Query psy2375
Match_columns 929
No_of_seqs 655 out of 3903
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:22:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qtc_A Pyruvate dehydrogenase 100.0 3E-180 1E-184 1643.6 62.5 871 4-881 4-880 (886)
2 3rim_A Transketolase, TK; TPP, 100.0 4E-101 1E-105 925.2 49.9 629 73-860 19-698 (700)
3 1r9j_A Transketolase; domains, 100.0 9E-100 3E-104 917.3 48.9 627 75-860 5-655 (673)
4 3uk1_A Transketolase; structur 100.0 9E-100 3E-104 916.2 47.2 627 80-860 48-710 (711)
5 3kom_A Transketolase; rossmann 100.0 1.9E-97 7E-102 892.6 53.8 629 78-859 7-662 (663)
6 1itz_A Transketolase; calvin c 100.0 1.3E-97 4E-102 899.5 52.5 642 67-858 7-674 (675)
7 3m49_A Transketolase; alpha-be 100.0 3.9E-97 1E-101 891.6 54.2 623 73-859 26-689 (690)
8 2r8o_A Transketolase 1, TK 1; 100.0 6.8E-97 2E-101 893.1 48.7 630 76-860 4-663 (669)
9 3l84_A Transketolase; TKT, str 100.0 1.7E-96 6E-101 879.4 50.6 613 73-858 3-631 (632)
10 2e6k_A Transketolase; structur 100.0 4.9E-96 2E-100 883.2 50.3 623 75-860 6-651 (651)
11 1gpu_A Transketolase; transfer 100.0 1.5E-93 5E-98 864.8 47.0 621 75-861 6-665 (680)
12 3mos_A Transketolase, TK; thia 100.0 9.1E-90 3.1E-94 822.8 56.8 597 72-857 9-615 (616)
13 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 3.7E-83 1.3E-87 769.8 47.0 611 49-860 3-622 (629)
14 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3.8E-81 1.3E-85 751.6 47.4 603 54-860 6-619 (621)
15 3ahc_A Phosphoketolase, xylulo 100.0 1.4E-79 4.6E-84 740.2 37.8 625 102-860 81-785 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 1.1E-43 3.7E-48 437.4 45.8 624 71-837 195-914 (933)
17 2yic_A 2-oxoglutarate decarbox 100.0 1.6E-43 5.5E-48 433.8 31.9 655 30-837 71-851 (868)
18 2xt6_A 2-oxoglutarate decarbox 100.0 1.3E-41 4.5E-46 426.1 38.2 619 70-838 359-1097(1113)
19 1ik6_A Pyruvate dehydrogenase; 100.0 2.3E-39 8E-44 365.4 20.5 297 492-860 50-367 (369)
20 1umd_B E1-beta, 2-OXO acid deh 100.0 1.7E-38 5.8E-43 353.2 23.6 299 492-860 3-322 (324)
21 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.3E-38 4.5E-43 356.0 22.1 303 489-860 11-339 (341)
22 1w85_B Pyruvate dehydrogenase 100.0 1.5E-37 5.2E-42 345.4 24.8 298 493-860 3-322 (324)
23 2bfd_B 2-oxoisovalerate dehydr 100.0 1.2E-37 4.1E-42 348.6 20.8 298 491-860 19-340 (342)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 3E-36 1E-40 336.9 23.5 296 492-860 4-336 (338)
25 1umd_A E1-alpha, 2-OXO acid de 99.9 2.5E-25 8.4E-30 251.2 22.8 250 70-422 32-294 (367)
26 2bfd_A 2-oxoisovalerate dehydr 99.9 1.1E-23 3.9E-28 239.7 22.6 253 71-421 52-311 (400)
27 1w85_A Pyruvate dehydrogenase 99.9 5.9E-22 2E-26 223.2 22.9 250 70-422 40-293 (368)
28 1qs0_A 2-oxoisovalerate dehydr 99.9 8.8E-21 3E-25 216.0 22.3 253 71-421 71-331 (407)
29 2ozl_A PDHE1-A type I, pyruvat 99.9 1.5E-20 5E-25 211.4 21.5 251 71-421 31-287 (365)
30 2dnc_A Pyruvate dehydrogenase 99.4 7.8E-13 2.7E-17 121.4 8.1 77 851-927 6-84 (98)
31 1k8m_A E2 component of branche 99.4 8.5E-13 2.9E-17 120.0 8.0 77 852-928 4-81 (93)
32 3crk_C Dihydrolipoyllysine-res 99.4 1.2E-12 4.1E-17 117.4 8.8 75 853-927 6-82 (87)
33 1yd7_A 2-keto acid:ferredoxin 99.4 5.6E-13 1.9E-17 151.7 8.0 230 561-819 63-365 (395)
34 1y8o_B Dihydrolipoyllysine-res 99.3 1.6E-12 5.6E-17 124.6 8.8 76 852-927 27-104 (128)
35 2dne_A Dihydrolipoyllysine-res 99.3 1.3E-12 4.5E-17 122.0 7.7 76 852-927 7-84 (108)
36 1ghj_A E2, E2, the dihydrolipo 99.3 3.9E-12 1.3E-16 111.8 8.0 74 854-927 3-77 (79)
37 2l5t_A Lipoamide acyltransfera 99.2 1E-11 3.5E-16 108.5 7.1 74 854-927 3-77 (77)
38 1qjo_A Dihydrolipoamide acetyl 99.2 1.7E-11 5.8E-16 107.8 7.0 73 854-927 4-76 (80)
39 1pmr_A Dihydrolipoyl succinylt 99.2 1.5E-12 5.2E-17 114.8 -0.5 74 854-927 4-78 (80)
40 4feg_A Pyruvate oxidase; carba 99.2 2.9E-11 9.9E-16 144.9 10.2 143 190-422 419-573 (603)
41 1iyu_A E2P, dihydrolipoamide a 99.2 4.1E-11 1.4E-15 105.2 7.6 72 855-928 4-75 (79)
42 1gjx_A Pyruvate dehydrogenase; 99.2 1.1E-11 3.6E-16 109.5 3.3 75 853-927 3-77 (81)
43 3dva_I Dihydrolipoyllysine-res 99.1 9.8E-12 3.3E-16 142.5 0.0 75 853-927 3-78 (428)
44 1zy8_K Pyruvate dehydrogenase 99.1 1.1E-11 3.9E-16 130.4 0.0 74 853-926 4-79 (229)
45 2kcc_A Acetyl-COA carboxylase 99.1 1.3E-10 4.4E-15 103.5 6.6 64 863-927 11-74 (84)
46 1v5e_A Pyruvate oxidase; oxido 99.0 2.7E-10 9.1E-15 136.2 10.0 121 189-393 411-541 (590)
47 1z6h_A Biotin/lipoyl attachmen 99.0 3.6E-10 1.2E-14 97.0 8.0 64 864-927 6-69 (72)
48 2uz1_A Benzaldehyde lyase; thi 99.0 3.6E-10 1.2E-14 134.2 10.5 120 189-391 417-546 (563)
49 1ybh_A Acetolactate synthase, 99.0 2.7E-10 9.4E-15 136.1 9.3 122 190-396 425-563 (590)
50 1t9b_A Acetolactate synthase, 99.0 1E-09 3.5E-14 133.1 13.3 122 190-396 512-642 (677)
51 2iht_A Carboxyethylarginine sy 99.0 2.5E-10 8.6E-15 135.9 7.8 118 189-391 434-561 (573)
52 2pan_A Glyoxylate carboligase; 99.0 2.9E-10 1E-14 136.5 8.3 119 190-393 441-582 (616)
53 1bdo_A Acetyl-COA carboxylase; 99.0 4.5E-10 1.5E-14 98.7 7.3 60 867-926 21-80 (80)
54 2vk8_A Pyruvate decarboxylase 99.0 1.5E-10 5E-15 137.6 5.1 123 189-391 411-542 (563)
55 1q6z_A BFD, BFDC, benzoylforma 99.0 4.3E-10 1.5E-14 132.6 8.9 117 191-392 401-526 (528)
56 2vbi_A Pyruvate decarboxylase; 99.0 2.7E-10 9.4E-15 135.4 7.0 121 189-393 407-535 (566)
57 2dn8_A Acetyl-COA carboxylase 99.0 7.8E-10 2.7E-14 101.7 7.7 64 863-927 23-86 (100)
58 1ozh_A ALS, acetolactate synth 99.0 4.1E-10 1.4E-14 133.9 6.7 120 189-393 418-545 (566)
59 2wvg_A PDC, pyruvate decarboxy 99.0 7.7E-10 2.6E-14 131.6 8.8 120 189-392 411-542 (568)
60 1ovm_A Indole-3-pyruvate decar 99.0 4.5E-10 1.5E-14 133.0 6.8 118 189-391 406-532 (552)
61 2k7v_A Dihydrolipoyllysine-res 98.9 1.6E-10 5.6E-15 102.9 1.9 62 866-927 11-72 (85)
62 2nxw_A Phenyl-3-pyruvate decar 98.9 6.3E-10 2.2E-14 132.3 7.3 117 190-391 421-542 (565)
63 2pgn_A Cyclohexane-1,2-dione h 98.9 3.2E-10 1.1E-14 135.5 4.8 123 190-397 423-553 (589)
64 2vbf_A Branched-chain alpha-ke 98.9 8.4E-10 2.9E-14 131.3 7.2 120 189-392 423-552 (570)
65 1dcz_A Transcarboxylase 1.3S s 98.9 2.4E-09 8.3E-14 93.1 8.2 64 863-926 14-77 (77)
66 2d5d_A Methylmalonyl-COA decar 98.9 2.6E-09 9E-14 91.9 8.4 63 864-926 12-74 (74)
67 3eya_A Pyruvate dehydrogenase 98.9 2E-09 6.8E-14 127.5 9.3 120 189-393 404-531 (549)
68 2jku_A Propionyl-COA carboxyla 98.9 6.3E-10 2.1E-14 101.2 2.3 63 864-926 32-94 (94)
69 3n6r_A Propionyl-COA carboxyla 98.8 2.8E-09 9.7E-14 129.1 8.1 64 863-926 618-681 (681)
70 2ejm_A Methylcrotonoyl-COA car 98.8 5.7E-09 2E-13 95.7 6.5 65 863-927 20-84 (99)
71 2c31_A Oxalyl-COA decarboxylas 98.8 1.2E-08 4E-13 121.4 10.8 118 190-393 425-549 (568)
72 2q28_A Oxalyl-COA decarboxylas 98.7 1.3E-08 4.4E-13 120.9 9.2 120 189-394 419-547 (564)
73 3va7_A KLLA0E08119P; carboxyla 98.7 9.4E-09 3.2E-13 131.2 8.3 62 864-925 1174-1235(1236)
74 3hbl_A Pyruvate carboxylase; T 98.7 1.3E-08 4.3E-13 129.6 7.7 65 863-927 1083-1147(1150)
75 3u9t_A MCC alpha, methylcroton 98.7 1.8E-09 6.2E-14 130.7 0.0 66 863-928 608-673 (675)
76 2x7j_A 2-succinyl-5-enolpyruvy 98.7 5.3E-09 1.8E-13 125.3 4.0 118 190-393 454-582 (604)
77 1zko_A Glycine cleavage system 98.6 9.3E-08 3.2E-12 92.5 7.5 67 856-927 40-114 (136)
78 3ju3_A Probable 2-oxoacid ferr 98.4 2E-07 7E-12 88.1 6.3 74 725-819 13-88 (118)
79 3bg3_A Pyruvate carboxylase, m 98.4 4.6E-08 1.6E-12 118.2 2.1 65 862-926 654-718 (718)
80 3hww_A 2-succinyl-5-enolpyruvy 98.4 1.9E-07 6.4E-12 110.8 7.3 114 191-391 417-539 (556)
81 3lq1_A 2-succinyl-5-enolpyruvy 98.4 2.4E-07 8.3E-12 110.3 6.4 119 189-394 432-563 (578)
82 2qf7_A Pyruvate carboxylase pr 98.4 1.6E-07 5.5E-12 119.8 4.4 64 863-926 1101-1164(1165)
83 2c42_A Pyruvate-ferredoxin oxi 98.3 1.5E-05 5.3E-10 102.0 19.8 187 564-769 55-311 (1231)
84 2k32_A A; NMR {Campylobacter j 98.2 6E-07 2.1E-11 84.2 4.6 64 864-927 8-101 (116)
85 1onl_A Glycine cleavage system 98.1 2.8E-06 9.6E-11 81.4 5.0 55 873-927 44-105 (128)
86 3a7l_A H-protein, glycine clea 98.0 3.3E-06 1.1E-10 80.9 5.2 68 856-927 32-106 (128)
87 1hpc_A H protein of the glycin 98.0 7.9E-06 2.7E-10 78.5 6.8 67 856-927 31-105 (131)
88 3klr_A Glycine cleavage system 97.2 0.00041 1.4E-08 65.9 6.5 40 874-913 41-80 (125)
89 2c42_A Pyruvate-ferredoxin oxi 97.1 0.0015 5E-08 83.9 11.2 102 220-391 953-1070(1231)
90 3ne5_B Cation efflux system pr 97.0 0.00067 2.3E-08 77.4 6.7 64 864-927 128-240 (413)
91 3mxu_A Glycine cleavage system 97.0 0.0009 3.1E-08 64.8 6.4 41 874-914 63-103 (143)
92 3tzu_A GCVH, glycine cleavage 96.9 0.00087 3E-08 64.6 5.6 37 874-910 58-94 (137)
93 3lnn_A Membrane fusion protein 96.8 0.00096 3.3E-08 74.1 5.8 64 864-927 64-204 (359)
94 3fpp_A Macrolide-specific effl 96.7 0.00097 3.3E-08 73.6 5.1 64 864-927 38-189 (341)
95 2f1m_A Acriflavine resistance 96.7 0.00041 1.4E-08 74.4 1.8 64 864-927 29-165 (277)
96 3hgb_A Glycine cleavage system 96.4 0.0043 1.5E-07 60.8 6.4 37 874-910 68-104 (155)
97 2dn8_A Acetyl-COA carboxylase 96.2 0.0018 6.3E-08 58.9 2.5 46 882-927 5-50 (100)
98 1vf7_A Multidrug resistance pr 96.2 0.0014 4.8E-08 73.4 2.1 64 864-927 50-172 (369)
99 4dk0_A Putative MACA; alpha-ha 95.5 0.0016 5.5E-08 72.6 -1.3 62 864-925 39-188 (369)
100 1z6h_A Biotin/lipoyl attachmen 95.2 0.019 6.6E-07 48.3 4.7 32 896-927 1-32 (72)
101 2d5d_A Methylmalonyl-COA decar 94.8 0.029 9.8E-07 47.4 4.9 33 895-927 6-38 (74)
102 3cdx_A Succinylglutamatedesucc 94.6 0.068 2.3E-06 59.5 8.5 60 866-927 275-338 (354)
103 1dcz_A Transcarboxylase 1.3S s 94.6 0.029 9.8E-07 48.0 4.3 34 894-927 8-41 (77)
104 3fmc_A Putative succinylglutam 94.5 0.07 2.4E-06 59.8 8.5 65 863-929 295-365 (368)
105 3na6_A Succinylglutamate desuc 94.1 0.097 3.3E-06 57.8 8.4 62 864-927 263-328 (331)
106 2kcc_A Acetyl-COA carboxylase 93.9 0.031 1.1E-06 49.0 3.1 33 895-927 6-38 (84)
107 1f3z_A EIIA-GLC, glucose-speci 93.6 0.056 1.9E-06 53.5 4.6 60 864-927 19-117 (161)
108 2gpr_A Glucose-permease IIA co 93.2 0.065 2.2E-06 52.7 4.4 59 865-927 15-112 (154)
109 2jku_A Propionyl-COA carboxyla 92.8 0.051 1.7E-06 48.7 2.8 34 894-927 25-58 (94)
110 2ejm_A Methylcrotonoyl-COA car 92.5 0.073 2.5E-06 48.1 3.5 35 893-927 13-47 (99)
111 1ax3_A Iiaglc, glucose permeas 92.5 0.055 1.9E-06 53.6 2.8 60 864-927 19-117 (162)
112 1bdo_A Acetyl-COA carboxylase; 92.4 0.078 2.7E-06 45.7 3.3 33 895-927 5-44 (80)
113 3lnn_A Membrane fusion protein 90.2 0.22 7.6E-06 54.9 5.0 60 868-927 30-90 (359)
114 3fpp_A Macrolide-specific effl 90.0 0.24 8.1E-06 54.3 5.0 43 884-927 22-64 (341)
115 2l5t_A Lipoamide acyltransfera 89.6 0.14 4.8E-06 43.7 2.1 30 898-927 11-40 (77)
116 1qjo_A Dihydrolipoamide acetyl 89.1 0.33 1.1E-05 41.6 4.2 26 902-927 14-39 (80)
117 1k8m_A E2 component of branche 88.7 0.35 1.2E-05 43.2 4.1 28 900-927 16-43 (93)
118 2k7v_A Dihydrolipoyllysine-res 88.6 0.036 1.2E-06 48.6 -2.4 34 894-927 2-35 (85)
119 3crk_C Dihydrolipoyllysine-res 88.5 0.47 1.6E-05 41.6 4.8 28 900-927 17-44 (87)
120 1gjx_A Pyruvate dehydrogenase; 88.2 0.31 1.1E-05 41.9 3.4 31 897-927 10-40 (81)
121 2qj8_A MLR6093 protein; struct 88.2 0.92 3.1E-05 49.8 8.0 62 864-927 263-328 (332)
122 2dne_A Dihydrolipoyllysine-res 87.5 0.4 1.4E-05 44.1 3.8 27 901-927 20-46 (108)
123 2dnc_A Pyruvate dehydrogenase 87.5 0.39 1.3E-05 43.3 3.7 27 901-927 20-46 (98)
124 1ghj_A E2, E2, the dihydrolipo 87.4 0.25 8.7E-06 42.3 2.3 29 899-927 12-40 (79)
125 3ne5_B Cation efflux system pr 86.9 0.72 2.5E-05 52.2 6.4 60 868-927 94-155 (413)
126 2xha_A NUSG, transcription ant 86.3 0.56 1.9E-05 47.5 4.4 48 870-923 22-98 (193)
127 1y8o_B Dihydrolipoyllysine-res 86.0 0.69 2.4E-05 43.9 4.7 27 901-927 40-66 (128)
128 1vf7_A Multidrug resistance pr 85.7 0.39 1.3E-05 53.5 3.3 43 884-927 34-76 (369)
129 1pmr_A Dihydrolipoyl succinylt 83.2 0.22 7.5E-06 42.9 -0.1 28 900-927 14-41 (80)
130 4dk0_A Putative MACA; alpha-ha 82.4 0.36 1.2E-05 53.4 1.1 54 873-927 12-65 (369)
131 3n6r_A Propionyl-COA carboxyla 82.0 0.95 3.2E-05 54.7 4.7 34 894-927 612-645 (681)
132 3our_B EIIA, phosphotransferas 82.0 1.6 5.6E-05 43.7 5.6 43 882-927 62-139 (183)
133 3d4r_A Domain of unknown funct 80.6 2.2 7.5E-05 41.9 5.8 49 864-912 107-156 (169)
134 1iyu_A E2P, dihydrolipoamide a 80.0 1.6 5.6E-05 37.1 4.3 25 902-927 13-37 (79)
135 2xhc_A Transcription antitermi 78.1 1.7 5.9E-05 48.2 4.8 49 869-923 61-138 (352)
136 3bg3_A Pyruvate carboxylase, m 75.5 1.5 5.2E-05 53.1 3.7 33 895-927 650-682 (718)
137 3va7_A KLLA0E08119P; carboxyla 73.6 2.3 7.8E-05 54.7 4.8 33 895-927 1168-1200(1236)
138 3hbl_A Pyruvate carboxylase; T 73.2 2.2 7.7E-05 54.5 4.6 33 895-927 1078-1110(1150)
139 2xha_A NUSG, transcription ant 70.5 1.3 4.6E-05 44.7 1.3 46 873-924 85-158 (193)
140 3u9t_A MCC alpha, methylcroton 69.0 1 3.4E-05 54.5 0.0 34 894-927 602-635 (675)
141 2qf7_A Pyruvate carboxylase pr 67.0 3.5 0.00012 52.8 4.4 33 895-927 1096-1128(1165)
142 2auk_A DNA-directed RNA polyme 64.5 5.8 0.0002 40.1 4.6 46 869-916 62-107 (190)
143 1pyo_A Caspase-2; apoptosis, c 55.3 38 0.0013 33.3 8.6 110 252-394 35-158 (167)
144 2vbi_A Pyruvate decarboxylase; 55.2 81 0.0028 36.6 13.0 117 564-692 43-169 (566)
145 1v5e_A Pyruvate oxidase; oxido 54.7 35 0.0012 40.1 9.8 118 564-692 45-164 (590)
146 3fmc_A Putative succinylglutam 50.0 12 0.00042 41.6 4.5 33 894-927 290-322 (368)
147 2ozl_B PDHE1-B, pyruvate dehyd 48.9 41 0.0014 36.8 8.5 60 221-290 87-158 (341)
148 2gpr_A Glucose-permease IIA co 48.2 8.3 0.00028 37.7 2.4 61 865-925 87-153 (154)
149 1q6z_A BFD, BFDC, benzoylforma 48.0 52 0.0018 37.9 9.7 120 564-692 40-161 (528)
150 3p45_A Caspase-6; protease, hu 47.8 38 0.0013 33.8 7.2 109 252-394 46-167 (179)
151 3lu0_D DNA-directed RNA polyme 46.4 13 0.00045 47.5 4.4 36 869-906 1001-1036(1407)
152 2dko_A Caspase-3; low barrier 45.7 31 0.0011 33.1 6.1 111 252-395 18-140 (146)
153 1qs0_B 2-oxoisovalerate dehydr 45.5 44 0.0015 36.3 8.1 61 221-290 77-148 (338)
154 3gxh_A Putative phosphatase (D 45.0 37 0.0013 32.5 6.6 34 357-390 72-107 (157)
155 2h54_A Caspase-1; allosteric s 44.1 76 0.0026 31.4 8.8 117 252-394 45-170 (178)
156 1ik6_A Pyruvate dehydrogenase; 43.7 76 0.0026 35.1 9.7 73 197-290 111-194 (369)
157 2xhc_A Transcription antitermi 43.5 5.9 0.0002 43.9 0.6 16 909-924 183-198 (352)
158 2wvg_A PDC, pyruvate decarboxy 43.1 88 0.003 36.3 10.7 120 564-692 43-169 (568)
159 2fp3_A Caspase NC; apoptosis, 42.5 38 0.0013 36.8 6.9 112 252-394 63-188 (316)
160 3na6_A Succinylglutamate desuc 42.5 17 0.00058 39.8 4.1 33 894-927 257-289 (331)
161 2uz1_A Benzaldehyde lyase; thi 41.1 1E+02 0.0036 35.7 10.9 120 563-692 42-164 (563)
162 3it5_A Protease LASA; metallop 40.4 24 0.0008 35.3 4.4 50 863-926 54-103 (182)
163 1brw_A PYNP, protein (pyrimidi 39.5 25 0.00084 40.0 4.9 37 890-926 331-398 (433)
164 1ybh_A Acetolactate synthase, 39.5 1E+02 0.0036 35.9 10.6 119 564-692 52-172 (590)
165 2dsj_A Pyrimidine-nucleoside ( 39.3 23 0.0008 40.1 4.7 35 891-926 325-390 (423)
166 3u7r_A NADPH-dependent FMN red 39.3 27 0.00091 35.0 4.7 74 734-817 15-89 (190)
167 2bco_A Succinylglutamate desuc 39.3 18 0.00062 39.8 3.7 49 871-926 279-327 (350)
168 3eya_A Pyruvate dehydrogenase 39.0 1.5E+02 0.005 34.3 11.7 119 564-692 43-162 (549)
169 2o1s_A 1-deoxy-D-xylulose-5-ph 38.9 89 0.003 37.0 9.9 62 221-290 386-450 (621)
170 3h5q_A PYNP, pyrimidine-nucleo 38.8 26 0.00088 39.9 4.9 35 892-926 336-401 (436)
171 3h11_B Caspase-8; cell death, 38.7 54 0.0018 34.7 7.2 88 274-395 51-149 (271)
172 2iht_A Carboxyethylarginine sy 37.8 1.5E+02 0.0051 34.4 11.6 120 564-692 50-171 (573)
173 1ozh_A ALS, acetolactate synth 36.7 1.2E+02 0.0042 35.1 10.6 118 564-692 50-170 (566)
174 1m72_A Caspase-1; caspase, cys 36.0 49 0.0017 35.0 6.4 111 252-395 34-155 (272)
175 3h11_A CAsp8 and FADD-like apo 34.6 80 0.0027 33.5 7.7 99 252-394 45-156 (272)
176 1ovm_A Indole-3-pyruvate decar 34.5 1.9E+02 0.0066 33.2 11.7 119 564-692 45-170 (552)
177 2bfd_B 2-oxoisovalerate dehydr 34.5 87 0.003 34.1 8.3 74 197-290 80-164 (342)
178 4ehd_A Caspase-3; caspase, apo 34.2 54 0.0018 34.9 6.3 91 273-395 70-168 (277)
179 2tpt_A Thymidine phosphorylase 33.5 24 0.00083 40.2 3.6 36 891-926 337-403 (440)
180 1w85_B Pyruvate dehydrogenase 33.0 83 0.0028 33.9 7.7 61 221-290 75-146 (324)
181 2j32_A Caspase-3; Pro-caspase3 31.7 61 0.0021 33.8 6.1 90 274-395 43-140 (250)
182 1qtn_A Caspase-8; apoptosis, d 31.3 75 0.0026 31.0 6.3 88 273-394 56-154 (164)
183 1umd_B E1-beta, 2-OXO acid deh 30.7 1.3E+02 0.0046 32.2 8.9 61 221-290 76-147 (324)
184 2vzf_A NADH-dependent FMN redu 30.6 1.5E+02 0.0051 29.0 8.6 86 734-829 16-110 (197)
185 1uou_A Thymidine phosphorylase 30.6 43 0.0015 38.4 5.1 36 891-926 369-433 (474)
186 3od5_A Caspase-6; caspase doma 30.3 84 0.0029 33.3 7.0 110 252-395 23-145 (278)
187 2pan_A Glyoxylate carboligase; 29.9 3.9E+02 0.013 31.2 13.4 118 564-691 67-187 (616)
188 3cdx_A Succinylglutamatedesucc 29.8 44 0.0015 36.7 4.9 34 893-927 266-299 (354)
189 3tuf_B Stage II sporulation pr 29.5 37 0.0013 35.6 3.9 55 863-926 99-153 (245)
190 2nxw_A Phenyl-3-pyruvate decar 29.4 1.5E+02 0.0051 34.4 9.6 121 563-691 59-185 (565)
191 2c31_A Oxalyl-COA decarboxylas 29.3 1.7E+02 0.0057 34.0 10.0 119 564-692 49-171 (568)
192 1ax3_A Iiaglc, glucose permeas 28.7 31 0.001 33.9 2.9 27 865-891 92-118 (162)
193 2r8o_A Transketolase 1, TK 1; 28.4 2.2E+02 0.0076 33.9 11.0 61 222-290 429-492 (669)
194 3kkj_A Amine oxidase, flavin-c 28.2 36 0.0012 33.2 3.5 30 726-759 3-33 (336)
195 3uoa_B Mucosa-associated lymph 28.1 1.5E+02 0.0051 33.1 8.7 110 251-393 6-130 (390)
196 3our_B EIIA, phosphotransferas 28.1 30 0.001 34.7 2.7 45 835-891 96-140 (183)
197 2vk8_A Pyruvate decarboxylase 27.7 1.3E+02 0.0046 34.7 8.8 116 564-692 44-170 (563)
198 1itz_A Transketolase; calvin c 27.6 1.9E+02 0.0065 34.6 10.2 62 221-290 441-505 (675)
199 2nn3_C Caspase-1; cysteine pro 27.4 89 0.003 33.8 6.6 110 252-394 62-182 (310)
200 2vbf_A Branched-chain alpha-ke 27.3 1.6E+02 0.0056 34.1 9.5 119 564-692 65-190 (570)
201 1t9b_A Acetolactate synthase, 27.2 2.5E+02 0.0084 33.5 11.2 121 561-691 502-635 (677)
202 1zko_A Glycine cleavage system 26.9 14 0.00046 35.4 0.0 32 896-927 38-70 (136)
203 2e6k_A Transketolase; structur 26.8 2.7E+02 0.0092 33.1 11.3 50 236-290 435-487 (651)
204 2q28_A Oxalyl-COA decarboxylas 26.6 2.2E+02 0.0074 32.9 10.3 120 564-692 47-169 (564)
205 2pgn_A Cyclohexane-1,2-dione h 26.5 1.8E+02 0.0062 33.9 9.7 119 564-692 45-165 (589)
206 3e4c_A Caspase-1; zymogen, inf 26.0 1.8E+02 0.0062 31.2 8.8 95 274-395 84-188 (302)
207 3mos_A Transketolase, TK; thia 25.8 2.5E+02 0.0084 33.2 10.7 62 221-290 381-445 (616)
208 3nyy_A Putative glycyl-glycine 24.5 51 0.0017 34.6 3.9 88 830-926 111-200 (252)
209 2q62_A ARSH; alpha/beta, flavo 23.5 1.1E+02 0.0036 31.8 6.2 65 742-818 57-121 (247)
210 2hsi_A Putative peptidase M23; 23.5 55 0.0019 34.9 4.0 55 863-926 196-250 (282)
211 2ql9_A Caspase-7; cysteine pro 23.4 92 0.0031 30.8 5.3 111 252-395 46-168 (173)
212 1nw9_B Caspase 9, apoptosis-re 23.1 1.5E+02 0.0051 31.2 7.4 116 252-394 23-152 (277)
213 2uyg_A 3-dehydroquinate dehydr 23.0 1.4E+02 0.0048 28.8 6.3 70 274-388 30-99 (149)
214 3zyw_A Glutaredoxin-3; metal b 22.6 2.2E+02 0.0076 25.3 7.5 35 726-761 16-55 (111)
215 3kom_A Transketolase; rossmann 22.6 2.7E+02 0.0093 33.2 10.2 62 221-290 429-493 (663)
216 1uqr_A 3-dehydroquinate dehydr 22.3 1.6E+02 0.0055 28.6 6.5 69 274-388 32-100 (154)
217 1h05_A 3-dehydroquinate dehydr 21.7 1.4E+02 0.005 28.6 6.0 69 274-388 33-101 (146)
218 1gpu_A Transketolase; transfer 21.6 2.6E+02 0.0088 33.5 9.8 50 236-290 448-500 (680)
219 3ipz_A Monothiol glutaredoxin- 21.5 2.4E+02 0.0081 24.9 7.4 34 726-760 18-56 (109)
220 1r9j_A Transketolase; domains, 21.5 3.8E+02 0.013 31.9 11.2 50 236-290 440-492 (673)
221 3hww_A 2-succinyl-5-enolpyruvy 21.0 3.4E+02 0.012 31.3 10.5 117 564-691 48-170 (556)
222 4feg_A Pyruvate oxidase; carba 20.8 2.2E+02 0.0075 33.3 8.9 116 564-692 52-171 (603)
223 2gm2_A Conserved hypothetical 20.8 19 0.00064 34.1 -0.3 33 726-759 65-99 (132)
224 3u80_A 3-dehydroquinate dehydr 20.7 1.9E+02 0.0066 27.9 6.7 71 275-388 36-106 (151)
225 2gu1_A Zinc peptidase; alpha/b 20.4 66 0.0023 35.4 4.0 22 905-926 281-302 (361)
226 2qj8_A MLR6093 protein; struct 20.3 75 0.0026 34.4 4.4 32 895-927 258-289 (332)
227 1f1j_A Caspase-7 protease; cas 20.1 1.5E+02 0.0052 31.8 6.7 111 252-395 71-193 (305)
No 1
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=3.3e-180 Score=1643.55 Aligned_cols=871 Identities=54% Similarity=0.953 Sum_probs=735.8
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHCCCcCCCCC-CcccccCCCCCcCCCCCChhhHHHHHHH
Q psy2375 4 TTKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFK-NTAYINTISNNFDDDFPGNIKIEEHLQS 82 (929)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 82 (929)
.-+|+||+|||||+|||++||+++|++||+|||++|+++|+++|+.+|+.. +|||||||++++|+.+|+|.+|++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~p~d~~l~~~la~ 83 (886)
T 2qtc_A 4 FPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRS 83 (886)
T ss_dssp ----------------------------------------------------CCCSSCSSCGGGCCCCCSCHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCccCCchhhhCCCccccCCCchHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999999 9999999999999999999999977778
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHh
Q psy2375 83 LIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMI 162 (929)
Q Consensus 83 ~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~ 162 (929)
+|||++++||++||+++.++|||+|+++|+++||.+||++||+.++++.++||||++||+||++||+++|+||+++++|+
T Consensus 84 ~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~ 163 (886)
T 2qtc_A 84 AIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLD 163 (886)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSCHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999889999999999999999999999999998766666679999999999999999999999999999
Q ss_pred hhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHH
Q psy2375 163 NFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEIS 242 (929)
Q Consensus 163 ~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~ 242 (929)
+|||+..++||+|||||++||++|+|+|||||+|+++|+|+|+|+|||++|++.++.+++||||||||||+||++|||||
T Consensus 164 ~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~ 243 (886)
T 2qtc_A 164 NFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAIT 243 (886)
T ss_dssp TBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHH
T ss_pred hccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHH
Confidence 99998777899999999999988999999999999999999999999999988788999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh
Q psy2375 243 MAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ 322 (929)
Q Consensus 243 ~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q 322 (929)
+|++++|+|||||||||+|+|||||+++.+++++|+++|+++||++++|+||++||+||++|.++.|+++|++++||+||
T Consensus 244 ~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q 323 (886)
T 2qtc_A 244 IATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQ 323 (886)
T ss_dssp HHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHH
T ss_pred HHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhh
Confidence 99999999999999999999999999987889999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCC
Q psy2375 323 NYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEAR 402 (929)
Q Consensus 323 ~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~ 402 (929)
+|++++|+|+|+||||+||+|++||++|||++||||+|||||+.+|++|+++|++++++||||||+|+||||++++++++
T Consensus 324 ~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~~~~~e~~ 403 (886)
T 2qtc_A 324 TFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAKGK 403 (886)
T ss_dssp HHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCTTCC---
T ss_pred hhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCEEEEEeeeeccccchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999998789999999999999999888999
Q ss_pred cccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChHHHhh
Q psy2375 403 NTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKK 482 (929)
Q Consensus 403 ~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~ 482 (929)
+.+|+++|++.++++.+|++++||++|+++++.||++|.+++++++|+.+++++++|++|+++......+.+|++..|..
T Consensus 404 ~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~ 483 (886)
T 2qtc_A 404 NIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGA 483 (886)
T ss_dssp ----------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHH
T ss_pred ccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhh
Confidence 99999989999999999999999999998888999999999999999999999999999987655433567787777776
Q ss_pred hhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcC
Q psy2375 483 ILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKN 562 (929)
Q Consensus 483 ~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~ 562 (929)
..+.+ + ++++||++|+++|.+|++++++++|||+++||+++++|+++||++.++|++.+|.|+|+|++++++|++++|
T Consensus 484 ~~~~~-~-~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~ 561 (886)
T 2qtc_A 484 LLEEQ-S-KEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEK 561 (886)
T ss_dssp HHSCC-S-SCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTT
T ss_pred hccCC-C-CcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCC
Confidence 55444 3 678999999999999999977789999999999999999999999999999999999999999999999999
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+|+||+||+|++||++|+|+++|||++|.+++||+++||||++||++||+|++++|+.++|++++++++.+++++|+|||
T Consensus 562 ~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq 641 (886)
T 2qtc_A 562 GQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHE 641 (886)
T ss_dssp CCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTC
T ss_pred CceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccC
Confidence 99999999999998889999999999997799999999999999999999999999999999999999889999999999
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC-CceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN-QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNN 721 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~-~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~ 721 (929)
+++|++++|++|||+||+|+|++|++.++++|++++++| +++||||++++++++.+|.++++..+.+.+|+|+++++..
T Consensus 642 ~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~~gga~vlr~g~~ 721 (886)
T 2qtc_A 642 DGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEG 721 (886)
T ss_dssp CSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHHHHTCEEEEEECC
T ss_pred CcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcchhhhccCceEEEEecCC
Confidence 999999999999999999999999999999999987763 5679999999887664576665433456789999998620
Q ss_pred cCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcE
Q psy2375 722 EKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPI 800 (929)
Q Consensus 722 ~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~v 800 (929)
+++||+||++|++|++|+ ||++|+++|||+++|||++|++|||++++.++|||++||.++|+..|+++++.+ +++
T Consensus 722 --~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~--~~v 797 (886)
T 2qtc_A 722 --SKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND--APA 797 (886)
T ss_dssp --SSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS--SCE
T ss_pred --CCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC--CCE
Confidence 136999999999999999 999999988999999999999999999999999999999999999999999966 689
Q ss_pred EEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheeccccccCc---CCccccceeeeeeecCC
Q psy2375 801 IVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI---GDLSEVEVSTVMVKIGD 877 (929)
Q Consensus 801 Vtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L---G~i~eg~V~~~~vk~Gd 877 (929)
|++|||+++++++|++|++. .++.++|+|+||.||++++|+++||+|+++|+++++..| |+++..++.++..++|=
T Consensus 798 Va~ed~~~g~~~~~~~~~~~-~~~~~lG~D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~~g~~~~~~~~~~~~~~~~ 876 (886)
T 2qtc_A 798 VASTDYMKLFAEQVRTYVPA-DDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNI 876 (886)
T ss_dssp EEECSSCTHHHHTTGGGCCS-SCEEEECCCSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHHHTSSCHHHHHHHHHHTTC
T ss_pred EEEEecccchHHHHHHHcCC-CCeEEEEeCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC
Confidence 99999999999999999973 368899999999999999999999999999999998888 67999999999988875
Q ss_pred eecC
Q psy2375 878 TIKI 881 (929)
Q Consensus 878 ~V~~ 881 (929)
..++
T Consensus 877 ~~~~ 880 (886)
T 2qtc_A 877 DADK 880 (886)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5443
No 2
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.2e-101 Score=925.23 Aligned_cols=629 Identities=17% Similarity=0.202 Sum_probs=512.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC-C---CCCCCCCcEEEeCCCchHHHHH
Q psy2375 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR-A---PTHSHGGDLIYIQGHSAPGVYA 148 (929)
Q Consensus 73 ~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~-~---p~~~~~dd~i~~~GH~ap~~Ya 148 (929)
-.+|++++.+.||+++++||.+|+ +||+|+++|+++++.+||+++|+ + |+|+++|+||||+||+||++|+
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~------sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa 92 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVG------NGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYI 92 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT------CSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHH
Confidence 367999997789999999999998 79999999999999999998887 3 5667899999999999999999
Q ss_pred HHHHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcccc------CCCCc
Q psy2375 149 RAFLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKIT------NTINR 221 (929)
Q Consensus 149 ~~~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~------~~~~~ 221 (929)
+++|+|+ ++.++|++|||. ++.++|||++.++|+ ++++|||+|+|+++|+|+|+|.||++++..+ +..++
T Consensus 93 ~l~l~G~~~~~~~l~~fr~~--gs~~~ghp~~~~~pg-v~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~ 169 (700)
T 3rim_A 93 QLYLGGFGLELSDIESLRTW--GSKTPGHPEFRHTPG-VEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDH 169 (700)
T ss_dssp HHHHTTSSCCHHHHTTTTST--TCSCCSSCCBTTBTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCC
T ss_pred HHHHhCCCCCHHHHHHhhcC--CCCCCCCCCCCCCCC-ccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCC
Confidence 9999999 999999999997 556899999888885 8999999999999999999999998766332 24589
Q ss_pred EEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhh
Q psy2375 222 KIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLL 301 (929)
Q Consensus 222 ~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~ 301 (929)
+|||++|||+++||++|||+++|++++|+|||||||+|+++|+||+.. ...+++.++|+++||+++.|.
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~--~~~~~~~~~~~a~G~~~~~V~--------- 238 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNI--ALCEDTAARYRAYGWHVQEVE--------- 238 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGG--TCCCCHHHHHHHHTCEEEEEE---------
T ss_pred eEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhh--ccchhHHHHHHHcCCeEEEEC---------
Confidence 999999999999999999999999999999999999999999999986 357889999999999999984
Q ss_pred hcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCC
Q psy2375 302 KCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDK 381 (929)
Q Consensus 302 ~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~ 381 (929)
||||+++|++|+++|++..++
T Consensus 239 -----------------------------------------------------------DG~D~~al~~Al~~A~~~~~~ 259 (700)
T 3rim_A 239 -----------------------------------------------------------GGENVVGIEEAIANAQAVTDR 259 (700)
T ss_dssp -----------------------------------------------------------CTTCHHHHHHHHHHHHHCCSS
T ss_pred -----------------------------------------------------------CCCCHHHHHHHHHHHHHcCCC
Confidence 899999999999999986689
Q ss_pred CeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHH---------
Q psy2375 382 PTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKN--------- 452 (929)
Q Consensus 382 P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~--------- 452 (929)
|++|+|+|+||+|+++ .|+...+|+. ++++++++..++.++|+.. .+|+.|++....++-..+
T Consensus 260 P~lI~~~T~kG~G~~~-~e~~~~~Hg~-~~~~e~~~~~~~~l~~~~~------~~f~v~~~v~~~~~~~~~~g~~~~~~w 331 (700)
T 3rim_A 260 PSFIALRTVIGYPAPN-LMDTGKAHGA-ALGDDEVAAVKKIVGFDPD------KTFQVREDVLTHTRGLVARGKQAHERW 331 (700)
T ss_dssp CEEEEEECCTTTTCTT-TTTSHHHHHS-CCCHHHHHHHHHHHTCCTT------CSSCCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred CEEEEEEEEeeecCCc-cCCCccccCC-CCCHHHHHHHHHHcCCCcc------cCccCCHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999997 6888899997 8999999999999999642 358877643221111100
Q ss_pred -----------------HHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCc
Q psy2375 453 -----------------CRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNR 515 (929)
Q Consensus 453 -----------------~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~r 515 (929)
..+.+.+.+|..+.. ..|. | ..+.++++||.+|+++|.++++. +++
T Consensus 332 ~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~-----~~p~---~------~~~~~~~atr~a~~~~L~~l~~~---~p~ 394 (700)
T 3rim_A 332 QLEFDAWARREPERKALLDRLLAQKLPDGWDA-----DLPH---W------EPGSKALATRAASGAVLSALGPK---LPE 394 (700)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTCCCTTTTS-----SCCC---C------CTTSSCEEHHHHHHHHHHHHTTT---CTT
T ss_pred HHHHHHHHhhChHHHHHHHHHhccCCCcchhh-----hccc---c------cccccchHHHHHHHHHHHHHHhh---CCC
Confidence 011122223321100 0111 1 00235789999999999999987 556
Q ss_pred eeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc------C----CceEeccccchhhHHHHHHHHHH
Q psy2375 516 VVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK------N----GQILQEGINEAGGMGSWIAAATS 585 (929)
Q Consensus 516 Iv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~------~----gR~~~~GIaE~~~~~~~iAag~g 585 (929)
||++++|++.++++. ++.++. |++.+ | +|+||+||+||+|+++ |+ |
T Consensus 395 vv~~saDl~~s~~t~--~~~~~~------------------f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~--A~--G 450 (700)
T 3rim_A 395 LWGGSADLAGSNNTT--IKGADS------------------FGPPSISTKEYTAHWYGRTLHFGVREHAMGAI--LS--G 450 (700)
T ss_dssp EEEEESSCHHHHTCS--CTTCCE------------------ESCGGGCCSSCCEETTCCEEECCSCHHHHHHH--HH--H
T ss_pred EEEEeCCccCCCCcc--cccchh------------------hcccccccccCCcccCCceeecCccHHHHHHH--HH--H
Confidence 799999999876642 111111 11223 5 6999999999998886 44 5
Q ss_pred HhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHH
Q psy2375 586 YSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAH 665 (929)
Q Consensus 586 ~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~ 665 (929)
||++| |++||+.+|.+|. .++.++++..+.++ .+|++++||+|+++|+||+|||+++|++++|+||||+|++|+|++
T Consensus 451 lA~~g-G~~Pv~~tF~~F~-d~~~~~ir~~al~~-lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 527 (700)
T 3rim_A 451 IVLHG-PTRAYGGTFLQFS-DYMRPAVRLAALMD-IDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADAN 527 (700)
T ss_dssp HHHHS-SCEEEEEEEGGGG-GGGHHHHHHHHHHT-CCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEECCSSHH
T ss_pred HHHcC-CCEEEEEecHHHH-HHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEEEeCCCHH
Confidence 88884 4999999999994 66777888765555 468888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCc--CCCCcEEEEEeChhHHHHH-H
Q psy2375 666 EVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNE--KSKLKVQLIGSGAILREIL-A 742 (929)
Q Consensus 666 E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~--~~g~dv~Lia~G~~v~~al-A 742 (929)
|++.+|+.|+++... +.|+|||++|.+ .|.++......+.+|.|++++++.. +..+||+||++|++|++|+ |
T Consensus 528 e~~~~l~~Ai~~~~~-~~Pv~ir~~r~~----~~~~~~~~~~~~~~G~~vlr~g~~~~~~~~~dvtiia~G~~v~~al~A 602 (700)
T 3rim_A 528 ETAYAWRTILARRNG-SGPVGLILTRQG----VPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAA 602 (700)
T ss_dssp HHHHHHHHHHTTTTC-SSCEEEECCSSE----ECCCTTCCHHHHHHSCEEEECCSCCCTTCCCSEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CCCEEEEecccc----CCCcCcccccccCCCcEEEecCCccccCCCCCEEEEEechHHHHHHHH
Confidence 999999999998320 034999999865 3544433234566778999886300 0124999999999999999 9
Q ss_pred HHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc-hhHHHHHhhccCC
Q psy2375 743 SKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR-LFAEQVRAFIPKG 821 (929)
Q Consensus 743 Ae~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~-~~~~~i~~~l~~~ 821 (929)
|+.|+++ ||+++|||++|++|||++ +.+|+.++++...+.+|++|++.. | +.+|+.
T Consensus 603 a~~L~~~-Gi~~~VVd~~~i~p~D~~----------------~~~~~~~v~~~~~~~~vtvEe~~~~G----~~~~~~-- 659 (700)
T 3rim_A 603 QTLLADN-DILARVVSMPCLEWFEAQ----------------PYEYRDAVLPPTVSARVAVEAGVAQC----WHQLVG-- 659 (700)
T ss_dssp HHHHHTT-TCCEEEEECSCHHHHHHS----------------CHHHHHHHSCTTCCCEEEECSSCSGG----GHHHHC--
T ss_pred HHHHHhc-CCCeEEEEeccccccCcc----------------cHHHHHHHhcccceEEEEEeCCCchh----HHHHHh--
Confidence 9999998 999999999999999874 357888888752268999999865 3 256776
Q ss_pred CcEEEEecCcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 822 RIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 822 ~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
.....+|+|.||.||++++|+++||||+++|+++++..|
T Consensus 660 ~~~~~igid~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l 698 (700)
T 3rim_A 660 DTGEIVSIEHYGESADHKTLFREYGFTAEAVAAAAERAL 698 (700)
T ss_dssp TTCEEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred cCCcEEccCcCcCcCCHHHHHHHhCcCHHHHHHHHHHHh
Confidence 334689999999999999999999999999999887654
No 3
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=9.3e-100 Score=917.29 Aligned_cols=627 Identities=18% Similarity=0.224 Sum_probs=514.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCC----CCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 75 KIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA----PTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 75 ~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~----p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
+|++.+ +.||+++++||.+|+ +||+|+++|+++++.+||+++++. |+|+++|+||||+||+||++|+++
T Consensus 5 ~~~~~a-~~iR~~~~~~v~~a~------~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l 77 (673)
T 1r9j_A 5 SIEKVA-NCIRCLAADIVQGGK------SGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALL 77 (673)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHT------CSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHcC------CCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHH
Confidence 356655 689999999999998 799999999999999999988873 567889999999999999999999
Q ss_pred HHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCC---CCcEEEEE
Q psy2375 151 FLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT---INRKIWIL 226 (929)
Q Consensus 151 ~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~---~~~~v~~~ 226 (929)
+|+|+ +++++|++|||. ++.++|||++..+| +++++|||||+|+++|+|+|+|.||+.+|+.+++ .+++|||+
T Consensus 78 ~l~G~~~~~~~l~~~r~~--~s~~~ghp~~~~~p-gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~ 154 (673)
T 1r9j_A 78 HMAGYNLTMDDLKGFRQD--GSRTPGHPERFVTP-GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVY 154 (673)
T ss_dssp HHHTCSCCHHHHHTTTST--TCSCCSSCCTTTST-TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEE
T ss_pred HHcCCCCCHHHHHhhccC--CCCCCCCCCCCCCC-CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEE
Confidence 99999 999999999998 56788999998888 4899999999999999999999999887743332 58899999
Q ss_pred EcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCch
Q psy2375 227 CGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306 (929)
Q Consensus 227 ~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~ 306 (929)
+|||+++||++|||+++|++++|+|||||+|||+++|++++... ...++.++|+++||++++++
T Consensus 155 ~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v-------------- 218 (673)
T 1r9j_A 155 CGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLS--FTEQCHQKYVAMGFHVIEVK-------------- 218 (673)
T ss_dssp ECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGT--CCCCHHHHHHHTTCEEEEES--------------
T ss_pred ECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhc--cCHhHHHHHHHCCCeEEEEe--------------
Confidence 99999999999999999999999999999999999999999874 46889999999999999442
Q ss_pred hHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHHHHhCCCCCeEE
Q psy2375 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKMAQKNKDKPTVL 385 (929)
Q Consensus 307 ~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~a~~~~~~P~vI 385 (929)
|| ||+++|++|+++|++.+++|++|
T Consensus 219 ------------------------------------------------------dG~~d~~~l~~Al~~A~~~~~~P~lI 244 (673)
T 1r9j_A 219 ------------------------------------------------------NGDTDYEGLRKALAEAKATKGKPKMI 244 (673)
T ss_dssp ------------------------------------------------------CTTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred ------------------------------------------------------CCCCCHHHHHHHHHHHHHcCCCCEEE
Confidence 99 99999999999998756899999
Q ss_pred EEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHH--------HHHHHh
Q psy2375 386 LIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLK--------NCRKKL 457 (929)
Q Consensus 386 ~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~--------~~~~~l 457 (929)
+++|+||+|++ .++++.+|+. +++.++++.++++++||. ..||++|++....++++. +.++.+
T Consensus 245 ~~~T~kg~G~~--~~~~~~~H~~-~~~~ee~~~~~~~~~~~~------~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~ 315 (673)
T 1r9j_A 245 VQTTTIGFGSS--KQGTEKVHGA-PLGEEDIANIKAKFGRDP------QKKYDVDDDVRAVFRMHIDKCSAEQKAWEELL 315 (673)
T ss_dssp EEECCTTTTST--TTTSGGGTSS-CCCHHHHHHHHHHTTSCS------SCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccc--cCCCcccccC-CCCHHHHHHHHHhcCCCC------cccccCCHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 99999999998 6899999998 899999999999999963 148999876655443321 111222
Q ss_pred CCC---CCcccccccc--cccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCcccc
Q psy2375 458 GGY---LPKRRQKSDE--KLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGL 532 (929)
Q Consensus 458 ~g~---~p~~~~~~~~--~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~ 532 (929)
..+ .|+....+.. .-..|. .|...++.. +++++||+|++++|.++++. +++||++++|++.|+++...
T Consensus 316 ~~~~~~~P~~~~~~~~~~~~~~p~--~~~~~~p~~--~~~~a~r~a~~~~L~~l~~~---~p~vv~~~aDl~~s~~~~~~ 388 (673)
T 1r9j_A 316 AKYTAAFPAEGAAFVAQMRGELPS--GWEAKLPTN--SSAIATRKASENCLAVLFPA---IPALMGGSADLTPSNLTRPA 388 (673)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCCT--TTGGGSCCC--CSCEEHHHHHHHHHHHHHHH---CTTEEEEESSCHHHHTCSCG
T ss_pred HHHHhhChhHHHHHHHHhcCCCCc--hhhhhcccc--ccchHHHHHHHHHHHHHHhh---CCCEEEEecccccccccccc
Confidence 211 1211111000 011221 122222222 35789999999999999988 45579999999988666410
Q ss_pred chhcccccccCcccccCChhhhhHHHh-hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHH
Q psy2375 533 FRQIGIFSQVGQLYDPVDKDQVIYYRE-EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDL 611 (929)
Q Consensus 533 f~~~gi~~~~gq~~~~~d~~~~~~~~e-~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~ 611 (929)
-++.+ .|++ .||+|+||+||+|++|+++ |+ |||++| |++||+.+|++|. .|+.+|
T Consensus 389 ~~~~~------------------~f~~~~~~~R~id~GIaE~~~~~~--a~--GlA~~G-G~~P~~~~~~~F~-~~~~~~ 444 (673)
T 1r9j_A 389 SANLV------------------DFSSSSKEGRYIRFGVREHAMCAI--LN--GLDAHD-GIIPFGGTFLNFI-GYALGA 444 (673)
T ss_dssp GGCCC------------------BCBTTBTTCCEEECCSCHHHHHHH--HH--HHHHHS-SCEEEEEEEGGGG-GGGHHH
T ss_pred Ccccc------------------cccccCCCCCeEecCccHHHHHHH--HH--HHHhcC-CCEEEEEehHHHH-HHHHHH
Confidence 00011 1233 6899999999999998886 44 588996 5999999999994 699999
Q ss_pred HHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 612 AWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 612 i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
+|.++.++. +|++++|++|+++|++|+|||+++|++++|+||||+|++|+|++|++.+++.|++++.+ |+||+++|
T Consensus 445 ir~~a~~~~-pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~---Pv~i~~~r 520 (673)
T 1r9j_A 445 VRLAAISHH-RVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHT---PTVLCLSR 520 (673)
T ss_dssp HHHHHHHTC-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHCTTC---CEEEECCS
T ss_pred HHHHHhcCC-CEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHhCCC---eEEEEEcC
Confidence 999766655 58888999999999999999999999999999999999999999999999999997533 38999998
Q ss_pred CCCCCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchh
Q psy2375 692 MNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 692 ~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~ 770 (929)
.+ .|.++....+.+.+|+|++++++ .+||+||++|++|++|+ ||++|+++ |+++|||++|++|||++.
T Consensus 521 ~~----~~~~~~~~~~~~~~Ga~vl~~g~----~~dv~lia~G~~v~~al~Aa~~L~~~--i~~~Vv~~~sl~pld~~~- 589 (673)
T 1r9j_A 521 QN----TEPQSGSSIEGVRHGAYSVVDVP----DLQLVIVASGSEVSLAVDAAKALSGE--LRVRVVSMPCQELFDAQP- 589 (673)
T ss_dssp SE----ECCCTTCCHHHHHTSCEEEECCT----TCSEEEEECGGGHHHHHHHHHHHTTT--CCEEEEECSCHHHHHTSC-
T ss_pred CC----CCCCCCcccccccCCCEEEeeCC----CCCEEEEEechhHHHHHHHHHHHHhc--CCEEEEeCCCCchhhccc-
Confidence 65 34444432234667899998852 26999999999999999 99999886 999999999999998864
Q ss_pred hhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeh
Q psy2375 771 ETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIH 850 (929)
Q Consensus 771 ~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae 850 (929)
.+|+.++++.+ +++|++|++..+ .+.++++ +. +|+|.||.|+++++|+++||+|++
T Consensus 590 ---------------~~~i~~~~~~~-~~vv~vE~~~~~---g~~~~v~----~~-~g~d~f~~sg~~~~L~~~~g~~~~ 645 (673)
T 1r9j_A 590 ---------------DTYRQAVLPAG-VPVVSVEAYVSF---GWEKYSH----AH-VGMSGFGASAPAGVLYKKFGITVE 645 (673)
T ss_dssp ---------------HHHHHHHSCTT-SCEEEECSSCCT---TGGGTCS----EE-ESCSSCCCSSCHHHHHHHTTCSHH
T ss_pred ---------------HHHHHHHhccC-CeEEEEeCCCcc---chHHhcC----ce-EEeccCCCCCCHHHHHHHHCcCHH
Confidence 46889999887 789999999752 1334444 33 999999999999999999999999
Q ss_pred eeccccccCc
Q psy2375 851 MKKIIKVPNI 860 (929)
Q Consensus 851 ~Iv~~al~~L 860 (929)
.|+++++..|
T Consensus 646 ~I~~~i~~~l 655 (673)
T 1r9j_A 646 EVVRTGRELA 655 (673)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988877
No 4
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=8.7e-100 Score=916.21 Aligned_cols=627 Identities=20% Similarity=0.217 Sum_probs=489.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHHHcCC
Q psy2375 80 LQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAFLEGR 155 (929)
Q Consensus 80 ~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~l~Gr 155 (929)
+.++||+++++||.+|+ |||+|+++|+++|+.+||+++++ +|+|+++|+||||+||+||++||+++|+||
T Consensus 48 ~a~~iR~~~i~~v~~a~------~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 121 (711)
T 3uk1_A 48 MANAIRALAMDAVQQAN------SGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGY 121 (711)
T ss_dssp HHHHHHHHHHHHHHHHT------CSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC------CCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCC
Confidence 34689999999999998 89999999999999999988776 356778999999999999999999999999
Q ss_pred -CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcc---ccCCCCcEEEEEEcCCc
Q psy2375 156 -LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARK---ITNTINRKIWILCGDGE 231 (929)
Q Consensus 156 -~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~---~~~~~~~~v~~~~GDGe 231 (929)
++.++|++|||. ++.+++||.....|+ ++++||+||+|+++|+|+|.|.+++..++ ..+..+++|||++|||+
T Consensus 122 ~~~~~~l~~~r~~--~s~~~ghp~~~~~~g-ve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~ 198 (711)
T 3uk1_A 122 DLPIEELKNFRQL--HSKTPGHPEYGITPG-VETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGC 198 (711)
T ss_dssp SCCHHHHHTTTST--TCSCCSSCCTTTSTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred CCCHHHHHhhccc--cCCCCCCCCCCCCCC-cccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcc
Confidence 999999999998 555688887766675 89999999999999999999999887542 11234789999999999
Q ss_pred cCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHH
Q psy2375 232 MDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKK 311 (929)
Q Consensus 232 ~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~ 311 (929)
++||++|||+++|++++|+|||||+|||.++|++++... ...++.++|+++||++++++
T Consensus 199 l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v------------------- 257 (711)
T 3uk1_A 199 LMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNW--FHDDTPKRFEAYGWNVIPNV------------------- 257 (711)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT--CCCCHHHHHHHTTCEEEEEE-------------------
T ss_pred hhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhh--cCCCHHHHHHHcCCcEEEEe-------------------
Confidence 999999999999999999999999999999999999874 56789999999999999942
Q ss_pred HHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 312 IMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 312 ~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
||||+++|++|+++|++. ++|++|+++|+|
T Consensus 258 -------------------------------------------------dG~d~~~l~~Al~~A~~~-~~P~lI~v~T~k 287 (711)
T 3uk1_A 258 -------------------------------------------------NGHDVDAIDAAIAKAKRS-DKPSLICCKTRI 287 (711)
T ss_dssp -------------------------------------------------ETTCHHHHHHHHHHHTTC-SSCEEEEEEC--
T ss_pred -------------------------------------------------CCCCHHHHHHHHHHHHhC-CCCEEEEEcccc
Confidence 899999999999999874 899999999999
Q ss_pred ccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHH-------HHHHHHhCC---CC
Q psy2375 392 GYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYL-------KNCRKKLGG---YL 461 (929)
Q Consensus 392 G~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~-------~~~~~~l~g---~~ 461 (929)
|+|++. +++...||+. ++++++++..++.++||. .||++|+++...++++ .+.++.++. ..
T Consensus 288 G~G~~~-~e~~~~~Hg~-~l~~e~~~~~~~~l~~~~-------~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~ 358 (711)
T 3uk1_A 288 GNGAAT-KAGGHDVHGA-PLGADEIAKTREALGWTW-------APFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKY 358 (711)
T ss_dssp --------------------CHHHHHHHHHHHTCCC-------CTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCC-CCCcccccCC-CCCHHHHHHHHHHhCCCC-------CCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhC
Confidence 999975 7899999998 899999999999999964 4788887543322211 011112211 11
Q ss_pred Ccccccccc--cccCCC-h-HHHhhhhccc-cccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhc
Q psy2375 462 PKRRQKSDE--KLLIPP-L-EAFKKILEPT-LNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQI 536 (929)
Q Consensus 462 p~~~~~~~~--~l~~P~-~-~~f~~~~~~~-~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~ 536 (929)
|+....+.. ....|. . +.|...+... ..+++++||+||+++|.++++. +++||++++|++.|+++. ++..
T Consensus 359 p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~---~p~vv~~~aDl~~s~~~~--~~~~ 433 (711)
T 3uk1_A 359 PAEAAEFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAV---LPELLGGSADLTGSNLTN--WKAS 433 (711)
T ss_dssp HHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH---CTTEEEEESSCHHHHTCC--CTTC
T ss_pred hhhHHHHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhh---CCCEEEEeccccCcCCcc--cccc
Confidence 211111110 112332 1 1222222110 0245789999999999999988 445699999999876552 1111
Q ss_pred ccccccCcccccCChhhhhHHHhh---cC---CceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHH
Q psy2375 537 GIFSQVGQLYDPVDKDQVIYYREE---KN---GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGD 610 (929)
Q Consensus 537 gi~~~~gq~~~~~d~~~~~~~~e~---~~---gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d 610 (929)
+. |++. || +|+||+||+|++|+++ |+ |+|++| |++||+.+|++| ++|+.+
T Consensus 434 ~~------------------f~~~~~~~p~~~~R~~d~GIaE~~mv~~--Aa--GlA~~~-G~~Pv~~~f~~F-~~~~~~ 489 (711)
T 3uk1_A 434 KA------------------VRANADGPGVQWGNHINYGVREFGMSAA--IN--GLVLHG-GYKPFGGTFLTF-SDYSRN 489 (711)
T ss_dssp CB------------------CEECSSSSSEECCSEEECCSCHHHHHHH--HH--HHHHHS-SCEEEEEEEGGG-HHHHHH
T ss_pred hh------------------hhhhhccCCCCCCcEEEeCccHHHHHHH--HH--HHHHcC-CCEEEEEEhHHH-HHHHHH
Confidence 11 2233 67 9999999999998886 44 588863 399999999999 689999
Q ss_pred HHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe
Q psy2375 611 LAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT 690 (929)
Q Consensus 611 ~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~ 690 (929)
|+|.++.++ .+|++++||+|+++|+||+|||+++|++++|+||||+|++|+|++|++.+|+.|++. ++ |+|||++
T Consensus 490 ~ir~~a~~~-lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~---~~-Pv~ir~~ 564 (711)
T 3uk1_A 490 ALRVAALMK-VPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH---QH-PSCLIFS 564 (711)
T ss_dssp HHHHHHHHT-CCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHS---SS-CEEEECC
T ss_pred HHHHhhhcC-CCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhc---CC-CEEEEee
Confidence 999865555 468888999999999999999999999999999999999999999999999999995 33 3999999
Q ss_pred cCCCCCCCCCCCccc--ccccccceEEEeccCCcCCC----CcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEccccc
Q psy2375 691 VMNENYSHPGLKKGQ--EKGIIKGLYLLKNHNNEKSK----LKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFT 763 (929)
Q Consensus 691 ~~~e~~~~p~~~~~~--~~~i~~G~y~l~~g~~~~~g----~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~ 763 (929)
|.+ .|.++... ...+.+|.|++++.+ | +||+||++|++|++|+ ||++|+++ ||+++|||++|++
T Consensus 565 r~~----~p~~~~~~~~~~~i~~G~~vl~~~~----G~~~~~dvtiia~G~~v~~al~Aa~~L~~~-GI~~~Vid~~si~ 635 (711)
T 3uk1_A 565 RQN----LAFNARTDAQLANVEKGGYVLRDWD----EEIVARKIILIATGSEVELAMKAVEPLAQQ-GIAARVVSMPSSD 635 (711)
T ss_dssp SSE----ECCCCCCHHHHHHGGGSSEEEECCC----SSCCSEEEEEEECTTHHHHHHHHHHHHHHT-TEEEEEEECSCHH
T ss_pred CCC----CCCCCCccccccccCCCeEEEEecC----CCCCCCCEEEEEecHHHHHHHHHHHHHHHc-CCCeEEEecCcCC
Confidence 865 34443321 246778889998621 3 6999999999999999 99999998 9999999999999
Q ss_pred ccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHh
Q psy2375 764 LLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRD 843 (929)
Q Consensus 764 pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~ 843 (929)
|||++. .+|++++++.. .++|++|++... .+.+|++ .+..++|+|+||.||++++|++
T Consensus 636 plD~~~----------------~~~~~sv~~~~-~~~V~vE~~~~~---g~~~~~g--~~~~~iGid~Fg~sg~~~~L~~ 693 (711)
T 3uk1_A 636 VFDRQD----------------AEYRERVLPHG-VRRVAIEAGVTD---FWRKYVG--LEGGVVGIDTFGESAPAGVLFK 693 (711)
T ss_dssp HHHTSC----------------HHHHHHHSCTT-SCEEEECSSCSG---GGHHHHT--TTSEEECCCSCCCSSCHHHHHH
T ss_pred ccchhH----------------HHHHHHhhccC-CeEEEEeCCccc---cHHHHhC--CCceEEEeCCCcCcCCHHHHHH
Confidence 999874 35888888776 579999998642 2566766 4567899999999999999999
Q ss_pred hhcceeheeccccccCc
Q psy2375 844 FFENIIHMKKIIKVPNI 860 (929)
Q Consensus 844 ~fgldae~Iv~~al~~L 860 (929)
+||+|+++|+++++..|
T Consensus 694 ~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 694 HFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HTTCSHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHh
Confidence 99999999999877543
No 5
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.9e-97 Score=892.63 Aligned_cols=629 Identities=19% Similarity=0.239 Sum_probs=498.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHHHc
Q psy2375 78 EHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAFLE 153 (929)
Q Consensus 78 ~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~l~ 153 (929)
+.+.+.||+++++||.+|+ |||+|+++|+++|+.+||+++++ +|+|+++|+||||+||+||++||+++|+
T Consensus 7 ~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~ 80 (663)
T 3kom_A 7 REFSNAIRFLSIDATLKAK------SGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLT 80 (663)
T ss_dssp HHHHHHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC------CCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHh
Confidence 4455789999999999998 79999999999999999988776 3567789999999999999999999999
Q ss_pred CC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc---cCCCCcEEEEEEcC
Q psy2375 154 GR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI---TNTINRKIWILCGD 229 (929)
Q Consensus 154 Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~---~~~~~~~v~~~~GD 229 (929)
|| ++.++|++|||. ++.+++||.+...|+ ++++|||||+|+++|+|+|.|.+++..+.. .+..+++|||++||
T Consensus 81 G~~~~~~~l~~~r~~--~s~~~ghp~~~~~~g-ve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GD 157 (663)
T 3kom_A 81 GYDLSIEDIKNFRQL--HSKTPGHPEYGYTPG-VETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGD 157 (663)
T ss_dssp TCSCCHHHHTTTTST--TCSCCSSCCTTTSTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECH
T ss_pred CCCCCHHHHHhhccC--CCCCCCCCCCCCCCC-cccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECc
Confidence 99 999999999997 455678988777785 899999999999999999999998765411 12237899999999
Q ss_pred CccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE-EEecccchhhhhhcCchhH
Q psy2375 230 GEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI-KVIWSSSWDKLLKCDQNGI 308 (929)
Q Consensus 230 Ge~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~~~~ 308 (929)
|+++||++|||+++|++++|+|||+|+|||.++|++++... ...++.++|+++||+++ .|
T Consensus 158 G~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v----------------- 218 (663)
T 3kom_A 158 GCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGW--FSDNTPERFRAYGWHVIENV----------------- 218 (663)
T ss_dssp HHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGT--CCCCHHHHHHHTTCEEEEEE-----------------
T ss_pred hhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhh--cchhHHHHHHHCCCeEEEEE-----------------
Confidence 99999999999999999999999999999999999999873 56789999999999999 66
Q ss_pred HHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEe
Q psy2375 309 LKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIK 388 (929)
Q Consensus 309 l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~ 388 (929)
||||+++|++|+++|++..++|++|+++
T Consensus 219 ----------------------------------------------------dG~d~~~l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 219 ----------------------------------------------------DGHDFVAIEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp ----------------------------------------------------ETTCHHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred ----------------------------------------------------cCCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 8999999999999999855899999999
Q ss_pred eecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHH------H-HHHHHHhCCCC
Q psy2375 389 SIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQY------L-KNCRKKLGGYL 461 (929)
Q Consensus 389 T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~------~-~~~~~~l~g~~ 461 (929)
|+||+|+++ .|+++.+|+. ++++++++..++.++|+. .||..|.+....++. . .+..+.+..+.
T Consensus 247 T~kg~G~~~-~e~~~~~Hg~-~l~~e~~~~~~~~l~~~~-------~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 317 (663)
T 3kom_A 247 TVIGFGSPE-KAGTASVHGS-PLSDQERASAAKELNWDY-------QAFEIPQDVYKYWDAREKGQALEANWQGQRNLFK 317 (663)
T ss_dssp CCTTTTCTT-TTTCSSTTSS-CCCHHHHHHHHHHTTCCC-------CTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccCC-CCCCccccCC-CCCHHHHHHHHHHcCCCC-------CCccCChhHHHHHHHHhhcchhhHHHHHHHHHhh
Confidence 999999997 6899999997 899999999999999863 378877542110000 0 01111111111
Q ss_pred --Ccccccccc--cccCCC-h-HHHhhhhcc-ccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccch
Q psy2375 462 --PKRRQKSDE--KLLIPP-L-EAFKKILEP-TLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFR 534 (929)
Q Consensus 462 --p~~~~~~~~--~l~~P~-~-~~f~~~~~~-~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~ 534 (929)
| ....+.. .-..|+ . ..|...+.. ...+++++||.|++++|.++++. ++++|++++|++.|.+.. |+
T Consensus 318 ~~p-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~---~p~vv~~~aDl~~s~~~~--~~ 391 (663)
T 3kom_A 318 DSP-KFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKN---MPEMFGGSADLTGSNNTN--WS 391 (663)
T ss_dssp TST-THHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHH---CTTEEEEECCC--CCSCC--CT
T ss_pred cch-HHHHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhh---CCCEEEEecccCCCCCcc--cc
Confidence 2 1111110 112232 1 112111110 00245789999999999999887 444699999999875542 22
Q ss_pred hcccccccCcccccCChhhhhHH-HhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHH
Q psy2375 535 QIGIFSQVGQLYDPVDKDQVIYY-REEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAW 613 (929)
Q Consensus 535 ~~gi~~~~gq~~~~~d~~~~~~~-~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~ 613 (929)
..+ .| ++.||+|+||+||+|++|+++ |+ |+|++| |++||+.+|++| ++|+.+|++
T Consensus 392 ~~~------------------~f~~~~~p~R~~d~GIaE~~~v~~--a~--GlA~~g-G~~P~~~tf~~F-~~~~~~~ir 447 (663)
T 3kom_A 392 GSV------------------WLNNTQEGANYLSYGVREFGMAAI--MN--GLSLYG-GIKPYGGTFLVF-SDYSRNAIR 447 (663)
T ss_dssp TCC------------------BTTTCSTTCCEEECCSCHHHHHHH--HH--HHHHHS-SCEEEEEEEGGG-HHHHHHHHH
T ss_pred ccc------------------ccccccCCCCeEecCccHHHHHHH--HH--HHHHcC-CCEEEEEehHHH-HHHHHHHHH
Confidence 111 12 366899999999999998886 44 588884 499999999999 688999998
Q ss_pred HhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCC
Q psy2375 614 LAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMN 693 (929)
Q Consensus 614 ~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~ 693 (929)
.++.++ .++++++|++|+++|+||+|||+++|++++|++|||+|++|+|++|++.+++.|+++..+ |+|||++|.+
T Consensus 448 ~~a~~~-lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~~~---Pv~ir~~r~~ 523 (663)
T 3kom_A 448 MSALMK-QPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDT---PSVMVLTRQN 523 (663)
T ss_dssp HHHHTT-CCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHHHHHHCSSC---CEEEECCSSE
T ss_pred HHHhcC-CCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhCCC---CEEEEccCcc
Confidence 865554 568888999999999999999999999999999999999999999999999999984333 3899998864
Q ss_pred CCCCCCCCCccc--ccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchh
Q psy2375 694 ENYSHPGLKKGQ--EKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQ 770 (929)
Q Consensus 694 e~~~~p~~~~~~--~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~ 770 (929)
.|.++... ...+.+|.|++++++ ++||+||++|++|++|+ ||++|+++ ||+++|||++|++|||++.
T Consensus 524 ----~p~~~~~~~~~~~~~~G~~vl~~~~----g~dvtiia~G~~v~~al~Aa~~L~~~-Gi~~~Vi~~~si~p~D~~~- 593 (663)
T 3kom_A 524 ----LMPVVQTQHQVANIARGGYLVKDNP----DAKLTIVATGSEVELAVKVANEFEKK-GIKLNVASIPCVEVFATQA- 593 (663)
T ss_dssp ----ECCCCCCHHHHHHHTTTCEEEECCT----TCSCEEEECTTHHHHHHHHHHHHHHT-TCCCEEEECSCHHHHHTSC-
T ss_pred ----CCCcCccccchhcccCceEEEEecC----CCCEEEEEecHHHHHHHHHHHHHHhc-CCCeEEEEcCcCCcccccH-
Confidence 35444321 235778899998742 46999999999999999 99999998 9999999999999999874
Q ss_pred hhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeh
Q psy2375 771 ETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIH 850 (929)
Q Consensus 771 ~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae 850 (929)
.+|++++++.. .++|++|++.. ..+..++. |....++|+|.||.||+.++|+++||+|++
T Consensus 594 ---------------~~~~~~vl~~~-~~~v~vE~~~~---~g~~~~~g-G~~~~~igid~Fg~sg~~~~l~~~~Glt~e 653 (663)
T 3kom_A 594 ---------------HEYKKTVIKDD-IPAVFVEMAQP---DMWYKYMP-KAGGEVKGIYSFGESAPAEDLFKRFGFTVE 653 (663)
T ss_dssp ---------------HHHHHHHSCTT-SCEEEECSSCC---GGGGGGCC-TTCEEEECCCSCCCSSCHHHHHHHHTCSHH
T ss_pred ---------------HHHHHHhcCCC-CeEEEEecCCc---ccHHHHhc-ccCCcEEEecCCcCCCCHHHHHHHHCcCHH
Confidence 36888888776 58999999743 23445554 123467999999999999999999999999
Q ss_pred eeccccccC
Q psy2375 851 MKKIIKVPN 859 (929)
Q Consensus 851 ~Iv~~al~~ 859 (929)
+|+++++..
T Consensus 654 ~I~~~~~~~ 662 (663)
T 3kom_A 654 NISNIVAKY 662 (663)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhh
Confidence 999988764
No 6
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.3e-97 Score=899.53 Aligned_cols=642 Identities=19% Similarity=0.215 Sum_probs=515.1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCc
Q psy2375 67 DDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHS 142 (929)
Q Consensus 67 ~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ 142 (929)
+-+..+.++|++++ ++||+++++||.+|+ |||+|+++|+++|+.+||+++++ +|+|+++|+||||+||+
T Consensus 7 ~~~~l~~~~l~~~a-~~iR~~~~~~v~~a~------~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~ 79 (675)
T 1itz_A 7 QGKAATGELLEKSV-NTIRFLAIDAVEKAN------SGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHG 79 (675)
T ss_dssp ---CCCHHHHHHHH-HHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGG
T ss_pred ccCCCCHHHHHHHH-HHHHHHHHHHHHHcC------CCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcch
Confidence 34567788999876 689999999999998 89999999999999999987766 35677899999999999
Q ss_pred hHHHHHHHHHcCC--CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccC---
Q psy2375 143 APGVYARAFLEGR--LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITN--- 217 (929)
Q Consensus 143 ap~~Ya~~~l~Gr--~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~--- 217 (929)
||++|++++|+|+ +++++|++|||. ++.++|||++.++| ++.+.|||||+|+++|+|+|+|.||+.+|+.++
T Consensus 80 ~~~lYa~l~l~G~~~~~~~~l~~~r~~--~~~~~ghp~~~~~~-~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~ 156 (675)
T 1itz_A 80 CMLQYALLHLAGYDSVKEEDLKQFRQW--GSRTPGHPENFETP-GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSE 156 (675)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHTTTTST--TCSSCSSCCTTTCT-TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHHHHcCCCCCCHHHHHhcccC--CCCCCCCCCCCCCC-CeeECCccHHhHHHHHHHHHHHhhhhcccccccccC
Confidence 9999999999999 999999999998 44569999998888 489999999999999999999999988664322
Q ss_pred CCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccch
Q psy2375 218 TINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSW 297 (929)
Q Consensus 218 ~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~ 297 (929)
..+++|||++|||+++||++|||+++|++++|+|||||+|||.++|++++... ...++..+|+++||+++.++
T Consensus 157 ~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v----- 229 (675)
T 1itz_A 157 IVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIA--FTEDVSTRFEALGWHTIWVK----- 229 (675)
T ss_dssp CCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT--CCSCHHHHHHHTTCEEEEES-----
T ss_pred CCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhh--cChhHHHHHHhCCCEEEEEe-----
Confidence 25789999999999999999999999999999999999999999999999873 46789999999999999432
Q ss_pred hhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC-cHHHHHHHHHHHH
Q psy2375 298 DKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH-DLRKIYSAFKMAQ 376 (929)
Q Consensus 298 d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh-D~~~v~~a~~~a~ 376 (929)
||| |+++|++|+++|+
T Consensus 230 ---------------------------------------------------------------dG~~d~~~l~~al~~a~ 246 (675)
T 1itz_A 230 ---------------------------------------------------------------NGNTGYDDIRAAIKEAK 246 (675)
T ss_dssp ---------------------------------------------------------------CTTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cCCCCHHHHHHHHHHHH
Confidence 899 9999999999998
Q ss_pred hCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHH-------
Q psy2375 377 KNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQY------- 449 (929)
Q Consensus 377 ~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~------- 449 (929)
+..++|++|+++|+||+|+++ .+++..+|+. +++.++++.++++++|+. .||+.|.+....++.
T Consensus 247 ~~~~~P~lI~~~T~kg~G~~~-~~~~~~~H~~-~~~~e~~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~~~g~~ 317 (675)
T 1itz_A 247 AVTDKPTLIKVTTTIGFGSPN-KANSYSVHGS-ALGAKEVEATRQNLGWPY-------DTFFVPEDVKSHWSRHTPEGAA 317 (675)
T ss_dssp HCCSSCEEEEEECCTTTTCTT-TTTSGGGTSS-CCCHHHHHHHHHHHTCCC-------CTTCCCHHHHHHHTTHHHHHHH
T ss_pred HCCCCeEEEEEeeecccCccc-ccCcccccCC-CCCHHHHHHHHHHcCCCc-------ccccCChhHHHHHHHHHhhhhh
Confidence 755899999999999999997 5889999998 899999999999999963 378776542211000
Q ss_pred -HHHHHHHhCCC---CCcccccccc--cccCCChHHHhhhhccc-cccCcccHHHHHHHHHHHHHhccCCCCceeeeecC
Q psy2375 450 -LKNCRKKLGGY---LPKRRQKSDE--KLLIPPLEAFKKILEPT-LNERKISTTYAYVRILNTILRDKNIGNRVVPILVD 522 (929)
Q Consensus 450 -~~~~~~~l~g~---~p~~~~~~~~--~l~~P~~~~f~~~~~~~-~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD 522 (929)
..+..+.++.+ .|+....+.. .-..|. .|...++.. ..+++++||++++++|..+++. +++|+++++|
T Consensus 318 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~---~p~v~~~~aD 392 (675)
T 1itz_A 318 LEADWNAKFAEYEKKYADDAATLKSIITGELPT--GWVDALPKYTPESPGDATRNLSQQCLNALANV---VPGLIGGSAD 392 (675)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHCCCCT--TGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHH---CTTEEEEESS
T ss_pred hHHHHHHHHHHhhhhChHHHHHHHHHhcccCCc--hhhhhhhhhccCCcchHHHHHHHHHHHHHHHh---CCCEEEEecc
Confidence 00111112111 1110000000 001111 121111111 1245789999999999999888 4456999999
Q ss_pred CCCCcCccccchhcccccccCcccccCChhhhhHHHh-hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh
Q psy2375 523 ESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYRE-EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS 601 (929)
Q Consensus 523 ~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e-~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys 601 (929)
++.++++.. +.. ..|++ .||+|+||+||+|++|+++ |+ |||++|.+++||+.+|+
T Consensus 393 l~~s~~~~~--~g~------------------~~f~~~~~~~R~id~gIaE~~~v~~--a~--GlA~~G~~~~P~~~t~~ 448 (675)
T 1itz_A 393 LASSNMTLL--KMF------------------GDFQKDTAEERNVRFGVREHGMGAI--CN--GIALHSPGFVPYCATFF 448 (675)
T ss_dssp CHHHHTCCC--TTC------------------CBCCTTCTTCCBCCCCSCHHHHHHH--HH--HHHTTCTTCEEEEEEEG
T ss_pred ccccccccc--ccc------------------ccccccCCCCCeEeecccHHHHHHH--HH--HHHhcCCCCEEEEEEHH
Confidence 998766531 000 01333 6899999999999998886 44 58999877999999999
Q ss_pred hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCC
Q psy2375 602 MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISN 681 (929)
Q Consensus 602 ~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~ 681 (929)
+|. .|+.+++|.++.++. +|++++|++|+++|++|+|||+++|++++|++|||+|++|+|++|++.+++.|++++.+
T Consensus 449 ~F~-~~~~~~ir~~a~~~l-pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~- 525 (675)
T 1itz_A 449 VFT-DYMRGAMRISALSEA-GVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKR- 525 (675)
T ss_dssp GGH-HHHHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCTTS-
T ss_pred HHH-HHHHHHHHHHHhcCC-CEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHhCCC-
Confidence 995 588899998776666 58888899999999999999999999999999999999999999999999999997533
Q ss_pred CceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcc
Q psy2375 682 QEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSAT 760 (929)
Q Consensus 682 ~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~ 760 (929)
|+|||++|.+ .|.++....+.+..|+|++++... +..+||+||++|++|++|+ ||++|+++ ||+++|||++
T Consensus 526 --Pv~i~~~r~~----~p~~~~~~~~~~~~Ga~vl~~~~~-G~~~dv~iva~G~~v~~al~Aa~~L~~~-Gi~v~Vv~~~ 597 (675)
T 1itz_A 526 --PSILALSRQK----LPHLPGTSIEGVEKGGYTISDNST-GNKPDLIVMGTGSELEIAAKAADELRKE-GKTVRVVSFV 597 (675)
T ss_dssp --CEEEEECSSC----BCCCTTCCHHHHTTSSEEEEECCS-TTCCSEEEEECGGGHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred --cEEEEecCCC----CCCCCCccccccccCCEEEecccC-CCCCCEEEEEECHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 3999999864 355544322346678899987210 0026999999999999999 99999998 9999999999
Q ss_pred cccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhh
Q psy2375 761 SFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKK 840 (929)
Q Consensus 761 s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~ 840 (929)
|++|||++. .+|+.++++.+.+++|++|+++.+ .+.+|+. .+..++|+|.||.|+++++
T Consensus 598 ~~~pld~~~----------------~~~~~~v~~~~~~~vv~vE~~~~~---G~~~~~~--~~~~~ig~d~fg~sg~~~~ 656 (675)
T 1itz_A 598 SWELFDEQS----------------DEYKESVLPAAVTARISIEAGSTL---GWQKYVG--AQGKAIGIDKFGASAPAGT 656 (675)
T ss_dssp CHHHHHTSC----------------HHHHHHHSCTTCCCEEEECSSCCT---TTHHHHC--SSCEEECCCSCCCSSCHHH
T ss_pred cCcccccch----------------HHHHHHHhccCCceEEEEECCccc---cHHHhcC--CCceEEEeCCCCCCCCHHH
Confidence 999998863 368888987743689999999762 2345665 4567899999999999999
Q ss_pred HHhhhcceeheecccccc
Q psy2375 841 LRDFFENIIHMKKIIKVP 858 (929)
Q Consensus 841 L~~~fgldae~Iv~~al~ 858 (929)
|+++||+|+++|+++++.
T Consensus 657 l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 657 IYKEYGITVESIIAAAKS 674 (675)
T ss_dssp HHHHHTCSHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHHh
Confidence 999999999999987754
No 7
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=3.9e-97 Score=891.56 Aligned_cols=623 Identities=19% Similarity=0.234 Sum_probs=506.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHH
Q psy2375 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYA 148 (929)
Q Consensus 73 ~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya 148 (929)
..+|++++.+.||+++++||.+|+ +||+|+++|+++|+.+||.++|+ +|+|+++|+||||+||+||++|+
T Consensus 26 ~~~l~~~a~~~iR~~~~~~v~~a~------~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa 99 (690)
T 3m49_A 26 SHSIEQLSINTIRTLSIDAIEKAN------SGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYS 99 (690)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------CCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHH
Confidence 356889997789999999999998 79999999999999999987877 36777899999999999999999
Q ss_pred HHHHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc---cCCCCcEEE
Q psy2375 149 RAFLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI---TNTINRKIW 224 (929)
Q Consensus 149 ~~~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~---~~~~~~~v~ 224 (929)
+++|+|| ++.++|++|||. ++-++|||.+.++|+ +++.|||||+|++.|+|+|+|.|++..+.. .+..+++||
T Consensus 100 ~l~l~G~~~~~~~l~~~rq~--gs~~~Ghp~~~~~pg-v~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~ 176 (690)
T 3m49_A 100 LLHLSGYDVTMDDLKNFRQW--GSKTPGHPEYGHTAG-VDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTY 176 (690)
T ss_dssp HHHHTTSSCCHHHHTTTTCT--TCSSCSSCCTTTSTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEE
T ss_pred HHHHHCCCCCHHHHHhhccC--CCCCCCCCCCCCCCc-cccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEE
Confidence 9999999 999999999997 455679999888885 899999999999999999999998775421 123478999
Q ss_pred EEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcC
Q psy2375 225 ILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCD 304 (929)
Q Consensus 225 ~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~ 304 (929)
|++|||+++||++|||+++|++++|+|||+|+|||.++|++++... ...++.++|+++||+++.|+
T Consensus 177 ~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~v~------------ 242 (690)
T 3m49_A 177 AICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRS--FSESVEDRYKAYGWQVIRVE------------ 242 (690)
T ss_dssp EEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGT--CCCCHHHHHHHHTCEEEEES------------
T ss_pred EEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhc--cchhHHHHHHHcCCcEEEEe------------
Confidence 9999999999999999999999999999999999999999999763 56789999999999999984
Q ss_pred chhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeE
Q psy2375 305 QNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTV 384 (929)
Q Consensus 305 ~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~v 384 (929)
||||+++|++|+++|++..++|++
T Consensus 243 --------------------------------------------------------DG~d~~~l~~Al~~a~~~~~~P~l 266 (690)
T 3m49_A 243 --------------------------------------------------------DGNDIEAIAKAIEEAKADEKRPTL 266 (690)
T ss_dssp --------------------------------------------------------CTTCHHHHHHHHHHHHHCCSSCEE
T ss_pred --------------------------------------------------------cCCCHHHHHHHHHHHHhcCCCCEE
Confidence 899999999999999985589999
Q ss_pred EEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHH-------------HHH
Q psy2375 385 LLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQ-------------YLK 451 (929)
Q Consensus 385 I~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~-------------~~~ 451 (929)
|+|+|+||+|++. ++++..||+. ++++++++..++.++|+.. .||+.|.+....++ |..
T Consensus 267 I~v~T~kG~G~~~-~~~~~~~Hg~-~~~~e~~~~~~~~l~~~~~------~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~ 338 (690)
T 3m49_A 267 IEVRTTIGFGSPN-KSGKSASHGS-PLGVEETKLTKEAYAWTAE------QDFHVAEEVYENFRKTVQDVGETAQAEWNT 338 (690)
T ss_dssp EEEECCTTTTCTT-TTTSGGGTSS-CCCHHHHHHHHHHTTCCCC------STTCCCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEeecccccCc-ccCcccccCC-CCCHHHHHHHHHHhCCCCC------CCCcCChhHHHHHHHHHhhhcchhhHHHHH
Confidence 9999999999975 8999999998 8999999999999999642 36888765322111 100
Q ss_pred --------------HHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCcee
Q psy2375 452 --------------NCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVV 517 (929)
Q Consensus 452 --------------~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv 517 (929)
+..+.+.+.+|..+ ...++....+++++||.+++.+|.++++. +++||
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~lp~~~---------------~~~~~~~~~~~~~a~R~a~g~~L~~~~~~---~p~vv 400 (690)
T 3m49_A 339 MLGEYAQAYPELANELQAAMNGLLPEGW---------------EQNLPTYELGSKAATRNSSGAVINAIAES---VPSFF 400 (690)
T ss_dssp HHHHHHHHSHHHHHHHHHHHTTCCCTTG---------------GGGCCCCCTTCEEEHHHHHHHHHHHHHHH---CTTEE
T ss_pred HHHHHHHhCHHHHHHHHHHhcccCchhh---------------hhhccccccccchHHHHHHHHHHHHHHhh---CCCEE
Confidence 00111223333221 11111111235789999999999999988 44569
Q ss_pred eeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEE
Q psy2375 518 PILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF 597 (929)
Q Consensus 518 ~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~ 597 (929)
++++|++.++++. ++.++- +.++.+|+|+||+||+||+|+++ |+ |+|++| |++||+
T Consensus 401 ~~~aDl~~s~~~~--~~~~~~-----------------f~~~~~~~R~~d~GIaE~~mv~~--A~--GlA~~g-G~~P~~ 456 (690)
T 3m49_A 401 GGSADLAGSNKTY--MNNEKD-----------------FTRDDYSGKNIWYGVREFAMGAA--MN--GIALHG-GLKTYG 456 (690)
T ss_dssp EEESSCHHHHTCC--CTTSCB-----------------CBTTBTTCCEEECCSCHHHHHHH--HH--HHHHHS-SCEEEE
T ss_pred EEeCcccccCCcc--cccccc-----------------chhhcCCCceEEcCchHHHHHHH--HH--HHHHcC-CCEEEE
Confidence 9999999876542 221221 12355789999999999998886 44 588884 499999
Q ss_pred EeehhhH-HHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHh
Q psy2375 598 TFYSMFG-LQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLH 676 (929)
Q Consensus 598 ~~ys~F~-~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~ 676 (929)
.+|.+|. |.|. +++..+.++ .+|++++|++|+++|+||+|||+++|++++|+||||+|++|+|++|++.+|+.|++
T Consensus 457 ~tf~~Fs~f~~~--air~~al~~-lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~ 533 (690)
T 3m49_A 457 GTFFVFSDYLRP--AIRLAALMQ-LPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALE 533 (690)
T ss_dssp EEEGGGGGGGHH--HHHHHHHHT-CCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHH--HHHHHHhcC-CCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHH
Confidence 9998886 3343 367655555 56888899999999999999999999999999999999999999999999999998
Q ss_pred hccCCCceEEEEEecCCCCCCCCCCCccc---ccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCC
Q psy2375 677 CMISNQEDVFYYITVMNENYSHPGLKKGQ---EKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDI 752 (929)
Q Consensus 677 ~~~g~~~~v~~rl~~~~e~~~~p~~~~~~---~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI 752 (929)
+..+ |+|||++|.+ .|.++... ...+.+|.|++++++. ..+||+||++|++|++|+ ||+.|+++ ||
T Consensus 534 ~~~~---Pv~ir~~R~~----~p~~~~~~~~~~~~~~~G~~vlr~g~~--g~~dvtiia~G~~v~~Al~Aa~~L~~~-GI 603 (690)
T 3m49_A 534 STNK---PTALVLTRQD----LPTLEGAKDDTYEKVAKGAYVVSASKK--ETADVILLATGSEVSLAVEAQKALAVD-GV 603 (690)
T ss_dssp CSSS---CEEEECCSSE----EECCHHHHTTHHHHHHTSCEEEECCSS--SSCSEEEEECTTHHHHHHHHHHHHHHT-TC
T ss_pred cCCC---CEEEEeeccc----CCCCCccccccccccCCCeEEEEecCC--CCCCEEEEEechHHHHHHHHHHHHHhc-CC
Confidence 7433 4999999865 34443321 2356778899988620 024999999999999999 99999998 99
Q ss_pred ceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc-hhHHHHHhhccCCCcEEEEecCc
Q psy2375 753 DSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR-LFAEQVRAFIPKGRIYKVLGTDG 831 (929)
Q Consensus 753 ~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~-~~~~~i~~~l~~~~~~~~lG~d~ 831 (929)
+++|||++|++|||++ +++|+.++++...+.+|++|++.. | +.+|+. .....+|+|.
T Consensus 604 ~~~Vid~~~i~p~D~~----------------d~~~~~~v~~~~~~~~v~vEe~~~~G----~~~~~~--~~~~~igid~ 661 (690)
T 3m49_A 604 DASVVSMPSMDRFEAQ----------------TAEYKESVLPKAVTKRFAIEMGATFG----WHRYVG--LEGDVLGIDT 661 (690)
T ss_dssp CEEEEECSCHHHHHTS----------------CHHHHHHHSCTTCCCEEEECSSCCTT----THHHHT--TTCEEECCCS
T ss_pred CeEEEecccCCcCccc----------------cHHHHHHHhhccCCeEEEEECCchhh----HHHHhc--cCCCEEccCc
Confidence 9999999999999763 357888888432268999999965 4 356766 3345799999
Q ss_pred ccccCChhhHHhhhcceeheeccccccC
Q psy2375 832 FGCSDTRKKLRDFFENIIHMKKIIKVPN 859 (929)
Q Consensus 832 Fg~sgs~~~L~~~fgldae~Iv~~al~~ 859 (929)
||.||+.++|+++||||+++|+++++..
T Consensus 662 Fg~sg~~~~l~~~~Glt~e~I~~~i~~~ 689 (690)
T 3m49_A 662 FGASAPGEKIMEEYGFTVENVVRKVKEM 689 (690)
T ss_dssp CCCSSCHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 9999999999999999999999887654
No 8
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=6.8e-97 Score=893.08 Aligned_cols=630 Identities=21% Similarity=0.244 Sum_probs=509.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHHH
Q psy2375 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARAF 151 (929)
Q Consensus 76 l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~~ 151 (929)
|++++ ++||+++++||.+|+ +||+|+++|+++|+.+||+++++ +|+|+++|+||||+||+||++||+++
T Consensus 4 ~~~~a-~~iR~~~~~~v~~a~------~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~ 76 (669)
T 2r8o_A 4 RKELA-NAIRALSMDAVQKAK------SGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLH 76 (669)
T ss_dssp HHHHH-HHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHcC------CCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHH
Confidence 55655 689999999999998 79999999999999999977655 36777899999999999999999999
Q ss_pred HcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccc---cCCCCcEEEEEE
Q psy2375 152 LEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKI---TNTINRKIWILC 227 (929)
Q Consensus 152 l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~---~~~~~~~v~~~~ 227 (929)
|+|| ++.++|++|||. ++-++|||.+...|+ +.+.+|+||+|++.|+|+|.+.+++.++.. .+..+++|||++
T Consensus 77 l~G~~~~~~~l~~~r~~--~~~~~ghp~~~~~~g-~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~ 153 (669)
T 2r8o_A 77 LTGYDLPMEELKNFRQL--HSKTPGHPEVGYTAG-VETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFM 153 (669)
T ss_dssp HHTCSCCHHHHTTTTST--TCSCCSSCCTTTSTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEE
T ss_pred HcCCCCCHHHHHHhhcC--CCCCCCCCCccCCCC-cccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEE
Confidence 9999 999999999998 444589998877785 799999999999999999999998765421 122478999999
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE-EEecccchhhhhhcCch
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI-KVIWSSSWDKLLKCDQN 306 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~~ 306 (929)
|||+++||++|||+++|++++|+|||||+|||+++|++++... ...++.++|+++||+++ .|
T Consensus 154 GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v--------------- 216 (669)
T 2r8o_A 154 GDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGW--FTDDTAMRFEAYGWHVIRDI--------------- 216 (669)
T ss_dssp CHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT--CCCCHHHHHHHTTCEEEEEE---------------
T ss_pred CHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEeccccccc--cCccHHHHHHHCCCeEEeEE---------------
Confidence 9999999999999999999999999999999999999998852 46789999999999999 66
Q ss_pred hHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEE
Q psy2375 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLL 386 (929)
Q Consensus 307 ~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~ 386 (929)
||||+++|++|+++|++..++|++|+
T Consensus 217 ------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P~lI~ 242 (669)
T 2r8o_A 217 ------------------------------------------------------DGHDAASIKRAVEEARAVTDKPSLLM 242 (669)
T ss_dssp ------------------------------------------------------ETTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 89999999999999988558999999
Q ss_pred EeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHH-------HHHHHHhCC
Q psy2375 387 IKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYL-------KNCRKKLGG 459 (929)
Q Consensus 387 ~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~-------~~~~~~l~g 459 (929)
++|+||+|+++ .+++..+|+. +++++++++++++++||. .||+.|.+..+.++.+ .+..+.++.
T Consensus 243 ~~T~kg~G~~~-~~~~~~~H~~-~~~~ee~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (669)
T 2r8o_A 243 CKTIIGFGSPN-KAGTHDSHGA-PLGDAEIALTREQLGWKY-------APFEIPSEIYAQWDAKEAGQAKESAWNEKFAA 313 (669)
T ss_dssp EECCTTTTCTT-TTTSGGGTSS-CCCHHHHHHHHHHHTCCC-------CTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred EEeEeccCcCC-cCCCCcccCC-CCCHHHHHHHHHHcCCCc-------ccccCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999997 6888999998 899999999999999862 3688775433221110 011111211
Q ss_pred ---CCCccccccccc--ccCCCh-----HHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCc
Q psy2375 460 ---YLPKRRQKSDEK--LLIPPL-----EAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGM 529 (929)
Q Consensus 460 ---~~p~~~~~~~~~--l~~P~~-----~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl 529 (929)
..|+....+... -.+|+. ..|...+.. .+++++||++|+++|.++++. +++|+.+++|++.++++
T Consensus 314 ~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~--~~~~~~~r~a~~~~L~~l~~~---~p~v~~~~aDl~~s~~~ 388 (669)
T 2r8o_A 314 YAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQA--NPAKIASRKASQNAIEAFGPL---LPEFLGGSADLAPSNLT 388 (669)
T ss_dssp HHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHH--SCCCEEHHHHHHHHHHHHTTT---CTTEEEEESSCHHHHTC
T ss_pred HhhhChHHHHHHHHHhcccCChhhhhhhHHHhhhhcC--CCccHHHHHHHHHHHHHHHhh---CCCeEEecCcccccccc
Confidence 223222111100 023321 122111111 235789999999999999987 44569999999987665
Q ss_pred cccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHH
Q psy2375 530 EGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIG 609 (929)
Q Consensus 530 ~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~ 609 (929)
. ++.++ .|++.||+|+||+||+|++|+++ | .|||++| |++||+.+|++| +.|+.
T Consensus 389 ~--~~~~~------------------~f~~~~p~R~id~GIaE~~~v~~--a--~GlA~~g-G~~P~~~tf~~F-~~~~~ 442 (669)
T 2r8o_A 389 L--WSGSK------------------AINEDAAGNYIHYGVREFGMTAI--A--NGISLHG-GFLPYTSTFLMF-VEYAR 442 (669)
T ss_dssp C--CTTCC------------------BTTTCTTCSEEECCSCHHHHHHH--H--HHHHHHS-SCEEEEEEEGGG-GGTTH
T ss_pred c--ccccc------------------cccccCCCCeeecchhHHHHHHH--H--HHHHHcC-CCeEEEeehHHH-HHHHH
Confidence 3 22222 23456899999999999998876 4 4588995 599999999999 56999
Q ss_pred HHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEE
Q psy2375 610 DLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYI 689 (929)
Q Consensus 610 d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl 689 (929)
+|++.++.++. ++++++|++|+++|++|+|||+++|++++|++|||+|++|+|++|++.+++.|++.+++| +|||+
T Consensus 443 ~~ir~~a~~~l-pvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~~~P---v~i~~ 518 (669)
T 2r8o_A 443 NAVRMAALMKQ-RQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGP---TALIL 518 (669)
T ss_dssp HHHHHHHHTTC-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSC---EEEEC
T ss_pred HHHHHHHhcCC-CEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCc---EEEEe
Confidence 99988665555 688889999999999999999999999999999999999999999999999999975444 99999
Q ss_pred ecCCCCCCCCCCCccc--ccccccceEEEeccCCcCCC-CcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEccccccc
Q psy2375 690 TVMNENYSHPGLKKGQ--EKGIIKGLYLLKNHNNEKSK-LKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLL 765 (929)
Q Consensus 690 ~~~~e~~~~p~~~~~~--~~~i~~G~y~l~~g~~~~~g-~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pL 765 (929)
+|.+ .|.++... .+.+..|+|++++.. | +||+||++|++|++|+ ||++|+++ ||+++|||++|++||
T Consensus 519 ~r~~----~~~~~~~~~~~~~~~~G~~vl~~~~----g~~dv~iva~G~~v~~al~Aa~~L~~~-Gi~~~Vv~~~~~~pl 589 (669)
T 2r8o_A 519 SRQN----LAQQERTEEQLANIARGGYVLKDCA----GQPELIFIATGSEVELAVAAYEKLTAE-GVKARVVSMPSTDAF 589 (669)
T ss_dssp CSSE----ECCCCCCHHHHHHGGGSCEEEECCS----SSCSEEEEECGGGHHHHHHHHHHHHHH-TCCEEEEECSCHHHH
T ss_pred CCCC----CCCCCCccchhhhccCCCEEEeccC----CCCCEEEEEECHHHHHHHHHHHHHHhc-CCCeEEEEeccCCcc
Confidence 9864 34444322 123566889998721 2 6999999999999999 99999998 999999999999999
Q ss_pred ccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhh
Q psy2375 766 ARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFF 845 (929)
Q Consensus 766 d~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~f 845 (929)
|++. .+|+.++++.+.+++|++|++... .+.+|+. .+..++|+|+||.||++++|+++|
T Consensus 590 d~~~----------------~~~~~~v~~~~~~~vv~vE~~~~~---g~~~~~~--~~~~~ig~d~fg~sg~~~~l~~~~ 648 (669)
T 2r8o_A 590 DKQD----------------AAYRESVLPKAVTARVAVEAGIAD---YWYKYVG--LNGAIVGMTTFGESAPAELLFEEF 648 (669)
T ss_dssp HTSC----------------HHHHHHHSCTTCCCEEEEEEEEGG---GGHHHHT--TSSEEEEECSCCCSSCHHHHHHHT
T ss_pred ccch----------------HHHHHHhccccCceEEEEeCCchh---hHHHHhc--CCCeEEEcCCCCCcCCHHHHHHHh
Confidence 8863 468888887743689999999752 2456776 344679999999999999999999
Q ss_pred cceeheeccccccCc
Q psy2375 846 ENIIHMKKIIKVPNI 860 (929)
Q Consensus 846 gldae~Iv~~al~~L 860 (929)
|||+++|+++++..|
T Consensus 649 Gl~~~~I~~~~~~~~ 663 (669)
T 2r8o_A 649 GFTVDNVVAKAKELL 663 (669)
T ss_dssp TCSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988776
No 9
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1.7e-96 Score=879.42 Aligned_cols=613 Identities=22% Similarity=0.303 Sum_probs=496.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHH
Q psy2375 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYA 148 (929)
Q Consensus 73 ~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya 148 (929)
.++|++++ ++||+++++||.+|+ |||+|+++|+++|+.+| +++|+ +|+|+++|+||||+||+||++|+
T Consensus 3 ~~~l~~~a-~~iR~~~i~~v~~a~------~GH~g~~lg~~ei~~~L-~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa 74 (632)
T 3l84_A 3 IQILQEQA-NTLRFLSADMVQKAN------SGHPGAPLGLADILSVL-SYHLKHNPKNPTWLNRDRLVFSGGHASALLYS 74 (632)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHH-TTTCCCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcC------CCCCCcChhHHHHHHHH-HHHhCcCCCCCCCCCCCEEEEcCCcccHHHHH
Confidence 35677766 689999999999998 79999999999999999 66776 35677899999999999999999
Q ss_pred HHHHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEE
Q psy2375 149 RAFLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILC 227 (929)
Q Consensus 149 ~~~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~ 227 (929)
+++|+|| ++.++|++|||. ++.++|||.+ .+|+ +.+.|||||+|++.|+|+|.|.+++..+...+..+++|||++
T Consensus 75 ~l~l~G~~~~~~~l~~~r~~--~s~~~ghp~~-~~~g-~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~ 150 (632)
T 3l84_A 75 FLHLSGYDLSLEDLKNFRQL--HSKTPGHPEI-STLG-VEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLC 150 (632)
T ss_dssp HHHHHTCSCCHHHHTTTTCT--TCSSCSSCCT-TSTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEE
T ss_pred HHHHhCCCCCHHHHHHHhcC--CCCCCCCCCC-CCCC-cccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEE
Confidence 9999999 999999999997 4455799998 7785 899999999999999999999998766532344588999999
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchh
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNG 307 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~ 307 (929)
|||+++||++|||+++|++++|+|||+|+|||.++|++++... ...++..+|+++||+++.|
T Consensus 151 GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~v---------------- 212 (632)
T 3l84_A 151 GDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLA--FNENVKMRFEAQGFEVLSI---------------- 212 (632)
T ss_dssp EHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT--CCCCHHHHHHHTTCEEEEE----------------
T ss_pred CCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhh--cChhHHHHHHHcCCeEEEE----------------
Confidence 9999999999999999999999999999999999999999873 5678999999999999977
Q ss_pred HHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEE
Q psy2375 308 ILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLI 387 (929)
Q Consensus 308 ~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~ 387 (929)
||||+++|++|+++|++ .++|++|++
T Consensus 213 -----------------------------------------------------dGhd~~~l~~al~~A~~-~~~P~lI~v 238 (632)
T 3l84_A 213 -----------------------------------------------------NGHDYEEINKALEQAKK-STKPCLIIA 238 (632)
T ss_dssp -----------------------------------------------------ETTCHHHHHHHHHHHHT-CSSCEEEEE
T ss_pred -----------------------------------------------------eeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 89999999999999988 489999999
Q ss_pred eeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHH--------HHHhC-
Q psy2375 388 KSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNC--------RKKLG- 458 (929)
Q Consensus 388 ~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~--------~~~l~- 458 (929)
+|+||+|+++ .++...||+. ++++++++..++.++|+.. .||..|++....++-..++ .+.+.
T Consensus 239 ~T~kG~G~~~-~e~~~~~Hg~-~l~~e~~~~~~~~l~~~~~------~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~ 310 (632)
T 3l84_A 239 KTTIAKGAGE-LEGSHKSHGA-PLGEEVIKKAKEQAGFDPN------ISFHIPQASKIRFESAVELGDLEEAKWKDKLEK 310 (632)
T ss_dssp ECCTTTTCGG-GTTCGGGSSS-CCCHHHHHHHHHHHTCCTT------CCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred eeEeeecCCC-CCCcccccCC-CCCHHHHHHHHHHhCCCCC------CCccCChHHHHHHHHHHhhcchhHHHHHHHhhc
Confidence 9999999997 7889999998 8999999999999999521 3788765432221100011 11111
Q ss_pred CCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhccc
Q psy2375 459 GYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGI 538 (929)
Q Consensus 459 g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi 538 (929)
...|+.... + .|. .|...++....+.+++||.++++.|.++++. .+++|++++|++.|++.. |+
T Consensus 311 ~~~p~~~~~----~-~p~--~~~~~~~~~~~~~~~a~r~a~~~~l~~l~~~---~p~~v~~~aDl~~s~~~~--~~---- 374 (632)
T 3l84_A 311 SAKKELLER----L-LNP--DFNKIAYPDFKGKDLATRDSNGEILNVLAKN---LEGFLGGSADLGPSNKTE--LH---- 374 (632)
T ss_dssp SSCHHHHHH----H-HSC--CSTTCCCCCCTTCCBCHHHHHHHHHHHHHHH---CTTEEEEESSCHHHHTCC--CT----
T ss_pred ccCchhhhh----h-Ccc--chhhhcchhccccchHHHHHHHHHHHHHHhh---CCCEEEEecccCCccCcc--hh----
Confidence 011111000 0 111 1111111110124689999999999999887 334599999998875442 10
Q ss_pred ccccCcccccCChhhhhHHHhhc-CCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhh
Q psy2375 539 FSQVGQLYDPVDKDQVIYYREEK-NGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGD 617 (929)
Q Consensus 539 ~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~ 617 (929)
..+.| |+|+||+||+||+|+++ |+ |+|++| |++||+.+|++| ++|+.+|++..+.
T Consensus 375 ------------------~~~~f~p~R~~d~GIaE~~~v~~--a~--GlA~~g-G~~P~~~~f~~F-~~~~~~~ir~~a~ 430 (632)
T 3l84_A 375 ------------------SMGDFVEGKNIHFGIREHAMAAI--NN--AFARYG-IFLPFSATFFIF-SEYLKPAARIAAL 430 (632)
T ss_dssp ------------------TSCBTTTSSEEECCSCHHHHHHH--HH--HHHHHS-SCEEEEEEEGGG-HHHHHHHHHHHHH
T ss_pred ------------------cccccCCCCeEEeCccHHHHHHH--HH--HHHHcC-CCEEEEEecHHH-HHHHHHHHHHHhc
Confidence 11345 89999999999998886 44 588884 499999999999 6899999988655
Q ss_pred hcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q psy2375 618 IRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYS 697 (929)
Q Consensus 618 ~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~ 697 (929)
++ .+|++++|++|+++|+||+|||+++|++++|+||||+|++|+|++|++.+++.|++. ++ |+|||++|.+.
T Consensus 431 ~~-~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~~---~~-Pv~ir~~r~~~--- 502 (632)
T 3l84_A 431 MK-IKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNA---DI-PSAFVLSRQKL--- 502 (632)
T ss_dssp HT-CCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHHC---SS-CEEEECCSSCB---
T ss_pred cC-CCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CC-CEEEEEcCCCC---
Confidence 55 468888999999999999999999999999999999999999999999999999985 33 38999988642
Q ss_pred CCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhh
Q psy2375 698 HPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWN 776 (929)
Q Consensus 698 ~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~ 776 (929)
+|.. ......+.+|.|++++++ |+||+||++|++|++|+ ||+.|+++ ||+++|||++|++|||++.
T Consensus 503 ~~~~-~~~~~~~~~g~~vl~~~~----g~dvtiia~G~~v~~al~Aa~~L~~~-Gi~~~Vi~~~~i~PlD~~~------- 569 (632)
T 3l84_A 503 KALN-EPVFGDVKNGAYLLKESK----EAKFTLLASGSEVWLCLESANELEKQ-GFACNVVSMPCFELFEKQD------- 569 (632)
T ss_dssp CCCC-CCSBCCGGGSSEEEECCT----TCSEEEEECGGGHHHHHHHHHHHHHT-TCCEEEEECSBHHHHHTSC-------
T ss_pred CCCc-cccccccccccEEEEecC----CCCEEEEEechHHHHHHHHHHHHHhc-CCCeEEEecCcCCCcchhH-------
Confidence 2211 112245778889998842 47999999999999999 99999998 9999999999999999863
Q ss_pred ccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceeheecccc
Q psy2375 777 MLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIK 856 (929)
Q Consensus 777 ~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~a 856 (929)
.+|++++++ +.||++|+|... .+..+++ .++|+|.||.||+.++|+++||||+++|++++
T Consensus 570 ---------~~~~~sv~~---~~vv~vE~~~~~---g~~~~~~-----~~iGid~Fg~sg~~~~l~~~~Glt~~~I~~~i 629 (632)
T 3l84_A 570 ---------KAYQERLLK---GEVIGVEAAHSN---ELYKFCH-----KVYGIESFGESGKDKDVFERFGFSVSKLVNFI 629 (632)
T ss_dssp ---------HHHHHHHCC---SEEEEECSSCCG---GGGGTCS-----EEECCCSCCCSSCHHHHHHHTTCSHHHHHHHH
T ss_pred ---------HHHHHHhcC---CCEEEEeCChhh---hHHHHhC-----eEEEcCCCcccCCHHHHHHHhCcCHHHHHHHH
Confidence 357777876 368999999652 1223332 67999999999999999999999999999877
Q ss_pred cc
Q psy2375 857 VP 858 (929)
Q Consensus 857 l~ 858 (929)
+.
T Consensus 630 ~~ 631 (632)
T 3l84_A 630 LS 631 (632)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-96 Score=883.16 Aligned_cols=623 Identities=21% Similarity=0.255 Sum_probs=506.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 75 KIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 75 ~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
++++++.+.||+++++||.+|+ |||+|+++|+++|+.+||+++++ +|+|+++|+||||+||+||++|+++
T Consensus 6 ~~~~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l 79 (651)
T 2e6k_A 6 DLETLSVNAIRFLAIDAVEKAR------SGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVL 79 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcC------CCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHH
Confidence 6777777899999999999998 89999999999999999987766 3567789999999999999999999
Q ss_pred HHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCC---CCcEEEEE
Q psy2375 151 FLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT---INRKIWIL 226 (929)
Q Consensus 151 ~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~---~~~~v~~~ 226 (929)
+|+|+ ++.++|.+|||. ++.++|||++.++|+ +.+.+|+||+|++.|+|+|+|.+++.+|+.+++ .+++|||+
T Consensus 80 ~l~G~~~~~~~l~~~r~~--~~~~~ghp~~~~~~g-~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~ 156 (651)
T 2e6k_A 80 HLTGYDLPLEELKSFRQW--GSKTPGHPERGHTPG-VEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVL 156 (651)
T ss_dssp HHTTCSCCHHHHTTTTST--TCSCCSSCCBTTBTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEE
T ss_pred HHhCCCCCHHHHHHhhcc--CCCCCCCCCCCCCCC-eeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 99999 999999999998 445589999888884 899999999999999999999999876643222 57899999
Q ss_pred EcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE-EEecccchhhhhhcCc
Q psy2375 227 CGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI-KVIWSSSWDKLLKCDQ 305 (929)
Q Consensus 227 ~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~ 305 (929)
+|||+++||++|||+++|++++|+|||||+|||.++|++++... ...++.++|+++||+++ .|
T Consensus 157 ~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v-------------- 220 (651)
T 2e6k_A 157 ASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLA--FTEDVLARYRAYGWQTLRVE-------------- 220 (651)
T ss_dssp ECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGT--CCSCHHHHHHHTTCEEEEES--------------
T ss_pred EChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcccccccccc--cCccHHHHHHhCCCeEEEEe--------------
Confidence 99999999999999999999999999999999999999999874 46789999999999999 54
Q ss_pred hhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEE
Q psy2375 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVL 385 (929)
Q Consensus 306 ~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI 385 (929)
||||+++|++|+++|++ .++|++|
T Consensus 221 -------------------------------------------------------dG~d~~~l~~al~~a~~-~~~P~lI 244 (651)
T 2e6k_A 221 -------------------------------------------------------DVNDLEALRKAIKLAKL-DERPTLI 244 (651)
T ss_dssp -------------------------------------------------------CTTCHHHHHHHHHHHHH-SSSCEEE
T ss_pred -------------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCEEE
Confidence 89999999999999988 4899999
Q ss_pred EEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHH-------HHHHHHHHhC
Q psy2375 386 LIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQ-------YLKNCRKKLG 458 (929)
Q Consensus 386 ~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~-------~~~~~~~~l~ 458 (929)
+++|+||+|++ .+++..+|+. +++++++++++++++||. .||+.|.+....++ ...+..+.++
T Consensus 245 ~~~t~kg~G~~--~~~~~~~H~~-~~~~~e~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (651)
T 2e6k_A 245 AVRSHIGFGSP--KQDSAKAHGE-PLGPEAVEATRRNLGWPY-------PPFVVPEEVYRHMDMREKGRAWQEAWEKALE 314 (651)
T ss_dssp EEECCTTTTST--TTTSGGGTSS-CCHHHHHHHHHHHHTCCC-------CTTCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred EEEeEeccccc--cccccccccc-CCCHHHHHHHHHHcCCCc-------ccccCChHHHHHHHHhhhchhhHHHHHHHHH
Confidence 99999999998 6888999998 889999999999998862 37877654321100 0001111121
Q ss_pred CCC---Ccccccccc--cccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccc
Q psy2375 459 GYL---PKRRQKSDE--KLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLF 533 (929)
Q Consensus 459 g~~---p~~~~~~~~--~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f 533 (929)
.+. |+....+.. ....|+ |...++.. +++++||++|+++|.++++. +++++++++|++.++++..
T Consensus 315 ~~~~~~p~~~~~~~~~~~~~~p~---~~~~~~~~--~~~~~~r~a~~~~L~~~~~~---~p~~~~~~aDl~~s~~~~~-- 384 (651)
T 2e6k_A 315 AYARAYPDLHQELMRRLRGELPP---LPEEPPSF--DKPIATRAASGRALNLLAPR---LPELLGGSADLTPSNNTKA-- 384 (651)
T ss_dssp HHHHHCHHHHHHHHHHHTTCCCC---CCCSCCCC--CSCBCHHHHHHHHHHHHGGG---CTTEEEEESSCHHHHTCSC--
T ss_pred HhhhhChHHHHHHHHHhcCcCCc---hhhhcccc--CccHHHHHHHHHHHHHHHhh---CCCEEEEeCcccccccccc--
Confidence 111 110000000 011221 11111111 34689999999999999988 4557999999998876631
Q ss_pred hhcccccccCcccccCChhhhhHHHh-hcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHH
Q psy2375 534 RQIGIFSQVGQLYDPVDKDQVIYYRE-EKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLA 612 (929)
Q Consensus 534 ~~~gi~~~~gq~~~~~d~~~~~~~~e-~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i 612 (929)
+.++ .|++ .||+|+||+||+|++|+++ |+ |||++| +++||+.+|++|. .|+.+++
T Consensus 385 ~~~~------------------~f~~~~~p~R~i~~gIaE~~~~~~--a~--GlA~~G-g~~P~~~t~~~F~-~~~~~ai 440 (651)
T 2e6k_A 385 EGME------------------DFSRANPLGRYLHFGVREHAMGAI--LN--GLNLHG-GYRAYGGTFLVFS-DYMRPAI 440 (651)
T ss_dssp TTCC------------------BCBTTBTTCCEEECCSCHHHHHHH--HH--HHHHHS-SCEEEEEEEGGGG-GGSHHHH
T ss_pred cccc------------------ccCccCCCCceEecCcCHHHHHHH--HH--HHHHcC-CCEEEEEeHHHHH-HHHHHHH
Confidence 1111 1333 6899999999999998886 44 588887 6999999999994 5888888
Q ss_pred HHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 613 WLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 613 ~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
+..+.++. ++++++|++|+++|++|+|||+++|++++|++|||+|++|+|++|++.+++.|++.+.+ |+||++++.
T Consensus 441 r~~a~~~l-pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~---Pv~i~~~r~ 516 (651)
T 2e6k_A 441 RLAALMGV-PTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEG---PTALVLTRQ 516 (651)
T ss_dssp HHHHHHTC-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSS---CEEEECCSS
T ss_pred HHHHhcCC-CEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCC---CEEEEEeCC
Confidence 88666665 57788899999999999999999999999999999999999999999999999997533 399999876
Q ss_pred CCCCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhh
Q psy2375 693 NENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQE 771 (929)
Q Consensus 693 ~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~ 771 (929)
+ .|.++......+.+|+|++++++ ++||+||++|+++++|+ ||++|+++ ||+++|||++|++|||++.
T Consensus 517 ~----~~~~~~~~~~~~~~G~~vl~~g~----~~dv~iva~G~~v~~al~Aa~~L~~~-Gi~~~Vv~~~~~~p~d~~~-- 585 (651)
T 2e6k_A 517 A----VPLLSPEKARGLLRGGYVLEDVE----EPQGVLVATGSEVHLALRAQALLREK-GVRVRVVSLPSFELFAAQP-- 585 (651)
T ss_dssp C----BCCCCHHHHGGGGGSSEEEECCS----SCSEEEEECTTHHHHHHHHHHHHHHT-TCCEEEEECSCHHHHHTSC--
T ss_pred C----CCCCCcchhhhhcCCCEEEeeCC----CCCEEEEEECHHHHHHHHHHHHHHhc-CCcEEEEecCcCCcccccc--
Confidence 4 35554432235677889998853 36999999999999999 99999998 9999999999999998863
Q ss_pred hhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCcccccCChhhHHhhhcceehe
Q psy2375 772 TERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFFENIIHM 851 (929)
Q Consensus 772 ~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~sgs~~~L~~~fgldae~ 851 (929)
.+|+.++++.+ +++|++|+++.+ + +.+++ + .++|+|.|+.||++++|+++||+|+++
T Consensus 586 --------------~~~~~~v~~~~-~~vv~vE~~~~~-G--~~~~v----~-~~ig~d~f~~sg~~~~l~~~~gl~~~~ 642 (651)
T 2e6k_A 586 --------------EAYRKEVLPPG-LPVVAVEAGASL-G--WERYA----H-KVVALDRFGASAPYPEVYERLGFTPER 642 (651)
T ss_dssp --------------HHHHHHHSCTT-SCEEEECSSCCT-T--GGGTC----S-EEECCCSCCCSCCTTHHHHHTTCCHHH
T ss_pred --------------HHHHHHHhCcC-CeEEEEeCCccC-c--hHHhC----C-CEEEeCCCCCCCCHHHHHHHhCCCHHH
Confidence 46888998876 689999999752 1 22333 2 679999999999999999999999999
Q ss_pred eccccccCc
Q psy2375 852 KKIIKVPNI 860 (929)
Q Consensus 852 Iv~~al~~L 860 (929)
|+++++..+
T Consensus 643 I~~~i~~~l 651 (651)
T 2e6k_A 643 VAEAFLSLV 651 (651)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhC
Confidence 999887653
No 11
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.5e-93 Score=864.83 Aligned_cols=621 Identities=20% Similarity=0.267 Sum_probs=500.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 75 KIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 75 ~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
+|++++.++||+++++||.+|+ +||+|+++|+++|+.+||.+ ++ +|+|+++|+||||+||+||++|+++
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~~i~~~L~~~-~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~ 78 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKAN------SGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLYSML 78 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------CSCCHHHHHHHHHHHHHHHT-CCCCTTCTTCTTCCEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------CCccCCchhHHHHHHHHHHh-CCCCccCCCCCCCCEEEEecchHHHHHHHHH
Confidence 6777344789999999999998 79999999999999999975 43 4778899999999999999999999
Q ss_pred HHcCC-CCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhcccc---CCCCcEEEEE
Q psy2375 151 FLEGR-LTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKIT---NTINRKIWIL 226 (929)
Q Consensus 151 ~l~Gr-~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~---~~~~~~v~~~ 226 (929)
+|+|+ ++.++|++|||. ++-++|||.+ ..|+ +.+.+|+||+|++.|+|+|.|.+++.++... +..+++|||+
T Consensus 79 ~l~G~~~~~~~l~~~r~~--g~~~~ghp~~-~~~g-~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i 154 (680)
T 1gpu_A 79 HLTGYDLSIEDLKQFRQL--GSRTPGHPEF-ELPG-VEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVF 154 (680)
T ss_dssp HHTTCSCCHHHHTTTTCT--TCSCCSSCCT-TSTT-CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEE
T ss_pred HHhCCCCCHHHHHhhccc--CCCCCCCCCc-cCCC-eeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEE
Confidence 99999 999999999998 4445899998 6775 7999999999999999999999987654211 1247899999
Q ss_pred EcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE-EEecccchhhhhhcCc
Q psy2375 227 CGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI-KVIWSSSWDKLLKCDQ 305 (929)
Q Consensus 227 ~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~ 305 (929)
+|||+++||++|||+++|++++|+|||||+|||.++|++++... ...++.++|+++||+++ .|
T Consensus 155 ~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~--~~~d~~~~~~a~G~~~~~~v-------------- 218 (680)
T 1gpu_A 155 LGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSIS--FDEDVAKRYEAYGWEVLYVE-------------- 218 (680)
T ss_dssp ECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT--CCCCHHHHHHHHTCEEEEES--------------
T ss_pred ECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEecccccc--cCccHHHHHHhcCCeEEEEe--------------
Confidence 99999999999999999999999999999999999999998753 46789999999999999 54
Q ss_pred hhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC-cHHHHHHHHHHHHhCCCCCeE
Q psy2375 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH-DLRKIYSAFKMAQKNKDKPTV 384 (929)
Q Consensus 306 ~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh-D~~~v~~a~~~a~~~~~~P~v 384 (929)
||| |+++|++|+++|++..++|++
T Consensus 219 -------------------------------------------------------dG~~d~~~l~~al~~A~~~~~~P~l 243 (680)
T 1gpu_A 219 -------------------------------------------------------NGNEDLAGIAKAIAQAKLSKDKPTL 243 (680)
T ss_dssp -------------------------------------------------------CTTTCHHHHHHHHHHHHHCTTSCEE
T ss_pred -------------------------------------------------------cCCCCHHHHHHHHHHHHHCCCCCEE
Confidence 899 999999999999885589999
Q ss_pred EEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHH-------------HHH
Q psy2375 385 LLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQ-------------YLK 451 (929)
Q Consensus 385 I~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~-------------~~~ 451 (929)
|+++|+||+|++ .++...+|+. +++++++++++++++|+. ..||..|.+....++ |-.
T Consensus 244 I~~~T~kg~G~~--~~~~~~~H~~-~~~~ee~~~~~~~~~~~~------~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (680)
T 1gpu_A 244 IKMTTTIGYGSL--HAGSHSVHGA-PLKADDVKQLKSKFGFNP------DKSFVVPQEVYDHYQKTILKPGVEANNKWNK 314 (680)
T ss_dssp EEEECCTTTTST--TTTSGGGSSS-CCCHHHHHHHHHHTTCCT------TCCSCCCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEeecccccc--cCCCCccCCC-CCCHHHHHHHHHHcCCCc------CCCccCCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999998 5888899998 899999999999999863 146777654321111 100
Q ss_pred --------------HHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCcee
Q psy2375 452 --------------NCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVV 517 (929)
Q Consensus 452 --------------~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv 517 (929)
+..+.+.+.+|..+.. ..|. |. . .+++++||++++++|.++++. +++|+
T Consensus 315 ~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~-----~~~~---~~-----~-~~~~~a~r~a~~~~L~~~~~~---~p~v~ 377 (680)
T 1gpu_A 315 LFSEYQKKFPELGAELARRLSGQLPANWES-----KLPT---YT-----A-KDSAVATRKLSETVLEDVYNQ---LPELI 377 (680)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCCCTTGGG-----GSCC---CC-----T-TSCCBCHHHHHHHHHHHHTTT---CTTEE
T ss_pred HHHHHHhhChHHHHHHHHHhcccCCchhhh-----hchh---hc-----c-CCcchHHHHHHHHHHHHHHhh---CCCEE
Confidence 0011122333322110 1111 10 1 235689999999999999987 45569
Q ss_pred eeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCce-EE
Q psy2375 518 PILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMI-PF 596 (929)
Q Consensus 518 ~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~i-Pf 596 (929)
++++|++.++++. .+.++.| ...+ .+.+.||+|+||+||+|++|+++ |+ |||++| +++ ||
T Consensus 378 ~~~aDl~~s~~~~--~~g~~~f-------~~~~-----~~~~~~p~R~~d~gIaE~~~vg~--a~--GlA~~G-g~~~P~ 438 (680)
T 1gpu_A 378 GGSADLTPSNLTR--WKEALDF-------QPPS-----SGSGNYSGRYIRYGIREHAMGAI--MN--GISAFG-ANYKPY 438 (680)
T ss_dssp EEESSCHHHHTCS--CTTCCEE-------CCTT-----TSSEETTCCEEECCSCHHHHHHH--HH--HHHHHC-TTCEEE
T ss_pred EEecccccccccc--ccccccc-------cccc-----ccccCCCCceecCCccHHHHHHH--HH--HHHhcC-CCceEE
Confidence 9999999876653 1111112 1110 01236899999999999998886 44 588887 688 99
Q ss_pred EEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHh
Q psy2375 597 FTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLH 676 (929)
Q Consensus 597 ~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~ 676 (929)
+.+|++|. .|+.++++..+.++. +|++++|++|+++|++|+|||+++|++++|+||||+|++|+|++|++.+++.|++
T Consensus 439 ~~~f~~F~-~~~~~air~~a~~~l-pvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~ 516 (680)
T 1gpu_A 439 GGTFLNFV-SYAAGAVRLSALSGH-PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLE 516 (680)
T ss_dssp EEEEHHHH-GGGHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHH
T ss_pred EeehHHHH-HHHHHHHHHHHhcCC-CEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHH
Confidence 99999995 589999988655555 6888899999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEEEecCCCCCCCCCCCcccccccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceE
Q psy2375 677 CMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSA 755 (929)
Q Consensus 677 ~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~ 755 (929)
...+ |+|||++|.+ .|.++......+..|+|++++++ .+||+||++|++|++|+ ||++|+++ ||+++
T Consensus 517 ~~~~---Pv~i~~~r~~----~~~~~~~~~~~~~~G~~vl~~g~----~~dvtiva~G~~v~~al~Aa~~L~~~-Gi~~~ 584 (680)
T 1gpu_A 517 SKHT---PSIIALSRQN----LPQLEGSSIESASKGGYVLQDVA----NPDIILVATGSEVSLSVEAAKTLAAK-NIKAR 584 (680)
T ss_dssp CSSC---CEEEECCSSC----BCCCTTCCHHHHTTSCEEEECCS----SCSEEEEECTHHHHHHHHHHHHHHTT-TCCEE
T ss_pred hCCC---cEEEEecCCC----CCCCCCcchhhccCCCEEEecCC----CCCEEEEEEcHHHHHHHHHHHHHHhc-CCCEE
Confidence 7433 3999999864 35554332233566889999852 26999999999999999 99999998 99999
Q ss_pred EEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCCCcEEEEecCccccc
Q psy2375 756 VWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCS 835 (929)
Q Consensus 756 Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~~~~~~lG~d~Fg~s 835 (929)
|||++|++|||++. .+|+.++++.+ ..+|++|++..+ .+.++++ . . +|+|.||.|
T Consensus 585 Vvd~~~l~pld~~~----------------~~~~~sv~~~~-~~~v~vE~~~~~---g~~~~v~--~--~-~gv~~f~~~ 639 (680)
T 1gpu_A 585 VVSLPDFFTFDKQP----------------LEYRLSVLPDN-VPIMSVEVLATT---CWGKYAH--Q--S-FGIDRFGAS 639 (680)
T ss_dssp EEECSCHHHHHHSC----------------HHHHHHHSCSS-SCEEEECSSCST---TGGGTCS--E--E-ECCCSCCCC
T ss_pred EEEcCCCCcchhhh----------------HHHHHHHhccC-CceEEEeCCccc---cHHHhcC--c--c-eeeCcCCCC
Confidence 99999999998863 36888888764 244999999652 2334444 2 2 899999999
Q ss_pred CChhhHHhhhcceeheeccccccCcC
Q psy2375 836 DTRKKLRDFFENIIHMKKIIKVPNIG 861 (929)
Q Consensus 836 gs~~~L~~~fgldae~Iv~~al~~LG 861 (929)
++.++|+++||+|++.|+++++..+.
T Consensus 640 g~~~~l~~~~gl~~~~I~~~i~~~l~ 665 (680)
T 1gpu_A 640 GKAPEVFKFFGFTPEGVAERAQKTIA 665 (680)
T ss_dssp SCHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999888773
No 12
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=9.1e-90 Score=822.79 Aligned_cols=597 Identities=21% Similarity=0.287 Sum_probs=484.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcC----CCCCCCCCcEEEeCCCchHHHH
Q psy2375 72 GNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQGHSAPGVY 147 (929)
Q Consensus 72 ~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~----~p~~~~~dd~i~~~GH~ap~~Y 147 (929)
+.++|++++ ++||.++++||.+++ +||+|+++|+++|+.+||.++++ +|+|+++|+||||+||+||++|
T Consensus 9 ~~~~l~~~a-~~iR~~~i~~~~~~~------~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 9 KLQALKDTA-NRLRISSIQATTAAG------SGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHT------CSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHHHhcC------CCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 357788877 689999999999998 79999999999999999987765 4667889999999999999999
Q ss_pred HHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEE
Q psy2375 148 ARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILC 227 (929)
Q Consensus 148 a~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~ 227 (929)
++++|+|+++.++|.+|||. +++++|||.|.+ |+ .++.|||||+|++.|+|+|.|.+++ +..+++|||++
T Consensus 82 ~~~~l~G~~~~~~l~~~r~~--~s~l~ghp~~~~-~~-~d~~~G~lG~gl~~A~G~AlA~~~~------~~~~~~vv~v~ 151 (616)
T 3mos_A 82 AVWAEAGFLAEAELLNLRKI--SSDLDGHPVPKQ-AF-TDVATGSLGQGLGAACGMAYTGKYF------DKASYRVYCLL 151 (616)
T ss_dssp HHHHHTTSSCGGGGGGTTCT--TCSCCSSCCTTS-TT-CSSCCCSTTCHHHHHHHHHHHHHHT------SCCSCCEEEEE
T ss_pred HHHHHcCCCCHHHHHHhccC--CCCCCCCCCCCC-Cc-ccccccccCCccHHHHHHHHHHHHh------CCCCCEEEEEE
Confidence 99999999999999999998 569999999875 76 5789999999999999999887763 34568999999
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchh
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNG 307 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~ 307 (929)
|||+++||++|||+++|++++|+|||+|+|||.+++++++... ....++.++|+++||+++.|
T Consensus 152 GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~-~~~~~~~~~~~a~G~~~~~V---------------- 214 (616)
T 3mos_A 152 GDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQ-HQMDIYQKRCEAFGWHAIIV---------------- 214 (616)
T ss_dssp ETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTT-TCHHHHHHHHHHTTCEEEEE----------------
T ss_pred CccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccc-cChHHHHHHHHHcCCeEEEE----------------
Confidence 9999999999999999999999999999999999999998763 33577899999999999987
Q ss_pred HHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEE
Q psy2375 308 ILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLI 387 (929)
Q Consensus 308 ~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~ 387 (929)
||||+++|++|++++ +++|++|++
T Consensus 215 -----------------------------------------------------dG~d~~~l~~al~~~---~~~P~lI~v 238 (616)
T 3mos_A 215 -----------------------------------------------------DGHSVEELCKAFGQA---KHQPTAIIA 238 (616)
T ss_dssp -----------------------------------------------------ETTCHHHHHHHHHSC---CSSCEEEEE
T ss_pred -----------------------------------------------------cCCCHHHHHHHHHhc---CCCCEEEEE
Confidence 899999999999765 479999999
Q ss_pred eeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHhCCCCCccccc
Q psy2375 388 KSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQK 467 (929)
Q Consensus 388 ~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~~~~~l~g~~p~~~~~ 467 (929)
+|+||+|++. .++...||+. +++.++++..++.+...+...+ ...|-. +.+... ...
T Consensus 239 ~T~kg~G~~~-~e~~~~~Hg~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~----------------~~~--- 295 (616)
T 3mos_A 239 KTFKGRGITG-VEDKESWHGK-PLPKNMAEQIIQEIYSQIQSKK-KILATP-PQEDAP----------------SVD--- 295 (616)
T ss_dssp ECCTTTTSTT-TTTCSSCTTC-CCCHHHHHHHHHHHHHTCCCCC-CCCCBC-CCCCCC----------------CCC---
T ss_pred EEeccccccc-ccCchhhcCC-CCCHHHHHHHHHHHHHHHHhhh-hhCcCc-cchhhh----------------hhh---
Confidence 9999999975 7888999997 8998888776654421110000 000000 000000 000
Q ss_pred ccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccc
Q psy2375 468 SDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYD 547 (929)
Q Consensus 468 ~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~ 547 (929)
.. ....|....| + .+.+++||++|+++|.++++. +++||++++|++.+++++
T Consensus 296 ~~-~~~~~~~~~~------~-~~~~~a~r~a~~~~L~~l~~~---d~~vv~~~aD~~~~~~~~----------------- 347 (616)
T 3mos_A 296 IA-NIRMPSLPSY------K-VGDKIATRKAYGQALAKLGHA---SDRIIALDGDTKNSTFSE----------------- 347 (616)
T ss_dssp CS-CCCCSSCCCC------C-TTCBCCHHHHHHHHHHHHHHH---CTTEEEEESSCHHHHSHH-----------------
T ss_pred hh-ccccCCCccc------c-cccchHHHHHHHHHHHHHHhh---CCCEEEEeCCcCCCcchh-----------------
Confidence 00 0011110011 1 234689999999999999988 666899999998765443
Q ss_pred cCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEe
Q psy2375 548 PVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGG 627 (929)
Q Consensus 548 ~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~ 627 (929)
.|++.+|+|+||+||+|++|+++ | .|+|.+| .++||+++|++| ++|++||++..+.++. ++++++
T Consensus 348 --------~~~~~~p~R~~d~gIaE~~~v~~--a--~G~A~~G-~~~~~~~~f~~F-l~~a~dqi~~~a~~~~-~v~~v~ 412 (616)
T 3mos_A 348 --------IFKKEHPDRFIECYIAEQNMVSI--A--VGCATRN-RTVPFCSTFAAF-FTRAFDQIRMAAISES-NINLCG 412 (616)
T ss_dssp --------HHHHHCGGGEEECCSCHHHHHHH--H--HHHHGGG-CCEEEEEEEGGG-GGGGHHHHHHHHHTTC-CEEEEE
T ss_pred --------hHHHhCCCCeEEcCccHHHHHHH--H--HHHHHcC-CCCEEEEehHHH-HHHHHHHHHHHHHhCC-CeEEEE
Confidence 35577899999999999998886 4 4588888 248999999999 6899999988755554 678889
Q ss_pred ecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcc-cc
Q psy2375 628 TSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKG-QE 706 (929)
Q Consensus 628 t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~-~~ 706 (929)
+++|+++|.||+|||+.+|+++++++||++|++|+|++|+..+++.+++. + .++|+|++|.+ .|.+... ..
T Consensus 413 ~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~~---~-gp~~ir~~r~~----~p~~~~~~~~ 484 (616)
T 3mos_A 413 SHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANT---K-GICFIRTSRPE----NAIIYNNNED 484 (616)
T ss_dssp ESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHTC---C-SEEEEECCSSC----CBCCSCTTCC
T ss_pred ECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhc---C-CCEEEEEeCCC----CCccCCCccc
Confidence 99999899999999999999999999999999999999999999999976 2 34899998865 2443321 11
Q ss_pred cccccceEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccch
Q psy2375 707 KGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQK 785 (929)
Q Consensus 707 ~~i~~G~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~ 785 (929)
..+ .+.|++++++ ..||+||++|+++++|+ ||+.|+++ ||+++|||+++++|||++.+
T Consensus 485 ~~~-Gka~vl~eg~----d~dv~iva~G~~v~~al~Aa~~L~~~-Gi~v~Vidlr~l~PlD~e~i--------------- 543 (616)
T 3mos_A 485 FQV-GQAKVVLKSK----DDQVTVIGAGVTLHEALAAAELLKKE-KINIRVLDPFTIKPLDRKLI--------------- 543 (616)
T ss_dssp CCT-TCCEEEECCS----SEEEEEECCTHHHHHHHHHHHHHHTT-TCEEEEEECSEEESCCHHHH---------------
T ss_pred ccC-CeEEEEEeCC----CCCEEEEEeCHHHHHHHHHHHHHHhc-CCCEEEEEeCccCCCCHHHH---------------
Confidence 223 3378888863 24699999999999999 99999998 99999999999999998753
Q ss_pred HHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-C-CcEEEEecCcccccCChhhHHhhhcceeheeccccc
Q psy2375 786 VAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-G-RIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKV 857 (929)
Q Consensus 786 ~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~-~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al 857 (929)
.+.++++.+.||++||++. |+++.|.+++.+ + .++.++|+..|+.+|++++|+++||+|++.|+++++
T Consensus 544 ----~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~~~~v~~~g~~~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 544 ----LDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp ----HHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCTTCEEEEEEECSCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred ----HHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3334333158999999975 799999999875 2 578899998899999999999999999999998765
No 13
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.7e-83 Score=769.76 Aligned_cols=611 Identities=17% Similarity=0.156 Sum_probs=468.1
Q ss_pred cCCCCCCcccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCC
Q psy2375 49 NVPLFKNTAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPT 128 (929)
Q Consensus 49 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~ 128 (929)
.+|...+||||++|..+.+.+.++.++|+++++ +||+++++++.+ + +||+++++|+++++.+||.. |+.
T Consensus 3 ~~~~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~-~iR~~~~~~~~~-~------~Gh~~~~lg~v~l~~aL~~~-~~~-- 71 (629)
T 2o1x_A 3 ELPGTSDTPLLDQIHGPKDLKRLSREQLPALTE-ELRGEIVRVCSR-G------GLHLASSLGAVDIITALHYV-LDS-- 71 (629)
T ss_dssp --CCCCSCTTGGGCSSHHHHTTSCGGGHHHHHH-HHHHHHHHHHTT-S------SSCHHHHHHTHHHHHHHHHH-SCT--
T ss_pred CCCCCCCCchhhhCCChhhhhhCCHHHHHHHHH-HHHHHHHHHHHh-c------CCcCCCchhHHHHHHHHHhh-cCC--
Confidence 467788999999999999999999999999885 799999999975 4 89999999999999999864 653
Q ss_pred CCCCCcEEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHH
Q psy2375 129 HSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLK 208 (929)
Q Consensus 129 ~~~~dd~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~k 208 (929)
.+|++|+++||++ |++++++|| .+++.+|||. .|++|||++.++| ++.+.+|+||+|++.|+|+|.|.|
T Consensus 72 --~~D~~v~~~GH~~---y~~~~l~G~--~~~~~~~r~~---~g~~G~p~~~~s~-~~~~~~G~~G~gl~~AvG~AlA~k 140 (629)
T 2o1x_A 72 --PRDRILFDVGHQA---YAHKILTGR--RDQMADIKKE---GGISGFTKVSESE-HDAITVGHASTSLTNALGMALARD 140 (629)
T ss_dssp --TTSEEEESSSTTC---HHHHHTTTT--GGGGGGTTST---TSCCSSCCGGGCT-TCCSCCSSSSCHHHHHHHHHHHHH
T ss_pred --CCCeEEecCchHH---HHHHHHhCc--HhHHhCcccC---CCCCCCCCCCCCC-CCCcCCCcccccHhHHHHHHHHHH
Confidence 3788999999999 999999999 4789999997 6689999998887 589999999999999999998888
Q ss_pred HHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceE
Q psy2375 209 YLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNV 288 (929)
Q Consensus 209 yl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~v 288 (929)
+. +.+++|||++|||++++|++||||++|+++++ |||||||||.++|++++.+.....++ .+.+.+|+.
T Consensus 141 ~~-------~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~-pli~IvnnN~~~i~~~~~~~~~~~~~---l~~~~~y~~ 209 (629)
T 2o1x_A 141 AQ-------GKDFHVAAVIGDGSLTGGMALAALNTIGDMGR-KMLIVLNDNEMSISENVGAMNKFMRG---LQVQKWFQE 209 (629)
T ss_dssp HH-------TCCCCEEEEEETTGGGSHHHHHHHHHHHHHCC-SEEEEEEECSBSSSBCCSSHHHHC--------------
T ss_pred Hh-------CCCCeEEEEEchhhhhccHHHHHHHHHHhhCC-CEEEEEECCCCCCCCChhHHHHHHHH---HhhchhHHH
Confidence 63 35789999999999999999999999999995 69999999999999999763222222 122334443
Q ss_pred EEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccC-CCCCCcHHH
Q psy2375 289 IKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-TFGGHDLRK 367 (929)
Q Consensus 289 i~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l-~~dGhD~~~ 367 (929)
++. |+... +.+ .+..+.+.+.+.+|..++ ++. |...++.+.++ +.++ ++||||+++
T Consensus 210 ~~~-~~~~~---~~~-~g~~~~~~~~~~~d~~~~-------------~~~--p~~~~~~ea~G---~~~~g~vdG~d~~~ 266 (629)
T 2o1x_A 210 GEG-AGKKA---VEA-VSKPLADFMSRAKNSTRH-------------FFD--PASVNPFAAMG---VRYVGPVDGHNVQE 266 (629)
T ss_dssp ------------------------------------------------------CCCTTGGGT---CEEEEEEESSCHHH
T ss_pred HHH-HHHHH---Hhc-cchHHHHHHHHHHHHHHh-------------hcC--cccchHHHhcC---CeEEeeECCcCHHH
Confidence 332 11110 000 011111222222221100 000 00001222233 2234 569999999
Q ss_pred HHHHHHHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHH
Q psy2375 368 IYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEI 447 (929)
Q Consensus 368 v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~ 447 (929)
|++|+++|++. ++|++|+++|.||+|+++++++...||+..+| ..+.+.
T Consensus 267 l~~al~~A~~~-~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f--------------------------~~~~~~---- 315 (629)
T 2o1x_A 267 LVWLLERLVDL-DGPTILHIVTTKGKGLSYAEADPIYWHGPAKF--------------------------DPATGE---- 315 (629)
T ss_dssp HHHHHHHHTTS-SSEEEEEEECCTTTTCHHHHHCTTGGGSCCSB--------------------------CTTTCC----
T ss_pred HHHHHHHHHhc-CCCEEEEEEEecCCCCChhHcCCcccccCccC--------------------------CcCcCc----
Confidence 99999999876 78999999999999999867777799997432 211100
Q ss_pred HHHHHHHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCc
Q psy2375 448 QYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTF 527 (929)
Q Consensus 448 ~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~ 527 (929)
.|. .. ..+++++|+++|.++++. +++|+++++|+..++
T Consensus 316 -------------~~~-------------------------~~-~~~~~~~~~~~l~~~~~~---d~~v~~i~~d~~~~~ 353 (629)
T 2o1x_A 316 -------------YVP-------------------------SS-AYSWSAAFGEAVTEWAKT---DPRTFVVTPAMREGS 353 (629)
T ss_dssp -------------BCC-------------------------CC-CCBHHHHHHHHHHHHHHH---CTTEEEEESSCTTTT
T ss_pred -------------ccc-------------------------cc-hHHHHHHHHHHHHHHhhh---CcCEEEEeccccCCc
Confidence 000 01 357899999999999987 667899999998877
Q ss_pred CccccchhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHh
Q psy2375 528 GMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQR 607 (929)
Q Consensus 528 gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR 607 (929)
|+.+ |++.||+||||+||+|++|+++ |+ |+|.+| ++||+.+|++| ++|
T Consensus 354 ~~~~-------------------------f~~~~~~r~~~~gIaE~~~~~~--a~--G~A~~G--~rp~~~~~~~F-~~~ 401 (629)
T 2o1x_A 354 GLVE-------------------------FSRVHPHRYLDVGIAEEVAVTT--AA--GMALQG--MRPVVAIYSTF-LQR 401 (629)
T ss_dssp TCHH-------------------------HHHHCGGGEEECCSCHHHHHHH--HH--HHHHTT--CEEEEEEEHHH-HGG
T ss_pred ChHH-------------------------HHHhcCcceEeccccHHHHHHH--HH--HHHHcC--CEEEEEecHHH-HHH
Confidence 7653 4567899999999999998886 44 477888 99999999999 689
Q ss_pred HHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEE
Q psy2375 608 IGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFY 687 (929)
Q Consensus 608 ~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~ 687 (929)
++||+...++++..+++++++++|+ ++++|+|||+.+|++++|++||++|++|+|++|++.+++.|++. .+ |+|+
T Consensus 402 a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-~~---Pv~i 476 (629)
T 2o1x_A 402 AYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DG---PFAI 476 (629)
T ss_dssp GHHHHHHTTTTTTCCCEEEEESBBC-CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-SS---CEEE
T ss_pred HHHHHHHHHhhcCCCEEEEEECCcc-CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-CC---CEEE
Confidence 9999876554555568888899887 58899999999999999999999999999999999999999997 22 4999
Q ss_pred EEecCCCCCCCCCCCcccccccccc-eEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEccccccc
Q psy2375 688 YITVMNENYSHPGLKKGQEKGIIKG-LYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLL 765 (929)
Q Consensus 688 rl~~~~e~~~~p~~~~~~~~~i~~G-~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pL 765 (929)
|+++.+. |..+......+..| .|+++++ +||+||++|+++++|+ ||+.|+ +++|||++|++||
T Consensus 477 ~~~r~~~----~~~~~~~~~~~~~G~~~~~~~g------~dv~iva~G~~v~~a~~Aa~~L~-----~~~Vi~~~~~~Pl 541 (629)
T 2o1x_A 477 RYPRGNT----AQVPAGTWPDLKWGEWERLKGG------DDVVILAGGKALDYALKAAEDLP-----GVGVVNARFVKPL 541 (629)
T ss_dssp ECCSSBC----CCCCTTCCCCCCTTCCEEEECC------SSEEEEECHHHHHHHHHHHTTCT-----TEEEEECCEEESC
T ss_pred EecCCCC----CCCcccccccccCCceEEEeeC------CCEEEEEecHHHHHHHHHHHHhc-----CCEEEeeCCCCCC
Confidence 9998642 32221111234445 4888764 6999999999999999 999995 7999999999999
Q ss_pred ccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-C--CcEEEEec-CcccccCChh
Q psy2375 766 ARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-G--RIYKVLGT-DGFGCSDTRK 839 (929)
Q Consensus 766 d~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~--~~~~~lG~-d~Fg~sgs~~ 839 (929)
|++ ++.++++++ +.+|++||+.. |+++.|++++.+ + .++.++|+ |.|+.||+.+
T Consensus 542 d~~-------------------~i~~~~~~~-~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~~v~~ig~~d~f~~~g~~~ 601 (629)
T 2o1x_A 542 DEE-------------------MLREVGGRA-RALITVEDNTVVGGFGGAVLEALNSMNLHPTVRVLGIPDEFQEHATAE 601 (629)
T ss_dssp CHH-------------------HHHHHHHHC-SEEEEEEEEESSSSHHHHHHHHHHHTTCCCEEEEEEECSSCCCSCCHH
T ss_pred cHH-------------------HHHHHHhhC-CcEEEEecCCCCCCHHHHHHHHHHHhCCCCCeEEEeeCCcCCCCCCHH
Confidence 875 456677776 78999999965 699999888754 2 57889999 9999999999
Q ss_pred hHHhhhcceeheeccccccCc
Q psy2375 840 KLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 840 ~L~~~fgldae~Iv~~al~~L 860 (929)
+|+++||+|++.|+++++..+
T Consensus 602 ~l~~~~gl~~~~I~~~i~~~~ 622 (629)
T 2o1x_A 602 SVHARAGIDAPAIRTVLAELG 622 (629)
T ss_dssp HHHHHHTCSHHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999887765
No 14
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-81 Score=751.58 Aligned_cols=603 Identities=16% Similarity=0.175 Sum_probs=441.1
Q ss_pred CCcccccCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCC
Q psy2375 54 KNTAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGG 133 (929)
Q Consensus 54 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~d 133 (929)
+++++|++|..+.+.+..+.++|+++++ +||+++++|+.+ + +||+++++|+++++.+||.. |+.| +|
T Consensus 6 ~~~~~l~~i~~p~d~~~l~~~~l~~l~~-~iR~~~~~~~~~-~------~Gh~~~~lg~~~~~~~l~~~-~~~~----~D 72 (621)
T 2o1s_A 6 AKYPTLALVDSTQELRLLPKESLPKLCD-ELRRYLLDSVSR-S------SGHFASGLGTVELTVALHYV-YNTP----FD 72 (621)
T ss_dssp TTSTTGGGCSSHHHHTTSCGGGHHHHHH-HHHHHHHHHSCG-G------GCTHHHHHTTHHHHHHHHHH-SCTT----TS
T ss_pred CCCchhhhcCChHHhhhCCHHHHHHHHH-HHHHHHHHHHhh-c------CCCcCCChhHHHHHHHHHhc-cCCC----CC
Confidence 4578999999999988889999999884 799999999965 3 79999999999999999864 6533 78
Q ss_pred cEEEeCCCchHHHHHHHHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhc
Q psy2375 134 DLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHAR 213 (929)
Q Consensus 134 d~i~~~GH~ap~~Ya~~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r 213 (929)
++||++||++ |++++++|+ .++|.+|||. +|+++||+|.++| ++.|.+|+||+|++.|+|+|.|.|+.
T Consensus 73 ~~v~~~gH~~---y~~~~l~G~--~~~~~~~r~~---~g~~g~~~~~~s~-~~~~~~G~~G~gl~~A~G~AlA~~~~--- 140 (621)
T 2o1s_A 73 QLIWDVGHQA---YPHKILTGR--RDKIGTIRQK---GGLHPFPWRGESE-YDVLSVGHSSTSISAGIGIAVAAEKE--- 140 (621)
T ss_dssp EEEESSSTTC---HHHHHTTTT--GGGGGGTTST---TSCCSSCCTTTCT-TCCSCCSSSSCHHHHHHHHHHHHHHH---
T ss_pred EEEEeCchHH---HHHHHHhCC--Hhhhhccccc---CCCCCCCCCCCCC-CCccCCcccchHHHHHHHHHHHHHHh---
Confidence 8999999999 999999999 5789999998 6789999998877 57999999999999999999888863
Q ss_pred cccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEec
Q psy2375 214 KITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIW 293 (929)
Q Consensus 214 ~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~ 293 (929)
+.+++|||++|||++++|++||||++|++++ .|||||||||.++|++++........++ ....+|+.++. |
T Consensus 141 ----~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~-~pli~vvnnN~~~i~~~~~~~~~~~~~~---~~~~~y~~~~~-~ 211 (621)
T 2o1s_A 141 ----GKNRRTVCVIGDGAITAGMAFEAMNHAGDIR-PDMLVILNDNEMSISENVGALNNHLAQL---LSGKLYSSLRE-G 211 (621)
T ss_dssp ----TSCCCEEEEEETTGGGSHHHHHHHHHHHHHC-CSEEEEEEECC---------------------------------
T ss_pred ----CCCCeEEEEEchhhhhccHHHHHHHHHHhhC-CCEEEEEeCCCcccCCCcchHHHHHHhh---hcchhHHHHHH-H
Confidence 3578999999999999999999999999999 4699999999999999987532211111 11122222221 1
Q ss_pred ccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccC-CCCCCcHHHHHHHH
Q psy2375 294 SSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-TFGGHDLRKIYSAF 372 (929)
Q Consensus 294 g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l-~~dGhD~~~v~~a~ 372 (929)
+.+. +... ..+.+...+..| |++.. + .| ..+.+.++ +.++ ++||||+++|++|+
T Consensus 212 ~~~~---~~~~--p~~~~~~~r~~~------------~~~~~-~--~p--~~~~ea~G---~~~~g~vdG~d~~~l~~al 266 (621)
T 2o1s_A 212 GKKV---FSGV--PPIKELLKRTEE------------HIKGM-V--VP--GTLFEELG---FNYIGPVDGHDVLGLITTL 266 (621)
T ss_dssp -----------------------------------------------C--HHHHHHTT---CEEEEEEETTCHHHHHHHH
T ss_pred HHHH---Hhcc--chHHHHHHHHHH------------Hhhhc-c--Ch--hhHHHHCC---CeEeeeeCCCCHHHHHHHH
Confidence 1000 0000 000000001111 00000 0 01 12223333 1222 34999999999999
Q ss_pred HHHHhCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhhcCCCCCCcccccCCCCCCCCCcHHHHHHHH
Q psy2375 373 KMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKN 452 (929)
Q Consensus 373 ~~a~~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~p~~d~~~~~~~f~~~~~~~~~~~~~~~ 452 (929)
++|++. ++|++|+++|.||+|++++++++..||+..+|+ .+.+.
T Consensus 267 ~~A~~~-~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~--------------------------~~~~~--------- 310 (621)
T 2o1s_A 267 KNMRDL-KGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFD--------------------------PSSGC--------- 310 (621)
T ss_dssp HHHHHS-CSEEEEEEECCCTTCCCCC------------------------------------------------------
T ss_pred HHHHHc-CCCEEEEEEEecccCCChhhcCchhccCCCCCC--------------------------CCcCc---------
Confidence 999986 789999999999999998777777999974332 11100
Q ss_pred HHHHhCCCCCcccccccccccCCChHHHhhhhccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCcccc
Q psy2375 453 CRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGL 532 (929)
Q Consensus 453 ~~~~l~g~~p~~~~~~~~~l~~P~~~~f~~~~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~ 532 (929)
|. . . .....+++++|+++|.++++. +++||++++|+..++|+.+
T Consensus 311 ---------~~-----~-----------------~-~~~~~~~~~~~~~~l~~~~~~---d~~v~~~~~d~~~~~~~~~- 354 (621)
T 2o1s_A 311 ---------LP-----K-----------------S-SGGLPSYSKIFGDWLCETAAK---DNKLMAITPAMREGSGMVE- 354 (621)
T ss_dssp ---------------------------------------CCBHHHHHHHHHHHHHHH---CTTEEEEESSCTTTTTCHH-
T ss_pred ---------cc-----c-----------------c-ccchHHHHHHHHHHHHHHHhh---CcCEEEEeCcccCCcChHH-
Confidence 00 0 0 012458999999999999987 6668999999988777652
Q ss_pred chhcccccccCcccccCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHH
Q psy2375 533 FRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLA 612 (929)
Q Consensus 533 f~~~gi~~~~gq~~~~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i 612 (929)
|++.||+||||+||+|++|+++ |+ |+|.+| ++||+.+|++| ++|++||+
T Consensus 355 ------------------------~~~~~~~r~~~~gIaE~~~~~~--a~--G~A~~G--~rp~~~~~~~F-~~~a~dqi 403 (621)
T 2o1s_A 355 ------------------------FSRKFPDRYFDVAIAEQHAVTF--AA--GLAIGG--YKPIVAIYSTF-LQRAYDQV 403 (621)
T ss_dssp ------------------------HHHHCTTTEEECCSCHHHHHHH--HH--HHHHTT--CEEEEEEETTG-GGGGHHHH
T ss_pred ------------------------HHHhCCCceEecCcCHHHHHHH--HH--HHHHCC--CEEEEEehHhH-HHHHHHHH
Confidence 4567899999999999998886 44 477888 99999999999 68999998
Q ss_pred HHhhhhcCCcEEEEeecCCeeecCCCCCCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 613 WLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 613 ~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
...++++..+++++++++|+ ++++|+|||+.+|++++|++||++|++|+|++|++.+++.|++...+ |+|+|+++.
T Consensus 404 ~~~~a~~~~pvv~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~---Pv~i~~~r~ 479 (621)
T 2o1s_A 404 LHDVAIQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDG---PSAVRYPRG 479 (621)
T ss_dssp HHTTTTTTCCCEEEEESCBC-CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCSS---CEEEECCSS
T ss_pred HHHHHhcCCCEEEEEECCcc-CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCCC---CEEEEeCCC
Confidence 76544555568888899887 58899999999999999999999999999999999999999987433 499999876
Q ss_pred CCCCCCCCC--Ccccccccccce-EEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccc
Q psy2375 693 NENYSHPGL--KKGQEKGIIKGL-YLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARD 768 (929)
Q Consensus 693 ~e~~~~p~~--~~~~~~~i~~G~-y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~ 768 (929)
+- |.. ++. ..+..|. |+++++ +||+||++|+++++|+ | ++ ||+++|||++|++|||++
T Consensus 480 ~~----~~~~~~~~--~~~~~G~~~~~~~g------~dv~iva~G~~~~~a~~A-----~~-Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 480 NA----VGVELTPL--EKLPIGKGIVKRRG------EKLAILNFGTLMPEAAKV-----AE-SLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp BC----CCCCCCCC--CCCCTTCCEEEECC------SSEEEEEESTTHHHHHHH-----HH-HHTCEEEECCEEESCCHH
T ss_pred CC----CCCCCCcc--ccccCCceEEeecC------CCEEEEEecHHHHHHHHH-----cC-CCCEEEEecCccCCCCHH
Confidence 42 222 222 2344454 778764 6999999999999999 8 45 999999999999999875
Q ss_pred hhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-C--CcEEEEec-CcccccCChhhHH
Q psy2375 769 GQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-G--RIYKVLGT-DGFGCSDTRKKLR 842 (929)
Q Consensus 769 ~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~--~~~~~lG~-d~Fg~sgs~~~L~ 842 (929)
++.++++++ +.+|++||+.. |+++.|++++.+ + .++.++|+ |.|+.||++++|+
T Consensus 542 -------------------~i~~~~~~~-~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~ 601 (621)
T 2o1s_A 542 -------------------LILEMAASH-EALVTVEENAIMGGAGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMR 601 (621)
T ss_dssp -------------------HHHHHHHHC-SEEEEEEEEESTTSHHHHHHHHHHHTTCCCCEEEEEECSSCCCCSCHHHHH
T ss_pred -------------------HHHHHHccC-CeEEEEECCCCCCCHHHHHHHHHHhcCCCCCeEEEecCCcCCCCCCHHHHH
Confidence 446677776 78999999965 699999888754 2 57889999 9999999999999
Q ss_pred hhhcceeheeccccccCc
Q psy2375 843 DFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 843 ~~fgldae~Iv~~al~~L 860 (929)
++||+|++.|+++++..+
T Consensus 602 ~~~g~~~~~I~~~i~~~l 619 (621)
T 2o1s_A 602 AELGLDAAGMEAKIKAWL 619 (621)
T ss_dssp HHTTCSHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHh
Confidence 999999999998876544
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=1.4e-79 Score=740.24 Aligned_cols=625 Identities=17% Similarity=0.177 Sum_probs=465.7
Q ss_pred CCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCc-EEEeCCCchHHHHHHHHHcCCCC---------HHHHhh-hccccCC
Q psy2375 102 LGGHLSSFASLAHILEIGFNHFWRAPTHSHGGD-LIYIQGHSAPGVYARAFLEGRLT---------EEQMIN-FRQEVDG 170 (929)
Q Consensus 102 ~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd-~i~~~GH~ap~~Ya~~~l~Gr~~---------~~~l~~-fR~~~~~ 170 (929)
..||+|+++|++++|..+ +.+.+. .++|+ ||+++||++|++||.++|+|.++ +++|++ |||++..
T Consensus 81 ~sGH~G~~~g~a~iy~~~-~~~~~~---~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~ 156 (845)
T 3ahc_A 81 LVGHWGTTPGLNFLLAHI-NRLIAD---HQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYP 156 (845)
T ss_dssp CCSCCTTHHHHHHHHHHH-HHHHHH---HTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCT
T ss_pred CCCCCCCCHHHHHHHHHH-HHhccc---CCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCC
Confidence 379999999999997655 444432 25889 79999999999999999999964 588999 8999777
Q ss_pred CCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcc---cHHHHHHHHHc
Q psy2375 171 YGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPE---SISEISMAARE 247 (929)
Q Consensus 171 ~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~---~~eAl~~A~~~ 247 (929)
+|++|||.| ..|+ ++++||++|+|+++|+|+| + +..+.+|||++||||++||. +||+.++|+..
T Consensus 157 gg~pgHp~~-~tpG-ve~~tG~LGqGls~AvG~A-----~------~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~ 223 (845)
T 3ahc_A 157 GGIPSHFAP-ETPG-SIHEGGELGYALSHAYGAV-----M------NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPR 223 (845)
T ss_dssp TSBCSSCCT-TSTT-CSCCCSSTTCHHHHHHHHH-----T------TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTT
T ss_pred CCCCCCCCC-CCCC-eecCCCCccchHhHHhhhh-----h------cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhh
Confidence 789999987 4786 7999999999999999999 4 34578999999999999999 99999999999
Q ss_pred CCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEE-EEecccchhhhhhcCchhHHHHHHHHhcccchhcccc
Q psy2375 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVI-KVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRS 326 (929)
Q Consensus 248 ~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi-~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~ 326 (929)
+|+||+.|+|+|+++||||+.......+++.++|++|||+|+ .|
T Consensus 224 ~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~v----------------------------------- 268 (845)
T 3ahc_A 224 TDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFV----------------------------------- 268 (845)
T ss_dssp TSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEE-----------------------------------
T ss_pred cCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEe-----------------------------------
Confidence 999999999999999999996321237899999999999999 66
Q ss_pred CCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-C--cHHHHHHHHHH---------------HHh-CCCCC--eEE
Q psy2375 327 KNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-H--DLRKIYSAFKM---------------AQK-NKDKP--TVL 385 (929)
Q Consensus 327 ~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-h--D~~~v~~a~~~---------------a~~-~~~~P--~vI 385 (929)
|| | |+++|.+|+.+ |+. .+++| ++|
T Consensus 269 ----------------------------------dG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 269 ----------------------------------AGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp ----------------------------------CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred ----------------------------------CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 89 9 99999988653 333 24799 999
Q ss_pred EEeeeccc-------CCccCCCCCcccccccCCCH--HHHHHHHhhcCC--CCCCcccccCCCCCCCCCcHHHHHHHHH-
Q psy2375 386 LIKSIKGY-------GLGRFGEARNTAHNIKKIDH--QGIKSIRDFLKL--PIPDSELSLVPFYKPSKNSPEIQYLKNC- 453 (929)
Q Consensus 386 ~~~T~KG~-------G~~~~~e~~~~~H~~~~l~~--~~~~~~r~~~~~--p~~d~~~~~~~f~~~~~~~~~~~~~~~~- 453 (929)
+++|+||| |.+ .|+...+|+. |++. ++.+.++...+| +-..+ ..|..|.+..++++.+..+
T Consensus 315 i~rT~kG~tgp~~~~G~~--~eg~~~~H~~-pl~~~~~~~~~~~~l~~wl~~~~p~----elF~~~~~~~~~~~~~~~~g 387 (845)
T 3ahc_A 315 IFRTPKGWTCPKFIDGKK--TEGSWRAHQV-PLASARDTEEHFEVLKGWMESYKPE----ELFNADGSIKDDVTAFMPKG 387 (845)
T ss_dssp EEECCTTTTSCSEETTEE--CTTSGGGSSC-SCTTTTTCHHHHHHHHHHHHHTCGG----GTBCTTSCBCHHHHTTSCCG
T ss_pred EEECcccCCCCCCCCCcc--cCCCccccCC-CCCCcccCHHHHHHHhhhccCCCch----hccCCchHHHHHHHHhCcch
Confidence 99999999 984 6999999998 7876 345555555444 11111 2377777776654432111
Q ss_pred HHHhCCCCCcccc-cccccccCCChHHHhhh-hcc-ccccCcccHHHHHHHHHHHHHhccCCCCc-eeeeecCCCCCcCc
Q psy2375 454 RKKLGGYLPKRRQ-KSDEKLLIPPLEAFKKI-LEP-TLNERKISTTYAYVRILNTILRDKNIGNR-VVPILVDESRTFGM 529 (929)
Q Consensus 454 ~~~l~g~~p~~~~-~~~~~l~~P~~~~f~~~-~~~-~~~~~~~str~af~~~L~~L~~~~~i~~r-Iv~i~aD~~~s~gl 529 (929)
.++++ ..|.... .....+.+|+...|... .+. ..+..+..+|.+++.+|.+|++. +++ +++++||++.|+++
T Consensus 388 ~~r~~-~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~---~p~~~vv~sADl~~Sn~t 463 (845)
T 3ahc_A 388 ELRIG-ANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKN---NPDSFRIFGPDETASNRL 463 (845)
T ss_dssp GGSTT-TCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHH---STTTEEEEESSCTTTTTC
T ss_pred HhHhh-hCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHh---CCCcEEEEecCCCccccH
Confidence 11121 2343221 11113456665433110 110 00112345677788999999998 333 69999999999998
Q ss_pred cccchhcccccccCcccc--cCChhhhhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHH--
Q psy2375 530 EGLFRQIGIFSQVGQLYD--PVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGL-- 605 (929)
Q Consensus 530 ~~~f~~~gi~~~~gq~~~--~~d~~~~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~-- 605 (929)
..|++.++-- .-..|. |.| + ..++.||+|+ ||+||+|+++ + .|||++| .+||+.+|++|..
T Consensus 464 ~~f~~~t~~~--~~~~~~~~P~d-~-----~~~~~GR~i~-GI~Eh~M~gi--a--~Glal~G--~~~f~~t~atFl~~~ 528 (845)
T 3ahc_A 464 NATYEVTDKQ--WDNGYLSGLVD-E-----HMAVTGQVTE-QLSEHQCEGF--L--EAYLLTG--RHGIWSSYESFVHVI 528 (845)
T ss_dssp GGGGGTCCEE--CCSCCCCTTTC-C-----SEESSCSEEE-CSCHHHHHHH--H--HHHHHTT--CEEEEEEEHHHHGGG
T ss_pred HHHHhhcccc--cccccccCCcc-c-----ccCCCCcEee-eecHHHHHHH--H--HHHHhcC--CCCceecchhhhchh
Confidence 8666531100 011233 544 1 2456799999 9999998875 3 4599998 8899999999975
Q ss_pred HhHHHH----HHHh-hh----hcCCcEEEEeecCCeeecCCCCCCCCh--hhHHHHh---cCCCcEEEccCCHHHHHHHH
Q psy2375 606 QRIGDL----AWLA-GD----IRARGFLIGGTSGRTTINGEGLQHEDG--HSHVLAS---TIPNCIPYDPTFAHEVAIII 671 (929)
Q Consensus 606 qR~~d~----i~~~-~~----~~~~~v~i~~t~~~~~~g~dG~tHq~~--ed~~l~r---~iPnl~v~~Pada~E~~~~l 671 (929)
.|+.+| ++++ .. +..+++++++||+++++|+||+|||++ +++..++ ++|||+||+|||++|++.++
T Consensus 529 ~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~ 608 (845)
T 3ahc_A 529 DSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAIS 608 (845)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHH
Confidence 799999 7777 43 245579999999999999999999995 4555555 78999999999999999999
Q ss_pred HHHHhhccCCCceEEEEE-ecCCCCCCCCCCCccc--ccccccceEEEeccCCc--CCCCcEEEEEeChhH-HHHH-HHH
Q psy2375 672 HHGLHCMISNQEDVFYYI-TVMNENYSHPGLKKGQ--EKGIIKGLYLLKNHNNE--KSKLKVQLIGSGAIL-REIL-ASK 744 (929)
Q Consensus 672 ~~al~~~~g~~~~v~~rl-~~~~e~~~~p~~~~~~--~~~i~~G~y~l~~g~~~--~~g~dv~Lia~G~~v-~~al-AAe 744 (929)
+.++++. ++ +|+++ +|.+ .|.++... ...+.+|+|++.+.+.+ +..+||+|+++|+++ .+|+ ||+
T Consensus 609 ~~al~~~---~~-~~v~v~sRq~----~p~~~~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLiAtGsev~~EAL~AA~ 680 (845)
T 3ahc_A 609 EKCFKST---NK-INAIFAGKQP----APTWVTLDEARAELEAGAAEWKWASNAENNDEVQVVLASAGDVPTQELMAASD 680 (845)
T ss_dssp HHHHHCB---SC-EEEEECCCSC----EEECSCHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEEEESHHHHHHHHHHHH
T ss_pred HHHHHcC---CC-eEEEEecCCC----CCccCCchhhhhhhcCCeEEEEeecccccCCCCCEEEEEeccHHHHHHHHHHH
Confidence 9999983 33 55665 7754 46664322 13577999999832100 013799999999775 6699 999
Q ss_pred HHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhccCC---
Q psy2375 745 ILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKG--- 821 (929)
Q Consensus 745 ~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l~~~--- 821 (929)
+|+++ ||+++||||+++.+|+... -||.... ......++... .++|.+ ..|+++.|++.+.+.
T Consensus 681 ~L~~~-GI~vRVVsm~~lf~lqp~~--------~~~~~ls-~~~~~~l~T~e-~h~i~~---~gGlgsaV~ell~~r~~~ 746 (845)
T 3ahc_A 681 ALNKM-GIKFKVVNVVDLLKLQSRE--------NNDEALT-DEEFTELFTAD-KPVLFA---YHSYAQDVRGLIYDRPNH 746 (845)
T ss_dssp HHHHT-TCCEEEEEECBGGGGSCTT--------TCTTSCC-HHHHHHHHCSS-SCEEEE---ESSCHHHHHHHTTTSTTG
T ss_pred HHHhC-CCCEEEEEeCCCCccCCcc--------ccccccC-HHHhCcEeecC-Ccceee---ecCcHHHHHHHHHhCCCC
Confidence 99998 9999999999997665432 1333332 23335566543 456552 347999999998863
Q ss_pred CcEEEEecCcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 822 RIYKVLGTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 822 ~~~~~lG~d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
.++.++|+.+||.++++.+|+.+||||+++|+..++..+
T Consensus 747 ~~l~v~G~~d~G~tgtp~eLl~~~gld~~~Iv~~a~~~l 785 (845)
T 3ahc_A 747 DNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLI 785 (845)
T ss_dssp GGEEEECCCSCCCSCCHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCCCCHHHHHHHhCcCHHHHHHHHHHHc
Confidence 479999996699999999999999999999998877655
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.1e-43 Score=437.44 Aligned_cols=624 Identities=12% Similarity=0.079 Sum_probs=364.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccCC---CCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHH
Q psy2375 71 PGNIKIEEHLQSLIRWNAMALVIRANKID---SSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVY 147 (929)
Q Consensus 71 ~~~~~l~~~~~~~iR~~~~~~v~~a~~~~---~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Y 147 (929)
++.+++.+.++.+++...++......... -++-|+-+...++..++...-. -..+|+|+...|-. .
T Consensus 195 ~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~--------~g~~D~v~g~~hRg---~ 263 (933)
T 2jgd_A 195 FNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGN--------SGTREVVLGMAHRG---R 263 (933)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHT--------TTCCEEEEECCSTT---H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhh--------CCCCCEEecCCCcC---H
Confidence 46677777777777776666533222111 2334666666666655532111 12478888766766 2
Q ss_pred HHHHH--cCCCCHHHH-hhhccccCC----CCCCCCCCCCC-----CCCc-----cccCcccCchhHHHHHHHHHHHHHH
Q psy2375 148 ARAFL--EGRLTEEQM-INFRQEVDG----YGLSSYPHPKL-----MPKF-----WQFPTVSMGLGPLTAIHQARFLKYL 210 (929)
Q Consensus 148 a~~~l--~Gr~~~~~l-~~fR~~~~~----~gl~~~p~p~~-----~p~~-----~~f~tgs~G~g~~~Aig~A~a~kyl 210 (929)
.+.+. .| .+.+++ ..|.....+ +..+. |... .++. ..|.++|+|++++.|+|+|+|.++.
T Consensus 264 ~~~Lan~~G-~~~~~i~~e~~G~~~g~~g~gdv~~--Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~ 340 (933)
T 2jgd_A 264 LNVLVNVLG-KKPQDLFDEFAGKHKEHLGTGDVKY--HMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDR 340 (933)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHTCC--CCSCCCCGG--GCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC-CCHHHHHHHhcCCCCCCCCCCCccc--cCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhh
Confidence 23333 55 344443 334322111 11111 2100 0111 1367889999999999999998863
Q ss_pred hhccccCCCCcEEEEEEcCCcc-CCcccHHHHHHHHHcCCC--eEEEEEecCCCcccc-cccccccchHHHHHHHhhCCc
Q psy2375 211 HARKITNTINRKIWILCGDGEM-DEPESISEISMAAREKLD--NLIMIVNCNLQRLDG-PVRGNSKIIQELEAHFYGVGW 286 (929)
Q Consensus 211 ~~r~~~~~~~~~v~~~~GDGe~-~eg~~~eAl~~A~~~~L~--nli~vvn~N~~~idg-~v~~~~~~~~~l~~~f~~~Gw 286 (929)
... .++.+.+|+|++|||++ .+|.+|||||+|+.++|+ ++||||+||++++++ |+... .....+.++++++||
T Consensus 341 ~~~--~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~-~~~~~~~~~a~a~g~ 417 (933)
T 2jgd_A 341 LDE--PSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDA-RSTPYCTDIGKMVQA 417 (933)
T ss_dssp SSS--CCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC----------------CGGGGGGTTTC
T ss_pred ccc--cCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhc-ccchhHHHHHHHcCC
Confidence 211 12467899999999998 999999999999999997 478888899999999 88742 234557778999999
Q ss_pred eEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHH
Q psy2375 287 NVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLR 366 (929)
Q Consensus 287 ~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~ 366 (929)
.++.| ||||++
T Consensus 418 p~~~V---------------------------------------------------------------------dG~D~~ 428 (933)
T 2jgd_A 418 PIFHV---------------------------------------------------------------------NADDPE 428 (933)
T ss_dssp CEEEE---------------------------------------------------------------------ETTCHH
T ss_pred CEEEE---------------------------------------------------------------------CCCCHH
Confidence 99998 899999
Q ss_pred HHHHHHHHHHhC---CCCCeEEEEeeecccCCccCCCCC-------cccccc--------------cCCCHHHHHHHHhh
Q psy2375 367 KIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEAR-------NTAHNI--------------KKIDHQGIKSIRDF 422 (929)
Q Consensus 367 ~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~-------~~~H~~--------------~~l~~~~~~~~r~~ 422 (929)
+|++|++.|++. .++|++|.++|+|++|+....+.. ..++.. .-+++++++++++.
T Consensus 429 av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~ 508 (933)
T 2jgd_A 429 AVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL 508 (933)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999852 378999999999999997632210 011110 01123332222211
Q ss_pred c------CCCCCCc---------cccc-CCCC--CCCCCcHHHHHHHHHHHHhCCCCCcccccccccccCCChH-HHhhh
Q psy2375 423 L------KLPIPDS---------ELSL-VPFY--KPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLE-AFKKI 483 (929)
Q Consensus 423 ~------~~p~~d~---------~~~~-~~f~--~~~~~~~~~~~~~~~~~~l~g~~p~~~~~~~~~l~~P~~~-~f~~~ 483 (929)
. +.....+ .++. .++. .+.+.......+++..+.+. ..|+.. . ..|.+. .+..-
T Consensus 509 ~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~-~~p~~~---~---~~~~v~~~~~~R 581 (933)
T 2jgd_A 509 YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRIS-TVPEAV---E---MQSRVAKIYGDR 581 (933)
T ss_dssp HHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTT-CCCTTS---C---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhc-CCCCCC---c---ccHHHHHHHHHH
Confidence 0 0100000 0100 0110 00000001112222222222 233221 0 001111 11111
Q ss_pred hccccccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCC-cCccccchhccccc-ccCcccccCChhhhhHHHhhc
Q psy2375 484 LEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRT-FGMEGLFRQIGIFS-QVGQLYDPVDKDQVIYYREEK 561 (929)
Q Consensus 484 ~~~~~~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s-~gl~~~f~~~gi~~-~~gq~~~~~d~~~~~~~~e~~ 561 (929)
.+-..+++.+++.++++.+|.+|+++ +++|+.+++|+.++ |.= |-.-+++ ..|..|+|-+ .+++.|
T Consensus 582 ~~~~~~~~~~dw~~~e~~al~~l~~~---~~~V~~~g~Dv~~gTfs~----rh~v~~d~~~g~~~~~l~-----~l~~~~ 649 (933)
T 2jgd_A 582 QAMAAGEKLFDWGGAENLAYATLVDE---GIPVRLSGEDSGRGTFFH----RHAVIHNQSNGSTYTPLQ-----HIHNGQ 649 (933)
T ss_dssp HHHHTTSSCBCHHHHHHHHHHHHHTT---TCCEEEEETTTTTCTTSC----CCCSEECSSSSCEECGGG-----CSCTTC
T ss_pred HHhhhccCCCCHHHHHHHHHHHHHhc---CCCEEEECCccCCcchhh----hhhhcccccCCceeechH-----HHHHHc
Confidence 11000234588999999999999998 67789999999874 220 0000111 1344455543 355667
Q ss_pred -CCceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHH--HhHHHHHHHhh-h---hcCCcEEEEeecCCee
Q psy2375 562 -NGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGL--QRIGDLAWLAG-D---IRARGFLIGGTSGRTT 633 (929)
Q Consensus 562 -~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~--qR~~d~i~~~~-~---~~~~~v~i~~t~~~~~ 633 (929)
|.||+|+||+|++++++ |+ |||+.|...+|++ +.|+.|.. ||++||+...+ + ++. ++++...+|
T Consensus 650 gp~rv~ds~IaE~~~vg~--a~--G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~-~vv~~l~~G--- 721 (933)
T 2jgd_A 650 GAFRVWDSVLSEEAVLAF--EY--GYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMC-GLVMLLPHG--- 721 (933)
T ss_dssp CCEEEECCCSCHHHHHHH--HH--HHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCC-CCEEEEECC---
T ss_pred CCCeEEECCcCHHHHHHH--HH--HHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCC-CEEEEEeCC---
Confidence 99999999999998886 44 5888883334887 58999964 59999987655 3 344 577767775
Q ss_pred ecCCCCCCCC--hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHH-hhccCCCceEEEEEecCCCCCCCCC-CCccccccc
Q psy2375 634 INGEGLQHED--GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGL-HCMISNQEDVFYYITVMNENYSHPG-LKKGQEKGI 709 (929)
Q Consensus 634 ~g~dG~tHq~--~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al-~~~~g~~~~v~~rl~~~~e~~~~p~-~~~~~~~~i 709 (929)
+.+.|++||+ .+++..++++|||+|+.|+|+.|+.++|+.++ +... .|++++.++.- +.++. .+. ...+
T Consensus 722 ~~g~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~---~Pvii~~pk~l--~r~~~~~~~--~~~~ 794 (933)
T 2jgd_A 722 YEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMR---RPLVVMSPKSL--LRHPLAVSS--LEEL 794 (933)
T ss_dssp CSSSCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCC---CCEEEEECSGG--GGCTTCCBC--HHHH
T ss_pred CCCCCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCC---CcEEEEecchh--ccCCCCcCC--cccc
Confidence 2456999998 77777778889999999999999999999985 4322 24777766531 11111 110 0001
Q ss_pred ccceEEEeccCCc-CCCCcE--EEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccch
Q psy2375 710 IKGLYLLKNHNNE-KSKLKV--QLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQK 785 (929)
Q Consensus 710 ~~G~y~l~~g~~~-~~g~dv--~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~ 785 (929)
..+.|.+.-++.. ..+.|| +|+++|.+...++ |++.|+++ +++||++.+++|||.+.+
T Consensus 795 ~~~~f~~~ig~~~~~~g~dV~~vI~~~G~v~~~l~aa~~~l~~~---~v~VIdl~~l~Pld~e~i--------------- 856 (933)
T 2jgd_A 795 ANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQH---DVAIVRIEQLYPFPHKAM--------------- 856 (933)
T ss_dssp HHCCCCSEECCCSCCCGGGCCEEEEECTTHHHHHHHHHHHTTCC---SEEEEEECEEESCCHHHH---------------
T ss_pred CCCceeecCCcceEeecCcceEEEEEchHHHHHHHHHHHHcccC---CeEEEEeeccCCCCHHHH---------------
Confidence 1111211111110 013588 6666666655555 66888764 899999999999998753
Q ss_pred HHHHHHHhccCCC---cEEEEecccc--hhHHHHHhhccCC----CcEEEEec-Ccccc-cCC
Q psy2375 786 VAYITKSLEKSIG---PIIVATDYMR--LFAEQVRAFIPKG----RIYKVLGT-DGFGC-SDT 837 (929)
Q Consensus 786 ~~~~~~~l~~~~~---~vVtved~~~--~~~~~i~~~l~~~----~~~~~lG~-d~Fg~-sgs 837 (929)
.+.++.+ + .||+++|+.. |+++.|++++.+. .++.++|. |.|.. +|.
T Consensus 857 ----~~~~~k~-~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~vg~~d~~~pa~g~ 914 (933)
T 2jgd_A 857 ----QEVLQQF-AHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGH 914 (933)
T ss_dssp ----HHHHGGG-TTCCEEEEEEEEETTSTTHHHHHHHHHTTSCTTCEEEEEEECCCSSSSCSC
T ss_pred ----HHHHHhC-CCCceEEEEecCCCcCCHHHHHHHHHHHhcccCCceEEEecCCcCCCCcCC
Confidence 4455555 3 7999999975 7888888887641 36888999 77765 443
No 17
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.6e-43 Score=433.76 Aligned_cols=655 Identities=13% Similarity=0.069 Sum_probs=380.9
Q ss_pred chHHHHHHHHHHHHHHCCCcCCCCC--Cc---ccc-cCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHHhccC---CC
Q psy2375 30 NRAYYLIKKMIKFLLRHGMNVPLFK--NT---AYI-NTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKI---DS 100 (929)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~-~~i~~~~~~~~~~~~~l~~~~~~~iR~~~~~~v~~a~~~---~~ 100 (929)
-..+.||..|- +..-.-+.+.+.- +. +++ +.|.... ..++.+++.+.++.+++...++........ ..
T Consensus 71 ~~l~~~~~~l~-~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~ 147 (868)
T 2yic_A 71 KKLRDILSVLR-DAYCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRF 147 (868)
T ss_dssp CBHHHHHHHHH-HHHSSSEEEECTTCSCHHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGG
T ss_pred CCHHHHHHHHH-HhhcCCCCcceeccCChHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34567776664 4444444444322 11 122 2222222 345778887888777777777764222211 12
Q ss_pred CCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHHHH--cCCCCHHHHh-hhccccC-----CC-
Q psy2375 101 SLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFL--EGRLTEEQMI-NFRQEVD-----GY- 171 (929)
Q Consensus 101 ~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~~l--~Gr~~~~~l~-~fR~~~~-----~~- 171 (929)
++-|+-+...++..+....-. + ..+|+|+.-.|-.-+ +.+. .| .+.+++. .|..... |+
T Consensus 148 g~~G~Ea~~~g~~~~l~~~~~--l------~~~D~v~gm~hRg~~---~~Lan~~G-~~~~~i~ae~~G~~~g~~~~g~g 215 (868)
T 2yic_A 148 SLEGAETVIPMMDAVIDQCAE--H------GLDEVVIAMPHRGRL---NVLANIVG-KPYSQIFSEFEGNLNPSQAHGSG 215 (868)
T ss_dssp CCTTCTTHHHHHHHHHHHHHH--T------TCSEEEEECCSTTHH---HHHHHTTC-CCHHHHTTTCC------------
T ss_pred cCCChHHHHHHHHHHHHHhhh--C------CCCCEEEeccccchH---HHHHHHhC-CCHHHHHHHhcCCCCCCccCCCC
Confidence 334555555555544332111 1 247888877676622 2333 55 3444432 2322110 11
Q ss_pred CCCCCCCCCC-----CC-C------ccccCcccCchhHHHHHHHHHHHHHHhhccccCC-----CCcEEEEEEcCCcc-C
Q psy2375 172 GLSSYPHPKL-----MP-K------FWQFPTVSMGLGPLTAIHQARFLKYLHARKITNT-----INRKIWILCGDGEM-D 233 (929)
Q Consensus 172 gl~~~p~p~~-----~p-~------~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~-----~~~~v~~~~GDGe~-~ 233 (929)
..+. |-.. .+ + .....+++||.+++.|+|+|+|.++.... .+. .+..|||++|||++ .
T Consensus 216 dv~~--Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~--~~~~~~~~~~~~vv~~~GDGa~~~ 291 (868)
T 2yic_A 216 DVKY--HLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDT--GEEGSDNRFSVVPLMLHGDAAFAG 291 (868)
T ss_dssp CGGG--TCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTC--STTSSSCSCCEEEEEEEEHHHHHH
T ss_pred Cccc--cCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccC--CcccccccCCceEEEEECCccccc
Confidence 1111 1100 00 0 12345789999999999999999975322 122 56899999999995 8
Q ss_pred CcccHHHHHHHHHcCCC--eEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHH
Q psy2375 234 EPESISEISMAAREKLD--NLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKK 311 (929)
Q Consensus 234 eg~~~eAl~~A~~~~L~--nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~ 311 (929)
||.+|||||+|+.++|+ |+||||++|++.+++|.... ...+...++++++||.++.|
T Consensus 292 eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~-~s~~~~~~~a~a~G~p~~~V-------------------- 350 (868)
T 2yic_A 292 QGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDS-RSSEYCTDVAKMIGAPIFHV-------------------- 350 (868)
T ss_dssp CHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHH-CSSSSTTGGGGGGTCCEEEE--------------------
T ss_pred ccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCcccc-ccccCHHHHHHhCCCcEEEE--------------------
Confidence 99999999999999999 99999999999999986532 12234566899999999998
Q ss_pred HHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEe
Q psy2375 312 IMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIK 388 (929)
Q Consensus 312 ~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~ 388 (929)
||||+++|++|++.|++. .++|++|+++
T Consensus 351 -------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~~PvlIe~~ 381 (868)
T 2yic_A 351 -------------------------------------------------NGDDPEACAWVARLAVDFRQAFKKDVVIDML 381 (868)
T ss_dssp -------------------------------------------------ETTCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred -------------------------------------------------eCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 899999999999999752 3789999999
Q ss_pred eecccCCccCCCCCcccccccCCCHHHHH----------HHHhhc---CCCCCCcccccCCCCCCCCCcHHHH-HHHH-H
Q psy2375 389 SIKGYGLGRFGEARNTAHNIKKIDHQGIK----------SIRDFL---KLPIPDSELSLVPFYKPSKNSPEIQ-YLKN-C 453 (929)
Q Consensus 389 T~KG~G~~~~~e~~~~~H~~~~l~~~~~~----------~~r~~~---~~p~~d~~~~~~~f~~~~~~~~~~~-~~~~-~ 453 (929)
|+|++||+.+ .. .... .+++.+ .+++++ |+ ++++++++. ..+++ .+.+ .
T Consensus 382 tyR~~GHs~~-D~-p~~~-----~p~~~~~~~~~~dPi~~~~~~L~~~G~-~t~ee~~~i--------~~e~~~~v~~a~ 445 (868)
T 2yic_A 382 CYRRRGHNEG-DD-PSMT-----QPYMYDVIDTKRGSRKAYTEALIGRGD-ISMKEAEDA--------LRDYQGQLERVF 445 (868)
T ss_dssp CCCCSCSSTT-CC-GGGT-----CHHHHHHHTTCCCHHHHHHHHHHHTTS-SCHHHHHHH--------HHHHHHHHHHHH
T ss_pred eecCCCcCcc-cc-cccC-----ChHHHHHHHhCCCHHHHHHHHHHHcCC-CCHHHHHHH--------HHHHHHHHHHHH
Confidence 9999999863 22 1111 122222 222222 22 222222100 00000 0000 0
Q ss_pred HHHhC-CC-CCcccc----cccccccCCC---hHHHhh---hh----ccccccCc----ccHHH----------HHHHHH
Q psy2375 454 RKKLG-GY-LPKRRQ----KSDEKLLIPP---LEAFKK---IL----EPTLNERK----ISTTY----------AYVRIL 503 (929)
Q Consensus 454 ~~~l~-g~-~p~~~~----~~~~~l~~P~---~~~f~~---~~----~~~~~~~~----~str~----------af~~~L 503 (929)
..+.. .. .|..+. ......+.++ .+.... .+ ++..-.+. ..+|. ++++.|
T Consensus 446 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~l 525 (868)
T 2yic_A 446 NEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELL 525 (868)
T ss_dssp HHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHH
T ss_pred HHHHhcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 00000 00 000000 0000000000 000100 00 00000011 13342 455554
Q ss_pred H--HHHhccCCCCceeeeecCCCCCcCccccchhccccc-ccCcccccCChhh---hhHHHhhcCCceEeccccchhhHH
Q psy2375 504 N--TILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFS-QVGQLYDPVDKDQ---VIYYREEKNGQILQEGINEAGGMG 577 (929)
Q Consensus 504 ~--~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~-~~gq~~~~~d~~~---~~~~~e~~~gR~~~~GIaE~~~~~ 577 (929)
. .|+.+ +++|+.++.|.+++|-.. |-.-+++ ..|..|.|.+. + ....++.+|.||+|+||+|+++++
T Consensus 526 a~~~l~~~---~~~V~~~G~Dv~~~Tfs~---rh~v~~d~~~g~~~~~~~~-l~~~~~~~~~~~p~Rv~ds~IsE~~~vG 598 (868)
T 2yic_A 526 ALGSLIAE---GKLVRLSGQDTQRGTFTQ---RHAVIVDRKTGEEFTPLQL-LATNPDGTPTGGKFLVYNSALSEFAAVG 598 (868)
T ss_dssp HHHHHHHT---TCEEEEEETTTTTCTTSC---CCSSEECTTTCCEECGGGG-GGBCTTSCBCSCEEEEEECCSCSHHHHH
T ss_pred HHHHHHhc---CCCEEEEcCcCCccchhh---cchhccccCCCceecchhh-hcccccchhhcCCcEEEECCccHHHHHH
Confidence 4 56666 667899999998853110 0000111 13445555431 0 000233679999999999999888
Q ss_pred HHHHHHHHHhccCCCceE-EEEeehhhHHHhH---HHHHHHhhhh---cCCcEEEEeecCCeeecCCCCCCCC--hhhHH
Q psy2375 578 SWIAAATSYSTSNCIMIP-FFTFYSMFGLQRI---GDLAWLAGDI---RARGFLIGGTSGRTTINGEGLQHED--GHSHV 648 (929)
Q Consensus 578 ~~iAag~g~A~~G~~~iP-f~~~ys~F~~qR~---~d~i~~~~~~---~~~~v~i~~t~~~~~~g~dG~tHq~--~ed~~ 648 (929)
+ |+ |||+.|...+| +.+.|+.|. +|+ +||+...+.+ +..++++...+|+ . ++|+||++ .|++.
T Consensus 599 ~--a~--G~A~~G~~~~~i~eaqf~dF~-~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~--~-G~Gp~Hs~~~~E~~l 670 (868)
T 2yic_A 599 F--EY--GYSVGNPDAMVLWEAQFGDFV-NGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH--E-GQGPDHTSGRIERFL 670 (868)
T ss_dssp H--HH--HHHHHCTTSEEEEECSSGGGG-GGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC--S-SSCTTSSCCCHHHHH
T ss_pred H--HH--HHHccCCCCceEEEEehHHHH-hhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC--C-CCChhhcCCcHHHHH
Confidence 6 44 58888843444 558999994 554 9998766532 2346777778876 3 49999987 89999
Q ss_pred HHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC--CCCCCCCCCCc--cccc--ccccceEE---Eecc
Q psy2375 649 LASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM--NENYSHPGLKK--GQEK--GIIKGLYL---LKNH 719 (929)
Q Consensus 649 l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~--~e~~~~p~~~~--~~~~--~i~~G~y~---l~~g 719 (929)
.++++|||+|+.|+|+.++.++|+.++.+.. ++ |++++.++. +.+...|.+.+ ...+ .+.++ .+ +++
T Consensus 671 ~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~-~~-Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~-~~~~~l~~- 746 (868)
T 2yic_A 671 QLWAEGSMTIAMPSTPANYFHLLRRHGKDGI-QR-PLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEP-MYTDGEGD- 746 (868)
T ss_dssp HHCCTTSCEEECCCSHHHHHHHHHHHHHSSC-CC-CEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCH-HHHTSSCC-
T ss_pred hcCCCCCCEEEEeCCHHHHHHHHHHHHhcCC-CC-cEEEEechHHhCCCCCCCCccccCCCCceecCCcc-eeeccccc-
Confidence 9999999999999999999999999887611 13 377665543 21111121100 0001 12111 11 222
Q ss_pred CCcCCCCcE--EEEEeChhHHHHH-HHHHHhccCC-CceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhcc
Q psy2375 720 NNEKSKLKV--QLIGSGAILREIL-ASKILLQEWD-IDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEK 795 (929)
Q Consensus 720 ~~~~~g~dv--~Lia~G~~v~~al-AAe~L~~~~G-I~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~ 795 (929)
|.|| +||++|.+ ..++ ||+ +++ | |+++||++.+++|||.+.+ .+.++.
T Consensus 747 -----g~dv~r~Ii~~G~~-~~~l~aa~--~~~-g~i~v~VIdl~~l~Pld~~~i-------------------~~~~~k 798 (868)
T 2yic_A 747 -----RNKVTRLLLTSGKI-YYELAARK--AKE-NREDVAIVRIEQLAPLPRRRL-------------------AETLDR 798 (868)
T ss_dssp -----GGGCCEEEEECSTH-HHHHHHHH--HHH-TCTTEEEEEECEEESCCHHHH-------------------HHHHHT
T ss_pred -----CCceeEEEEEecHH-HHHHHHHH--HhC-CCCCEEEEEeeecCCCCHHHH-------------------HHHHHh
Confidence 4689 99999998 7788 776 666 8 9999999999999998753 445556
Q ss_pred CCCc---EEEEecccc--hhHHHHHhhccC-C----CcEEEEec-Ccccc-cCC
Q psy2375 796 SIGP---IIVATDYMR--LFAEQVRAFIPK-G----RIYKVLGT-DGFGC-SDT 837 (929)
Q Consensus 796 ~~~~---vVtved~~~--~~~~~i~~~l~~-~----~~~~~lG~-d~Fg~-sgs 837 (929)
+ +. ||+++|+.. |+++.|.+.+.+ . .++.++|. |.|.. +|+
T Consensus 799 ~-~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~ 851 (868)
T 2yic_A 799 Y-PNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGS 851 (868)
T ss_dssp C-TTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSC
T ss_pred c-CCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCC
Confidence 5 44 899998865 677777665543 1 36788999 77766 444
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.3e-41 Score=426.11 Aligned_cols=619 Identities=13% Similarity=0.062 Sum_probs=364.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccC---CCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHH
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALVIRANKI---DSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGV 146 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v~~a~~~---~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~ 146 (929)
.++.+++.+.++.+++...++........ ..+.-|+-+...++..+....-. + ..+|+|+.-.|-.-+
T Consensus 359 ~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~--l------~~~D~v~gm~hRg~~- 429 (1113)
T 2xt6_A 359 KPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAE--H------GLDEVVIAMPHRGRL- 429 (1113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHH--T------TCSEEEEECCSTTHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhh--C------CCCCEEEeccccchH-
Confidence 35677777777777777777663222211 12335666666666554432111 1 247888877676622
Q ss_pred HHHHHH--cCCCCHHHHh-hhccccC-----CC-CCCCCCCCCC-----CC-C------ccccCcccCchhHHHHHHHHH
Q psy2375 147 YARAFL--EGRLTEEQMI-NFRQEVD-----GY-GLSSYPHPKL-----MP-K------FWQFPTVSMGLGPLTAIHQAR 205 (929)
Q Consensus 147 Ya~~~l--~Gr~~~~~l~-~fR~~~~-----~~-gl~~~p~p~~-----~p-~------~~~f~tgs~G~g~~~Aig~A~ 205 (929)
+.+. .| .+.+++. .|..... |+ ..+. |-.. .+ + .....++|+|.|++.|+|+|+
T Consensus 430 --~~La~~~G-~~~~~i~ae~~G~~~g~~~~g~gdv~~--Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~ 504 (1113)
T 2xt6_A 430 --NVLANIVG-KPYSQIFSEFEGNLNPSQAHGSGDVKY--HLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVR 504 (1113)
T ss_dssp --HHHHHTTC-CCHHHHSTTC-------------CGGG--TCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHH
T ss_pred --HHHHHHhC-CCHHHHHHHhcCCCCCCccCCCCCccc--cCCccccccccCCCcceeeeecCCCccccccccHHHHHHH
Confidence 2333 55 3444432 2322110 11 1111 1100 00 0 123457899999999999999
Q ss_pred HHHHHhhccccCC-----CCcEEEEEEcCCcc-CCcccHHHHHHHHHcCCC--eEEEEEecCCCcccccccccccchHHH
Q psy2375 206 FLKYLHARKITNT-----INRKIWILCGDGEM-DEPESISEISMAAREKLD--NLIMIVNCNLQRLDGPVRGNSKIIQEL 277 (929)
Q Consensus 206 a~kyl~~r~~~~~-----~~~~v~~~~GDGe~-~eg~~~eAl~~A~~~~L~--nli~vvn~N~~~idg~v~~~~~~~~~l 277 (929)
|.++.... .+. .+..+||++|||++ +||.+|||+|+|+.++|+ |+||||++|++.+++|+... ...+..
T Consensus 505 A~k~~~~~--~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~-~s~~~~ 581 (1113)
T 2xt6_A 505 AKQDLLDT--GEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDS-RSSEYC 581 (1113)
T ss_dssp HHHHHTTB--STTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHH-CSSSST
T ss_pred HHHHhccc--cCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCcccc-ccccCH
Confidence 99985432 122 57899999999995 999999999999999999 99999999999999986532 122345
Q ss_pred HHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCcccccc
Q psy2375 278 EAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWN 357 (929)
Q Consensus 278 ~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~ 357 (929)
.++++++||+++.|
T Consensus 582 ~~~a~a~G~p~~~V------------------------------------------------------------------ 595 (1113)
T 2xt6_A 582 TDVAKMIGAPIFHV------------------------------------------------------------------ 595 (1113)
T ss_dssp TGGGGGGTCCEEEE------------------------------------------------------------------
T ss_pred HHHHHhcCCcEEEE------------------------------------------------------------------
Confidence 57899999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhC---CCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHH----------HHHhhc-
Q psy2375 358 LTFGGHDLRKIYSAFKMAQKN---KDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIK----------SIRDFL- 423 (929)
Q Consensus 358 l~~dGhD~~~v~~a~~~a~~~---~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~----------~~r~~~- 423 (929)
||||+++|++|++.|++. .++|++|+++|+|++|++.+ +..... .+++.+ .+++++
T Consensus 596 ---dG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~--D~p~~~-----~~~~~~~~~~~~dpi~~~~~~L~ 665 (1113)
T 2xt6_A 596 ---NGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEG--DDPSMT-----QPYMYDVIDTKRGSRKAYTEALI 665 (1113)
T ss_dssp ---ETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTT--CCGGGT-----CHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCC--CccccC-----ChHHHHHHHhcCCHHHHHHHHHH
Confidence 899999999999998762 37899999999999999863 222211 122222 233222
Q ss_pred --CCCCCCcccccCCCCCCCCCcHHH-HHHHH---HHHHhCCC-CCcccccccccc----cCCC---hHHHhh---hhc-
Q psy2375 424 --KLPIPDSELSLVPFYKPSKNSPEI-QYLKN---CRKKLGGY-LPKRRQKSDEKL----LIPP---LEAFKK---ILE- 485 (929)
Q Consensus 424 --~~p~~d~~~~~~~f~~~~~~~~~~-~~~~~---~~~~l~g~-~p~~~~~~~~~l----~~P~---~~~f~~---~~~- 485 (929)
|+ ++++++++. ..++ +.+.+ ..++.. . .|..+......+ +.++ .+.... .+.
T Consensus 666 ~~G~-~t~ee~~~i--------~~e~~~~v~~a~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~ 735 (1113)
T 2xt6_A 666 GRGD-ISMKEAEDA--------LRDYQGQLERVFNEVRELE-KHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLA 735 (1113)
T ss_dssp HHTS-SCHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHC----------------CCCCCCHHHHHHHHHHTTC
T ss_pred HcCC-CCHHHHHHH--------HHHHHHHHHHHHHHHHhcC-CCCcccccccccccccccCCCCccCHHHHHHHHHhhcc
Confidence 22 222222110 0000 00100 000000 0 000010000000 0000 000100 000
Q ss_pred ---ccc-c---cCcccHH--H--------HHHHHH--HHHHhccCCCCceeeeecCCCCCcCccccchhccccc-ccCcc
Q psy2375 486 ---PTL-N---ERKISTT--Y--------AYVRIL--NTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFS-QVGQL 545 (929)
Q Consensus 486 ---~~~-~---~~~~str--~--------af~~~L--~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~-~~gq~ 545 (929)
+.. . .+....| | ++.+.| ..|+.+ +++|+.++.|.++++-.. |-.-+++ ..|..
T Consensus 736 ~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~---~~~V~l~GeDv~rgtfs~---rh~v~~d~~~g~~ 809 (1113)
T 2xt6_A 736 LPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAE---GKLVRLSGQDTQRGTFTQ---RHAVIVDRKTGEE 809 (1113)
T ss_dssp CCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHT---TCEEEEEETTTTTCTTSC---CCSSEECTTTCCE
T ss_pred CCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhc---CCCEEEEcccCCCccchh---cchheecccCCce
Confidence 000 0 0001122 1 122222 245666 667899999998842100 0000111 13445
Q ss_pred cccCChhh---hhHHHhhcCCceEeccccchhhHHHHHHHHHHHhccCCCceE-EEEeehhhHHHh--HHHHHHHhhh--
Q psy2375 546 YDPVDKDQ---VIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIP-FFTFYSMFGLQR--IGDLAWLAGD-- 617 (929)
Q Consensus 546 ~~~~d~~~---~~~~~e~~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iP-f~~~ys~F~~qR--~~d~i~~~~~-- 617 (929)
|.|.+. + ....++.+|.|++|+||+|++++++ |+ |||+.|...+| +-+.|+.|...+ ++||+...+.
T Consensus 810 ~~~l~~-l~~~~~~~~~~~p~rv~ds~IsE~~~vg~--a~--G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k 884 (1113)
T 2xt6_A 810 FTPLQL-LATNPDGTPTGGKFLVYNSALSEFAAVGF--EY--GYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAK 884 (1113)
T ss_dssp ECGGGG-GGBCTTSCBCSCEEEEEECCSCSHHHHHH--HH--HHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHH
T ss_pred ecchhc-cccccccchhcCCcEEEECCCCHHHHHHH--HH--HHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHH
Confidence 555431 0 0002236799999999999998886 44 58888833444 448999995333 4999866552
Q ss_pred -hcCCcEEEEeecCCeeecCCCCCCCC--hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC--
Q psy2375 618 -IRARGFLIGGTSGRTTINGEGLQHED--GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM-- 692 (929)
Q Consensus 618 -~~~~~v~i~~t~~~~~~g~dG~tHq~--~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~-- 692 (929)
.+..++++...+|+ . ++|+||++ .+++..++++|||+|+.|+|+.|+.++|+.++.+.. ++ |++++.++.
T Consensus 885 ~~~~~~vv~~lp~G~--~-G~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~-~~-Pvii~~pk~L~ 959 (1113)
T 2xt6_A 885 WGQLSDVVLLLPHGH--E-GQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGI-QR-PLIVFTPKSML 959 (1113)
T ss_dssp HCCCCCCEEEEECCC--S-SSCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSC-CC-CEEEEECSGGG
T ss_pred hCCCCCEEEEeCCCC--C-CCChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccC-CC-CEEEEechHHh
Confidence 22446777778876 3 49999988 788888899999999999999999999999887611 12 377766643
Q ss_pred CCCCCCCCCCc--cccc--ccccceEE---EeccCCcCCCCcE--EEEEeChhHHHHH-HHHHHhccCC-CceEEEEccc
Q psy2375 693 NENYSHPGLKK--GQEK--GIIKGLYL---LKNHNNEKSKLKV--QLIGSGAILREIL-ASKILLQEWD-IDSAVWSATS 761 (929)
Q Consensus 693 ~e~~~~p~~~~--~~~~--~i~~G~y~---l~~g~~~~~g~dv--~Lia~G~~v~~al-AAe~L~~~~G-I~a~Vvsv~s 761 (929)
+.+...|...+ ...+ .+.++ .+ +++ |.|| +||++|.+ ..++ ||+ +++ | |+++||++.+
T Consensus 960 R~~~~~~~~~~~~~~~f~~~ig~~-~~~~~l~~------g~dv~r~iv~~G~~-~~~l~aa~--~~~-g~i~v~VIdl~~ 1028 (1113)
T 2xt6_A 960 RNKAAVSDIRDFTESKFRSVLEEP-MYTDGEGD------RNKVTRLLLTSGKI-YYELAARK--AKE-NREDVAIVRIEQ 1028 (1113)
T ss_dssp SCSSSCBCHHHHHSCCCCSEECCH-HHHTSCCC------STTCCEEEEECSTH-HHHHHHHH--HHH-TCTTEEEEEESE
T ss_pred CCCCCCCcccccCCCCccccCCcc-eeeccccC------ccccCEEEEEECHH-HHHHHHHH--HhC-CCCCEEEEEeee
Confidence 21111121100 0001 12121 11 222 4689 99999998 7888 777 566 8 9999999999
Q ss_pred ccccccchhhhhhhhccCCCccchHHHHHHHhccCCCc---EEEEecccc--hhHHHHHhhccC-----CCcEEEEec-C
Q psy2375 762 FTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGP---IIVATDYMR--LFAEQVRAFIPK-----GRIYKVLGT-D 830 (929)
Q Consensus 762 ~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~---vVtved~~~--~~~~~i~~~l~~-----~~~~~~lG~-d 830 (929)
++|||.+.+ .+.++.+ +. +|+++|+.. |+++.|.+.+.+ ..++.++|. |
T Consensus 1029 l~Pld~~~i-------------------~~~~~k~-~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~vg~~d 1088 (1113)
T 2xt6_A 1029 LAPLPRRRL-------------------AETLDRY-PNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRA 1088 (1113)
T ss_dssp EESCCHHHH-------------------HHHHTTC-TTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEEEEECC
T ss_pred ecCCCHHHH-------------------HHHHHhC-CCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEEEccCC
Confidence 999998753 4555666 45 899998865 677777665543 036788999 7
Q ss_pred cccc-cCCh
Q psy2375 831 GFGC-SDTR 838 (929)
Q Consensus 831 ~Fg~-sgs~ 838 (929)
.|.. +|+.
T Consensus 1089 ~~~p~~g~~ 1097 (1113)
T 2xt6_A 1089 MSAPSSGSS 1097 (1113)
T ss_dssp CSSSSCSCH
T ss_pred cCCCCCCCH
Confidence 7765 4443
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=2.3e-39 Score=365.39 Aligned_cols=297 Identities=15% Similarity=0.133 Sum_probs=199.6
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEeccc
Q psy2375 492 KISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEGI 570 (929)
Q Consensus 492 ~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~GI 570 (929)
++++|++|+++|.++++. +++||++++|++++.|.-+ + +..+++.| |+|+||+||
T Consensus 50 ~~~~~~a~~~aL~~l~~~---d~~vv~~~~D~~~~~g~~~----------------~-----~~~~~~~~gp~r~~d~gI 105 (369)
T 1ik6_A 50 MANMAKAINMALHEEMER---DERVVVLGEDVGKKGGVFL----------------V-----TEGLYERFGPERVIDTPL 105 (369)
T ss_dssp EECHHHHHHHHHHHHHHH---CTTEEEEEC---------C----------------T-----TTTHHHHHCTTTEEECCS
T ss_pred cccHHHHHHHHHHHHHcc---CCCEEEECCcccccCCcch----------------h-----HHHHHHHhCCCcEEECcc
Confidence 468999999999999998 6667999999986433210 0 01345677 999999999
Q ss_pred cchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhc--------CCcEEEEeecCCeeecCCCCCC
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIR--------ARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~--------~~~v~i~~t~~~~~~g~dG~tH 641 (929)
+|++|+++ |+ |+|.+| ++||+. +|++| +||++||++..++.+ ..++++++++++. .++|+||
T Consensus 106 aE~~~v~~--a~--G~A~~G--~rpv~~~tf~~F-l~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g~g~~h 176 (369)
T 1ik6_A 106 NEGGILGF--AM--GMAMAG--LKPVAEIQFVDF-IWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TRGGLYH 176 (369)
T ss_dssp CHHHHHHH--HH--HHHHTT--CEEEEECCCC-----CCHHHHHHHHHHHHC------CCCCEEEEEECC----------
T ss_pred cHHHHHHH--HH--HHHHCC--CeeEEEecchhH-HHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CCCCccc
Confidence 99998886 44 588888 999996 79999 599999998754422 4467777888873 3478777
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccc-eEEEeccC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKG-LYLLKNHN 720 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G-~y~l~~g~ 720 (929)
+.. +.++++++|||+|++|+|++|+..+++.+++. ++ |++++.++.--....+.++... ..+..| .++++++
T Consensus 177 s~~-~~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~~---~~-Pv~i~~p~~l~r~~~~~v~~~~-~~~~~G~~~v~~~g- 249 (369)
T 1ik6_A 177 SNS-PEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRG---DD-PVVFLEPKILYRAPREEVPEGD-YVVEIGKARVAREG- 249 (369)
T ss_dssp ----HHHHHHTCTTCEEECCCSHHHHHHHHHHHHHS---SS-CEEEEEEGGGSSCCCEEEECSS-CCCCTTCCEEEECC-
T ss_pred ccc-HHHHHcCCCCcEEEecCCHHHHHHHHHHHHhC---CC-CEEEEEehhhhccCCCCcCCCc-ccccCCceEEEEcC-
Confidence 765 57999999999999999999999999999985 33 3888776532100011222211 123334 4677663
Q ss_pred CcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCc
Q psy2375 721 NEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGP 799 (929)
Q Consensus 721 ~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~ 799 (929)
.|++||++|+++..|+ |++.|+ | +++|||++|++|||++.+ .+.+..+ +.
T Consensus 250 -----~dv~Iia~G~~v~~a~~Aa~~L~---G-~v~Vi~~~~l~P~d~~~i-------------------~~~~~~~-~~ 300 (369)
T 1ik6_A 250 -----DDVTLVTYGAVVHKALEAAERVK---A-SVEVVDLQTLNPLDFDTV-------------------LKSVSKT-GR 300 (369)
T ss_dssp -----SSEEEEECTTHHHHHHHHHHTSS---S-CEEEEECCEEETTCHHHH-------------------HHHHHHH-CC
T ss_pred -----CCEEEEEeCHHHHHHHHHHHHhC---C-CeEEEeeeecCCCCHHHH-------------------HHHHhcc-Ce
Confidence 6999999999999999 999995 8 999999999999998642 3344444 47
Q ss_pred EEEEecccc--hhHHHHHhhccC-C-----CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 800 IIVATDYMR--LFAEQVRAFIPK-G-----RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 800 vVtved~~~--~~~~~i~~~l~~-~-----~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
+|++||+.. |+++.|++++.+ + .++.++|+ |.|+.+++ |+++||+|++.|+++++..+
T Consensus 301 vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l 367 (369)
T 1ik6_A 301 LIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVM 367 (369)
T ss_dssp EEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHH
T ss_pred EEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHh
Confidence 899999964 788888887753 2 35689999 89999988 99999999999999887654
No 20
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.7e-38 Score=353.17 Aligned_cols=299 Identities=13% Similarity=0.084 Sum_probs=227.6
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEeccc
Q psy2375 492 KISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEGI 570 (929)
Q Consensus 492 ~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~GI 570 (929)
++++|++|+++|.+++++ +++||++++|++++.|+- +.+ ..|++.| |+|+||+||
T Consensus 3 ~~~~~~a~~~~l~~l~~~---~~~vv~~~~D~~~~~g~~---~~~------------------~~~~~~~gp~r~~~~gI 58 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAK---DPRVVVLGEDVGKRGGVF---LVT------------------EGLLQKYGPDRVMDTPL 58 (324)
T ss_dssp EECHHHHHHHHHHHHHHH---CTTEEEEETTCSTTCCTT---STT------------------TTHHHHHCTTTEEECCS
T ss_pred CCcHHHHHHHHHHHHHhc---CCCEEEECCcccccCCcc---hhh------------------HHHHHHhCCCcEEECch
Confidence 468999999999999998 666899999998754331 111 1355778 999999999
Q ss_pred cchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhh--------cCCcEEEEeecCCeeecCCCCCC
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDI--------RARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~--------~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
+|++|+++ |+ |+|.+| ++||+. +|++| ++|++||++..++. ...+++++.++++ .+.+|++|
T Consensus 59 aE~~~v~~--a~--G~A~~G--~~p~~~~t~~~F-~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~--~~~~g~~h 129 (324)
T 1umd_B 59 SEAAIVGA--AL--GMAAHG--LRPVAEIQFADY-IFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGG--GVRGGHHH 129 (324)
T ss_dssp CHHHHHHH--HH--HHHHHT--CEEEEECSSGGG-CGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECS--SSSCGGGS
T ss_pred hHHHHHHH--HH--HHHHCC--CEEEEEeccHhH-HHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCC--CCCCCCcc
Confidence 99998886 44 477888 999996 79999 69999999875442 3334555555442 34556666
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccc-eEEEeccC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKG-LYLLKNHN 720 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G-~y~l~~g~ 720 (929)
+. +|+++++++||++|++|+|++|+..+++.+++. ++ |++++.++.--....+.+++.. ..+..| .++++++
T Consensus 130 s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~-Pv~i~~p~~l~~~~~~~~~~~~-~~~~~Gk~~~~~~g- 202 (324)
T 1umd_B 130 SQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRD---ED-PVVFLEPKRLYRSVKEEVPEED-YTLPIGKAALRREG- 202 (324)
T ss_dssp SC-CCHHHHHTSTTCEEEECCSHHHHHHHHHHHHHC---SS-CEEEEEEGGGSSSCCEECCSSC-CCCCTTCCEEEECC-
T ss_pred ch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHhc---CC-CEEEEechHhcCCCCCCcCCCC-ccccCCcceEEecC-
Confidence 65 899999999999999999999999999999985 23 4888766431100012233221 123334 5667663
Q ss_pred CcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCc
Q psy2375 721 NEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGP 799 (929)
Q Consensus 721 ~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~ 799 (929)
.|++||++|++++.|+ |++.|+++ ||+++|||++|++|||++.+ .+.+.++ +.
T Consensus 203 -----~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~~i-------------------~~~~~~~-~~ 256 (324)
T 1umd_B 203 -----KDLTLICYGTVMPEVLQAAAELAKA-GVSAEVLDLRTLMPWDYEAV-------------------MNSVAKT-GR 256 (324)
T ss_dssp -----SSEEEEECGGGHHHHHHHHHHHHHT-TCCEEEEECCEEETCCHHHH-------------------HHHHHHH-SC
T ss_pred -----CCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEEeceecCCCHHHH-------------------HHHHhcC-Ce
Confidence 6999999999999999 99999998 99999999999999988642 3344444 57
Q ss_pred EEEEecccc--hhHHHHHhhccC-C-----CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 800 IIVATDYMR--LFAEQVRAFIPK-G-----RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 800 vVtved~~~--~~~~~i~~~l~~-~-----~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
+|++|++.. |+++.|++++.+ + .++.++|+ |.|+.++ |+++||+|+++|+++++..+
T Consensus 257 vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~I~~~i~~~l 322 (324)
T 1umd_B 257 VVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTRILNAAKRAL 322 (324)
T ss_dssp EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHHHHHHHHHH
T ss_pred EEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHHHHHHHHHHh
Confidence 999999963 788888776653 1 46789999 8999998 99999999999998876543
No 21
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.3e-38 Score=355.98 Aligned_cols=303 Identities=13% Similarity=0.084 Sum_probs=234.1
Q ss_pred ccCcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEe
Q psy2375 489 NERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQ 567 (929)
Q Consensus 489 ~~~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~ 567 (929)
+.+++++|.+|+++|.+++++ +++|+++++|++++.+. |.+. ..+++.| |+||+|
T Consensus 11 ~~~~~~~~~a~~~~L~~l~~~---~~~vv~~~~D~~~~g~~----------------~~~~-----~~~~~~~gp~r~~d 66 (341)
T 2ozl_B 11 GSLQVTVRDAINQGMDEELER---DEKVFLLGEEVAQYDGA----------------YKVS-----RGLWKKYGDKRIID 66 (341)
T ss_dssp -CCEEEHHHHHHHHHHHHHHH---CTTEEEEETTSSTTCCT----------------TSTT-----TTHHHHHCTTTEEE
T ss_pred CcccccHHHHHHHHHHHHHhh---CCCEEEECCcccccCCc----------------chhH-----HHHHHHhCCCcEEE
Confidence 456789999999999999988 66679999999853211 1111 1255678 999999
Q ss_pred ccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhh---h-----cCCcEEEEeecCCeeecCCC
Q psy2375 568 EGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGD---I-----RARGFLIGGTSGRTTINGEG 638 (929)
Q Consensus 568 ~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~---~-----~~~~v~i~~t~~~~~~g~dG 638 (929)
+||+|++|+++ |+ |+|.+| ++||+. +|+.| +||++||++.+++ | +..++++++++| ..+++|
T Consensus 67 ~gIaE~~~v~~--a~--G~A~~G--~rp~~~~~f~~F-~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G--~~g~~G 137 (341)
T 2ozl_B 67 TPISEMGFAGI--AV--GAAMAG--LRPICEFMTFNF-SMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNG--ASAGVA 137 (341)
T ss_dssp CCSCHHHHHHH--HH--HHHHTT--CEEEEECSSGGG-GGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECS--CCSSCC
T ss_pred CchhHHHHHHH--HH--HHHHCC--CEEEEEeccHHH-HHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCc--CCCCCC
Confidence 99999998886 44 588888 999997 79999 5999999987765 2 444677778874 567899
Q ss_pred CCC-CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCC--CCCCC-CCCCcccccccccc-e
Q psy2375 639 LQH-EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMN--ENYSH-PGLKKGQEKGIIKG-L 713 (929)
Q Consensus 639 ~tH-q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~--e~~~~-p~~~~~~~~~i~~G-~ 713 (929)
+|| |..+ ++++++|||+|++|+|++|+..+++.+++. ++ |+++|+++.. ...++ |.+++. ...+..| .
T Consensus 138 ~tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~-Pv~i~~~~~~~~~~~~v~p~~~~~-~~~~~~Gk~ 210 (341)
T 2ozl_B 138 AQHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD---NN-PVVVLENELMYGVPFEFPPEAQSK-DFLIPIGKA 210 (341)
T ss_dssp GGGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS---SS-CEEEEECHHHHTCEEECCHHHHST-TCCCCTTCC
T ss_pred cchhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc---CC-CEEEEEChhhhcCCCCcCCccCCc-cccccCCce
Confidence 999 6664 999999999999999999999999999987 22 4899988642 00001 112221 1123334 5
Q ss_pred EEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHH
Q psy2375 714 YLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKS 792 (929)
Q Consensus 714 y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~ 792 (929)
++++++ .|++||++|+++..|+ |++.|+++ ||+++||++++++|||++.+ .+.
T Consensus 211 ~v~~~g------~dv~iia~Gs~~~~a~~Aa~~L~~~-Gi~v~vv~~~~l~P~d~~~i-------------------~~~ 264 (341)
T 2ozl_B 211 KIERQG------THITVVSHSRPVGHCLEAAAVLSKE-GVECEVINMRTIRPMDMETI-------------------EAS 264 (341)
T ss_dssp EEEECC------SSEEEEECSTHHHHHHHHHHHHHTT-TCCEEEEECCEEETCCHHHH-------------------HHH
T ss_pred EEeccC------CCEEEEEeCHHHHHHHHHHHHHHhc-CCCeEEEeeeeecCCCHHHH-------------------HHH
Confidence 677663 6899999999999999 99999998 99999999999999987642 344
Q ss_pred hccCCCcEEEEecccc--hhHHHHHhhccC-C------CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 793 LEKSIGPIIVATDYMR--LFAEQVRAFIPK-G------RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 793 l~~~~~~vVtved~~~--~~~~~i~~~l~~-~------~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
+..+ +.+|++|++.. ++++.|++++.+ . .++.++|+ |.|+.+++ .|.++||+|++.|+++++..+
T Consensus 265 ~~~~-~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g~~~~~I~~~i~~~l 339 (341)
T 2ozl_B 265 VMKT-NHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIPQVKDIIFAIKKTL 339 (341)
T ss_dssp HHHH-SCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSCCHHHHHHHHHHHH
T ss_pred HhcC-CeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhCcCHHHHHHHHHHHh
Confidence 4444 57999999973 788888777653 1 46789999 89999987 688999999999998876654
No 22
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=1.5e-37 Score=345.43 Aligned_cols=298 Identities=16% Similarity=0.088 Sum_probs=225.5
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEecccc
Q psy2375 493 ISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEGIN 571 (929)
Q Consensus 493 ~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~GIa 571 (929)
+++|++|+++|.+++++ +++||++++|++.+.|.-+ .+ ..+++.| |+|++|+||+
T Consensus 3 ~~~~~a~~~~L~~l~~~---~~~vv~~~~d~~~~~g~~~---~~------------------~~~~~~~gp~r~~~~gIa 58 (324)
T 1w85_B 3 MTMVQAITDALRIELKN---DPNVLIFGEDVGVNGGVFR---AT------------------EGLQAEFGEDRVFDTPLA 58 (324)
T ss_dssp ECHHHHHHHHHHHHHHH---CTTEEEEETTCSTTCCTTS---TT------------------TTHHHHHCTTTEEECCSC
T ss_pred chHHHHHHHHHHHHHhH---CcCEEEEcCcccccCCcch---hH------------------HHHHHHhCCCcEEEcchh
Confidence 58999999999999988 6667999999986433311 00 1355678 9999999999
Q ss_pred chhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhh---------hcCCcEEEEeecCCeeecCCCCCC
Q psy2375 572 EAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGD---------IRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 572 E~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~---------~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
|++|+++ |+ |+|.+| ++||+. +|+.| ++|++||++..++ ++.| ++++..++ ..+.+|+||
T Consensus 59 E~~~v~~--a~--G~A~~G--~rp~~~~t~~~F-~~~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~g--~~~~~g~~h 128 (324)
T 1w85_B 59 ESGIGGL--AI--GLALQG--FRPVPEIQFFGF-VYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFG--GGVHTPELH 128 (324)
T ss_dssp HHHHHHH--HH--HHHHTT--CEEEEBCSSGGG-GGGTHHHHHTTGGGHHHHTTTSSCCC-CEEEEEEC--SSSCCCTTS
T ss_pred HHHHHHH--HH--HHHhCC--CEEEEEecchhH-HHHHHHHHHHHHHHHhhhccCCCcCC-EEEEEecc--CCCCCCCcc
Confidence 9998886 44 478888 999996 79999 5999999986544 3444 44433333 234556666
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCCCCCcccccccccc-eEEEeccC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKG-LYLLKNHN 720 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~~e~~~~p~~~~~~~~~i~~G-~y~l~~g~ 720 (929)
+. ++.++++++||++|++|+|+.|+..+++.+++. ++ |++++.++.--....+.+++.. ..+..| .++++++
T Consensus 129 s~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~-Pv~i~~p~~l~r~~~~~~~~~~-~~~~~Gk~~~~~~g- 201 (324)
T 1w85_B 129 SD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRD---ND-PVIFLEHLKLYRSFRQEVPEGE-YTIPIGKADIKREG- 201 (324)
T ss_dssp SC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHHHHS---SS-CEEEEEETTTSSSCCEECCSSC-CCCCTTCCEEEECC-
T ss_pred cc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHHHHc---CC-CEEEEechHhcCCCCCCCCCcc-ccccCCceEEEecC-
Confidence 55 889999999999999999999999999999985 23 4888766432100012222211 123333 5667653
Q ss_pred CcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCc
Q psy2375 721 NEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGP 799 (929)
Q Consensus 721 ~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~ 799 (929)
.|++||++|+++..|+ |++.|+++ ||+++|||+++++|||++.+ .+.+.++ +.
T Consensus 202 -----~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~~i-------------------~~~~~~~-~~ 255 (324)
T 1w85_B 202 -----KDITIIAYGAMVHESLKAAAELEKE-GISAEVVDLRTVQPLDIETI-------------------IGSVEKT-GR 255 (324)
T ss_dssp -----SSEEEEECTTHHHHHHHHHHHHHHT-TCCEEEEECSEEESCCHHHH-------------------HHHHHHH-SC
T ss_pred -----CCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEEeeeecCCCHHHH-------------------HHHHhhC-Cc
Confidence 6999999999999999 99999998 99999999999999988642 3444454 57
Q ss_pred EEEEeccc--chhHHHHHhhccC-C-----CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 800 IIVATDYM--RLFAEQVRAFIPK-G-----RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 800 vVtved~~--~~~~~~i~~~l~~-~-----~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
+|++|++. .++++.|++++.+ + .++.++|+ |.|+.+++ |+++||+|++.|+++++..+
T Consensus 256 vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l 322 (324)
T 1w85_B 256 AIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDVIETAKKVM 322 (324)
T ss_dssp EEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHHHHHHHHHh
Confidence 99999995 3788888877653 1 35789999 89999988 99999999999998876654
No 23
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=1.2e-37 Score=348.58 Aligned_cols=298 Identities=12% Similarity=0.086 Sum_probs=227.7
Q ss_pred CcccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEecc
Q psy2375 491 RKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEG 569 (929)
Q Consensus 491 ~~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~G 569 (929)
+++++|++|+++|.++++. +++|+++++|++. .|. |+.+ ..+++.| |+|++|+|
T Consensus 19 ~~~~~~~a~~~aL~~l~~~---~~~vv~~~~D~~~-~gt---~~~~------------------~~~~~~~gp~r~~~~g 73 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAK---DPTAVIFGEDVAF-GGV---FRCT------------------VGLRDKYGKDRVFNTP 73 (342)
T ss_dssp EEECHHHHHHHHHHHHHHH---CTTCEEEETTTTT-TCT---TSTT------------------TTHHHHHCTTTEEECC
T ss_pred CCccHHHHHHHHHHHHHhc---CCCEEEEcCccCC-Ccc---cchH------------------HHHHHHhCCCeEEEcC
Confidence 4579999999999999998 5567999999873 121 1101 1345677 99999999
Q ss_pred ccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhh-hcC-------C-cEEEEeecCCeeecCCCC
Q psy2375 570 INEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGD-IRA-------R-GFLIGGTSGRTTINGEGL 639 (929)
Q Consensus 570 IaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~-~~~-------~-~v~i~~t~~~~~~g~dG~ 639 (929)
|+|++|+++ |+ |+|.+| ++||+. +|++| ++|++||++..++ ++. . ++++++++++ +++|+
T Consensus 74 IaE~~~v~~--a~--G~A~~G--~rp~~~~tf~~F-~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g---~~~G~ 143 (342)
T 2bfd_B 74 LCEQGIVGF--GI--GIAVTG--ATAIAEIQFADY-IFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC---VGHGA 143 (342)
T ss_dssp SCHHHHHHH--HH--HHHHTT--CCEEEECSSGGG-CGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC---CSSCG
T ss_pred cCHHHHHHH--HH--HHHHCC--CeeEEEecchhH-HHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC---CCCCc
Confidence 999998886 44 588888 999995 89999 7899999985443 222 1 5667778875 36999
Q ss_pred CCCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC--CCCCCCCCCCcccccccccc-eEEE
Q psy2375 640 QHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM--NENYSHPGLKKGQEKGIIKG-LYLL 716 (929)
Q Consensus 640 tHq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~--~e~~~~p~~~~~~~~~i~~G-~y~l 716 (929)
|||+.+|++++|++||++|++|+|+.|+..+++.+++. .+ |++++.++. +.+ .|.++... ..+..| .+++
T Consensus 144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~---Pv~i~~p~~l~r~~--~~~~~~~~-~~~~~G~~~v~ 216 (342)
T 2bfd_B 144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIED-KN---PCIFFEPKILYRAA--AEEVPIEP-YNIPLSQAEVI 216 (342)
T ss_dssp GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHHS-SS---CEEEEEEGGGTTSC--CEEEESSC-CCCCSSCCEEE
T ss_pred chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhc-CC---cEEEEecchhcCCC--CCCCCCcc-cceeCCceEEe
Confidence 99999999999999999999999999999999999986 23 388876632 111 12222211 123334 4666
Q ss_pred eccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhcc
Q psy2375 717 KNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEK 795 (929)
Q Consensus 717 ~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~ 795 (929)
+++ .|++||++|++++.|+ |++.|+++.||+++|||++|++|||++.+ .+.+++
T Consensus 217 ~~g------~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~~l~P~d~~~i-------------------~~~~~~ 271 (342)
T 2bfd_B 217 QEG------SDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI-------------------CKSVIK 271 (342)
T ss_dssp ECC------SSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHH-------------------HHHHHH
T ss_pred ccC------CCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeeeecCCCCHHHH-------------------HHHHhc
Confidence 663 6999999999999999 99999875589999999999999988642 334444
Q ss_pred CCCcEEEEeccc--chhHHHHHhhccC-C-----CcEEEEec-CcccccCChhhHHhhhcceeheeccccccCc
Q psy2375 796 SIGPIIVATDYM--RLFAEQVRAFIPK-G-----RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKIIKVPNI 860 (929)
Q Consensus 796 ~~~~vVtved~~--~~~~~~i~~~l~~-~-----~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~~al~~L 860 (929)
+ +.+|++|++. .++++.|++++.+ + .++.++|+ |.|+.++ |+++||+|++.|+++++..+
T Consensus 272 ~-~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~gl~~~~I~~~i~~~l 340 (342)
T 2bfd_B 272 T-GRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI----FEPFYIPDKWKCYDALRKMI 340 (342)
T ss_dssp H-SCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHHHHHHHHHH
T ss_pred C-CEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH----HHHHHCcCHHHHHHHHHHHh
Confidence 4 5799999985 3788888877653 1 35688999 6688765 99999999999998887654
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=3e-36 Score=336.91 Aligned_cols=296 Identities=13% Similarity=0.090 Sum_probs=225.9
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceeeeecCCCCCcCccccchhcccccccCcccccCChhhhhHHHhhc-CCceEeccc
Q psy2375 492 KISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREEK-NGQILQEGI 570 (929)
Q Consensus 492 ~~str~af~~~L~~L~~~~~i~~rIv~i~aD~~~s~gl~~~f~~~gi~~~~gq~~~~~d~~~~~~~~e~~-~gR~~~~GI 570 (929)
++++|++|+++|.+++++ +++|+++++|++++.|.-+ . +..+++.| |+|++|+||
T Consensus 4 ~~~~~~a~~~~l~~l~~~---~~~vv~~~~D~~~~~g~~~---~------------------~~~~~~~~gp~r~~~~gi 59 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLER---DDNVVVYGQDVGYFGGVFR---C------------------TEGLQTKYGKSRVFDAPI 59 (338)
T ss_dssp ECCHHHHHHHHHHHHHHH---CTTEEEEETTCSSSCCTTS---T------------------TTTHHHHHCTTTEEECCS
T ss_pred cchHHHHHHHHHHHHHhh---CCCEEEECCcccccCCcch---h------------------HHHHHHHhCCCcEEEccc
Confidence 468999999999999988 6667999999987543211 0 11355677 999999999
Q ss_pred cchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhh-hc-------CCcEEEEeecCCeeecCCCCCC
Q psy2375 571 NEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGD-IR-------ARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 571 aE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~-~~-------~~~v~i~~t~~~~~~g~dG~tH 641 (929)
+|++|+++ |+ |+|.+| ++||+. +|+.| +||++||++..++ ++ ..++++++++++ +++|+||
T Consensus 60 sE~~~~~~--a~--G~A~~G--~rp~~~~t~~~F-~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g---~~~G~th 129 (338)
T 1qs0_B 60 SESGIVGT--AV--GMGAYG--LRPVVEIQFADY-FYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG---GIYGGQT 129 (338)
T ss_dssp CHHHHHHH--HH--HHHHHT--CEEEEECSCGGG-CGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC---SSSCCSS
T ss_pred cHHHHHHH--HH--HHHhCC--CEEEEEeccHhH-HHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC---CCCCccc
Confidence 99998886 44 578888 999995 89999 5999999875433 22 245667678875 6899999
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEe----cCCCCC--CCC----------CCCccc
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYIT----VMNENY--SHP----------GLKKGQ 705 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~----~~~e~~--~~p----------~~~~~~ 705 (929)
|+.+|++++|++||++|+.|+|++|+..+++.|++. .+ |++++.+ +.+.+. ..| .+++..
T Consensus 130 ~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-~~---Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (338)
T 1qs0_B 130 HSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-DD---PVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGY 205 (338)
T ss_dssp SSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-SS---CEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSC
T ss_pred ccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-CC---cEEEEEchHhhcCcccccccCccchhhcccccccCCCC
Confidence 999999999999999999999999999999999987 33 3888666 322110 000 122211
Q ss_pred ccccccc-eEEEeccCCcCCCCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCcc
Q psy2375 706 EKGIIKG-LYLLKNHNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKK 783 (929)
Q Consensus 706 ~~~i~~G-~y~l~~g~~~~~g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~ 783 (929)
..+..| .+++++ +.|++||++|++++.|+ |++. + ||+++||+++|++|||++.+
T Consensus 206 -~~~~~gk~~~~~~------g~dv~iva~G~~~~~a~~Aa~~---~-Gi~v~vi~~~~l~P~d~~~i------------- 261 (338)
T 1qs0_B 206 -YTVPLDKAAITRP------GNDVSVLTYGTTVYVAQVAAEE---S-GVDAEVIDLRSLWPLDLDTI------------- 261 (338)
T ss_dssp -CCCCTTCCCEEEC------CSSCEEEECTTHHHHHHHHHHH---H-CCCCEEEECSEEESCCHHHH-------------
T ss_pred -cccccCceeEecC------CCCEEEEEeCHHHHHHHHHHHH---c-CCCEEEEeecccCCCCHHHH-------------
Confidence 122233 456665 36999999999999999 9987 5 99999999999999988642
Q ss_pred chHHHHHHHhccCCCcEEEEecccc--hhHHHHHhhccC-C-----CcEEEEec-CcccccCChhhHHhhhcceeheecc
Q psy2375 784 QKVAYITKSLEKSIGPIIVATDYMR--LFAEQVRAFIPK-G-----RIYKVLGT-DGFGCSDTRKKLRDFFENIIHMKKI 854 (929)
Q Consensus 784 ~~~~~~~~~l~~~~~~vVtved~~~--~~~~~i~~~l~~-~-----~~~~~lG~-d~Fg~sgs~~~L~~~fgldae~Iv~ 854 (929)
.+.++++ +.+|++|++.. |+++.|++++.+ + .++.++|. |.|..++ |+++||++++.|++
T Consensus 262 ------~~~~~~~-~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~----l~~~~g~~~~~I~~ 330 (338)
T 1qs0_B 262 ------VESVKKT-GRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA----QEWAYFPGPSRVGA 330 (338)
T ss_dssp ------HHHHHHH-SCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST----THHHHSCCHHHHHH
T ss_pred ------HHHHhcC-CEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH----HHHHHCCCHHHHHH
Confidence 3444454 57999999853 788888777653 1 35788999 8887665 99999999999999
Q ss_pred ccccCc
Q psy2375 855 IKVPNI 860 (929)
Q Consensus 855 ~al~~L 860 (929)
+++..+
T Consensus 331 ~i~~~l 336 (338)
T 1qs0_B 331 ALKKVM 336 (338)
T ss_dssp HHHHSS
T ss_pred HHHHHh
Confidence 887665
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.93 E-value=2.5e-25 Score=251.16 Aligned_cols=250 Identities=15% Similarity=0.046 Sum_probs=189.7
Q ss_pred CCChhhHHH---HHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHH---HHHHHHHhhhcCCCCCCCCCcEEEeCCCch
Q psy2375 70 FPGNIKIEE---HLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLA---HILEIGFNHFWRAPTHSHGGDLIYIQGHSA 143 (929)
Q Consensus 70 ~~~~~~l~~---~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a---~l~~~l~~~~~~~p~~~~~dd~i~~~GH~a 143 (929)
.++.+++.+ ++ ..+|.....|+..++ +||+++++|++ .+...+ ...++. ++|.+| ..|..
T Consensus 32 ~l~~~~l~~l~~~m-~~~R~~~~~~~~~~~------~G~~g~~~~~~G~ea~~~~~-~~~l~~----~rD~i~--~s~r~ 97 (367)
T 1umd_A 32 DLEGEKLRRLYRDM-LAARMLDERYTILIR------TGKTSFIAPAAGHEAAQVAI-AHAIRP----GFDWVF--PYYRD 97 (367)
T ss_dssp CCCHHHHHHHHHHH-HHHHHHHHHHHHHHH------TTSCSCCCCCTTCHHHHHHH-HHHSCT----TTSEEE--CCTTT
T ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHhh------CCCccCCCCCcCHHHHHHHH-HHHcCC----CCcEEE--eCcHH
Confidence 356666655 44 468999999998776 57877665554 232222 223542 234444 37776
Q ss_pred HHHHHHHHHcCCCCHHHHhhhccc----cCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCC
Q psy2375 144 PGVYARAFLEGRLTEEQMINFRQE----VDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTI 219 (929)
Q Consensus 144 p~~Ya~~~l~Gr~~~~~l~~fR~~----~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~ 219 (929)
|+++++.|+..++.|..||+. ..|+++++||.... . .....+|++|.+++.|+|+|++.|+ ...
T Consensus 98 ---~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~-~~~~~~g~lG~~l~~a~G~A~a~k~-------~~~ 165 (367)
T 1umd_A 98 ---HGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKA-L-NFFTVASPIASHVPPAAGAAISMKL-------LRT 165 (367)
T ss_dssp ---HHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTT-T-TBCCCCSSTTTTHHHHHHHHHHHHH-------TTC
T ss_pred ---HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccc-c-CcCCCCchhhhhhhHHHHHHHHHHH-------hCC
Confidence 999999999878889999884 23556777764321 1 2355789999999999999988875 235
Q ss_pred CcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhh
Q psy2375 220 NRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDK 299 (929)
Q Consensus 220 ~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~ 299 (929)
+++|+|++|||++++|.++|||++|++++|+ +||||+||++++++|+... ....++..+++++||.++.|
T Consensus 166 ~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~-~~~~d~~~~a~a~G~~~~~V-------- 235 (367)
T 1umd_A 166 GQVAVCTFGDGATSEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQ-THSPTIADKAHAFGIPGYLV-------- 235 (367)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHH-CSSSCSGGGGGGTTSCEEEE--------
T ss_pred CCeEEEEEcccccccCcHHHHHHHHHHhCcC-EEEEEecCCeeeccChhhc-cCCCCHHHHHHHcCCcEEEe--------
Confidence 7899999999999999999999999999998 9999999999999887542 12356788999999999998
Q ss_pred hhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHh--
Q psy2375 300 LLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQK-- 377 (929)
Q Consensus 300 l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~-- 377 (929)
||||+.+|++|+++|++
T Consensus 236 -------------------------------------------------------------dg~d~~av~~a~~~A~~~a 254 (367)
T 1umd_A 236 -------------------------------------------------------------DGMDVLASYYVVKEAVERA 254 (367)
T ss_dssp -------------------------------------------------------------ETTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHHHHHH
Confidence 89999999999988876
Q ss_pred -CCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHhh
Q psy2375 378 -NKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDF 422 (929)
Q Consensus 378 -~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~ 422 (929)
..++|++|+++|.|++|++.+ ..+. .+.++++++.|+++
T Consensus 255 ~~~~gP~lIe~~t~r~~Ghs~~-D~~~-----~Yr~~~e~~~~~~~ 294 (367)
T 1umd_A 255 RRGEGPSLVELRVYRYGPHSSA-DDDS-----RYRPKEEVAFWRKK 294 (367)
T ss_dssp HTTCCCEEEEEECCCCSCSSTT-CCGG-----GTSCHHHHHHHHTT
T ss_pred HhcCCCEEEEEEeecCCCCCCC-CCcc-----ccCCHHHHHHHHcC
Confidence 237899999999999999863 2221 24478888888864
No 26
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.91 E-value=1.1e-23 Score=239.66 Aligned_cols=253 Identities=14% Similarity=0.100 Sum_probs=172.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 71 PGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 71 ~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
++.+++.+.++.+++...++.........+.++ +..++.|. +...++....++ .+|.|+. .|-.- +.+
T Consensus 52 ~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~-~~~~~~Gq-Ea~~vg~~~al~------~~D~v~~-~yR~~---~~~ 119 (400)
T 2bfd_A 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS-FYMTNYGE-EGTHVGSAAALD------NTDLVFG-QAREA---GVL 119 (400)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCCCCTTC-HHHHHHHHHTSC------TTSEEEC-CSCCH---HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-eeecCCCh-HHHHHHHHHhcC------CCCEEEe-cCcCH---HHH
Confidence 356788888888888888777533221122322 11223332 222233233443 3678887 45552 356
Q ss_pred HHcCCCCHHHHhhhccc----cCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEE
Q psy2375 151 FLEGRLTEEQMINFRQE----VDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWIL 226 (929)
Q Consensus 151 ~l~Gr~~~~~l~~fR~~----~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~ 226 (929)
+..|...++-|..|+.. +.|.++++|+.....+ ....+|+||.|++.|+|+|+|.++. +.+++|||+
T Consensus 120 ~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~--~~~~~g~lG~~lp~AvG~AlA~~~~-------~~~~~vv~~ 190 (400)
T 2bfd_A 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERH--FVTISSPLATQIPQAVGAAYAAKRA-------NANRVVICY 190 (400)
T ss_dssp HHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTT--BCCCCSSTTTHHHHHHHHHHHHHHH-------TCCCCEEEE
T ss_pred HHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccC--ccccCccccccccHHHHHHHhhhhh-------CCCCeEEEE
Confidence 66898777777888764 2355677776543322 4667899999999999999888863 357899999
Q ss_pred EcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCch
Q psy2375 227 CGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306 (929)
Q Consensus 227 ~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~ 306 (929)
+|||++++|.+||+|++|++++| |+||||++|++.+++++... ....++..+++++||+++.|
T Consensus 191 ~GDGa~~~G~~~Eal~~A~~~~l-pvi~vv~NN~~~i~~~~~~~-~~~~d~~~~a~a~G~~~~~V--------------- 253 (400)
T 2bfd_A 191 FGEGAASEGDAHAGFNFAATLEC-PIIFFCRNNGYAISTPTSEQ-YRGDGIAARGPGYGIMSIRV--------------- 253 (400)
T ss_dssp EETTGGGSHHHHHHHHHHHHTTC-CEEEEEEECSEETTEEGGGT-CSSSTTGGGTGGGTCEEEEE---------------
T ss_pred ECchhhhcChHHHHHHHHHHHCc-CEEEEEECCceeeeeccccc-CCCCCHHHHHHHcCCcEEEE---------------
Confidence 99999999999999999999999 69999999999999987653 23467889999999999998
Q ss_pred hHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCCe
Q psy2375 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKPT 383 (929)
Q Consensus 307 ~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P~ 383 (929)
||||+.+|++|+++|++. .++|+
T Consensus 254 ------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~~P~ 279 (400)
T 2bfd_A 254 ------------------------------------------------------DGNDVFAVYNATKEARRRAVAENQPF 279 (400)
T ss_dssp ------------------------------------------------------ETTCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 899999999999998862 37899
Q ss_pred EEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHh
Q psy2375 384 VLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 384 vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 421 (929)
+|+++|.+-.|+++ ..++. .+.++++++.|+.
T Consensus 280 lIe~~tyR~~gHs~-~D~~~-----~Yr~~~e~~~~~~ 311 (400)
T 2bfd_A 280 LIEAMTYRIGHAST-SDDSS-----AFRSVDEVNYWDK 311 (400)
T ss_dssp EEEEECCCCC--CC------------------------
T ss_pred EEEEEeeeeCCCCC-CCCCc-----cCCCHHHHHHHHh
Confidence 99999998888775 22221 1335566666654
No 27
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.89 E-value=5.9e-22 Score=223.20 Aligned_cols=250 Identities=16% Similarity=0.110 Sum_probs=175.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHH
Q psy2375 70 FPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYAR 149 (929)
Q Consensus 70 ~~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~ 149 (929)
.++.+++.+.++.+++...++.....-...+.+ |+..++.|. +...++....++ .+|.|+.. |-. +.+
T Consensus 40 ~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~-Ea~~vg~~~~l~------~~D~v~~~-~R~---~~~ 107 (368)
T 1w85_A 40 ELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQ-EASQIASHFALE------KEDFILPG-YRD---VPQ 107 (368)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTC-HHHHHHHHHTCC------TTCEEECC-SSC---HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCH-HHHHHHHHHhcC------CcCEEEec-chh---HHH
Confidence 357788888888777776665532211112334 444445544 323333344554 36788876 666 445
Q ss_pred HHHcCCCCHHHHhhhccccCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcC
Q psy2375 150 AFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGD 229 (929)
Q Consensus 150 ~~l~Gr~~~~~l~~fR~~~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GD 229 (929)
+...|.-..+-|..|..... |-+.|++ . .....+|+||.|++.|+|.|+|.++ .+.++.|+|++||
T Consensus 108 ~~~~G~~~~~~~~el~G~~~--G~~~h~~----~-~~~~~~g~lG~~lp~AvG~A~A~~~-------~~~~~~vv~i~GD 173 (368)
T 1w85_A 108 IIWHGLPLYQAFLFSRGHFH--GNQIPEG----V-NVLPPQIIIGAQYIQAAGVALGLKM-------RGKKAVAITYTGD 173 (368)
T ss_dssp HHHTTCCHHHHHHHHHTCGG--GGCCCTT----C-CBCCCCCSTTHHHHHHHHHHHHHHH-------TTCSCCEEEEEET
T ss_pred HHhcCCCHHHHHHHHCCCCC--CCCCCcc----c-ccCCCccccCccccHHHHHHHHhHh-------hCCCCeEEEEEch
Confidence 56677532333444443222 2122222 2 2456789999999999999988876 2467899999999
Q ss_pred CccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHH
Q psy2375 230 GEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGIL 309 (929)
Q Consensus 230 Ge~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l 309 (929)
|++++|.++|+||+|++++|+ +||||+||++.+++|+... ....++.++++++||.++.|
T Consensus 174 Ga~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~-~~~~d~~~~a~a~G~~~~~V------------------ 233 (368)
T 1w85_A 174 GGTSQGDFYEGINFAGAFKAP-AIFVVQNNRFAISTPVEKQ-TVAKTLAQKAVAAGIPGIQV------------------ 233 (368)
T ss_dssp GGGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGT-CSCSCSGGGGGGTTCCEEEE------------------
T ss_pred hhhhhcHHHHHHHHHHHHCcC-EEEEEEcCCccceeccccc-cCCCCHHHHHHHCCCCEEEE------------------
Confidence 999999999999999999995 9999999999999987652 22357889999999999998
Q ss_pred HHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHh---CCCCCeEEE
Q psy2375 310 KKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQK---NKDKPTVLL 386 (929)
Q Consensus 310 ~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~---~~~~P~vI~ 386 (929)
||||+.+|++|+++|++ ..++|+||.
T Consensus 234 ---------------------------------------------------dG~D~~av~~a~~~A~~~~r~~~gP~lIe 262 (368)
T 1w85_A 234 ---------------------------------------------------DGMDPLAVYAAVKAARERAINGEGPTLIE 262 (368)
T ss_dssp ---------------------------------------------------ETTCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred ---------------------------------------------------cCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 89999999999999986 247899999
Q ss_pred EeeecccCCc-cCCCCCcccccccCCCHHHHHHHHhh
Q psy2375 387 IKSIKGYGLG-RFGEARNTAHNIKKIDHQGIKSIRDF 422 (929)
Q Consensus 387 ~~T~KG~G~~-~~~e~~~~~H~~~~l~~~~~~~~r~~ 422 (929)
++|.+++||+ .+ .+... +.+.+|++.++++
T Consensus 263 ~~t~r~~gHs~~~---Ddp~~---yr~~~e~~~~~~~ 293 (368)
T 1w85_A 263 TLCFRYGPHTMSG---DDPTR---YRSKELENEWAKK 293 (368)
T ss_dssp EECCCSSCSCSSC---C---------CHHHHHHHHTT
T ss_pred EEeeccCCCCCCC---CCccc---cCCHHHHHHHhcC
Confidence 9999999997 52 22222 3477888988864
No 28
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.86 E-value=8.8e-21 Score=215.96 Aligned_cols=253 Identities=10% Similarity=0.045 Sum_probs=169.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 71 PGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 71 ~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
++.+++.+.++.+++...++.-.......+.++. ..++.|. |...++....++ .+|+|+. .|-.-+ ..
T Consensus 71 ~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~-~~~~~Gq-EA~~vg~~~al~------~~D~v~~-~yR~~~---~~ 138 (407)
T 1qs0_A 71 IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSF-YMQSLGE-EAIGSGQALALN------RTDMCFP-TYRQQS---IL 138 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CCCCTTT-HHHHHHHHHHSC------TTSEEEC-CSSCHH---HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-CcCCCCh-HHHHHHHHHhcC------CCCEEEe-cccchH---HH
Confidence 4677887878776666666553221111223331 1123332 222333333343 3678874 444421 22
Q ss_pred HHcCCCCHHHHhh-hccc----cCCCCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEE
Q psy2375 151 FLEGRLTEEQMIN-FRQE----VDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWI 225 (929)
Q Consensus 151 ~l~Gr~~~~~l~~-fR~~----~~~~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~ 225 (929)
+..| ++..++.. |... ..|.|.+.|-... ..+ ....+|+||.|++.|+|.|+|.++ .+.++.|+|
T Consensus 139 l~~g-~~~~~i~~el~g~~~~~~~G~g~~~h~~~~-~~~-~~~~~g~lG~~lp~AvGaA~A~k~-------~~~~~~vv~ 208 (407)
T 1qs0_A 139 MARD-VSLVEMICQLLSNERDPLKGRQLPIMYSVR-EAG-FFTISGNLATQFVQAVGWAMASAI-------KGDTKIASA 208 (407)
T ss_dssp HHTT-CCHHHHHHHHHTCTTCTTTTCSCTTCCCBG-GGT-BCCCCSSSSHHHHHHHHHHHHHHH-------TTCCCCEEE
T ss_pred HhcC-CCHHHHHHHHhCCCCCCCCCCCceeecchh-ccC-ccccccccccchhHHHHHHHHHHH-------hCCCCEEEE
Confidence 2244 56555432 3211 1233433322111 012 244589999999999999988876 245789999
Q ss_pred EEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCc
Q psy2375 226 LCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQ 305 (929)
Q Consensus 226 ~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~ 305 (929)
++|||++++|.+||+|++|+.++|+ +||||+||++.+++++........++.++++++||.++.|
T Consensus 209 i~GDGa~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~V-------------- 273 (407)
T 1qs0_A 209 WIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRV-------------- 273 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEE--------------
T ss_pred EECCchhhcChHHHHHHHHHHHCcC-EEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEE--------------
Confidence 9999999999999999999999999 9999999999999987632112457889999999999998
Q ss_pred hhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC---CCCC
Q psy2375 306 NGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN---KDKP 382 (929)
Q Consensus 306 ~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~---~~~P 382 (929)
||||+.+|++|+++|++. .++|
T Consensus 274 -------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~gP 298 (407)
T 1qs0_A 274 -------------------------------------------------------DGNDFVAVYAASRWAAERARRGLGP 298 (407)
T ss_dssp -------------------------------------------------------ETTCHHHHHHHHHHHHHHHHTTSCC
T ss_pred -------------------------------------------------------cCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999998763 4789
Q ss_pred eEEEEeeecccCCccCCCCCcccccccCCCHHHHHHHHh
Q psy2375 383 TVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 383 ~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 421 (929)
+||+++|.|++|++.+ ++. .. +.++++++.|++
T Consensus 299 ~lIe~~t~R~~Ghs~~-Dd~--~~---Yr~~~e~~~~~~ 331 (407)
T 1qs0_A 299 SLIEWVTYRAGPHSTS-DDP--SK---YRPADDWSHFPL 331 (407)
T ss_dssp EEEEEECCCCSCSSTT-CCG--GG---TSCTTHHHHCTT
T ss_pred EEEEEEeeccCCcCCC-CCc--cc---cCCHHHHHHHhc
Confidence 9999999999999863 322 22 336777877765
No 29
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.85 E-value=1.5e-20 Score=211.41 Aligned_cols=251 Identities=15% Similarity=0.089 Sum_probs=176.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHhhhcCCCCCCCCCcEEEeCCCchHHHHHHH
Q psy2375 71 PGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARA 150 (929)
Q Consensus 71 ~~~~~l~~~~~~~iR~~~~~~v~~a~~~~~~~gGH~~s~~s~a~l~~~l~~~~~~~p~~~~~dd~i~~~GH~ap~~Ya~~ 150 (929)
++.+++.+.++.+++...++.-...-...+.+.|+..++.|. +-..++....++ .+|.|+. +|.. +++.
T Consensus 31 l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~Gq-Ea~~vg~~~al~------~~D~i~~-~yR~---~~~~ 99 (365)
T 2ozl_A 31 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQ-EACCVGLEAGIN------PTDHLIT-AYRA---HGFT 99 (365)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTC-HHHHHHHHHTSC------TTSEEEC-CSCC---HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCh-HHHHHHHHHhhC------CCCEEeh-HHHH---HHHH
Confidence 467888888888777777766432221234566666666665 334444455564 2566666 4887 6778
Q ss_pred HHcCCCCHHH-HhhhccccCC--CCCCCCCCCCCCCCccccCcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEE
Q psy2375 151 FLEGRLTEEQ-MINFRQEVDG--YGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILC 227 (929)
Q Consensus 151 ~l~Gr~~~~~-l~~fR~~~~~--~gl~~~p~p~~~p~~~~f~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~ 227 (929)
+..|. +.++ |..|.....| .|.++..|.. .++ ....+|+||.|++.|+|.|+|.++. +.++.|+|++
T Consensus 100 ~~~G~-~~~~i~~e~~g~~~g~~~g~gg~~H~~-~~~-~~~~~g~~G~~lp~A~G~A~A~~~~-------~~~~~vv~~~ 169 (365)
T 2ozl_A 100 FTRGL-SVREILAELTGRKGGCAKGKGGSMHMY-AKN-FYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLY 169 (365)
T ss_dssp HHTTC-CHHHHHHHHTTCTTSTTTTSSCTTCCC-BTT-BCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEE
T ss_pred HhcCC-CHHHHHHHHcCCCCCCCCCCCCCCCcC-ccc-cCCCcchhhhhhHHHHHHHHHHHhc-------CCCceEEEEE
Confidence 88885 4455 3345432111 1222323421 132 2334589999999999999888862 3578999999
Q ss_pred cCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchh
Q psy2375 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNG 307 (929)
Q Consensus 228 GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~ 307 (929)
|||++++|.++|+||+|+.++|+ +||||+||++.++.++.... ...++.. +++||.++.|
T Consensus 170 GDGa~~~G~~~Ealn~A~~~~lp-vi~vv~NN~~g~~t~~~~~~-~~~~~~~--ra~g~p~~~V---------------- 229 (365)
T 2ozl_A 170 GDGAANQGQIFEAYNMAALWKLP-CIFICENNRYGMGTSVERAA-ASTDYYK--RGDFIPGLRV---------------- 229 (365)
T ss_dssp ETTGGGCHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEHHHHC-SCCCGGG--TTTTSCEEEE----------------
T ss_pred CchhhhccHHHHHHHHHHHHCcC-EEEEEECCCcccCCCccccc-CCCCHHH--HhCCCCEEEE----------------
Confidence 99999999999999999999997 99999999999988754321 1223333 6899999998
Q ss_pred HHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHh---CCCCCeE
Q psy2375 308 ILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQK---NKDKPTV 384 (929)
Q Consensus 308 ~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~---~~~~P~v 384 (929)
||||+++|++|+++|++ ..++|+|
T Consensus 230 -----------------------------------------------------dG~D~~av~~a~~~A~~~~r~~~gP~l 256 (365)
T 2ozl_A 230 -----------------------------------------------------DGMDILCVREATRFAAAYCRSGKGPIL 256 (365)
T ss_dssp -----------------------------------------------------ETTCHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 89999999999999875 2478999
Q ss_pred EEEeeecccCCccCCCCCcccccccCCCHHHHHHHHh
Q psy2375 385 LLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421 (929)
Q Consensus 385 I~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 421 (929)
|+++|.+.+||+.+ + ..+. +.++++++.+++
T Consensus 257 Ie~~t~R~~gHs~~--D-~~~~---Yr~~~e~~~~~~ 287 (365)
T 2ozl_A 257 MELQTYRYHGHEMS--D-PGVS---YRTREEIQEVRS 287 (365)
T ss_dssp EEEECCCSSCSSTT--C-CSCS---SSCHHHHHHHHH
T ss_pred EEEEeecCCCCCCC--C-CCcc---cCCHHHHHHHHh
Confidence 99999999999752 2 2121 347889998875
No 30
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.8e-13 Score=121.43 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=72.2
Q ss_pred eeccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcc-cCCCeEEEEee
Q psy2375 851 MKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI-SKDSQILILEE 927 (929)
Q Consensus 851 ~Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V-~~G~~L~~i~~ 927 (929)
...+..+|.+|. +.+|+|.+|++++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.| ..|++|+.|..
T Consensus 6 ~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~ 84 (98)
T 2dnc_A 6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 84 (98)
T ss_dssp CCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred ccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence 445677899984 899999999999999999999999999999999999999999999999999999 99999999874
No 31
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.36 E-value=8.5e-13 Score=120.01 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=72.0
Q ss_pred eccccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 852 KKIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 852 Iv~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
+.+..+|.+| ++.+|+|.+|++++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|..|++|+.|+.+
T Consensus 4 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred ceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4566789998 4899999999999999999999999999999999999999999999999999999999999999753
No 32
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.36 E-value=1.2e-12 Score=117.44 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=70.7
Q ss_pred ccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC-cccCCCeEEEEee
Q psy2375 853 KIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD-KISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~-~V~~G~~L~~i~~ 927 (929)
.+..+|.+|. +.+|+|.+|+++.||.|++||+|++||+|||.++|+||.+|+|.++++++|+ .|..|++|+.|+.
T Consensus 6 ~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 6 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred eEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 4567888984 8999999999999999999999999999999999999999999999999999 8999999999975
No 33
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.36 E-value=5.6e-13 Score=151.69 Aligned_cols=230 Identities=12% Similarity=0.077 Sum_probs=70.0
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ 640 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t 640 (929)
...+++++. +|++++++ +.|+|..| .+|++.+.+++ +.++.|++..++....|.|++++..++...+-...+
T Consensus 63 ~g~~~i~~e-~E~~a~~~----a~Gaa~aG--~r~~~~ts~~G-~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~ 134 (395)
T 1yd7_A 63 VDGVVIQME-DEIASIAA----AIGASWAG--AKAMTATSGPG-FSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLP 134 (395)
T ss_dssp GTCEEEECS-CHHHHHHH----HHHHHHTT--CCEEEEEETTH-HHHHTTTCC----CCCCEEEEEEC------------
T ss_pred cCcEEEEeC-CHHHHHHH----HHHHHHhC--CcEEEEeCchH-HHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCccc
Confidence 457899887 99997776 44577788 88999887776 678999886666667776766555443322212223
Q ss_pred CCChhhHHHHhcCC--CcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC----CCCCCCCCC-------------
Q psy2375 641 HEDGHSHVLASTIP--NCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM----NENYSHPGL------------- 701 (929)
Q Consensus 641 Hq~~ed~~l~r~iP--nl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~----~e~~~~p~~------------- 701 (929)
||+-.-.+++...| ++.++.|++++|+..++..|++.....+.||.+.++.. .++...|..
T Consensus 135 ~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~ 214 (395)
T 1yd7_A 135 AQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRN 214 (395)
T ss_dssp --------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC----
T ss_pred chhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCC
Confidence 33222122445655 99999999999999999999841110112466665421 111111110
Q ss_pred Ccc-c-cccc--ccc--------eE---------------E------------------E----eccC--C--cCCCCcE
Q psy2375 702 KKG-Q-EKGI--IKG--------LY---------------L------------------L----KNHN--N--EKSKLKV 728 (929)
Q Consensus 702 ~~~-~-~~~i--~~G--------~y---------------~------------------l----~~g~--~--~~~g~dv 728 (929)
+.. . ...+ ..| .+ . + ++.. . ..++.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv 294 (395)
T 1yd7_A 215 EEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEI 294 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccCcccCCCCCCCCCccCCCCceeEecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCE
Confidence 000 0 0000 000 00 0 0 0000 0 0235699
Q ss_pred EEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEeccc
Q psy2375 729 QLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYM 807 (929)
Q Consensus 729 ~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~ 807 (929)
+||++|+++..++ |++.|+++ ||+++|+++++++|||.+.+ .+.++++ +.||++|++.
T Consensus 295 ~iva~G~~~~~~~eA~~~L~~~-Gi~v~vi~~r~~~Pld~~~i-------------------~~~~~~~-~~vvvvEe~~ 353 (395)
T 1yd7_A 295 GVVATGIVARSALRAVKMLREE-GIKAGLLKIETIWPFDFELI-------------------ERIAERV-DKLYVPEMNL 353 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECccHHHHHHHHHHHHHc-CCceEEEEeCeecCCCHHHH-------------------HHHHhcC-CEEEEEeCCc
Confidence 9999999999999 99999998 99999999999999998653 3455565 6899999997
Q ss_pred chhHHHHHhhcc
Q psy2375 808 RLFAEQVRAFIP 819 (929)
Q Consensus 808 ~~~~~~i~~~l~ 819 (929)
.++++.|+..+.
T Consensus 354 G~l~~~v~~~~~ 365 (395)
T 1yd7_A 354 GQLYHLIKEGAN 365 (395)
T ss_dssp ------------
T ss_pred hHHHHHHHHHhc
Confidence 667777877665
No 34
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.34 E-value=1.6e-12 Score=124.64 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=71.6
Q ss_pred eccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC-cccCCCeEEEEee
Q psy2375 852 KKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD-KISKDSQILILEE 927 (929)
Q Consensus 852 Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~-~V~~G~~L~~i~~ 927 (929)
+.+..+|.+|. +.+|+|.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|..|++|+.|+.
T Consensus 27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 45677899984 9999999999999999999999999999999999999999999999999998 8999999999975
No 35
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=122.01 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=71.3
Q ss_pred eccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC-cccCCCeEEEEee
Q psy2375 852 KKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD-KISKDSQILILEE 927 (929)
Q Consensus 852 Iv~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~-~V~~G~~L~~i~~ 927 (929)
..+..+|.+|. +.+|+|.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|..|++|+.|+.
T Consensus 7 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 7 GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 45567899984 9999999999999999999999999999999999999999999999999999 8999999999974
No 36
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.30 E-value=3.9e-12 Score=111.76 Aligned_cols=74 Identities=30% Similarity=0.429 Sum_probs=69.6
Q ss_pred cccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+| ++.+|+|.+|+++.||.|++||+|+++|+||+..+|+||.+|+|.++.+++|+.|..|++|+.|+.
T Consensus 3 ~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred EEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 35678887 488999999999999999999999999999999999999999999999999999999999999875
No 37
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.23 E-value=1e-11 Score=108.46 Aligned_cols=74 Identities=32% Similarity=0.514 Sum_probs=69.3
Q ss_pred cccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+| +..+|+|.+|+++.||.|++||+|+.+|+||+..+|+||.+|+|.++.+++|+.|..|++|+.|++
T Consensus 3 ~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred EEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 45678887 488999999999999999999999999999999999999999999999999999999999999863
No 38
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.20 E-value=1.7e-11 Score=107.81 Aligned_cols=73 Identities=52% Similarity=0.836 Sum_probs=68.6
Q ss_pred cccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+|.- +|+|.+|+++.||.|++||+|++||+||+..+|+||.+|+|.++.+++|+.|..|++|+.|+.
T Consensus 4 ~i~~p~~g~~-~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 4 EVNVPDIGGD-EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp EECCCCCSSS-CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred EEECCCCCCC-CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 4567888754 999999999999999999999999999999999999999999999999999999999999975
No 39
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.19 E-value=1.5e-12 Score=114.79 Aligned_cols=74 Identities=27% Similarity=0.458 Sum_probs=69.7
Q ss_pred cccccCcC-CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 854 IIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 854 ~~al~~LG-~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+..+|.+| ++.+|+|.+|++++||.|++||+|++||+||+..+|+||.+|+|.++++++|+.|..|++|+.|++
T Consensus 4 ~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45678887 489999999999999999999999999999999999999999999999999999999999998865
No 40
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.19 E-value=2.9e-11 Score=144.89 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=106.3
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcc------
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRL------ 263 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~i------ 263 (929)
.++||.|++.|+|.| ++.+ +++|+|++|||++..+ +++|+.|++++|+.++||+|||.+.+
T Consensus 419 ~g~~G~~l~~A~Gaa-----la~~------~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~ 485 (603)
T 4feg_A 419 FATMGVGIPGAIAAK-----LNYP------ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQE 485 (603)
T ss_dssp SCCTTCHHHHHHHHH-----HHCT------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHH
T ss_pred cccccchhHHHhhHH-----HhCC------CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHH
Confidence 589999999999999 5432 5789999999999865 88899999999998888888888876
Q ss_pred ---cc-cccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 264 ---DG-PVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 264 ---dg-~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
.. +. +......++.++++++||..+.|
T Consensus 486 ~~~~~~~~-~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------ 516 (603)
T 4feg_A 486 DTNQNDFI-GVEFNDIDFSKIADGVHMQAFRV------------------------------------------------ 516 (603)
T ss_dssp HHCSSCCC-SSBCCCCCHHHHHHHTTCEEEEE------------------------------------------------
T ss_pred HhcCCCcc-cCcCCCCCHHHHHHHCCCeEEEE------------------------------------------------
Confidence 22 11 11112346899999999999988
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHH--hCCCCCeEEEEeeecccCCccCCCCCcccccccCCCHHHHH
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQ--KNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIK 417 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~--~~~~~P~vI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~ 417 (929)
+ +++++.+|+++|+ +. ++|++|+++|.++|.++. .......|.. ...+.+
T Consensus 517 ---------------------~--~~~~l~~al~~a~~~~~-~gP~lIev~~~~~~~~~~-~~~~~~~~~~---~~~~~~ 568 (603)
T 4feg_A 517 ---------------------N--KIEQLPDVFEQAKAIAQ-HEPVLIDAVITGDRPLPA-EKLRLDSAMS---SAADIE 568 (603)
T ss_dssp ---------------------C--BGGGHHHHHHHHHHHTT-TSCEEEEEECCCCCCCCT-TSCCCCTTTS---CHHHHH
T ss_pred ---------------------C--CHHHHHHHHHHHHHhcC-CCcEEEEEEeCCCCCCCc-ccchhhhhhh---hHHHHH
Confidence 2 5567888999888 54 789999999988888876 3333444543 334444
Q ss_pred HHHhh
Q psy2375 418 SIRDF 422 (929)
Q Consensus 418 ~~r~~ 422 (929)
.++.+
T Consensus 569 ~~~~~ 573 (603)
T 4feg_A 569 AFKQR 573 (603)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44443
No 41
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.17 E-value=4.1e-11 Score=105.19 Aligned_cols=72 Identities=47% Similarity=0.774 Sum_probs=66.8
Q ss_pred ccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 855 ~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
..+|.+|.- + +|.+|+++.||.|++||+|++||+||+..+|+||.+|+|.++.+++|+.|..|++|+.|...
T Consensus 4 i~~P~~g~~-~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 4 IRVPDIGGD-G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EECCCCSSE-E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EECCCCCCC-C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 457888763 7 99999999999999999999999999999999999999999999999999999999998753
No 42
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.16 E-value=1.1e-11 Score=109.46 Aligned_cols=75 Identities=44% Similarity=0.791 Sum_probs=70.5
Q ss_pred ccccccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+..+|.+|....|.|.+|+++.||.|++||+|++||+||+..+|+||.+|+|.++.+++|+.|..|++|+.|..
T Consensus 3 ~~i~~p~~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 3 VELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EECCCCCCSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEcCCCCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 355688888888999999999999999999999999999999999999999999999999999999999999864
No 43
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.09 E-value=9.8e-12 Score=142.46 Aligned_cols=75 Identities=33% Similarity=0.490 Sum_probs=0.0
Q ss_pred ccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 853 KIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 853 v~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+..+|.||+ +++|+|++|+|++||.|++||+||+||||||+++|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~ 78 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 78 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3567899985 99999999999999999999999999999999999999999999999999999999999999974
No 44
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.08 E-value=1.1e-11 Score=130.35 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccccccCcCC-ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCc-ccCCCeEEEEe
Q psy2375 853 KIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK-ISKDSQILILE 926 (929)
Q Consensus 853 v~~al~~LG~-i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~-V~~G~~L~~i~ 926 (929)
.+..+|.||+ |.+|+|.+|++++||.|++||+||+||+||++++|.||.+|+|.++++++|+. |.+|++|++|+
T Consensus 4 ~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 4 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred eeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 4677899985 99999999999999999999999999999999999999999999999999997 99999999986
No 45
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=103.48 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=61.2
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-.+|+|.+|+++.||.|++||+|++||+||+..+|+||.+|+|.++. ++|+.|..|++|+.|+.
T Consensus 11 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 11 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp SSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 45789999999999999999999999999999999999999999999 99999999999999975
No 46
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.05 E-value=2.7e-10 Score=136.21 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=98.5
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|.| ++. .+++|+|++|||++..+ +++|+.|++++|+.+++|+|||.+.+.+...
T Consensus 411 ~~g~mG~~l~~AiGaa-----la~------~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q 477 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAK-----NTY------PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKY 477 (590)
T ss_dssp SSCCTTCHHHHHHHHH-----HHC------TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTT
T ss_pred CCCcccChHHHHHHHH-----HhC------CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHH
Confidence 4799999999999999 543 25789999999999865 7999999999999999999999998876432
Q ss_pred ccc--------cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 269 GNS--------KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 269 ~~~--------~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
... ....++.+.++++||..++|
T Consensus 478 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------- 508 (590)
T 1v5e_A 478 EDTNKNLFGVDFTDVDYAKIAEAQGAKGFTV------------------------------------------------- 508 (590)
T ss_dssp SSSCCSCCCCCCCCCCHHHHHHHTTSEEEEE-------------------------------------------------
T ss_pred HHhcCCCccccCCCCCHHHHHHHcCCEEEEE-------------------------------------------------
Confidence 110 01246889999999999987
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhC--CCCCeEEEEeeeccc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKN--KDKPTVLLIKSIKGY 393 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~--~~~P~vI~~~T~KG~ 393 (929)
++++++.+++++|.+. +++|++|+++|.++-
T Consensus 509 ----------------------~~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 509 ----------------------SRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp ----------------------CBHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 2678899999988764 268999999999875
No 47
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.05 E-value=3.6e-10 Score=97.03 Aligned_cols=64 Identities=31% Similarity=0.462 Sum_probs=61.4
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+|.|.+|+++.||.|++||+|+.||++|+..+|+||.+|+|.++.+++|+.|..|++|+.|.+
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 4688999999999999999999999999999999999999999999999999999999999864
No 48
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.04 E-value=3.6e-10 Score=134.24 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=97.4
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
.+|+||.|++.|+|.|.+.| +.+++|+|++|||++..+ +++|+.|++++|+.+++|+|||.+.+.+...
T Consensus 417 g~g~~G~~l~~AiGaa~a~~---------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~ 485 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL---------EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQ 485 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH---------HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHH
T ss_pred CCccccChHHHHHHHHHHhh---------CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHH
Confidence 46999999999999995543 135789999999999864 7899999999999999999999988765421
Q ss_pred ----------ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 269 ----------GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 269 ----------~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
++.....++...++++||..++|
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----------------------------------------------- 518 (563)
T 2uz1_A 486 QLAVGPNRVTGTRLENGSYHGVAAAFGADGYHV----------------------------------------------- 518 (563)
T ss_dssp HHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEE-----------------------------------------------
T ss_pred HHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEe-----------------------------------------------
Confidence 11001246888999999998887
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++++++.+++++|.+. ++|++|+++|.+
T Consensus 519 ------------------------~~~~~l~~al~~a~~~-~gp~liev~~~~ 546 (563)
T 2uz1_A 519 ------------------------DSVESFSAALAQALAH-NRPACINVAVAL 546 (563)
T ss_dssp ------------------------CSHHHHHHHHHHHHHS-SSCEEEEEECCS
T ss_pred ------------------------CCHHHHHHHHHHHHHC-CCCEEEEEEecc
Confidence 3689999999999875 789999999973
No 49
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.03 E-value=2.7e-10 Score=136.05 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=98.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccc--
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPV-- 267 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v-- 267 (929)
.|+||.|++.|+|+| ++. .+++|+|++|||++.. .+++|+.|++++|+.+++|+|||.+.+.+..
T Consensus 425 ~G~~G~~l~~AiGaa-----la~------~~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~ 491 (590)
T 1ybh_A 425 LGAMGFGLPAAIGAS-----VAN------PDAIVVDIDGDGSFIM--NVQELATIRVENLPVKVLLLNNQHLGMVMQWED 491 (590)
T ss_dssp SCCTTCHHHHHHHHH-----HHC------TTSCEEEEEEHHHHHH--TTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHH
T ss_pred cccccchHHHHHHHH-----HhC------CCCcEEEEEccchhhc--cHHHHHHHHHhCCCcEEEEEECCcchHHHHHHH
Confidence 489999999999999 543 2578999999999985 5889999999999989999999998775321
Q ss_pred -------ccc--cc------chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhh
Q psy2375 268 -------RGN--SK------IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFI 332 (929)
Q Consensus 268 -------~~~--~~------~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~ 332 (929)
... +. ...++.+.++++||..++|
T Consensus 492 ~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v----------------------------------------- 530 (590)
T 1ybh_A 492 RFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARV----------------------------------------- 530 (590)
T ss_dssp HHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEE-----------------------------------------
T ss_pred HhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEe-----------------------------------------
Confidence 010 00 0136888999999998887
Q ss_pred HhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCc
Q psy2375 333 RKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLG 396 (929)
Q Consensus 333 r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~ 396 (929)
++++++.+++++|.+. ++|++|+++|.++....
T Consensus 531 ------------------------------~~~~el~~al~~a~~~-~gp~liev~~~~~~~~~ 563 (590)
T 1ybh_A 531 ------------------------------TKKADLREAIQTMLDT-PGPYLLDVICPHQEHVL 563 (590)
T ss_dssp ------------------------------CBHHHHHHHHHHHHHS-SSCEEEEEECCTTCCCC
T ss_pred ------------------------------CCHHHHHHHHHHHHhC-CCCEEEEEEecCCcccC
Confidence 3788999999999886 78999999999987653
No 50
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.01 E-value=1e-09 Score=133.09 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=98.2
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccc--
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPV-- 267 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v-- 267 (929)
.|+||.|++.|+|.| ++. .+++|+|++|||++.. .+++|+.|++++|+.+|||+|||.+.+....
T Consensus 512 ~G~mG~~lpaAiGaa-----lA~------p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~ 578 (677)
T 1t9b_A 512 LGTMGYGLPAAIGAQ-----VAK------PESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMVTQWQS 578 (677)
T ss_dssp SCCTTCHHHHHHHHH-----HHC------TTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHH
T ss_pred cchhhchHHHHHHHH-----HhC------CCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhh
Confidence 479999999999999 542 3679999999999975 6788999999999999999999988764321
Q ss_pred -------cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 268 -------RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 268 -------~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
.+......++...++++||..++|
T Consensus 579 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v------------------------------------------------- 609 (677)
T 1t9b_A 579 LFYEHRYSHTHQLNPDFIKLAEAMGLKGLRV------------------------------------------------- 609 (677)
T ss_dssp HHSTTCCCSCCCCCCCHHHHHHHTTCEEEEE-------------------------------------------------
T ss_pred hhcCCCcccCcCCCCCHHHHHHHcCCeEEEE-------------------------------------------------
Confidence 110001236888999999999887
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLG 396 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~ 396 (929)
++++++.+|+++|.+. ++|++|+++|.++....
T Consensus 610 ----------------------~~~~el~~al~~a~~~-~gp~lIev~~~~~~~~~ 642 (677)
T 1t9b_A 610 ----------------------KKQEELDAKLKEFVST-KGPVLLEVEVDKKVPVL 642 (677)
T ss_dssp ----------------------CSHHHHHHHHHHHHHC-SSCEEEEEEBCSSCCCS
T ss_pred ----------------------CCHHHHHHHHHHHHHC-CCcEEEEEEecCCcccC
Confidence 3688999999999875 78999999999987643
No 51
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.01 E-value=2.5e-10 Score=135.91 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=96.3
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|+| ++. .+++|+|++|||++.. .+++|+.|++++|+.+++|+|||.+.+.+...
T Consensus 434 g~g~mG~~l~~AiGaa-----~a~------~~~~vv~i~GDG~~~~--~~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~ 500 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQ-----MAR------PDQPTFLIAGDGGFHS--NSSDLETIARLNLPIVTVVVNNDTNGLIELYQ 500 (573)
T ss_dssp SSCCTTCHHHHHHHHH-----HHS------TTSCEEEEEEHHHHHH--TGGGHHHHHHHTCCCEEEEEECSBCHHHHHHH
T ss_pred CCcccccHHHHHHHHH-----HhC------CCCcEEEEEccHHHHh--HHHHHHHHHHhCCCeEEEEEECCcchhhHHHH
Confidence 3599999999999999 543 2578999999999985 58899999999999999999999998866421
Q ss_pred --------c--cccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 269 --------G--NSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 269 --------~--~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
+ ......++.+.++++||+.++|
T Consensus 501 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----------------------------------------------- 533 (573)
T 2iht_A 501 NIGHHRSHDPAVKFGGVDFVALAEANGVDATRA----------------------------------------------- 533 (573)
T ss_dssp HHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEEC-----------------------------------------------
T ss_pred HHhcCCCcCccccCCCCCHHHHHHHcCCeEEEe-----------------------------------------------
Confidence 0 0001136888999999998876
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++.+++.+++++|.+. ++|++|+++|.+
T Consensus 534 ------------------------~~~~~l~~al~~a~~~-~gp~liev~~~~ 561 (573)
T 2iht_A 534 ------------------------TNREELLAALRKGAEL-GRPFLIEVPVNY 561 (573)
T ss_dssp ------------------------CSHHHHHHHHHHHHTS-SSCEEEEEEBCC
T ss_pred ------------------------CCHHHHHHHHHHHHhC-CCCEEEEEECCC
Confidence 3678899999999875 789999999998
No 52
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.01 E-value=2.9e-10 Score=136.49 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=94.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc---
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP--- 266 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~--- 266 (929)
.|+||.|++.|+|+| ++. .+++|+|++|||++.. .+++|+.|++++|+.+++|+|||.+.+...
T Consensus 441 ~G~~G~~l~~AiGaa-----la~------~~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~ 507 (616)
T 2pan_A 441 AGPLGWTIPAALGVC-----AAD------PKRNVVAISGDFDFQF--LIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQR 507 (616)
T ss_dssp TCCTTCHHHHHHHHH-----HHC------TTCEEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGG
T ss_pred cccccchHHHHHHHH-----HhC------CCCcEEEEEcchhhhC--CHHHHHHHHHhCCCeEEEEEECCcchHHHHHHH
Confidence 599999999999999 542 2578999999999985 588999999999998999999998876422
Q ss_pred -----------ccccccc-----hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCch
Q psy2375 267 -----------VRGNSKI-----IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSD 330 (929)
Q Consensus 267 -----------v~~~~~~-----~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~ 330 (929)
....... .-++...++++||..++|
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v--------------------------------------- 548 (616)
T 2pan_A 508 AFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--------------------------------------- 548 (616)
T ss_dssp GGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEE---------------------------------------
T ss_pred HhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEE---------------------------------------
Confidence 1110000 136889999999999887
Q ss_pred hhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHh----CCCCCeEEEEeeeccc
Q psy2375 331 FIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQK----NKDKPTVLLIKSIKGY 393 (929)
Q Consensus 331 ~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~----~~~~P~vI~~~T~KG~ 393 (929)
++++++.+++++|.+ . ++|+||+++|.|+.
T Consensus 549 --------------------------------~~~~el~~al~~a~~~~~~~-~gp~lIev~~~~~~ 582 (616)
T 2pan_A 549 --------------------------------FKPEDIAPAFEQAKALMAQY-RVPVVVEVILERVT 582 (616)
T ss_dssp --------------------------------CSGGGHHHHHHHHHHHHHHH-CSCEEEEEEBCSCC
T ss_pred --------------------------------CCHHHHHHHHHHHHhhcccC-CCcEEEEEEecccc
Confidence 256678888888876 4 78999999999887
No 53
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.01 E-value=4.5e-10 Score=98.74 Aligned_cols=60 Identities=22% Similarity=0.496 Sum_probs=56.8
Q ss_pred ceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 867 EVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 867 ~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
.+.+|+++.||.|++||+|+.||+||+..+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 21 ~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 21 PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 445679999999999999999999999999999999999999999999999999999884
No 54
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.00 E-value=1.5e-10 Score=137.64 Aligned_cols=123 Identities=14% Similarity=0.113 Sum_probs=97.2
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|.|.+.+. ++.+++|+|++|||++.. .+++|+.|++++|+.+++|+|||.+.+.....
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~-------~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~ 481 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEE-------IDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLIH 481 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHH-------HCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHS
T ss_pred chhhhhhHHHHHHHHHHhCcc-------cCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhhh
Confidence 469999999999999966542 245688999999999975 58999999999999999999999988743221
Q ss_pred c-----cccchHHHHHHHhhCCce---EEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 269 G-----NSKIIQELEAHFYGVGWN---VIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 269 ~-----~~~~~~~l~~~f~~~Gw~---vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+ +.....++.++++++||. .++|
T Consensus 482 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v------------------------------------------------- 512 (563)
T 2vk8_A 482 GPKAQYNEIQGWDHLSLLPTFGAKDYETHRV------------------------------------------------- 512 (563)
T ss_dssp CTTCGGGCCCCCCGGGHHHHTTCSSEEEEEE-------------------------------------------------
T ss_pred CCCCCcccCCCCCHHHHHHHhCCCCCcEEEe-------------------------------------------------
Confidence 1 000113677889999998 8887
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHH-HHHhCCCCCeEEEEeeec
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFK-MAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~-~a~~~~~~P~vI~~~T~K 391 (929)
+ +++++.++++ +|.+..++|++|+++|.+
T Consensus 513 --------------------~--~~~el~~al~~~a~~~~~~p~liev~~~~ 542 (563)
T 2vk8_A 513 --------------------A--TTGEWDKLTQDKSFNDNSKIRMIEVMLPV 542 (563)
T ss_dssp --------------------C--BHHHHHHHHTCTTTTSCSSEEEEEEECCT
T ss_pred --------------------c--CHHHHHHHHHHHHHhCCCCcEEEEEEeCc
Confidence 2 6788999999 787655679999999985
No 55
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.00 E-value=4.3e-10 Score=132.56 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=94.2
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc--
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR-- 268 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~-- 268 (929)
|+||.|++.|+|.| ++.+ +++|+|++|||++..+ +++|+.|++++|+.+++|+|||.+.+.+...
T Consensus 401 g~~G~~l~~A~G~a-----~a~~------~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~ 467 (528)
T 1q6z_A 401 GGLGFALPAAIGVQ-----LAEP------ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGV 467 (528)
T ss_dssp CCTTSHHHHHHHHH-----HHCT------TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHH
T ss_pred ccccchHHHHHHHH-----HhCC------CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHH
Confidence 99999999999999 5432 4689999999999865 9999999999999899999999888754321
Q ss_pred -------ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 269 -------GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 269 -------~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
++.....++.+.++++||..++|
T Consensus 468 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-------------------------------------------------- 497 (528)
T 1q6z_A 468 LEAENVPGLDVPGIDFRALAKGYGVQALKA-------------------------------------------------- 497 (528)
T ss_dssp HTCCSCCSCBCCCCCHHHHHHHHTCEEEEE--------------------------------------------------
T ss_pred hcCCCcccCCCCCCCHHHHHHHcCCeEEEe--------------------------------------------------
Confidence 11001236888999999999887
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
+ +.+++.+++++|.+. ++|++|+++|.+.
T Consensus 498 -------------------~--~~~~l~~al~~a~~~-~gp~liev~~~~~ 526 (528)
T 1q6z_A 498 -------------------D--NLEQLKGSLQEALSA-KGPVLIEVSTVSP 526 (528)
T ss_dssp -------------------S--SHHHHHHHHHHHHTC-SSCEEEEEEBCC-
T ss_pred -------------------C--CHHHHHHHHHHHHHC-CCcEEEEEEecCC
Confidence 3 457899999999875 7899999999753
No 56
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.99 E-value=2.7e-10 Score=135.37 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=97.4
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|.| ++. .+++|+|++|||++.. .+++|+.|++++++.++||+|||.+.+.+...
T Consensus 407 ~~g~mG~~l~~A~G~a-----la~------~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~ 473 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNA-----MGS------QDRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIH 473 (566)
T ss_dssp TTCCTTTHHHHHHHHH-----HTC------TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred cccchhhHHHHHHHHH-----HhC------CCCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeec
Confidence 4689999999999999 542 3579999999999985 58889999999999999999999998876543
Q ss_pred c---cccchHHHHHHHhhCCc-----eEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 269 G---NSKIIQELEAHFYGVGW-----NVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 269 ~---~~~~~~~l~~~f~~~Gw-----~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
. +.....++.+.++++|| ..++|
T Consensus 474 ~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v------------------------------------------------- 504 (566)
T 2vbi_A 474 DGPYNYIKNWDYAGLMEVFNAGEGHGLGLKA------------------------------------------------- 504 (566)
T ss_dssp CCGGGCCCCCCTTTHHHHHHTTTCCCEEEEE-------------------------------------------------
T ss_pred cCCccCCCCCCHHHHHHHcCCCCCCccEEEe-------------------------------------------------
Confidence 1 00011356778888898 88777
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
++++++.+++++|.+..++|++|+++|.+..
T Consensus 505 ----------------------~~~~el~~al~~a~~~~~gp~liev~~~~~~ 535 (566)
T 2vbi_A 505 ----------------------TTPKELTEAIARAKANTRGPTLIECQIDRTD 535 (566)
T ss_dssp ----------------------CSHHHHHHHHHHHHHCCSSCEEEEEECCTTC
T ss_pred ----------------------CCHHHHHHHHHHHHhcCCCcEEEEEEeCccc
Confidence 3688999999999875478999999998753
No 57
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=7.8e-10 Score=101.65 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=61.2
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-.+|+|.+|+++.||.|++||+|++||+||+..+|+||.+|+|. +.+++|+.|..|++|+.|..
T Consensus 23 ~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 23 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp SSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999 99999999999999999864
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.96 E-value=4.1e-10 Score=133.91 Aligned_cols=120 Identities=23% Similarity=0.134 Sum_probs=96.0
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|.| ++. .+++|+|++|||++.. .+++|+.|++++|+.+++|+|||.+.+.+...
T Consensus 418 g~g~mG~~l~~AiGaa-----la~------~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~ 484 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAW-----LVN------PERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNMVAIQE 484 (566)
T ss_dssp TTCCTTCHHHHHHHHH-----HHS------TTSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHHHHHHH
T ss_pred CcccccchHHHHHHHH-----HhC------CCCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhHHHHHH
Confidence 4689999999999999 543 2579999999999986 57889999999999999999999998765321
Q ss_pred --------ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 269 --------GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 269 --------~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
+......++.+.++++||..++|
T Consensus 485 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------- 515 (566)
T 1ozh_A 485 EKKYQRLSGVEFGPMDFKAYAESFGAKGFAV------------------------------------------------- 515 (566)
T ss_dssp HHHHSSCCSCBCCCCCHHHHHHTTTSEEEEC-------------------------------------------------
T ss_pred HHhcCCCccCcCCCCCHHHHHHHcCCeEEEe-------------------------------------------------
Confidence 00011246888999999998886
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
+ +++++.+++++|.+. ++|++|+++|.+..
T Consensus 516 --------------------~--~~~el~~al~~a~~~-~gp~liev~~~~~~ 545 (566)
T 1ozh_A 516 --------------------E--SAEALEPTLRAAMDV-DGPAVVAIPVDYRD 545 (566)
T ss_dssp --------------------C--SGGGHHHHHHHHHHS-SSCEEEEEEBCCTT
T ss_pred --------------------C--CHHHHHHHHHHHHhC-CCCEEEEEEeCCCc
Confidence 2 567788999998875 78999999998764
No 59
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.95 E-value=7.7e-10 Score=131.57 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=96.7
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|+| ++. .+++|+|++|||++.. .+++|..|++++++.+++|+|||.+.+.+...
T Consensus 411 ~~g~~G~~l~~A~G~a-----la~------~~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~ 477 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYA-----VGA------PERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIH 477 (568)
T ss_dssp TTCCTTTHHHHHHHHH-----HHC------TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred CcchhhhHHHHHHHHH-----HhC------CCCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeec
Confidence 4689999999999999 543 2579999999999985 68889999999999999999999998865542
Q ss_pred c---cccchHHHHHHHhhCCc---------eEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhc
Q psy2375 269 G---NSKIIQELEAHFYGVGW---------NVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNF 336 (929)
Q Consensus 269 ~---~~~~~~~l~~~f~~~Gw---------~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~ 336 (929)
. +.....++.+.++++|| ..++|
T Consensus 478 ~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v--------------------------------------------- 512 (568)
T 2wvg_A 478 DGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKA--------------------------------------------- 512 (568)
T ss_dssp CCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---------------------------------------------
T ss_pred cCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEe---------------------------------------------
Confidence 1 00011367888889998 77776
Q ss_pred cCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 337 FGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 337 fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
++.+++.+++++|.+..++|++|+++|.+.
T Consensus 513 --------------------------~~~~el~~al~~a~~~~~gp~liev~~~~~ 542 (568)
T 2wvg_A 513 --------------------------KTGGELAEAIKVALANTDGPTLIECFIGRE 542 (568)
T ss_dssp --------------------------SBHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred --------------------------CCHHHHHHHHHHHHhcCCCcEEEEEEcCcc
Confidence 378899999999987547899999999875
No 60
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.95 E-value=4.5e-10 Score=133.04 Aligned_cols=118 Identities=16% Similarity=0.254 Sum_probs=94.7
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|+| ++.+ +++|+|++|||++. +.+++|..|++++|+.+++|+|||.+.+.....
T Consensus 406 ~~g~mG~~l~~A~G~a-----~a~~------~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~ 472 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQ-----TACP------NRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIH 472 (552)
T ss_dssp TTCCTTHHHHHHHHHH-----HHCT------TSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHS
T ss_pred hhHhhhhHHHHHHHHH-----HhCC------CCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEeec
Confidence 4699999999999999 5432 57899999999997 568899999999999999999999998763221
Q ss_pred c-----cccchHHHHHHHhhCCc----eEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 269 G-----NSKIIQELEAHFYGVGW----NVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 269 ~-----~~~~~~~l~~~f~~~Gw----~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
+ +.....++.+.++++|| ..++|
T Consensus 473 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v------------------------------------------------ 504 (552)
T 1ovm_A 473 GAEQRYNDIALWNWTHIPQALSLDPQSECWRV------------------------------------------------ 504 (552)
T ss_dssp CTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEE------------------------------------------------
T ss_pred cCCCCcccCCCCCHHHHHHHhCCCcCCCEEEe------------------------------------------------
Confidence 1 00011356778889999 77776
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++++++.+++++|.+. ++|++|+++|.+
T Consensus 505 -----------------------~~~~~l~~al~~a~~~-~gp~liev~~~~ 532 (552)
T 1ovm_A 505 -----------------------SEAEQLADVLEKVAHH-ERLSLIEVMLPK 532 (552)
T ss_dssp -----------------------CBHHHHHHHHHHHTTC-SSEEEEEEECCT
T ss_pred -----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEcCc
Confidence 3688899999998875 789999999986
No 61
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=98.94 E-value=1.6e-10 Score=102.95 Aligned_cols=62 Identities=53% Similarity=0.852 Sum_probs=60.5
Q ss_pred cceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|.|.+|+++.||.|++||+|++||+||+..+|+||.+|+|.++.+++|+.|..|++|+.|..
T Consensus 11 G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~ 72 (85)
T 2k7v_A 11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 72 (85)
T ss_dssp CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999974
No 62
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.94 E-value=6.3e-10 Score=132.27 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=95.4
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRG 269 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~ 269 (929)
.|+||.|++.|+|.| ++.+ +++|+|++|||++. +.+++|..|++++|+.+++|+|||.+++......
T Consensus 421 ~g~mG~~l~~A~G~a-----la~~------~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~ 487 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQ-----CVSG------GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQP 487 (565)
T ss_dssp TCCTTCHHHHHHHHH-----HHTT------TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCT
T ss_pred cccccccchHHHHHH-----HhCC------CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecc
Confidence 589999999999999 5432 56899999999999 8899999999999999999999999887432211
Q ss_pred ----cccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHH
Q psy2375 270 ----NSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLK 345 (929)
Q Consensus 270 ----~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~ 345 (929)
+.....++...++++||..++|
T Consensus 488 ~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------------ 513 (565)
T 2nxw_A 488 ESAFNDLDDWRFADMAAGMGGDGVRV------------------------------------------------------ 513 (565)
T ss_dssp TCGGGBCCCCCHHHHTGGGTSEEEEE------------------------------------------------------
T ss_pred cCCCCcCCCCCHHHHHHHcCCCEEEe------------------------------------------------------
Confidence 0011246889999999999887
Q ss_pred HHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCe-EEEEeeec
Q psy2375 346 MIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPT-VLLIKSIK 391 (929)
Q Consensus 346 ~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~-vI~~~T~K 391 (929)
++++++.+++++|.+. ++|+ +|+++|.+
T Consensus 514 -----------------~~~~el~~al~~a~~~-~gp~~liev~~~~ 542 (565)
T 2nxw_A 514 -----------------RTRAELKAALDKAFAT-RGRFQLIEAMIPR 542 (565)
T ss_dssp -----------------CBHHHHHHHHHHHHHC-CSSCEEEEEECCT
T ss_pred -----------------CCHHHHHHHHHHHHhc-CCCeEEEEEEccc
Confidence 2678999999999876 5788 99999975
No 63
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.94 E-value=3.2e-10 Score=135.46 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=97.6
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRG 269 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~ 269 (929)
.|+||.|++.|+|.| ++. .+++|+|++|||++..+ +++|+.|++++|+.+++|+|||.+.+.+....
T Consensus 423 ~g~mG~~l~~AiGaa-----la~------~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~ 489 (589)
T 2pgn_A 423 EGILGCGFPMALGAQ-----LAE------PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMN 489 (589)
T ss_dssp TCCTTCHHHHHHHHH-----HHC------TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHH
T ss_pred cchhhhHHHHHHHHH-----HhC------CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHH
Confidence 599999999999999 543 25789999999999864 79999999999999999999999887654311
Q ss_pred --------cccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 270 --------NSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 270 --------~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
......++...++++||..++|
T Consensus 490 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-------------------------------------------------- 519 (589)
T 2pgn_A 490 HQFGQNNWTEFMNPDWVGIAKAFGAYGESV-------------------------------------------------- 519 (589)
T ss_dssp HHHSSCCSCBCCCCCHHHHHHHHTCEEEEC--------------------------------------------------
T ss_pred hhcCCCccccCCCCCHHHHHHHCCCeEEEE--------------------------------------------------
Confidence 0001246788889999988876
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccCCcc
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGR 397 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G~~~ 397 (929)
+ +++++.+++++|.+. ++|++|+++|.++.+..+
T Consensus 520 -------------------~--~~~el~~al~~a~~~-~gp~liev~~~~~~~~~~ 553 (589)
T 2pgn_A 520 -------------------R--ETGDIAGALQRAIDS-GKPALIEIPVSKTQGLAS 553 (589)
T ss_dssp -------------------T--TTCCHHHHHHHHHHH-CSCEEEEEECCSSSSTTT
T ss_pred -------------------C--CHHHHHHHHHHHHhC-CCCEEEEEEecCCCCcCc
Confidence 2 345678888888775 789999999999877654
No 64
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.91 E-value=8.4e-10 Score=131.32 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=94.2
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccc
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVR 268 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~ 268 (929)
..|+||.|++.|+|.| ++. .+++|+|++|||++.. .+++|+.|++++|+.+++|+|||.+.+.+...
T Consensus 423 ~~g~mG~~l~~A~Gaa-----la~------~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~ 489 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQ-----IAD------KESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREIH 489 (570)
T ss_dssp TTCCTTTHHHHHHHHH-----HHC------TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHS
T ss_pred cchhhhhhHHHHHHHH-----HhC------CCCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHHh
Confidence 4689999999999999 543 2579999999999976 58889999999999999999999998754322
Q ss_pred cc-----ccchHHHHHHHhhCCce-----EEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 269 GN-----SKIIQELEAHFYGVGWN-----VIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 269 ~~-----~~~~~~l~~~f~~~Gw~-----vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
+. .....++.++++++||. .++|
T Consensus 490 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v----------------------------------------------- 522 (570)
T 2vbf_A 490 GPTQSYNDIPMWNYSKLPETFGATEDRVVSKIV----------------------------------------------- 522 (570)
T ss_dssp CTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEE-----------------------------------------------
T ss_pred ccCCCccCCCCCCHHHHHHHcCCCcCCcceEEe-----------------------------------------------
Confidence 10 00123577888999997 7776
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecc
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKG 392 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG 392 (929)
++++++.++++++....++|++|+++|.+.
T Consensus 523 ------------------------~~~~el~~al~~a~~~~~~p~liev~~~~~ 552 (570)
T 2vbf_A 523 ------------------------RTENEFVSVMKEAQADVNRMYWIELVLEKE 552 (570)
T ss_dssp ------------------------CBHHHHHHHHHHHHHCTTSEEEEEEECCTT
T ss_pred ------------------------cCHHHHHHHHHHHHhcCCCcEEEEEEcCcc
Confidence 368899999998532347899999999853
No 65
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.91 E-value=2.4e-09 Score=93.11 Aligned_cols=64 Identities=31% Similarity=0.446 Sum_probs=61.0
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-..|.|.+|+++.||.|++||+|+.|+++|+..+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 14 ~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 14 PLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 3568999999999999999999999999999999999999999999999999999999999874
No 66
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.91 E-value=2.6e-09 Score=91.91 Aligned_cols=63 Identities=37% Similarity=0.619 Sum_probs=60.4
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
..|.+.+|+++.||.|++||+|+.+|++|+..+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999999874
No 67
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.89 E-value=2e-09 Score=127.53 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=93.1
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccc-
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPV- 267 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v- 267 (929)
..|+||.|++.|+|.| ++. .+++|+|++|||++. +.+++|+.|++++|+.+++|+|||.+.+-...
T Consensus 404 ~~g~mG~~l~~AiGaa-----la~------~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~ 470 (549)
T 3eya_A 404 NHGSMANAMPQALGAQ-----ATE------PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEM 470 (549)
T ss_dssp TTCCTTCHHHHHHHHH-----HHS------TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC----
T ss_pred CCchhhhHHHHHHHHH-----HhC------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHH
Confidence 4589999999999999 543 257899999999996 55899999999999999999999987652110
Q ss_pred -------cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCC
Q psy2375 268 -------RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKH 340 (929)
Q Consensus 268 -------~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~ 340 (929)
.++.....++....+++|+..++|
T Consensus 471 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------- 501 (549)
T 3eya_A 471 KAGGYLTDGTELHDTNFARIAEACGITGIRV------------------------------------------------- 501 (549)
T ss_dssp --------CCBCCCCCHHHHHHHTTSEEEEE-------------------------------------------------
T ss_pred HhcCCCCcCCcCCCCCHHHHHHHcCCcEEEe-------------------------------------------------
Confidence 011001236788889999988887
Q ss_pred hhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 341 PKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 341 ~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
++++++.+++++|.+. ++|++|+++|.+-.
T Consensus 502 ----------------------~~~~~l~~al~~a~~~-~gp~liev~~~~~~ 531 (549)
T 3eya_A 502 ----------------------EKASEVDEALQRAFSI-DGPVLVDVVVAKEE 531 (549)
T ss_dssp ----------------------CSGGGHHHHHHHHHHS-SSCEEEEEEBCCCC
T ss_pred ----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 3567788999999886 78999999998643
No 68
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=98.85 E-value=6.3e-10 Score=101.18 Aligned_cols=63 Identities=25% Similarity=0.416 Sum_probs=26.0
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
.+|.|.+|+++.||.|++||+|++||++|+..+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 32 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 32 MPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp SSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 579999999999999999999999999999999999999999999999999999999999874
No 69
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.84 E-value=2.8e-09 Score=129.12 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=61.8
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-.+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|.++.+++|+.|+.|++|++|+
T Consensus 618 p~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 618 PMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CSCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999985
No 70
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.79 E-value=5.7e-09 Score=95.72 Aligned_cols=65 Identities=26% Similarity=0.434 Sum_probs=61.9
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-..|.|.+|+++.||.|++||+|+.||++|+..+|+||.+|+|.++.+++|+.|..|++|+.|..
T Consensus 20 ~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 20 PMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp SSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999864
No 71
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.78 E-value=1.2e-08 Score=121.38 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=93.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCC-cccccc-
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQ-RLDGPV- 267 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~-~idg~v- 267 (929)
.|+||.|++.|+|.| ++ .+++|+|++|||++. +.+++|..|.+++|+.+++|+|||.+ ++....
T Consensus 425 ~g~~G~~l~~AiGaa-----la-------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~ 490 (568)
T 2c31_A 425 WGVMGIGMGYCVAAA-----AV-------TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEADP 490 (568)
T ss_dssp TTCSSCHHHHHHHHH-----HH-------HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCS
T ss_pred CccccccHHHHHHHH-----hC-------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHh
Confidence 589999999999999 43 246899999999996 57899999999999988889999873 443211
Q ss_pred -----cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChh
Q psy2375 268 -----RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPK 342 (929)
Q Consensus 268 -----~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~ 342 (929)
........++.+..+++|+..++|
T Consensus 491 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v--------------------------------------------------- 519 (568)
T 2c31_A 491 QPGVISCTRLTRGRYDMMMEAFGGKGYVA--------------------------------------------------- 519 (568)
T ss_dssp BTTBCCTTBCCCCCHHHHHHTTTCEEEEE---------------------------------------------------
T ss_pred hcCCcccCcCCCCCHHHHHHHcCCeEEEe---------------------------------------------------
Confidence 010011247889999999999887
Q ss_pred HHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 343 LLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 343 ~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
++++++.+++++|.+. ++|++|.++|.+..
T Consensus 520 --------------------~~~~el~~al~~a~~~-~~p~liev~~~~~~ 549 (568)
T 2c31_A 520 --------------------NTPAELKAALEEAVAS-GKPCLINAMIDPDA 549 (568)
T ss_dssp --------------------SSHHHHHHHHHHHHHH-TSCEEEEEEBCTTS
T ss_pred --------------------CCHHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 3688899999998865 78999999998764
No 72
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.74 E-value=1.3e-08 Score=120.90 Aligned_cols=120 Identities=20% Similarity=0.118 Sum_probs=92.7
Q ss_pred CcccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCC-ccccc-
Q psy2375 189 PTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQ-RLDGP- 266 (929)
Q Consensus 189 ~tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~-~idg~- 266 (929)
..|+||.|++.|+|.| ++ .+++|+|++|||++. +.+++|..|.+++|+.+++|+|||.+ ++...
T Consensus 419 ~~g~~G~~l~~AiGaa-----~a-------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~ 484 (564)
T 2q28_A 419 TWGVMGIGMGYAIGAS-----VT-------SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVD 484 (564)
T ss_dssp TTTCTTCHHHHHHHHH-----HH-------HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCC
T ss_pred CCCcccchHHHHHHHh-----hc-------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHH
Confidence 3589999999999999 43 256899999999996 56788999999999989999999974 44221
Q ss_pred ------cccc-ccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCC
Q psy2375 267 ------VRGN-SKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGK 339 (929)
Q Consensus 267 ------v~~~-~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~ 339 (929)
.... .....++.+.++++|+..++|
T Consensus 485 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v------------------------------------------------ 516 (564)
T 2q28_A 485 LSGAGAPSPTDLLHHARYDKLMDAFRGVGYNV------------------------------------------------ 516 (564)
T ss_dssp TTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEE------------------------------------------------
T ss_pred HhccCCccccccCCCCCHHHHHHHcCCeEEEe------------------------------------------------
Confidence 0100 001235778888999988887
Q ss_pred ChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 340 HPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 340 ~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
++++++.+++++|.+. ++|++|.++|.+...
T Consensus 517 -----------------------~~~~el~~al~~a~~~-~~p~liev~~~~~~~ 547 (564)
T 2q28_A 517 -----------------------TTTDELRHALTTGIQS-RKPTIINVVIDPAAG 547 (564)
T ss_dssp -----------------------CSHHHHHHHHHHHHHH-TSCEEEEEEBCTTSS
T ss_pred -----------------------CCHHHHHHHHHHHHhC-CCCEEEEEEeccccC
Confidence 3688899999999865 789999999987543
No 73
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.73 E-value=9.4e-09 Score=131.20 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=60.5
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEE
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i 925 (929)
..|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++|+.|++||+|++|
T Consensus 1174 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1174 YTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp SCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999987
No 74
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.69 E-value=1.3e-08 Score=129.59 Aligned_cols=65 Identities=29% Similarity=0.533 Sum_probs=62.4
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-.+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|.++.+++|+.|..|++|+.|++
T Consensus 1083 p~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1083 QMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp SSSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999975
No 75
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.69 E-value=1.8e-09 Score=130.71 Aligned_cols=66 Identities=24% Similarity=0.446 Sum_probs=0.0
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeec
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQ 928 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~ 928 (929)
-.+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|.++.+++|+.|+.|++|++|+++
T Consensus 608 p~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 608 PMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 467999999999999999999999999999999999999999999999999999999999999753
No 76
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.69 E-value=5.3e-09 Score=125.29 Aligned_cols=118 Identities=9% Similarity=-0.005 Sum_probs=91.5
Q ss_pred cccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccccccc
Q psy2375 190 TVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRG 269 (929)
Q Consensus 190 tgs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~ 269 (929)
.++||.+++.|+|.| ++ . +++|+|++|||++.. .+++|+.|++++|+.+|+|+|||.+.+.+.+..
T Consensus 454 ~~~ig~~l~~AiGaa-----la-~------~~~vv~i~GDGsf~~--~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~ 519 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVC-----EG-T------KAPVTLVIGDLSFYH--DLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQ 519 (604)
T ss_dssp TCCSSSHHHHHHHHH-----HH-H------TSCEEEEEEHHHHHH--TGGGGHHHHHHCCCEEEEEEECSSCGGGGGSGG
T ss_pred cCCcCcHHHHHHHHH-----hc-C------CCcEEEEEccHHHHh--HHHHHHHhhhcCCCeEEEEEeCCCCcccccCCC
Confidence 367999999999999 43 1 468999999999975 467899999999998999999999988655432
Q ss_pred cc-----------cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccC
Q psy2375 270 NS-----------KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338 (929)
Q Consensus 270 ~~-----------~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg 338 (929)
.. ....++.+.++++||..++|
T Consensus 520 ~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----------------------------------------------- 552 (604)
T 2x7j_A 520 ASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCP----------------------------------------------- 552 (604)
T ss_dssp GSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECC-----------------------------------------------
T ss_pred CccchhhHhhccCCCCCCHHHHHHHcCCeEEec-----------------------------------------------
Confidence 11 00124667777788777665
Q ss_pred CChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 339 KHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 339 ~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
++++++.+++++|.+. ++|+||.++|.+..
T Consensus 553 ------------------------~~~~el~~al~~a~~~-~gp~liev~~~~~~ 582 (604)
T 2x7j_A 553 ------------------------ASWDEFKTAYAPQADK-PGLHLIEIKTDRQS 582 (604)
T ss_dssp ------------------------SSHHHHHHHCCCCCSS-CCEEEEEEECCHHH
T ss_pred ------------------------CCHHHHHHHHHHHHhC-CCCEEEEEECCccc
Confidence 2678899999888765 78999999998753
No 77
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.55 E-value=9.3e-08 Score=92.47 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=57.1
Q ss_pred cccCcCCccccceeeeee-ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEE---eecCCCccc---CCC-eEEEEee
Q psy2375 856 KVPNIGDLSEVEVSTVMV-KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREI---KVKVGDKIS---KDS-QILILEE 927 (929)
Q Consensus 856 al~~LG~i~eg~V~~~~v-k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i---~~~~G~~V~---~G~-~L~~i~~ 927 (929)
+.+.+|+ |..+.+ ++||+|++||+|++||+|||..+|.||.+|+|.++ +++.++.|. .|+ .|+.|..
T Consensus 40 a~~~lG~-----i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 40 AQEQLGD-----VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEI 114 (136)
T ss_dssp HHHHHCS-----EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred hcccCCC-----cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEE
Confidence 4455554 333333 99999999999999999999999999999999999 888999999 898 9998874
No 78
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=98.44 E-value=2e-07 Score=88.15 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEE
Q psy2375 725 KLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVA 803 (929)
Q Consensus 725 g~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtv 803 (929)
+.|++|+++|+++..|+ |++.|+++ |+++.|+++++++|||.+. +.++++++ ..||++
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~-Gi~v~vi~~r~~~P~d~~~-------------------l~~~~~~~-~~vvvv 71 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEE-GISANLLYLKMFSPFPTEF-------------------VKNVLSSA-NLVIDV 71 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHT-TCCEEEEEECSSCSCCHHH-------------------HHHHHTTC-SCCCCC
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHC-CCceEEEEECeEecCCHHH-------------------HHHHHcCC-CEEEEE
Confidence 46999999999999999 99999998 9999999999999998754 35566666 689999
Q ss_pred eccc-chhHHHHHhhcc
Q psy2375 804 TDYM-RLFAEQVRAFIP 819 (929)
Q Consensus 804 ed~~-~~~~~~i~~~l~ 819 (929)
|++. .++++.|+..+.
T Consensus 72 E~~~~G~l~~~i~~~~~ 88 (118)
T 3ju3_A 72 ESNYTAQAAQMIKLYTG 88 (118)
T ss_dssp CCCCCCCHHHHHHHHHC
T ss_pred ECCCCCcHHHHHHHHcC
Confidence 9986 478888876554
No 79
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.43 E-value=4.6e-08 Score=118.18 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=61.8
Q ss_pred CccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 862 DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 862 ~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
.-.+|+|.+|.|++||.|++||+|++||+|||+++|+||.+|+|.++.+++|+.|..|++|++|+
T Consensus 654 ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 654 APMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999999999999999999874
No 80
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.43 E-value=1.9e-07 Score=110.79 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=77.5
Q ss_pred ccCchhHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccccccc
Q psy2375 191 VSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGN 270 (929)
Q Consensus 191 gs~G~g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~v~~~ 270 (929)
|.||. ++.|+|.| ++ + +++|+|++|||++. +...+|..|.+++|+-+++|+||+.+.+-+.+...
T Consensus 417 g~~G~-l~~A~Gaa-----~a-~------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~ 481 (556)
T 3hww_A 417 GIDGL-LSTAAGVQ-----RA-S------GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTP 481 (556)
T ss_dssp CSSSH-HHHHHHHH-----HH-H------CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------
T ss_pred ccccH-HHHHHHHH-----hc-C------CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccCCCCc
Confidence 34444 89999999 43 2 46899999999995 67888999999999877777888876664432110
Q ss_pred c---------cchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCCh
Q psy2375 271 S---------KIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341 (929)
Q Consensus 271 ~---------~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~ 341 (929)
. ...-++.+..+++|+..++|
T Consensus 482 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-------------------------------------------------- 511 (556)
T 3hww_A 482 QSERERFYLMPQNVHFEHAAAMFELKYHRP-------------------------------------------------- 511 (556)
T ss_dssp -------CCCCCCCCSHHHHHHTTCEEECC--------------------------------------------------
T ss_pred chhHHHhccCCCCCCHHHHHHHcCCcEEec--------------------------------------------------
Confidence 0 00123455556666655544
Q ss_pred hHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 342 KLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 342 ~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
++.+++.+|+++|.+. ++|+||+++|.+
T Consensus 512 ---------------------~~~~~l~~al~~a~~~-~gp~liev~~~~ 539 (556)
T 3hww_A 512 ---------------------QNWQELETAFADAWRT-PTTTVIEMVVND 539 (556)
T ss_dssp ---------------------SSHHHHHHHHHHHTTS-SSEEEEEEECCS
T ss_pred ---------------------CCHHHHHHHHHHHHhC-CCCEEEEEECCc
Confidence 3678899999999876 789999999964
No 81
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.37 E-value=2.4e-07 Score=110.33 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=78.5
Q ss_pred CcccCch--hHHHHHHHHHHHHHHhhccccCCCCcEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCccccc
Q psy2375 189 PTVSMGL--GPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGP 266 (929)
Q Consensus 189 ~tgs~G~--g~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg~ 266 (929)
+.|++|. +++.|+|.| + .+++|+|++|||++. +.+++|..|.+++|+-+++|+|||.+.+-..
T Consensus 432 ~~G~~G~~g~l~~AiGaa-----~--------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~ 496 (578)
T 3lq1_A 432 NRGANGIDGVVSSALGAS-----V--------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSF 496 (578)
T ss_dssp CCSSCCSSSHHHHHHHHT-----T--------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-------
T ss_pred CCCccccccHHHHHHHHh-----c--------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccccc
Confidence 4566666 588899887 2 257899999999996 7788999999999987778888887766432
Q ss_pred cccc------cc-----chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhh
Q psy2375 267 VRGN------SK-----IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKN 335 (929)
Q Consensus 267 v~~~------~~-----~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~ 335 (929)
.... .. ..-++.+..+++|+..++|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-------------------------------------------- 532 (578)
T 3lq1_A 497 LPQANEPKYFESLFGTSTELDFRFAAAFYDADYHEA-------------------------------------------- 532 (578)
T ss_dssp ------------------CCCTHHHHHHTTCEEEEC--------------------------------------------
T ss_pred cccccccchhhhhccCCCCCCHHHHHHHcCCceEec--------------------------------------------
Confidence 1000 00 0124566667777766665
Q ss_pred ccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEeeecccC
Q psy2375 336 FFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 336 ~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~T~KG~G 394 (929)
++.+++.+|+++|.+. ++|+||.+.|-+-.-
T Consensus 533 ---------------------------~~~~el~~al~~a~~~-~gp~liev~~~~~~~ 563 (578)
T 3lq1_A 533 ---------------------------KSVDELEEAIDKASYH-KGLDIIEVKTNRHEN 563 (578)
T ss_dssp ---------------------------CSHHHHHHHHHHHTTS-SSEEEEEEC------
T ss_pred ---------------------------CCHHHHHHHHHHHHhC-CCCEEEEEECCcccc
Confidence 3778899999999875 789999999976433
No 82
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.35 E-value=1.6e-07 Score=119.80 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=55.2
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
-.+|+|.+|.|++||.|++||+|++||+|||+++|+||.+|+|.++.+++|+.|+.|++|++|+
T Consensus 1101 p~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1101 PMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SSCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 4689999999999999999999999999999999999999999999999999999999999886
No 83
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.27 E-value=1.5e-05 Score=101.96 Aligned_cols=187 Identities=11% Similarity=0.094 Sum_probs=116.8
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHH-HhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAW-LAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~-~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++....+|.+++++ +.|.|..| .+++..|-+. |+.-+.+.++ .++ ...|-|+.+...++.+ .|.+=+
T Consensus 55 ~~v~~~esE~aA~~a----aiGAa~aG--aR~~t~Ts~~-Gl~lm~e~l~~~ag-~~~P~Vi~va~R~g~~---~glsi~ 123 (1231)
T 2c42_A 55 LTIREMQSEAGAAGA----VHGALAAG--ALTTTFTASQ-GLLLMIPNMYKISG-ELLPGVFHVTARAIAA---HALSIF 123 (1231)
T ss_dssp CEEEECSSHHHHHHH----HHHHHHTT--CCEEEEECHH-HHHHHHHHHHHHHH-TTCCCEEEEEECCCCS---SSBCCS
T ss_pred eEEEecCChHHHHHH----HHHHHHcC--ChHhhhccHH-HHHHHHHHHHHHhC-CCCCEEEEECCCCccC---CCCcCC
Confidence 688889999998876 33456667 8999876443 3444446554 444 4677777665544322 121112
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHH----hhccCCCceEEEEEecC--C---CCCCCCCCC------cc---
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGL----HCMISNQEDVFYYITVM--N---ENYSHPGLK------KG--- 704 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al----~~~~g~~~~v~~rl~~~--~---e~~~~p~~~------~~--- 704 (929)
+-|+-.++...+++.|+.|+++.|+..++..|+ +. .. ||+++.... . ++..+|... ..
T Consensus 124 ~~hsd~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~---~~-PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~ 199 (1231)
T 2c42_A 124 GDHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAIES---NV-PFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKAL 199 (1231)
T ss_dssp CCSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHH---CC-CEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHH
T ss_pred CchhhHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHc---CC-CEEEEecCcccccceeeeecCCHHHHHhhcChhhh
Confidence 333334566789999999999999999998873 33 12 366665431 1 121122100 00
Q ss_pred --c-------ccccccc---------------------------------------eEE-Ee-ccCCcCCCCcEEEEEeC
Q psy2375 705 --Q-------EKGIIKG---------------------------------------LYL-LK-NHNNEKSKLKVQLIGSG 734 (929)
Q Consensus 705 --~-------~~~i~~G---------------------------------------~y~-l~-~g~~~~~g~dv~Lia~G 734 (929)
. ...+..| .|. +. .+ .++.|++||++|
T Consensus 200 ~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g---~~dAd~vIVa~G 276 (1231)
T 2c42_A 200 AEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVG---APDAERVIVSMG 276 (1231)
T ss_dssp HHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEE---CTTCSEEEEECS
T ss_pred hhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeec---CCCCCEEEEEeC
Confidence 0 0000011 110 11 01 124699999999
Q ss_pred hhHHHHH-HHHHHhccCCCceEEEEcccccccccch
Q psy2375 735 AILREIL-ASKILLQEWDIDSAVWSATSFTLLARDG 769 (929)
Q Consensus 735 ~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~ 769 (929)
++...+. |++.|+++ |+++.|++++++.||+.+.
T Consensus 277 s~~~~~~eAv~~L~~~-G~kvgvl~lr~~rPfp~~~ 311 (1231)
T 2c42_A 277 SSCETIEEVINHLAAK-GEKIGLIKVRLYRPFVSEA 311 (1231)
T ss_dssp THHHHHHHHHHHHHTT-TCCEEEEEESEEESCCHHH
T ss_pred HHHHHHHHHHHHHHhc-CCceEEEEEEEeCCCCHHH
Confidence 9999999 99999998 9999999999999998754
No 84
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.24 E-value=6e-07 Score=84.24 Aligned_cols=64 Identities=23% Similarity=0.475 Sum_probs=58.7
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEeccee-----------------------------eeeecCCCEEEEEEeecCCC
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVS-----------------------------MEIPSSHNGVVREIKVKVGD 914 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~-----------------------------~~I~Ap~~G~v~~i~~~~G~ 914 (929)
..|.|.+++++.||.|++||+|+.|++.++. ..|+||.+|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 4689999999999999999999999987655 38999999999999999999
Q ss_pred cccCC-CeEEEEee
Q psy2375 915 KISKD-SQILILEE 927 (929)
Q Consensus 915 ~V~~G-~~L~~i~~ 927 (929)
.|..| ++|+.|.+
T Consensus 88 ~v~~g~~~l~~i~~ 101 (116)
T 2k32_A 88 YVSASTTELVRVTN 101 (116)
T ss_dssp EECTTTSCCEEEEC
T ss_pred EEcCCCcEEEEEEC
Confidence 99999 99999865
No 85
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.06 E-value=2.8e-06 Score=81.37 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=46.9
Q ss_pred eecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeec---CCCcc---cCCC-eEEEEee
Q psy2375 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK---VGDKI---SKDS-QILILEE 927 (929)
Q Consensus 873 vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~---~G~~V---~~G~-~L~~i~~ 927 (929)
.+.|++|++||++|+||+||+..+|.||.+|+|+++..+ ..+.| ..|+ -|+.|..
T Consensus 44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~ 105 (128)
T 1onl_A 44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKP 105 (128)
T ss_dssp BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEE
Confidence 489999999999999999999999999999999999754 45666 5566 7777763
No 86
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.04 E-value=3.3e-06 Score=80.88 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=51.9
Q ss_pred cccCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeec---CCCccc---CCC-eEEEEee
Q psy2375 856 KVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK---VGDKIS---KDS-QILILEE 927 (929)
Q Consensus 856 al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~---~G~~V~---~G~-~L~~i~~ 927 (929)
+.+.+|++....+ .++|++|++||++|+||+||+..+|.||.+|+|.++..+ ..+.|. .|+ -|+.|..
T Consensus 32 a~~~lG~i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~ 106 (128)
T 3a7l_A 32 AQELLGDMVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKA 106 (128)
T ss_dssp HHHHHCSEEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred HhccCCceEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEE
Confidence 4455554332222 488999999999999999999999999999999999764 445565 565 7777753
No 87
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.99 E-value=7.9e-06 Score=78.54 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=51.8
Q ss_pred cccCcCCccccceeeeee-ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCC---Cccc---CCC-eEEEEee
Q psy2375 856 KVPNIGDLSEVEVSTVMV-KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG---DKIS---KDS-QILILEE 927 (929)
Q Consensus 856 al~~LG~i~eg~V~~~~v-k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G---~~V~---~G~-~L~~i~~ 927 (929)
+.+.+|+ |..+.+ ++|++|++||++++||+||+..+|.||.+|+|.++..+.+ +.|. .|+ -|+.|..
T Consensus 31 a~~~lG~-----i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~ 105 (131)
T 1hpc_A 31 AQDHLGE-----VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKP 105 (131)
T ss_dssp HHHHHCS-----EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred hcccCCC-----ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEE
Confidence 3445554 444444 8999999999999999999999999999999999975544 4564 455 7777763
No 88
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.23 E-value=0.00041 Score=65.93 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=37.0
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCC
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G 913 (929)
+.|++|++|+++++||++|+..+|.||.+|+|.++..+..
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~ 80 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALA 80 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGT
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhh
Confidence 7899999999999999999999999999999999975543
No 89
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.06 E-value=0.0015 Score=83.88 Aligned_cols=102 Identities=16% Similarity=0.303 Sum_probs=71.0
Q ss_pred CcEEEEEEcCC-ccCCcccHHHHHHHHHcCCCeEEEEEecCCCcccc-------ccccc------cc--chHHHHHHHhh
Q psy2375 220 NRKIWILCGDG-EMDEPESISEISMAAREKLDNLIMIVNCNLQRLDG-------PVRGN------SK--IIQELEAHFYG 283 (929)
Q Consensus 220 ~~~v~~~~GDG-e~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~idg-------~v~~~------~~--~~~~l~~~f~~ 283 (929)
+++|||+.||| .++ +....|..|.+.++|=.++|+|++.+..-| +.... ++ ...++....++
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 887 447799999999998667777777554432 11100 00 01256667777
Q ss_pred CCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC
Q psy2375 284 VGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH 363 (929)
Q Consensus 284 ~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh 363 (929)
+|...+.+. . -+.
T Consensus 1031 ~G~~~va~~------------------------------------------------------------------~-v~~ 1043 (1231)
T 2c42_A 1031 YGYVYVATV------------------------------------------------------------------S-MGY 1043 (1231)
T ss_dssp TSSSEEEEE------------------------------------------------------------------C-TTT
T ss_pred CCCCEEEEE------------------------------------------------------------------e-ccC
Confidence 777665431 0 124
Q ss_pred cHHHHHHHHHHHHhCCCCCeEEEEeeec
Q psy2375 364 DLRKIYSAFKMAQKNKDKPTVLLIKSIK 391 (929)
Q Consensus 364 D~~~v~~a~~~a~~~~~~P~vI~~~T~K 391 (929)
+++++.+++++|.++ ++|+||++.+..
T Consensus 1044 ~~~~l~~al~eAl~~-~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1044 SKQQFLKVLKEAESF-PGPSLVIAYATC 1070 (1231)
T ss_dssp CHHHHHHHHHHHHHS-SSCEEEEEECCC
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEEeecC
Confidence 889999999999987 789999998854
No 90
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.01 E-value=0.00067 Score=77.35 Aligned_cols=64 Identities=17% Similarity=0.350 Sum_probs=56.7
Q ss_pred cccceeeeee-ecCCeecCCCeEEEEEec------------------------------------------------cee
Q psy2375 864 SEVEVSTVMV-KIGDTIKIDQSLLVVESE------------------------------------------------KVS 894 (929)
Q Consensus 864 ~eg~V~~~~v-k~Gd~V~~Gd~l~~iEt~------------------------------------------------K~~ 894 (929)
..|.|.+++| +.||.|++||+|+.|++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4589999998 999999999999999941 124
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|+||.+|+|.++.+++|+.|.+|++|+.|..
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 689999999999999999999999999999853
No 91
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.99 E-value=0.0009 Score=64.82 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=37.3
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCC
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~ 914 (929)
++|++|++||++++||++|+..+|.||.+|+|+++.-+..+
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 78999999999999999999999999999999999755443
No 92
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.92 E-value=0.00087 Score=64.58 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=35.2
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEee
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~ 910 (929)
++|++|++|++++.||++|+..+|.||.+|+|+++.-
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 7899999999999999999999999999999999853
No 93
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=96.82 E-value=0.00096 Score=74.13 Aligned_cols=64 Identities=16% Similarity=0.355 Sum_probs=56.9
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecce--------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKV-------------------------------------------------- 893 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~-------------------------------------------------- 893 (929)
..|.|.++++++||.|++||+|+.|++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999987421
Q ss_pred --------------------------eeeeecCCCEEEEEEeecCCCcccC-CCeEEEEee
Q psy2375 894 --------------------------SMEIPSSHNGVVREIKVKVGDKISK-DSQILILEE 927 (929)
Q Consensus 894 --------------------------~~~I~Ap~~G~v~~i~~~~G~~V~~-G~~L~~i~~ 927 (929)
...|+||.+|+|.++.+.+|+.|.. |++|+.|..
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~ 204 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD 204 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEec
Confidence 2579999999999999999999999 999998864
No 94
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=96.75 E-value=0.00097 Score=73.57 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=55.4
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecce--------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKV-------------------------------------------------- 893 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~-------------------------------------------------- 893 (929)
..|.|.++++++||.|++||+|+.|++...
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 458999999999999999999999986410
Q ss_pred -----------------------------------eeeeecCCCEEEEEEeecCCCcccCCCe---EEEEee
Q psy2375 894 -----------------------------------SMEIPSSHNGVVREIKVKVGDKISKDSQ---ILILEE 927 (929)
Q Consensus 894 -----------------------------------~~~I~Ap~~G~v~~i~~~~G~~V~~G~~---L~~i~~ 927 (929)
...|+||.+|+|.++.+.+|+.|..|++ |+.|..
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 189 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 189 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence 1459999999999999999999999997 887753
No 95
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=96.73 E-value=0.00041 Score=74.37 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=55.8
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecc---------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEK--------------------------------------------------- 892 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K--------------------------------------------------- 892 (929)
..|.|.+++++.||.|++||+|+.|++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998631
Q ss_pred --------------------eeeeeecCCCEEEEEEeecCCCcccCC--CeEEEEee
Q psy2375 893 --------------------VSMEIPSSHNGVVREIKVKVGDKISKD--SQILILEE 927 (929)
Q Consensus 893 --------------------~~~~I~Ap~~G~v~~i~~~~G~~V~~G--~~L~~i~~ 927 (929)
-...|+||.+|+|..+.+++|+.|..| ++|+.|..
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEec
Confidence 124799999999999999999999999 58888753
No 96
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.40 E-value=0.0043 Score=60.80 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred ecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEee
Q psy2375 874 KIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910 (929)
Q Consensus 874 k~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~ 910 (929)
++|++|++|++++.||+.|+..+|.||.+|+|+++.-
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 7899999999999999999999999999999999863
No 97
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.20 E-value=0.0018 Score=58.91 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=42.3
Q ss_pred CCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 882 DQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 882 Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|..+|.+|.++....|.||.+|+|.++.+++|+.|++||+|+.++.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 5566888999999999999999999999999999999999999984
No 98
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.20 E-value=0.0014 Score=73.41 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=55.4
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecce--------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKV-------------------------------------------------- 893 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~-------------------------------------------------- 893 (929)
..|.|.+++++.||.|++||+|+.|+....
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999975321
Q ss_pred -------eeeeecCCCEEEEEEeecCCCcccCC--CeEEEEee
Q psy2375 894 -------SMEIPSSHNGVVREIKVKVGDKISKD--SQILILEE 927 (929)
Q Consensus 894 -------~~~I~Ap~~G~v~~i~~~~G~~V~~G--~~L~~i~~ 927 (929)
...|+||.+|+|.++.+++|+.|..| ++|+.|..
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~ 172 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ 172 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence 25799999999999999999999995 88988753
No 99
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=95.50 E-value=0.0016 Score=72.56 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=53.7
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecce--------------------------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKV-------------------------------------------------- 893 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~-------------------------------------------------- 893 (929)
..|.|.++++++||.|++||+|+.|++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 458999999999999999999999986421
Q ss_pred -----------------------------------eeeeecCCCEEEEEEeecCCCcccCCCe---EEEE
Q psy2375 894 -----------------------------------SMEIPSSHNGVVREIKVKVGDKISKDSQ---ILIL 925 (929)
Q Consensus 894 -----------------------------------~~~I~Ap~~G~v~~i~~~~G~~V~~G~~---L~~i 925 (929)
...|+||.+|+|.++.+++|+.|..|++ |+.|
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i 188 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKV 188 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEE
Confidence 1359999999999999999999999998 6654
No 100
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.17 E-value=0.019 Score=48.32 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.1
Q ss_pred eeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+|.||.+|+|.++.+++|+.|+.||+|+.|+.
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~ 32 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILES 32 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEEC
Confidence 47899999999999999999999999999985
No 101
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=94.85 E-value=0.029 Score=47.37 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=30.9
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~ 38 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEA 38 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 468999999999999999999999999999985
No 102
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=94.57 E-value=0.068 Score=59.52 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=52.1
Q ss_pred cceeeeeeecCCeecCCCeEEEEEe----cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 866 VEVSTVMVKIGDTIKIDQSLLVVES----EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 866 g~V~~~~vk~Gd~V~~Gd~l~~iEt----~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+-+.+..++.|+.|++||+|+.|+. .++..+|.||.+|+|.... ....|..|+.|+.|..
T Consensus 275 ~G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~ia~ 338 (354)
T 3cdx_A 275 TGLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVVME 338 (354)
T ss_dssp CEEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEEee
Confidence 3477788899999999999999997 4888999999999997664 7889999999998863
No 103
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=94.57 E-value=0.029 Score=47.96 Aligned_cols=34 Identities=38% Similarity=0.600 Sum_probs=31.5
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEc
Confidence 3578999999999999999999999999999975
No 104
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.53 E-value=0.07 Score=59.82 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=54.7
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEe------cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEeecC
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVES------EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEEQY 929 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt------~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~~~ 929 (929)
...+-+....++.||.|++||+|+.|.. .....+|+||.+|+|.... .--.|..|+.|+.|-.+|
T Consensus 295 A~~~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~~i~~~~ 365 (368)
T 3fmc_A 295 APKAGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELYKVMTKV 365 (368)
T ss_dssp CSSCEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEEEEEESC
T ss_pred cCCCEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEeeee
Confidence 3456677899999999999999999987 4577899999999996665 557999999999987653
No 105
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.12 E-value=0.097 Score=57.79 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=51.9
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEec----ceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESE----KVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~----K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+-+.+..++.||.|++||+|+.|... +...+|+||.+|+|.... ..-.|..|+.|+.|..
T Consensus 263 ~~~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~Ia~ 328 (331)
T 3na6_A 263 EHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVIGV 328 (331)
T ss_dssp SSCEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEEEC
T ss_pred CCCeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEec
Confidence 3445777889999999999999999973 567899999999997765 4578899999998863
No 106
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=93.87 E-value=0.031 Score=49.01 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.+++|+.|+.||+|+.|+.
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence 469999999999999999999999999999974
No 107
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=93.57 E-value=0.056 Score=53.52 Aligned_cols=60 Identities=8% Similarity=0.237 Sum_probs=49.4
Q ss_pred cccceeeeeeecCCeecC----CCeEEEEEecceeeeeecCCCEEEEEE-------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKI----DQSLLVVESEKVSMEIPSSHNGVVREI------------------------------- 908 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~----Gd~l~~iEt~K~~~~I~Ap~~G~v~~i------------------------------- 908 (929)
-.|++.... +..|.|-. |+.++...++ ..++||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 346676654 67777666 8999888775 58899999999988
Q ss_pred ----eecCCCcccCCCeEEEEee
Q psy2375 909 ----KVKVGDKISKDSQILILEE 927 (929)
Q Consensus 909 ----~~~~G~~V~~G~~L~~i~~ 927 (929)
.+++||.|+.||+|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEECH
T ss_pred ccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999874
No 108
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=93.22 E-value=0.065 Score=52.67 Aligned_cols=59 Identities=7% Similarity=0.152 Sum_probs=48.1
Q ss_pred ccceeeeeeecCCeecC----CCeEEEEEecceeeeeecCCCEEEEE---------------------------------
Q psy2375 865 EVEVSTVMVKIGDTIKI----DQSLLVVESEKVSMEIPSSHNGVVRE--------------------------------- 907 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~----Gd~l~~iEt~K~~~~I~Ap~~G~v~~--------------------------------- 907 (929)
.|++... .+..|.|-. |+.++...++ ..+.||++|+|..
T Consensus 15 ~G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g 90 (154)
T 2gpr_A 15 DGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG 90 (154)
T ss_dssp SEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred CeEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence 4666665 366777666 8999988875 5899999999998
Q ss_pred --EeecCCCcccCCCeEEEEee
Q psy2375 908 --IKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 908 --i~~~~G~~V~~G~~L~~i~~ 927 (929)
+.+++||.|+.||+|+.++.
T Consensus 91 F~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 91 FESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp EEECCCTTCEECTTCEEEEECH
T ss_pred eEEEEcCCCEEcCCCEEEEECH
Confidence 48999999999999999874
No 109
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=92.82 E-value=0.051 Score=48.73 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=31.6
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~ 58 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEA 58 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEec
Confidence 4569999999999999999999999999999975
No 110
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=92.54 E-value=0.073 Score=48.13 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=32.1
Q ss_pred eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 893 VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-...|.||.+|+|.++.+++|+.|+.||+|+.|+.
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEES
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEc
Confidence 34578999999999999999999999999999974
No 111
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=92.50 E-value=0.055 Score=53.61 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=49.5
Q ss_pred cccceeeeeeecCCeecC----CCeEEEEEecceeeeeecCCCEEEEEE-------------------------------
Q psy2375 864 SEVEVSTVMVKIGDTIKI----DQSLLVVESEKVSMEIPSSHNGVVREI------------------------------- 908 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~----Gd~l~~iEt~K~~~~I~Ap~~G~v~~i------------------------------- 908 (929)
-.|++... .+..|.|-. |+.++...+ ...++||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 45777775 667777666 889987776 458899999999988
Q ss_pred ----eecCCCcccCCCeEEEEee
Q psy2375 909 ----KVKVGDKISKDSQILILEE 927 (929)
Q Consensus 909 ----~~~~G~~V~~G~~L~~i~~ 927 (929)
.+++||.|+.||+|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8899999999999999864
No 112
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=92.39 E-value=0.078 Score=45.68 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=30.6
Q ss_pred eeeecCCCEEEEEE-------eecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREI-------KVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i-------~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++ .+++|+.|+.||+|+.++.
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~ 44 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEA 44 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEe
Confidence 46899999999998 8999999999999999975
No 113
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=90.23 E-value=0.22 Score=54.89 Aligned_cols=60 Identities=7% Similarity=0.168 Sum_probs=46.5
Q ss_pred eeeeeeecCCeecCCCeEEEEEec-ceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 868 VSTVMVKIGDTIKIDQSLLVVESE-KVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 868 V~~~~vk~Gd~V~~Gd~l~~iEt~-K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
|.-..++.++-...=..-+.|+++ .-...|.|+.+|+|.++.+++|+.|++||+|+.|+.
T Consensus 30 v~~~~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 30 LAVAPATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp CCEEECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred eEEEEeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence 334444444444444556677775 567889999999999999999999999999999985
No 114
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=90.04 E-value=0.24 Score=54.26 Aligned_cols=43 Identities=16% Similarity=0.387 Sum_probs=37.0
Q ss_pred eEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 884 SLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 884 ~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.-+.|++. -...|.++.+|+|.++.+++|+.|++||+|+.|+.
T Consensus 22 ~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 22 ATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp EEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence 34566665 46689999999999999999999999999999975
No 115
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=89.57 E-value=0.14 Score=43.70 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=27.5
Q ss_pred ecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 898 PSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 898 ~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.++.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~ 40 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMT 40 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEES
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 357899999999999999999999999975
No 116
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=89.10 E-value=0.33 Score=41.60 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=25.0
Q ss_pred CEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 902 NGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 902 ~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+|+|.++.+++|+.|+.||+|+.++.
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~ 39 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEG 39 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEES
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 99999999999999999999999975
No 117
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=88.66 E-value=0.35 Score=43.16 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 900 SHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 900 p~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+|+|.++.+++|+.|+.||+|++|+.
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 43 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQS 43 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEEC
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEc
Confidence 3689999999999999999999999985
No 118
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=88.56 E-value=0.036 Score=48.61 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.6
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+|.+|.-|+|.++.+++|+.|+.||+|+.|+.
T Consensus 2 ~~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~ 35 (85)
T 2k7v_A 2 VKEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEG 35 (85)
T ss_dssp CSCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSC
T ss_pred CcEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEc
Confidence 3578888889999999999999999999999874
No 119
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=88.49 E-value=0.47 Score=41.58 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=26.0
Q ss_pred CCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 900 SHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 900 p~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+.+|+|.++++++|+.|+.||+|++|+.
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 44 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIET 44 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEEC
Confidence 4689999999999999999999999985
No 120
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=88.21 E-value=0.31 Score=41.90 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=28.3
Q ss_pred eecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 897 IPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 897 I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+-++.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~ 40 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLET 40 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEEC
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEe
Confidence 4467899999999999999999999999985
No 121
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=88.20 E-value=0.92 Score=49.82 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=50.2
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEe----cceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVES----EKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt----~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+.+....++.|+.|++||+|+.+-. .+...+|.||.+|+|.-.. ..-.|..|+.|+.|..
T Consensus 263 ~~~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 263 PSPGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILAR 328 (332)
T ss_dssp SSSEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEEE
T ss_pred CCCeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEee
Confidence 345566677889999999999999965 5678899999999986664 5668889999988753
No 122
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=87.48 E-value=0.4 Score=44.14 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=25.5
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+|+|.++++++|+.|+.||+|++|+.
T Consensus 20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~ 46 (108)
T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVET 46 (108)
T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEEC
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEEEc
Confidence 589999999999999999999999985
No 123
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.46 E-value=0.39 Score=43.34 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+|+|.++++++||.|+.||+|++|+.
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~ 46 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIET 46 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEEC
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEc
Confidence 589999999999999999999999985
No 124
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=87.39 E-value=0.25 Score=42.33 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=26.8
Q ss_pred cCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 899 SSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 899 Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
++.+|+|.++.+++|+.|+.||+|+.++.
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~ 40 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIET 40 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEEC
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 45799999999999999999999999975
No 125
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=86.91 E-value=0.72 Score=52.21 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=45.0
Q ss_pred eeeeeeecCCeecCCCeEEEEEec-ceeeeeecCCCEEEEEEee-cCCCcccCCCeEEEEee
Q psy2375 868 VSTVMVKIGDTIKIDQSLLVVESE-KVSMEIPSSHNGVVREIKV-KVGDKISKDSQILILEE 927 (929)
Q Consensus 868 V~~~~vk~Gd~V~~Gd~l~~iEt~-K~~~~I~Ap~~G~v~~i~~-~~G~~V~~G~~L~~i~~ 927 (929)
|.-..++.++-...=...+.|+.+ .-...|.++.+|+|.++.+ ++|+.|++||+|+.|+.
T Consensus 94 V~~~~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~ 155 (413)
T 3ne5_B 94 VKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (413)
T ss_dssp CCEEECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEEC
T ss_pred ceEEEEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcC
Confidence 333444444444444455667653 4568899999999999998 99999999999999984
No 126
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=86.30 E-value=0.56 Score=47.52 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=37.4
Q ss_pred eeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEe-----------------------------ecCCCcccCCC
Q psy2375 870 TVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK-----------------------------VKVGDKISKDS 920 (929)
Q Consensus 870 ~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~-----------------------------~~~G~~V~~G~ 920 (929)
..+|+.|+.|++||.||+=. +|-|..+|+|.+.. +++|+.|.+|+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~~Gd 95 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL 95 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEECTTS
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEcCCC
Confidence 56889999999999999653 78888888875433 66677777777
Q ss_pred eEE
Q psy2375 921 QIL 923 (929)
Q Consensus 921 ~L~ 923 (929)
+|+
T Consensus 96 vLA 98 (193)
T 2xha_A 96 PLS 98 (193)
T ss_dssp BSS
T ss_pred EEe
Confidence 764
No 127
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=86.00 E-value=0.69 Score=43.95 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=25.4
Q ss_pred CCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 901 HNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 901 ~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.+|+|.++.+++||.|+.||+|++|+.
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa 66 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIET 66 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEc
Confidence 579999999999999999999999985
No 128
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=85.74 E-value=0.39 Score=53.47 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred eEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 884 SLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 884 ~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+.|+.. -...|.++.+|+|.++.+++|+.|+.||+|+.|+.
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 34455654 35679999999999999999999999999999975
No 129
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=83.23 E-value=0.22 Score=42.95 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=25.9
Q ss_pred CCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 900 SHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 900 p~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..+|+|.++++++|+.|+.||+|+.++.
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 41 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIET 41 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCS
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEc
Confidence 4699999999999999999999999874
No 130
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=82.39 E-value=0.36 Score=53.38 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=41.9
Q ss_pred eecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 873 vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
++.|+--..=..-+.|+.. -...|.++.+|+|.++.+++|+.|++||+|+.|+.
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 3444444444455667754 35689999999999999999999999999999975
No 131
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=82.05 E-value=0.95 Score=54.71 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=31.7
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++.+++||.|++||+|++|+.
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEEC
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 4569999999999999999999999999999984
No 132
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=81.96 E-value=1.6 Score=43.73 Aligned_cols=43 Identities=9% Similarity=0.272 Sum_probs=36.5
Q ss_pred CCeEEEEEecceeeeeecCCCEEEEEE-----------------------------------eecCCCcccCCCeEEEEe
Q psy2375 882 DQSLLVVESEKVSMEIPSSHNGVVREI-----------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 882 Gd~l~~iEt~K~~~~I~Ap~~G~v~~i-----------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
|+.+++.=++ -.|.||++|+|..+ .+++||.|++||+|+.++
T Consensus 62 GdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 62 GDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp CEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred cCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 8888866543 37899999999887 889999999999999987
Q ss_pred e
Q psy2375 927 E 927 (929)
Q Consensus 927 ~ 927 (929)
.
T Consensus 139 ~ 139 (183)
T 3our_B 139 L 139 (183)
T ss_dssp H
T ss_pred H
Confidence 4
No 133
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=80.64 E-value=2.2 Score=41.93 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=41.5
Q ss_pred cccceeeeeeecCCeecCCCeEEEEEecceee-eeecCCCEEEEEEeecC
Q psy2375 864 SEVEVSTVMVKIGDTIKIDQSLLVVESEKVSM-EIPSSHNGVVREIKVKV 912 (929)
Q Consensus 864 ~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~-~I~Ap~~G~v~~i~~~~ 912 (929)
.+|..+-..+..|+.|.+|+.++-|.|-|=++ -++||++|+|.-+.-.+
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p 156 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIP 156 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEET
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecC
Confidence 45777788899999999999999999999765 49999999998765433
No 134
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=80.00 E-value=1.6 Score=37.12 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=23.4
Q ss_pred CEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 902 NGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 902 ~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
+ +|.++.+++|+.|+.||+|+.++.
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~ 37 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLES 37 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEEC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEc
Confidence 5 899999999999999999999985
No 135
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=78.13 E-value=1.7 Score=48.17 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=38.1
Q ss_pred eeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEe-----------------------------ecCCCcccCC
Q psy2375 869 STVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK-----------------------------VKVGDKISKD 919 (929)
Q Consensus 869 ~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~-----------------------------~~~G~~V~~G 919 (929)
...+++.|+.|++||.||+=. +|-|..+|+|.+.. +++|+.|.+|
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G 134 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQG 134 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTT
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccC
Confidence 467889999999999999754 67777777775432 6778888888
Q ss_pred CeEE
Q psy2375 920 SQIL 923 (929)
Q Consensus 920 ~~L~ 923 (929)
++|+
T Consensus 135 ~vla 138 (352)
T 2xhc_A 135 LPLS 138 (352)
T ss_dssp CBSB
T ss_pred cEEe
Confidence 8876
No 136
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=75.49 E-value=1.5 Score=53.12 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=31.2
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.+++|+.|+.||+|++|+.
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEES
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEec
Confidence 569999999999999999999999999999984
No 137
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=73.56 E-value=2.3 Score=54.72 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=31.1
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||..|+|.++.+++||.|+.||+|++|+.
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEe
Confidence 469999999999999999999999999999985
No 138
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=73.20 E-value=2.2 Score=54.49 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=31.2
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.|++||.|+.||+|++|+.
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEES
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 469999999999999999999999999999985
No 139
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=70.51 E-value=1.3 Score=44.74 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=36.0
Q ss_pred eecCCeecCCCeEEEEEecceeeeeecCCCEEEEE--------------------------E--eecCCCcccCCCeEEE
Q psy2375 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVRE--------------------------I--KVKVGDKISKDSQILI 924 (929)
Q Consensus 873 vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~--------------------------i--~~~~G~~V~~G~~L~~ 924 (929)
++.|+.|+.||+|+ -...|-|+.+|+|.= + .|++||.|.+|++|+.
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 67888999999887 235567778887641 3 8899999999999974
No 140
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=68.97 E-value=1 Score=54.46 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=0.0
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
...|.||.+|+|.++.+++||.|+.||+|++|+.
T Consensus 602 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 602 QGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp ----------------------------------
T ss_pred CCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3569999999999999999999999999999974
No 141
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=66.97 E-value=3.5 Score=52.83 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=28.1
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..|.||.+|+|.++.+++||.|+.||+|++|+.
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEc
Confidence 469999999999999999999999999999984
No 142
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=64.51 E-value=5.8 Score=40.10 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=38.0
Q ss_pred eeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcc
Q psy2375 869 STVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI 916 (929)
Q Consensus 869 ~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V 916 (929)
...+|+.|+.|++||.||+. |+-..+|-|..+|+|.=-.+.+|.++
T Consensus 62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~ 107 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 107 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence 35688999999999999865 78999999999999876666666443
No 143
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=55.33 E-value=38 Score=33.32 Aligned_cols=110 Identities=14% Similarity=0.220 Sum_probs=63.1
Q ss_pred EEEEEecCCCcccc--cc-cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcc-cchhc---c
Q psy2375 252 LIMIVNCNLQRLDG--PV-RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLD-GEYQN---Y 324 (929)
Q Consensus 252 li~vvn~N~~~idg--~v-~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~d-g~~q~---~ 324 (929)
+.+|||+-...-.. +. .|...-.+.|...|+..|+.|.... .-+...+.+.|.+... -+.+. +
T Consensus 35 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~----------dlt~~em~~~l~~~~~~~dh~~~dc~ 104 (167)
T 1pyo_A 35 LALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLC----------DQTAQEMQEKLQNFAQLPAHRVTDSC 104 (167)
T ss_dssp EEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEE----------SCCHHHHHHHHHHHHTCGGGGTSSEE
T ss_pred EEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEee----------CCCHHHHHHHHHHhhhhhhccCCCEE
Confidence 66667665543221 11 1212235789999999999986541 2255667777766654 22211 1
Q ss_pred ---ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC--cHHHHHHHHHHH--HhCCCCCeEEEEeeecccC
Q psy2375 325 ---RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH--DLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 325 ---~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh--D~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G 394 (929)
....|. ...++|. ||. ++++|...|... ....+||.++++..=+|.-
T Consensus 105 vv~ilSHG~--~g~i~g~---------------------D~~~v~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~ 158 (167)
T 1pyo_A 105 IVALLSHGV--EGAIYGV---------------------DGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQACRGDE 158 (167)
T ss_dssp EEEEESCEE--TTEEECT---------------------TSCEEEHHHHHHHTSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred EEEeCCCCC--CCeEEEe---------------------CCCEEcHHHHHHHhcccCChhHcCCCeEEEEECCCCCC
Confidence 111221 1234443 664 778888877532 2345899999999887754
No 144
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=55.19 E-value=81 Score=36.63 Aligned_cols=117 Identities=16% Similarity=0.031 Sum_probs=57.3
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||... | ..++ .++.+= ..-+.-=+-.+-..+.|-+.|.|....-..+.+-..||
T Consensus 43 ~~v~-~~~E~~Aa~~--A~--Gyar~t-g-~~v~~~TsGpG-~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~ 114 (566)
T 2vbi_A 43 KQIY-CCNELNCGFS--AE--GYARSN-G-AAAAVVTFSVG-AISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHH 114 (566)
T ss_dssp EEEE-CSSHHHHHHH--HH--HHHHHH-S-CEEEEECTTTT-HHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTT
T ss_pred eEEe-eCcHHHHHHH--HH--HHHhhc-C-CeEEEEeCCCC-HHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeee
Confidence 5665 5999997654 44 577653 3 3333 333331 11111112222234566666666555433333333455
Q ss_pred Ch------hhHHHHhcCCCc--EEEccCCHH-HHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DG------HSHVLASTIPNC--IPYDPTFAH-EVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~------ed~~l~r~iPnl--~v~~Pada~-E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
.+ ....+++.+-.. .+-.|.+.. .+..+++.++.. + .|||+-++..
T Consensus 115 ~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~---~-GPV~l~iP~d 169 (566)
T 2vbi_A 115 TIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRE---R-KPAYLDIACN 169 (566)
T ss_dssp SCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHH---T-CCEEEEEETT
T ss_pred eccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhC---C-CCEEEEechh
Confidence 32 346788877543 333344433 234444444443 3 3499988864
No 145
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=54.66 E-value=35 Score=40.09 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=65.9
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||... +...++ .+..+- ..-+.--+-.+-..+.|-++|.|....-..+ .| .+|
T Consensus 45 ~~i~-~~~E~~Aa~~--A~--GyAr~t-gk~~v~~~tsGpG-~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g-~~-~~Q 115 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMA--AV--MQSKFG-GNLGVTVGSGGPG-ASHLINGLYDAAMDNIPVVAILGSRPQRELN-MD-AFQ 115 (590)
T ss_dssp EEEE-CSSHHHHHHH--HH--HHHHTT-CCCCEEEECTTHH-HHTTHHHHHHHHHHTCCEEEEEEECCGGGTT-TT-CTT
T ss_pred eEEe-eCCHHHHHHH--HH--HHHHHH-CCCEEEEeCcChH-HHHHHHHHHHHHhcCCCEEEEcCCCCcccCC-CC-ccc
Confidence 4554 5899997654 44 577653 233333 333332 2222211222222355656665554432222 22 367
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
......+++.+-.. .+.+.++.++..+++.|++... ++..||++ ++..
T Consensus 116 ~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~d 164 (590)
T 1v5e_A 116 ELNQNPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGD 164 (590)
T ss_dssp CCCCHHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETT
T ss_pred ccCHHHHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccc
Confidence 67777888888655 6777888888888887775432 22246999 8864
No 146
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=50.02 E-value=12 Score=41.55 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=29.0
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..-|+||.+|.+ ...++.|+.|++||+|++|.+
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEEc
Confidence 345899999977 588999999999999999875
No 147
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=48.93 E-value=41 Score=36.80 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=37.7
Q ss_pred cEEEEE-EcCCccCCcccHHHHHHHHH---------cCCCeEEEEEecCCCcc-cccccccccchHHHHHHHhhC-CceE
Q psy2375 221 RKIWIL-CGDGEMDEPESISEISMAAR---------EKLDNLIMIVNCNLQRL-DGPVRGNSKIIQELEAHFYGV-GWNV 288 (929)
Q Consensus 221 ~~v~~~-~GDGe~~eg~~~eAl~~A~~---------~~L~nli~vvn~N~~~i-dg~v~~~~~~~~~l~~~f~~~-Gw~v 288 (929)
+.+|++ .+|.. -..++.+.+.+. .+++ +++++.. +..- +||+- .+.++..|+.. ||.|
T Consensus 87 rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~p-vv~~~~~-G~~g~~G~tH-----s~~~ea~l~~iP~l~V 156 (341)
T 2ozl_B 87 RPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVP-IVFRGPN-GASAGVAAQH-----SQCFAAWYGHCPGLKV 156 (341)
T ss_dssp EEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCC-CEEEEEC-SCCSSCCGGG-----CCCCHHHHHTSTTCEE
T ss_pred EEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCC-EEEEEcC-cCCCCCCcch-----hhHHHHHhccCCCCEE
Confidence 455553 88887 478898876543 7775 8888884 5322 44443 23334677775 8887
Q ss_pred EE
Q psy2375 289 IK 290 (929)
Q Consensus 289 i~ 290 (929)
+.
T Consensus 157 ~~ 158 (341)
T 2ozl_B 157 VS 158 (341)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 148
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=48.18 E-value=8.3 Score=37.67 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=38.0
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEE------EEEEeecCCCcccCCCeEEEE
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGV------VREIKVKVGDKISKDSQILIL 925 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~------v~~i~~~~G~~V~~G~~L~~i 925 (929)
.|.--+.+|+.||+|++||+|+++.-++....=.++..=+ +..+....+..|..|+.|+.+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn~~~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEECCCcceEEEccCceEcCCCEEEEe
Confidence 4567788999999999999999887433221111111111 112333346678889988875
No 149
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=47.98 E-value=52 Score=37.92 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=65.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc-CCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS-NCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~-G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||.. | ...+++.-+--|..-+..=+-.+-..+.|-+.|.|.......+.+..||.
T Consensus 40 ~~i~-~~~E~~Aa~~--A~--Gyar~tg--~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~ 112 (528)
T 1q6z_A 40 RYIL-ALQEACVVGI--AD--GYAQASR--KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTN 112 (528)
T ss_dssp EEEE-CSSHHHHHHH--HH--HHHHHHT--SCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTCC
T ss_pred cEEE-ECcHHHHHHH--HH--HHHHHhC--CCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccCCCccccc
Confidence 5554 4899987654 54 46664 4 44455444433333232222233334566666666555444455545552
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
+....+++.+... .+.+.++.++...++.|++... ++..|||+-++..
T Consensus 113 -~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 113 -VDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp -TTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred -ccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 3455667766543 4555566666666776665332 2223599988764
No 150
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=47.79 E-value=38 Score=33.77 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=61.4
Q ss_pred EEEEEecCCCccc--ccc-cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc-----
Q psy2375 252 LIMIVNCNLQRLD--GPV-RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN----- 323 (929)
Q Consensus 252 li~vvn~N~~~id--g~v-~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~----- 323 (929)
+.+|||+-...-. -+. .|..+-.+.|...|+..|+.|.... .-+...+.+.|.+...-+.+.
T Consensus 46 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~----------dlt~~em~~~l~~~~~~dh~~~dc~v 115 (179)
T 3p45_A 46 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN----------DLKAEELLLKIHEVSTVSHADADCFV 115 (179)
T ss_dssp EEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHTSCCTTBSCEE
T ss_pred EEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe----------CCCHHHHHHHHHHHhhhhcCCCCEEE
Confidence 6777777554321 111 2212335789999999999987642 236667777777765433321
Q ss_pred --cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC-cHHHHHHHHHHH--HhCCCCCeEEEEeeecccC
Q psy2375 324 --YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH-DLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 324 --~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh-D~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G 394 (929)
+.+ .|. ...++|. ||. .+++|...|... ....+||.|+++..=+|.-
T Consensus 116 vvilS-HG~--~g~I~g~---------------------D~~v~l~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~ 167 (179)
T 3p45_A 116 CVFLS-HGE--GNHIYAY---------------------DAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQ 167 (179)
T ss_dssp EEEES-CEE--TTEEECS---------------------SSEEEHHHHHGGGSGGGCGGGTTSCEEEEEECC----
T ss_pred EEEec-cCC--CCEEEEE---------------------CCEEEHHHHHHhcccccChhhCCCCcEEEEECCCCCC
Confidence 222 222 2455665 443 456666666432 2345899999999887743
No 151
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=46.37 E-value=13 Score=47.47 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=29.6
Q ss_pred eeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEE
Q psy2375 869 STVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVR 906 (929)
Q Consensus 869 ~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~ 906 (929)
...+|+.|+.|++||.|++- |--..+|-|..+|+|.
T Consensus 1001 s~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1001 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp CEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred CEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 35788999999999999876 5677788888888764
No 152
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=45.73 E-value=31 Score=33.11 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=62.5
Q ss_pred EEEEEecCCCcccc--c-ccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc-----
Q psy2375 252 LIMIVNCNLQRLDG--P-VRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN----- 323 (929)
Q Consensus 252 li~vvn~N~~~idg--~-v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~----- 323 (929)
+.+|||+-...-.. + -.|...-.+.|...|+..|+.|.... .-+...+.+.|.+...-+.+.
T Consensus 18 ~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~----------dlt~~em~~~l~~~~~~dh~~~dc~v 87 (146)
T 2dko_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN----------DLTREEIVELMRDVSKEDHSKRSSFV 87 (146)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHHSCCTTEEEEE
T ss_pred EEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEee----------CCCHHHHHHHHHHHHHhhcCCCCeEE
Confidence 66777765443220 1 12222235789999999999987642 225566667776655433221
Q ss_pred -cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHH--HHhCCCCCeEEEEeeecccCC
Q psy2375 324 -YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 324 -~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G~ 395 (929)
+....|. ...++|. || -.+++|...|.. .....+||.++++..=+|.-.
T Consensus 88 v~ilSHG~--~g~i~g~---------------------D~~~~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~ 140 (146)
T 2dko_A 88 CVLLSHGE--EGIIFGT---------------------NGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140 (146)
T ss_dssp EEEESCEE--TTEEEET---------------------TEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EEeccCCC--CCEEEEe---------------------CCcEeHHHHHHHhccccChhhcCCCeEEEEECCCCCCC
Confidence 1112232 2344554 33 346666666642 123458999999998877543
No 153
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=45.49 E-value=44 Score=36.33 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=38.6
Q ss_pred cEEEEE-EcCCccCCcccHHHHH-HHHHc--------CCCeEEEEEecCCCcccccccccccchHHHHHHHhhC-CceEE
Q psy2375 221 RKIWIL-CGDGEMDEPESISEIS-MAARE--------KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGV-GWNVI 289 (929)
Q Consensus 221 ~~v~~~-~GDGe~~eg~~~eAl~-~A~~~--------~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi 289 (929)
+.+|+. .+++. -..++.+. .++.. +++ +++++.. .-..|||+. ..++....|+.. ||.|+
T Consensus 77 rp~~~~t~~~F~---~~a~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~-~g~~~G~th----~s~~d~~~l~~iP~l~V~ 147 (338)
T 1qs0_B 77 RPVVEIQFADYF---YPASDQIVSEMARLRYRSAGEFIAP-LTLRMPC-GGGIYGGQT----HSQSPEAMFTQVCGLRTV 147 (338)
T ss_dssp EEEEECSCGGGC---GGGHHHHHTTTTTHHHHTTTSSCCC-CEEEEEE-CCSSSCCSS----SSCCCHHHHTTSTTCEEE
T ss_pred EEEEEeccHhHH---HHHHHHHHHHHHHHhhhcCCCCCCC-EEEEEeC-CCCCCCccc----ccccHHHHHhcCCCCEEE
Confidence 345544 88886 37889875 35533 475 7777753 335566553 234566788886 99876
Q ss_pred E
Q psy2375 290 K 290 (929)
Q Consensus 290 ~ 290 (929)
.
T Consensus 148 ~ 148 (338)
T 1qs0_B 148 M 148 (338)
T ss_dssp C
T ss_pred e
Confidence 5
No 154
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=45.02 E-value=37 Score=32.49 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=25.2
Q ss_pred cCCCCCCcH--HHHHHHHHHHHhCCCCCeEEEEeee
Q psy2375 357 NLTFGGHDL--RKIYSAFKMAQKNKDKPTVLLIKSI 390 (929)
Q Consensus 357 ~l~~dGhD~--~~v~~a~~~a~~~~~~P~vI~~~T~ 390 (929)
.++.|-.|+ +.+.++++.+.+..++|++|++...
T Consensus 72 ~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnnAgg 107 (157)
T 3gxh_A 72 YIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLAN 107 (157)
T ss_dssp ECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEECSBS
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 346677777 8898988888775466988887643
No 155
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=44.08 E-value=76 Score=31.43 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred EEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhccc----chhc---c
Q psy2375 252 LIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDG----EYQN---Y 324 (929)
Q Consensus 252 li~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg----~~q~---~ 324 (929)
+.+|||+..+.--.+-.|...-.+.|...|+..|+.|.... .-+...+.+.|.+...- .+.. +
T Consensus 45 ~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~----------dlt~~em~~~l~~f~~~~d~~~~d~~v~~ 114 (178)
T 2h54_A 45 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK----------NLTASDMTTELEAFAHRPEHKTSDSTFLV 114 (178)
T ss_dssp EEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHTCGGGGGCSCEEEE
T ss_pred EEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEec----------CCCHHHHHHHHHHHHhhhhcCCCCEEEEE
Confidence 56666665543111111211235779999999999987642 12555666666665331 1111 1
Q ss_pred ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCCcHHHHHHHHHHHH--hCCCCCeEEEEeeecccC
Q psy2375 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQ--KNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 325 ~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a~--~~~~~P~vI~~~T~KG~G 394 (929)
....|.- ..++|.+- .| ...++-+++.|...|.... ...+||.|+++..=+|.-
T Consensus 115 ~lsHG~~--g~i~g~D~---------~~-----~~~~~v~l~~I~~~f~~~~CpsL~gKPKlffiqACRg~~ 170 (178)
T 2h54_A 115 FMSHGIR--EGICGKKH---------SE-----QVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDS 170 (178)
T ss_dssp EESCBCS--SCEECTTC---------CS-----SSCCEECHHHHHHHHSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred EecCCCC--CeEEeecC---------Cc-----ccCcEEEHHHHHHHHhhcCChhhcCCceEEEEECCCCCC
Confidence 1222211 12334310 00 0001246777777776431 234899999999887743
No 156
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=43.65 E-value=76 Score=35.07 Aligned_cols=73 Identities=18% Similarity=0.006 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCcEEEEE-EcCCccCCcccHHHHHH-HHHc--------CCCeEEEEEecCCCccccc
Q psy2375 197 PLTAIHQARFLKYLHARKITNTINRKIWIL-CGDGEMDEPESISEISM-AARE--------KLDNLIMIVNCNLQRLDGP 266 (929)
Q Consensus 197 ~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~-~GDGe~~eg~~~eAl~~-A~~~--------~L~nli~vvn~N~~~idg~ 266 (929)
..+|.|+| +. | -+.+|++ .+|.. -..++.+.+ ++.. +++ +++++..-...-+|+
T Consensus 111 v~~a~G~A-----~~--G-----~rpv~~~tf~~Fl---~~a~Dqi~~~~a~~~~~~~g~~~~p-vv~~~~~gg~~g~g~ 174 (369)
T 1ik6_A 111 LGFAMGMA-----MA--G-----LKPVAEIQFVDFI---WLGADELLNHIAKLRYRSGGNYKAP-LVVRTPVGSGTRGGL 174 (369)
T ss_dssp HHHHHHHH-----HT--T-----CEEEEECCCC-------CCHHHHHHHHHHHHC------CCC-CEEEEEECC------
T ss_pred HHHHHHHH-----HC--C-----CeeEEEecchhHH---HHHHHHHHHHHHHHHHhhCCCCCCC-EEEEEeCCCCCCCCc
Confidence 34677777 32 1 2455654 88876 378998866 5544 876 777776544222333
Q ss_pred ccccccchHHHHHHHhhC-CceEEE
Q psy2375 267 VRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 267 v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
. ..+...+.|+.. ||.|+.
T Consensus 175 ~-----hs~~~~a~l~~iPnl~V~~ 194 (369)
T 1ik6_A 175 Y-----HSNSPEAIFVHTPGLVVVM 194 (369)
T ss_dssp ----------HHHHHHTCTTCEEEC
T ss_pred c-----ccccHHHHHcCCCCcEEEe
Confidence 2 233446778875 888765
No 157
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=43.46 E-value=5.9 Score=43.85 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=13.4
Q ss_pred eecCCCcccCCCeEEE
Q psy2375 909 KVKVGDKISKDSQILI 924 (929)
Q Consensus 909 ~~~~G~~V~~G~~L~~ 924 (929)
.+.+||.|++|++|+.
T Consensus 183 ~v~~Gd~V~~G~~l~d 198 (352)
T 2xhc_A 183 RIKKGKEVKQGEMLAE 198 (352)
T ss_dssp TSCTTCEECTTCEEEC
T ss_pred eeCCCCEEeCCCCccc
Confidence 4778999999999974
No 158
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=43.09 E-value=88 Score=36.35 Aligned_cols=120 Identities=17% Similarity=0.040 Sum_probs=58.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED 643 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~ 643 (929)
|++.+ ..|+++..+ |. |||... |.-.++.+..+= ..-+.-=+-.+-..+.|-+.|.|....-..+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~--A~--Gyar~t-g~~v~~~TsGpG-~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~ 115 (568)
T 2wvg_A 43 EQVYC-CNELNCGFS--AE--GYARAK-GAAAAVVTYSVG-ALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHA 115 (568)
T ss_dssp EEEEC-SSHHHHHHH--HH--HHHHHH-SCEEEEECTTTT-HHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTS
T ss_pred eEecc-CcHHHHHHH--HH--HHHHhh-CCeEEEEeCCCC-HHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeee
Confidence 66654 999997654 44 577553 322223333331 111211122222345666666665553333333344552
Q ss_pred h------hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 644 G------HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 644 ~------ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
. ....+++.+-.. .+.+.++.++...++.|++... ++ .|||+-++..
T Consensus 116 ~g~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~iP~d 169 (568)
T 2wvg_A 116 LGKTDYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREK-KPVYLEIACN 169 (568)
T ss_dssp CSSSCCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHT-CCEEEEEEGG
T ss_pred ccccchHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCC-CCEEEEechh
Confidence 2 346788877654 3333444444444544443211 13 3499988764
No 159
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=42.54 E-value=38 Score=36.75 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=60.4
Q ss_pred EEEEEecCCCcccccccc-cccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh-c------
Q psy2375 252 LIMIVNCNLQRLDGPVRG-NSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ-N------ 323 (929)
Q Consensus 252 li~vvn~N~~~idg~v~~-~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q-~------ 323 (929)
+.+|||+-.+.-.++.+. ...-.+.|...|+..|+.|.... .-+...+.+.|.+..+-+.+ .
T Consensus 63 ~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 63 VLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYG----------NVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp EEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEEC----------SCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred EEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEcc----------CCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 556665554442112222 11235779999999999987641 22556677777766543322 1
Q ss_pred cccCCchhhH--hhccCCChhHHHHHhhcCccccccCCCCCC--cHHHHHHHHHHH--HhCCCCCeEEEEeeecccC
Q psy2375 324 YRSKNSDFIR--KNFFGKHPKLLKMIEEMSDEDIWNLTFGGH--DLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 324 ~~~~~g~~~r--~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh--D~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G 394 (929)
+....|.-.. ..++| .||. ++++|...|... ....+||.|+++..=+|.-
T Consensus 133 ~ilSHG~~~~g~g~i~g---------------------~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~ 188 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEF---------------------RDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDE 188 (316)
T ss_dssp EEESCEECCTTCCEEEC---------------------TTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC----
T ss_pred EEccCCCccCCCCEEEe---------------------ecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCc
Confidence 1111221100 12233 3776 778888777632 2345899999999887743
No 160
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=42.52 E-value=17 Score=39.76 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.4
Q ss_pred eeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 894 ~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
..-|+||.+|.+ +-.++.|+.|++||+|++|..
T Consensus 257 ~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~d 289 (331)
T 3na6_A 257 DCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWS 289 (331)
T ss_dssp CCCEECSSCEEE-EESSCTTCEECTTCEEEEEEC
T ss_pred cEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEEc
Confidence 446899999966 557999999999999999875
No 161
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=41.06 E-value=1e+02 Score=35.69 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=66.0
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
=|++. ...|+++..+ |. |||... +...+++ +..+ |..-+.--+-.+-..+.|-+.|.|.......+ .| .|
T Consensus 42 i~~i~-~~~E~~Aa~~--A~--Gyar~t-g~p~v~~~TsGp-G~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~-~~-~~ 112 (563)
T 2uz1_A 42 VPIID-TRHEAAAGHA--AE--GYARAG-AKLGVALVTAGG-GFTNAVTPIANAWLDRTPVLFLTGSGALRDDE-TN-TL 112 (563)
T ss_dssp CCEEE-CSSHHHHHHH--HH--HHHHHH-TSCEEEEECTTH-HHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT-SC-CT
T ss_pred CcEEe-eCCHHHHHHH--HH--HHHHHh-CCCEEEEEccCc-cHHHHHHHHHHHHhcCCCEEEEeCCCCcccCC-ch-hh
Confidence 46665 4999997654 54 466542 1333433 3332 22222211222223456666666655433332 23 37
Q ss_pred CC-hhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 ED-GHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~-~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|. .....+++.+-.. .+...++.++..+++.|++... ++..|||+-++..
T Consensus 113 Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 113 QAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp TCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 77 7777888887654 4555667777777777775322 2223599888764
No 162
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=40.37 E-value=24 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=33.6
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+..|+|+.+- |- .++|+-..-...+.+- +.++.|++||.|+.||+|+.+-
T Consensus 54 ~~~G~V~~~~---------G~-~V~I~H~~g~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 54 AHAGTVRVLS---------RC-QVRVTHPSGWATNYYH----MDQIQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp SSSEEEEEEE---------TT-EEEEECTTSEEEEEES----EESCCCCTTCEECTTCEEEEEC
T ss_pred ccCEEEEEEC---------Ce-EEEEEECCcEEEEEEc----CCccccCCCCEEcCCCEEEeec
Confidence 6677777653 33 3455554433444444 3467899999999999999875
No 163
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=39.55 E-value=25 Score=40.01 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=30.2
Q ss_pred ecceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 890 SEKVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 890 t~K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
.-|...+|.||.+|+|..| +++.||.|+.|++|++|-
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~ 398 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIH 398 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEE
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEE
Confidence 3456677888888888665 788899999999999984
No 164
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=39.47 E-value=1e+02 Score=35.93 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=67.8
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc-CCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS-NCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~-G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||.. | ...+++.-+-=|..-+.--+-.+-..+.|-++|.|....-..+ .| .+|
T Consensus 52 ~~i~-~~~E~~Aa~~--A~--Gyar~tg--~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g-~~-~~Q 122 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFA--AE--GYARSSG--KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIG-TD-AFQ 122 (590)
T ss_dssp EECC-CSSHHHHHHH--HH--HHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT-TT-CTT
T ss_pred cEEe-eCCHHHHHHH--HH--HHHHHHC--CCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccC-CC-ccc
Confidence 5554 4899997654 44 46654 4 3334433332222222221222333456666666655433333 33 367
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
......+++.+-.. .+...++.++..+++.|++... ++..|||+-++..
T Consensus 123 ~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 123 ETPIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp CCCHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccCHHHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 77777888888765 5566777888889998886532 2223599888753
No 165
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=39.34 E-value=23 Score=40.06 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=28.8
Q ss_pred cceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 891 EKVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 891 ~K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
-| ..+|.||.+|+|..| +++.||.|+.|++|++|-
T Consensus 325 a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 325 AE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp CE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEE
Confidence 45 667888888888665 788899999999999984
No 166
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=39.30 E-value=27 Score=35.01 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=39.9
Q ss_pred ChhHHHHH-HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHH
Q psy2375 734 GAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAE 812 (929)
Q Consensus 734 G~~v~~al-AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~ 812 (929)
|+.-.... ++..+.++ +++++++|+..+-.++.+. . .. .|.+ -..+.+ .+...++-||+.=+|..+++.
T Consensus 15 ~S~~~~la~~~~~~~~~-~~~~~~idl~dLP~~~~d~-~----~~-~p~~--~~~l~~-~i~~aD~~ii~tPeYn~s~pg 84 (190)
T 3u7r_A 15 DSLNHKLMKVLQKLAEG-RLEFHLLHIGDLPHYNDDL-W----AD-APES--VLRLKD-RIEHSDAVLAITPEYNRSYPG 84 (190)
T ss_dssp TCHHHHHHHHHHHHHTT-TEEEEECCGGGSCCCCGGG-G----GG-CCHH--HHHHHH-HHHTSSEEEEECCCBTTBCCH
T ss_pred CCHHHHHHHHHHHhccC-CCEEEEEecccCCCCCCCc-c----cC-CCHH--HHHHHH-HHHhCCcEEEechhhcccCCH
Confidence 34444434 44445555 8899999988764444432 1 11 1211 123433 444554666666689887776
Q ss_pred HHHhh
Q psy2375 813 QVRAF 817 (929)
Q Consensus 813 ~i~~~ 817 (929)
.+..+
T Consensus 85 ~LKn~ 89 (190)
T 3u7r_A 85 MIKNA 89 (190)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 167
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=39.27 E-value=18 Score=39.80 Aligned_cols=49 Identities=2% Similarity=-0.074 Sum_probs=39.0
Q ss_pred eeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 871 ~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
..++.|+.|++||+|+.+- + .+|.||.+|.+.- .. .-.|..|+.++.+-
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~ 327 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMV 327 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEE
Confidence 3458999999999999884 3 6899999997643 33 67899999887764
No 168
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=38.98 E-value=1.5e+02 Score=34.32 Aligned_cols=119 Identities=8% Similarity=-0.025 Sum_probs=61.5
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ ..|+++..+ | .|||... +...++ .++.+ |..-+.--+-.+-..+.|-++|.|....-..+. | .+|
T Consensus 43 ~~i~~-~~E~~Aa~~--A--~GyAr~t-g~~~v~~~TsGp-G~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~~-~-~~Q 113 (549)
T 3eya_A 43 EWMST-RHEEVAAFA--A--GAEAQLS-GELAVCAGSCGP-GNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS-G-YFQ 113 (549)
T ss_dssp EEEEC-SSHHHHHHH--H--HHHHHHH-SSCEEEEECTTH-HHHTTHHHHHHHHHTTCCEEEEEEESCGGGTTS-C-CTT
T ss_pred eEEEe-CChHHHHHH--H--HHHHHHh-CCCEEEEeCCCC-cHhhhHHHHHHHHhhCCCEEEEeCCCchhhcCC-C-CCC
Confidence 66654 899996654 4 4577542 133333 34333 222222112222234566666666554333332 2 356
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
......+++.+-.. .+...++.++...++.|++.......|||+-++..
T Consensus 114 ~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 114 ETHPQELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp CCCHHHHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred ccCHHHHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 66677888877653 34445555666666666543222224599888753
No 169
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=38.87 E-value=89 Score=36.96 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=40.0
Q ss_pred cEEEEEEcCCccCCcccHHH-HHHHHHcCCCeEEEEEecCCCc-ccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 221 RKIWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQR-LDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eA-l~~A~~~~L~nli~vvn~N~~~-idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
+.+++..++... ..++. ++.++..+++ +++++..-+.. -+||+-. -+++ ...|+.. ||.|+.
T Consensus 386 rp~~~~~~~F~~---~a~dqi~~~~a~~~~p-vv~~~~~~g~~g~~G~tH~---~~~d-~~~~~~iP~l~v~~ 450 (621)
T 2o1s_A 386 KPIVAIYSTFLQ---RAYDQVLHDVAIQKLP-VLFAIDRAGIVGADGQTHQ---GAFD-LSYLRCIPEMVIMT 450 (621)
T ss_dssp EEEEEEETTGGG---GGHHHHHHTTTTTTCC-CEEEEESCBCCCTTCGGGC---BCSH-HHHTTTSTTCEEEC
T ss_pred EEEEEehHhHHH---HHHHHHHHHHHhcCCC-EEEEEECCccCCCCCCccC---chHH-HHHHhcCCCCEEEe
Confidence 567888888752 66765 5778999987 88888665542 2555432 1233 2466775 998765
No 170
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=38.79 E-value=26 Score=39.85 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=28.1
Q ss_pred ceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 892 KVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 892 K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
+...+|.||.+|+|..| +++.||.|+.|++|++|-
T Consensus 336 ~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 336 QYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp SEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 45667777777777666 778999999999999984
No 171
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=38.70 E-value=54 Score=34.70 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=53.5
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh-------ccccCCchhhHhhccCCChhHHHH
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ-------NYRSKNSDFIRKNFFGKHPKLLKM 346 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q-------~~~~~~g~~~r~~~fg~~~~~~~~ 346 (929)
.+.|...|+..|+.|.... .-+...+.+.|.+...-+.+ .+.+ .|. ...++|.
T Consensus 51 ~~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~~~~~~h~~~d~~v~~ilS-HG~--~g~i~g~------- 110 (271)
T 3h11_B 51 AGALTTTFEELHFEIKPHD----------DCTVEQIYEILKIYQLMDHSNMDCFICCILS-HGD--KGIIYGT------- 110 (271)
T ss_dssp HHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHHSCCTTCSCEEEEEES-CEE--TTEEECT-------
T ss_pred HHHHHHHHHHCCCEEEEEe----------CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEc-CCc--CCEEEec-------
Confidence 5789999999999987652 22555666666655442221 1112 222 1234443
Q ss_pred HhhcCccccccCCCCCC--cHHHHHHHHHHH--HhCCCCCeEEEEeeecccCC
Q psy2375 347 IEEMSDEDIWNLTFGGH--DLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 347 v~~~~d~~i~~l~~dGh--D~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G~ 395 (929)
||. ++++|...|... ....+||.|+++..=+|--.
T Consensus 111 --------------D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 149 (271)
T 3h11_B 111 --------------DGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNY 149 (271)
T ss_dssp --------------TSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred --------------CCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcc
Confidence 554 567777766531 22358999999999887543
No 172
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=37.79 E-value=1.5e+02 Score=34.43 Aligned_cols=120 Identities=10% Similarity=0.016 Sum_probs=65.8
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||... +...++ .+..+ |..-+..-+-.+-..+.|-++|.|....-..+ .+..||
T Consensus 50 ~~i~-~~~E~~Aa~~--A~--Gyar~t-g~p~v~~~TsGp-G~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~-~~~~~Q 121 (573)
T 2iht_A 50 DFVL-TRHEFTAGVA--AD--VLARIT-GRPQACWATLGP-GMTNLSTGIATSVLDRSPVIALAAQSESHDIF-PNDTHQ 121 (573)
T ss_dssp EEEE-CSSHHHHHHH--HH--HHHHHH-CSCEEEEECTTH-HHHHHHHHHHHHHHHTCCEEEEEEESCGGGCC-TTTSTT
T ss_pred eEEe-eCCHHHHHHH--HH--HHHHHH-CCCEEEEEccCc-hHHHHHHHHHHHHhhCCCEEEEcccCcccccC-CcCccc
Confidence 5554 4899986654 44 566542 133333 34333 22222221222323456666665555433232 213588
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
......+++.+... .+...++.++...++.|++... ++..|||+-++..
T Consensus 122 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 122 CLDSVAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp CCCHHHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred cCCHHHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 88888899888754 3455566667777777775432 3323599988754
No 173
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=36.72 E-value=1.2e+02 Score=35.15 Aligned_cols=118 Identities=13% Similarity=0.064 Sum_probs=62.1
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc-CCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS-NCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~-G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
|++.+ ..|+++..+ |. |||.. | ...++ .+..+ |..-+.--+-.+-..+.|-+.|.|....-..+. ..|
T Consensus 50 ~~v~~-~~E~~Aa~~--A~--Gyar~tg--~p~v~~~TsGp-G~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~--~~~ 119 (566)
T 1ozh_A 50 RIIPV-RHEANAAFM--AA--AVGRITG--KAGVALVTSGP-GCSNLITGMATANSEGDPVVALGGAVKRADKAK--QVH 119 (566)
T ss_dssp EEEEC-SSHHHHHHH--HH--HHHHHHS--SCEEEEECSTH-HHHTTHHHHHHHHHHTCCEEEEEEECCTTTC-------
T ss_pred cEEEe-CCHHHHHHH--HH--HHHHHHC--CCEEEEEccCh-HHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC--Ccc
Confidence 56654 999996654 44 46653 4 33333 34333 222222112222223566666655554332322 247
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhc-cCCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCM-ISNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~-~g~~~~v~~rl~~~ 692 (929)
|......+++.+... .+...++.++...++.|++.. .++..|||+-++..
T Consensus 120 Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 120 QSMDTVAMFSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp -CCCHHHHHGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccCHHHHHHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 777778888888654 445566677777777776532 23334599888754
No 174
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=35.98 E-value=49 Score=35.02 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=61.3
Q ss_pred EEEEEecCCCccc--ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh------c
Q psy2375 252 LIMIVNCNLQRLD--GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ------N 323 (929)
Q Consensus 252 li~vvn~N~~~id--g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q------~ 323 (929)
+.+|||+..+.-. .+-.|...-.+.|...|+..|+.|.... .-+...+.+.|.+..+-+.+ .
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~~~~~dh~~~d~~v~ 103 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP----------NLKSEEINKFIQQTAEMDHSDADCLLV 103 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEec----------CcCHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 6666666555421 1111111235779999999999987652 22556677777666543211 1
Q ss_pred cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHH--HHhCCCCCeEEEEeeecccCC
Q psy2375 324 YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 324 ~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G~ 395 (929)
+....|. ...++|. || -+++.|...|.. .....+||.++++..=+|.-.
T Consensus 104 ~~lsHG~--~~~i~~~---------------------D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~~ 155 (272)
T 1m72_A 104 AVLTHGE--LGMLYAK---------------------DTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRL 155 (272)
T ss_dssp EEESCEE--TTEEECS---------------------SSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBC
T ss_pred EEcCCCC--CCEEEec---------------------CCcEEHHHHHHHhccccChhhcCCceEEEEeCCCCCcc
Confidence 1122332 3344554 33 244556665542 123458999999998877543
No 175
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=34.57 E-value=80 Score=33.47 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=60.5
Q ss_pred EEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhccc-chhcc------
Q psy2375 252 LIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDG-EYQNY------ 324 (929)
Q Consensus 252 li~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg-~~q~~------ 324 (929)
+.+|+|+-+ .-.+.|...|+..|+.|.... .-+...+.+.|.+.... +.+.+
T Consensus 45 ~~LIinn~~-----------~D~~~L~~~f~~LgF~V~~~~----------dlt~~em~~~l~~~~~~~dh~~~d~~v~~ 103 (272)
T 3h11_A 45 ICLIIDCIG-----------NETELLRDTFTSLGYEVQKFL----------HLSMHGISQILGQFACMPEHRDYDSFVCV 103 (272)
T ss_dssp EEEEEESSC-----------CCCSHHHHHHHHHTEEEEEEE----------SCBHHHHHHHHHHHHTCGGGGGCSEEEEE
T ss_pred EEEEECCch-----------HHHHHHHHHHHHCCCEEEEee----------CCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 777777621 235679999999999987642 22556677777765442 22111
Q ss_pred ccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC----cHHHHHHHHHHH--HhCCCCCeEEEEeeecccC
Q psy2375 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH----DLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 325 ~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh----D~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G 394 (929)
....|. ...++|. ||. ++++|...|... ....+||.++++..=+|.+
T Consensus 104 ilSHG~--~g~i~g~---------------------D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~ 156 (272)
T 3h11_A 104 LVSRGG--SQSVYGV---------------------DQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSE 156 (272)
T ss_dssp EEEEEE--TTEECBT---------------------SCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEEC--
T ss_pred EEcCCC--CCeEEEE---------------------cCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCCCCC
Confidence 111221 2344454 554 688888888642 3346999999999988854
No 176
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=34.51 E-value=1.9e+02 Score=33.22 Aligned_cols=119 Identities=13% Similarity=0.005 Sum_probs=56.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED 643 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~ 643 (929)
+++ ....|+++..+ |. |||... + .++++.-+--+..-+.--+-.+-..+.|-++|.|.......+.+-..||.
T Consensus 45 ~~i-~~~~E~~A~~~--A~--Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~ 117 (552)
T 1ovm_A 45 CWV-GCANELNASYA--AD--GYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHT 117 (552)
T ss_dssp EEE-ECSSHHHHHHH--HH--HHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTS
T ss_pred eEE-eeCcHHHHHHH--HH--HHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccc
Confidence 444 45999997654 54 466554 3 34443333222222221122222345666666665443223333333332
Q ss_pred h------hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 644 G------HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 644 ~------ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
. +...+++.+-......+. .++..+++.+++... +++ |||+-++..
T Consensus 118 ~g~~~~q~~~~~~~~~tk~~~~v~~--~~~~~~i~~A~~~a~~~~G-PV~l~iP~d 170 (552)
T 1ovm_A 118 LGDGEFRHFYHMSEPITVAQAVLTE--QNACYEIDRVLTTMLRERR-PGYLMLPAD 170 (552)
T ss_dssp CSSSCCSHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHHTC-CEEEEEEHH
T ss_pred cCCCcHHHHHHHHHhheeEEEEEcc--ccHHHHHHHHHHHHHhCCC-CEEEEeehh
Confidence 2 234577776655444443 445555554443221 133 499888753
No 177
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=34.50 E-value=87 Score=34.09 Aligned_cols=74 Identities=20% Similarity=0.114 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCcEEEEE-EcCCccCCcccHHHHH-HHHHcCC--------CeEEEEEecCCCccccc
Q psy2375 197 PLTAIHQARFLKYLHARKITNTINRKIWIL-CGDGEMDEPESISEIS-MAAREKL--------DNLIMIVNCNLQRLDGP 266 (929)
Q Consensus 197 ~~~Aig~A~a~kyl~~r~~~~~~~~~v~~~-~GDGe~~eg~~~eAl~-~A~~~~L--------~nli~vvn~N~~~idg~ 266 (929)
..+|+|+| ++ | -+.+|+. .+++.. ..++.+. .++.+++ .++++++..=+ ..+||
T Consensus 80 v~~a~G~A-----~~--G-----~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~~~G~ 143 (342)
T 2bfd_B 80 VGFGIGIA-----VT--G-----ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VGHGA 143 (342)
T ss_dssp HHHHHHHH-----HT--T-----CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CSSCG
T ss_pred HHHHHHHH-----HC--C-----CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-CCCCc
Confidence 44677777 32 1 2456654 888843 7888875 4554333 14888877543 24665
Q ss_pred ccccccchHHHHHHHhhC-CceEEE
Q psy2375 267 VRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 267 v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
+.- .++..+.|+.. ||.|+.
T Consensus 144 th~----~~~d~~~l~~iP~l~V~~ 164 (342)
T 2bfd_B 144 LYH----SQSPEAFFAHCPGIKVVI 164 (342)
T ss_dssp GGS----SCCCHHHHHTSTTCEEEC
T ss_pred chh----hHhHHHHHhcCCCcEEEe
Confidence 532 34555778886 888765
No 178
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=34.16 E-value=54 Score=34.88 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=54.1
Q ss_pred chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc------cccCCchhhHhhccCCChhHHHH
Q psy2375 273 IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN------YRSKNSDFIRKNFFGKHPKLLKM 346 (929)
Q Consensus 273 ~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~------~~~~~g~~~r~~~fg~~~~~~~~ 346 (929)
-.+.|...|+..|+.|.... .-+...+.+.|.+...-+... +....|.. ..++|.|
T Consensus 70 D~~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~f~~~dh~~~d~~vv~ilSHG~~--g~i~g~D------ 131 (277)
T 4ehd_A 70 DAANLRETFRNLKYEVRNKN----------DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEE--GIIFGTN------ 131 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETT------
T ss_pred HHHHHHHHHHHCCCEEEEec----------CCCHHHHHHHHHHHHhhcccCCCEEEEEEEcCCCC--CEEEEeC------
Confidence 35779999999999987652 225566777776665432221 11222321 3445542
Q ss_pred HhhcCccccccCCCCCCcHHHHHHHHHHH--HhCCCCCeEEEEeeecccCC
Q psy2375 347 IEEMSDEDIWNLTFGGHDLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 347 v~~~~d~~i~~l~~dGhD~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G~ 395 (929)
++-+++.|...|... ....+||.|+++..=+|--.
T Consensus 132 --------------~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 168 (277)
T 4ehd_A 132 --------------GPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 168 (277)
T ss_dssp --------------EEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred --------------CcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcc
Confidence 223566676666532 23358999999999887543
No 179
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=33.50 E-value=24 Score=40.16 Aligned_cols=36 Identities=14% Similarity=0.423 Sum_probs=30.2
Q ss_pred cceeeeeecCCCEEEEEE-------------------------------eecCCCcccCCCeEEEEe
Q psy2375 891 EKVSMEIPSSHNGVVREI-------------------------------KVKVGDKISKDSQILILE 926 (929)
Q Consensus 891 ~K~~~~I~Ap~~G~v~~i-------------------------------~~~~G~~V~~G~~L~~i~ 926 (929)
-|...+|.||.+|+|..| +++.||.|+.|++|++|-
T Consensus 337 a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 403 (440)
T 2tpt_A 337 AMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIH 403 (440)
T ss_dssp CSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEE
T ss_pred CCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEe
Confidence 456677888888888776 788899999999999984
No 180
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=33.00 E-value=83 Score=33.91 Aligned_cols=61 Identities=16% Similarity=0.026 Sum_probs=36.0
Q ss_pred cEEEEE-EcCCccCCcccHHHHHH-HHH--------cCCCeEEEEEecCCCcccccccccccchHHHHHHHhhC-CceEE
Q psy2375 221 RKIWIL-CGDGEMDEPESISEISM-AAR--------EKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGV-GWNVI 289 (929)
Q Consensus 221 ~~v~~~-~GDGe~~eg~~~eAl~~-A~~--------~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi 289 (929)
+.++++ .+++. -..++.+.+ ++. .+++ ++++++ .....+++. ...++..+.|+.. ||.|+
T Consensus 75 rp~~~~t~~~F~---~~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~g~~~~~g~----~hs~~~~a~~~~iP~l~V~ 145 (324)
T 1w85_B 75 RPVPEIQFFGFV---YEVMDSICGQMARIRYRTGGRYHMP-ITIRSP-FGGGVHTPE----LHSDSLEGLVAQQPGLKVV 145 (324)
T ss_dssp EEEEBCSSGGGG---GGTHHHHHTTGGGHHHHTTTSSCCC-CEEEEE-ECSSSCCCT----TSSCCCHHHHTTSTTCEEE
T ss_pred EEEEEecchhHH---HHHHHHHHHHHHHHhhhccCCCcCC-EEEEEe-ccCCCCCCC----cccccHHHHHccCCCCEEE
Confidence 345544 88886 378888864 444 6776 888876 343333221 1223444778875 88776
Q ss_pred E
Q psy2375 290 K 290 (929)
Q Consensus 290 ~ 290 (929)
.
T Consensus 146 ~ 146 (324)
T 1w85_B 146 I 146 (324)
T ss_dssp C
T ss_pred e
Confidence 5
No 181
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=31.74 E-value=61 Score=33.79 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=52.8
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh------ccccCCchhhHhhccCCChhHHHHH
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ------NYRSKNSDFIRKNFFGKHPKLLKMI 347 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q------~~~~~~g~~~r~~~fg~~~~~~~~v 347 (929)
.+.|...|+..|+.|.... .-+...+++.|.+..+-+.+ .+....|. ....+|.|
T Consensus 43 ~~~l~~~f~~LgF~V~~~~----------dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D------- 103 (250)
T 2j32_A 43 AANLRETFRNLKYEVRNKN----------DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTN------- 103 (250)
T ss_dssp HHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETT-------
T ss_pred HHHHHHHHHHCCCEEEEEe----------CCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecC-------
Confidence 5789999999999987652 12555666666665543211 11122332 22333431
Q ss_pred hhcCccccccCCCCCCcHHHHHHHHHHH--HhCCCCCeEEEEeeecccCC
Q psy2375 348 EEMSDEDIWNLTFGGHDLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 348 ~~~~d~~i~~l~~dGhD~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G~ 395 (929)
++-++++|...|... ....+||.++++..=+|.-.
T Consensus 104 -------------~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~ 140 (250)
T 2j32_A 104 -------------GPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140 (250)
T ss_dssp -------------EEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEEC
T ss_pred -------------CcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcc
Confidence 123566676666531 22358999999998877543
No 182
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=31.30 E-value=75 Score=31.03 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=54.3
Q ss_pred chHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc-------cccCCchhhHhhccCCChhHHH
Q psy2375 273 IIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN-------YRSKNSDFIRKNFFGKHPKLLK 345 (929)
Q Consensus 273 ~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~-------~~~~~g~~~r~~~fg~~~~~~~ 345 (929)
-.+.|...|+..|+.|.... .-+...+.+.|.+...-+.+. +.+ .|. ...++|.
T Consensus 56 D~~~L~~~f~~LgF~V~~~~----------dlt~~em~~~l~~~~~~dh~~~dc~vv~ilS-HG~--~g~i~g~------ 116 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPHD----------DCTVEQIYEILKIYQLMDHSNMDCFICCILS-HGD--KGIIYGT------ 116 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHHSCCTTCSCEEEEEES-CEE--TTEEECT------
T ss_pred HHHHHHHHHHHCCCEEEEec----------CCCHHHHHHHHHHHHHhhccCCCEEEEEeCC-CCC--CCEEEee------
Confidence 35789999999999986541 225566777777664432111 112 221 2344444
Q ss_pred HHhhcCccccccCCCCCC--cHHHHHHHHHH--HHhCCCCCeEEEEeeecccC
Q psy2375 346 MIEEMSDEDIWNLTFGGH--DLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 346 ~v~~~~d~~i~~l~~dGh--D~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G 394 (929)
||. .+++|...|.. .....+||.++++..=+|.-
T Consensus 117 ---------------D~~~v~i~~i~~~F~~~~CpsL~gKPKlFfiQACRG~~ 154 (164)
T 1qtn_A 117 ---------------DGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDN 154 (164)
T ss_dssp ---------------TSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred ---------------CCCEeeHHHHHHHhccccChhhcCCCeEEEEECCCCCC
Confidence 664 67777777753 22345899999999887743
No 183
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=30.68 E-value=1.3e+02 Score=32.19 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=36.4
Q ss_pred cEEEEE-EcCCccCCcccHHHHHH-HHH--------cCCCeEEEEEecCCCcccccccccccchHHHHHHHhhC-CceEE
Q psy2375 221 RKIWIL-CGDGEMDEPESISEISM-AAR--------EKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGV-GWNVI 289 (929)
Q Consensus 221 ~~v~~~-~GDGe~~eg~~~eAl~~-A~~--------~~L~nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi 289 (929)
+.++++ .++.. -..++.+.+ ++. .+++ +++++.. ....+++. ...++..+.|+.. ||.|+
T Consensus 76 ~p~~~~t~~~F~---~~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~-g~~~~~g~----~hs~~~~a~~~~iP~~~V~ 146 (324)
T 1umd_B 76 RPVAEIQFADYI---FPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPS-GGGVRGGH----HHSQSPEAHFVHTAGLKVV 146 (324)
T ss_dssp EEEEECSSGGGC---GGGHHHHHHTTTTHHHHTTTSSCCC-CEEEEEE-CSSSSCGG----GSSCCCHHHHHTSTTCEEE
T ss_pred EEEEEeccHhHH---HHHHHHHHHHHHHHHhhcCCCCcCC-EEEEEcC-CCCCCCCC----ccchhHHHHHhcCCCCEEE
Confidence 445554 88885 378888854 443 5776 8877763 43332221 2233445778875 88876
Q ss_pred E
Q psy2375 290 K 290 (929)
Q Consensus 290 ~ 290 (929)
.
T Consensus 147 ~ 147 (324)
T 1umd_B 147 A 147 (324)
T ss_dssp E
T ss_pred E
Confidence 6
No 184
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=30.63 E-value=1.5e+02 Score=29.03 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=46.7
Q ss_pred ChhHHHHH-HHHH-HhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhH
Q psy2375 734 GAILREIL-ASKI-LLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFA 811 (929)
Q Consensus 734 G~~v~~al-AAe~-L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~ 811 (929)
|..-..+- +++. |++. |++++++++..+...+ ...| .+....-..+..++. ..+.-|++.-.|+.+++
T Consensus 16 g~t~~la~~i~~~~l~~~-g~~v~~~dl~~~~~~~--~~~~------~~~~~~~~~~~~~i~-~aD~ii~~sP~y~~~~p 85 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARS-DSQGRHIHVIDLDPKA--LLRG------DLSNAKLKEAVDATC-NADGLIVATPIYKASYT 85 (197)
T ss_dssp CHHHHHHHHHHHHHHHHS-SEEEEEEEGGGSCHHH--HHHT------CTTSHHHHHHHHHHH-HCSEEEEEEECBTTBCC
T ss_pred ChHHHHHHHHHHHHHHHC-CCeEEEEEccccCchh--hccc------ccCcHHHHHHHHHHH-HCCEEEEEeCccCCCCC
Confidence 33334444 6777 8776 8999999987654321 1111 111111223334443 44355666667877778
Q ss_pred HHHHhhccC-------CCcEEEEec
Q psy2375 812 EQVRAFIPK-------GRIYKVLGT 829 (929)
Q Consensus 812 ~~i~~~l~~-------~~~~~~lG~ 829 (929)
..+..|+.. +.++..+++
T Consensus 86 ~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 86 GLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred HHHHHHHHhccccccCCCEEEEEEE
Confidence 777666542 234555666
No 185
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=30.60 E-value=43 Score=38.44 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=28.8
Q ss_pred cceeeeeecCCCEEEE-----------------------------EEeecCCCcccCCCeEEEEe
Q psy2375 891 EKVSMEIPSSHNGVVR-----------------------------EIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 891 ~K~~~~I~Ap~~G~v~-----------------------------~i~~~~G~~V~~G~~L~~i~ 926 (929)
-|...+|.|+.+|+|. .+.++.||.|+.|++|++|-
T Consensus 369 a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~ 433 (474)
T 1uou_A 369 AREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVH 433 (474)
T ss_dssp CSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEE
T ss_pred CCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEE
Confidence 4556677788888774 45788899999999999984
No 186
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=30.31 E-value=84 Score=33.32 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=61.4
Q ss_pred EEEEEecCCCccc--ccc-cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh------
Q psy2375 252 LIMIVNCNLQRLD--GPV-RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ------ 322 (929)
Q Consensus 252 li~vvn~N~~~id--g~v-~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q------ 322 (929)
+.+|||+-.+.-+ -+. .|...-.+.|...|+..|+.|.... .-+...+.+.|.+...-+.+
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~~~~~~h~~~d~~v 92 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN----------DLKAEELLLKIHEVSTVSHADADCFV 92 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHHSCCTTBSCEE
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec----------CCCHHHHHHHHHHHHhhcccCCCEEE
Confidence 6677776555421 111 1211235789999999999987652 22555666666665432222
Q ss_pred -ccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC-cHHHHHHHHHHH--HhCCCCCeEEEEeeecccCC
Q psy2375 323 -NYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH-DLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 323 -~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh-D~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G~ 395 (929)
.+.+ .|. ...++|. ||. .+++|...|... ....+||.|+++..=+|--.
T Consensus 93 v~ilS-HG~--~g~i~g~---------------------D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 145 (278)
T 3od5_A 93 CVFLS-HGE--GNHIYAY---------------------DAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQH 145 (278)
T ss_dssp EEEES-CEE--TTEEECS---------------------SSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EEEEC-CCC--CCEEEEe---------------------CCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcc
Confidence 1222 232 1344554 443 455666655421 22358999999998887543
No 187
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=29.85 E-value=3.9e+02 Score=31.19 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=64.2
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc-CCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS-NCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQH 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~-G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tH 641 (929)
|++. ...|+++..+ |.| ||.. | +...++ .++.+= ..-+..-+-.+-..+.|-++|.|.......+. | .+
T Consensus 67 ~~i~-~~~E~~Aa~~--A~G--yAr~tg-g~~~v~~~TsGpG-~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~~-~-~~ 137 (616)
T 2pan_A 67 RHIL-ARHVEGASHM--AEG--YTRATA-GNIGVCLGTSGPA-GTDMITALYSASADSIPILCITGQAPRARLHK-E-DF 137 (616)
T ss_dssp EEEE-CSSHHHHHHH--HHH--HHHHST-TCCEEEEECSTHH-HHTSHHHHHHHHHTTCCEEEEEEECCGGGTTT-T-CT
T ss_pred cEEe-eCCHHHHHHH--HHH--HHHhcC-CCceEEEeCCCch-HHHHHHHHHHHHhcCCCEEEEecCCcccccCc-c-cc
Confidence 5554 5999997654 544 6654 2 133333 344431 22222222222233566666666554333332 2 25
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEec
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITV 691 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~ 691 (929)
|......+++.+-... +...++.++..+++.|++... ++..||++-++.
T Consensus 138 Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 138 QAVDIEAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp TCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred cccCHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 5566667888776553 455667888888888886432 222358888765
No 188
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=29.81 E-value=44 Score=36.69 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=28.2
Q ss_pred eeeeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 893 VSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 893 ~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
-..-++||.+|. .+..++.|+.|++||+|+.|..
T Consensus 266 ~~~~v~A~~~G~-~~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 266 ADAYVMAPRTGL-FEPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp GGGEEECSSCEE-EEESCCTTCEECTTSEEEEEEC
T ss_pred CcEEEECCCCEE-EEEeCCCCCEeCCCCEEEEEEC
Confidence 344578999995 5667899999999999999875
No 189
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=29.49 E-value=37 Score=35.60 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=33.8
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+..|+|+.+-...+ -|- +++|+-..-...+.+. +.++.|++|+.|..||+|+.+-
T Consensus 99 ~~~G~V~~~g~~~~----~G~-~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 99 SLSGTVVKAEKDPV----LGY-VVEVEHADGLSTVYQS----LSEVSVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp SSCEEEEEEEEETT----TEE-EEEEECSTTEEEEEEE----ESEESCCTTCEECTTCEEEECB
T ss_pred CcCeEEEEEEecCC----Cce-EEEEEeCCCEEEEEec----CCccccCCCCEECCCCEEEEeC
Confidence 56677766643321 122 3345443323333333 4467899999999999999874
No 190
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=29.39 E-value=1.5e+02 Score=34.44 Aligned_cols=121 Identities=15% Similarity=0.004 Sum_probs=54.6
Q ss_pred CceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCC-
Q psy2375 563 GQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQ- 640 (929)
Q Consensus 563 gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~t- 640 (929)
...+-....|+++..+ |. |||... +...++ .+..+ |..-+.-=+-.+-..+.|-+.|.|.......+.+...
T Consensus 59 ~~~~i~~~~E~~Aa~~--A~--GyAr~t-gkp~v~~~TsGp-G~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~ 132 (565)
T 2nxw_A 59 ILPLHTLSHEPAVGFA--AD--AAARYS-STLGVAAVTYGA-GAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLH 132 (565)
T ss_dssp SSCEEECSSHHHHHHH--HH--HHHHHH-TSCEEEEECTTH-HHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-
T ss_pred CcEEEecCcHHHHHHH--HH--HHHHHh-CCCeEEEECCCC-CHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCccee
Confidence 3334456999996654 44 466542 133333 33333 2221211122222345666666666544334443333
Q ss_pred CCC--hh-hHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEec
Q psy2375 641 HED--GH-SHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITV 691 (929)
Q Consensus 641 Hq~--~e-d~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~ 691 (929)
||. .. ...+++.+-.. .+...++.++...++.|++... +++ |||+-++.
T Consensus 133 ~~~q~~d~q~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~G-PV~l~iP~ 185 (565)
T 2nxw_A 133 HQGRTLDTQFQVFKEITVA-QARLDDPAKAPAEIARVLGAARAQSR-PVYLEIPR 185 (565)
T ss_dssp ------CHHHHHHTTSCSC-EEECCCTTTHHHHHHHHHHHHHHHTC-CEEEEEEG
T ss_pred eeccchhhHHHHHHhhheE-EEEeCCHHHHHHHHHHHHHHHHhCCC-CEEEECCh
Confidence 433 43 46788877543 2333333334444444443211 133 49998884
No 191
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=29.33 E-value=1.7e+02 Score=33.96 Aligned_cols=119 Identities=12% Similarity=0.030 Sum_probs=63.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc-CCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC-CCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS-NCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING-EGLQ 640 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~-G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~-dG~t 640 (929)
|++.+ ..|+++..+ |. |||.. | ...+++ +..+ |..-+.--+-.+-..+.|-+.|.|....-..+. .| .
T Consensus 49 ~~i~~-~~E~~Aa~~--A~--GyAr~tg--~pgv~~~TsGp-G~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~-~ 119 (568)
T 2c31_A 49 RFYSF-RHEQHAGYA--AS--IAGYIEG--KPGVCLTVSAP-GFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQG-D 119 (568)
T ss_dssp EEEEC-SSHHHHHHH--HH--HHHHHHS--SCEEEEECSHH-HHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCC-C
T ss_pred cEEEe-CcHHHHHHH--HH--HHHHHhC--CCEEEEEcCCc-cHHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCC-c
Confidence 56654 999986654 44 46654 4 333433 3333 222222212223334566666666554332331 22 3
Q ss_pred CCChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 641 HEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 641 Hq~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
+|......+++.+-.. .+...++.++...++.|++... ++..|||+-++..
T Consensus 120 ~Q~~dq~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 120 YEEMDQMNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp TTCCCHHHHSGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred ccccCHHHHHHhhhhe-eeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 6666667788877654 3444555667677777765432 2334599888753
No 192
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=28.69 E-value=31 Score=33.91 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=22.8
Q ss_pred ccceeeeeeecCCeecCCCeEEEEEec
Q psy2375 865 EVEVSTVMVKIGDTIKIDQSLLVVESE 891 (929)
Q Consensus 865 eg~V~~~~vk~Gd~V~~Gd~l~~iEt~ 891 (929)
.|.--+.+|+.||+|++||+|+.+.-+
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHH
Confidence 456778899999999999999988643
No 193
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=28.43 E-value=2.2e+02 Score=33.91 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=37.3
Q ss_pred EEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCCc--ccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 222 KIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR--LDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 222 ~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~~--idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
.+++....... ..++++.+++..+++ +++++-.-... -|||+-- .++++ ..|+.. |+.|+.
T Consensus 429 P~~~tf~~F~~---~~~~~ir~~a~~~lp-vv~~~t~~g~~~G~dG~tHq---~~edl-a~lr~iP~l~V~~ 492 (669)
T 2r8o_A 429 PYTSTFLMFVE---YARNAVRMAALMKQR-QVMVYTHDSIGLGEDGPTHQ---PVEQV-ASLRVTPNMSTWR 492 (669)
T ss_dssp EEEEEEGGGGG---TTHHHHHHHHHTTCC-CEEEEECCSGGGCTTCTTTC---CSSHH-HHHHTSTTCEEEC
T ss_pred EEEeehHHHHH---HHHHHHHHHHhcCCC-EEEEEeCCCcCcCCCCCccC---CHHHH-HHhcCCCCCEEEe
Confidence 44555544432 568899999999986 88887544443 3666542 23333 456664 877654
No 194
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=28.23 E-value=36 Score=33.16 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.7
Q ss_pred CcEEEEEeChhHHHHH-HHHHHhccCCCceEEEEc
Q psy2375 726 LKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSA 759 (929)
Q Consensus 726 ~dv~Lia~G~~v~~al-AAe~L~~~~GI~a~Vvsv 759 (929)
.||+|||.|..= | ||-.|++. |++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~-G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAA-GHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHT-TCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHC-CCCEEEEEC
Confidence 389999999644 5 67788887 999999984
No 195
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=28.07 E-value=1.5e+02 Score=33.13 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=61.8
Q ss_pred eEEEEEecCCCcccccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcc----cchh-ccc
Q psy2375 251 NLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLD----GEYQ-NYR 325 (929)
Q Consensus 251 nli~vvn~N~~~idg~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~d----g~~q-~~~ 325 (929)
.+-+||++|.+.-..+..+...-.+.+.+.|+..|+.|.... .-+...+.+.+.+..+ ++.- .|.
T Consensus 6 r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~~lGF~V~~l~----------DlT~~eI~~aL~~f~~~~~~~D~~l~yf 75 (390)
T 3uoa_B 6 KVALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLL----------DLTEYEMRNAVDEFLLLLDKGVYGLLYY 75 (390)
T ss_dssp EEEEEEECCCCSSSCCCSTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEEecCCCCcccCCChHHHHHHHHHHHHHcCCeEEEee----------cCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 577888888776433333322335778999999999986541 1244455555555433 2221 122
Q ss_pred cCCchhhHhhccCCChhHHHHHhhcCcccccc-CCCCCC---------cHHHHHHHHHHHHhCCCCCeEEEEeeeccc
Q psy2375 326 SKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWN-LTFGGH---------DLRKIYSAFKMAQKNKDKPTVLLIKSIKGY 393 (929)
Q Consensus 326 ~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~-l~~dGh---------D~~~v~~a~~~a~~~~~~P~vI~~~T~KG~ 393 (929)
+..|.... .-.+ ++.|+. .++.|.+.+.. ..++|.|+++..=.|.
T Consensus 76 sGHG~~~~--------------------g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~---~~~K~kL~ILDACrg~ 130 (390)
T 3uoa_B 76 AGHGYENF--------------------GNSFMVPVDAPNPYRSENCLCVQNILKLMQE---KETGLNVFLLDMCRKR 130 (390)
T ss_dssp ESCEEEET--------------------TEEEECCTTCCSSCCGGGSEEHHHHHHHHHH---TTCSEEEEEEESCCCC
T ss_pred ecCccccC--------------------CcceEEecCCCccccccceeeHHHHHHHHHh---cCCCceEEEEECCCCC
Confidence 33332110 0112 133443 56777776654 3578999999987764
No 196
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=28.07 E-value=30 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=31.6
Q ss_pred cCChhhHHhhhcceeheeccccccCcCCccccceeeeeeecCCeecCCCeEEEEEec
Q psy2375 835 SDTRKKLRDFFENIIHMKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESE 891 (929)
Q Consensus 835 sgs~~~L~~~fgldae~Iv~~al~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~ 891 (929)
+++--+++=|.|+|.-. -.|.--+++|+.||+|++||+|+++.-+
T Consensus 96 s~~G~EvLIHIGiDTV~------------L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~ 140 (183)
T 3our_B 96 SDDGVELFVHFGIDTVE------------LKGEGFTRIAEEGQTVKAGDTVIEFDLA 140 (183)
T ss_dssp ETTSCEEEEECSBSGGG------------GTTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred eCCCCEEEEEecccccc------------cCCccceEEEeCcCEEcCCCEEEEECHH
Confidence 33445555566655433 1366678899999999999999988643
No 197
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=27.66 E-value=1.3e+02 Score=34.72 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=56.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||... + .+++ .+..+ |..-+.-=+-.+-..+.|-+.|.|....-..+.+-..||
T Consensus 44 ~~v~-~~~E~~Aa~~--A~--Gyar~t-g-~~v~~~TsGp-G~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~ 115 (563)
T 2vk8_A 44 RWAG-NANELNAAYA--AD--GYARIK-G-MSCIITTFGV-GELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHH 115 (563)
T ss_dssp EECC-CSSHHHHHHH--HH--HHHHHH-S-CEEEEEETTH-HHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTT
T ss_pred eEEc-cCchHHHHHH--HH--HHHHhh-C-CcEEEEcCCC-cHHHHHHHHHHHHhhCCCEEEEECCCChHHhhccccccc
Confidence 5554 5899997654 44 466543 3 3343 33333 211111112222224566666666554332333333443
Q ss_pred Ch------hhHHHHhcCCCcEEEccCCH----HHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DG------HSHVLASTIPNCIPYDPTFA----HEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~------ed~~l~r~iPnl~v~~Pada----~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
.. +...+++.+-.. .+...++ ..+..+++.++.. ++ |||+-++..
T Consensus 116 ~~g~~~~q~~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~---~G-PV~l~iP~d 170 (563)
T 2vk8_A 116 TLGNGDFTVFHRMSANISET-TAMITDIATAPAEIDRCIRTTYVT---QR-PVYLGLPAN 170 (563)
T ss_dssp SCSSSCSSHHHHHHHTTCSE-EEECCCTTTHHHHHHHHHHHHHHH---TS-CEEEEEETT
T ss_pred ccCCcchHHHHHHhhhhEEE-EEEeCCHHHHHHHHHHHHHHHHhC---CC-CEEEEechh
Confidence 22 235677777643 3333443 3445555555544 32 499988754
No 198
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=27.64 E-value=1.9e+02 Score=34.56 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=36.6
Q ss_pred cEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCC--CcccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNL--QRLDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~--~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
+.+++....... -.++++.+++..+++ +++++-.-. ..-|||+-- .++++ ..|+.. |+.|+.
T Consensus 441 ~P~~~t~~~F~~---~~~~~ir~~a~~~lp-vv~~~t~~g~g~G~dG~tHq---~~edl-a~lr~iP~l~V~~ 505 (675)
T 1itz_A 441 VPYCATFFVFTD---YMRGAMRISALSEAG-VIYVMTHDSIGLGEDGPTHQ---PIEHL-VSFRAMPNILMLR 505 (675)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTTC---CSSHH-HHHHSSSSCEEEC
T ss_pred EEEEEEHHHHHH---HHHHHHHHHHhcCCC-EEEEEECCccccCCCCCCcC---cHHHH-HHhccCCCeEEEE
Confidence 445555544432 568899999999996 888874333 334666642 23333 456653 665543
No 199
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=27.45 E-value=89 Score=33.79 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=61.3
Q ss_pred EEEEEecCCCccc--ccccccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc------
Q psy2375 252 LIMIVNCNLQRLD--GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN------ 323 (929)
Q Consensus 252 li~vvn~N~~~id--g~v~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~------ 323 (929)
+.+|||+..+.-. .+-.|...-.+.|...|+..|+.|.... .-+...+.+.|.+..+-+.+.
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~f~~~dh~~~D~~vv 131 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP----------NLKSEEINKFIQQTAEMDHSDADCLLV 131 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHSSCGGGBSCEEE
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEec----------CCCHHHHHHHHHHHHHhccCCCCEEEE
Confidence 6777776655421 1111111235779999999999987652 225556777776665432111
Q ss_pred cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHH--HHhCCCCCeEEEEeeecccC
Q psy2375 324 YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 324 ~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G 394 (929)
+....|. ...+++. || -+++.|...|.. .....+||.|+++..=+|.-
T Consensus 132 ~ilSHG~--~g~i~g~---------------------D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~ 182 (310)
T 2nn3_C 132 AVLTAGE--LGMLYAK---------------------DTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDR 182 (310)
T ss_dssp EEEEEEE--TTEEECS---------------------SCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCC
T ss_pred EEeCCCC--CCEEEec---------------------CCcEEHHHHHHHhccccChhhcCCceEEEEecccCCc
Confidence 1111221 2344444 33 245666666642 12345899999999988753
No 200
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=27.35 E-value=1.6e+02 Score=34.05 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=59.2
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED 643 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq~ 643 (929)
|++- ...|+++..+ |. |||... |.-.++.+..+-. .-+.-=+-.+-..+.|-++|.|.......+.+...||.
T Consensus 65 ~~i~-~~~E~~A~~~--A~--GyAr~t-G~~v~~~tsGpG~-~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~ 137 (570)
T 2vbf_A 65 KWIG-NANELNASYM--AD--GYARTK-KAAAFLTTFGVGE-LSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHT 137 (570)
T ss_dssp EEEE-CSSHHHHHHH--HH--HHHHHH-SCEEEEEETTHHH-HHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTS
T ss_pred eEEC-cCcHHHHHHH--HH--HHHHHh-CCeEEEEcCCCCH-HHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceee
Confidence 5554 5999997654 44 477442 3222333444322 11221122222335566666665554334444455652
Q ss_pred h------hhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 644 G------HSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 644 ~------ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
. +...+++.+....... .+ .++..+++.+++... +++ ||++-++..
T Consensus 138 ~~~~~~~~~~~~~~~~tk~~~~v-~~-~~~~~~l~~A~~~A~~~~G-PV~l~iP~d 190 (570)
T 2vbf_A 138 LADGDFKHFMKMHEPVTAARTLL-TA-ENATYEIDRVLSQLLKERK-PVYINLPVD 190 (570)
T ss_dssp CSSSCCCHHHHHTGGGCSEEEEC-CT-TTHHHHHHHHHHHHHHHCC-CEEEEEEHH
T ss_pred ccccchHHHHHHhhhhEEEEEEE-Cc-ccHHHHHHHHHHHHhhCCC-CEEEEcchh
Confidence 2 2356777776544333 34 556666665554221 233 499888753
No 201
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=27.25 E-value=2.5e+02 Score=33.53 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=65.1
Q ss_pred cCCceEeccccchhhHHHHHHHHHHHhccCCCceEEEEeeh--hhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeec---
Q psy2375 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYS--MFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTIN--- 635 (929)
Q Consensus 561 ~~gR~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~~ys--~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g--- 635 (929)
.|.+++..|.. +.||.-+.+++|++... +-.+++++.. .|. +-..+ +|.+..++.+.++++.-.++++.-
T Consensus 502 ~p~~~~~sg~~--G~mG~~lpaAiGaalA~-p~~~Vv~i~GDGsf~-~~~~e-L~ta~~~~l~v~ivV~NN~~~g~~~~~ 576 (677)
T 1t9b_A 502 NPHTFITSGGL--GTMGYGLPAAIGAQVAK-PESLVIDIDGDASFN-MTLTE-LSSAVQAGTPVKILILNNEEQGMVTQW 576 (677)
T ss_dssp STTCEECCCSS--CCTTCHHHHHHHHHHHC-TTSEEEEEEEHHHHH-HHGGG-HHHHHHHTCCCEEEEEECSSCHHHHHH
T ss_pred CCCeEEeCCCc--chhhchHHHHHHHHHhC-CCCeEEEEEeehHHh-ccHHH-HHHHHHhCCCeEEEEEeCCCchhhhhh
Confidence 46788877652 33332234444444332 2344554444 453 23344 577777777766676666544310
Q ss_pred -----CCC--CCCCChhhH-HHHhcCCCcEEEccCCHHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 636 -----GEG--LQHEDGHSH-VLASTIPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 636 -----~dG--~tHq~~ed~-~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
.+- .++....|+ .++++. |+..+...+..|+..+++.++.. ++| +++.+..
T Consensus 577 ~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~---~gp-~lIev~~ 635 (677)
T 1t9b_A 577 QSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRVKKQEELDAKLKEFVST---KGP-VLLEVEV 635 (677)
T ss_dssp HHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHC---SSC-EEEEEEB
T ss_pred hhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHHC---CCc-EEEEEEe
Confidence 111 112112233 344443 56666678999999999999875 333 6666544
No 202
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=26.93 E-value=14 Score=35.37 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.1
Q ss_pred eeecCCCEEEEEEee-cCCCcccCCCeEEEEee
Q psy2375 896 EIPSSHNGVVREIKV-KVGDKISKDSQILILEE 927 (929)
Q Consensus 896 ~I~Ap~~G~v~~i~~-~~G~~V~~G~~L~~i~~ 927 (929)
.+.+|..|.|..+.+ ++|+.|+.|++|++|+.
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIES 70 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEE
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEEE
Confidence 456677788888877 99999999999999985
No 203
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=26.83 E-value=2.7e+02 Score=33.05 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHcCCCeEEEEEecCCCcc--cccccccccchHHHHHHHhhC-CceEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVNCNLQRL--DGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn~N~~~i--dg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
-.++++.+++..+++ +++++....... |||+-- .++++ ..|+.. ||.|+.
T Consensus 435 ~~~~air~~a~~~lp-vv~~~t~~g~g~G~dG~tHq---~~edl-a~lr~iP~l~V~~ 487 (651)
T 2e6k_A 435 YMRPAIRLAALMGVP-TVFVFTHDSIALGEDGPTHQ---PVEHL-MSLRAMPNLFVIR 487 (651)
T ss_dssp GSHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTTC---CSSHH-HHHHTSTTCEEEC
T ss_pred HHHHHHHHHHhcCCC-EEEEEECCccccCCCcCccc---cHHHH-HHhcCCCCcEEEe
Confidence 568889999999986 888874444433 666541 23333 456765 887765
No 204
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=26.56 E-value=2.2e+02 Score=32.92 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=62.6
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecC-CCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTING-EGLQH 641 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~-dG~tH 641 (929)
|++.+ ..|+++..+ |. |||... +...++ .+..+ |..-+.--+-.+-..+.|-+.|.|....-..+. .| .+
T Consensus 47 ~~i~~-~hE~~Aa~~--A~--Gyar~t-g~pgv~~~TsGp-G~~N~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~-~~ 118 (564)
T 2q28_A 47 RYIGF-RHEQSAGYA--AA--ASGFLT-QKPGICLTVSAP-GFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQG-DY 118 (564)
T ss_dssp EEEEC-SSHHHHHHH--HH--HHHHHH-SSCEEEEECSHH-HHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTSC-CT
T ss_pred cEEee-CCHHHHHHH--HH--HHHHHh-CCCEEEEEccCc-hHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCC-cc
Confidence 56654 999986654 44 466542 133333 33333 222222112222234566666665554322331 22 36
Q ss_pred CChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 642 EDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 642 q~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
|......+++.+-... +...++.++...++.|++... ++..|||+-++..
T Consensus 119 Q~~dq~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 119 EELDQMNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp TCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccccHHHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 7677778888876543 334455556666776665322 2334599888754
No 205
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=26.54 E-value=1.8e+02 Score=33.89 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=64.2
Q ss_pred ceEeccccchhhHHHHHHHHHHHhcc-CCCceEEEEeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTS-NCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~-G~~~iPf~~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++. ...|+++..+ |. |||.. |. .-.++.++.+=. .-+.--+-.+-..+.|-+.|.|....-.. +.|..||
T Consensus 45 ~~v~-~~hE~~Aa~~--A~--GyAr~tg~-p~v~~~TsGpG~-~N~~~gv~~A~~~~vPll~itg~~~~~~~-~~~~~~Q 116 (589)
T 2pgn_A 45 RVIN-PATELGGAWM--VN--GYNYVKDR-SAAVGAWHCVGN-LLLHAAMQEARTGRIPAVHIGLNSDGRLA-GRSEAAQ 116 (589)
T ss_dssp TCBC-CSSHHHHHHH--HH--HHHHHHTS-CCEEEEEEGGGG-GGCHHHHHHHHHTTCCEEEEEEESCGGGT-TCTTCSS
T ss_pred eEEE-eCcHHHHHHH--HH--HHHHHHCC-CEEEEEecCchH-HHHHHHHHHHHhcCCCEEEEecCCccccc-CCCCccc
Confidence 5554 4899986654 44 46653 31 223444555422 11111122222345665666555543222 2231578
Q ss_pred ChhhHHHHhcCCCcEEEccCCHHHHHHHHHHHHhhcc-CCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~~Pada~E~~~~l~~al~~~~-g~~~~v~~rl~~~ 692 (929)
...... ++.+-.. .+...++.++...++.|++... ++..|||+-++..
T Consensus 117 ~~d~~~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 117 QVPWQS-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp CCCGGG-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred ccChhh-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 777677 7776644 4455666777777777775433 2334699988754
No 206
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=26.05 E-value=1.8e+02 Score=31.16 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=53.4
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhccc-chhc-------cccCCchhhHhhccCCChhHHH
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDG-EYQN-------YRSKNSDFIRKNFFGKHPKLLK 345 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg-~~q~-------~~~~~g~~~r~~~fg~~~~~~~ 345 (929)
.+.|...|+..|+.|.... .-+...+.+.|.+...- +.+. |.+ .|.- ..++|.+
T Consensus 84 a~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~f~~~~dh~~~d~~vv~~ls-HG~~--~~i~g~D----- 145 (302)
T 3e4c_A 84 ITGMTMLLQNLGYSVDVKK----------NLTASDMTTELEAFAHRPEHKTSDSTFLVFMS-HGIR--EGICGKK----- 145 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEE----------SCCHHHHHHHHHHHHTCGGGGGCSCEEEEEEE-EEET--TEEECTT-----
T ss_pred HHHHHHHHHHCCCEEEEee----------CCCHHHHHHHHHHHHhhhccCCCCEEEEEEec-cCcC--CeEEeec-----
Confidence 5779999999999987652 12556677777665431 1111 111 1211 1234431
Q ss_pred HHhhcCccccccCCCCCCcHHHHHHHHHHH--HhCCCCCeEEEEeeecccCC
Q psy2375 346 MIEEMSDEDIWNLTFGGHDLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 346 ~v~~~~d~~i~~l~~dGhD~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G~ 395 (929)
-+|.+ .+.-+++.|...|... ....+||.|+++..=+|.-.
T Consensus 146 ----~~~~~-----~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~ 188 (302)
T 3e4c_A 146 ----HSEQV-----PDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSP 188 (302)
T ss_dssp ----CCSSS-----CCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSC
T ss_pred ----ccccC-----CcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCC
Confidence 00000 0123577777777532 22358999999999888654
No 207
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=25.85 E-value=2.5e+02 Score=33.18 Aligned_cols=62 Identities=19% Similarity=0.035 Sum_probs=41.0
Q ss_pred cEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCCC--cccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQ--RLDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~~--~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
+.+.+..+++.. ..++.|.+++..+++ ++++++.-+. ..|||+.- ..+-...|+.. |+.|+.
T Consensus 381 ~~~~~~f~~Fl~---~a~dqi~~~a~~~~~-v~~v~~~~g~~~G~dG~tH~----~~ed~a~l~~iP~l~V~~ 445 (616)
T 3mos_A 381 VPFCSTFAAFFT---RAFDQIRMAAISESN-INLCGSHCGVSIGEDGPSQM----ALEDLAMFRSVPTSTVFY 445 (616)
T ss_dssp EEEEEEEGGGGG---GGHHHHHHHHHTTCC-EEEEEESBSGGGCTTCGGGC----BSSHHHHHHTSTTEEEEC
T ss_pred CEEEEehHHHHH---HHHHHHHHHHHhCCC-eEEEEECCCccccCCCCccc----CHHHHHHhcCCCCCEEEe
Confidence 345668889864 789999999999985 8888775554 33566431 22334667765 766543
No 208
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=24.55 E-value=51 Score=34.62 Aligned_cols=88 Identities=8% Similarity=-0.060 Sum_probs=45.2
Q ss_pred CcccccCChhhHHhhhcceeheeccccc-cCcCCccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEE
Q psy2375 830 DGFGCSDTRKKLRDFFENIIHMKKIIKV-PNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREI 908 (929)
Q Consensus 830 d~Fg~sgs~~~L~~~fgldae~Iv~~al-~~LG~i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i 908 (929)
.+|+.+-....-+-|.|+|-..-.-..- .-+-.+..|+|+.+-...+ -| ..++|+-..-...+.+. +.++
T Consensus 111 ~g~~~~~~~g~~~~H~GiDi~a~~Gt~~~~pV~A~~~G~V~~~g~~~~----~G-~~V~I~H~~G~~t~Y~H----L~~~ 181 (252)
T 3nyy_A 111 DSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEK----GG-WRIGITAPTGAYFYYAH----LDSY 181 (252)
T ss_dssp CCHHHHHTTCSCTTCCCEEEEESSCCTTCSEEECSSCEEEEEEEEETT----TE-EEEEEECTTSCEEEEEE----ESEE
T ss_pred CCCCcCCCCCCCccCccEEEecCCCCCCCceEEeccCEEEEEEEecCC----CC-CEEEEEeCCcEEEEEee----CCCC
Confidence 4455433322223566776543221100 0122366788876644321 12 23345443322234433 3445
Q ss_pred -eecCCCcccCCCeEEEEe
Q psy2375 909 -KVKVGDKISKDSQILILE 926 (929)
Q Consensus 909 -~~~~G~~V~~G~~L~~i~ 926 (929)
.|++||.|+.||+|+.+-
T Consensus 182 ~~V~~G~~V~~Gq~IG~vG 200 (252)
T 3nyy_A 182 AELEKGDPVKAGDLLGYMG 200 (252)
T ss_dssp CSCCTTCEECTTCEEEECB
T ss_pred CcCCCCCEECCCCEEEEEC
Confidence 799999999999999874
No 209
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=23.53 E-value=1.1e+02 Score=31.85 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHhccCCCceEEEEcccccccccchhhhhhhhccCCCccchHHHHHHHhccCCCcEEEEecccchhHHHHHhhc
Q psy2375 742 ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFI 818 (929)
Q Consensus 742 AAe~L~~~~GI~a~Vvsv~s~~pLd~~~~~~~~~~~l~p~~~~~~~~~~~~l~~~~~~vVtved~~~~~~~~i~~~l 818 (929)
+++.|++. |+.++++++..+...+.+. . .| ..-..+.+++.... +-||+.=.|+.+++.++..|+
T Consensus 57 ~~~~l~~~-g~eve~idL~~~pl~~~d~------~--~~--d~~~~l~~~i~~AD-~iI~~sP~Yn~sipa~LKn~i 121 (247)
T 2q62_A 57 ARRLLEFF-GAEVKVFDPSGLPLPDAAP------V--SH--PKVQELRELSIWSE-GQVWVSPERHGAMTGIMKAQI 121 (247)
T ss_dssp HHHHHHHT-TCEEEECCCTTCCCTTSSC------T--TS--HHHHHHHHHHHHCS-EEEEEEECSSSSCCHHHHHHH
T ss_pred HHHHHhhC-CCEEEEEEhhcCCCCcCCC------C--CC--HHHHHHHHHHHHCC-EEEEEeCCCCCCccHHHHHHH
Confidence 66777766 9999999998764333221 0 11 11233444554443 666666688887777776654
No 210
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=23.50 E-value=55 Score=34.95 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=32.5
Q ss_pred ccccceeeeeeecCCeecCCCeEEEEEecceeeeeecCCCEEEEEEeecCCCcccCCCeEEEEe
Q psy2375 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 863 i~eg~V~~~~vk~Gd~V~~Gd~l~~iEt~K~~~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+..|+|+.+-- .-.-|-.| +|+-..-...+.+. +.++.|++||.|+.||+|+.+-
T Consensus 196 ~~~G~V~~~g~----~~~~G~~V-iI~Hg~G~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~vG 250 (282)
T 2hsi_A 196 PAAGKVILIGD----YFFNGKTV-FVDHGQGFISMFCH----LSKIDVKLGQQVPRGGVLGKVG 250 (282)
T ss_dssp SSCEEEEEEEE----ETTTEEEE-EEEEETTEEEEEEE----ESEECSCTTCEECTTCEEEECC
T ss_pred ccCeEEEEEEE----cCCCCCEE-EEEeCCcEEEEEEC----CCccccCCcCEECCCCEEEEEC
Confidence 56787766532 11123333 44433222333333 3467899999999999999864
No 211
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=23.43 E-value=92 Score=30.79 Aligned_cols=111 Identities=18% Similarity=0.293 Sum_probs=62.0
Q ss_pred EEEEEecCCCcccc--cc-cccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc-----
Q psy2375 252 LIMIVNCNLQRLDG--PV-RGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN----- 323 (929)
Q Consensus 252 li~vvn~N~~~idg--~v-~~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~----- 323 (929)
+.+|||+-...-.. +. .|...-.+.|...|+..|+.|.... .-+...+.+.|.+...-+.+.
T Consensus 46 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~----------dlt~~em~~~l~~~s~~dh~~~dc~v 115 (173)
T 2ql9_A 46 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN----------DCSCAKMQDLLKKASEEDHTNAACFA 115 (173)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEE----------SCCHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred EEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEe----------CCCHHHHHHHHHHHHHhhccCCCeEE
Confidence 66777765443211 11 1212335789999999999986541 225566777777665443221
Q ss_pred -cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHHH--HhCCCCCeEEEEeeecccCC
Q psy2375 324 -YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKMA--QKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 324 -~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~a--~~~~~~P~vI~~~T~KG~G~ 395 (929)
+....|. ...++|. || -++++|...|... ....+||.++++..=+|.-.
T Consensus 116 vvilSHG~--~g~I~g~---------------------D~~~~i~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~ 168 (173)
T 2ql9_A 116 CILLSHGE--ENVIYGK---------------------DGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTEL 168 (173)
T ss_dssp EEEESCEE--TTEEEET---------------------TEEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EeecCCCC--CCEEEEc---------------------CCcEEHHHHHHHcCcccChhHcCCCeEEEEECCCCCCc
Confidence 1111221 1244444 44 2556666655421 22358999999998877543
No 212
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=23.14 E-value=1.5e+02 Score=31.21 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=58.6
Q ss_pred EEEEEecCCCcccc--ccc-ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhc-----
Q psy2375 252 LIMIVNCNLQRLDG--PVR-GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQN----- 323 (929)
Q Consensus 252 li~vvn~N~~~idg--~v~-~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~----- 323 (929)
+.+|||+-.+.-.. +.| |...-.+.|...|+..|+.|.... .-+...+.+.|.+..+-+.+.
T Consensus 23 ~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~----------dlt~~em~~~l~~~~~~~h~~~D~~v 92 (277)
T 1nw9_B 23 HCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKG----------DLTAKKMVLALLELARQDHGALDCCV 92 (277)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEE----------SCCHHHHHHHHHHHHHSCCTTCSEEE
T ss_pred EEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEc----------CCCHHHHHHHHHHHHHhhcccCCeEE
Confidence 66666665553211 111 111235779999999999987642 225556677776654422111
Q ss_pred --cccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCCC--cHHHHHHHHHH--HHhCCCCCeEEEEeeecccC
Q psy2375 324 --YRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGH--DLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYG 394 (929)
Q Consensus 324 --~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dGh--D~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G 394 (929)
|.+ .|.-.. +. .-+..|+ ..||. .+++|...|.. .....+||.|+++..=+|.-
T Consensus 93 v~ilS-HG~~~~----~~----------~~~g~iy--~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~ 152 (277)
T 1nw9_B 93 VVILS-HGCQAS----HL----------QFPGAVY--GTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQ 152 (277)
T ss_dssp EEEEE-EEECCC----CS----------SSCCEEE--CTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---
T ss_pred EEEeC-CCCccc----cc----------cCCCcEE--ecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCc
Confidence 111 111000 00 0001222 12553 57777777653 22345899999999887754
No 213
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=23.01 E-value=1.4e+02 Score=28.78 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=52.5
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCcc
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDE 353 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~ 353 (929)
.+.+.......|+.+.- ++....|.|.+++.+..+..+....-+.|+|+
T Consensus 30 ~~~l~~~a~~~g~~v~~----------~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~T--------------------- 78 (149)
T 2uyg_A 30 EALCEAWGAELGLGVVF----------RQTNYEGQLIEWVQQAHQEGFLAIVLNPGALT--------------------- 78 (149)
T ss_dssp HHHHHHHHHHTTCCEEE----------EECSCHHHHHHHHHHTTTTTCSEEEEECGGGG---------------------
T ss_pred HHHHHHHHHHcCCEEEE----------EeeCCHHHHHHHHHHhccCCeeEEEEccchhc---------------------
Confidence 45567777888987643 56789999999999997644778888899986
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEe
Q psy2375 354 DIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIK 388 (929)
Q Consensus 354 ~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~ 388 (929)
|.--+|..|++.. +.| +|.+|
T Consensus 79 ---------HtSvAlrDAl~~v----~~P-~VEVH 99 (149)
T 2uyg_A 79 ---------HYSYALLDAIRAQ----PLP-VVEVH 99 (149)
T ss_dssp ---------GTCHHHHHHHHTS----CSC-EEEEE
T ss_pred ---------cccHHHHHHHHhC----CCC-EEEEE
Confidence 6667788887643 568 46655
No 214
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=22.59 E-value=2.2e+02 Score=25.33 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=28.6
Q ss_pred CcEEEEEeCh----hHHHHH-HHHHHhccCCCceEEEEccc
Q psy2375 726 LKVQLIGSGA----ILREIL-ASKILLQEWDIDSAVWSATS 761 (929)
Q Consensus 726 ~dv~Lia~G~----~v~~al-AAe~L~~~~GI~a~Vvsv~s 761 (929)
..|+|++.|+ ..+.|. |.++|.+. ||..+.+|+..
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-gi~y~~~di~~ 55 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKH-NIQFSSFDIFS 55 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHc-CCCeEEEECcC
Confidence 4799999874 457888 99999886 99999998853
No 215
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=22.59 E-value=2.7e+02 Score=33.18 Aligned_cols=62 Identities=18% Similarity=0.045 Sum_probs=38.1
Q ss_pred cEEEEEEcCCccCCcccHHHHHHHHHcCCCeEEEEEecCC--CcccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 221 RKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNL--QRLDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 221 ~~v~~~~GDGe~~eg~~~eAl~~A~~~~L~nli~vvn~N~--~~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
+.+++...+-.. ..+.++.+++..+++ ++|+..... ..-|||+-- .+ +-...|+.. |+.|+.
T Consensus 429 ~P~~~tf~~F~~---~~~~~ir~~a~~~lp-vv~~~t~~g~g~G~dG~THq---~~-ed~a~lr~iPnl~V~~ 493 (663)
T 3kom_A 429 KPYGGTFLVFSD---YSRNAIRMSALMKQP-VVHVMSHDSIGLGEDGPTHQ---PI-EHVPSLRLIPNLSVWR 493 (663)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHTTCC-CEEEEECCSGGGCTTCTTTC---CS-SHHHHHHTSTTCEEEC
T ss_pred EEEEEehHHHHH---HHHHHHHHHHhcCCC-EEEEEeCCccccCCCCCCcC---CH-HHHHHHhcCCCcEEEe
Confidence 345555555432 457889999999986 888875444 345677652 22 334566765 766544
No 216
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=22.28 E-value=1.6e+02 Score=28.55 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=52.1
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCcc
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDE 353 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~ 353 (929)
.+.+.......|+.+.. ++....|.|.+++.+..+ ++....-+.|+|+
T Consensus 32 ~~~l~~~a~~~g~~l~~----------~QSN~EGeLId~Ih~a~~-~~dgiIINpgA~T--------------------- 79 (154)
T 1uqr_A 32 EQHLQQSAQAQGYELDY----------FQANGEESLINRIHQAFQ-NTDFIIINPGAFT--------------------- 79 (154)
T ss_dssp HHHHHHHHHHTTCEEEE----------EECSSHHHHHHHHHHTTT-TCCEEEEECTTHH---------------------
T ss_pred HHHHHHHHHHCCCEEEE----------EeeCCHHHHHHHHHHhhh-cCcEEEECcchhc---------------------
Confidence 45566777888987543 567899999999999965 4788888889987
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEe
Q psy2375 354 DIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIK 388 (929)
Q Consensus 354 ~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~ 388 (929)
|.--+|..|++.. +.| +|.+|
T Consensus 80 ---------HtSvAlrDAl~~v----~~P-~VEVH 100 (154)
T 1uqr_A 80 ---------HTSVAIRDALLAV----SIP-FIEVH 100 (154)
T ss_dssp ---------HHCHHHHHHHHHH----TCC-EEEEE
T ss_pred ---------cchHHHHHHHHhC----CCC-EEEEE
Confidence 5667788888754 468 46655
No 217
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=21.68 E-value=1.4e+02 Score=28.60 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=51.6
Q ss_pred hHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCcc
Q psy2375 274 IQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDE 353 (929)
Q Consensus 274 ~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~ 353 (929)
.+.+.......|+.+.. ++....|.|.+++.+..+ ++....-+.|+|+
T Consensus 33 ~~~l~~~a~~~g~~~~~----------~QSN~EgeLId~Ih~a~~-~~dgiiINpgA~T--------------------- 80 (146)
T 1h05_A 33 VALIEREAAELGLKAVV----------RQSDSEAQLLDWIHQAAD-AAEPVILNAGGLT--------------------- 80 (146)
T ss_dssp HHHHHHHHHHTTCEEEE----------EECSCHHHHHHHHHHHHH-HTCCEEEECGGGG---------------------
T ss_pred HHHHHHHHHHcCCEEEE----------EeeCCHHHHHHHHHHhhh-cCcEEEECchhhc---------------------
Confidence 45566777888987543 567899999999999965 4778888899986
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEe
Q psy2375 354 DIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIK 388 (929)
Q Consensus 354 ~i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~ 388 (929)
|.--+|..|++.. +.| +|.+|
T Consensus 81 ---------HtSvAlrDAl~~v----~~P-~VEVH 101 (146)
T 1h05_A 81 ---------HTSVALRDACAEL----SAP-LIEVH 101 (146)
T ss_dssp ---------GTCHHHHHHHHTC----CSC-EEEEE
T ss_pred ---------cccHHHHHHHHhC----CCC-EEEEE
Confidence 6667788887643 568 46655
No 218
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=21.61 E-value=2.6e+02 Score=33.46 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHcCCCeEEEEEecCCCc--ccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVNCNLQR--LDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn~N~~~--idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
..++++.+++..+++ ++|++-.-+.. -|||+-- .+++ ...|+.. |+.|+.
T Consensus 448 ~~~~air~~a~~~lp-vv~v~t~~g~g~G~dG~tHq---~~ed-la~lr~iP~l~V~~ 500 (680)
T 1gpu_A 448 YAAGAVRLSALSGHP-VIWVATHDSIGVGEDGPTHQ---PIET-LAHFRSLPNIQVWR 500 (680)
T ss_dssp GGHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTTC---CSSH-HHHHHTSSSCEEEC
T ss_pred HHHHHHHHHHhcCCC-EEEEEeCCccccCCCCCccC---CHHH-HHHhcCCCCCEEEe
Confidence 468889999999986 88888544443 4677652 2222 3567764 776554
No 219
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=21.54 E-value=2.4e+02 Score=24.89 Aligned_cols=34 Identities=18% Similarity=0.021 Sum_probs=29.1
Q ss_pred CcEEEEEeCh----hHHHHH-HHHHHhccCCCceEEEEcc
Q psy2375 726 LKVQLIGSGA----ILREIL-ASKILLQEWDIDSAVWSAT 760 (929)
Q Consensus 726 ~dv~Lia~G~----~v~~al-AAe~L~~~~GI~a~Vvsv~ 760 (929)
..|+|++.++ .-+.|. |.++|.+. ||..+.+++.
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-gi~~~~~dI~ 56 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNL-NVPFEDVNIL 56 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGG
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHc-CCCcEEEECC
Confidence 4799999984 677899 99999887 9999999985
No 220
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=21.46 E-value=3.8e+02 Score=31.94 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHcCCCeEEEEEecCCC--cccccccccccchHHHHHHHhhC-CceEEE
Q psy2375 236 ESISEISMAAREKLDNLIMIVNCNLQ--RLDGPVRGNSKIIQELEAHFYGV-GWNVIK 290 (929)
Q Consensus 236 ~~~eAl~~A~~~~L~nli~vvn~N~~--~idg~v~~~~~~~~~l~~~f~~~-Gw~vi~ 290 (929)
-.+.++.+++..+++ +++++..-.. .-|||+-- .++++ ..|+.. |+.|+.
T Consensus 440 ~~~~~ir~~a~~~~p-vv~~~t~~g~g~G~dG~tHq---~~edl-a~lr~iP~l~V~~ 492 (673)
T 1r9j_A 440 YALGAVRLAAISHHR-VIYVATHDSIGVGEDGPTHQ---PVELV-AALRAMPNLQVIR 492 (673)
T ss_dssp GGHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTTC---CSSHH-HHHHHSTTCEEEC
T ss_pred HHHHHHHHHHhcCCC-EEEEEECCccCcCCCCcccC---CHHHH-HHHcCCCCCEEEe
Confidence 568889999999986 8888744433 34677652 23333 456664 766543
No 221
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=20.99 E-value=3.4e+02 Score=31.28 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=63.5
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEE-EeehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFF-TFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~-~~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
+++- -..|+++.-+ | .|||..- |..-++ +|+.+ |..-+.-=+-.+-..+.|-+.|.|....-..+ .| .||
T Consensus 48 ~~i~-~~hE~~Aa~~--A--dGyAr~t-G~pgv~~~TsGp-G~~N~~~gia~A~~d~vPll~itG~~~~~~~g-~~-~~Q 118 (556)
T 3hww_A 48 IHHT-HFDERGLGHL--A--LGLAKVS-KQPVAVIVTSGT-AVANLYPALIEAGLTGEKLILLTADRPPELID-CG-ANQ 118 (556)
T ss_dssp EEEE-CSCHHHHHHH--H--HHHHHHH-CSCEEEEECSSH-HHHTTHHHHHHHHHHCCCEEEEEEECCGGGSS-SS-CTT
T ss_pred eEEE-ecCCcHHHHH--H--HHHHHhh-CCCEEEEECCCc-HHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhc-cC-CCc
Confidence 5554 4789996544 4 4577532 133333 34333 22222211222222355666665555433333 33 377
Q ss_pred ChhhHHHHhcCCCcEEE--ccCC---HHHHHHHHHHHHhhccCCCceEEEEEec
Q psy2375 643 DGHSHVLASTIPNCIPY--DPTF---AHEVAIIIHHGLHCMISNQEDVFYYITV 691 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~v~--~Pad---a~E~~~~l~~al~~~~g~~~~v~~rl~~ 691 (929)
......+++.+-....- .|.+ +.++..+++.|++. ++..|||+-++.
T Consensus 119 ~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 119 AIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp CCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred cccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 77777888877664333 4443 45688899999853 332359998885
No 222
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=20.79 E-value=2.2e+02 Score=33.32 Aligned_cols=116 Identities=14% Similarity=0.051 Sum_probs=56.2
Q ss_pred ceEeccccchhhHHHHHHHHHHHhccCCCceEEEE-eehhhHHHhHHHHHHHhhhhcCCcEEEEeecCCeeecCCCCCCC
Q psy2375 564 QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFT-FYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHE 642 (929)
Q Consensus 564 R~~~~GIaE~~~~~~~iAag~g~A~~G~~~iPf~~-~ys~F~~qR~~d~i~~~~~~~~~~v~i~~t~~~~~~g~dG~tHq 642 (929)
|++.+ ..|+++..+ |. |||... +...+++ ++.+ |..-+.--+-.+-..+.|-+.|.|.......+.+. +|
T Consensus 52 ~~i~~-~hE~~Aa~a--A~--GyAr~t-g~~gv~~~TsGp-G~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~--~Q 122 (603)
T 4feg_A 52 HYIQV-RHEEVGAMA--AA--ADAKLT-GKIGVCFGSAGP-GGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDT--FQ 122 (603)
T ss_dssp EEEEC-SSHHHHHHH--HH--HHHHHH-SSCEEEEECTTH-HHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCC--TT
T ss_pred eEEEe-cChHHHHHH--HH--HHHHHh-CCceEEEecCCc-hHHHHHHHHHHHHHcCCCEEEEecCCcccccCCCc--cc
Confidence 66654 899986544 44 576532 2333443 3333 22222211222223456666666655433333333 45
Q ss_pred ChhhHHHHhcCCCcE--EEccCCH-HHHHHHHHHHHhhccCCCceEEEEEecC
Q psy2375 643 DGHSHVLASTIPNCI--PYDPTFA-HEVAIIIHHGLHCMISNQEDVFYYITVM 692 (929)
Q Consensus 643 ~~ed~~l~r~iPnl~--v~~Pada-~E~~~~l~~al~~~~g~~~~v~~rl~~~ 692 (929)
......+++.+-... +-.|.+. ..+..+++.|+.. ++ |||+-++..
T Consensus 123 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~---~G-PV~l~iP~d 171 (603)
T 4feg_A 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAH---QG-VAVVQIPVD 171 (603)
T ss_dssp CCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHH---TS-EEEEEEETT
T ss_pred cccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcC---CC-CEEEEeChh
Confidence 555667777765532 2244442 2233344444443 33 599888753
No 223
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=20.76 E-value=19 Score=34.14 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=25.0
Q ss_pred CcEEEEEeChhHHHHH--HHHHHhccCCCceEEEEc
Q psy2375 726 LKVQLIGSGAILREIL--ASKILLQEWDIDSAVWSA 759 (929)
Q Consensus 726 ~dv~Lia~G~~v~~al--AAe~L~~~~GI~a~Vvsv 759 (929)
+++.|||+|......- ..+.|++. ||.+++-|-
T Consensus 65 pevliiGTG~~~~~l~p~~~~~l~~~-GI~vE~m~T 99 (132)
T 2gm2_A 65 PAVILLGTGERQQFPSTDVLAACLTR-GIGLEAMTN 99 (132)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHHH-TCEEEEECH
T ss_pred CCEEEECCCCCCCcCCHHHHHHHHHc-CCEEEEeCH
Confidence 6999999998764222 45568777 999998875
No 224
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=20.65 E-value=1.9e+02 Score=27.90 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchhccccCCchhhHhhccCCChhHHHHHhhcCccc
Q psy2375 275 QELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDED 354 (929)
Q Consensus 275 ~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~ 354 (929)
+.+.+.....|+.+.. ++....|.|.+++.+.. +.+....-++|+|+
T Consensus 36 ~~l~~~a~~~g~~v~~----------~QSN~EgeLId~Ih~a~-~~~dgiiINpgA~T---------------------- 82 (151)
T 3u80_A 36 KLCAEWGKDLGLEVEV----------RQTDDEAEMVRWMHQAA-DEKTPVVMNPAAFT---------------------- 82 (151)
T ss_dssp HHHHHHHHHTTEEEEE----------EECSCHHHHHHHHHHHH-HHTCCEEEECTTCC----------------------
T ss_pred HHHHHHHHHcCCEEEE----------EecCCHHHHHHHHHHhh-hcCcEEEECcchhh----------------------
Confidence 4455666778887543 56789999999999985 45777888888885
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEe
Q psy2375 355 IWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIK 388 (929)
Q Consensus 355 i~~l~~dGhD~~~v~~a~~~a~~~~~~P~vI~~~ 388 (929)
|.--+|..|++..... +.| +|.+|
T Consensus 83 --------HtSvAlrDAl~~l~~~-~~P-~VEVH 106 (151)
T 3u80_A 83 --------HYSYALADAAHMVIDE-NLP-LMEVH 106 (151)
T ss_dssp --------SCCHHHHHHHHHHHHT-TCC-EEEEE
T ss_pred --------hhhHHHHHHHHHHhhc-CCC-EEEEE
Confidence 6777898886643333 568 46654
No 225
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=20.45 E-value=66 Score=35.41 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEeecCCCcccCCCeEEEEe
Q psy2375 905 VREIKVKVGDKISKDSQILILE 926 (929)
Q Consensus 905 v~~i~~~~G~~V~~G~~L~~i~ 926 (929)
+.++.|++|+.|+.||+|+.+-
T Consensus 281 l~~~~v~~G~~V~~G~~Ig~~G 302 (361)
T 2gu1_A 281 LDKILVKKGQLVKRGQKIALAG 302 (361)
T ss_dssp ESEECCCTTCEECTTCEEEECC
T ss_pred cCccccCCcCEECCCCEEEEEC
Confidence 3457899999999999999874
No 226
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=20.33 E-value=75 Score=34.40 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=27.3
Q ss_pred eeeecCCCEEEEEEeecCCCcccCCCeEEEEee
Q psy2375 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927 (929)
Q Consensus 895 ~~I~Ap~~G~v~~i~~~~G~~V~~G~~L~~i~~ 927 (929)
.-++||..|.+. -.++.|+.|++||+|+.+.+
T Consensus 258 ~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~d 289 (332)
T 2qj8_A 258 DQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHP 289 (332)
T ss_dssp GEEECSSSEEEE-ECSCTTCEECTTCEEEEEEC
T ss_pred eEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEEC
Confidence 347899999775 77889999999999999854
No 227
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=20.13 E-value=1.5e+02 Score=31.83 Aligned_cols=111 Identities=18% Similarity=0.293 Sum_probs=60.5
Q ss_pred EEEEEecCCCcccc--ccc-ccccchHHHHHHHhhCCceEEEEecccchhhhhhcCchhHHHHHHHHhcccchh------
Q psy2375 252 LIMIVNCNLQRLDG--PVR-GNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQ------ 322 (929)
Q Consensus 252 li~vvn~N~~~idg--~v~-~~~~~~~~l~~~f~~~Gw~vi~v~~g~~~d~l~~~~~~~~l~~~~~~~~dg~~q------ 322 (929)
+.+|||+..+.-.. +.| |...-.+.|...|+..|+.|.... .-+...+++.|.+..+-+..
T Consensus 71 ~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~----------dlt~~em~~~l~~~~~~~h~~~d~~v 140 (305)
T 1f1j_A 71 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN----------DCSCAKMQDLLKKASEEDHTNAACFA 140 (305)
T ss_dssp EEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEE----------SCCHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred EEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEec----------CcCHHHHHHHHHHHHHhhcCCCCEEE
Confidence 67777776664221 111 111235779999999999987652 12445566666554432211
Q ss_pred ccccCCchhhHhhccCCChhHHHHHhhcCccccccCCCCC-CcHHHHHHHHHH--HHhCCCCCeEEEEeeecccCC
Q psy2375 323 NYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG-HDLRKIYSAFKM--AQKNKDKPTVLLIKSIKGYGL 395 (929)
Q Consensus 323 ~~~~~~g~~~r~~~fg~~~~~~~~v~~~~d~~i~~l~~dG-hD~~~v~~a~~~--a~~~~~~P~vI~~~T~KG~G~ 395 (929)
.+....|. ...++|. || -.+++|...|.. .....+||.|+++..=+|.-+
T Consensus 141 v~ilsHG~--~~~i~g~---------------------D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 193 (305)
T 1f1j_A 141 CILLSHGE--ENVIYGK---------------------DGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTEL 193 (305)
T ss_dssp EEEESCEE--TTEEECS---------------------SSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EEEecCCC--CCeEEec---------------------CCeEEHHHHHHHhhhccChhhcCCceEEEeccccCCcc
Confidence 12222332 1234444 33 245666655542 122358999999998877543
Done!