
T ss_pred hcCCCccccccCCCCCHHHHHHHCCCeEEEE-------------------------------------------------
Confidence 00 0000000 0124556666666665555
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
.+.+++.+|+++|.+. ++|+||.+.+.+-.+
T Consensus 520 ----------------------~~~~el~~al~~a~~~-~~p~lIev~id~~~~ 550 (569)
T PRK09259 520 ----------------------TTPDELRHALTEAIAS-GKPTLINVVIDPAAG 550 (569)
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEECCCCC
Confidence 3688899999999875 789999999976544
No 183
>KOG0369|consensus
Probab=98.25 E-value=1.5e-06 Score=100.78 Aligned_cols=67 Identities=33% Similarity=0.433 Sum_probs=63.7
Q ss_pred CCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 861 GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 861 G~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|.-.+|+|.++.|++|++|++||+|+++.+|||++.|.||.+|+|+++.+..|+.|+.|+.+++++.
T Consensus 1110 gAPMpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1110 GAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred cCCCCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 3467999999999999999999999999999999999999999999999999999999999999873
No 184
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.23 E-value=4.5e-06 Score=100.19 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=85.2
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccc---
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPV--- 267 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v--- 267 (929)
|+||.|++.|+|.+ ++. ++++++++|||++. ++...|..|.+++|+=++||+||+.+.+-..-
T Consensus 403 g~mG~glpaaiGa~-----lA~-------~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~ 468 (535)
T TIGR03394 403 AGMGFGVPAGIGAQ-----CTS-------GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPE 468 (535)
T ss_pred chhhhHHHHHHHHH-----hCC-------CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhccC
Confidence 89999999999999 432 24568899999998 88899999999999988888888877642100
Q ss_pred c-ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHH
Q psy2375 268 R-GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKM 346 (929)
Q Consensus 268 ~-~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~ 346 (929)
. .+.....++.+..+++|-...+|
T Consensus 469 ~~~~~~~~~d~~~lA~a~G~~~~~v------------------------------------------------------- 493 (535)
T TIGR03394 469 SAFNDLDDWRFADMAAGMGGDGVRV------------------------------------------------------- 493 (535)
T ss_pred CCcccCCCCCHHHHHHHcCCCceEe-------------------------------------------------------
Confidence 0 11001234556666666665555
Q ss_pred HhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 347 IEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 347 v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
+++++|.+|+++|.+..++|+||.+.+.
T Consensus 494 ----------------~~~~eL~~al~~a~~~~~~p~lIev~i~ 521 (535)
T TIGR03394 494 ----------------RTRAELAAALDKAFATRGRFQLIEAMLP 521 (535)
T ss_pred ----------------CCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 3678899999999876677999999884
No 185
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.21 E-value=8.7e-06 Score=89.39 Aligned_cols=118 Identities=19% Similarity=0.088 Sum_probs=80.9
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCC-ccCCcccHHHHHHHHHcCCCeEEEEEecC-CCcccc--
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDG-EMDEPESISEISMAAREKLDNLIMIVNCN-LQRLDG-- 265 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDG-e~~eg~~~eAl~~A~~~~L~nli~vvn~N-~~~idg-- 265 (929)
-+.||.+++.|+|.+ +++ .+++||+++||| .+.-| ...|..|++.+++ +++||-|| .+.+-+
T Consensus 58 ~~~~G~alp~A~Gak-----lA~------Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~-i~vIV~nN~~ygmtggQ 123 (279)
T PRK11866 58 HGIHGRVLPIATGVK-----WAN------PKLTVIGYGGDGDGYGIG--LGHLPHAARRNVD-ITYIVSNNQVYGLTTGQ 123 (279)
T ss_pred ccccccHHHHHHHHH-----HHC------CCCcEEEEECChHHHHcc--HHHHHHHHHHCcC-cEEEEEEChhhhhhccc
Confidence 466899999999999 543 357899999999 58744 7789999999998 55555555 333322
Q ss_pred -----ccccc------ccc--hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhh
Q psy2375 266 -----PVRGN------SKI--IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFI 332 (929)
Q Consensus 266 -----~v~~~------~~~--~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~ 332 (929)
|.+.. +.. .-++....+++|...+...
T Consensus 124 ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~---------------------------------------- 163 (279)
T PRK11866 124 ASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARG---------------------------------------- 163 (279)
T ss_pred ccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEE----------------------------------------
Confidence 11000 000 0155666666776544331
Q ss_pred HhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 333 RKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 333 r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
...+++++.+++++|.++ ++|++|++.+.
T Consensus 164 ----------------------------~~~~~~~l~~~l~~Al~~-~Gps~I~v~~p 192 (279)
T PRK11866 164 ----------------------------FSGDVKHLKEIIKEAIKH-KGFSFIDVLSP 192 (279)
T ss_pred ----------------------------cCCCHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 225889999999999987 68999998875
No 186
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.21 E-value=6.2e-06 Score=90.55 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=44.8
Q ss_pred cCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 192 SMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 192 s~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
+||.|++.|+|.+ +++ .+++|||++|||++.- .....+..|++.+++=+++|+||+.+.+
T Consensus 69 ~~G~alPaAiGak-----lA~------Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm 128 (277)
T PRK09628 69 THGRAVAYATGIK-----LAN------PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL 128 (277)
T ss_pred ccccHHHHHHHHH-----HHC------CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc
Confidence 7899999999999 533 3689999999999742 2233445589999986667777776654
No 187
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.20 E-value=9.9e-06 Score=89.23 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=45.1
Q ss_pred cCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 192 SMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 192 s~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.||.+++.|+|.+ |++ .+++|||++|||++ -++....|..|++.++|=+++|+||+.+.+
T Consensus 54 ~mG~alPaAiGak-----lA~------Pd~~VVai~GDG~f-~~mg~~eL~tA~r~nl~I~vIVlNN~~yGm 113 (287)
T TIGR02177 54 LHGRALPVATGIK-----LAN------PHLKVIVVGGDGDL-YGIGGNHFVAAGRRNVDITVIVHDNQVYGL 113 (287)
T ss_pred ccccHHHHHHHHH-----HHC------CCCcEEEEeCchHH-HhccHHHHHHHHHhCcCeEEEEEECHHHHh
Confidence 4799999999999 543 36799999999996 335577888999999984455555554443
No 188
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.19 E-value=2.1e-05 Score=86.98 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=51.3
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCcc-CCcccHHHHHHHHHcCCCeEEEEEecCCC
Q psy2375 188 FPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEM-DEPESISEISMAAREKLDNLIMIVNCNLQ 261 (929)
Q Consensus 188 f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~-~eg~~~eAl~~A~~~~L~nli~vvn~N~~ 261 (929)
...+.+|-++++|.|++.+.+++. .+.+|||+.|||.+ +-| .++|..|...+. |+++||=||..
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~-------~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~-ni~~ivlDNe~ 130 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALG-------KKVNVVAIGGDGGTADIG--FQSLSGAMERGH-NILYLMYDNEA 130 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhc-------CCCeEEEEeCCchHhhcc--HHHHHHHHHcCC-CeEEEEECCcc
Confidence 346678999999999998887641 35689999999977 555 489999999995 69988888854
No 189
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.18 E-value=8e-05 Score=86.41 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=136.7
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+.+++.= +|..++++.+ |.|..| .+.+..|-+ =|+.-+.|.++.++-...|-|+.....++- .--++|.
T Consensus 57 ~~~vq~E-~E~~A~~~~~----GAs~aG--aRa~TaTS~-~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~---~~~~i~~ 125 (407)
T PRK09622 57 GEFVMVE-SEHAAMSACV----GAAAAG--GRVATATSS-QGLALMVEVLYQASGMRLPIVLNLVNRALA---APLNVNG 125 (407)
T ss_pred cEEEeec-cHHHHHHHHH----HHHhhC--cCEEeecCc-chHHHHhhHHHHHHHhhCCEEEEEeccccC---CCcCCCc
Confidence 4566643 9999887733 345567 777765544 346667777776666778766665544421 1256777
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC--CceEEEEEecC-----CCCCCCCCCC---------cccc
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN--QEDVFYYITVM-----NENYSHPGLK---------KGQE 706 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~--~~~v~~rl~~~-----~e~~~~p~~~---------~~~~ 706 (929)
+..|+...| --++.+++|++..|+..+...|++--... .-||+++.... .++...|..+ ....
T Consensus 126 d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~ 204 (407)
T PRK09622 126 DHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKN 204 (407)
T ss_pred hHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccc
Confidence 777776655 46699999999999999999888652111 22366554322 1111111100 0000
Q ss_pred ------cccccc------eEE-----Eec-------------------cC----C-c---CCCCcEEEEEeChhHHHHH-
Q psy2375 707 ------KGIIKG------LYL-----LKN-------------------HN----N-E---KSKLKVQLIGSGAILREIL- 741 (929)
Q Consensus 707 ------~~i~~G------~y~-----l~~-------------------g~----~-~---~~g~dv~Lia~G~~v~~al- 741 (929)
..+..| .+. ... .. . . .++.+++||++|+++..+.
T Consensus 205 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~e 284 (407)
T PRK09622 205 SMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIV 284 (407)
T ss_pred cccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHH
Confidence 000000 000 000 00 0 0 1246899999999999999
Q ss_pred HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHHHHhh
Q psy2375 742 ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAF 817 (929)
Q Consensus 742 AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~ 817 (929)
|++.|+++ |+++.|+++++++||+.+. +.++++++ ..|+++|++.. +++..+.++
T Consensus 285 a~~~L~~~-G~kvgvi~~r~~~Pfp~~~-------------------l~~~l~~~-k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 285 AAKEMRKE-GIKAGVATIRVLRPFPYER-------------------LGQALKNL-KALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred HHHHHHhC-CCCeEEEEeeEhhhCCHHH-------------------HHHHHhcC-CEEEEEeCCCCCCCccHHHHHH
Confidence 99999998 9999999999999998754 35566666 68999999853 344444333
No 190
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.17 E-value=4.9e-06 Score=100.57 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=49.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.++||.|++.|+|.+ |+ .+++|+|++|||++. +....+..|.+.+|+=++||+||+.+.+
T Consensus 424 ~~~~G~~lpaaiGaa-----la-------~~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~ 483 (568)
T PRK07449 424 ASGIDGLLSTAAGVA-----RA-------SAKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGI 483 (568)
T ss_pred ccchhhHHHHHHHHH-----hc-------CCCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCcc
Confidence 377999999999999 43 267899999999999 5567788899999987778888887664
No 191
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.16 E-value=1.1e-05 Score=98.07 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=86.8
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCccc-HHHHHHHHHcCCCeEEEEEecCCCcccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPES-ISEISMAAREKLDNLIMIVNCNLQRLDGPV 267 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~-~eAl~~A~~~~L~nli~vvn~N~~~idg~v 267 (929)
+.++||.|++.|+|.+ ++. .+++|++++|||++. .+ ...|..|.+++++=+++|+||+.+.+-+.-
T Consensus 401 ~~~~mG~~~~~AiGa~-----~a~------p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q 467 (595)
T TIGR03336 401 TTLCMGASIGVASGLS-----KAG------EKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAMTGHQ 467 (595)
T ss_pred eeeccCchHHHHhhhh-----hcC------CCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceeccCCC
Confidence 4589999999999999 432 357899999999997 43 567778999999866777777777653311
Q ss_pred c--ccc--c-----chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 268 R--GNS--K-----IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 268 ~--~~~--~-----~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
. ... . ..-++++..+++|+..++|.
T Consensus 468 ~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~---------------------------------------------- 501 (595)
T TIGR03336 468 PNPGTGVTGMGEATKEISIEELCRASGVEFVEVV---------------------------------------------- 501 (595)
T ss_pred CCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEe----------------------------------------------
Confidence 0 000 0 01357788888888887773
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
+-.|++++.+++++|.+. ++|++|+++.
T Consensus 502 ----------------------~~~~l~~l~~al~~a~~~-~gp~li~v~~ 529 (595)
T TIGR03336 502 ----------------------DPLNVKETIEVFKAALAA-EGVSVIIAKQ 529 (595)
T ss_pred ----------------------CcCCHHHHHHHHHHHHhc-CCCEEEEEcc
Confidence 334778889999999876 6899999755
No 192
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=98.15 E-value=1.7e-05 Score=78.85 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=83.4
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEee-hhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFY-SMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGL 639 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~y-s~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~ 639 (929)
.+++.+..+++|++++++ |. |||..| + +|++.+. .+| +.++.+++..+...+.| ++++.+..+.. ...+.
T Consensus 33 ~~~~~~~~~~~E~~a~~~--A~--G~a~~~-~-~~v~~~~~gpg-~~~~~~~l~~a~~~~~P-vl~i~~~~~~~-~~~~~ 103 (154)
T cd06586 33 GDKRIIDTVIHELGAAGA--AA--GYARAG-G-PPVVIVTSGTG-LLNAINGLADAAAEHLP-VVFLIGARGIS-AQAKQ 103 (154)
T ss_pred cCCceEEeeCCHHHHHHH--HH--HHHHhh-C-CEEEEEcCCCc-HHHHHHHHHHHHhcCCC-EEEEeCCCChh-hhccC
Confidence 468999999999998876 44 588887 4 7876544 677 67888888755545555 55555444332 33577
Q ss_pred CCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 640 QHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 640 tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
+||..+++.+++.+|++.+..|+...+... +..+++....+..|||+.++
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELPAG-IDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHHHH-HHHHHHHHhcCCCCEEEEcc
Confidence 899999999999999999998888665554 44455433222235887764
No 193
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.10 E-value=1.8e-05 Score=86.92 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=44.2
Q ss_pred cCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc
Q psy2375 192 SMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262 (929)
Q Consensus 192 s~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~ 262 (929)
.||.+++.|+|.+ +++ .+++|||++|||.+. ..-...|..|++.++|=+++|+||+.+.
T Consensus 61 ~mG~alp~AiGak-----lA~------pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg 119 (280)
T PRK11869 61 LHGRAIPAATAVK-----ATN------PELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYG 119 (280)
T ss_pred ccccHHHHHHHHH-----HHC------CCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHh
Confidence 3899999999998 432 357999999999964 1227889999999998445555555443
No 194
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.10 E-value=2.1e-05 Score=86.96 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=48.0
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCc-cCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGE-MDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe-~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
+.||.|++.|+|.+ |++ .+++|||++|||+ +. +....+..|.+.++|=+++|+||+.+.+
T Consensus 69 g~mG~alpaAiGak-----lA~------Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGm 129 (286)
T PRK11867 69 TIHGRALAIATGLK-----LAN------PDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGL 129 (286)
T ss_pred hhhhcHHHHHHHHH-----HhC------CCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhh
Confidence 68999999999999 543 3679999999995 66 4467788899999986667777776654
No 195
>KOG0238|consensus
Probab=98.02 E-value=4e-06 Score=95.28 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=61.0
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-.+|.|.+++|+.||.|++||.++++++|||++.++||.+|+|..+.++.|++|..|.+|.+++
T Consensus 607 PMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 607 PMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 3678999999999999999999999999999999999999999999999999999999999864
No 196
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=97.94 E-value=0.0011 Score=76.25 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=137.0
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t 640 (929)
..+.+++. =+|..++++.+ | -|..| .+.+..|-+ =|+.-..+++..++....|-|++..+.+|.. ..-+|
T Consensus 46 ~g~~~vq~-E~E~aA~~~a~--G--As~aG--~Ra~taTSg-~G~~lm~E~~~~a~~~e~P~V~~~~~R~Gps--tG~p~ 115 (375)
T PRK09627 46 CGGTFIQM-EDEISGISVAL--G--ASMSG--VKSMTASSG-PGISLKAEQIGLGFIAEIPLVIVNVMRGGPS--TGLPT 115 (375)
T ss_pred cCCEEEEc-CCHHHHHHHHH--H--HHhhC--CCEEeecCC-chHHHHhhHHHHHHhccCCEEEEEeccCCCc--CCCCC
Confidence 44567766 39999888733 3 44556 777776544 2455666777666666777666655544332 22366
Q ss_pred CCChhhHHHHh-----cCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC----CCCCCCCCCCc--------
Q psy2375 641 HEDGHSHVLAS-----TIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM----NENYSHPGLKK-------- 703 (929)
Q Consensus 641 Hq~~ed~~l~r-----~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~----~e~~~~p~~~~-------- 703 (929)
..+..|+...+ -.|.+ |++|++..|+.-+...|++--..=.-||+++.... .++...|....
T Consensus 116 ~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~ 194 (375)
T PRK09627 116 RVAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINR 194 (375)
T ss_pred ccchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhcccccccc
Confidence 66667776665 45665 99999999999999888754211122466554221 11211111000
Q ss_pred -----c---c-cccc-----------cc-ceEEE---------------------------------eccC-C---cCCC
Q psy2375 704 -----G---Q-EKGI-----------IK-GLYLL---------------------------------KNHN-N---EKSK 725 (929)
Q Consensus 704 -----~---~-~~~i-----------~~-G~y~l---------------------------------~~g~-~---~~~g 725 (929)
. . ...+ .. +.+.+ +.-. . +-+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~d 274 (375)
T PRK09627 195 KEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDD 274 (375)
T ss_pred ccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCC
Confidence 0 0 0000 00 01110 0000 0 0023
Q ss_pred CcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEe
Q psy2375 726 LKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVAT 804 (929)
Q Consensus 726 ~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtve 804 (929)
.|+.||++|+....+. |.+.|+++ |+++.++.+.++.||+.+. +.+.+++. ..|+++|
T Consensus 275 Ad~~IV~~GSt~~~~keAv~~lr~~-G~kvg~l~~~~~~PfP~~~-------------------i~~~l~~~-k~viVvE 333 (375)
T PRK09627 275 AEILIIAYGSVSLSAKEAIKRLREE-GIKVGLFRPITLWPSPAKK-------------------LKEIGDKF-EKILVIE 333 (375)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhc-CCeEEEEEeCeEECCCHHH-------------------HHHHHhcC-CEEEEEc
Confidence 5899999999999999 99999998 9999999999999997643 35666776 6889899
Q ss_pred cccchhHHHHHhhcc
Q psy2375 805 DYMRLFAEQVRAFIP 819 (929)
Q Consensus 805 d~~~~~~~~i~~~l~ 819 (929)
..+.-+...|+..+.
T Consensus 334 ~n~Gql~~~v~~~~~ 348 (375)
T PRK09627 334 LNMGQYLEEIERVMQ 348 (375)
T ss_pred CChHHHHHHHHHHhC
Confidence 886335555555554
No 197
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.83 E-value=8e-05 Score=85.96 Aligned_cols=64 Identities=27% Similarity=0.392 Sum_probs=56.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP 266 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~ 266 (929)
=||.|...+.|+|.| ++++ +|+|+.|+|||+++ ++-..++.--|++|+.+|||+|+++|.|.--
T Consensus 410 WGSIG~t~pAalGa~-----~A~~------drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTIEr~ 473 (557)
T COG3961 410 WGSIGYTLPAALGAA-----LAAP------DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTIERA 473 (557)
T ss_pred hhhcccccHhhhhhh-----hcCC------CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEEEeh
Confidence 389999999999999 5544 58999999999999 7888899999999999999999999987643
No 198
>KOG1185|consensus
Probab=97.73 E-value=0.0003 Score=80.40 Aligned_cols=69 Identities=29% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEE
Q psy2375 176 YPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMI 255 (929)
Q Consensus 176 ~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~v 255 (929)
.|..|+.++ .-|.||-|+..|++.| +. .++++|||+-||+++- -|.=-+..+.|.||+=+++|
T Consensus 419 ~Pr~rLDaG----tfgTMGVG~Gfalaaa-----~~------~P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV 481 (571)
T KOG1185|consen 419 GPRRRLDAG----TFGTMGVGLGFALAAA-----LA------APDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVV 481 (571)
T ss_pred CcccccCCc----cccccccchhHHHHHH-----hh------CCCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEE
Confidence 455666554 2477899988888888 43 2678999999999984 55555677999999988888
Q ss_pred EecCCC
Q psy2375 256 VNCNLQ 261 (929)
Q Consensus 256 vn~N~~ 261 (929)
+|+|+.
T Consensus 482 ~NN~Gi 487 (571)
T KOG1185|consen 482 GNNNGI 487 (571)
T ss_pred ecCCcc
Confidence 888876
No 199
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.52 E-value=0.00022 Score=95.80 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=47.8
Q ss_pred cccCch--hHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHc--CCCeEEEEEecCCCcc
Q psy2375 190 TVSMGL--GPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAARE--KLDNLIMIVNCNLQRL 263 (929)
Q Consensus 190 tgs~G~--g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~--~L~nli~vvn~N~~~i 263 (929)
-|+||. +++.|+|.+ ++ . +++|+|++|||++. +....|..|.+. +|+=+|+|+||+.+.+
T Consensus 758 ~G~mG~~G~lpaAIGaa-----la-----~--~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi 821 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFA-----VG-----C--NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAI 821 (1655)
T ss_pred CCccchhhhHHHHHHHh-----hc-----C--CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHh
Confidence 388999 599999998 42 1 57899999999997 778889999884 8875677777776543
No 200
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.49 E-value=0.00019 Score=66.44 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=41.9
Q ss_pred ceee-eeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCc
Q psy2375 867 EVST-VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK 915 (929)
Q Consensus 867 ~V~~-~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~ 915 (929)
.|.. ++++.|+.|++||++++||++|+..+|.||.+|+|.++..+..+.
T Consensus 30 ~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 30 DIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred CEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3444 455669999999999999999999999999999999998776654
No 201
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=97.47 E-value=0.0064 Score=73.64 Aligned_cols=227 Identities=18% Similarity=0.136 Sum_probs=135.9
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t 640 (929)
+...+++ .=+|..++++.+ |.|..| .+.+..|-+ =|+.-+.|.++.++-...|-|++.+.-++. ...-+|
T Consensus 236 ~~~~~~q-~E~E~aA~~~a~----GAs~aG--~Ra~taTSg-~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gp--stg~~t 305 (562)
T TIGR03710 236 FGVVVVQ-AEDEIAAINMAI----GASYAG--ARAMTATSG-PGFALMTEALGLAGMTETPLVIVDVQRGGP--STGLPT 305 (562)
T ss_pred hCcEEEe-eccHHHHHHHHH----hHHhcC--CceeecCCC-CChhHhHHHHhHHHhccCCEEEEEcccCCC--CCCCCC
Confidence 3344554 589999888733 345566 777765544 345566777765555777766665544322 223357
Q ss_pred CCChhhHHHHhcCC----CcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC----CCCCCCCCC---C-------
Q psy2375 641 HEDGHSHVLASTIP----NCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM----NENYSHPGL---K------- 702 (929)
Q Consensus 641 Hq~~ed~~l~r~iP----nl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~----~e~~~~p~~---~------- 702 (929)
+.+..|+.+.+.-- .+.|++|++..|+..+...|++--..=.-||+++.... .++...|.. +
T Consensus 306 ~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~ 385 (562)
T TIGR03710 306 KTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKV 385 (562)
T ss_pred CccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhccccccccc
Confidence 87778877766432 37999999999999999888754211122365544211 111111110 0
Q ss_pred ----ccc-----c-cc----cccc----eEEEe-----------------------------c-cC----Cc---CCCCc
Q psy2375 703 ----KGQ-----E-KG----IIKG----LYLLK-----------------------------N-HN----NE---KSKLK 727 (929)
Q Consensus 703 ----~~~-----~-~~----i~~G----~y~l~-----------------------------~-g~----~~---~~g~d 727 (929)
... . .+ ...| .+.+. . .. .. .+..+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~ 465 (562)
T TIGR03710 386 LEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDAD 465 (562)
T ss_pred ccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCC
Confidence 000 0 00 0000 00000 0 00 00 11357
Q ss_pred EEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecc
Q psy2375 728 VQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDY 806 (929)
Q Consensus 728 v~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~ 806 (929)
+.||++|+....+. |.+.|+++ |+++.++.+.++.||..+. +.+.+++. ..|+++|..
T Consensus 466 ~~iv~~Gs~~~~~~eav~~lr~~-G~kvg~l~~~~~~PfP~~~-------------------i~~~l~~~-k~v~VvE~n 524 (562)
T TIGR03710 466 VLVIGWGSTYGAIREAVERLRAE-GIKVALLHLRLLYPFPKDE-------------------LAELLEGA-KKVIVVEQN 524 (562)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhc-CCeEEEEEeCeecCCCHHH-------------------HHHHHhcC-CEEEEEccC
Confidence 99999999999999 99999998 9999999999999997643 35666666 578888887
Q ss_pred cc-hhHHHHHhhc
Q psy2375 807 MR-LFAEQVRAFI 818 (929)
Q Consensus 807 ~~-~~~~~i~~~l 818 (929)
.. -+...|+..+
T Consensus 525 ~~Gql~~~v~~~~ 537 (562)
T TIGR03710 525 ATGQLAKLLRAET 537 (562)
T ss_pred hhhhHHHHHHHHh
Confidence 33 3455555554
No 202
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.47 E-value=9.9e-05 Score=70.02 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=36.4
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCC
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G 913 (929)
+.|++|++||++++||++|+..+|.||.+|+|.++..+..
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 6699999999999999999999999999999999965444
No 203
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.33 E-value=0.0095 Score=68.85 Aligned_cols=206 Identities=13% Similarity=0.121 Sum_probs=126.8
Q ss_pred ccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHH
Q psy2375 570 INEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVL 649 (929)
Q Consensus 570 IaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l 649 (929)
=+|+.++++.+ |-|..| .+.|..|-+ =|+.-+.|.++.++-...|-|+... .|..- +-+++|.+..|+..
T Consensus 56 E~E~aA~~~ai----GAs~aG--aRa~TaTSg-~Gl~lm~E~l~~aa~~~lPiVi~~~--~R~~p-~~~~~~~~q~D~~~ 125 (390)
T PRK08366 56 ESEHSAMAACI----GASAAG--ARAFTATSA-QGLALMHEMLHWAAGARLPIVMVDV--NRAMA-PPWSVWDDQTDSLA 125 (390)
T ss_pred CCHHHHHHHHH----HHHhhC--CCeEeeeCc-ccHHHHhhHHHHHHhcCCCEEEEEe--ccCCC-CCCCCcchhhHHHH
Confidence 48999887733 345566 777776644 3567778887766666777555443 33322 35688877788765
Q ss_pred HhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec-----CCCCCCCCC-------CCc--------cccccc
Q psy2375 650 ASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV-----MNENYSHPG-------LKK--------GQEKGI 709 (929)
Q Consensus 650 ~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~-----~~e~~~~p~-------~~~--------~~~~~i 709 (929)
.+.. ++.++.|+|..|+.-+...|++--..=+-||+++... ..++...|. ++. +.+.++
T Consensus 126 ~~d~-g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~ 204 (390)
T PRK08366 126 QRDT-GWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPI 204 (390)
T ss_pred Hhhc-CEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCc
Confidence 5544 7899999999999999888875321112236655421 111110010 000 000000
Q ss_pred ----c---cceEEEe---------------------------c-cCC-c---CCCCcEEEEEeChhHHHHH-HHHHHhcc
Q psy2375 710 ----I---KGLYLLK---------------------------N-HNN-E---KSKLKVQLIGSGAILREIL-ASKILLQE 749 (929)
Q Consensus 710 ----~---~G~y~l~---------------------------~-g~~-~---~~g~dv~Lia~G~~v~~al-AAe~L~~~ 749 (929)
. .+.+..+ + ... . -+..|+.||++|+....+. |.+.|+++
T Consensus 205 s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~ 284 (390)
T PRK08366 205 SVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKE 284 (390)
T ss_pred ccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhc
Confidence 0 0000000 0 000 0 0135899999999999999 99999998
Q ss_pred CCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEeccc
Q psy2375 750 WDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYM 807 (929)
Q Consensus 750 ~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~ 807 (929)
|+++.++.+.++.||..+. +.+++++. ..|+++|...
T Consensus 285 -G~kvg~l~i~~~~PfP~~~-------------------i~~~l~~~-k~ViVvE~n~ 321 (390)
T PRK08366 285 -GYKVGYAKVRWFRPFPKEE-------------------LYEIAESV-KGIAVLDRNF 321 (390)
T ss_pred -CCceeeEEEeeecCCCHHH-------------------HHHHHhcC-CEEEEEeCCC
Confidence 9999999999999997643 35677776 6788888764
No 204
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.33 E-value=0.0003 Score=69.99 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=41.7
Q ss_pred cceeeeeee-cCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC
Q psy2375 866 VEVSTVMVK-IGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914 (929)
Q Consensus 866 g~V~~~~vk-~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~ 914 (929)
|.|..+..+ .|++|++||++++||++|+..+|.||.+|+|+++..+.-+
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 345566555 8999999999999999999999999999999998766443
No 205
>KOG0368|consensus
Probab=97.33 E-value=0.00028 Score=88.36 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=60.9
Q ss_pred CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 862 DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 862 ~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+-.+|++.+|.|+.|+.|..||+-++||.|||.+++.|+.+|+| +...++|+.+.+|++|+.++.
T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~l 754 (2196)
T KOG0368|consen 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTL 754 (2196)
T ss_pred CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeec
Confidence 46789999999999999999999999999999999999999976 778899999999999999863
No 206
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.32 E-value=0.00044 Score=67.46 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=45.4
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEE---eecCCCccc---CCC-eEEEEee
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREI---KVKVGDKIS---KDS-QILILEE 927 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i---~~~~G~~V~---~G~-~L~~i~~ 927 (929)
+.|++|++||+++.||++|...+|.||.+|+|.++ ..+..+.+. .|+ -|++|..
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 57999999999999999999999999999999999 444455665 554 7777764
No 207
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.18 E-value=0.00074 Score=64.50 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=34.3
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEe
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~ 909 (929)
+.|++|++||++++||++|+..+|.||.+|+|.++.
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 669999999999999999999999999999999984
No 208
>KOG1184|consensus
Probab=97.15 E-value=0.0023 Score=74.09 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=54.3
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG 265 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg 265 (929)
--||.|.....++|.| . ..++++|+.|+|||+++ ++..-++.+.+++|+-.||++|+|++.|.-
T Consensus 413 ~wgsIG~svga~lG~a-----~------a~~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTIE~ 476 (561)
T KOG1184|consen 413 QWGSIGWSVGATLGYA-----Q------AAPEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTIEV 476 (561)
T ss_pred EEeeccccchhhhhhh-----h------ccCCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEEEE
Confidence 4478888888888888 3 23458999999999999 677788999999999999999999998863
No 209
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.97 E-value=0.001 Score=64.88 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=36.2
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCC
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G 913 (929)
+.|++|++||+++.||++|+..+|.||.+|+|.++.-+.-
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~ 84 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE 84 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence 5799999999999999999999999999999999864443
No 210
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.95 E-value=0.0012 Score=53.62 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=31.8
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
+..|.||.+|+|.++.+++|+.|+.|++|++++.+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 35799999999999999999999999999999753
No 211
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.88 E-value=0.0024 Score=74.38 Aligned_cols=63 Identities=17% Similarity=0.368 Sum_probs=55.1
Q ss_pred ccceeeee-eecCCeecCCCeEEEEEec------------------------------------------------ceee
Q psy2375 865 EVEVSTVM-VKIGDTIKIDQSLLVVESE------------------------------------------------KVSM 895 (929)
Q Consensus 865 eg~V~~~~-vk~Gd~V~~Gd~l~~iEt~------------------------------------------------K~~~ 895 (929)
.|.|.+.+ ++.||.|++||+|++|++- ....
T Consensus 131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~ 210 (409)
T PRK09783 131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF 210 (409)
T ss_pred CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence 48899998 9999999999999999831 0135
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|+||.+|+|.+..+++|+.|.+|++|+.|..
T Consensus 211 ~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d 242 (409)
T PRK09783 211 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 242 (409)
T ss_pred EEECCCCeEEEEEECCCCCEECCCCeEEEEEc
Confidence 79999999999999999999999999999853
No 212
>KOG0451|consensus
Probab=96.80 E-value=0.21 Score=58.43 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhccc-cC----CCCcEEEEE--EcCCccC-CcccHHHHHHHH--HcCCCeEEEEEecCCCcccccc
Q psy2375 198 LTAIHQARFLKYLHARKI-TN----TINRKIWIL--CGDGEMD-EPESISEISMAA--REKLDNLIMIVNCNLQRLDGPV 267 (929)
Q Consensus 198 ~~Aig~A~a~kyl~~r~~-~~----~~~~~v~~~--~GDGe~~-eg~~~eAl~~A~--~~~L~nli~vvn~N~~~idg~v 267 (929)
+.|+|-++++..-...|- .+ ....+|+|+ -|||++. .|..||.++++- +..+.--+-+|-+|......|-
T Consensus 290 PVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~ 369 (913)
T KOG0451|consen 290 PVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPG 369 (913)
T ss_pred chhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcc
Confidence 378898988876433331 11 123466665 4999975 699999998864 3333333444555666665554
Q ss_pred cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHH
Q psy2375 268 RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMI 347 (929)
Q Consensus 268 ~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v 347 (929)
.. +.....-....+..+..||.|
T Consensus 370 ~r-GRSs~ycsDiaK~~~~pviHV-------------------------------------------------------- 392 (913)
T KOG0451|consen 370 DR-GRSSAYCSDIAKSIQAPVIHV-------------------------------------------------------- 392 (913)
T ss_pred cc-cccchhhhHHHHHhCCCEEEe--------------------------------------------------------
Confidence 32 233444556667788999998
Q ss_pred hhcCccccccCCCCCCcHHHHHHHHHHHHhCC---CCCeEEEEeeecccCCcc
Q psy2375 348 EEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNK---DKPTVLLIKSIKGYGLGR 397 (929)
Q Consensus 348 ~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~---~~P~vI~~~T~KG~G~~~ 397 (929)
+|.|+++|.+|-..|.+.. .|-++|-..+.+-||+-.
T Consensus 393 -------------NGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHne 432 (913)
T KOG0451|consen 393 -------------NGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNE 432 (913)
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhcccc
Confidence 8899999999988775531 456899999999999854
No 213
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=96.80 E-value=0.051 Score=63.04 Aligned_cols=210 Identities=11% Similarity=0.132 Sum_probs=128.3
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
..+++. =+|+.++++.+ |-|..| .+.|..|-+ =|+.-+.|.++.++-...|.|+.++ +|. ++.-..+|.
T Consensus 51 ~~~v~~-EsE~aA~~~~~----GAs~aG--aRa~TaTS~-~Gl~lm~E~l~~aag~~lP~V~vv~--~R~-~~~p~~i~~ 119 (394)
T PRK08367 51 AEFIKV-ESEHSAISACV----GASAAG--VRTFTATAS-QGLALMHEVLFIAAGMRLPIVMAIG--NRA-LSAPINIWN 119 (394)
T ss_pred eEEEEe-CCHHHHHHHHH----HHHhhC--CCeEeeecc-chHHHHhhHHHHHHHccCCEEEEEC--CCC-CCCCCCcCc
Confidence 344443 58999888733 344566 777765544 4567778888777777888777653 332 233235676
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCC--ceEEEEEecC-----CCCCCCCCC-------Cc-----
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQ--EDVFYYITVM-----NENYSHPGL-------KK----- 703 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~--~~v~~rl~~~-----~e~~~~p~~-------~~----- 703 (929)
+..|....|-.+ +.++.|++..|+.-+...|++--..+. -||++..... .++...|.. +.
T Consensus 120 d~~D~~~~rd~g-~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~ 198 (394)
T PRK08367 120 DWQDTISQRDTG-WMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKH 198 (394)
T ss_pred chHHHHhccccC-eEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccc
Confidence 666755555443 777889999999999888876432111 2366544321 111111110 00
Q ss_pred ---ccccccc------cceE---------------------------------E-EeccCCcCCCCcEEEEEeChhHHHH
Q psy2375 704 ---GQEKGII------KGLY---------------------------------L-LKNHNNEKSKLKVQLIGSGAILREI 740 (929)
Q Consensus 704 ---~~~~~i~------~G~y---------------------------------~-l~~g~~~~~g~dv~Lia~G~~v~~a 740 (929)
+....+. .+.| . +.... -+..|+.||++|+....+
T Consensus 199 ~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg--~eDAe~viV~~GS~~~~~ 276 (394)
T PRK08367 199 AYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYR--TEDAEIIFVTMGSLAGTL 276 (394)
T ss_pred cccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeC--CCCCCEEEEEeCccHHHH
Confidence 0000000 0011 0 00000 023689999999999999
Q ss_pred H-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEeccc
Q psy2375 741 L-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYM 807 (929)
Q Consensus 741 l-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~ 807 (929)
. |.+.|+++ |+++.++-+.++.||..+. +.+++++. ..|+++|-..
T Consensus 277 keav~~LR~~-G~kVGllri~~~rPFP~~~-------------------i~~~l~~~-k~ViVvE~n~ 323 (394)
T PRK08367 277 KEFVDKLREE-GYKVGAAKLTVYRPFPVEE-------------------IRALAKKA-KVLAFLEKNI 323 (394)
T ss_pred HHHHHHHHhc-CCcceeEEEeEecCCCHHH-------------------HHHHHccC-CEEEEEeCCC
Confidence 9 99999998 9999999999999997643 35677766 6778777653
No 214
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.68 E-value=0.003 Score=71.14 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=30.8
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|+||.+|+|..+.+++|+.|..|++|+.|.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 479999999999999999999999999999864
No 215
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=96.62 E-value=0.0034 Score=70.43 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=56.1
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecc---------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEK--------------------------------------------------- 892 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K--------------------------------------------------- 892 (929)
..|.|.+++++.||.|++||+|+.|++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999998620
Q ss_pred -------------------eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 893 -------------------VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 -------------------~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-...|+||.+|+|.++.+++|+.|.+|++|+.|..
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~ 187 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVK 187 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEe
Confidence 02579999999999999999999999999998753
No 216
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.53 E-value=0.0041 Score=70.67 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=30.9
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|+||.+|+|.++.+++|+.|.+|++|+.|.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~ 241 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLID 241 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEec
Confidence 3469999999999999999999999999999854
No 217
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=96.51 E-value=0.0032 Score=70.14 Aligned_cols=64 Identities=17% Similarity=0.324 Sum_probs=56.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecce--------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKV-------------------------------------------------- 893 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~-------------------------------------------------- 893 (929)
..|.|.+++++.||.|++||+|+.++....
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 458999999999999999999999974211
Q ss_pred ---------------------eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 ---------------------SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ---------------------~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|+||.+|+|..+.+.+|+.|..|++|+.|..
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 167 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVD 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence 2369999999999999999999999999999864
No 218
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.48 E-value=0.011 Score=70.48 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=74.0
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc---
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP--- 266 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~--- 266 (929)
|-.||.|++.|-|++ + ...++++++||||.+----. -+|-+|...+.+.+++|+|+---.+.|.
T Consensus 427 t~~mGssig~a~g~~-----~-------~~~k~~va~iGDsTF~HsGi-~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~ 493 (640)
T COG4231 427 TTMMGSSIGIAGGLS-----F-------ASTKKIVAVIGDSTFFHSGI-LALINAVYNKANILVVVLDNRTTAMTGGQPH 493 (640)
T ss_pred hhhccchhhhccccc-----c-------ccCCceEEEeccccccccCc-HHHHHHHhcCCCeEEEEEeccchhccCCCCC
Confidence 344666666666665 1 22389999999999864333 3488999999765555554432222221
Q ss_pred ----ccccc--cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 267 ----VRGNS--KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 267 ----v~~~~--~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+.+++ ...-.++..-|+.|..-+++.
T Consensus 494 pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~v------------------------------------------------ 525 (640)
T COG4231 494 PGTGVAAEGTKSTAIVIEEVVRAMGVEDVETV------------------------------------------------ 525 (640)
T ss_pred CCcccccCCCccceeEhhHhhhhcCceeeecc------------------------------------------------
Confidence 11111 111234555566666555541
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
|=+|.+++.+++++|++.. +|.||+++-
T Consensus 526 --------------------dp~~~~~~~~~~keale~~-gpsViiak~ 553 (640)
T COG4231 526 --------------------DPYDVKELSEAIKEALEVP-GPSVIIAKR 553 (640)
T ss_pred --------------------CCcchHHHHHHHHHHhcCC-CceEEEEcC
Confidence 4579999999999999984 599999764
No 219
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.034 Score=63.81 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=79.0
Q ss_pred ccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecC-CCcc--
Q psy2375 187 QFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCN-LQRL-- 263 (929)
Q Consensus 187 ~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N-~~~i-- 263 (929)
++.-.-||.-++-++|.- + ...++-|++++|||+.. +..--|..+-.++.. +++|+=|| ++..
T Consensus 440 EYgfSCMGYEiaG~lG~K-----~------a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~K-i~Vvl~DN~GyGCIn 505 (617)
T COG3962 440 EYGFSCMGYEIAGGLGAK-----A------AEPDREVYVMVGDGSYM--MLNSELATSVMLGKK-IIVVLLDNRGYGCIN 505 (617)
T ss_pred eecccccccccccccccc-----c------CCCCCeEEEEEcccchh--hhhHHHHHHHHcCCe-EEEEEECCCCcchhh
Confidence 344455888777776654 2 34578999999999987 566667777778864 77777776 2211
Q ss_pred --cccccccc-------------cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCC
Q psy2375 264 --DGPVRGNS-------------KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKN 328 (929)
Q Consensus 264 --dg~v~~~~-------------~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~ 328 (929)
.--+++.. -+.=++....+++|-.+.||
T Consensus 506 ~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv------------------------------------- 548 (617)
T COG3962 506 RLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKV------------------------------------- 548 (617)
T ss_pred hhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEec-------------------------------------
Confidence 10111100 01113456666777777776
Q ss_pred chhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 329 SDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 329 g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
+++++|.+|++.|+.+ .++|||.++|.
T Consensus 549 ----------------------------------~~i~eL~aAL~~Ak~~-~~ttvi~I~t~ 575 (617)
T COG3962 549 ----------------------------------GTIEELEAALADAKAS-DRTTVIVIDTD 575 (617)
T ss_pred ----------------------------------CCHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence 4899999999999987 78999999986
No 220
>PRK12784 hypothetical protein; Provisional
Probab=96.23 E-value=0.017 Score=50.47 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=59.0
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecc-eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEK-VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K-~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
--.|+|.++++.+++.|-+.++|+.|+++. ....|.--++|.|..+.+++||.|..+..|+.++++
T Consensus 11 ~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 11 SYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred ccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 356899999999999999999999999864 455577799999999999999999999999999865
No 221
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.11 E-value=0.0089 Score=69.24 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.6
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|+||.+|+|..+.+++|+.|..|++|+.|.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~ 248 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVP 248 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEe
Confidence 479999999999999999999999999998854
No 222
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.03 E-value=0.01 Score=67.04 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.7
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|+||.+|+|..+.+.+|+.|..|++|+.|..
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~ 236 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSL 236 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEec
Confidence 579999999999999999999999999998853
No 223
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=95.94 E-value=0.056 Score=60.16 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=42.5
Q ss_pred ccCcccC--chhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCC-ccCCcccHHHHHHHHHcCCCeEEEEEecC
Q psy2375 187 QFPTVSM--GLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDG-EMDEPESISEISMAAREKLDNLIMIVNCN 259 (929)
Q Consensus 187 ~f~tgs~--G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDG-e~~eg~~~eAl~~A~~~~L~nli~vvn~N 259 (929)
..+..|. |-.++.|.|+.+| ++ +..||++-||| .++.| ...+..|.+.+. |+++||-||
T Consensus 64 ~~~~~hs~~gra~a~atGik~A-----~~------~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~-dit~iv~DN 125 (294)
T COG1013 64 NPPWVHSLHGRAAAVATGIKLA-----NP------ALSVIVIGGDGDAYDIG--GNHLIHALRRNH-DITYIVVDN 125 (294)
T ss_pred cCCceeeccCcchhhHHHHHHh-----cc------CCeEEEEecchhHhhhh--hHHHHHHHHcCC-CeEEEEECC
Confidence 3445444 4456677777733 32 34899999999 77866 677889999996 488888887
No 224
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=95.93 E-value=0.011 Score=68.20 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=53.9
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecc---------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEK--------------------------------------------------- 892 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K--------------------------------------------------- 892 (929)
-.|.|.++++++||.|++||+|+.|+...
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45889999999999999999999997621
Q ss_pred --------------------eeeeeecCCCEEEEEEeecCCCcccCC--CeEEEEe
Q psy2375 893 --------------------VSMEIPSSHNGVVREIKVKVGDKISKD--SQILILE 926 (929)
Q Consensus 893 --------------------~~~~I~Ap~~G~v~~i~~~~G~~V~~G--~~L~~i~ 926 (929)
-...|+||++|+|.+..+++|+.|..| ++|+.|.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 024799999999999999999999986 4888775
No 225
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=95.89 E-value=0.012 Score=51.28 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.8
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~ 35 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLES 35 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 359999999999999999999999999999875
No 226
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=95.59 E-value=0.025 Score=54.83 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=32.3
Q ss_pred eecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeec
Q psy2375 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911 (929)
Q Consensus 873 vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~ 911 (929)
.+.|+.|++|++++.||+.|...++.||.+|+|.++.-+
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 466899999999999999999999999999999998643
No 227
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=95.41 E-value=0.025 Score=65.69 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=52.9
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecc---------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEK--------------------------------------------------- 892 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K--------------------------------------------------- 892 (929)
-.|.|.+..+++||.|++||+|+.|+...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 34899999999999999999999997420
Q ss_pred --------------------eeeeeecCCCEEEEEEeecCCCcccCCCe--EEEE
Q psy2375 893 --------------------VSMEIPSSHNGVVREIKVKVGDKISKDSQ--ILIL 925 (929)
Q Consensus 893 --------------------~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~--L~~i 925 (929)
-...|+||++|+|.+..+++|+.|.+|++ |+.|
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 02479999999999999999999999985 6665
No 228
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=95.36 E-value=0.51 Score=56.71 Aligned_cols=228 Identities=17% Similarity=0.148 Sum_probs=129.1
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCee-ecCCCC-C
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTT-INGEGL-Q 640 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~-~g~dG~-t 640 (929)
+-+++.+.||.-|+.+ |+| -+..| .+-++.+ =.-|+.++.|-+... .| .|+.||+. +-+|-+ -
T Consensus 58 ~vy~e~s~NEkvA~e~--a~G--A~~~G--~ral~~m-KhVGlNvAsDpl~s~-ay-------~Gv~GGlviv~aDDpg~ 122 (640)
T COG4231 58 DVYFEWSLNEKVALET--AAG--ASYAG--VRALVTM-KHVGLNVASDPLMSL-AY-------AGVTGGLVIVVADDPGM 122 (640)
T ss_pred cEEEEecccHHHHHHH--HHH--hhhcC--ceeeEEe-cccccccchhhhhhh-hh-------cCccccEEEEEccCCCc
Confidence 6899999999988776 444 34456 4444321 144577888854322 12 12333332 222222 2
Q ss_pred C--CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCC---------CCC-CCcccccc
Q psy2375 641 H--EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYS---------HPG-LKKGQEKG 708 (929)
Q Consensus 641 H--q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~---------~p~-~~~~~~~~ 708 (929)
| |.-+|--++...-.+-|++|+|..|+..+++.|++--.--+-+|.+|.+....... .|. .+... +.
T Consensus 123 ~SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~-~~ 201 (640)
T COG4231 123 HSSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDE-FF 201 (640)
T ss_pred ccccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccc-cc
Confidence 3 22333334444556679999999999999998885321123458888754321000 011 11100 00
Q ss_pred cc-cceEEEeccCC----------------------c------CCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEE
Q psy2375 709 II-KGLYLLKNHNN----------------------E------KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWS 758 (929)
Q Consensus 709 i~-~G~y~l~~g~~----------------------~------~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvs 758 (929)
.. .+.|++.+... . .+..++=||++|.....+. |-+.| |+...++-
T Consensus 202 ~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l----gl~~~~lk 277 (640)
T COG4231 202 IKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL----GLDDELLK 277 (640)
T ss_pred cCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc----CCCceeEE
Confidence 00 12233211100 0 1125799999999887776 65444 88899999
Q ss_pred cccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccC-CCcEEEEecC
Q psy2375 759 ATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPK-GRIYKVLGTD 830 (929)
Q Consensus 759 v~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~-~~~~~~lG~d 830 (929)
+-+..||.++.+ ..-+++. ..|+.|||.---+=.|++..+.+ +.+....|-|
T Consensus 278 lg~~~Plp~~~i-------------------~~F~~g~-~~vlVVEE~~P~iE~qv~~~l~~~g~~v~v~GKd 330 (640)
T COG4231 278 LGTPYPLPEQLI-------------------ENFLKGL-ERVLVVEEGEPFIEEQVKALLYDAGLPVEVHGKD 330 (640)
T ss_pred ecCCcCCCHHHH-------------------HHHHhcC-cEEEEEecCCchHHHHHHHHHHhcCCceEeeccc
Confidence 988888876543 3444554 57888888644455778887754 3455566764
No 229
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=95.35 E-value=0.027 Score=65.04 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=53.6
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecc---------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEK--------------------------------------------------- 892 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K--------------------------------------------------- 892 (929)
-.|.|.+.++++||.|++||+|+.|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 35889999999999999999999998420
Q ss_pred --------------------eeeeeecCCCEEEEEEeecCCCcccCCC--eEEEEe
Q psy2375 893 --------------------VSMEIPSSHNGVVREIKVKVGDKISKDS--QILILE 926 (929)
Q Consensus 893 --------------------~~~~I~Ap~~G~v~~i~~~~G~~V~~G~--~L~~i~ 926 (929)
-...|+||++|+|.+..+++|+.|.+|+ +|+.|.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 203 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ 203 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence 1258999999999999999999999985 577663
No 230
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.29 E-value=0.64 Score=61.06 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=40.7
Q ss_pred CCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchh
Q psy2375 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 725 g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~ 770 (929)
..+++||++|+....+. |.+.|+++ |++|.++.++.+.||+.+.+
T Consensus 264 dAe~ViV~~GS~~~~~~eav~~Lr~~-G~kVGli~vr~~rPFp~e~l 309 (1165)
T TIGR02176 264 DAERVIIAMGSVAETIEETVDYLNAK-GEKVGLLKVRLYRPFSAETF 309 (1165)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhc-CCceeEEEEeEeCCCCHHHH
Confidence 45899999999999999 99999998 99999999999999987643
No 231
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.23 E-value=0.02 Score=55.60 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=35.4
Q ss_pred eecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeec
Q psy2375 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911 (929)
Q Consensus 873 vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~ 911 (929)
.+.|++|++|+.++.||+-|...+|.||.+|+|.++.-+
T Consensus 47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 467889999999999999999999999999999988643
No 232
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=95.23 E-value=0.043 Score=59.27 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=49.5
Q ss_pred cceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+-+.+..++.||.|++||+|+.|+. .+|+||.+|+|+ -++.+|-.|.+|.-|+.|++
T Consensus 172 ~Gi~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 172 DGIVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred CeEEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence 3455668999999999999999975 799999999875 45689999999999999985
No 233
>PRK06748 hypothetical protein; Validated
Probab=95.09 E-value=0.032 Score=50.34 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=30.6
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-|.||..|+|.++++++||.|+.||+|+.|++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 48999999999999999999999999999986
No 234
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.82 E-value=0.046 Score=62.77 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.1
Q ss_pred eeecCCCEEEEEEeecCCCcccCCC---eEEEEe
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDS---QILILE 926 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~---~L~~i~ 926 (929)
.|+||.+|+|.++.+..|+.|.+|+ +|+.|.
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~ 218 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA 218 (370)
T ss_pred EEECCCCcEEEeeecCCCcEeecccCCceEEEEe
Confidence 7999999999999999999998764 687764
No 235
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.70 E-value=0.043 Score=64.11 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=53.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecc---------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEK--------------------------------------------------- 892 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K--------------------------------------------------- 892 (929)
-.|.|.++++++||.|++||+|+.|....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45899999999999999999999996420
Q ss_pred --------------------eeeeeecCCCEEEEEEeecCCCcccCCC--eEEEEe
Q psy2375 893 --------------------VSMEIPSSHNGVVREIKVKVGDKISKDS--QILILE 926 (929)
Q Consensus 893 --------------------~~~~I~Ap~~G~v~~i~~~~G~~V~~G~--~L~~i~ 926 (929)
-...|+||++|+|....+++|+.|.+|+ +|+.|.
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~ 229 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence 0237999999999999999999999985 576653
No 236
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.62 E-value=0.042 Score=54.57 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.3
Q ss_pred eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 893 VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-...|+||..|++.++++++||.|+.||+||+||.
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 35679999999999999999999999999999984
No 237
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=94.45 E-value=0.055 Score=50.74 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=40.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeec
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~ 911 (929)
.-|.-.+..|+.||+|++||.|++.+. -+...|.||.+|+|+.|.-.
T Consensus 37 h~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 37 HIGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred cCCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence 346667889999999999999999974 56889999999999998643
No 238
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=94.27 E-value=1.4 Score=55.06 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=118.7
Q ss_pred CCceeeeecCCCC-CcCccccchhccccc-ccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccC
Q psy2375 513 GNRVVPILVDESR-TFGMEGLFRQIGIFS-QVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSN 590 (929)
Q Consensus 513 ~~rIv~i~aD~~~-s~gl~~~f~~~gi~~-~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G 590 (929)
+..|..-..|..| ||.... .-+.+ ..|..|.|-..-.. ..-.=.+.|...+|.+++++ =.|||.+-
T Consensus 583 G~~iRlsGqDs~RGTF~hRH----aVlhdq~~~~~y~PL~~l~~----~q~~f~v~nS~LSEeAvlgF----EYGYs~~~ 650 (906)
T COG0567 583 GHPIRLSGQDSGRGTFSHRH----AVLHDQKTGETYIPLNHLSK----GQGKFEVINSPLSEEAVLGF----EYGYSLAN 650 (906)
T ss_pred CCccccccccCCCcCccccc----eeeecccCccccChhhhccc----ccceEEEEechhhHHHHHhh----hhhhhhcC
Confidence 3444555678777 343322 22333 35677888542211 11122678999999997776 45688775
Q ss_pred CCceEEE---EeehhhH--HHhHHHHHHHhhh----hcCCcEEEEeecCCeeecCCCCCCCC--hhhHHHHhcCCCcEEE
Q psy2375 591 CIMIPFF---TFYSMFG--LQRIGDLAWLAGD----IRARGFLIGGTSGRTTINGEGLQHED--GHSHVLASTIPNCIPY 659 (929)
Q Consensus 591 ~~~iPf~---~~ys~F~--~qR~~d~i~~~~~----~~~~~v~i~~t~~~~~~g~dG~tHq~--~ed~~l~r~iPnl~v~ 659 (929)
..-++ .-|..|+ .|.+.||.-.++. .+. ++++.-.|| +.+-||.|-+ ++....+.+--||.|.
T Consensus 651 --p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~s-gLv~lLPHg---yEGQGPEHSSaRlER~LQLcaE~NmqV~ 724 (906)
T COG0567 651 --PKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMS-GLVMLLPHG---YEGQGPEHSSARLERFLQLCAENNMQVV 724 (906)
T ss_pred --CchhhhhhhhhcccccCCeeeeccccccHHHHHHHhc-CceEEccCC---CCCCCCcCccchhHHHHHhhHHhCCEEE
Confidence 33333 3444443 4444444212221 122 344445664 5788999954 5655556666699999
Q ss_pred ccCCHHHHHHHHHHHHhh-ccCCCceEEEEEecCCCCCCCCCCCcccccccccceE--EEeccCCcCCCCcEEEEEeChh
Q psy2375 660 DPTFAHEVAIIIHHGLHC-MISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLY--LLKNHNNEKSKLKVQLIGSGAI 736 (929)
Q Consensus 660 ~Pada~E~~~~l~~al~~-~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y--~l~~g~~~~~g~dv~Lia~G~~ 736 (929)
.|+.+...-.+++.-+.+ +. -| ..+.-+++ ..-+|.... ..+.+.+|.+ ++.+.....+.-.-+++++|-+
T Consensus 725 ~pstpaq~fHlLRrq~~r~~r--kP-LiimtPKs--lLR~~~a~S-~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKv 798 (906)
T COG0567 725 VPSTPAQYFHLLRRQALRDFR--KP-LIVMTPKS--LLRHKLAVS-SLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKV 798 (906)
T ss_pred ecCcHHHHHHHHHHHHhhccc--Cc-eEecChhh--hhhccccCC-chhhhchhhhhhhhccccccccceeeEEeeccch
Confidence 999999999999855443 32 12 22221221 011121111 1122223321 1112100001124577888865
Q ss_pred HHHHHHHHHHhccCC-CceEEEEcccccccccchh
Q psy2375 737 LREILASKILLQEWD-IDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 737 v~~alAAe~L~~~~G-I~a~Vvsv~s~~pLd~~~~ 770 (929)
-....+.. +++ | .++.++=+-.+-||..+.+
T Consensus 799 yydl~~~r--~~~-g~~dvaiiRiEqLyPfP~~~l 830 (906)
T COG0567 799 YYDLLEQR--EKD-GRDDVAIVRIEQLYPFPAKAL 830 (906)
T ss_pred HHHHHHHH--hhc-CCcceeEEeeecccCchHHHH
Confidence 54432333 444 4 3566777777777765543
No 239
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=94.20 E-value=0.064 Score=45.20 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=29.7
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|+||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 37899999999999999999999999999874
No 240
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.13 E-value=0.082 Score=45.83 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=30.4
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~ 34 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILES 34 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 58999999999999999999999999999875
No 241
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.06 E-value=0.21 Score=64.79 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=62.1
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecC-------CCc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCN-------LQR 262 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N-------~~~ 262 (929)
...||.+.++++|+|.| ..+++|+++||||-+---=.. ||..|...+ -|++++|=+| +|.
T Consensus 467 ~~~MG~~g~~~~G~a~~-----------~~~~~v~a~iGDgTf~HSG~~-al~~AV~~~-~nit~~IL~N~~tAMTGgQp 533 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPF-----------TETKHVFQNLGDGTYFHSGSL-AIRQAVAAG-ANITYKILYNDAVAMTGGQP 533 (1159)
T ss_pred eeccCccchhhceeccc-----------cCCCCEEEEeccchhhhcCHH-HHHHHHhcC-CCeEEEEEeCCcccccCCCC
Confidence 35788888899999943 124689999999997643333 788888888 4688888888 444
Q ss_pred ccccccccccchHHHHHHHhhCCceEEEEe
Q psy2375 263 LDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292 (929)
Q Consensus 263 idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~ 292 (929)
.+|++ .++.+....++.|.+-|.|+
T Consensus 534 ~~g~i-----~v~~i~~~~~a~Gv~~v~vv 558 (1159)
T PRK13030 534 VDGSI-----SVPQIARQVEAEGVSRIVVV 558 (1159)
T ss_pred CCCCC-----CHHHHHHHHHhCCCcEEEEe
Confidence 45432 35667778999999877763
No 242
>KOG4166|consensus
Probab=93.98 E-value=0.68 Score=52.89 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=84.4
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRG 269 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~ 269 (929)
-|.||.|++.|||.. .+ ..+..|+-+=||+++. +..--|..+..++++--|.|+|+-.|.+
T Consensus 523 LGtMGfGLPAAIGAs-----VA------~P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqGM------ 583 (675)
T KOG4166|consen 523 LGTMGFGLPAAIGAS-----VA------NPDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQGM------ 583 (675)
T ss_pred ccccccCcchhhccc-----cc------CcccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhhh------
Confidence 478999999999988 32 3467899999999987 7777888899999996677777765532
Q ss_pred cccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhh
Q psy2375 270 NSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEE 349 (929)
Q Consensus 270 ~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~ 349 (929)
...-..+|-.+.+.-. --++|.+.+|.+.
T Consensus 584 ----VtQWq~lFYe~rysHT-----------------------------------------------hQ~nPnf~klA~A 612 (675)
T KOG4166|consen 584 ----VTQWQDLFYEARYSHT-----------------------------------------------HQENPNFLKLAAA 612 (675)
T ss_pred ----HHHHHHHHHHhhhccc-----------------------------------------------cccCccHHHHHHh
Confidence 1122233333322211 1134666667776
Q ss_pred cCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 350 MSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 350 ~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
|+ |..|++- .-+++.+.+++-... .+|+++.+...+-
T Consensus 613 mG---ikalRV~--K~edL~~k~keflsT-kGPvLleV~v~~k 649 (675)
T KOG4166|consen 613 MG---IKALRVT--KKEDLREKIKEFLST-KGPVLLEVIVPHK 649 (675)
T ss_pred cC---Cchheee--hHHHHHHHHHHHhCC-CCCeEEEEEccCc
Confidence 66 4444332 346688888888776 5799888766543
No 243
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.80 E-value=0.12 Score=58.30 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.3
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|+||.+|+|..+.+.+|+.|.. ++|+.|.+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~ 236 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGD 236 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEec
Confidence 68899999999999999999987 78887653
No 244
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=93.77 E-value=0.057 Score=43.91 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=26.7
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecce
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKV 893 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~ 893 (929)
..|.|.+++++.||.|++||+|+++++...
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 468999999999999999999999987543
No 245
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=93.74 E-value=0.05 Score=60.70 Aligned_cols=26 Identities=38% Similarity=0.403 Sum_probs=20.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES 890 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt 890 (929)
..|.| ++++++||.|++||+|+.+++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 46899 999999999999999999986
No 246
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=93.64 E-value=1.5 Score=44.78 Aligned_cols=121 Identities=14% Similarity=0.065 Sum_probs=72.0
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
=|++.+ -.|.+++.+ |.| |+..+ +...+++.-+-.++.-+..-+..+-..+.|-++|.+..+.. .-+.|..|+
T Consensus 40 i~~i~~-~~E~~A~~~--A~g--~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~ 112 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFM--ADG--YARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSA-GEGRGAFQQ 112 (172)
T ss_dssp SEEEE--SSHHHHHHH--HHH--HHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGG-GTTTTSTTS
T ss_pred eeeecc-cCcchhHHH--HHH--HHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchh-hhccccccc
Confidence 477774 999997655 555 55433 25555555553454433332333333456655555544433 333677777
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEec
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITV 691 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~ 691 (929)
......+++.+-.. .+.+.++.++...++.|++.. .++..||||-++.
T Consensus 113 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 113 EIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp STHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred chhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 77777888877643 666677777777777777665 4444569988774
No 247
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=92.98 E-value=0.47 Score=61.59 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=62.2
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecC-------CC
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCN-------LQ 261 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N-------~~ 261 (929)
....||.+.++++|+|.| +.++||+++||||-+---= .=||..|...+. |++++|=+| +|
T Consensus 479 ~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG-~~al~~AV~~~~-nit~~IL~N~~vAMTGgQ 545 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG-LLAIRAAVAAGV-NITYKILYNDAVAMTGGQ 545 (1165)
T ss_pred eeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC-HHHHHHHHhcCC-CeEEEEEeCCcccccCCC
Confidence 456799999999999943 1247899999999875332 335777888784 688877777 34
Q ss_pred cccccccccccchHHHHHHHhhCCceEEEEe
Q psy2375 262 RLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292 (929)
Q Consensus 262 ~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~ 292 (929)
..+|.. ....+++..++.|..-|.|+
T Consensus 546 ~~~g~~-----~~~~i~~~~~a~GV~~v~vv 571 (1165)
T PRK09193 546 PVDGGL-----SVPQITRQLAAEGVKRIVVV 571 (1165)
T ss_pred CCCCCc-----chhhHHHHHHhCCCCEEEEe
Confidence 444441 35678999999999877763
No 248
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=92.22 E-value=0.43 Score=54.45 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 363 HDLRKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 363 hD~~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
-++..+.+++++|.++ ++|.+|++.+.
T Consensus 241 ~~~~~~~~~i~eA~~~-~Gps~I~v~sP 267 (365)
T cd03377 241 ANDNQTLKAFREAEAY-DGPSLIIAYSP 267 (365)
T ss_pred cCHHHHHHHHHHHhcC-CCCEEEEEEcc
Confidence 4788999999999988 68999999885
No 249
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.90 E-value=0.23 Score=48.69 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=31.8
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++++++|+.|+.||+|+.++.
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 5569999999999999999999999999999975
No 250
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=91.81 E-value=2.2 Score=42.72 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=68.2
Q ss_pred CCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 562 NGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 562 ~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
.-+++.+- .|++++.+ |. ||+..| .+.++.+..+ |+..+..-+..+.....|-+++++..+....+.....|
T Consensus 41 ~i~~i~~~-~E~~A~~~--A~--g~~r~~--~~v~~~~~gp-G~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~ 112 (160)
T cd07034 41 GGVVVQAE-SEHAAAEA--AI--GASAAG--ARAMTATSGP-GLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQ 112 (160)
T ss_pred CcEEEEeC-CHHHHHHH--HH--HHHhhC--CcEEEeeCcc-hHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCc
Confidence 35788775 99987765 44 477766 3333333333 35555555544444456666665544422111101234
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
|+.....+++. -.-++.|.++.|+..+++.|++.......||++++
T Consensus 113 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 113 SDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 44444444433 56778899999999999998876433224577765
No 251
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=91.75 E-value=0.19 Score=44.28 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=28.8
Q ss_pred eeecCCCEEEEE------EeecCCCcccCCCeEEEEeec
Q psy2375 896 EIPSSHNGVVRE------IKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 896 ~I~Ap~~G~v~~------i~~~~G~~V~~G~~L~~i~~~ 928 (929)
+|++|..|.+.+ +++++|+.|+.||+|+.|+..
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESS
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcC
Confidence 688888887666 999999999999999999853
No 252
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=91.58 E-value=0.87 Score=59.14 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=61.1
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecC-------CCc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCN-------LQR 262 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N-------~~~ 262 (929)
...||.+.++++|+|.| +.+++|+++||||-+---= .=||..|...+ -|++++|=+| +|.
T Consensus 494 ~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG-~~alr~AV~~~-~nit~kIL~N~avAMTGgQp 560 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG-LLAIRQAIAAG-VNITYKILYNDAVAMTGGQP 560 (1186)
T ss_pred eeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC-HHHHHHHHhcC-CCEEEEEEeCcchhccCCCC
Confidence 36688888888888832 2246899999999876432 33577788878 4688888888 444
Q ss_pred ccccccccccchHHHHHHHhhCCceEEEEe
Q psy2375 263 LDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292 (929)
Q Consensus 263 idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~ 292 (929)
.+|.+ .+..+....++.|.+-|.|+
T Consensus 561 ~~G~~-----~v~~i~~~~~a~GV~~v~vv 585 (1186)
T PRK13029 561 VDGVL-----TVPQIARQVHAEGVRRIVVV 585 (1186)
T ss_pred CCCcC-----CHHHHHHHHHhCCccEEEEe
Confidence 55532 35778889999999877763
No 253
>PRK07051 hypothetical protein; Validated
Probab=91.12 E-value=0.28 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=32.0
Q ss_pred eeeeeecCCCEEEEE-------EeecCCCcccCCCeEEEEee
Q psy2375 893 VSMEIPSSHNGVVRE-------IKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~-------i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.||..|++.+ +.+++|+.|+.|++|+.++.
T Consensus 2 ~~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~ 43 (80)
T PRK07051 2 AQHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEV 43 (80)
T ss_pred CccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEE
Confidence 356899999999999 99999999999999999875
No 254
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=91.03 E-value=2 Score=42.76 Aligned_cols=119 Identities=15% Similarity=0.037 Sum_probs=70.6
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
-+++.+ ..|.+++.+ |.| |+..+ +...++..-+--|+..+..-+..+...+.|-+++.+..+... ..-.+||
T Consensus 35 ~~~i~~-~~E~~A~~~--A~g--~~~~~-~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~--~~~~~~q 106 (155)
T cd07035 35 IRYILV-RHEQGAVGM--ADG--YARAT-GKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAG--EGRGAFQ 106 (155)
T ss_pred CEEEEe-CCHHHHHHH--HHH--HHHHH-CCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCcccc--ccCCccc
Confidence 477765 799997765 555 55543 245555444333344444444433334566555544444322 2223467
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC-CceEEEEEe
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN-QEDVFYYIT 690 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~-~~~v~~rl~ 690 (929)
...+..+++.+-. -.+.+.++.++...+..|++....+ ..|||+.++
T Consensus 107 ~~d~~~~~~~~~~-~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 107 EIDQVALFRPITK-WAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccCHHHHHHHHhc-eEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 7777778887754 4677788899999999998764332 346887653
No 255
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.93 E-value=0.64 Score=52.01 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=50.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe---cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES---EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt---~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
..+-+....++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..-.|..|+.|+.|
T Consensus 235 ~~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 235 ETSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred CCCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 456677888999999999999998854 4567899999999996654 56789999999876
No 256
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.91 E-value=0.32 Score=49.05 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=31.0
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++++++||.|+.||+|+.++.
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEa 117 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEA 117 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEee
Confidence 468999999999999999999999999999874
No 257
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.56 E-value=0.78 Score=51.04 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=47.0
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEe--cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVES--EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt--~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
.+-+.+..++.||.|++||+|+.|.. .....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 226 ~~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 226 QGGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred CCeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 34566779999999999999999954 1334789999999996554 66688899999876
No 258
>COG3608 Predicted deacylase [General function prediction only]
Probab=90.35 E-value=0.65 Score=52.27 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=49.7
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEec---ceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESE---KVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~---K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
..++-+++..++.||+|++||+|+.|-.. +...||+|+.+|+|.... ---.|+.|+.++.+-
T Consensus 261 Ap~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~ 325 (331)
T COG3608 261 APAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVG 325 (331)
T ss_pred cCCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeec
Confidence 45677899999999999999999998765 789999999999998775 233566666666553
No 259
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=90.29 E-value=0.38 Score=54.76 Aligned_cols=39 Identities=13% Similarity=0.349 Sum_probs=34.3
Q ss_pred EEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 887 VVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 887 ~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.||++ .+.|.++.+|+|.++.+++|+.|+.||+|+.|+.
T Consensus 43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 43 YIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred EEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 45554 6789999999999999999999999999999975
No 260
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=90.03 E-value=0.77 Score=52.77 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=49.1
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEe----cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVES----EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt----~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
...+-+....++.||.|++||+|++|-. .....+|.||.+|+|..+ ...-.|..|+.|+.|
T Consensus 294 Ap~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I 358 (359)
T cd06250 294 APAGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI 358 (359)
T ss_pred CCCCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence 3556788899999999999999999843 233444799999998655 477789999999876
No 261
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.80 E-value=0.97 Score=51.00 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=50.4
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEe----cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVES----EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt----~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...+-+....++.||.|++||+|++|-. .+...+|.||.+|+|.-.. ..-.|..|+.|+.|..
T Consensus 249 A~~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 249 APHPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLAA 315 (316)
T ss_pred cCCCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEec
Confidence 3456688899999999999999999854 2456789999999987554 4456889999988753
No 262
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=89.53 E-value=0.37 Score=54.29 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=32.3
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
...|.||.+|+|.++.+++|+.|+.||+|+.|+.+
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 66899999999999999999999999999999753
No 263
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=89.17 E-value=40 Score=39.03 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=69.2
Q ss_pred hhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCC
Q psy2375 559 EEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEG 638 (929)
Q Consensus 559 e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG 638 (929)
.+....+++. =+|++++++.++ -+..| -+.+-.|-+. |+..+.+.++.++-...|-|+....-++ ..-|
T Consensus 44 ~~~~~~~vq~-EsE~~a~s~v~G----A~~aG--ar~~TaTSg~-Gl~Lm~E~l~~a~~~~~P~Vi~~~~R~~---ps~g 112 (365)
T COG0674 44 AKVGGVFVQM-ESEIGAISAVIG----ASYAG--ARAFTATSGQ-GLLLMAEALGLAAGTETPLVIVVAQRPL---PSTG 112 (365)
T ss_pred hhcCcEEEEe-ccHHHHHHHHHH----HHhhC--cceEeecCCc-cHHHHHHHHHHHHhccCCeEEEEeccCc---CCCc
Confidence 3355677776 688888877433 34556 6666655443 3566677677666678887776554432 2345
Q ss_pred C-CCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHh
Q psy2375 639 L-QHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLH 676 (929)
Q Consensus 639 ~-tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~ 676 (929)
. ++.+..|+..+|-. ++..+.=++.+|+-.....|++
T Consensus 113 ~p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~ 150 (365)
T COG0674 113 LPIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFN 150 (365)
T ss_pred ccccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHH
Confidence 5 89999999888776 7766666677777666555543
No 264
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=88.96 E-value=0.74 Score=53.94 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=44.1
Q ss_pred eeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 868 V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|.-..++.++.-..=+..+.|++. -...|.++.+|+|.++.+++|+.|++||+|+.|++
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 333344444433333455677764 56779999999999999999999999999999975
No 265
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=88.79 E-value=0.81 Score=52.95 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=43.6
Q ss_pred eeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 872 MVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 872 ~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
.++.++....-+..+.+++.+ ...|.++.+|+|.++.+++|+.|++||+|+.|++.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 344444444444566777654 67799999999999999999999999999999853
No 266
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=88.45 E-value=1.3 Score=50.28 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=49.5
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe----cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES----EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt----~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
..+-+....++.||.|++||+|+.|=. .....+|.||.+|+|.... ..-.|..|+.|+.|
T Consensus 261 p~~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 261 EDDGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred CCCeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 456677889999999999999998854 2357789999999997754 56789999999876
No 267
>KOG3373|consensus
Probab=87.54 E-value=0.44 Score=47.72 Aligned_cols=58 Identities=29% Similarity=0.336 Sum_probs=45.3
Q ss_pred eccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCC
Q psy2375 852 KKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913 (929)
Q Consensus 852 Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G 913 (929)
|...+-+.||++ +-==+-++|.+|.+|+.++.+|+=|...+|.+|.+|+|++|.-+-.
T Consensus 71 It~~A~~~LGdv----v~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 71 ITDFAQEHLGDV----VYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred hhhhhhhhcCce----EEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 555666777753 1112246888999999999999999999999999999999975443
No 268
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=87.18 E-value=1.2 Score=51.63 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=42.5
Q ss_pred eeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 872 MVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 872 ~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
.++.++.-..-...+.|++. -...|.++.+|+|.++.+++|+.|+.||+|+.|++.
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 34444433333445667765 356899999999999999999999999999999753
No 269
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=87.17 E-value=0.88 Score=59.57 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=46.7
Q ss_pred cceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|...++.++.++.+..++.....+.. -...|.||.+|+|.++.+++||.|+.||+|++|+.
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 45566667777766666655443322 23469999999999999999999999999999985
No 270
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=86.92 E-value=1.1 Score=51.46 Aligned_cols=42 Identities=17% Similarity=0.425 Sum_probs=35.2
Q ss_pred EEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 885 LLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 885 l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-+.+++.+ +..|.|+.+|.|.++.+++|+.|+.||+|+.++.
T Consensus 53 ~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 53 TGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 33455443 4589999999999999999999999999999975
No 271
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=86.82 E-value=0.7 Score=53.65 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=32.3
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
...|.++.+|+|.++.+++|+.|+.||+|+.|++.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 67899999999999999999999999999999853
No 272
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=86.69 E-value=0.99 Score=50.17 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=34.0
Q ss_pred EEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 887 VVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 887 ~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.++..+ ...|.||.+|+|.++.+++|+.|+.|++|+.++.
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 344433 4679999999999999999999999999999974
No 273
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=86.49 E-value=0.76 Score=51.67 Aligned_cols=33 Identities=12% Similarity=0.400 Sum_probs=31.4
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.++.+|+|.++.+++||.|+.||+|+.++.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 579999999999999999999999999999985
No 274
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.42 E-value=0.98 Score=53.53 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=31.6
Q ss_pred eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 893 VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
-...|.++..|+|.++.|++||.|+.||+|+.+++.
T Consensus 58 ~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 58 ILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred ceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 355789999999999999999999999999998753
No 275
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=86.18 E-value=0.88 Score=53.69 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=38.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEee
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~ 910 (929)
..|...+..|++||+|++||+|++-... ....+.||.+|+|+.|..
T Consensus 36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 36 FVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 3455667899999999999999876532 678999999999999953
No 276
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.16 E-value=0.95 Score=52.45 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.5
Q ss_pred EEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 887 VVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 887 ~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|....-...|.||.+|+|.++.|++||.|+.|++|+.++.
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 45566667778999999999999999999999999999874
No 277
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=85.49 E-value=0.82 Score=51.68 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=31.9
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.|+.+|+|.++.+++||.|+.||+|+.++.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 5689999999999999999999999999999975
No 278
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=85.29 E-value=5 Score=43.31 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=64.6
Q ss_pred eEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCCh
Q psy2375 565 ILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDG 644 (929)
Q Consensus 565 ~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ 644 (929)
.+...-+|..++++ +.|.|..| .+.+..+-+ =|+.=+.|.+..++..+.|.|+++..-++ -+..+++|.+.
T Consensus 38 ~~~~~E~E~~A~~~----~~GAs~aG--~ra~t~ts~-~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g--~~~g~~~~~~q 108 (230)
T PF01855_consen 38 KVVQAESEHAAMEA----AIGASAAG--ARAMTATSG-PGLNLMAEPLYWAAGTELPIVIVVVQRAG--PSPGLSTQPEQ 108 (230)
T ss_dssp EEEE-SSHHHHHHH----HHHHHHTT----EEEEEEC-CHHHHHCCCHHHHHHTT--EEEEEEEB-----SSSB--SB-S
T ss_pred EEEEecchHHHHHH----HHHHHhcC--CceEEeecC-CcccccHhHHHHHHHcCCCEEEEEEECCC--CCCCCcCcCCh
Confidence 44556899998876 33455667 888875544 23444455454445567777777665442 23336688888
Q ss_pred hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 645 HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 645 ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
.|+...+ --++.++.|++..|+..+...|++--..=.-||+++..
T Consensus 109 ~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 109 DDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp HHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred hHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 8887777 55678999999999999988886531111224665543
No 279
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=84.87 E-value=1.2 Score=52.14 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=30.9
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
...|.|+.+|+|.++.+++|+.|++||+|+.|+.+
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 34789999999999999999999999999998753
No 280
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=84.87 E-value=1.7 Score=48.29 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=45.0
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEe--cceeeeeecCCCEEEEEEeecCCCcccCCCeE
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVES--EKVSMEIPSSHNGVVREIKVKVGDKISKDSQI 922 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt--~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L 922 (929)
...+-+.+..++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..-.|..|+.|
T Consensus 228 Ap~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 228 SPASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred cCCCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 3566788899999999999999999832 3456789999999997665 33566666665
No 281
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=84.83 E-value=1.7 Score=50.63 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=36.3
Q ss_pred EEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 885 LLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 885 l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+.+++ .-..+|.++.+|+|.++.+++|+.|+.||+|+.|++
T Consensus 57 ~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 57 PGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 345665 346789999999999999999999999999999985
No 282
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=83.90 E-value=1.2 Score=52.52 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=37.2
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEee
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~ 910 (929)
.|...+..|++||+|++||+|++-... ....+.||.+|+|+.|..
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 355667899999999999999965433 578899999999999953
No 283
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=83.50 E-value=2.1 Score=50.01 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=36.9
Q ss_pred CeEEEEEecc-eeeeeecCCCEEEEEEe-ecCCCcccCCCeEEEEee
Q psy2375 883 QSLLVVESEK-VSMEIPSSHNGVVREIK-VKVGDKISKDSQILILEE 927 (929)
Q Consensus 883 d~l~~iEt~K-~~~~I~Ap~~G~v~~i~-~~~G~~V~~G~~L~~i~~ 927 (929)
...+.|+.+. ....|.|+.+|.|.++. +.+||.|++||+|+.|+.
T Consensus 111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 3445666443 45689999999999998 999999999999999973
No 284
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=83.40 E-value=17 Score=36.64 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=64.6
Q ss_pred hhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhc-CCcEEEEeecCCeeec
Q psy2375 559 EEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIR-ARGFLIGGTSGRTTIN 635 (929)
Q Consensus 559 e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~-~~~v~i~~t~~~~~~g 635 (929)
...|++++. .++|+.-+++++|.+..- + +|++++.. .| .+-..++ +.+..++ .+-++++.-.+++..-
T Consensus 32 ~~~~~~~~~-----~gsmG~~lp~AiGa~~a~-~-~~Vv~i~GDG~f-~m~~~el-~t~~~~~~~~i~~vV~nN~~~g~~ 102 (157)
T cd02001 32 QDRDGHFYM-----LGSMGLAGSIGLGLALGL-S-RKVIVVDGDGSL-LMNPGVL-LTAGEFTPLNLILVVLDNRAYGST 102 (157)
T ss_pred hcCCCCEEe-----ecchhhHHHHHHHHHhcC-C-CcEEEEECchHH-HhcccHH-HHHHHhcCCCEEEEEEeCcccccc
Confidence 356788875 778876667788877653 3 67776666 45 2344553 6666663 5555565555544322
Q ss_pred CCCCCCCChhhHH-HHhcCCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 636 GEGLQHEDGHSHV-LASTIPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 636 ~dG~tHq~~ed~~-l~r~iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
+.-.+++..-|+. ++.. =++..+...+..|+...++.++..
T Consensus 103 ~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~el~~al~~a~~~ 144 (157)
T cd02001 103 GGQPTPSSNVNLEAWAAA-CGYLVLSAPLLGGLGSEFAGLLAT 144 (157)
T ss_pred CCcCCCCCCCCHHHHHHH-CCCceEEcCCHHHHHHHHHHHHhC
Confidence 2112222223333 3333 245556668899999999999875
No 285
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=83.14 E-value=50 Score=43.68 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=117.1
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceE-------EEEeeh-hhHHHhHHHHHHHhhhh---cCCcEEEEeecCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIP-------FFTFYS-MFGLQRIGDLAWLAGDI---RARGFLIGGTSGR 631 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iP-------f~~~ys-~F~~qR~~d~i~~~~~~---~~~~v~i~~t~~~ 631 (929)
+-+|+.|+||--++.+ +.| -+..| ..| |...|. --|.-|++|-+..+... ..-+++++...
T Consensus 74 ~i~~e~~~NEkvA~e~--a~G--aq~~~--~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gD-- 145 (1159)
T PRK13030 74 DIRFLPGINEELAATA--VLG--TQQVE--ADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGD-- 145 (1159)
T ss_pred ceEEeecCCHHHHHHH--HHH--hcccc--ccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEec--
Confidence 4789999999988776 333 34333 444 222232 23577999976433211 12334443222
Q ss_pred eeecCCCCCC--CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC-CC--------CCCC-C
Q psy2375 632 TTINGEGLQH--EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM-NE--------NYSH-P 699 (929)
Q Consensus 632 ~~~g~dG~tH--q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~-~e--------~~~~-p 699 (929)
|=..| |.-+|--++...-+|=|+.|++..|+..+...|+.--.--+-+|.++.+.. .+ +... +
T Consensus 146 -----Dpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~ 220 (1159)
T PRK13030 146 -----DHGCVSSSMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRW 220 (1159)
T ss_pred -----CCCCccCcCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccC
Confidence 11112 223333333334455699999999999999988743111233577776432 10 0000 0
Q ss_pred CCCcccccccccc---eEEE-----------------ec-cC-Cc-------CCCCcEEEEEeChhHHHHH-HHHHHhcc
Q psy2375 700 GLKKGQEKGIIKG---LYLL-----------------KN-HN-NE-------KSKLKVQLIGSGAILREIL-ASKILLQE 749 (929)
Q Consensus 700 ~~~~~~~~~i~~G---~y~l-----------------~~-g~-~~-------~~g~dv~Lia~G~~v~~al-AAe~L~~~ 749 (929)
..+.+..... .| .+.. +. .. .. ....++-||++|..-..+. |.+.|..+
T Consensus 221 ~~~~~f~~~~-~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~ 299 (1159)
T PRK13030 221 PAPEDFTPPA-GGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLD 299 (1159)
T ss_pred CCccccCCCc-ccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCC
Confidence 1111000000 00 0000 00 00 00 0125799999999998888 88887543
Q ss_pred CCC-----ceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhcc
Q psy2375 750 WDI-----DSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIP 819 (929)
Q Consensus 750 ~GI-----~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~ 819 (929)
++ .++|+-+-...||+.+. +.+-+.+. ..|++|||-.--+=+||+.++.
T Consensus 300 -~~~~~~lgirilKvgm~~PL~~~~-------------------i~~F~~g~-d~VlVVEE~~p~iE~Qlk~~l~ 353 (1159)
T PRK13030 300 -DADLRAAGIRIYKVGLSWPLEPTR-------------------LREFADGL-EEILVIEEKRPVIEQQIKDYLY 353 (1159)
T ss_pred -cccccccCccEEEeCCccCCCHHH-------------------HHHHHhcC-CEEEEEeCCchHHHHHHHHHHH
Confidence 32 35666665655876653 34455566 5789999874334478888775
No 286
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=83.08 E-value=2.1 Score=43.95 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=39.0
Q ss_pred ecCCeecC----CCeEEEEEecceeeeeecCCCEEEEEE-----------------------------------eecCCC
Q psy2375 874 KIGDTIKI----DQSLLVVESEKVSMEIPSSHNGVVREI-----------------------------------KVKVGD 914 (929)
Q Consensus 874 k~Gd~V~~----Gd~l~~iEt~K~~~~I~Ap~~G~v~~i-----------------------------------~~~~G~ 914 (929)
++-|.|-. |+.+++.=++ ..|.||++|+|..+ ++++||
T Consensus 36 ~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd 112 (169)
T PRK09439 36 DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQ 112 (169)
T ss_pred HCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCC
Confidence 34444444 7777766543 57888999988776 799999
Q ss_pred cccCCCeEEEEee
Q psy2375 915 KISKDSQILILEE 927 (929)
Q Consensus 915 ~V~~G~~L~~i~~ 927 (929)
.|++||+|++++.
T Consensus 113 ~Vk~G~~L~~~D~ 125 (169)
T PRK09439 113 RVKVGDPIIEFDL 125 (169)
T ss_pred EEeCCCEEEEEcH
Confidence 9999999999874
No 287
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=82.85 E-value=1.5 Score=44.37 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=30.0
Q ss_pred eeeecCCCEEEEE-------EeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVRE-------IKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~-------i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||..|++.. .++++||.|+.||+|+.|+.
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence 5699999999987 58999999999999999975
No 288
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=82.80 E-value=1.4 Score=53.69 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=30.7
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+|.||.+|+|.++.+++||.|+.||+|++++.
T Consensus 527 ~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEa 558 (596)
T PRK14042 527 DITVAIPGSIIAIHVSAGDEVKAGQAVLVIEA 558 (596)
T ss_pred eEecCcceEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 69999999999999999999999999999985
No 289
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=82.66 E-value=1.8 Score=47.27 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=34.6
Q ss_pred cceeeeeeecCCeecCCCeEEEEEecc--eeeeeecCCCEEEEEEeecC
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVESEK--VSMEIPSSHNGVVREIKVKV 912 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt~K--~~~~I~Ap~~G~v~~i~~~~ 912 (929)
|..-+..|++||+|++||+|++ || -.+-..||.+|+|.+|..-+
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 3345778999999999999985 44 35568999999999987533
No 290
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=81.93 E-value=2.3 Score=42.70 Aligned_cols=47 Identities=23% Similarity=0.170 Sum_probs=35.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceee-eeecCCCEEEEEEee
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSM-EIPSSHNGVVREIKV 910 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~-~I~Ap~~G~v~~i~~ 910 (929)
.+|..+-..+..|+.|.+||.++-+.|-|=++ -++||++|+|.=+.-
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e 134 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE 134 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence 46777788899999999999999999999655 499999999977653
No 291
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=81.38 E-value=9.8 Score=46.07 Aligned_cols=119 Identities=9% Similarity=-0.027 Sum_probs=67.8
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|+++..+ |. |||..- +...++ .++.+= ..-+.-=+..+-.-+.|-+.|.|...+...+. + .||
T Consensus 38 ~~i~~-~hE~~A~~~--Ad--gyar~t-g~~gv~~~t~GpG-~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~q 108 (539)
T TIGR02418 38 ELIVV-RHEQNAAFM--AQ--AVGRIT-GKPGVALVTSGPG-CSNLVTGLATANSEGDPVVAIGGQVKRADLLK-L-THQ 108 (539)
T ss_pred CEEEe-CcHHHHHHH--HH--HHHHHh-CCceEEEECCCCC-HhHHHHHHHHHhhcCCCEEEEeCCCccccccc-C-ccc
Confidence 67765 799987654 44 477532 233333 444432 22222222333334556666666555443433 2 388
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
.+....+++.+-. -.+...++.++...++.|++.. .++..|||+-++..
T Consensus 109 ~~d~~~~~~~~tk-~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 109 SMDNVALFRPITK-YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred ccchhhhhhccee-eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 8888888888754 3445567777877788777643 22323599988754
No 292
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=81.16 E-value=6.6 Score=51.92 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=28.0
Q ss_pred cEEEEEEcCC-ccCCcccHHHHHHHHHcCCCeEEEEEecCC
Q psy2375 221 RKIWILCGDG-EMDEPESISEISMAAREKLDNLIMIVNCNL 260 (929)
Q Consensus 221 ~~v~~~~GDG-e~~eg~~~eAl~~A~~~~L~nli~vvn~N~ 260 (929)
..||++-||| ..|-| +.++..|.+.+. |+++||=||.
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~-~v~~i~~dne 989 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGK-DVNVLVMDTE 989 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCC-CeEEEEECCc
Confidence 4799999999 55766 567888888885 5777776663
No 293
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=81.14 E-value=2 Score=46.87 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=29.6
Q ss_pred eeecCCCEEEEE-------EeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVRE-------IKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~-------i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|.||..|+|.+ +++++||.|+.||+|++|+.
T Consensus 199 ~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEA 237 (274)
T PLN02983 199 PLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEA 237 (274)
T ss_pred eEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEe
Confidence 489999999999 49999999999999999985
No 294
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=81.01 E-value=54 Score=43.35 Aligned_cols=215 Identities=15% Similarity=0.085 Sum_probs=115.0
Q ss_pred CceEeccccchhhHHHHHHHHH-------HHhccCCCceEEEEeeh-hhHHHhHHHHHHHhhhh---cCCcEEEEeecCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAAT-------SYSTSNCIMIPFFTFYS-MFGLQRIGDLAWLAGDI---RARGFLIGGTSGR 631 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~-------g~A~~G~~~iPf~~~ys-~F~~qR~~d~i~~~~~~---~~~~v~i~~t~~~ 631 (929)
+-+|+.|+||.-++.+ +.|+ |-+..| .|...|. -=|.-|++|-+..+... ..-+++++...+
T Consensus 82 ~i~fe~~~NEkvAae~--~~GsQ~~~~~~~a~~~G----v~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDD- 154 (1165)
T PRK09193 82 DIVFQPGLNEDLAATA--VWGSQQVNLFPGAKYDG----VFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDD- 154 (1165)
T ss_pred ceEEeeccCHHHHHHH--Hhhhcccccccceeecc----ceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecC-
Confidence 4789999999987765 3232 112233 1222233 23577999976533211 123444432221
Q ss_pred eeecCCCCCC--CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC-CC--------CCC-CC
Q psy2375 632 TTINGEGLQH--EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM-NE--------NYS-HP 699 (929)
Q Consensus 632 ~~~g~dG~tH--q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~-~e--------~~~-~p 699 (929)
=..| |.-+|--++...-+|=|+.|++..|+..+...|+.--.--+-+|.++.+.. .+ +.. .+
T Consensus 155 ------pg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~ 228 (1165)
T PRK09193 155 ------HAAKSSTLPHQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQI 228 (1165)
T ss_pred ------CCCccccchhhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccC
Confidence 1112 222222233333445599999999999999877642111233577776432 10 000 00
Q ss_pred CCCcccccccccce----E-----------------------------EEeccCCcCCCCcEEEEEeChhHHHHH-HHHH
Q psy2375 700 GLKKGQEKGIIKGL----Y-----------------------------LLKNHNNEKSKLKVQLIGSGAILREIL-ASKI 745 (929)
Q Consensus 700 ~~~~~~~~~i~~G~----y-----------------------------~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~ 745 (929)
..|.+. ....++ + .+..+ .+..++-||++|..-..+. |.+.
T Consensus 229 ~~~~~f--~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~---~~~~~iGIItsG~~y~~v~eal~~ 303 (1165)
T PRK09193 229 VLPEDF--EMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVID---SPNARLGIVAAGKAYLDVRQALRD 303 (1165)
T ss_pred CCcccc--cCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecC---CCCCCEEEEecCccHHHHHHHHHH
Confidence 111100 000110 0 00001 0135799999998887777 7665
Q ss_pred HhccCCCc--------eEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhh
Q psy2375 746 LLQEWDID--------SAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAF 817 (929)
Q Consensus 746 L~~~~GI~--------a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~ 817 (929)
| |++ ++|+-+-...||+.+.+ ..-+.+. .-|++|||-.--+=+||++.
T Consensus 304 l----g~~~~~~~~~gi~ilKvgm~~PL~~~~i-------------------~~Fa~g~-~~vlVVEE~~p~iE~qlk~~ 359 (1165)
T PRK09193 304 L----GLDEETAARLGIRLYKVGMVWPLEPQGV-------------------RAFAEGL-DEILVVEEKRQIIEYQLKEE 359 (1165)
T ss_pred c----CCChhhhcccCCCEEEeCCCCCCCHHHH-------------------HHHHhcC-CEEEEEecCchHHHHHHHHH
Confidence 5 665 78888877778876543 3444555 57888998755566788877
Q ss_pred cc
Q psy2375 818 IP 819 (929)
Q Consensus 818 l~ 819 (929)
+.
T Consensus 360 l~ 361 (1165)
T PRK09193 360 LY 361 (1165)
T ss_pred Hh
Confidence 65
No 295
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=80.93 E-value=3.2 Score=40.46 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=17.2
Q ss_pred eecCCCcccCCCeEEEEee
Q psy2375 909 KVKVGDKISKDSQILILEE 927 (929)
Q Consensus 909 ~~~~G~~V~~G~~L~~i~~ 927 (929)
++++||.|++||+|+.++.
T Consensus 85 ~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 85 HVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 7899999999999999874
No 296
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=80.87 E-value=3.1 Score=40.37 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=17.4
Q ss_pred eecCCCcccCCCeEEEEee
Q psy2375 909 KVKVGDKISKDSQILILEE 927 (929)
Q Consensus 909 ~~~~G~~V~~G~~L~~i~~ 927 (929)
++++||.|++||+|+.++.
T Consensus 85 ~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 85 HVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 7899999999999999874
No 297
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=80.80 E-value=2.3 Score=41.95 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCeEEEEEecceeeeeecCCCEEEEEE-----------------------------------eecCCCcccCCCeEEEEe
Q psy2375 882 DQSLLVVESEKVSMEIPSSHNGVVREI-----------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 882 Gd~l~~iEt~K~~~~I~Ap~~G~v~~i-----------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
|+.+++.=++ ..|.||++|+|..+ ++++||.|++||+|+.++
T Consensus 30 G~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 30 GDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp SEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred cCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 6777755443 36889999988887 788999999999999987
Q ss_pred e
Q psy2375 927 E 927 (929)
Q Consensus 927 ~ 927 (929)
.
T Consensus 107 ~ 107 (132)
T PF00358_consen 107 L 107 (132)
T ss_dssp H
T ss_pred H
Confidence 4
No 298
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=80.55 E-value=1.7 Score=51.60 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.1
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.-.+.||..|+|+.+.|++|+.|++||+|++++.
T Consensus 575 ~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 575 SGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CCceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 4468999999999999999999999999999874
No 299
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.50 E-value=1.9 Score=43.50 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCeEEEEEecceeeeeecCCCEEEEEE-----------------------------------eecCCCcccCCCeEEEEe
Q psy2375 882 DQSLLVVESEKVSMEIPSSHNGVVREI-----------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 882 Gd~l~~iEt~K~~~~I~Ap~~G~v~~i-----------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
||.+++.=+ +-+|.||++|+|..+ ++++||.|++||+|++++
T Consensus 33 GdGiAI~P~---~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 33 GDGVAIKPS---EGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred cCcEEEecC---CCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 666665433 357788888877766 899999999999999987
Q ss_pred ec
Q psy2375 927 EQ 928 (929)
Q Consensus 927 ~~ 928 (929)
.+
T Consensus 110 l~ 111 (156)
T COG2190 110 LD 111 (156)
T ss_pred HH
Confidence 43
No 300
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=79.89 E-value=1.8 Score=51.17 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=37.1
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEe
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~ 909 (929)
.|.-.+..|++||+|++||+|++.+ ......|.||.+|+|++|.
T Consensus 39 ~g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 39 IGAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 3455678899999999999999884 3368899999999999985
No 301
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=79.26 E-value=2.3 Score=46.05 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=29.9
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|+||.+|+|..+.+.+|+.|..|++|+.|.+
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 368999999999999999999999999998753
No 302
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=78.91 E-value=39 Score=34.57 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=70.5
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeee---
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTI--- 634 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~--- 634 (929)
..|.+++..+. .+.|+.-+++++|.+... +-.+++++.. .|.+. ..++ |.+..++.+-++++.-.+++..
T Consensus 39 ~~~~~~~~~~~--~g~mG~~~~~aiGa~~a~-~~~~vv~i~GDG~f~~~-~~el-~t~~~~~lp~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 39 NGKQRFILSGL--LATMGNGLPGAIAAKLAY-PDRQVIALSGDGGFAML-MGDL-ITAVKYNLPVIVVVFNNSDLGFIKW 113 (178)
T ss_pred CCCCcEEcCCC--CchhhhHHHHHHHHHHhC-CCCcEEEEEcchHHHhh-HHHH-HHHHHhCCCcEEEEEECCchhHHHH
Confidence 35677776543 466665556666766543 2345554444 56433 6664 7777788876666666654432
Q ss_pred ----cCC---CCCCCChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 635 ----NGE---GLQHEDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 635 ----g~d---G~tHq~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
.++ +... ..-|+ .++.+. |+..+...+..|++..++.+++. + .++++.+..
T Consensus 114 ~~~~~~~~~~~~~~-~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~---~-~p~liev~~ 172 (178)
T cd02014 114 EQEVMGQPEFGVDL-PNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAA---D-GPVVIDVVT 172 (178)
T ss_pred HHHHhcCCceeccC-CCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhC---C-CCEEEEEEe
Confidence 011 1111 11233 344444 77778888999999999999876 2 236666543
No 303
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=78.51 E-value=2.6 Score=42.62 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=30.2
Q ss_pred eeeecCCCEEEEE-------EeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVRE-------IKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~-------i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|+||..|++.. .++++|+.|+.||+|+.|+.
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEa 119 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEA 119 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEe
Confidence 5799999999987 68999999999999999985
No 304
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=78.34 E-value=2.5 Score=51.70 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=31.3
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||..|+|.++.+++||.|++||+|++++.
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 469999999999999999999999999999985
No 305
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=76.55 E-value=2.8 Score=51.27 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=31.5
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3479999999999999999999999999999875
No 306
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=75.75 E-value=2.8 Score=48.01 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=31.6
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
.+.|.+..+|.|.++.++..+.|+.|++|++|++.
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence 44788999999999999999999999999999864
No 307
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=75.62 E-value=6.6 Score=43.58 Aligned_cols=42 Identities=33% Similarity=0.410 Sum_probs=34.8
Q ss_pred EEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 885 LLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 885 l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+.++. .....|.++..|.|.++.+++||.|..||+|+.++.
T Consensus 58 ~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 58 PGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 344554 334478888999999999999999999999999875
No 308
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=75.39 E-value=4.4 Score=50.52 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=35.8
Q ss_pred cceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEe
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~ 909 (929)
|...+..|++||+|.+||+|++-+ .-+...|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 555678899999999999999653 2257899999999999985
No 309
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=75.25 E-value=16 Score=44.69 Aligned_cols=119 Identities=8% Similarity=0.020 Sum_probs=65.4
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|++++.+ |.| ||... +...+++ ++.+ |..-+.--+..+-..+.|-+.|.|..+....+.+ .||
T Consensus 41 ~~i~~-rhE~~A~~~--Adg--yar~t-g~~gv~~~t~GP-G~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~--~~Q 111 (579)
T TIGR03457 41 RFIPV-VHEQGAGHM--ADG--FARVT-GRMSMVIGQNGP-GVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLG--GFQ 111 (579)
T ss_pred eEEEe-ccHHHHHHH--HHH--HHHHh-CCCEEEEECCCc-hHHHHHHHHHHHhhcCCCEEEEeCCCccccCCCC--CCc
Confidence 66765 889987654 544 76432 2444443 3333 2222221123333335565555544443333332 377
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
......+++.+=. -.+...++.++..+++.|++....+..|||+-++..
T Consensus 112 ~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 160 (579)
T TIGR03457 112 EADQLPMFQEFTK-YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRD 160 (579)
T ss_pred ccchhhhhhccee-EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 7776777877644 345556777888888877765333324699988754
No 310
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=75.19 E-value=3.3 Score=50.70 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=31.6
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~iea 555 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEA 555 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999875
No 311
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=74.20 E-value=2.9 Score=49.48 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=38.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~ 909 (929)
+-|.-....|++||+|.+||+|..=+. -...+.||.+|+|.+|.
T Consensus 40 h~g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 40 HIGAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred ccCCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 334446889999999999999987765 88899999999999997
No 312
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=74.14 E-value=3.4 Score=48.41 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.9
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
..|+||.+|+|..+.+.+|+.|.+|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 57999999999999999999999999999884
No 313
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=73.89 E-value=34 Score=34.33 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=34.8
Q ss_pred cccHHHHH-HHHHcCCCeEEEEEecCCCc--ccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 235 PESISEIS-MAAREKLDNLIMIVNCNLQR--LDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 235 g~~~eAl~-~A~~~~L~nli~vvn~N~~~--idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
...++.|. .++..+++ ++++...-+.. -+|++. ...+....|+.. |+.|+.
T Consensus 75 ~ra~dqi~~~~a~~~~p-v~~~~~~~g~~~~~~G~tH----~~~~~~a~~~~iPg~~v~~ 129 (156)
T cd07033 75 QRAYDQIRHDVALQNLP-VKFVGTHAGISVGEDGPTH----QGIEDIALLRAIPNMTVLR 129 (156)
T ss_pred HHHHHHHHHHHhccCCC-eEEEEECCcEecCCCCccc----chHHHHHHhcCCCCCEEEe
Confidence 46778877 88899986 77777765544 366654 234556778876 777655
No 314
>PRK08617 acetolactate synthase; Reviewed
Probab=73.61 E-value=25 Score=42.78 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=66.8
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ ..|+++..+ |.| ||... +...++ .++.+ |..-+.-=+..+-..+.|-++|.|..++...+. ..|
T Consensus 43 i~~i~~-~hE~~A~~~--A~g--yar~t-g~~gv~~vt~Gp-G~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~ 113 (552)
T PRK08617 43 PELIVT-RHEQNAAFM--AAA--IGRLT-GKPGVVLVTSGP-GVSNLATGLVTATAEGDPVVAIGGQVKRADRLK--RTH 113 (552)
T ss_pred CCEEEe-ccHHHHHHH--HHh--Hhhhc-CCCEEEEECCCC-cHhHhHHHHHHHhhcCCCEEEEecCCcccccCC--CCc
Confidence 467765 899987654 554 66543 233343 33333 222222112333333455555555444333332 247
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
|.+....+++.+-. ..+...++.++..+++.|++.... +..|||+-++..
T Consensus 114 q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 114 QSMDNVALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred cccchhhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 88877788888754 455556777888888888875433 223699988754
No 315
>PRK08322 acetolactate synthase; Reviewed
Probab=73.55 E-value=24 Score=42.78 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=64.5
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ ..|++++.+ |.| ||..- +...+++ +..+ |..-+.--+-.+-..+.|-++|.|.......+.+ .||
T Consensus 40 ~~i~~-~hE~~A~~~--A~g--yar~t-g~~gv~~~t~Gp-G~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~--~~q 110 (547)
T PRK08322 40 KLILT-RHEQGAAFM--AAT--YGRLT-GKAGVCLSTLGP-GATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQG--SFQ 110 (547)
T ss_pred cEEEe-ccHHHHHHH--HHH--HHHhh-CCCEEEEECCCc-cHhHHHHHHHHHhhcCCCEEEEeccccccccCCC--ccc
Confidence 66665 899997654 544 66543 2333443 3332 2222221122222334555555444432223322 366
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
.+....+++.+-. ..+...++.++..+++.|++.... +..|||+-++..
T Consensus 111 ~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 111 IVDVVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred cccHHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 6666778877653 456677788888888888765333 223599888753
No 316
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=72.39 E-value=18 Score=44.43 Aligned_cols=120 Identities=9% Similarity=0.007 Sum_probs=64.9
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++.+ -.|+++..+ |. |||... +...++ .++.+ |+.-+.-=+..+-..+.|-++|.|....-..+.+ .+
T Consensus 44 i~~i~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GP-G~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~--~~ 114 (588)
T PRK07525 44 IRFIDV-AHEQNAGHM--AD--GYTRVT-GRMGMVIGQNGP-GITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQG--GF 114 (588)
T ss_pred CCEEEe-cCHHHHHHH--HH--HHHHHh-CCCEEEEEcCCc-cHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCCC--CC
Confidence 367765 899997654 54 477542 234444 33333 2221211122222335555555444432223322 36
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
|......+++.+=. -.+...++.++...++.|++....+..|||+-++..
T Consensus 115 q~~d~~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 115 QEAEQMPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred cccchhhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 66666677776533 455667788888888888765333334699988754
No 317
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=72.13 E-value=46 Score=36.78 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=48.4
Q ss_pred EEEEEEcCCc--cCCcccHHHHHHHHHcCCCeEEEEEecC--CCccccc---ccccccchHHHHHHHhhCCceEEEEe
Q psy2375 222 KIWILCGDGE--MDEPESISEISMAAREKLDNLIMIVNCN--LQRLDGP---VRGNSKIIQELEAHFYGVGWNVIKVI 292 (929)
Q Consensus 222 ~v~~~~GDGe--~~eg~~~eAl~~A~~~~L~nli~vvn~N--~~~idg~---v~~~~~~~~~l~~~f~~~Gw~vi~v~ 292 (929)
+++.++.||+ .+++....++..|...+.-=++++||++ ..+|-.. ........ .+..+|..|++...-|+
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~-~l~~Yl~~fpfpYy~~~ 242 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSG-VITPYLDEFPFPYYVIV 242 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCcc-HHHHHHhcCCCCeEEEe
Confidence 8999999999 8899998888999998986344444443 4555422 11111111 78899999998876664
No 318
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=71.40 E-value=4.4 Score=35.97 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=23.6
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecc
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEK 892 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K 892 (929)
++.+.-....++.||.|++||+|+.|=+..
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 899999999999999999999999997643
No 319
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=71.29 E-value=36 Score=34.87 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=38.6
Q ss_pred cEEEEEEcCCccCCcccHHHH-HHHHHcCC-------CeEEEEEecCCCcccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEI-SMAAREKL-------DNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl-~~A~~~~L-------~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
.++|+.+.=+.+-. ..++-+ +.++..+. .|++++...=+..-+|++ ..++....++.. |+.|+.-
T Consensus 68 ~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t-----hs~~~~a~lr~iPg~~V~~P 141 (167)
T cd07036 68 LRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ-----HSQSLEAWFAHIPGLKVVAP 141 (167)
T ss_pred CEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh-----hhhhHHHHHhcCCCCEEEee
Confidence 35666544444433 577776 44555531 358888865444334443 235567889987 8988764
No 320
>KOG1145|consensus
Probab=71.10 E-value=34 Score=41.17 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=78.5
Q ss_pred HhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE
Q psy2375 210 LHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI 289 (929)
Q Consensus 210 l~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi 289 (929)
|.+|| .+..|=.|.++-+|-... +.+.|||.+|-..+.+ +|+-||- ||.| +..++.....+...|..+-
T Consensus 217 MRaRG-A~vtDIvVLVVAadDGVm-pQT~EaIkhAk~A~Vp-iVvAinK----iDkp----~a~pekv~~eL~~~gi~~E 285 (683)
T KOG1145|consen 217 MRARG-ANVTDIVVLVVAADDGVM-PQTLEAIKHAKSANVP-IVVAINK----IDKP----GANPEKVKRELLSQGIVVE 285 (683)
T ss_pred HHhcc-CccccEEEEEEEccCCcc-HhHHHHHHHHHhcCCC-EEEEEec----cCCC----CCCHHHHHHHHHHcCccHH
Confidence 67886 366777788887776655 5899999999999876 6666653 6666 2346666666677776543
Q ss_pred EEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHH
Q psy2375 290 KVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIY 369 (929)
Q Consensus 290 ~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~ 369 (929)
. || |+-|-. +|.+| -|.++..|.
T Consensus 286 ~--~G------------------------GdVQvi-----------------------------piSAl--~g~nl~~L~ 308 (683)
T KOG1145|consen 286 D--LG------------------------GDVQVI-----------------------------PISAL--TGENLDLLE 308 (683)
T ss_pred H--cC------------------------CceeEE-----------------------------Eeecc--cCCChHHHH
Confidence 3 33 333332 23334 577888887
Q ss_pred HHHHH---HHh---CCCCC---eEEEEeeecccCCc
Q psy2375 370 SAFKM---AQK---NKDKP---TVLLIKSIKGYGLG 396 (929)
Q Consensus 370 ~a~~~---a~~---~~~~P---~vI~~~T~KG~G~~ 396 (929)
+|+-. .++ ...+| .||...|.||.|--
T Consensus 309 eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 309 EAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred HHHHHHHHHhhcccCCCCCceEEEEEeeecCCccce
Confidence 77643 222 23455 49999999999953
No 321
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=71.10 E-value=1.5e+02 Score=39.36 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred CcEEEEEeChhHHHHH-HHHHHhccCCCc--------eEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccC
Q psy2375 726 LKVQLIGSGAILREIL-ASKILLQEWDID--------SAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKS 796 (929)
Q Consensus 726 ~dv~Lia~G~~v~~al-AAe~L~~~~GI~--------a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~ 796 (929)
.++-||++|..-..+. |.+.| |++ ++|+-+-...||+.+.+ .+-+.+.
T Consensus 286 ~~~GIItsG~~y~~v~eAl~~l----gl~~~~~~~~gi~ilKvgm~~PL~~~~i-------------------~~Fa~g~ 342 (1186)
T PRK13029 286 PRLGIIAAGKAYLDVRQALRDL----GLDDATCAALGIRLLKVGCVWPLDPQSV-------------------REFAQGL 342 (1186)
T ss_pred CCEEEEecCccHHHHHHHHHHc----CCChhhccccCCCEEEeCCCCCCCHHHH-------------------HHHHhcC
Confidence 5799999998887777 76655 554 78888888788876543 3444555
Q ss_pred CCcEEEEecccchhHHHHHhhcc
Q psy2375 797 IGPIIVATDYMRLFAEQVRAFIP 819 (929)
Q Consensus 797 ~~~vVtved~~~~~~~~i~~~l~ 819 (929)
.-|++|||-..-+=+||++.+.
T Consensus 343 -d~vlVVEE~~p~iE~qlk~~l~ 364 (1186)
T PRK13029 343 -EEVLVVEEKRAVIEYQLKEELY 364 (1186)
T ss_pred -CEEEEEecCchHHHHHHHHHHh
Confidence 5789999875556678887764
No 322
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=70.34 E-value=49 Score=33.64 Aligned_cols=118 Identities=11% Similarity=0.026 Sum_probs=62.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|+++..+ |-| ||..- +...++ .+..+ |..-+.-=+-.+-..+.|-++|.|....-..+ . ..||
T Consensus 40 ~~v~~-rhE~~A~~m--A~g--yar~t-g~~~v~~~t~Gp-G~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q 110 (164)
T cd07039 40 EFIQV-RHEEAAAFA--ASA--EAKLT-GKLGVCLGSSGP-GAIHLLNGLYDAKRDRAPVLAIAGQVPTDELG-T-DYFQ 110 (164)
T ss_pred eEEEe-CCHHHHHHH--HHH--HHHHh-CCCEEEEECCCC-cHHHHHHHHHHHHhcCCCEEEEecCCcccccC-C-CCCc
Confidence 66654 889986654 444 66542 133333 23332 11111111122222345544444433322222 2 2478
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
...+..+++.+-. -.+.+.++.++...++.|++....+..||||-++.
T Consensus 111 ~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 111 EVDLLALFKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred ccCHHHHHHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 7777788887764 45566677888888888886544333458887654
No 323
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=69.49 E-value=30 Score=42.36 Aligned_cols=120 Identities=9% Similarity=-0.036 Sum_probs=63.6
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ ..|++++.+ |. |||... +..-+++ +..+-. .-+.-=+..+-..+.|-+.|.|.......+ -..+
T Consensus 50 i~~v~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GpG~-~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~ 120 (578)
T PRK06112 50 IRQIAY-RTENAGGAM--AD--GYARVS-GKVAVVTAQNGPAA-TLLVAPLAEALKASVPIVALVQDVNRDQTD--RNAF 120 (578)
T ss_pred CcEEEe-ccHHHHHHH--HH--HHHHHh-CCCEEEEeCCCCcH-HHHHHHHHHHhhcCCCEEEEecCCccccCC--CCCc
Confidence 366665 799986654 44 577542 1333333 322332 112111223333455655555544432222 2236
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
|.+....+++.+-. ..+...++.++...++.|++.. .++..|||+-++..
T Consensus 121 Q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 121 QELDHIALFQSCTK-WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred cccChhhhhccccc-eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 77777778887754 3445566777777787777642 23334599888754
No 324
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=69.07 E-value=35 Score=41.31 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=64.3
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED 643 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~ 643 (929)
+++.+ -.|++++.+ |. |||... +..-+++..+-.|..-+.-=+-.+-.-+.|-++|.|.......+ .+..+|.
T Consensus 50 ~~i~~-~hE~~A~~~--Ad--gyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~-~~~~~~~ 122 (530)
T PRK07092 50 RYVLG-LQEAVVVGM--AD--GYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILP-FEPFLAA 122 (530)
T ss_pred CEEEE-ccHHHHHHH--HH--HHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccC-ccchhcc
Confidence 66654 899987654 44 577643 24445555554554333222222323345545554443322222 3332333
Q ss_pred hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 644 GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 644 ~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
.....+++.+-.... ...++.++...++.|++.. .++..|||+-++..
T Consensus 123 ~d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 123 VQAAELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred cCHHHhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 444577777765433 3366778777888777643 22223599888743
No 325
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.54 E-value=5.5 Score=46.10 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=28.6
Q ss_pred eeeeecCCCEEEEEEee-cCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKV-KVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~-~~G~~V~~G~~L~~i~~ 927 (929)
...|+||++|+|..+.+ .+|+.|.+|++|+.|.+
T Consensus 271 ~~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~ 305 (423)
T TIGR01843 271 RLIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVP 305 (423)
T ss_pred hcEEECCCCcEEEEEEEEccCceecCCCeeEEEec
Confidence 56799999999988875 68999999999998753
No 326
>PRK05858 hypothetical protein; Provisional
Probab=67.49 E-value=33 Score=41.65 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=65.5
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++.+ -.|+++..+ |. |||... +..-++ .++.+ |+.-+.--+..+-..+.|-+.|.|+......+ . .++
T Consensus 43 i~~i~~-rhE~~A~~~--Ad--Gyar~t-g~~gv~~~t~Gp-G~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~ 113 (542)
T PRK05858 43 IRLIDV-RHEQTAAFA--AE--AWAKLT-RVPGVAVLTAGP-GVTNGMSAMAAAQFNQSPLVVLGGRAPALRWG-M-GSL 113 (542)
T ss_pred CCEEee-ccHHHHHHH--HH--HHHHhc-CCCeEEEEcCCc-hHHHHHHHHHHHHhcCCCEEEEeCCCCcccCC-C-CCC
Confidence 477765 899997655 44 477653 122232 23222 22222222333333455545444433322222 2 236
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
|.+....+++.+-. -.+...++.++...++.|++.... +..|||+.++..
T Consensus 114 q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 114 QEIDHVPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred cccchhhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 77766778877754 455666788888888888765432 334699988753
No 327
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=67.49 E-value=12 Score=41.87 Aligned_cols=45 Identities=27% Similarity=0.230 Sum_probs=36.7
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe--cceeeeeecCCCEEEEEE
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES--EKVSMEIPSSHNGVVREI 908 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt--~K~~~~I~Ap~~G~v~~i 908 (929)
..+-+.+..++.|+.|++||+|++|-. .....++.||.+|+|..+
T Consensus 237 p~~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 237 IHGGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CCCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 456688899999999999999999853 123567899999999776
No 328
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=67.47 E-value=5.8 Score=44.80 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=32.7
Q ss_pred eeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecC
Q psy2375 870 TVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912 (929)
Q Consensus 870 ~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~ 912 (929)
...|++||.|++||+|++-- -.--+-+.||.+|+|..|.-.+
T Consensus 42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeeccc
Confidence 45689999999999998632 1145679999999999987443
No 329
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=67.43 E-value=5.9 Score=52.57 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.9
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.+++||.|++||+|++|+.
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEs 1165 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEA 1165 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 459999999999999999999999999999875
No 330
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=67.39 E-value=5.1 Score=45.92 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=30.9
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|+||.+|+|.+..+.+|+.|.+|++|+.+-+
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 4579999999999999999999999999998754
No 331
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.96 E-value=41 Score=41.32 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=63.4
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++.+ -.|++++.+ |. |||... +...++ .++.+ |..-+.-=+..+-..+.|-++|.|.......+.++ +
T Consensus 60 i~~i~~-rhE~~A~~~--Ad--gYar~t-g~~gv~~~t~Gp-G~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~ 130 (587)
T PRK06965 60 IQHVLV-RHEQAAVHA--AD--GYARAT-GKVGVALVTSGP-GVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDA--F 130 (587)
T ss_pred CeEEEe-CCHHHHHHH--HH--HHHHHh-CCCeEEEECCCc-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCC--c
Confidence 367765 899987654 44 577653 233343 33333 22222222333333456655555544433344333 5
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
|.+....+++.+=. -.+...++.++..+++.|++.... +..|||+-++..
T Consensus 131 q~~d~~~l~~~itk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 131 QECDTVGITRPIVK-HNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred ccccHHHHhcCCcc-eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 55655667776643 233445566666667767654322 234699988764
No 332
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=66.86 E-value=52 Score=33.30 Aligned_cols=119 Identities=15% Similarity=-0.015 Sum_probs=58.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC-
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE- 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq- 642 (929)
|++.+ -.|+++..+ |.| |+... ...++..-+-=|+.-+..-+..+-..+.|-++|.|....-..+....+|+
T Consensus 37 ~~i~~-rhE~~A~~m--A~g--yar~t--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~ 109 (162)
T cd07038 37 RWVGN-CNELNAGYA--ADG--YARVK--GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHT 109 (162)
T ss_pred eEEee-CCHHHHHHH--HHH--HHHhh--CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeec
Confidence 56654 889986654 555 55543 12333332211222222222333233455455544433222333333442
Q ss_pred ----Chh-hHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 643 ----DGH-SHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 643 ----~~e-d~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
... +..+++.+=.. .+...++.++..+++.|++.+.....|||+-++
T Consensus 110 ~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 110 LGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 233 35677665442 333457778888888888664433346888665
No 333
>PRK07586 hypothetical protein; Validated
Probab=66.47 E-value=49 Score=39.80 Aligned_cols=119 Identities=13% Similarity=-0.035 Sum_probs=62.9
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|++++.+ |.| ||..- +..-++ .++.+ |..-+.--+..+-..+.|-++|.|.......+.+. ||
T Consensus 41 ~~i~~-rhE~~A~~m--Adg--yar~t-g~~gv~~~t~GP-G~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q 111 (514)
T PRK07586 41 RCVLG-LFEGVATGA--ADG--YARMA-GKPAATLLHLGP-GLANGLANLHNARRARTPIVNIVGDHATYHRKYDA--PL 111 (514)
T ss_pred eEEEe-ccHHHHHHH--HHH--HHHHH-CCCEEEEecccH-HHHHHHHHHHHHHhcCCCEEEEecCCchhccCCCc--cc
Confidence 67765 899987655 554 77542 233333 33333 22222211223333455555554444433233333 44
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
......+++.+= .-.+...++.++...++.|++.... +..||||-++..
T Consensus 112 ~~d~~~~~~~vt-k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 112 TSDIEALARPVS-GWVRRSESAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ccchhhhhcccc-ceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 455556676652 2355667777777778777765332 234599988754
No 334
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=66.21 E-value=1.2e+02 Score=31.72 Aligned_cols=120 Identities=10% Similarity=-0.025 Sum_probs=71.1
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeee---
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTI--- 634 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~--- 634 (929)
..|++++..+ -.++|+.-+++++|.+... +-.|++.+.. .|.+ -..+ +|.+..++.+.++++.-.+++..
T Consensus 36 ~~~~~~~~~~--~~gsmG~~lpaAiGa~la~-p~~~vv~i~GDGsf~m-~~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 110 (205)
T cd02003 36 RTPGGYHLEY--GYSCMGYEIAAGLGAKLAK-PDREVYVLVGDGSYLM-LHSE-IVTAVQEGLKIIIVLFDNHGFGCINN 110 (205)
T ss_pred CCCCcEEcCC--CcchhhhHHHHHHHHHHhC-CCCeEEEEEccchhhc-cHHH-HHHHHHcCCCCEEEEEECCccHHHHH
Confidence 3578888653 3677877677787776553 3456665544 5532 2334 47777778876677666664431
Q ss_pred -----cCC--CCC--------------CCChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 635 -----NGE--GLQ--------------HEDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 635 -----g~d--G~t--------------Hq~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
+.. +.. .+. .|+ .++++. ++..+.-.+..|+..+++.+++. ++| +++.+.
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~---~gp-~lIeV~ 182 (205)
T cd02003 111 LQESTGSGSFGTEFRDRDQESGQLDGALLP-VDFAANARSL-GARVEKVKTIEELKAALAKAKAS---DRT-TVIVIK 182 (205)
T ss_pred HHHHhcCccccchhcccccccccccCCCCC-CCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHhC---CCC-EEEEEE
Confidence 100 100 111 233 344444 66777778999999999999876 333 555443
No 335
>PRK12999 pyruvate carboxylase; Reviewed
Probab=65.95 E-value=6.4 Score=51.99 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.5
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+|.||.+|+|.++.+++||.|+.||+|+.++.
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 3569999999999999999999999999999974
No 336
>PRK12474 hypothetical protein; Provisional
Probab=64.97 E-value=66 Score=38.79 Aligned_cols=119 Identities=10% Similarity=-0.066 Sum_probs=64.4
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|+++..+ |. |||..- +..-++ .++.+ |..-+.--+..+-.-+.|-+.|.|.......+.++ ||
T Consensus 45 ~~i~~-rhE~~A~~m--Ad--gYaR~t-g~~gv~~~t~Gp-G~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~--~q 115 (518)
T PRK12474 45 RPVLC-LFEGVVTGA--AD--GYGRIA-GKPAVTLLHLGP-GLANGLANLHNARRAASPIVNIVGDHAVEHLQYDA--PL 115 (518)
T ss_pred eEEEe-cchHHHHHH--HH--HHHHHh-CCCEEEEEccch-hHhHhHHHHHHHhhcCCCEEEEeccCchhhcCCCC--cc
Confidence 67765 899987654 54 477542 233343 34333 22222211222223345655555544432233222 44
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhh-ccCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHC-MISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~-~~g~~~~v~~rl~~~ 692 (929)
......+++.+-. ..+...++.++..+++.|++. +.++..|||+-++..
T Consensus 116 ~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 116 TSDIDGFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred ccCHHHhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 4555567776542 345678888888888888863 233434699988754
No 337
>KOG0369|consensus
Probab=64.20 E-value=5.3 Score=48.28 Aligned_cols=34 Identities=35% Similarity=0.459 Sum_probs=30.8
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|-||.+|+|.+|.+++|+.|++||+|++++.
T Consensus 1106 ~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1106 KGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSA 1139 (1176)
T ss_pred cccccCCCCCceEEEEEecCceecCCCceEeeec
Confidence 4568899999999999999999999999998763
No 338
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=62.95 E-value=80 Score=38.84 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|++++.+ |- |||....+..-++ .++.+ |..-+.--+..+-..+.|-++|.|.......+.+ .+|
T Consensus 43 ~~V~~-rhE~~A~~m--Ad--gyaR~t~g~~gv~~~t~Gp-G~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~--~~q 114 (588)
T TIGR01504 43 RHILA-RHVEGASHM--AE--GYTRATAGNIGVCIGTSGP-AGTDMITGLYSASADSIPILCITGQAPRARLHKE--DFQ 114 (588)
T ss_pred cEEee-CCHHHHHHH--HH--HHHHhcCCCeEEEEECCCc-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--ccc
Confidence 66654 789987654 44 5776410133333 33333 2222221123333345565555554443323322 266
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
.+....+++.+=. -.+...++.++..+++.|++.. .++..|||+-++..
T Consensus 115 ~~D~~~~~~~vtk-~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 115 AVDIAAIAKPVSK-MAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred ccCHHHHhhhhce-EEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 6666677777653 3444557788888888888743 22333599988764
No 339
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=62.92 E-value=55 Score=33.14 Aligned_cols=113 Identities=12% Similarity=-0.086 Sum_probs=61.7
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHH-hHHHHHHHhhhhcCCcEEEEeecCCeeecC--
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQ-RIGDLAWLAGDIRARGFLIGGTSGRTTING-- 636 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~q-R~~d~i~~~~~~~~~~v~i~~t~~~~~~g~-- 636 (929)
..|++++..|.- +.|+.-+.+++|.+... +-.|++++..-=+|+ -..+ ++.++.++.+.++++.-.++.....
T Consensus 36 ~~p~~~~~~~~~--g~mG~~lp~AiGa~la~-~~~~vv~i~GDG~f~~~~~e-l~ta~~~~lpv~ivv~NN~~~~~~~~~ 111 (172)
T cd02004 36 RKPRHRLDAGTF--GTLGVGLGYAIAAALAR-PDKRVVLVEGDGAFGFSGME-LETAVRYNLPIVVVVGNNGGWYQGLDG 111 (172)
T ss_pred cCCCcEecCCCC--CcccchHHHHHHHHHhC-CCCeEEEEEcchhhcCCHHH-HHHHHHcCCCEEEEEEECcccccchhh
Confidence 356788876532 44555456666666554 345666555522223 2333 4677778887666665555432211
Q ss_pred -C----CCCC----CChhhHH-HHhcCCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 637 -E----GLQH----EDGHSHV-LASTIPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 637 -d----G~tH----q~~ed~~-l~r~iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
. +..+ ....|+. ++++. ++..+.-.+..|+..+++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~ 161 (172)
T cd02004 112 QQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALAS 161 (172)
T ss_pred hhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHc
Confidence 0 0000 0122332 33333 55556666899999999998875
No 340
>KOG1185|consensus
Probab=62.48 E-value=31 Score=40.81 Aligned_cols=163 Identities=20% Similarity=0.195 Sum_probs=85.6
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
=||+.+ =+||.++-+ |.+.||= .| ..-++..-|-=|...+..-+.++--...|-++|+|+++ +.+-+-|. -|
T Consensus 52 Ik~I~~-RnEqaA~yA--A~A~gyL-t~--kpGV~lVvsGPGl~hal~gv~NA~~n~wPll~IgGsa~-~~~~~rGa-fQ 123 (571)
T KOG1185|consen 52 IKFIGT-RNEQAAVYA--ASAYGYL-TG--KPGVLLVVSGPGLTHALAGVANAQMNCWPLLLIGGSAS-TLLENRGA-FQ 123 (571)
T ss_pred CeEeec-ccHHHHHHH--HHHhhhh-cC--CCeEEEEecCChHHHHHHHhhhhhhccCcEEEEecccc-hhhhcccc-cc
Confidence 478877 789986644 6666663 44 33344443422222222112222112334455555544 33333333 45
Q ss_pred ChhhHHHHhcCCCc-EEEccCCHHHHHHHHHHHHh-hccCCCceEEEEEecC---------CCCC---CCCCCC-----c
Q psy2375 643 DGHSHVLASTIPNC-IPYDPTFAHEVAIIIHHGLH-CMISNQEDVFYYITVM---------NENY---SHPGLK-----K 703 (929)
Q Consensus 643 ~~ed~~l~r~iPnl-~v~~Pada~E~~~~l~~al~-~~~g~~~~v~~rl~~~---------~e~~---~~p~~~-----~ 703 (929)
...++.++|.. | -+..|....++--+++.|++ .|+|-..++|+-++.. .+.+ +.|.+| .
T Consensus 124 e~dQvel~rp~--~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~ 201 (571)
T KOG1185|consen 124 ELDQVELFRPL--CKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPPIPG 201 (571)
T ss_pred cccHHhhhhhh--hhhccCCCChhhccHHHHHHHHHHhcCCCCceEEecccceeeeecccccccccCCCCCCCCCCCCCC
Confidence 67777777643 4 34578888888888888875 4556334477655432 1111 122221 1
Q ss_pred ccccccccceEEEeccCCcCCCCcEEEEEeChhHHHH
Q psy2375 704 GQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREI 740 (929)
Q Consensus 704 ~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~a 740 (929)
.....|.+-.++|+..+ .-+.|++.|+....+
T Consensus 202 p~~s~i~~av~llk~AK-----rPLlvvGkgAa~~~a 233 (571)
T KOG1185|consen 202 PPPSQIQKAVQLLKSAK-----RPLLVVGKGAAYAPA 233 (571)
T ss_pred CCHHHHHHHHHHHHhcC-----CcEEEEecccccCcc
Confidence 12234555556666653 359999999877553
No 341
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=62.46 E-value=1.3e+02 Score=29.63 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=61.6
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeee---
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTI--- 634 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~--- 634 (929)
..|.+++..+. .++|+.-+++++|.+... +-++++++.. .|.+. ..++ +.+..++.+.++++.-.+++..
T Consensus 16 ~~p~~~~~~~~--~g~mG~~~~~aiGa~~a~-p~~~vv~i~GDG~f~~~-~~el-~ta~~~~~~v~~vv~nN~~~~~~~~ 90 (153)
T PF02775_consen 16 RRPRRFLTSGG--FGSMGYALPAAIGAALAR-PDRPVVAITGDGSFLMS-LQEL-ATAVRYGLPVVIVVLNNGGYGMTGG 90 (153)
T ss_dssp SSTTEEEESTT--TT-TTTHHHHHHHHHHHS-TTSEEEEEEEHHHHHHH-GGGH-HHHHHTTSSEEEEEEESSBSHHHHH
T ss_pred CCCCeEEcCCC--ccccCCHHHhhhHHHhhc-CcceeEEecCCcceeec-cchh-HHHhhccceEEEEEEeCCcceEecc
Confidence 35788887332 234443445556666543 3456555554 56444 5553 6677777777777776664432
Q ss_pred ----cCC-------CCCCCChhhHHHHhcCCCcEEEc--cCCHHHHHHHHHHHHhh
Q psy2375 635 ----NGE-------GLQHEDGHSHVLASTIPNCIPYD--PTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 635 ----g~d-------G~tHq~~ed~~l~r~iPnl~v~~--Pada~E~~~~l~~al~~ 677 (929)
... +.+.....-..++++. ++..+. +.+..|+...++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~ 145 (153)
T PF02775_consen 91 QQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALES 145 (153)
T ss_dssp HHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHS
T ss_pred ccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhC
Confidence 111 1112222222344444 444444 55669999999999966
No 342
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=62.33 E-value=44 Score=41.32 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=64.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|++++.+ |. |||... +...+++ +..+ |..-+.--+..+-.-+.|-+.|.|...+...+.+. +|
T Consensus 62 ~~i~~-rhE~~Aa~a--A~--gyar~t-gk~gv~~~t~GP-G~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~--~Q 132 (616)
T PRK07418 62 KHILV-RHEQGAAHA--AD--GYARAT-GKVGVCFGTSGP-GATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDA--FQ 132 (616)
T ss_pred eEEEe-ccHHHHHHH--HH--HHHHHh-CCCeEEEECCCc-cHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCC--cc
Confidence 77776 889986654 54 477543 2444443 3332 22222222333333455656665655544444444 44
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEec
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITV 691 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~ 691 (929)
......+++.+- .-.+...++.++..+++.|++.... +..|||+.++.
T Consensus 133 e~d~~~~~~~vt-k~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 133 ETDIFGITLPIV-KHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred cccHHHHhhhcc-eeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 444456666543 2234567778888888888875432 22458988875
No 343
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=62.02 E-value=5.5 Score=49.23 Aligned_cols=32 Identities=41% Similarity=0.619 Sum_probs=29.9
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.|-||.+|+|.++.|++|+.|++||+|++++.
T Consensus 1081 higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred ccCCCCCCceEEEEEccCCeecCCCeeeehhh
Confidence 48999999999999999999999999999863
No 344
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=61.78 E-value=20 Score=39.63 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=48.4
Q ss_pred cccceeeeeeecCCeecCCCeE--EEEEe--cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSL--LVVES--EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l--~~iEt--~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+-+....++.||.|++||+| ..+-. .-...+|.||.+|+| +.....-.|..|+.|+.+..
T Consensus 226 ~~~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 226 PAGGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp SSSEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred CccEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence 4456778889999999999999 54432 233568999999998 45568889999999998753
No 345
>PRK08266 hypothetical protein; Provisional
Probab=61.65 E-value=52 Score=39.86 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=62.0
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC-
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ- 640 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t- 640 (929)
=|++.+ ..|++++.+ |. |||... +...++ .++.+ |+.-+.--+..+-..+.|-++|.|.......+.+..+
T Consensus 44 i~~v~~-~hE~~A~~~--A~--gyar~t-g~~~v~~~t~Gp-G~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~ 116 (542)
T PRK08266 44 IRVIHT-RHEQAAGYM--AF--GYARST-GRPGVCSVVPGP-GVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHL 116 (542)
T ss_pred CeEEee-ccHHHHHHH--HH--HHHHHh-CCCeEEEECCCC-cHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcc
Confidence 367765 899987654 44 577543 233333 34443 2222222223333344554445443333233333233
Q ss_pred CCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 641 HEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 641 Hq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|+......+++.+-. ..+...++.++..+++.|++... ++..||||-++..
T Consensus 117 ~~~~d~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 117 HEMPDQLATLRSFTK-WAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred eecccHhhHHhhhcc-eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 443466678887644 34444555666667766665322 2223599988753
No 346
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=59.95 E-value=1.4e+02 Score=30.68 Aligned_cols=122 Identities=10% Similarity=-0.039 Sum_probs=70.1
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC-
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING- 636 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~- 636 (929)
..|++++..+ =.++|+.-+++++|.+..- +-.|++.+.. .|. +-..+ +|.+..++.+-++++.-.+++..-.
T Consensus 36 ~~~~~~~~~~--~~g~mG~~lp~aiGa~la~-~~~~vv~i~GDG~f~-m~~~e-L~ta~~~~l~vi~vV~NN~~~g~~~~ 110 (177)
T cd02010 36 YAPNTCLISN--GLATMGVALPGAIGAKLVY-PDRKVVAVSGDGGFM-MNSQE-LETAVRLKIPLVVLIWNDNGYGLIKW 110 (177)
T ss_pred CCCCCEEeCC--CChhhhhHHHHHHHHHHhC-CCCcEEEEEcchHHH-hHHHH-HHHHHHHCCCeEEEEEECCcchHHHH
Confidence 3567888653 3456665556666666542 3456665555 452 33344 4777778887666666666544210
Q ss_pred -----CC-CCCC--ChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 637 -----EG-LQHE--DGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 637 -----dG-~tHq--~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
.+ ..+. ..-|. .+.+.. ++..+.-.+..|+..+++.++.. ++ +.++.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~---~~-p~liev~~ 169 (177)
T cd02010 111 KQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAA---DG-VHVIDCPV 169 (177)
T ss_pred HHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhC---CC-CEEEEEEe
Confidence 01 0111 11233 344444 66777778999999999999876 33 36665543
No 347
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=59.89 E-value=13 Score=31.95 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=24.8
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+|++.+..+++|+.|..|++|+.++.
T Consensus 12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~ 38 (73)
T cd06663 12 GDGTVVKWLKKVGDKVKKGDVLAEIEA 38 (73)
T ss_pred cCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 479999999999999999999999874
No 348
>PRK12784 hypothetical protein; Provisional
Probab=59.65 E-value=9.8 Score=33.80 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=31.2
Q ss_pred cceee-eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 891 EKVSM-EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 891 ~K~~~-~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
||+.+ +|.||+-|+|.++++.+++.|-.=++|+.|+.
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~ 38 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRK 38 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEee
Confidence 34433 59999999999999999999999999988863
No 349
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=58.96 E-value=11 Score=41.14 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=30.4
Q ss_pred ceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 892 KVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 892 K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-.+.-|+||.+|++.. .++-|+.|++||+|+.|..
T Consensus 162 ~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 162 THERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred cceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 3467899999998866 8999999999999999863
No 350
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=58.30 E-value=79 Score=38.76 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=60.9
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ -.|.++..+ |- |||... +...+++ ++.+ |..-+.--+..+-..+.|-+.|.|..... ..+..++
T Consensus 39 i~~v~~-rhE~~A~~~--Ad--gyar~t-gk~gv~~~t~GP-G~~n~~~~i~~A~~~~~Pvl~I~G~~~~~--~~~~~~~ 109 (575)
T TIGR02720 39 IHYIQV-RHEEVGALA--AA--ADAKLT-GKIGVCFGSAGP-GATHLLNGLYDAKEDHVPVLALVGQVPTT--GMNMDTF 109 (575)
T ss_pred CcEEEe-ccHHHHHHH--HH--HHHHhh-CCceEEEeCCCC-cHHHHHHHHHHHhhcCCCEEEEecCCccc--cCCCCCc
Confidence 366665 889986654 44 577543 2333443 3332 22222211222223345545554433322 2233446
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
|.+....+++.+=. -.+...++.++...++.|++....+..|||+-++..
T Consensus 110 q~id~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 110 QEMNENPIYADVAV-YNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred ceechhhhhhhcce-EEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 77766777776533 234455566666666666654222334599988854
No 351
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=58.18 E-value=67 Score=39.32 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=64.7
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ -.|++++.+ |.| ||... +..-++ .++.+ |..-+.--+..+-..+.|-++|.|...+...+.+. +
T Consensus 53 i~~i~~-rhE~~A~~m--Adg--yar~t-g~~gv~~~t~Gp-G~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~--~ 123 (570)
T PRK06725 53 LKHILT-RHEQAAIHA--AEG--YARAS-GKVGVVFATSGP-GATNLVTGLADAYMDSIPLVVITGQVATPLIGKDG--F 123 (570)
T ss_pred CcEEEe-cCHHHHHHH--HHH--HHHHh-CCCeEEEECCCc-cHHHHHHHHHHHhhcCcCEEEEecCCCcccccCCC--C
Confidence 377765 899987655 544 77542 233344 33333 22222211222222345655565554443333332 5
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|......+++.+=. -.+...++.++..+++.|++... ++..|||+.++..
T Consensus 124 q~~d~~~l~~~itk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 124 QEADVVGITVPVTK-HNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred cccchhhhhhccce-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 55555567776643 34455678888888888876533 2334599988753
No 352
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=58.15 E-value=10 Score=44.50 Aligned_cols=28 Identities=43% Similarity=0.588 Sum_probs=25.7
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
..|+|.++++++||.|+.||+|++|+..
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtd 84 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETD 84 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEc
Confidence 5789999999999999999999999863
No 353
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=58.12 E-value=5.6 Score=43.78 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=18.3
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES 890 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt 890 (929)
..|.|.+++|++||.|++||+|+.|+.
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 458888999999999999999988874
No 354
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.61 E-value=19 Score=35.33 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=40.2
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeee-eecCCCEEEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSME-IPSSHNGVVREIK 909 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~-I~Ap~~G~v~~i~ 909 (929)
-+|-++...+..|+.|.+|++++-+.|-|-++- +++|.+|+|.=+.
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 468888999999999999999999999887665 8899999987654
No 355
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=57.47 E-value=87 Score=31.72 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=19.3
Q ss_pred EEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 658 PYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 658 v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
.+...++.++ .+++.|++.+.....|+++.+.
T Consensus 122 ~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 122 YTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred eEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 4444556677 7777777654433345777665
No 356
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=57.00 E-value=53 Score=39.87 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=63.2
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ ..|++++.+ |.| ||..- +...++ .++.+ |..-+.--+..+-.-+.|-++|.|.......+.++ +|
T Consensus 40 ~~v~~-~hE~~A~~~--Adg--yar~s-g~~gv~~~t~Gp-G~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q 110 (548)
T PRK08978 40 EHLLC-RHEQGAAMA--AIG--YARAT-GKVGVCIATSGP-GATNLITGLADALLDSVPVVAITGQVSSPLIGTDA--FQ 110 (548)
T ss_pred eEEEe-ccHHHHHHH--HHH--HHHHh-CCCEEEEECCCC-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCC--Cc
Confidence 66655 899987655 544 66542 233343 34433 22222211233323345545554444433333333 56
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
.+....+++.+-... +...++.++..+++.|++.... +..|||+.++..
T Consensus 111 ~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 111 EIDVLGLSLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccchhccccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 666667777765533 3334677888888888865433 224599988753
No 357
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=56.95 E-value=88 Score=38.12 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=63.4
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ ..|+++..+ |. |||... +...++ +++.+= ..-+.--+..+-..+.|-+.|.|.......+.++ +|
T Consensus 48 ~~v~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GpG-~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q 118 (557)
T PRK08199 48 RVIVC-RQEGGAAMM--AE--AYGKLT-GRPGICFVTRGPG-ATNASIGVHTAFQDSTPMILFVGQVARDFREREA--FQ 118 (557)
T ss_pred cEEEe-ccHHHHHHH--HH--HHHHhc-CCCEEEEeCCCcc-HHHHHHHHHHHhhcCCCEEEEecCCccccCCCCc--cc
Confidence 56655 889987654 44 476543 233343 343332 2222211233323345545554444333233322 56
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
.+....+++.+=.. .+...++.++..+++.|++.... +..||||.++..
T Consensus 119 ~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 119 EIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred ccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 67677788876543 34446777878888877764322 334699988743
No 358
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=56.46 E-value=11 Score=44.59 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=26.1
Q ss_pred CCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 900 SHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 900 p~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
-..|+|.++++++||.|+.||+|++|+..
T Consensus 103 ~~eG~I~~w~v~~GD~V~~Gq~L~~VEtd 131 (463)
T PLN02226 103 ITDGTLATFLKKPGERVQADEAIAQIETD 131 (463)
T ss_pred cceEEEEEEEeCCCCEecCCCEEEEEEec
Confidence 36789999999999999999999999853
No 359
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.59 E-value=12 Score=44.56 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.4
Q ss_pred eeeeecCCCEEEEEEeecCC-CcccCCCeEEEEe
Q psy2375 894 SMEIPSSHNGVVREIKVKVG-DKISKDSQILILE 926 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G-~~V~~G~~L~~i~ 926 (929)
...|+||.+|+|....+..| +.|.+|++|+.|.
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~Iv 349 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIY 349 (457)
T ss_pred CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEe
Confidence 46799999999987777888 5899999999874
No 360
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=55.44 E-value=27 Score=39.25 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=44.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecC
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCN 259 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N 259 (929)
.|++|.-++.|+|.- .-..++.|+++-||=.++ -..|-|...+..||+-+-++||+.
T Consensus 418 agplgwtipaalgv~-----------~adp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnna 474 (592)
T COG3960 418 AGPLGWTIPAALGVC-----------AADPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNA 474 (592)
T ss_pred cCCcccccchhhcee-----------ecCCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecch
Confidence 578888888887765 123567899999998887 568899999999999666676654
No 361
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=55.06 E-value=16 Score=45.18 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.4
Q ss_pred EEeecCCCcccCCCeEEEEee
Q psy2375 907 EIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 907 ~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+++||.|++||+|++++.
T Consensus 583 ~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 583 KRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred eEEecCCCEEcCCCEEEEEcH
Confidence 447999999999999999874
No 362
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=54.87 E-value=17 Score=37.98 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=38.4
Q ss_pred eeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEE
Q psy2375 872 MVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQIL 923 (929)
Q Consensus 872 ~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~ 923 (929)
.+++|+.|++||.+.-++-- .++.+--|.+ .++.+++|+.|..||.|.
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 45789999999999998855 4555666765 377899999999999764
No 363
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=54.46 E-value=80 Score=30.84 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=34.3
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc-cccccccccchHHHHHHHhhCCceEEEE
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL-DGPVRGNSKIIQELEAHFYGVGWNVIKV 291 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i-dg~v~~~~~~~~~l~~~f~~~Gw~vi~v 291 (929)
|-|.. ...+++..|...+++ +++|..+..... .+... -..+....++...+-.+.+
T Consensus 68 gpg~~---~~~~~l~~a~~~~~P-vl~i~~~~~~~~~~~~~~----q~~~~~~~~~~~~~~~~~~ 124 (154)
T cd06586 68 GTGLL---NAINGLADAAAEHLP-VVFLIGARGISAQAKQTF----QSMFDLGMYRSIPEANISS 124 (154)
T ss_pred CCcHH---HHHHHHHHHHhcCCC-EEEEeCCCChhhhccCcc----cccCHHHHHHHhhheEEEe
Confidence 78865 578899899999987 999987665432 11111 1123345667665544443
No 364
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=54.15 E-value=1.3e+02 Score=31.38 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=69.6
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC-
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING- 636 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~- 636 (929)
..|.+++..+ -.+.|+.-+.+++|.+... +-.|++++.. .| .+-..++ |.+..++.|-++++.-.+++..-.
T Consensus 41 ~~~~~~~~~~--~~g~mG~~lpaaiGa~la~-p~r~vv~i~GDG~f-~m~~~eL-~Ta~~~~lpvi~vV~NN~~yg~~~~ 115 (196)
T cd02013 41 EKPRSFIAPL--SFGNCGYALPAIIGAKAAA-PDRPVVAIAGDGAW-GMSMMEI-MTAVRHKLPVTAVVFRNRQWGAEKK 115 (196)
T ss_pred CCCCeEEcCC--CCcccccHHHHHHHHHHhC-CCCcEEEEEcchHH-hccHHHH-HHHHHhCCCeEEEEEECchhHHHHH
Confidence 3567888542 3455554456666665543 3456655555 45 2345554 778788887777776666543210
Q ss_pred -----CC-----CCCCChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 637 -----EG-----LQHEDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 637 -----dG-----~tHq~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
.+ ..+.. -|+ .++++. ++..+.-.+..|+..+++.+++.+..++ ++++.+..
T Consensus 116 ~q~~~~~~~~~~~~~~~-~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~-p~liev~v 178 (196)
T cd02013 116 NQVDFYNNRFVGTELES-ESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGK-TTVIEIVC 178 (196)
T ss_pred HHHHHcCCCcccccCCC-CCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCC-eEEEEEEe
Confidence 11 11112 233 344444 5666777889999999999987211133 36665543
No 365
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=53.79 E-value=16 Score=37.06 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=51.8
Q ss_pred cCChhhHHhhhcceeheeccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEE-------E-E
Q psy2375 835 SDTRKKLRDFFENIIHMKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGV-------V-R 906 (929)
Q Consensus 835 sgs~~~L~~~fgldae~Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~-------v-~ 906 (929)
|++--|++-|.|+|.-.+- |+.-+.+++.||+|++||+|++..-++..--=.+...=+ + .
T Consensus 67 t~~GvEiLiHiGiDTV~L~------------GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~ 134 (156)
T COG2190 67 TDEGVEILIHIGIDTVKLN------------GEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKK 134 (156)
T ss_pred cCCCcEEEEEeceeeEEEC------------CcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheee
Confidence 5666788888888865432 667889999999999999999887553322211111111 1 1
Q ss_pred EEeecCCCcccCCCeEEEEe
Q psy2375 907 EIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 907 ~i~~~~G~~V~~G~~L~~i~ 926 (929)
-+....+..|.+|+.++.+.
T Consensus 135 ~~~~~~~~~v~~g~~~~~~~ 154 (156)
T COG2190 135 IVKLSGGGEVKAGETLLLVI 154 (156)
T ss_pred eEeeccCcceecCCeeEEEe
Confidence 12233344788888887654
No 366
>PRK07524 hypothetical protein; Provisional
Probab=53.65 E-value=91 Score=37.72 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=67.9
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCC-CCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGE-GLQH 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~d-G~tH 641 (929)
|++.+ -.|.+++.+ |. |||... +...+++ +..+ |..-+.-=+..+-..+.|-++|.|.......+.+ +..|
T Consensus 41 ~~i~~-~hE~~A~~m--Ad--gyar~t-g~~gv~~~t~Gp-G~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~ 113 (535)
T PRK07524 41 RHVTP-RHEQGAGFM--AD--GYARVS-GKPGVCFIITGP-GMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLH 113 (535)
T ss_pred cEEEe-ccHHHHHHH--HH--HHHHHh-CCCeEEEECCCc-cHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccc
Confidence 66665 889987655 44 477543 2333443 3332 2222221133333345665666555443333332 3556
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
+.+....+++.+=. ..+...++.++...++.|++... ++..|||+-+++.
T Consensus 114 ~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 114 ELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred ccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 54566677777643 55677778888888888886433 3334699988754
No 367
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=53.56 E-value=21 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=27.1
Q ss_pred ecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 898 PSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 898 ~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.++.+|.+.++.+..|+.+..|++|+.++.
T Consensus 10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred CCCcEEEEEEEEECCCCEEcCCCEEEEEEe
Confidence 467899999999999999999999998864
No 368
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=53.20 E-value=17 Score=33.09 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=17.0
Q ss_pred EEEEeecCCCcccCCCeEEEEe
Q psy2375 905 VREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 905 v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+..+.+++|+.|++||.|+.+.
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEB
T ss_pred cccccceecccccCCCEEEecC
Confidence 4556789999999999999886
No 369
>PRK07064 hypothetical protein; Provisional
Probab=52.51 E-value=1e+02 Score=37.25 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=64.8
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCC-CCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGE-GLQH 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~d-G~tH 641 (929)
|++.+ ..|+++..+ |.| ||... +...++ .++.+ |..-+.-=+..+-..+.|-+.|.|...+...+.+ +..|
T Consensus 43 ~~i~~-~hE~~A~~~--A~g--yar~t-g~~~v~~~t~Gp-G~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~ 115 (544)
T PRK07064 43 RFVPA-RGEAGAVNM--ADA--HARVS-GGLGVALTSTGT-GAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIH 115 (544)
T ss_pred cEEee-ccHHHHHHH--HHH--HHHhc-CCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccc
Confidence 66655 899986654 555 66542 233443 33333 2222221122232334554555444333223333 2346
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|.+....+++.+-. ..+...++.++..+++.|++... ++..||||-++..
T Consensus 116 ~~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 116 EAPDQLTMLRAVSK-AAFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred cccCHHHHhhhhcc-eEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 65667778887654 34555677788878887775432 2234599988753
No 370
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=51.57 E-value=21 Score=37.90 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=37.7
Q ss_pred eeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeE
Q psy2375 872 MVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQI 922 (929)
Q Consensus 872 ~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L 922 (929)
+++.|+.+++||.+.-++-- .++++--|.+ .++.+++||.|..||.+
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETV 201 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEE
Confidence 46889999999999999855 4555666655 37899999999999854
No 371
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=51.42 E-value=19 Score=44.51 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=43.5
Q ss_pred cceeeeeeecCCeecC----CCeEEEEEecceeeeeecCCCEEEEEE---------------------------------
Q psy2375 866 VEVSTVMVKIGDTIKI----DQSLLVVESEKVSMEIPSSHNGVVREI--------------------------------- 908 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~----Gd~l~~iEt~K~~~~I~Ap~~G~v~~i--------------------------------- 908 (929)
|++... .++-|.|-. ||.+++.=++ .+|.||++|+|..+
T Consensus 487 G~v~~L-~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF 562 (627)
T PRK09824 487 GEVVPL-EQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFF 562 (627)
T ss_pred eEEeeH-HHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCc
Confidence 444333 355565555 7777765443 58999999999876
Q ss_pred --eecCCCcccCCCeEEEEeec
Q psy2375 909 --KVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 909 --~~~~G~~V~~G~~L~~i~~~ 928 (929)
++++||.|++||+|++++.+
T Consensus 563 ~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 563 TAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred eEEecCCCEEcCCCEEEEEcHH
Confidence 78899999999999998743
No 372
>KOG0238|consensus
Probab=51.11 E-value=13 Score=44.00 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=30.3
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...+.||..|+|.++++++|+.|..||.|+.++.
T Consensus 601 s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 601 SGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred CCceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 3448999999999999999999999999998763
No 373
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=50.95 E-value=35 Score=36.99 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=62.6
Q ss_pred EEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhccc-c---hhc---c
Q psy2375 252 LIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDG-E---YQN---Y 324 (929)
Q Consensus 252 li~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg-~---~q~---~ 324 (929)
+.+|||+..+.--.+-.|..+-.+.|++.|+..|+.|.... .-+...+.+.|.+..+- + +.. +
T Consensus 10 ~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~----------dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 10 LALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKN----------NLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred EEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEec----------CCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 77788877664212222211235789999999999987652 12445555665555442 2 111 1
Q ss_pred ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC--CcHHHHHHHHHHH--HhCCCCCeEEEEeeecccC
Q psy2375 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG--HDLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 325 ~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG--hD~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G 394 (929)
....|. ...+++. || -++++|...|... ....++|.++++..=+|.-
T Consensus 80 ~~sHG~--~~~l~~~---------------------D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~ 130 (241)
T smart00115 80 LLSHGE--EGGIYGT---------------------DHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDE 130 (241)
T ss_pred EcCCCC--CCeEEEe---------------------cCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCC
Confidence 122231 1233333 44 3677788887432 2335899999999988753
No 374
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.49 E-value=19 Score=40.27 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=29.5
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
..-|+||.+|.+ +..++.|+.|++||+|++|-+.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp 264 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDL 264 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 567999999966 6788999999999999998643
No 375
>PRK11269 glyoxylate carboligase; Provisional
Probab=50.39 E-value=1.4e+02 Score=36.76 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=64.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc--CCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS--NCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~--G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
|++.+ ..|++++.+ |. |||.. | ..-..+.++.+=.+.=+.- +..+-.-+.|-+.|.|.......+.+ .|
T Consensus 44 ~~v~~-rhE~~A~~m--Ad--GYar~t~g-~~gv~~~t~GPG~~N~l~g-l~~A~~~~~Pvl~I~G~~~~~~~~~~--~~ 114 (591)
T PRK11269 44 RHILA-RHVEGASHM--AE--GYTRATAG-NIGVCIGTSGPAGTDMITG-LYSASADSIPILCITGQAPRARLHKE--DF 114 (591)
T ss_pred cEEee-CCHHHHHHH--HH--HHHHHcCC-CcEEEEECCCCcHHHHHHH-HHHHhhcCCCEEEEecCCCccccCCC--cc
Confidence 77776 899987654 54 47654 3 1222334545421211111 22222334554555444333223332 26
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|.+....+++.+=. -.+...++.++..+++.|++... ++..||||-++..
T Consensus 115 q~~d~~~l~~~itk-~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 115 QAVDIESIAKPVTK-WAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred cccChhhHhhccee-EEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 76767778876543 34455677788888888876432 2334699988754
No 376
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=50.22 E-value=2.5e+02 Score=28.43 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=58.0
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeec---
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTIN--- 635 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g--- 635 (929)
.|.+++..+- +.|+.-+.+++|.+..- +-.+++++.. .|.+. ..+ ++.+..++.+.++++.-.+++..-
T Consensus 39 ~~~~~~~~~~---g~mG~~lp~aiGaala~-~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 39 RPGSYFTLRG---GGLGWGLPAAVGAALAN-PDRKVVAIIGDGSFMYT-IQA-LWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred CCCCeeccCC---ccccchHHHHHHHHhcC-CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 4678886543 55655456666666542 2345555544 44322 234 466667777666665555433321
Q ss_pred -----CC--------CCC-CCChhhHH-HHhcCCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 636 -----GE--------GLQ-HEDGHSHV-LASTIPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 636 -----~d--------G~t-Hq~~ed~~-l~r~iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
.+ +.. .....|+. +++.. ++..+.-.+..|+...++.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~ 168 (178)
T cd02002 113 LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAE 168 (178)
T ss_pred HHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhC
Confidence 00 000 00112332 33333 45555567799999999998875
No 377
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=50.20 E-value=22 Score=43.97 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=43.5
Q ss_pred ccceeeeeeecCCeecC----CCeEEEEEecceeeeeecCCCEEEEEE--------------------------------
Q psy2375 865 EVEVSTVMVKIGDTIKI----DQSLLVVESEKVSMEIPSSHNGVVREI-------------------------------- 908 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~----Gd~l~~iEt~K~~~~I~Ap~~G~v~~i-------------------------------- 908 (929)
.|++... .++-|.|-. ||.+++.=+ ...|.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 3444333 444555544 777776543 357999999998876
Q ss_pred ---eecCCCcccCCCeEEEEeec
Q psy2375 909 ---KVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 909 ---~~~~G~~V~~G~~L~~i~~~ 928 (929)
++++||.|++||+|++++.+
T Consensus 546 F~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 546 FEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred eEEEecCcCEEcCCCEEEEecHH
Confidence 79999999999999998743
No 378
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=49.79 E-value=2.3e+02 Score=29.38 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=61.6
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCc-EEEEeecCCeeecCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARG-FLIGGTSGRTTINGE 637 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~-v~i~~t~~~~~~g~d 637 (929)
.|.+++.. +.|+.-+++++|.+... +-.|++++.. .|.+ -..+ ++.++.++.++ ++++.-.++...-..
T Consensus 40 ~~~~~~~~-----g~mG~~lpaAiGaala~-p~~~Vv~i~GDG~f~m-~~~e-L~ta~~~~l~~i~ivV~NN~~yg~~~~ 111 (188)
T cd03371 40 HAQDFLTV-----GSMGHASQIALGIALAR-PDRKVVCIDGDGAALM-HMGG-LATIGGLAPANLIHIVLNNGAHDSVGG 111 (188)
T ss_pred ccCceeec-----CccccHHHHHHHHHHhC-CCCcEEEEeCCcHHHh-hccH-HHHHHHcCCCCcEEEEEeCchhhccCC
Confidence 35777764 56766567777776543 3456655555 4422 2334 35555565544 455555554322111
Q ss_pred CCCCCChhhH-HHHhcCCCcEE-EccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 638 GLQHEDGHSH-VLASTIPNCIP-YDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 638 G~tHq~~ed~-~l~r~iPnl~v-~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
..++...-|. .++++. ++.. +...+..|+..+++.+++. ++ ++++.+..
T Consensus 112 ~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~---~~-p~lIev~~ 162 (188)
T cd03371 112 QPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAA---DG-PAFIEVKV 162 (188)
T ss_pred cCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhC---CC-CEEEEEEe
Confidence 1111111222 234433 4442 4556899999999999875 22 35655543
No 379
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.61 E-value=1.1e+02 Score=37.51 Aligned_cols=119 Identities=5% Similarity=-0.067 Sum_probs=65.7
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|+++..+ |.| ||..- +...+++ ++.+= ..-+.--+..+-..+.|-++|.|.......+.+. +|
T Consensus 44 ~~i~~-rhE~~A~~m--Adg--Yar~t-g~~gv~~~t~GPG-~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q 114 (574)
T PRK07979 44 DHVLV-RHEQAAVHM--ADG--LARAT-GEVGVVLVTSGPG-ATNAITGIATAYMDSIPLVVLSGQVATSLIGYDA--FQ 114 (574)
T ss_pred eEEEe-CcHHHHHHH--HHH--HHHHh-CCceEEEECCCcc-HhhhHHHHHHHhhcCCCEEEEECCCChhccCCCC--Cc
Confidence 66664 889987665 554 77542 2445543 33332 2222211222323355656665555544444333 55
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
......+++.+=. -.+...++.++..+++.|++... ++..||||.++..
T Consensus 115 ~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 115 ECDMVGISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred eecHHHHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 5666677776544 34445678888888888886422 2334599988754
No 380
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=48.72 E-value=62 Score=39.75 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=63.5
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ ..|+++..+ |. |||..- +..-++ .++.+ |+.-+.--+..+-.-+.|-+.|.|..++...+.++ +|
T Consensus 53 ~~i~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GP-G~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~--~q 123 (585)
T CHL00099 53 KHILV-RHEQGAAHA--AD--GYARST-GKVGVCFATSGP-GATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDA--FQ 123 (585)
T ss_pred eEEEe-cCHHHHHHH--HH--HHHHhc-CCcEEEEECCCC-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCC--cc
Confidence 56664 899987654 54 477542 233343 33333 22222222333333456666666655544444444 33
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
.+....+++.+=. -.+...++.++..+++.|++.... +..|||+-++..
T Consensus 124 ~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 124 EVDIFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred ccchhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 3433455554421 344556778888888888765332 334599988753
No 381
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=48.70 E-value=1.1e+02 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEee
Q psy2375 365 LRKIYSAFKMAQKNKDKPTVLLIKS 389 (929)
Q Consensus 365 ~~~v~~a~~~a~~~~~~P~vI~~~T 389 (929)
-.+-.++|.++.+...+|+++||+|
T Consensus 71 ~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 71 TEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp -HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3456677777777778899999988
No 382
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=48.44 E-value=2.9e+02 Score=31.94 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=65.7
Q ss_pred CCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEE-EeecCCeeecCCC
Q psy2375 562 NGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLI-GGTSGRTTINGEG 638 (929)
Q Consensus 562 ~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i-~~t~~~~~~g~dG 638 (929)
|.+++.. +.|+.-+++|+|++... +-.+++++.. .| .+...++ ..++.++..++++ +.-.++...-+.-
T Consensus 214 ~~~f~~~-----GsMG~a~p~AlG~ala~-p~r~Vv~i~GDGsf-lm~~~eL-~t~~~~~~~nli~VVlNNg~~~~~g~q 285 (361)
T TIGR03297 214 ARDFLTV-----GSMGHASQIALGLALAR-PDQRVVCLDGDGAA-LMHMGGL-ATIGTQGPANLIHVLFNNGAHDSVGGQ 285 (361)
T ss_pred CCceEee-----chhhhHHHHHHHHHHHC-CCCCEEEEEChHHH-HHHHHHH-HHHHHhCCCCeEEEEEcCccccccCCc
Confidence 5677653 66765566777776553 3456666655 45 4466665 3444555445544 4444433211112
Q ss_pred CCCCChhhH-HHHhcCCCc-EEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 639 LQHEDGHSH-VLASTIPNC-IPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 639 ~tHq~~ed~-~l~r~iPnl-~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
+++....|+ .++++. ++ ..+...+..|+..+++.+++. ++ +.++.+..
T Consensus 286 ~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~---~g-p~lIeV~v 335 (361)
T TIGR03297 286 PTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSA---NG-PRLIEVKV 335 (361)
T ss_pred CCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhC---CC-cEEEEEEe
Confidence 233222333 345544 43 567889999999999999765 33 36665543
No 383
>PLN02573 pyruvate decarboxylase
Probab=48.43 E-value=78 Score=38.84 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=60.0
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|+++..+ |- |||..- + .++++ ++.+ |..-+.--+..+-.-+.|-+.|.|....-..+.++.+||
T Consensus 56 ~~i~~-rhE~~A~~m--Ad--gyaR~t-g-~gv~~~t~Gp-G~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~ 127 (578)
T PLN02573 56 NLIGC-CNELNAGYA--AD--GYARAR-G-VGACVVTFTV-GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH 127 (578)
T ss_pred eEEEe-CCHHHHHHH--HH--HHHHHh-C-CCeEEEecCc-cHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeee
Confidence 56554 889986654 44 477653 3 34443 3332 111111112222233556566655444334556666776
Q ss_pred Ch------hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 643 DG------HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~------ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
.. ....+++.+-. -.....++.++...++.|++.. .+++ |||+-++..
T Consensus 128 ~~~~~~~~~~~~~~~~itk-~s~~v~~~~~~~~~l~~A~~~A~~~~g-PV~l~iP~D 182 (578)
T PLN02573 128 TIGLPDFSQELRCFQTVTC-YQAVINNLEDAHELIDTAISTALKESK-PVYISVSCN 182 (578)
T ss_pred ecCCCChHHHHHHhhceEE-EEEEeCCHHHHHHHHHHHHHHHHhcCC-CEEEEeehh
Confidence 42 22345554432 2334455566665666666442 2343 699988754
No 384
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=48.27 E-value=52 Score=35.58 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=61.2
Q ss_pred EEEEEecCCCc-----ccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc---
Q psy2375 252 LIMIVNCNLQR-----LDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN--- 323 (929)
Q Consensus 252 li~vvn~N~~~-----idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~--- 323 (929)
+.+|||+..+. .+|+.. -.+.|+..|+..|+.|.... .-....+.+.+.+..+-+.+.
T Consensus 11 ~aLII~n~~f~~~~~~r~g~~~----D~~~l~~~f~~lgF~V~~~~----------nlt~~~~~~~l~~f~~~~~~~~d~ 76 (243)
T cd00032 11 LALIINNENFDKGLKDRDGTDV----DAENLTKLFESLGYEVEVKN----------NLTAEEILEELKEFASPDHSDSDS 76 (243)
T ss_pred EEEEEechhcCCCCCCCCChHH----HHHHHHHHHHHCCCEEEEeC----------CCCHHHHHHHHHHHHhccCCCCCe
Confidence 66777775543 333332 35779999999999997652 124455666665554311111
Q ss_pred ---cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHH--HHhCCCCCeEEEEeeecccCC
Q psy2375 324 ---YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 324 ---~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G~ 395 (929)
+...+|. +..+++.| -.+-.+++|...|.. .....++|.++++..=+|--.
T Consensus 77 ~v~~~~sHG~--~~~l~~~D-------------------~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~ 132 (243)
T cd00032 77 FVCVILSHGE--EGGIYGTD-------------------GDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDEL 132 (243)
T ss_pred eEEEECCCCC--CCEEEEec-------------------CcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcC
Confidence 1122231 13333331 013356677777763 223458999999999887543
No 385
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=47.21 E-value=1.3e+02 Score=36.52 Aligned_cols=122 Identities=15% Similarity=0.030 Sum_probs=65.9
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED 643 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~ 643 (929)
|++.+ -.|+++..+ |.| ||..- +..-++.+.+-=|+.-+.--+..+-.-+.|-+.|.|...+...+..-..||.
T Consensus 42 ~~i~~-rhE~~A~~m--Adg--yar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~ 115 (554)
T TIGR03254 42 RYIGF-RHEQSAGYA--AAA--AGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEE 115 (554)
T ss_pred cEEEe-CCHHHHHHH--HHH--HHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcch
Confidence 77765 899987655 554 66442 2444544433223222222233333445666666555443322111223676
Q ss_pred hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 644 GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 644 ~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
.....+++.+=. -.+...++.++...+..|++... ++..|||+-++..
T Consensus 116 ~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 116 MDQLAAAKPFAK-AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred hhHHHHhhhhhe-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 666778876644 35556677777777777775432 2223499988754
No 386
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=46.92 E-value=1.5e+02 Score=29.83 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHcCCCeEEEEEe-c-CCCcccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVN-C-NLQRLDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn-~-N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
..++.+.+++..+ ++.+++.. . +....+||+. ...+....|+.. |+.|+.
T Consensus 86 ~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH----~~~~~~~~~~~iP~~~v~~ 138 (168)
T smart00861 86 RAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTH----HSQEDEALLRAIPGLKVVA 138 (168)
T ss_pred HHHHHHHHhCccc-CCCEEEEecCccccCCCCccc----cchhHHHHHhcCCCcEEEe
Confidence 4788888888777 33444444 3 4445556653 356677778875 666554
No 387
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.72 E-value=3e+02 Score=33.92 Aligned_cols=119 Identities=14% Similarity=0.024 Sum_probs=65.6
Q ss_pred CceEeccccchhhHHHHHHHHHHHhc-cCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYST-SNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~-~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t 640 (929)
=|++.+ -.|++++.+ |. |||. .| ...+++ ++.+ |..-+.--+..+-..+.|-++|.|...+...+.+ +
T Consensus 50 i~~I~~-rhE~~A~~m--Ad--gyar~tg--~~gv~~~t~GP-G~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~--~ 119 (595)
T PRK09107 50 IQHILV-RHEQGAGHA--AE--GYARSTG--KPGVVLVTSGP-GATNAVTPLQDALMDSIPLVCITGQVPTHLIGSD--A 119 (595)
T ss_pred CeEEEE-CChHHHHHH--HH--HHHHHhC--CCEEEEECCCc-cHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCCC--C
Confidence 477776 899997765 54 4774 34 334443 3332 2222221133333345665555554443333332 3
Q ss_pred CCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 641 HEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 641 Hq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
+|.+....+++.+=. -.+...++.++..+++.|++.... +..|||+.++..
T Consensus 120 ~q~~d~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 120 FQECDTVGITRPCTK-HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred CcccchhhhhhhheE-EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence 666655667766533 334556778888888888865433 234699888754
No 388
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=45.97 E-value=2.1e+02 Score=29.17 Aligned_cols=116 Identities=6% Similarity=-0.118 Sum_probs=55.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|+++..+ |-| ||..- +..-++ .++.+-...=+.- +-.+-..+.|-+.|.|.......+ -.+||
T Consensus 37 ~~v~~-rhE~~A~~m--Adg--yar~s-g~~gv~~~t~GpG~~n~~~g-l~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q 107 (162)
T cd07037 37 RLHVR-VDERSAAFF--ALG--LAKAS-GRPVAVVCTSGTAVANLLPA-VVEAYYSGVPLLVLTADRPPELRG--TGANQ 107 (162)
T ss_pred eEEec-cChHHHHHH--HHH--HHHhh-CCCEEEEECCchHHHHHhHH-HHHHHhcCCCEEEEECCCCHHhcC--CCCCc
Confidence 56654 889987665 544 65432 123333 3333322221111 222222345545554443322222 23477
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHH------HHHHHHHHHhhccC-CCceEEEEE
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHE------VAIIIHHGLHCMIS-NQEDVFYYI 689 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E------~~~~l~~al~~~~g-~~~~v~~rl 689 (929)
...+..+++.+=.. .....++.+ +..+++.|++.... +..|||+-+
T Consensus 108 ~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 108 TIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred ccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 77777777766442 233333344 55566666654422 223488754
No 389
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.87 E-value=23 Score=39.72 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=28.5
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..-|+||.+|.+ ...++.|+.|++||+|++|-+
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~d 261 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVD 261 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeC
Confidence 457999999976 666899999999999999854
No 390
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=45.71 E-value=1.6e+02 Score=36.66 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=40.1
Q ss_pred cEEEEEEcCCccCCcccHHHH-HHHHHcCCCeEEEEEecCCCc-ccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEI-SMAAREKLDNLIMIVNCNLQR-LDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl-~~A~~~~L~nli~vvn~N~~~-idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
.++||.+ -+.+-. .+++.+ +.++..+++ ++|+++..+.. -|||+- .-+.++ ..|+.. |+.|+.-
T Consensus 376 ~~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~lp-V~i~~~~~G~~g~dG~tH---~~~~di-a~lr~iPgl~V~~P 442 (617)
T TIGR00204 376 YKPFVAI-YSTFLQ-RAYDQVVHDVCIQKLP-VLFAIDRAGIVGADGETH---QGAFDI-SYLRCIPNMVIMAP 442 (617)
T ss_pred CEEEEEe-cHHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCCCCCccc---ccchHH-HHHhcCCCcEEEee
Confidence 3555555 555554 677777 568889986 99998876653 334443 223444 467775 8887663
No 391
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=45.69 E-value=2e+02 Score=35.32 Aligned_cols=119 Identities=7% Similarity=-0.013 Sum_probs=68.2
Q ss_pred CCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeec----
Q psy2375 562 NGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTIN---- 635 (929)
Q Consensus 562 ~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g---- 635 (929)
|.+++..+- .++||.-+.+++|.+..- +-.+++++.. .|. +-+.++ |.+..++.+-++++.-.+++..-
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~-p~~~vv~i~GDGsf~-~~~~el-~Ta~~~~lpv~~vV~NN~~~g~i~~~q 472 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLAD-PGRQVISMSGDGGLS-MLLGEL-LTVKLYDLPVKVVVFNNSTLGMVKLEM 472 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhC-CCCcEEEEEcCchHh-hhHHHH-HHHHHhCCCeEEEEEECCccccHHHHH
Confidence 456765432 566765456666666543 3345544444 553 344554 78888888877777666654421
Q ss_pred --CCCC----CCCChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 636 --GEGL----QHEDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 636 --~dG~----tHq~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
..+. ..+. -|+ .+..+. ++..+.-.+..|+..+++.+++. ++| +++.+..
T Consensus 473 ~~~~~~~~~~~~~~-~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~---~gp-~lIev~~ 529 (578)
T PRK06546 473 LVDGLPDFGTDHPP-VDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAH---PGP-ALVDVVT 529 (578)
T ss_pred HhcCCCcccccCCC-CCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhC---CCC-EEEEEEe
Confidence 1111 1112 233 344444 55566667899999999999875 333 6665544
No 392
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.00 E-value=1.5e+02 Score=36.29 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=67.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|++++.+ |.| ||... +...++ .++.+ |+.-+.-=+-.+-..+.|-++|.|...+...+.+ .+|
T Consensus 43 ~~v~~-rhE~~A~~~--Adg--yar~t-g~~gv~~~t~Gp-G~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~q 113 (563)
T PRK08527 43 KHILT-RHEQAAVHA--ADG--YARAS-GKVGVAIVTSGP-GFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTD--AFQ 113 (563)
T ss_pred eEEEe-ccHHHHHHH--HHH--HHhhh-CCCEEEEECCCC-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--CCc
Confidence 66665 899987665 544 77543 234443 33333 2222222122332334555555555444333332 356
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
.+....+++.+=. -.+...++.++..+++.|++... ++..|||+-++..
T Consensus 114 ~~d~~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 114 EIDAVGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred ccchhhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 6666677777643 44566888899999999887543 2323699988743
No 393
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=44.93 E-value=1.3e+02 Score=36.84 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=63.9
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|++++.+ |.| ||... +...+++ ++.+ |..-+.--+-.+-.-+.|-++|.|...+...+.+. +|
T Consensus 50 ~~i~~-rhE~~A~~~--Adg--yar~t-g~~gv~~~t~GP-G~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~--~q 120 (566)
T PRK07282 50 RHILA-RHEQGALHE--AEG--YAKST-GKLGVAVVTSGP-GATNAITGIADAMSDSVPLLVFTGQVARAGIGKDA--FQ 120 (566)
T ss_pred eEEEe-cCHHHHHHH--HHH--HHHHh-CCCeEEEECCCc-cHHHHHHHHHHHhhcCCCEEEEecccccccCCCCC--cc
Confidence 77776 899997665 554 77542 2444443 3332 22222211222223355655565554544455444 44
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
......+++.+=.. .+...++.++..+++.|++... ++..|||+.++..
T Consensus 121 ~~d~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 121 EADIVGITMPITKY-NYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred ccChhchhcCCCce-eEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 44555666665442 3344567777777777776532 2224599988754
No 394
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=44.92 E-value=86 Score=37.94 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc
Q psy2375 197 PLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL 263 (929)
Q Consensus 197 ~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i 263 (929)
.|.|+|.+++ ....+++++||=++=-- ..+|-+......+=.|||+|||+=.|
T Consensus 428 vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgI 480 (566)
T COG1165 428 VSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGI 480 (566)
T ss_pred HHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCcee
Confidence 5678888822 22349999999876422 23344455555554678888886443
No 395
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=44.90 E-value=1.6e+02 Score=30.80 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=72.7
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC-
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING- 636 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~- 636 (929)
..|.++++.| -.+.|+.-+.+++|.++.. +-.|++++.. .| .+-+.|+ |.+..++.|.++++.-.+++..-.
T Consensus 45 ~~~~~~~~~~--~~GsmG~~lpaaiGa~la~-p~~~vv~i~GDG~f-~m~~~eL-~Ta~~~~lpviivV~NN~~yg~~~~ 119 (202)
T cd02006 45 YKPRHWINCG--QAGPLGWTVPAALGVAAAD-PDRQVVALSGDYDF-QFMIEEL-AVGAQHRIPYIHVLVNNAYLGLIRQ 119 (202)
T ss_pred CCCCeEEccC--CccchhhhhHHHHhHHhhC-CCCeEEEEEeChHh-hccHHHH-HHHHHhCCCeEEEEEeCchHHHHHH
Confidence 3567888653 4566775556777766543 3456666555 45 3344554 777788888777777666544210
Q ss_pred ------C----CCCCCC---------hhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 637 ------E----GLQHED---------GHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 637 ------d----G~tHq~---------~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
. +..+.. .-|. .++++. ++..+.-.+..|+..+++.++..+...+.++++.+..
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i 193 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence 0 011111 1233 344444 6777888999999999999986211012236665543
No 396
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=44.80 E-value=33 Score=38.22 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=29.6
Q ss_pred ceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 892 KVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 892 K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+....|+||.+|.+. ..++.|+.|++||+|+.|.+
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d 251 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATITD 251 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCCCEECCCCEEEEEEC
Confidence 334679999999875 58999999999999999853
No 397
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=44.71 E-value=1.6e+02 Score=36.84 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=38.8
Q ss_pred EEEEEEcCCccCCcccHHHH-HHHHHcCCCeEEEEEecCCC-cccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 222 KIWILCGDGEMDEPESISEI-SMAAREKLDNLIMIVNCNLQ-RLDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 222 ~v~~~~GDGe~~eg~~~eAl-~~A~~~~L~nli~vvn~N~~-~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
+.|+.+ =..+-. .+++.+ +.++..+|+ ++||++.-+. .-|||+-- .+.++ ..|+.. |+.|+.-
T Consensus 386 ~P~v~~-f~~Fl~-ra~dQI~~~~a~~~lp-v~~v~~~~G~~g~dG~THq---~~~di-a~lr~iPnl~V~~P 451 (641)
T PRK12571 386 KPFCAV-YSTFLQ-RGYDQLLHDVALQNLP-VRFVLDRAGLVGADGATHA---GAFDL-AFLTNLPNMTVMAP 451 (641)
T ss_pred EEEEEe-hHHHHH-HHHHHHHHHHhhcCCC-eEEEEECCCcCCCCCcccc---ccHHH-HHHhcCCCCEEEee
Confidence 344443 334544 778888 558999986 8888876653 33455432 23333 567775 8887763
No 398
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=44.61 E-value=85 Score=38.12 Aligned_cols=118 Identities=16% Similarity=0.073 Sum_probs=55.0
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC-
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH- 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH- 641 (929)
|++.+ -.|+++.-+ |. |||..- +...++. ++.+ |..-+.--+..+-..+.|-+.|.|....-..+.+..+|
T Consensus 40 ~~v~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~Gp-G~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~ 112 (535)
T TIGR03394 40 PLHTL-SHEPAVGFA--AD--AAARYR-GTLGVAAVTYGA-GAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHH 112 (535)
T ss_pred eEEcc-cCcchHHHH--Hh--HHHHhh-CCceEEEEecch-HHHhhhhHHHHHhhcCCCEEEEECCCCcccccCCceeEe
Confidence 67764 899986544 44 477542 2344443 3332 22222211222323345545554443332334444444
Q ss_pred CC--hh-hHHHHhcCCCc--EEEccCCHH-HHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 642 ED--GH-SHVLASTIPNC--IPYDPTFAH-EVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~--~e-d~~l~r~iPnl--~v~~Pada~-E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
|. +. ...+++.+=.. .|..|.+.. .+..+++.++.. ++ ||||-++..
T Consensus 113 ~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~---~g-Pv~i~iP~D 165 (535)
T TIGR03394 113 QGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSAREL---SR-PVYLEIPRD 165 (535)
T ss_pred eccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHC---CC-CEEEEechh
Confidence 43 32 34666665332 333444422 234444444443 43 599988764
No 399
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=44.00 E-value=2.7e+02 Score=28.33 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=58.4
Q ss_pred hcCCceE-eccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC
Q psy2375 560 EKNGQIL-QEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING 636 (929)
Q Consensus 560 ~~~gR~~-~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~ 636 (929)
..|.+++ +.|.. .|+.-+++++|.+... -+|++++.. .|.+ -..++ |.+..++.+-++++.-.+++..-.
T Consensus 39 ~~~~~~~~~~g~g---~mG~~l~~aiGa~la~--~~~Vv~i~GDGsf~m-~~~eL-~ta~~~~l~v~ivVlNN~~~g~~~ 111 (175)
T cd02009 39 DKTVRVFANRGAS---GIDGTLSTALGIALAT--DKPTVLLTGDLSFLH-DLNGL-LLGKQEPLNLTIVVINNNGGGIFS 111 (175)
T ss_pred CCCceEEecCCcc---chhhHHHHHHHHHhcC--CCCEEEEEehHHHHH-hHHHH-HhccccCCCeEEEEEECCCCchhe
Confidence 3467887 44432 2333334555554432 345555544 5533 24554 777777777666666666443211
Q ss_pred CCCCC-------------CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 637 EGLQH-------------EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 637 dG~tH-------------q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
....+ +...-..++++. |+..+.-.+..|+...++.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~ 164 (175)
T cd02009 112 LLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQ 164 (175)
T ss_pred eccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhC
Confidence 01000 011112244443 55667778999999999999875
No 400
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=43.52 E-value=28 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.7
Q ss_pred eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 893 VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-..-++||.+|.+ +..++.|+.|++||+|++|-+
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~d 255 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTD 255 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEEC
Confidence 3457999999976 677899999999999999843
No 401
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=42.46 E-value=29 Score=39.97 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=27.5
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-|+||.+|.+ .-.++.|+.|++||+|++|-.
T Consensus 291 ~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d 321 (359)
T cd06250 291 MLYAPAGGMV-VYRAAPGDWVEAGDVLAEILD 321 (359)
T ss_pred EEeCCCCeEE-EEecCCCCEecCCCEEEEEEC
Confidence 4999999976 677899999999999999854
No 402
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=42.34 E-value=3.1e+02 Score=26.16 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=38.4
Q ss_pred EEEEEEcCCccCC-cccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEE
Q psy2375 222 KIWILCGDGEMDE-PESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291 (929)
Q Consensus 222 ~v~~~~GDGe~~e-g~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v 291 (929)
...+++|+|+..- +...+-+..+......++-+.+..|+..++ .+..+.+..+|+..+.+
T Consensus 46 ~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l~~~~~~~i~~ 106 (166)
T PF04055_consen 46 VKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLD----------EELLDELKKLGVDRIRI 106 (166)
T ss_dssp HEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHHHHTTCSEEEE
T ss_pred CcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccchh----------HHHHHHHHhcCccEEec
Confidence 3455667776555 445555555555533468888888865543 45667778888777776
No 403
>PRK08611 pyruvate oxidase; Provisional
Probab=42.24 E-value=1.6e+02 Score=36.05 Aligned_cols=119 Identities=11% Similarity=0.032 Sum_probs=61.3
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++. ...|+++..+ |.| ||... +..-++ .++.+ |..-+.-=+-.+-..+.|-++|.|.......+. |. +|
T Consensus 45 ~~i~-~rhE~~A~~m--Adg--yar~t-g~~gv~~~t~GP-G~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~-~~-~q 115 (576)
T PRK08611 45 KFIQ-VRHEEVAALA--AAA--YAKLT-GKIGVCLSIGGP-GAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGT-DF-FQ 115 (576)
T ss_pred eEEE-eCcHHHHHHH--HHH--HHHHh-CCceEEEECCCC-cHHHHHHHHHHHhhcCCCEEEEecCCcccccCC-CC-cc
Confidence 6665 4889986654 544 66432 233333 33333 221111112222223455455544433322322 22 56
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
.+....+++.+-. -.+...++.++..+++.|++....+..||||-++..
T Consensus 116 ~~d~~~l~~~itk-~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 116 EVNLEKMFEDVAV-YNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred ccCHHHHhhcccc-eeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 5666678887744 345566677777777777654322224599988754
No 404
>PF13437 HlyD_3: HlyD family secretion protein
Probab=42.16 E-value=38 Score=31.15 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=13.2
Q ss_pred cceeeeeeecCCeecCCCeEEEEE
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVE 889 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iE 889 (929)
|.|..+.++.|+.|.+|++|+.|.
T Consensus 8 G~V~~~~~~~G~~v~~g~~l~~i~ 31 (105)
T PF13437_consen 8 GVVVSINVQPGEVVSAGQPLAEIV 31 (105)
T ss_pred EEEEEEeCCCCCEECCCCEEEEEE
Confidence 455555555555555555555554
No 405
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.81 E-value=1.7e+02 Score=35.88 Aligned_cols=119 Identities=13% Similarity=0.005 Sum_probs=63.9
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|+++..+ |. |||... +...++ .++.+ |..-+.--+..+-.-+.|-++|.|.......+. | .||
T Consensus 44 ~~i~~-rhE~~A~~m--Ad--gyar~t-g~~gv~~vt~GP-G~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q 114 (574)
T PRK06466 44 EHILV-RHEQAATHM--AD--GYARAT-GKTGVVLVTSGP-GATNAITGIATAYMDSIPMVVLSGQVPSTLIGE-D-AFQ 114 (574)
T ss_pred eEEEe-CcHHHHHHH--HH--HHHHHh-CCCEEEEECCCc-cHHHHHHHHHHHHhcCCCEEEEecCCCccccCC-C-ccc
Confidence 66654 899987654 54 477543 233343 33333 222222223333334556555555444333332 2 367
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
.+....+++.+-.. .+...++.++..+++.|++... ++..|||+.++..
T Consensus 115 ~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 115 ETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred ccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 66666788776553 4455567777777777775432 2334599988764
No 406
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=40.60 E-value=43 Score=37.81 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=29.1
Q ss_pred eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 893 VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...-|+||.+|.+ .-.++.|+.|++||+|++|.+
T Consensus 243 ~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d 276 (316)
T cd06252 243 ARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHF 276 (316)
T ss_pred CcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEEC
Confidence 3457999999976 677999999999999999864
No 407
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=40.05 E-value=37 Score=41.95 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=40.4
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEeccee-------eeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEKVS-------MEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~-------~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
+|+--+.+++.||+|++||+|+++.-++.. ..|--.-......+....+..|..|+.+..+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 466789999999999999999998754332 2221111222234445566779999988764
No 408
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=39.82 E-value=72 Score=33.41 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=27.6
Q ss_pred HHHHhhccccCCCCcEEEEEEcCC-ccCCcccHHHHHHHHHcCC
Q psy2375 207 LKYLHARKITNTINRKIWILCGDG-EMDEPESISEISMAAREKL 249 (929)
Q Consensus 207 ~kyl~~r~~~~~~~~~v~~~~GDG-e~~eg~~~eAl~~A~~~~L 249 (929)
...|.++. ..+...++++|+|++ +.+++...+++..+...+.
T Consensus 95 ~~~L~~~~-~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I 137 (187)
T cd01452 95 QLALKHRQ-NKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNV 137 (187)
T ss_pred HHHHhcCC-CcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 34455441 122334777777777 9999988888887777665
No 409
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=39.68 E-value=13 Score=35.16 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCcEEEEEeChhHHHHH--HHHHHhccCCCceEEEEcc
Q psy2375 725 KLKVQLIGSGAILREIL--ASKILLQEWDIDSAVWSAT 760 (929)
Q Consensus 725 g~dv~Lia~G~~v~~al--AAe~L~~~~GI~a~Vvsv~ 760 (929)
.+++.|+|+|......- ..+.|++. ||.+++-+-+
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~-GI~ve~m~T~ 89 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKK-GIGVEVMDTP 89 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTT-T-EEEEE-HH
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHc-CCeEEEECHH
Confidence 57999999998753322 56678777 9988887753
No 410
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=39.20 E-value=1.9e+02 Score=35.34 Aligned_cols=120 Identities=13% Similarity=-0.009 Sum_probs=64.8
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++.+ ..|++++.+ |.| ||... +..-++ .++.+ |..-+.--+..+-..+.|-++|.|.......+.++ +
T Consensus 52 i~~i~~-~hE~~A~~~--Adg--yar~t-g~~gv~~~t~Gp-G~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~ 122 (564)
T PRK08155 52 IRHILA-RHEQGAGFI--AQG--MARTT-GKPAVCMACSGP-GATNLVTAIADARLDSIPLVCITGQVPASMIGTDA--F 122 (564)
T ss_pred ceEEEe-ccHHHHHHH--HHH--HHHHc-CCCeEEEECCCC-cHHHHHHHHHHHHhcCCCEEEEeccCCcccccCCC--c
Confidence 367764 899987654 554 66543 233333 34343 22222222333333455655555444433333322 5
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
|.+....+++.+-.. .+.-.++.++..+++.|++.... +..||||-++..
T Consensus 123 q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 123 QEVDTYGISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred cccchhhhhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 556556777776553 33345778888888888875432 224599988743
No 411
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=39.18 E-value=4.5e+02 Score=27.09 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=59.0
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcC-CcEEEEeecCCeeecCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRA-RGFLIGGTSGRTTINGE 637 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~-~~v~i~~t~~~~~~g~d 637 (929)
.|.+++. .++|+.-+.+++|.+..- -.|++++.. .|. +-+.++ +.++.++. +-++++.-.+++..-+.
T Consensus 34 ~~~~~~~-----~gsmG~~lpaAiGa~la~--~~~Vv~i~GDG~f~-m~~~el-~ta~~~~~~pv~~vV~NN~~yg~~~~ 104 (181)
T TIGR03846 34 RPLNFYM-----LGSMGLASSIGLGLALAT--DRTVIVIDGDGSLL-MNLGVL-PTIAAESPKNLILVILDNGAYGSTGN 104 (181)
T ss_pred CCCCeee-----ccccccHHHHHHHHHHcC--CCcEEEEEcchHHH-hhhhHH-HHHHHhCCCCeEEEEEeCCccccccC
Confidence 4677774 566765556666666543 345555555 442 233454 44555663 55555555554432110
Q ss_pred CCCCC-ChhhH-HHHhcCCCcEEEc-cCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 638 GLQHE-DGHSH-VLASTIPNCIPYD-PTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 638 G~tHq-~~ed~-~l~r~iPnl~v~~-Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
-.+.. ..-|. .++++. |+..+. ..+..|+..+++ +++. ++| .++.+..
T Consensus 105 q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~~---~~p-~li~v~~ 155 (181)
T TIGR03846 105 QPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALAM---KGP-TFIHVKV 155 (181)
T ss_pred cCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHcC---CCC-EEEEEEe
Confidence 00111 01122 344433 344344 677899999997 7654 333 5555543
No 412
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=39.17 E-value=63 Score=33.34 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=22.7
Q ss_pred cceeeeeeecCCeecCCCeEEEEEec
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVESE 891 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt~ 891 (929)
|.--+++++.||+|++||+|+++.-+
T Consensus 101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 101 GEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred CCceEEEecCCCEEeCCCEEEEEcHH
Confidence 56778999999999999999998753
No 413
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=38.82 E-value=4.5e+02 Score=26.99 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=70.9
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeec---
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTIN--- 635 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g--- 635 (929)
.|.+++.. .-.++|+.-+++++|.+..- +-.+++.+.. .| .+-..+ +|.+..++.+.++++.-.+++...
T Consensus 39 ~~~~~~~~--~~~g~mG~~l~~aiGaala~-~~~~vv~i~GDG~f-~~~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~ 113 (183)
T cd02005 39 KGTRFISQ--PLWGSIGYSVPAALGAALAA-PDRRVILLVGDGSF-QMTVQE-LSTMIRYGLNPIIFLINNDGYTIERAI 113 (183)
T ss_pred CCCEEEec--cchhhHhhhHHHHHHHHHhC-CCCeEEEEECCchh-hccHHH-HHHHHHhCCCCEEEEEECCCcEEEEEe
Confidence 45677764 24456665556666665442 2345555544 55 233445 477778888877777777765421
Q ss_pred -CCCCCCCCh--hhH-HHHhcC---CCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 636 -GEGLQHEDG--HSH-VLASTI---PNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 636 -~dG~tHq~~--ed~-~l~r~i---Pnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
+.+..+... .|. .++... |++..+...+..|+..+++.++++. ++ ++++.+..
T Consensus 114 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~--~~-p~liev~~ 173 (183)
T cd02005 114 HGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNR--DK-LSLIEVIL 173 (183)
T ss_pred ccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcC--CC-cEEEEEEc
Confidence 111122211 222 344443 3477778899999999999999721 22 36666543
No 414
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=38.82 E-value=2e+02 Score=35.22 Aligned_cols=119 Identities=10% Similarity=-0.033 Sum_probs=64.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ ..|+++..+ |. |||..- +...++. ++.+= ..-+.--+..+-..+.|-+.|.|...+...+.+. +|
T Consensus 45 ~~i~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GpG-~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q 115 (572)
T PRK06456 45 RHVLM-RHEQAAAHA--AD--GYARAS-GVPGVCTATSGPG-TTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMA--FQ 115 (572)
T ss_pred eEEEe-CcHHHHHHH--HH--HHHHhh-CCCEEEEeCCCCC-HHHHHHHHHHHHhhCCCEEEEecCCCccccCCCC--cc
Confidence 56654 889997654 54 477542 2333433 44442 2222222333333456666665555544344433 44
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
.+....+++.+-.. .+...++.++...++.|++... ++..|||+-++..
T Consensus 116 ~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 116 EADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred ccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 45555677766553 3334667788778887776322 2324599888753
No 415
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=38.80 E-value=2.2e+02 Score=35.17 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=64.7
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|++++.+ |. |||..- +...++ .++.+ |+.-+.--+..+-..+.|-++|.|.......+.++ +|
T Consensus 71 ~~v~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GP-G~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~--~q 141 (612)
T PRK07789 71 RHVLV-RHEQGAGHA--AE--GYAQAT-GRVGVCMATSGP-GATNLVTPIADANMDSVPVVAITGQVGRGLIGTDA--FQ 141 (612)
T ss_pred eEEEe-ccHHHHHHH--HH--HHHHHh-CCCEEEEECCCc-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCc--Cc
Confidence 66665 899987654 54 466542 133343 33332 22222222333333455655565544433333333 55
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
......+++.+-. -.+...++.++..+++.|++... ++..||||.++..
T Consensus 142 ~~d~~~l~~~~tk-~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 142 EADIVGITMPITK-HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred ccchhhhhhccee-EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 5666677776654 33456678888888888886432 2334599888753
No 416
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=38.60 E-value=2.3e+02 Score=27.95 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=56.9
Q ss_pred CCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCC---
Q psy2375 562 NGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEG--- 638 (929)
Q Consensus 562 ~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG--- 638 (929)
|.+++..+ -.+.|+.-+++++|.+... +-.+++++..--+++-...-+|.+..++.+.++++--.++.......
T Consensus 36 ~~~~~~~~--~~g~~G~~~~~a~Gaa~a~-~~~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~ 112 (168)
T cd00568 36 GRRFLTST--GFGAMGYGLPAAIGAALAA-PDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEA 112 (168)
T ss_pred CCcEEeCC--CchhhhhhHHHHHHHHHhC-CCCcEEEEEcCcHHhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHH
Confidence 34444332 2355655556667766553 23445555552222223333566777777655555554433211100
Q ss_pred -------CCCCChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 639 -------LQHEDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 639 -------~tHq~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
.......|+ .+++.. ++......+..|+..+++.+++.
T Consensus 113 ~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~ 158 (168)
T cd00568 113 FYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAA 158 (168)
T ss_pred HcCCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhC
Confidence 011112233 244443 55666667788999999988755
No 417
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=38.59 E-value=1.3e+02 Score=37.04 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHcCCCeEEEEEecCCCc--ccccccccccchHHHHHHHhh-CCceEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVNCNLQR--LDGPVRGNSKIIQELEAHFYG-VGWNVIK 290 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn~N~~~--idg~v~~~~~~~~~l~~~f~~-~Gw~vi~ 290 (929)
...-|+.+|+-.+|+ +++|+---.+. -|||+-- .++.|.. +|+ .+.+|++
T Consensus 440 Y~r~AiRlaALm~l~-~~~V~THDSIgvGEDGPTHq---PiEqLa~-LRaiPN~~V~R 492 (663)
T COG0021 440 YARPAVRLAALMGLP-VIYVFTHDSIGVGEDGPTHQ---PVEQLAS-LRAIPNLSVIR 492 (663)
T ss_pred hhhHHHHHHHhcCCC-eEEEEecCceecCCCCCCCC---cHHHHHH-hhccCCceeEe
Confidence 678899999999996 88887655444 4899863 5666654 454 3777665
No 418
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=38.59 E-value=33 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=27.5
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-|+||.+|.+ .-.++.|+.|++||+|+.|-+
T Consensus 257 ~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 257 FIFAEDDGLI-EFMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred EEEcCCCeEE-EEecCCCCEeCCCCEEEEEEC
Confidence 4999999976 578999999999999999854
No 419
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=38.44 E-value=43 Score=40.12 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=31.9
Q ss_pred ecceeeeeecCCCEEEEEE------------------------eecCCCcccCCCeEEEEe
Q psy2375 890 SEKVSMEIPSSHNGVVREI------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 890 t~K~~~~I~Ap~~G~v~~i------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
.-+...+|.||.+|.|..| +++.||.|+.|++|++|-
T Consensus 409 ~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 409 AGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred CCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 3466788999999998876 788999999999999985
No 420
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=38.43 E-value=2.7e+02 Score=34.22 Aligned_cols=119 Identities=9% Similarity=0.015 Sum_probs=63.5
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|.+++.+ |. |||... +..-++ .++.+ |+.-+.--+..+-..+.|-++|.|...+...+.+ .+|
T Consensus 40 ~~i~~-~hE~~A~~~--Ad--gyar~t-g~~gv~~~t~GP-G~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q 110 (586)
T PRK06276 40 IHILT-RHEQAAAHA--AD--GYARAS-GKVGVCVATSGP-GATNLVTGIATAYADSSPVIALTGQVPTKLIGND--AFQ 110 (586)
T ss_pred cEEEe-ccHHHHHHH--HH--HHHHHh-CCCEEEEECCCc-cHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCC--CCc
Confidence 66665 799987655 54 466542 122232 33333 2222222123333345565556555554434332 366
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
.+....+++.+=.. .+.-.++.++...++.|++.... +..|||+.++..
T Consensus 111 ~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 111 EIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred cccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 66666777776543 33345567777788888765322 224699988753
No 421
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=38.34 E-value=2.2e+02 Score=34.85 Aligned_cols=122 Identities=12% Similarity=-0.007 Sum_probs=65.2
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEe-ehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTF-YSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~-ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++.+ -.|+++..+ |.| ||..- +...+++. +.+ |+.-+.-=+..+-..+.|-+.|.|...+-..+..-.++
T Consensus 48 i~~i~~-rhE~~A~~m--Adg--yar~t-g~~gv~~~t~GP-G~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~ 120 (569)
T PRK09259 48 IRYIGF-RHEQSAGNA--AAA--AGFLT-QKPGVCLTVSAP-GFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDY 120 (569)
T ss_pred CCEEee-CCHHHHHHH--HHH--HHHHh-CCCEEEEEcCCc-cHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCc
Confidence 377766 899987654 555 55432 13344433 333 22222222333434456655555543322111111236
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
|......+++.+=. -.+...++.++...++.|++.. .++..|||+-++..
T Consensus 121 q~~d~~~~~~~~tk-~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 121 EELDQLNAAKPFCK-AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred cccchhhhhhhhee-eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 76666777877654 3455567788888787777653 22323499988743
No 422
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=38.31 E-value=6e+02 Score=28.49 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=21.1
Q ss_pred HHHhcCCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 648 VLASTIPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 648 ~l~r~iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
+++....-.......+..|+..+++.|+++
T Consensus 146 a~A~g~g~va~~~~~~~~eL~~ai~~Al~~ 175 (287)
T TIGR02177 146 AIALGYTFVARGFSGDVAHLKEIIKEAINH 175 (287)
T ss_pred HHhCCCCeEEEEecCCHHHHHHHHHHHHhC
Confidence 444444333334469999999999999987
No 423
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=38.16 E-value=3e+02 Score=28.13 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=33.5
Q ss_pred cccHHHHH-HHHHcCCCeEEEEEecCC-CcccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 235 PESISEIS-MAAREKLDNLIMIVNCNL-QRLDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 235 g~~~eAl~-~A~~~~L~nli~vvn~N~-~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
-..++++. ..+..+++ +.+++.+.. ...+|++- ...+....|+.. ||.|+.-
T Consensus 90 ~r~~~~~~~~~~~~~~~-v~v~~~~g~~~~~~G~tH----~s~~d~~~~~~iPg~~v~~P 144 (178)
T PF02779_consen 90 IRAFDQIRNDMAYGQLP-VPVGTRAGLGYGGDGGTH----HSIEDEAILRSIPGMKVVVP 144 (178)
T ss_dssp HHHHHHHHHHHHHHTS--EEEEEEESGGGSTTGTTT----SSSSHHHHHHTSTTEEEEE-
T ss_pred hhhhhhhhhhhhcccce-ecceeecCcccccccccc----cccccccccccccccccccC
Confidence 34567776 67788876 556666654 55555543 345678889987 9888764
No 424
>KOG0368|consensus
Probab=38.16 E-value=33 Score=45.42 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 876 GDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 876 Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|-.+.-|-..|.+|.+.--..++||.+|++.+.+|+.|+-|.+||+-|+||.
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEv 718 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEV 718 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeeheh
Confidence 3346678888888877777789999999999999999999999999999873
No 425
>COG3608 Predicted deacylase [General function prediction only]
Probab=38.14 E-value=45 Score=37.90 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=30.6
Q ss_pred EEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 887 VVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 887 ~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+++. .--+.||..|.| +.+++.||.|++||+|+.|-+
T Consensus 251 ~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 251 ALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred ecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEec
Confidence 44444 334999999965 899999999999999999854
No 426
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.54 E-value=2.8e+02 Score=33.91 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=65.0
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|++++.+ |.| ||..- +...+++ ++.+ |..-+.--+..+-..+.|-+.|.|...+...+.++ +|
T Consensus 44 ~~v~~-rhE~~A~~m--Adg--yar~t-g~~gv~~~t~Gp-G~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~--~q 114 (572)
T PRK08979 44 EHILV-RHEQAAVHM--ADG--YARAT-GKVGVVLVTSGP-GATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDA--FQ 114 (572)
T ss_pred eEEEe-CcHHHHHHH--HHH--HHHHh-CCCeEEEECCCc-hHhHHHHHHHHHhhcCCCEEEEecCCCccccCCCC--Cc
Confidence 67766 899987655 554 77542 2444443 3333 22222221233333455655555554443333333 56
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
......+++.+=.. .+...++.++..+++.|++.... +..|||+.++..
T Consensus 115 ~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 115 ECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred ccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 56666777776442 34455677788888888864322 334599988754
No 427
>PRK04350 thymidine phosphorylase; Provisional
Probab=37.54 E-value=45 Score=39.94 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=31.8
Q ss_pred EecceeeeeecCCCEEEEEE------------------------eecCCCcccCCCeEEEEe
Q psy2375 889 ESEKVSMEIPSSHNGVVREI------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 889 Et~K~~~~I~Ap~~G~v~~i------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
..-+...+|.||.+|.|..| +++.||.|+.|++|++|-
T Consensus 400 ~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 400 PLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred CCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 34466778888888888876 788999999999999984
No 428
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=37.44 E-value=2.1e+02 Score=34.79 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=63.7
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ -.|.+++.+ |. |||..- +...++ .++.+ |..-+.-=+..+-..+.|-+.|.|...+...+.+ .+|
T Consensus 41 ~~i~~-~hE~~A~~~--Ad--gyar~t-g~~gv~~~t~Gp-G~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q 111 (558)
T TIGR00118 41 EHILV-RHEQGAAHA--AD--GYARAS-GKVGVVLVTSGP-GATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSD--AFQ 111 (558)
T ss_pred eEEEe-CcHHHHHHH--HH--HHHHHh-CCCEEEEECCCC-cHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC--CCc
Confidence 77765 889986654 44 577543 233333 34433 2222222123332334555555554443333333 355
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
......+++.+=. -.+...++.++..+++.|++.... +..||||.++..
T Consensus 112 ~~d~~~~~~~~tk-~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 112 EADILGITMPITK-HSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred ccChhhhhcCccc-eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 5656667776544 334446778888888888864322 234699988754
No 429
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=36.06 E-value=1.1e+02 Score=30.10 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=41.8
Q ss_pred hHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHH
Q psy2375 736 ILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQV 814 (929)
Q Consensus 736 ~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i 814 (929)
....+- +++.|++. |++++++++..+ ++. ...+..+......+. -.++.+++.... +-|++.-.|..+++.++
T Consensus 16 t~~l~~~~~~~l~~~-g~e~~~i~l~~~-~~p--~~~~~~~~~~~~~d~-~~~~~~~l~~aD-~iI~~sP~y~~~~s~~l 89 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEA-GAEVEVIDLADY-PLP--CCDGDFECPCYIPDD-VQELYDKLKEAD-GIIFASPVYNGSVSGQL 89 (152)
T ss_dssp HHHHHHHHHHHHHHT-TEEEEEEECTTS-HCH--HHHHHHHHTGCTSHH-HHHHHHHHHHSS-EEEEEEEEBTTBE-HHH
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEecccc-chh--hcccccccccCCcHH-HHHHHhceecCC-eEEEeecEEcCcCChhh
Confidence 334444 77788777 999999999887 443 111112112222222 234445555444 66677667877666555
Q ss_pred Hhh
Q psy2375 815 RAF 817 (929)
Q Consensus 815 ~~~ 817 (929)
..+
T Consensus 90 K~~ 92 (152)
T PF03358_consen 90 KNF 92 (152)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 430
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=35.61 E-value=1.4e+02 Score=36.78 Aligned_cols=121 Identities=9% Similarity=0.009 Sum_probs=61.8
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ -.|++++.+ |. |||... +...+++ ++.+ |..-+.--+..+-.-+.|-+.|.|...+...+.+. +
T Consensus 43 i~~i~~-rhE~~A~~~--Ad--gyar~t-g~~gv~~~t~GP-G~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~--~ 113 (597)
T PRK08273 43 PEFVQA-RHEEMAAFM--AV--AHAKFT-GEVGVCLATSGP-GAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGHY--Q 113 (597)
T ss_pred CeEEEe-ccHHHHHHH--HH--HHHHHh-CCCEEEEECCCc-cHHHHHHHHHHHHhcCCCEEEEecCCchhhcCCCC--C
Confidence 367765 889986654 44 477542 2444443 3332 22222211233323345555555544433344444 4
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
|......+++.+=..-.+...++.++...++.|++....+..|||+.++..
T Consensus 114 q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 114 QEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred CccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 445555677665311244555666677677666654322224699988754
No 431
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=35.51 E-value=49 Score=39.69 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=31.8
Q ss_pred ecceeeeeecCCCEEEEEE------------------------eecCCCcccCCCeEEEEe
Q psy2375 890 SEKVSMEIPSSHNGVVREI------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 890 t~K~~~~I~Ap~~G~v~~i------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
.-+...+|.||.+|.|..| +++.||.|+.|++|++|-
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 3566788999999999877 788999999999999985
No 432
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.30 E-value=2.4e+02 Score=34.46 Aligned_cols=119 Identities=10% Similarity=0.003 Sum_probs=62.8
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ -.|+++..+ |. |||... +...+++ +..+ |..-+.--+..+-..+.|-++|.|.......+.+ .+|
T Consensus 44 ~~v~~-~hE~~A~~m--Ad--gyar~t-g~~gv~~~t~Gp-G~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~--~~q 114 (574)
T PRK06882 44 EHVLV-RHEQAAVHM--AD--GYARST-GKVGCVLVTSGP-GATNAITGIATAYTDSVPLVILSGQVPSNLIGTD--AFQ 114 (574)
T ss_pred eEEEe-ccHHHHHHH--HH--HHHHhh-CCCeEEEECCCc-cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--ccc
Confidence 67765 899987654 54 477542 1333332 3332 2222222123333345565555444443333322 366
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
.+....+++.+=. -.+...++.++..+++.|++.. .++..|||+-++..
T Consensus 115 ~~d~~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 115 ECDMLGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred ccchhhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 6666677776543 3445566677777777777642 22334599888754
No 433
>PLN02470 acetolactate synthase
Probab=35.11 E-value=2.4e+02 Score=34.56 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=65.1
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++.+ -.|++++.+ |.| ||..- +..-++ .++.+ |..-+.--+..+-..+.|-++|.|...+...+.+. +
T Consensus 52 i~~i~~-rhE~~A~~~--Adg--yar~t-g~~gv~~~t~GP-G~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~--~ 122 (585)
T PLN02470 52 IRNVLC-RHEQGEVFA--AEG--YAKAS-GKVGVCIATSGP-GATNLVTGLADALLDSVPLVAITGQVPRRMIGTDA--F 122 (585)
T ss_pred ceEEEe-ccHHHHHHH--HHH--HHHHh-CCCEEEEECCCc-cHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCCc--C
Confidence 367766 889987654 544 66532 233343 34333 22222222333333455655555544433333333 5
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccC-CCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g-~~~~v~~rl~~~ 692 (929)
|......+++.+=. -.+...++.++..+++.|++.... +..||||-++..
T Consensus 123 q~~d~~~l~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 123 QETPIVEVTRSITK-HNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred cccchhhhhhhheE-EEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 55555667766543 234456788888888888875332 224599988854
No 434
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=34.90 E-value=53 Score=46.46 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.9
Q ss_pred eeeeeecCCeecCCCeEEEEE
Q psy2375 869 STVMVKIGDTIKIDQSLLVVE 889 (929)
Q Consensus 869 ~~~~vk~Gd~V~~Gd~l~~iE 889 (929)
...+|+.|+.|++||+|++-.
T Consensus 2422 a~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2422 AKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred cEEEecCCCEecCCCEEEEEc
Confidence 467899999999999998764
No 435
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=34.75 E-value=4.2e+02 Score=32.43 Aligned_cols=121 Identities=10% Similarity=0.047 Sum_probs=70.9
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeec---
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTIN--- 635 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g--- 635 (929)
.|.+++..+ =.++|+.-+.+++|.+... +-.|++.+-. .| .+-+.+ +|.+..|+.+.++++.-.+++..-
T Consensus 397 ~~~~~~~~~--~~G~mG~~lpaAiGa~la~-p~r~vv~i~GDGsf-~m~~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~ 471 (574)
T PRK09124 397 GKRRLLGSF--NHGSMANAMPQALGAQAAH-PGRQVVALSGDGGF-SMLMGD-FLSLVQLKLPVKIVVFNNSVLGFVAME 471 (574)
T ss_pred CCCeEEecC--CcccccchHHHHHHHHHhC-CCCeEEEEecCcHH-hccHHH-HHHHHHhCCCeEEEEEeCCccccHHHH
Confidence 457777542 2455665566777776553 3456665555 45 233445 477778888877777777654321
Q ss_pred --CCCC--CCCC--hhhHH-HHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 636 --GEGL--QHED--GHSHV-LASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 636 --~dG~--tHq~--~ed~~-l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
..+. ...+ .-|.+ ++.+. |+..+.-.+..|+...++.+++. ++ ++++.+..
T Consensus 472 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~---~~-p~lIev~i 529 (574)
T PRK09124 472 MKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAH---DG-PALVDVVT 529 (574)
T ss_pred HHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhC---CC-CEEEEEEe
Confidence 1111 0011 11332 34444 67778889999999999999876 22 36666544
No 436
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=34.69 E-value=38 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred cCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 899 SSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 899 Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-|..|+ .+.++.||.|+.||+|++|=
T Consensus 29 D~~vGi--~l~~k~Gd~V~~Gd~l~~i~ 54 (75)
T PF07831_consen 29 DPAVGI--ELHKKVGDRVEKGDPLATIY 54 (75)
T ss_dssp -TT-EE--EESS-TTSEEBTTSEEEEEE
T ss_pred CcCcCe--EecCcCcCEECCCCeEEEEE
Confidence 356674 68899999999999999984
No 437
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=34.64 E-value=2.3e+02 Score=35.50 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHcCCCeEEEEEe--cCCCcccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVN--CNLQRLDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn--~N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
..++++.+++..+++ +++|.- .....-|||+- +.++++. .+|+. |+.|+.-
T Consensus 434 r~~~~ir~~a~~~lp-V~~v~th~g~~~G~dG~TH---q~iedia-~lr~iPn~~v~~P 487 (653)
T TIGR00232 434 YARPAIRLAALMKLP-VIYVYTHDSIGVGEDGPTH---QPIEQLA-SLRAIPNLSVWRP 487 (653)
T ss_pred HHHHHHHHHHhcCCC-EEEEEeCCccCCCCCCccc---CCHHHHH-HHhcCCCCEEEee
Confidence 678899999999985 888884 44555567664 2344443 56765 7777663
No 438
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=34.27 E-value=53 Score=38.84 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=29.9
Q ss_pred cceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 891 EKVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 891 ~K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
-+-..+|.||.+|.|..+ +++.||.|+.|++|++|-
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 355777888888888776 788999999999999984
No 439
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=34.09 E-value=29 Score=40.42 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=25.9
Q ss_pred eeeeecCCCEEEEEE-------eecCCCcccCCCeEEE
Q psy2375 894 SMEIPSSHNGVVREI-------KVKVGDKISKDSQILI 924 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i-------~~~~G~~V~~G~~L~~ 924 (929)
-..|.|..+|+|.++ .|++||.|.+||+|..
T Consensus 186 P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 186 PRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 347899999999997 4667899999999974
No 440
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=33.81 E-value=1.7e+02 Score=35.66 Aligned_cols=120 Identities=9% Similarity=-0.052 Sum_probs=61.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceE-EEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIP-FFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iP-f~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ ..|+++..+ |. |||... +... ++.++.+ |..-+.--+-.+-..+.|-++|.|....-.. +.|. ||
T Consensus 49 ~~v~~-~hE~~A~~a--Ad--gyar~t-g~~~v~~vt~Gp-G~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~~-~~~~-~q 119 (568)
T PRK07449 49 RLHTH-FDERSAGFL--AL--GLAKAS-KRPVAVIVTSGT-AVANLYPAVIEAGLTGVPLIVLTADRPPELR-DCGA-NQ 119 (568)
T ss_pred EEEee-cCcccHHHH--HH--HHHHhh-CCCEEEEECCcc-HHHhhhHHHHHHhhcCCcEEEEECCCCHHHh-cCCC-Cc
Confidence 66665 889987654 44 476543 2333 3445443 2222221122222334555555444332222 2333 67
Q ss_pred ChhhHHHHhcCCCcEEEccCCHH-----HHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAH-----EVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~-----E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
.+....+++.+-...+-.|.... .+..+++.++..+.++..||||-++..
T Consensus 120 ~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 120 AIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred eecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 77778888877655555565521 134455654443333444599988853
No 441
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=33.25 E-value=35 Score=31.02 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.5
Q ss_pred cceeeeeeecCCeecCCCeEEEEEe
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVES 890 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt 890 (929)
+--++|+++.|+.|++|++|++++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 3345799999999999999999985
No 442
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=33.07 E-value=6.5e+02 Score=27.14 Aligned_cols=114 Identities=9% Similarity=-0.055 Sum_probs=60.1
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhcc-C---CCceEEEEeehhhHHH--hHHHHHHHhhhhcCCcEEEEeecCCeee
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTS-N---CIMIPFFTFYSMFGLQ--RIGDLAWLAGDIRARGFLIGGTSGRTTI 634 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~-G---~~~iPf~~~ys~F~~q--R~~d~i~~~~~~~~~~v~i~~t~~~~~~ 634 (929)
.|.+.++..+.-.+.|+.-+.+++|.+.. | .+-+|++++-.--+++ =..+ ++.+..++.+-++++.-.+++..
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~-l~ta~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGA-LSHSLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHH-HHHHHHcCCCeEEEEECCccccC
Confidence 34566666665567787656666665433 0 1345666554533222 1222 24444566665555544443321
Q ss_pred cCCCCCCC------------------ChhhH-HHHhc--CCCcEEEccCCHHHHHHHHHHHHh-h
Q psy2375 635 NGEGLQHE------------------DGHSH-VLAST--IPNCIPYDPTFAHEVAIIIHHGLH-C 677 (929)
Q Consensus 635 g~dG~tHq------------------~~ed~-~l~r~--iPnl~v~~Pada~E~~~~l~~al~-~ 677 (929)
- +.|++ ..-|+ .++++ ++......+.+..|+..+++.+++ .
T Consensus 130 ~--~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~ 192 (237)
T cd02018 130 T--GGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRT 192 (237)
T ss_pred C--CCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcC
Confidence 1 11111 00122 23333 444454569999999999999997 5
No 443
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=33.01 E-value=62 Score=31.56 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=31.6
Q ss_pred CcEEEEecccchhHHHHHhhccCCCcEEEEec-CcccccCChhhHHhhhcceeheeccc
Q psy2375 798 GPIIVATDYMRLFAEQVRAFIPKGRIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKII 855 (929)
Q Consensus 798 ~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~ 855 (929)
.-||+++++.. .+.+.++....+...++ |=++.+|+.++..+.|.-..+.|..+
T Consensus 71 D~vitm~~~~~----~~~~~~p~~~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~I~~~ 125 (129)
T TIGR02691 71 DLVVTLCGDAR----DKCPATPPHVKREHWGLDDPARAEGTEEEKWAVFRRVRDEIKER 125 (129)
T ss_pred CEEEEeCchhc----cCCCccCCCCeEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46888876521 22233332112234577 55888999888888777666555443
No 444
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=32.96 E-value=56 Score=38.70 Aligned_cols=36 Identities=14% Similarity=0.391 Sum_probs=30.6
Q ss_pred cceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 891 EKVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 891 ~K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
-+-..+|+|+.+|.|..| +++.|+.|++|++|++|-
T Consensus 337 ~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 337 APHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 466778888888888766 788999999999999984
No 445
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=32.87 E-value=59 Score=38.15 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=31.1
Q ss_pred ecceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 890 SEKVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 890 t~K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
.-+-..+|.||.+|.|..+ +++.|+.|+.|++|++|-
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 4566778888888888876 788899999999999984
No 446
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=32.36 E-value=4.1e+02 Score=27.05 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHh--HHHHHHHhhhhcCCcEEEEeecCCeeecCCC---------CCC
Q psy2375 573 AGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQR--IGDLAWLAGDIRARGFLIGGTSGRTTINGEG---------LQH 641 (929)
Q Consensus 573 ~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR--~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG---------~tH 641 (929)
.+.|+.-+++++|.+... +-.+++.+..-=+|+- ..+ ++.+..++.+.++++.-.+++..-+.- .+.
T Consensus 50 ~g~mG~gl~~AiGa~la~-p~~~Vv~i~GDG~f~~~g~~e-L~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~ 127 (178)
T cd02008 50 CTCMGASIGVAIGMAKAS-EDKKVVAVIGDSTFFHSGILG-LINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEP 127 (178)
T ss_pred cccCccHHHHHhhHHhhC-CCCCEEEEecChHHhhccHHH-HHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCC
Confidence 566665456666665543 3455655555322332 233 355566677666666555544321100 011
Q ss_pred CChhhHH-HHhc--CCCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 642 EDGHSHV-LAST--IPNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 642 q~~ed~~-l~r~--iPnl~v~~Pada~E~~~~l~~al~~ 677 (929)
....|+. ++++ ++...|-.|.+-.++...++.+++.
T Consensus 128 ~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~ 166 (178)
T cd02008 128 TTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAV 166 (178)
T ss_pred CCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhC
Confidence 1112232 3333 4445555666666666888888875
No 447
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=31.95 E-value=5.7e+02 Score=26.12 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=66.5
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeee----
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTI---- 634 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~---- 634 (929)
.|.+++..+ -.++|+.-+++++|.+... +-.|++++.. .|. +-..+ +|.+..++.+.++++.-.++...
T Consensus 39 ~~~~~~~~~--~~g~mG~~lp~aiGa~la~-~~~~vv~i~GDG~f~-~~~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~ 113 (186)
T cd02015 39 KPRSWLTSG--GLGTMGFGLPAAIGAKVAR-PDKTVICIDGDGSFQ-MNIQE-LATAAQYNLPVKIVILNNGSLGMVRQW 113 (186)
T ss_pred CCCeEEeCC--CccchhchHHHHHHHHHhC-CCCeEEEEEcccHHh-ccHHH-HHHHHHhCCCeEEEEEECCccHHHHHH
Confidence 467787543 2345554456666666543 3345555444 453 33455 57788888876666666654331
Q ss_pred -----cCCCC-CCC-ChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 635 -----NGEGL-QHE-DGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 635 -----g~dG~-tHq-~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
++... ++. ..-|. .++++. |+..+.-.+..|+..+++.++.. ++ ++++.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~---~~-p~liev~~ 173 (186)
T cd02015 114 QELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALAS---DG-PVLLDVLV 173 (186)
T ss_pred HHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhC---CC-CEEEEEEe
Confidence 11111 111 12233 344444 55566667789999999999875 23 35555543
No 448
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=31.82 E-value=68 Score=39.80 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=47.4
Q ss_pred cCChhhHHhhhcceeheeccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecce--------eeeeecCCCEEEE
Q psy2375 835 SDTRKKLRDFFENIIHMKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKV--------SMEIPSSHNGVVR 906 (929)
Q Consensus 835 sgs~~~L~~~fgldae~Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~--------~~~I~Ap~~G~v~ 906 (929)
+++--+++-|.|+|.-.+ +|+--+.+++.||+|++||+|+++.-++. ..-|-... ....
T Consensus 540 t~~G~eiLiHiGiDTV~L------------~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~-~~~~ 606 (627)
T PRK09824 540 SDDGVEVLIHVGIDTVKL------------DGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNS-DDYT 606 (627)
T ss_pred eCCCcEEEEEechhhhhc------------CCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEcc-cccc
Confidence 444455555666554331 35677899999999999999999875432 11122211 1122
Q ss_pred EEeecCCCcccCCCeEEEE
Q psy2375 907 EIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 907 ~i~~~~G~~V~~G~~L~~i 925 (929)
.+....+..|+.|+++..+
T Consensus 607 ~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 607 DVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred ceeeccCCcccCCCeEEEe
Confidence 3333455678999988765
No 449
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=31.78 E-value=3.5e+02 Score=31.81 Aligned_cols=119 Identities=6% Similarity=-0.127 Sum_probs=55.7
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++.+ ..|+++..+ |- |||..- +..-++ .++.+= ..-+.-=+..+-..+.|-+.|.|.......+.+. +|
T Consensus 40 ~~v~~-~hE~~A~~m--Ad--gyar~t-g~~gv~~~t~GpG-~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q 110 (432)
T TIGR00173 40 RVHVH-IDERSAGFF--AL--GLAKAS-GRPVAVVCTSGTA-VANLLPAVIEASYSGVPLIVLTADRPPELRGCGA--NQ 110 (432)
T ss_pred EEEEe-cCCccHHHH--HH--HHHhcc-CCCEEEEECCcch-HhhhhHHHHHhcccCCcEEEEeCCCCHHHhCCCC--Cc
Confidence 66654 899986654 44 577653 233333 333321 1111111222222345545554443322233222 55
Q ss_pred ChhhHHHHhcCCCc--EEEccCCHH---HHHHHHHHHHhhccC-CCceEEEEEec
Q psy2375 643 DGHSHVLASTIPNC--IPYDPTFAH---EVAIIIHHGLHCMIS-NQEDVFYYITV 691 (929)
Q Consensus 643 ~~ed~~l~r~iPnl--~v~~Pada~---E~~~~l~~al~~~~g-~~~~v~~rl~~ 691 (929)
.+....+++.+=.. .|-.|.+.. .+..+++.|++.... +..|||+-++.
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 111 TIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred ccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 56666777765443 334555411 144455555543222 22359988874
No 450
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=31.61 E-value=4.2e+02 Score=30.54 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHhCCCCCeEEE
Q psy2375 364 DLRKIYSAFKMAQKNKDKPTVLL 386 (929)
Q Consensus 364 D~~~v~~a~~~a~~~~~~P~vI~ 386 (929)
|+.+++.+++.|.+. ++|++|+
T Consensus 181 d~~e~~~~l~~a~~~-~~P~~i~ 202 (355)
T PTZ00182 181 DPEDAKGLLKAAIRD-PNPVVFF 202 (355)
T ss_pred CHHHHHHHHHHHHhC-CCcEEEE
Confidence 566788888888876 6898876
No 451
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=31.55 E-value=45 Score=38.86 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=27.5
Q ss_pred cceeeeeecCCCEEEEEE-------eecCCCcccCCCeEEE
Q psy2375 891 EKVSMEIPSSHNGVVREI-------KVKVGDKISKDSQILI 924 (929)
Q Consensus 891 ~K~~~~I~Ap~~G~v~~i-------~~~~G~~V~~G~~L~~ 924 (929)
++.-..|.|..+|+|.++ .|++||.|.+||+|..
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 344567899999999997 5677899999999974
No 452
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=31.17 E-value=63 Score=38.23 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=16.3
Q ss_pred eecCCCcccCCCeEEEEe
Q psy2375 909 KVKVGDKISKDSQILILE 926 (929)
Q Consensus 909 ~~~~G~~V~~G~~L~~i~ 926 (929)
+++.||.|+.|++|++|-
T Consensus 381 ~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 381 RKKVGDSVKKGESLATIY 398 (434)
T ss_pred ccCCcCEeCCCCeEEEEe
Confidence 788999999999999874
No 453
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=31.16 E-value=5.6e+02 Score=26.58 Aligned_cols=110 Identities=13% Similarity=-0.025 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC--------CCC-CC-
Q psy2375 574 GGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING--------EGL-QH- 641 (929)
Q Consensus 574 ~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~--------dG~-tH- 641 (929)
++|+.-+++++|.++.. +-+|++.+.. .|..+-..+ +|.+..++.+-++++.-.+++..-. .|. ++
T Consensus 51 g~mG~glpaAiGa~la~-p~r~Vv~i~GDGs~f~m~~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~ 128 (193)
T cd03375 51 TLHGRALAVATGVKLAN-PDLTVIVVSGDGDLAAIGGNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKT 128 (193)
T ss_pred hhhccHHHHHHHHHHhC-CCCeEEEEeccchHhhccHHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccC
Confidence 55665556666666543 4556665554 321122233 4777777777666666555443211 010 00
Q ss_pred --CC----hhhH-HHHhcC--CCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 642 --ED----GHSH-VLASTI--PNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 642 --q~----~ed~-~l~r~i--Pnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
+. .-|+ .+++.. +....+.+.+..|+...++.+++. ++| .++.+
T Consensus 129 ~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~~---~gp-~vIev 181 (193)
T cd03375 129 TPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH---KGF-SFVEV 181 (193)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHhc---CCC-EEEEE
Confidence 00 0122 244443 333235789999999999999976 333 55544
No 454
>PRK06163 hypothetical protein; Provisional
Probab=31.08 E-value=6.5e+02 Score=26.53 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=65.2
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhh-cCCcEEEEeecCCeeecCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDI-RARGFLIGGTSGRTTINGE 637 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~-~~~~v~i~~t~~~~~~g~d 637 (929)
.|++++. .++|+.-+.+++|.+... +-.+++++.. .| .+-+.++ +.++.+ ..+-++++.-.+++..- .
T Consensus 49 ~~~~~~~-----~GsMG~glpaAiGaalA~-p~r~Vv~i~GDG~f-~m~~~eL-~Ta~~~~~lpi~ivV~NN~~yg~~-~ 119 (202)
T PRK06163 49 RPQNFYM-----LGSMGLAFPIALGVALAQ-PKRRVIALEGDGSL-LMQLGAL-GTIAALAPKNLTIIVMDNGVYQIT-G 119 (202)
T ss_pred CCCCeEe-----ecccccHHHHHHHHHHhC-CCCeEEEEEcchHH-HHHHHHH-HHHHHhcCCCeEEEEEcCCchhhc-C
Confidence 3556663 567776667777776554 4456666655 45 3345665 444445 34555565555544421 1
Q ss_pred CCCCC--ChhhH-HHHhcCCCcE-EEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 638 GLQHE--DGHSH-VLASTIPNCI-PYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 638 G~tHq--~~ed~-~l~r~iPnl~-v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
+..+. ..-|+ .++++. ++. .+.-.+..|+..+++.+++. ++| .++.+..
T Consensus 120 ~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~~---~~p-~lIeV~i 172 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALSG---PGP-SFIAVRI 172 (202)
T ss_pred CccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhC---CCC-EEEEEEe
Confidence 11111 11233 344444 554 55677999999999999876 333 5555543
No 455
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=30.89 E-value=3.2e+02 Score=33.76 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=32.5
Q ss_pred ccHHHH-HHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 236 ESISEI-SMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 236 ~~~eAl-~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
.+++-| +.++..+|+ ++|+++.-+..-|||+-- -+.++ +.|+.. |+.|+.
T Consensus 357 ra~dQi~~d~a~~~lp-v~~~~~~~g~~~dG~TH~---~~~Di-a~lr~iPnl~V~~ 408 (581)
T PRK12315 357 RAYDQLSHDLAINNNP-AVMIVFGGSISGNDVTHL---GIFDI-PMISNIPNLVYLA 408 (581)
T ss_pred HHHHHHHHHHHhcCCC-EEEEEECCcccCCCcccc---ccHHH-HHHhcCCCCEEEe
Confidence 455644 447888986 899988655554666642 23444 677775 888765
No 456
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=30.56 E-value=3.7e+02 Score=33.07 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=38.0
Q ss_pred cEEEEEEcCCccCCcccHHHHHH-HHHcCCCeEEEEEecCCC-cccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEISM-AAREKLDNLIMIVNCNLQ-RLDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~-A~~~~L~nli~vvn~N~~-~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
.++|+.+ -..+-. .+++.+.+ ++..+++ ++++...-+. .-|||+-- .+.++ ..|+.. |+.|+.-
T Consensus 345 ~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~p-v~~v~~~~G~~g~dG~tH~---~~edi-a~lr~iP~l~V~~P 411 (580)
T PRK05444 345 LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLP-VTFAIDRAGLVGADGPTHQ---GAFDL-SYLRCIPNMVIMAP 411 (580)
T ss_pred CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCC-EEEEEeCCCcCCCCCcccc---ccHHH-HHHhcCCCCEEEee
Confidence 3455544 455554 77886644 8889986 7777764433 23454432 23333 567775 8888764
No 457
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=30.03 E-value=54 Score=34.50 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=43.9
Q ss_pred cCCccccceeeeee-ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEE
Q psy2375 860 IGDLSEVEVSTVMV-KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQIL 923 (929)
Q Consensus 860 LG~i~eg~V~~~~v-k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~ 923 (929)
+|.+.-+.|.-+.. +.|+.|++||.+.-++- =.++.+--|.+- +.+..+++|+.|..||.|+
T Consensus 139 Vga~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 139 VGALLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred eccceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCEEEeeeEEe
Confidence 34445556655544 68999999999998875 334444444333 3388999999999999987
No 458
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=29.62 E-value=6e+02 Score=30.86 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=71.2
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCC-ceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeec--
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCI-MIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTIN-- 635 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~-~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g-- 635 (929)
.|.+++..+ -.++||.-+.+++|.+... + -+|++++-. .| ++-..++ |.+..++.+-++++.-.+++..-
T Consensus 385 ~~~~~~~~~--~~g~mG~glpaaiGa~la~-p~~~~Vv~i~GDGsf-~~~~~eL-~Ta~~~~lpi~ivV~NN~~~g~i~~ 459 (549)
T PRK06457 385 GEQTFIFSA--WLGSMGIGVPGSVGASFAV-ENKRQVISFVGDGGF-TMTMMEL-ITAKKYDLPVKIIIYNNSKLGMIKF 459 (549)
T ss_pred CCCeEEeCC--CcchhhhhHHHHHHHHhcC-CCCCeEEEEEcccHH-hhhHHHH-HHHHHHCCCeEEEEEECCccchHHH
Confidence 356666542 3567776667788877653 3 356665555 55 3345554 78888888777777666655410
Q ss_pred ---CCCCCC--CC--hhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 636 ---GEGLQH--ED--GHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 636 ---~dG~tH--q~--~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
..|..+ .+ .-|. .++.+. |+..+...+..|++..++.++.. ++| ..+.+-
T Consensus 460 ~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~---~~p-~lIeV~ 517 (549)
T PRK06457 460 EQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNT---KGP-AVLDAI 517 (549)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhC---CCC-EEEEEE
Confidence 001111 11 1123 344444 67777888999999999999876 333 555544
No 459
>PRK05899 transketolase; Reviewed
Probab=29.18 E-value=3.2e+02 Score=33.99 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHcCCCeEEEEEecCCCcc--cccccccccchHHHH--HHHhhC-CceEEE
Q psy2375 235 PESISEISMAAREKLDNLIMIVNCNLQRL--DGPVRGNSKIIQELE--AHFYGV-GWNVIK 290 (929)
Q Consensus 235 g~~~eAl~~A~~~~L~nli~vvn~N~~~i--dg~v~~~~~~~~~l~--~~f~~~-Gw~vi~ 290 (929)
.-.++++.+++..+++ +++|....+.+. +|++- |.++ ..|+.. |+.|+.
T Consensus 404 ~r~~~qir~~~~~~~p-v~~v~~~~G~~~g~~G~tH------q~~edia~~r~iP~~~V~~ 457 (624)
T PRK05899 404 DYARNAIRLAALMKLP-VIYVFTHDSIGVGEDGPTH------QPVEQLASLRAIPNLTVIR 457 (624)
T ss_pred HHHHHHHHHHHhcCCC-EEEEEECCCcCcCCCCCCc------ccHHHHHHHHhCCCcEEEe
Confidence 4678899999888875 888877766543 56654 3344 366665 777765
No 460
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=28.97 E-value=3.5e+02 Score=33.02 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=62.0
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ -.|++++.+ |. |||..- +..-++ .++.+ |..-..--+..+-..+.|-++|.|.......+.+. +
T Consensus 46 i~~v~~-~hE~~A~~~--Ad--gyar~t-g~~~v~~~t~Gp-G~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~ 116 (561)
T PRK06048 46 LRHILV-RHEQAAAHA--AD--GYARAT-GKVGVCVATSGP-GATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDA--F 116 (561)
T ss_pred CeEEEe-ccHHHHHHH--HH--HHHHHh-CCCeEEEECCCC-cHHHHHHHHHHHhhcCCCEEEEeccCCccccCCCC--c
Confidence 366765 899987654 44 477542 133333 33333 22222222333333455555554444433333333 4
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|......+++.+=. -.+.-.++.++..+++.|++... ++..|||+.++..
T Consensus 117 q~~d~~~~~~~itk-~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 117 QEADITGITMPITK-HNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred cccchhhhccCcce-EEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 44555566666532 23445667788888888876432 2223599988753
No 461
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=28.63 E-value=54 Score=31.92 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=23.4
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEecc
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEK 892 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K 892 (929)
+|+--+.+++.||+|++||+|+++.-++
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3567789999999999999999886443
No 462
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=28.45 E-value=42 Score=37.17 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=25.6
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES 890 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt 890 (929)
..|.|.++++++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 679999999999999999999999986
No 463
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=28.42 E-value=3.4e+02 Score=33.18 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=62.1
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=+++.+ ..|++++.+ |.| ||... +...++ .++.+ |..-+.-=+..+-.-+.|-++|.|...+...+.+. +
T Consensus 54 i~~i~~-~hE~~A~~~--A~g--yar~t-g~~gv~~~t~GP-G~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~--~ 124 (571)
T PRK07710 54 IPHILT-RHEQGAIHA--AEG--YARIS-GKPGVVIATSGP-GATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDA--F 124 (571)
T ss_pred CcEEEe-CCHHHHHHH--HHH--HHHHh-CCCeEEEECCCc-cHHHHHHHHHHHhhcCCCEEEEeccCCccccCCCC--c
Confidence 477765 899987654 554 66542 233343 33333 12112211223323345555555544443344433 4
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEec
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITV 691 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~ 691 (929)
|......+++.+-.. .+...++.++..+++.|++... ++..|||+-++.
T Consensus 125 q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 125 QEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 445556777766443 3344556667777777776432 222359998875
No 464
>KOG0557|consensus
Probab=28.00 E-value=47 Score=39.13 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=25.9
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
..|.|.+...++||.+++|++|++||++
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETD 78 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETD 78 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEecc
Confidence 4799999999999999999999999975
No 465
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=27.31 E-value=38 Score=37.21 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=26.0
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEE
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILI 924 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~ 924 (929)
-+..++-|...++.|++||.|+.||+|+.
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 45668889999999999999999999986
No 466
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=27.26 E-value=80 Score=39.32 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.0
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEecc
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEK 892 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K 892 (929)
.|+--+.+|+.||+|++||+|+++.-++
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4667889999999999999999987543
No 467
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=26.79 E-value=55 Score=36.80 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=27.1
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecc
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEK 892 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K 892 (929)
-..|+|.++.++.||.|..|++|+.|+.++
T Consensus 51 ~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 51 PAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 467999999999999999999999998653
No 468
>PRK06154 hypothetical protein; Provisional
Probab=26.48 E-value=5.4e+02 Score=31.48 Aligned_cols=110 Identities=13% Similarity=-0.015 Sum_probs=70.0
Q ss_pred hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCC
Q psy2375 560 EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGE 637 (929)
Q Consensus 560 ~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~d 637 (929)
..|++++..+- .++|+.-+.+++|.++.- +-+|++.+.. .|. +-+.| +|.+..++.+.++++.-.+++..-..
T Consensus 419 ~~p~~~~~~~~--~gsmG~glpaaiGa~la~-p~r~Vv~i~GDG~f~-m~~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 419 SRPGSYLGWGK--TTQLGYGLGLAMGAKLAR-PDALVINLWGDAAFG-MTGMD-FETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CCCCeEEccCC--CcccccHHHHHHHHHHhC-CCCcEEEEEcchHHh-ccHHH-HHHHHHhCCCeEEEEEECCccceeeh
Confidence 45788887642 566776667777766653 4466666555 452 23345 58888899988888877775542110
Q ss_pred -----CCCC----CChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHh
Q psy2375 638 -----GLQH----EDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLH 676 (929)
Q Consensus 638 -----G~tH----q~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~ 676 (929)
+..+ ... |. .+..++ ++..+.=.+..|+...++.++.
T Consensus 494 ~~~~~~~~~~~~~~~~-df~~lA~a~-G~~g~~V~~~~el~~al~~a~~ 540 (565)
T PRK06154 494 VMPVSTTKYRATDISG-DYAAIARAL-GGYGERVEDPEMLVPALLRALR 540 (565)
T ss_pred hhhhhcCcccccCCCC-CHHHHHHHC-CCeEEEECCHHHHHHHHHHHHh
Confidence 1111 112 33 355555 6777777889999999999986
No 469
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=26.18 E-value=63 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEec
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESE 891 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~ 891 (929)
.|.--+++++.||.|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 366788999999999999999988643
No 470
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=26.05 E-value=62 Score=39.35 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
..|+|.++++++||.|+.||+|+.++++
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeec
Confidence 5699999999999999999999999864
No 471
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.96 E-value=5.6e+02 Score=25.85 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=24.9
Q ss_pred CcEEEEEEcCCccCCcccHHHHHHHH-HcCCCeEEEEE
Q psy2375 220 NRKIWILCGDGEMDEPESISEISMAA-REKLDNLIMIV 256 (929)
Q Consensus 220 ~~~v~~~~GDGe~~eg~~~eAl~~A~-~~~L~nli~vv 256 (929)
.+-++|..+=| -|.+.-+|.-|. ..+.| +++|+
T Consensus 58 ~~~~v~~~~sG---~gn~~~~l~~a~~~~~~P-vl~i~ 91 (157)
T TIGR03845 58 KKPAILMQSSG---LGNSINALASLNKTYGIP-LPILA 91 (157)
T ss_pred CCcEEEEeCCc---HHHHHHHHHHHHHcCCCC-EEEEE
Confidence 34567777777 346888888888 88887 88887
No 472
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=25.93 E-value=6.9e+02 Score=25.14 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v 291 (929)
...-+|..|...+.+ |++|.-+-...-.+ .+...-.-+..+.|+........+
T Consensus 78 n~~~~l~~A~~~~~P-vl~i~g~~~~~~~~--~~~~q~~~d~~~~~~~~~k~~~~v 130 (172)
T PF02776_consen 78 NALTGLANAYADRIP-VLVITGQRPSAGEG--RGAFQQEIDQQSLFRPVTKWSYRV 130 (172)
T ss_dssp TTHHHHHHHHHTT-E-EEEEEEESSGGGTT--TTSTTSSTHHHHHHGGGSSEEEEE
T ss_pred HHHHHHhhcccceee-EEEEecccchhhhc--ccccccchhhcchhccccchhccc
Confidence 467777788888887 77777665544443 111111125667788887556665
No 473
>KOG0559|consensus
Probab=25.66 E-value=73 Score=36.41 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=26.4
Q ss_pred CccccceeeeeeecCCeecCCCeEEEEEe
Q psy2375 862 DLSEVEVSTVMVKIGDTIKIDQSLLVVES 890 (929)
Q Consensus 862 ~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt 890 (929)
+-..|+|.+.+|+.||+|+.|+.|+.|+.
T Consensus 120 sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 120 SPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred CCCcceeeEEecCCCCcccCCceeEEecC
Confidence 35679999999999999999999999986
No 474
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.18 E-value=5.6e+02 Score=32.34 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=36.1
Q ss_pred EEEEEEcCCccCCcccHHHH-HHHHHcCCCeEEEEEecCCCc-ccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 222 KIWILCGDGEMDEPESISEI-SMAAREKLDNLIMIVNCNLQR-LDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 222 ~v~~~~GDGe~~eg~~~eAl-~~A~~~~L~nli~vvn~N~~~-idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
+.||.+ =..+-. .+++.+ +.++..+|+ ++|+++.-+.. -|||+-- -+.++ ..++.. |+.|+.-
T Consensus 423 kPvv~~-fs~Fl~-RA~DQI~~dval~~lp-Vv~v~~~aG~vg~dG~TH~---~~~Di-a~lr~iPnl~V~~P 488 (677)
T PLN02582 423 KPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC---GAFDV-TYMACLPNMVVMAP 488 (677)
T ss_pred eEEEEe-cHHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcccCCCCccc---ccHHH-HHHhcCCCCEEEee
Confidence 344433 334443 677754 778899986 89998876443 2444431 12333 345664 8887653
No 475
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.90 E-value=5.9e+02 Score=28.40 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=29.4
Q ss_pred hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 644 GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 644 ~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
...++.....+-+....+.+..|+..+++.|++. +++ .++.+
T Consensus 148 ~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gp-s~I~v 189 (279)
T PRK11866 148 PIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGF-SFIDV 189 (279)
T ss_pred HHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCC-EEEEE
Confidence 3344444456666777789999999999999987 344 55443
No 476
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=24.04 E-value=5.2e+02 Score=32.35 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=35.8
Q ss_pred cEEEEEEcCCccCCcccHHHH-HHHHHcCCCeEEEEEecCCCc-ccccccccccchHHHHHHHhhC-CceEEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEI-SMAAREKLDNLIMIVNCNLQR-LDGPVRGNSKIIQELEAHFYGV-GWNVIKV 291 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl-~~A~~~~L~nli~vvn~N~~~-idg~v~~~~~~~~~l~~~f~~~-Gw~vi~v 291 (929)
.+.||.+ =+.+-. .+++.+ +.++..+|+ ++|+++..+.. -|||+-- -+.++ ..++.. |+.|+.-
T Consensus 423 ~rPvv~~-fs~Fl~-RA~DQI~~dva~~~lp-V~~v~~~aG~~g~dG~TH~---~~~Di-a~lr~iPnl~V~~P 489 (641)
T PLN02234 423 LKPFCTI-YSSFMQ-RAYDQVVHDVDLQKLP-VRFAIDRAGLMGADGPTHC---GAFDV-TFMACLPNMIVMAP 489 (641)
T ss_pred CeEEEEe-hHHHHH-HHHHHHHHHHhhcCCC-EEEEEeCCccCCCCCcccc---ccHHH-HHHhcCCCCEEEee
Confidence 3555554 334433 566666 567888986 88998877643 2444321 12232 344554 8877663
No 477
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=23.88 E-value=1.8e+02 Score=31.31 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHh
Q psy2375 742 ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRA 816 (929)
Q Consensus 742 AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~ 816 (929)
+++.|.++ |+.++++|+..+..++.+. . -+| .-..+ .+.+...++.||+.=+|.++++..+..
T Consensus 49 ~~~~~~~~-g~~v~~idl~~lPl~~~d~-~------~~p---~v~~l-~~~v~~ADgvii~TPEYn~sipg~LKN 111 (219)
T TIGR02690 49 AARLLGCE-GRETRIFDPPGLPLPDAAH-A------DHP---KVREL-RQLSEWSEGQVWCSPERHGAITGSQKD 111 (219)
T ss_pred HHHHHhhc-CCEEEEeCcccCCCCCcCc-c------cCH---HHHHH-HHHHHhCCEEEEeCCccccCcCHHHHH
Confidence 67777766 8999999987664444321 0 022 11233 344455546666666898877766644
No 478
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=23.60 E-value=9.4e+02 Score=25.89 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCC-------
Q psy2375 573 AGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED------- 643 (929)
Q Consensus 573 ~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~------- 643 (929)
++.|+.-+.+++|.+... +-+|++++-. .|..+=..+ ++.+..++.+-++++.-.+.+..- |.+++.
T Consensus 61 ~gsmG~GlpaAiGa~~a~-p~r~VV~i~GDG~~~~m~~~e-L~ta~~~~~pv~~vVlNN~~yg~t--g~q~~~~~~~~~~ 136 (235)
T cd03376 61 AAAVASGIEAALKALGRG-KDITVVAFAGDGGTADIGFQA-LSGAAERGHDILYICYDNEAYMNT--GIQRSGSTPYGAW 136 (235)
T ss_pred HHHHHHHHHHHHHHhccC-CCCeEEEEEcCchHHhhHHHH-HHHHHHcCCCeEEEEECCcccccC--CCCCCCCCCCCCE
Confidence 356766555665544332 4567766554 431223344 355666777655565555533311 112211
Q ss_pred ----------------hhhH-HHHhcC--CCcEEEccCCHHHHHHHHHHHHhh
Q psy2375 644 ----------------GHSH-VLASTI--PNCIPYDPTFAHEVAIIIHHGLHC 677 (929)
Q Consensus 644 ----------------~ed~-~l~r~i--Pnl~v~~Pada~E~~~~l~~al~~ 677 (929)
.-|+ .++++. +.+..+...+..|+..+++.+++.
T Consensus 137 ~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~ 189 (235)
T cd03376 137 TTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI 189 (235)
T ss_pred eecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC
Confidence 1123 244443 334456789999999999999986
No 479
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=23.46 E-value=1.8e+02 Score=39.18 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=30.9
Q ss_pred eeeecCCeecCCCeEEEEEe-------cceeeeeecCCCEEEE
Q psy2375 871 VMVKIGDTIKIDQSLLVVES-------EKVSMEIPSSHNGVVR 906 (929)
Q Consensus 871 ~~vk~Gd~V~~Gd~l~~iEt-------~K~~~~I~Ap~~G~v~ 906 (929)
.+|+.|+.|+++|+|+++-+ .|..-.|.|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 68999999999999999976 3566789999999753
No 480
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=21.69 E-value=3.9e+02 Score=24.06 Aligned_cols=34 Identities=21% Similarity=0.075 Sum_probs=28.4
Q ss_pred CcEEEEEeCh----hHHHHH-HHHHHhccCCCceEEEEcc
Q psy2375 726 LKVQLIGSGA----ILREIL-ASKILLQEWDIDSAVWSAT 760 (929)
Q Consensus 726 ~dv~Lia~G~----~v~~al-AAe~L~~~~GI~a~Vvsv~ 760 (929)
.+|+|++.|+ .-..|. |.++|.+. ||..+.+++.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~ 46 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDIL 46 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcC
Confidence 4799999884 567888 99999887 9999999974
No 481
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=21.52 E-value=7.5e+02 Score=27.62 Aligned_cols=109 Identities=12% Similarity=-0.117 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHhccCCCceEEEEeehhhH-HH-hHHHHHHHhhhhcCCcEEEEeecCCeee--cCCCC----------C
Q psy2375 575 GMGSWIAAATSYSTSNCIMIPFFTFYSMFG-LQ-RIGDLAWLAGDIRARGFLIGGTSGRTTI--NGEGL----------Q 640 (929)
Q Consensus 575 ~~~~~iAag~g~A~~G~~~iPf~~~ys~F~-~q-R~~d~i~~~~~~~~~~v~i~~t~~~~~~--g~dG~----------t 640 (929)
.|+.-+++++|.++.. +-++++++-.-=. ++ =..++ +.++.++.+-++++.-.+++.. +...+ +
T Consensus 70 ~mG~alpaAiGaklA~-Pd~~VV~i~GDG~~f~mg~~eL-~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~ 147 (286)
T PRK11867 70 IHGRALAIATGLKLAN-PDLTVIVVTGDGDALAIGGNHF-IHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTT 147 (286)
T ss_pred hhhcHHHHHHHHHHhC-CCCcEEEEeCccHHHhCCHHHH-HHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccc
Confidence 3444445566655543 3455655444210 22 22333 4555566665555555443321 11110 0
Q ss_pred CCC-----hhhHHHHhcCCC--cEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 641 HED-----GHSHVLASTIPN--CIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 641 Hq~-----~ed~~l~r~iPn--l~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
.++ ..-..++..... +......+..|+..+++.+++. +++ +++-+
T Consensus 148 ~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp-~lIev 199 (286)
T PRK11867 148 PYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGF-SFVEI 199 (286)
T ss_pred cCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCC-EEEEE
Confidence 010 112234444433 3344688999999999999987 333 55544
No 482
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.38 E-value=2.3e+02 Score=31.17 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=34.4
Q ss_pred HHHHHHHHHhC--CCCC--eEEEEeeecccCCccCCCCC-----cccccccCCCHHHHHHHHhhcCCCCCCcccccCCCC
Q psy2375 368 IYSAFKMAQKN--KDKP--TVLLIKSIKGYGLGRFGEAR-----NTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFY 438 (929)
Q Consensus 368 v~~a~~~a~~~--~~~P--~vI~~~T~KG~G~~~~~e~~-----~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~ 438 (929)
-|.+++.+.+- ..+| ++|.|.+=+-.=++.....+ ...|... +.+|--.+-||||+-+ .|+
T Consensus 123 ~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d--~~eEklSLsDRFGL~l--------~F~ 192 (249)
T PF05673_consen 123 EYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSD--TIEEKLSLSDRFGLWL--------SFY 192 (249)
T ss_pred HHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcch--HHHHHHhHHHhCCcEE--------Eec
Confidence 45666665552 1456 35555544444444322222 2345542 3456668889999864 477
Q ss_pred CCC
Q psy2375 439 KPS 441 (929)
Q Consensus 439 ~~~ 441 (929)
.|+
T Consensus 193 ~~~ 195 (249)
T PF05673_consen 193 PPD 195 (249)
T ss_pred CCC
Confidence 664
No 483
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.96 E-value=7.2e+02 Score=31.51 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=37.3
Q ss_pred cEEEEEEcCCccCCcccHHHHHH-HHHcCCCeEEEEEecCCCcc-cccccccccchHHHHHHHhhC-CceEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEISM-AAREKLDNLIMIVNCNLQRL-DGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~-A~~~~L~nli~vvn~N~~~i-dg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
+.|++... .+-. .+++-+.+ ++..+|+ ++||++.-+..- |||+-- -+.++ +.|+.. |+.|+.
T Consensus 448 kPvv~iys--tFlq-RAyDQI~~Dval~~lp-V~~vid~aGlvg~DG~TH~---g~~Di-a~lr~IPnm~V~a 512 (701)
T PLN02225 448 KPFCIIPS--AFLQ-RAYDQVVHDVDRQRKA-VRFVITSAGLVGSDGPVQC---GAFDI-AFMSSLPNMIAMA 512 (701)
T ss_pred EEEEEeeh--hHHH-HHHHHHHHHHHhhcCC-ceEEEECCccCCCCCcccc---ccHHH-HHHhcCCCCEEEe
Confidence 34556553 4443 66777644 7888985 999998755332 344321 23444 567776 887765
No 484
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=20.77 E-value=64 Score=31.90 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=21.7
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEecce
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEKV 893 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~ 893 (929)
.|..-+++++.||+|++||+|+.+.-.+.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 36678899999999999999999875544
No 485
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.66 E-value=8.7e+02 Score=27.76 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=41.8
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCC
Q psy2375 360 FGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPI 427 (929)
Q Consensus 360 ~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~ 427 (929)
+|...++++..|++...+. |.+-|+++|++..|..+. + .++...+..++++|+.|+
T Consensus 141 tG~~t~~Ei~~Av~~i~~~-g~~~i~LlhC~s~YP~~~-----~------~~nL~~i~~lk~~f~~pV 196 (327)
T TIGR03586 141 TGIATLEEIQEAVEACREA-GCKDLVLLKCTSSYPAPL-----E------DANLRTIPDLAERFNVPV 196 (327)
T ss_pred CCCCCHHHHHHHHHHHHHC-CCCcEEEEecCCCCCCCc-----c------cCCHHHHHHHHHHhCCCE
Confidence 3777899999999887765 556688888888875432 1 246667888999998875
No 486
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=20.56 E-value=7.4e+02 Score=28.21 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHhCCCCCeEEEE
Q psy2375 364 DLRKIYSAFKMAQKNKDKPTVLLI 387 (929)
Q Consensus 364 D~~~v~~a~~~a~~~~~~P~vI~~ 387 (929)
|+.+.+.+++.|.+. ++|++|.-
T Consensus 150 d~~d~~~~l~~a~~~-~~Pv~ire 172 (327)
T CHL00144 150 TPYNAKGLLKSAIRS-NNPVIFFE 172 (327)
T ss_pred CHHHHHHHHHHHHhC-CCcEEEEE
Confidence 667788888888875 68988864
No 487
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=20.16 E-value=2.1e+02 Score=28.70 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=36.3
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhh
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFI 332 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~ 332 (929)
.+.+.+....+|+.+.. ++.+..|.|.+++.+..+. +..+.-++|+|+
T Consensus 31 ~~~~~~~a~~~g~~v~~----------~QSN~EGelid~I~~a~~~-~dgiIINpga~t 78 (140)
T PF01220_consen 31 EQKCKETAAELGVEVEF----------FQSNHEGELIDWIHEARDD-VDGIIINPGAYT 78 (140)
T ss_dssp HHHHHHHHHHTTEEEEE----------EE-SSHHHHHHHHHHHTCT-TSEEEEE-GGGG
T ss_pred HHHHHHHHHHCCCeEEE----------EecCCHHHHHHHHHHHHhh-CCEEEEccchhc
Confidence 34566677778877543 5678999999999999886 888888888886
No 488
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=9.2e+02 Score=29.34 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=41.6
Q ss_pred HhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceE
Q psy2375 210 LHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNV 288 (929)
Q Consensus 210 l~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~v 288 (929)
|.+||- +-.|=.++++-.|=.. .|.+.||+++|...+.| +++.+| .||.|-. ........+..+|.++
T Consensus 71 mRaRGa-~vtDIaILVVa~dDGv-~pQTiEAI~hak~a~vP-~iVAiN----KiDk~~~----np~~v~~el~~~gl~~ 138 (509)
T COG0532 71 MRARGA-SVTDIAILVVAADDGV-MPQTIEAINHAKAAGVP-IVVAIN----KIDKPEA----NPDKVKQELQEYGLVP 138 (509)
T ss_pred HHhcCC-ccccEEEEEEEccCCc-chhHHHHHHHHHHCCCC-EEEEEe----cccCCCC----CHHHHHHHHHHcCCCH
Confidence 778864 4445555555555443 36899999999999987 555555 3666622 2333344444456654
No 489
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.14 E-value=1.3e+02 Score=33.31 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=35.0
Q ss_pred eecCCeecC-CCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 873 VKIGDTIKI-DQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 873 vk~Gd~V~~-Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
.+.++.|.+ |++|+... ..++++|.+|.| ++-+...|.+|+..+.+
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~l 272 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVRL 272 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeeeC
Confidence 455888888 99999843 389999999965 44577777788887653
Done!