RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2375
(929 letters)
>gnl|CDD|236500 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.
Length = 891
Score = 1568 bits (4063), Expect = 0.0
Identities = 518/847 (61%), Positives = 664/847 (78%), Gaps = 5/847 (0%)
Query: 1 MKETTKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYIN 60
+ D D +ET+EW+ AL SVI+ EGP RA+YL++++++ G+++P T YIN
Sbjct: 5 SESQLNDIDPIETQEWLEALDSVIREEGPERAHYLLEQLLERAREKGVSLPASATTPYIN 64
Query: 61 TISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGF 120
TI + ++PG++++E ++S IRWNA A+V+RANK D LGGH+SSFAS A + E+GF
Sbjct: 65 TIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGF 124
Query: 121 NHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPK 180
NHF+RAP HGGDL++ QGH++PG+YARAFLEGRLTEEQ+ NFRQEVDG GLSSYPHP
Sbjct: 125 NHFFRAPNEPHGGDLVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPW 184
Query: 181 LMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISE 240
LMP FWQFPTVSMGLGP+ AI+QARFLKYL R + +T ++K+W GDGEMDEPES+
Sbjct: 185 LMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGA 244
Query: 241 ISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKL 300
IS+AAREKLDNLI ++NCNLQRLDGPVRGN KIIQELE F G GWNVIKVIW S WD L
Sbjct: 245 ISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPL 304
Query: 301 LKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTF 360
L D +G L ++M +T+DG+YQ Y++K+ ++R++FFGK+P+ ++ +MSD+DIW L
Sbjct: 305 LAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNR 364
Query: 361 GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIR 420
GGHD RK+Y+A+K A ++K +PTV+L K+IKGYG+G GE +N AH +KK+D +K R
Sbjct: 365 GGHDPRKVYAAYKAAVEHKGQPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFR 424
Query: 421 DFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAF 480
D +PI D +L +P+YKP ++SPEI+YL RK LGGYLP RR K E L +P L AF
Sbjct: 425 DRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKF-EPLEVPALSAF 483
Query: 481 KKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFS 540
+ +L+ + ER+ISTT A+VRILN +L+DK IG R+VPI+ DE+RTFGMEGLFRQIGI++
Sbjct: 484 EALLKGS-GEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYN 542
Query: 541 QVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFY 600
GQLY PVD+DQ++YY+E K+GQILQEGINEAG M SWIAAATSYST MIPF+ +Y
Sbjct: 543 PHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYY 602
Query: 601 SMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYD 660
SMFG QRIGDLAW AGD RARGFL+GGT+GRTT+NGEGLQHEDGHSH+LASTIPNC+ YD
Sbjct: 603 SMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYD 662
Query: 661 PTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHN 720
P FA+EVA+I+ GL M QE+VFYYITVMNENY P + +G E+GI+KG+Y L+
Sbjct: 663 PAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPAMPEGAEEGILKGMYKLETAE 722
Query: 721 NEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLH 779
+K K KVQL+GSG ILRE+L A++IL +++ + + VWS TSF LARDGQ+ ERWNMLH
Sbjct: 723 GKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLH 782
Query: 780 PTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRK 839
PT++ +V Y+T+ L+ + GP++ ATDYM+LFAEQ+RAF+P Y VLGTDGFG SDTR+
Sbjct: 783 PTEEPRVPYVTQVLKGAEGPVVAATDYMKLFAEQIRAFVP--GDYVVLGTDGFGRSDTRE 840
Query: 840 KLRDFFE 846
LR FFE
Sbjct: 841 ALRRFFE 847
>gnl|CDD|237267 PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1;
Provisional.
Length = 896
Score = 1343 bits (3477), Expect = 0.0
Identities = 457/842 (54%), Positives = 613/842 (72%), Gaps = 8/842 (0%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNF 66
D D ET EW+ AL +V+ GP RA YL+ ++++ G+ +P T Y+NTI +
Sbjct: 19 DIDPQETAEWLEALDAVVAHAGPERARYLLDRLLERAAARGIALPGLLTTPYVNTIPVDQ 78
Query: 67 DDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA 126
+PG++ +EE L ++IRWNA+A+V+RAN+ LGGH++S+AS A + E+GFNHF+R
Sbjct: 79 QPPYPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRG 138
Query: 127 PTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFW 186
+ GGDL+Y Q HSAPG+YARAFLEGRL+EEQ+ +FRQE+ G GLSSYPHP LMP FW
Sbjct: 139 RDDAGGGDLVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFW 198
Query: 187 QFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAR 246
QFPT SMG+GP+ AI+QARF++YL R + +T RK+W GDGEMDEPESI+ +S+AAR
Sbjct: 199 QFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAR 258
Query: 247 EKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306
E LDNL+ ++NCNLQRLDGPVRGN +IIQELEA F G GWNVIKV+W S WD L D
Sbjct: 259 EGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318
Query: 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLR 366
G L + +T+DG++Q +++ + + R++FFG+ P+L ++ +SDEDI L GGHD R
Sbjct: 319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPR 378
Query: 367 KIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLP 426
K+Y+A+ A ++K +PTV+L K+ KGYG+G GE R T H KK+D + +K+ RD +LP
Sbjct: 379 KVYAAYAAAVRHKGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLP 438
Query: 427 IPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEP 486
+ D +L +PFYKP+++SPE++YL R LGGYLP+RR + L +PPL AF +
Sbjct: 439 LSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAP-PLPVPPLSAFAQFALG 497
Query: 487 TLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLY 546
+++STT A+VR+L +L+DK +G R+VPI+ DE+RTFGM LFRQ+GI+S +GQLY
Sbjct: 498 A-GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLY 556
Query: 547 DPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQ 606
+P D ++YYRE K+GQIL+EGI EAG + SWIAAATSYS M+PF+ +YSMFG Q
Sbjct: 557 EPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQ 616
Query: 607 RIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHE 666
R+GDL W A D RARGFL+G T+GRTT+ GEGLQH+DGHSH+LASTIPNC YDP FA+E
Sbjct: 617 RVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYE 676
Query: 667 VAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKL 726
+A+I+ G+ M+ QEDVFYY+TVMNENY+ P L +G E+GI+KG+Y L
Sbjct: 677 LAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEEGILKGMYRLAAAAEAP--- 733
Query: 727 KVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQK 785
+VQL+GSGAILRE+L A+++L +W +D+ VWS TSFT L RDG ER N+L P ++ +
Sbjct: 734 RVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEAR 793
Query: 786 VAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFF 845
V Y+T+ L + GP++ ATDY+R EQ+RAF+P Y LGTDGFG SDTR LR FF
Sbjct: 794 VPYVTQCLAGTRGPVVAATDYVRAVPEQIRAFVP--ARYVTLGTDGFGRSDTRAALRRFF 851
Query: 846 EN 847
E
Sbjct: 852 EV 853
>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1)
component [Energy production and conversion].
Length = 887
Score = 1258 bits (3258), Expect = 0.0
Identities = 489/849 (57%), Positives = 642/849 (75%), Gaps = 9/849 (1%)
Query: 1 MKETTK-DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYI 59
M E+ D D +ET+EW+ AL+SVI+ EGP RA YL+++++++ + G+++P T YI
Sbjct: 1 MSESLLNDVDPIETQEWLDALESVIREEGPERAQYLLEQLLEYARKGGVSLPAGTTTDYI 60
Query: 60 NTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIG 119
NTI + ++PG++++E ++SLIRWNA A+V+RA+K LGGH++SFAS A + E+G
Sbjct: 61 NTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVG 120
Query: 120 FNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHP 179
FNHF+RA + GGDL++ QGH++PG+YARAFLEGRLTEEQ+ NFRQEVDG GLSSYPHP
Sbjct: 121 FNHFFRAKSEKDGGDLVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHP 180
Query: 180 KLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESIS 239
KLMP FWQFPTVSMGLGP+ AI+QARFLKYL AR + +T ++K+W GDGEMDEPES
Sbjct: 181 KLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRG 240
Query: 240 EISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDK 299
I+ AAREKLDNLI ++NCNLQRLDGPVRGN KIIQELE F G GWNVIKVIW WD+
Sbjct: 241 AITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDE 300
Query: 300 LLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLT 359
LL D G L+++M +T+DG+YQ +++K+ ++R++FFG++P+ ++ +M+D+DIW L
Sbjct: 301 LLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALN 360
Query: 360 FGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSI 419
GGHD K+Y+AFK AQ++K +PTV+L K+IKGYGLG E +N AH +KK+ +K
Sbjct: 361 RGGHDPEKVYAAFKKAQEHKGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEF 420
Query: 420 RDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEA 479
RD +P+ D+EL +P+Y ++SPE +YL R LGGYLP RR K L +P L
Sbjct: 421 RDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSD 480
Query: 480 FKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIF 539
F+ +L+ +ISTT A+VRILN +L+DK IG R+VPI+ DE+RTFGMEGLFRQIGI+
Sbjct: 481 FQALLKGQ--GEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIY 538
Query: 540 SQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTF 599
+ GQ Y P D+DQV+YY+E ++GQILQEGINEAG SWIAA TSYST MIPF+ +
Sbjct: 539 NPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY 598
Query: 600 YSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPY 659
YSMFG QRIGDL W AGD ARGFL+G T+GRTT+NGEGLQHEDGHSH+ A TIPNCI Y
Sbjct: 599 YSMFGFQRIGDLLWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISY 658
Query: 660 DPTFAHEVAIIIHHGLHCMI-SNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKN 718
DP FA+EVA+I+ GL M QE+VFYYIT+ NENY P + +G E+GIIKG+Y L+
Sbjct: 659 DPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEGAEEGIIKGIYKLET 718
Query: 719 HNNEKSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNM 777
+ K KVQL+GSGAILRE L A+++L +++ +++ +WS TSF LARDGQ ERWN+
Sbjct: 719 P-GGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNL 777
Query: 778 LHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDT 837
LHPT+ +V Y+ + L GP++ TDYM+LFAEQ+RA +P+ Y+VLGTDGFG SD+
Sbjct: 778 LHPTETPRVPYVAQVLNAD-GPVVAVTDYMKLFAEQIRAVVPQR--YRVLGTDGFGRSDS 834
Query: 838 RKKLRDFFE 846
R+ LR FFE
Sbjct: 835 RENLRRFFE 843
>gnl|CDD|233117 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
type. Most members of this family are pyruvate
dehydrogenase complex, E1 component. Note: this family
was classified as subfamily rather than equivalog
because it includes a counterexample from Pseudomonas
putida, MdeB, that is active as an E1 component of an
alpha-ketoglutarate dehydrogenase complex rather than a
pyruvate dehydrogase complex. The second pyruvate
dehydrogenase complex E1 protein from Alcaligenes
eutrophus, PdhE, complements an aceE mutant of E. coli
but is not part of a pyruvate dehydrogenase complex
operon, is more similar to the Pseudomonas putida MdeB
than to E. coli AceE, and may have also have a different
primary specificity.
Length = 885
Score = 1257 bits (3255), Expect = 0.0
Identities = 487/841 (57%), Positives = 641/841 (76%), Gaps = 5/841 (0%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNF 66
D D +ET+EW+ +L SV+ EGP RA YL+++++++ HG+ +P T YINTI
Sbjct: 5 DVDPIETQEWLESLDSVLAEEGPARARYLLEQLLEYAREHGVPIPAGTTTDYINTIPVEE 64
Query: 67 DDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA 126
+PG++++E ++S+IRWNA+A+V+RANK D LGGH+S++AS A + E+GFNHF+R
Sbjct: 65 QPAYPGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRG 124
Query: 127 PTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFW 186
+ GGDL++ QGH+APG+YARAFLEGRLTEEQ+ NFRQEV G GLSSYPHP LMP FW
Sbjct: 125 HSEGGGGDLVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFW 184
Query: 187 QFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAR 246
QFPTVSMGLGP+ AI+QARF+KYL R + +T ++K+W GDGEMDEPES I+ AAR
Sbjct: 185 QFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAR 244
Query: 247 EKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306
EKLDNL ++NCNLQRLDGPVRGN KIIQELE+ F G GWNVIKV+W S WD LL D +
Sbjct: 245 EKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTS 304
Query: 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLR 366
G+L K+M +T+DG+YQ Y++K+ ++R++FF + P+L ++ +MSD DIW L GGHD R
Sbjct: 305 GVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPR 364
Query: 367 KIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLP 426
K+Y+A+ AQ++K +PTV+L K+IKGYG+G E+RNTAH +KK++ +K+ RD +LP
Sbjct: 365 KVYAAYAAAQEHKGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELP 424
Query: 427 IPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEP 486
+ D+++ +P+Y P + SPE++YL R+ LGGYLP RR E L +P LE F +L+
Sbjct: 425 LSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTF-AEHLTVPALEFFGALLKG 483
Query: 487 TLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLY 546
+ ER++STT A+VRILN +L+DK IG R+VPI+ DE+RTFGMEGLFRQIGI+S GQ Y
Sbjct: 484 S-GEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTY 542
Query: 547 DPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQ 606
PVD D ++ Y+E K+GQILQEGINEAG M SWIAAATSY+T MIPF+ +YSMFG Q
Sbjct: 543 TPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQ 602
Query: 607 RIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHE 666
RIGDL W A D RARGFL+G T+GRTT+NGEGLQHEDGHS + A+TIPNCI YDP FA+E
Sbjct: 603 RIGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYE 662
Query: 667 VAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEKSKL 726
VA+I+ GL M QEDVFYY+TVMNENY P + +G E+GI+KGLY + EK+K
Sbjct: 663 VAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRFETSTEEKAKG 722
Query: 727 KVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTKKQK 785
VQL+GSGAI+R ++ A+++L +W + S VWS TSFT LARDG + ERWN+LHPT+ +
Sbjct: 723 HVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPR 782
Query: 786 VAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLRDFF 845
V+Y+ + L ++ P+I +TDY+R FAEQ+R ++P R Y LGTDGFG SDTR+ LR FF
Sbjct: 783 VSYVAQVLNEADAPVIASTDYVRAFAEQIRPYVP--RKYVTLGTDGFGRSDTRENLRHFF 840
Query: 846 E 846
E
Sbjct: 841 E 841
>gnl|CDD|132230 TIGR03186, AKGDH_not_PDH, alpha-ketoglutarate dehydrogenase.
Several bacterial species have a paralog to homodimeric
form of the pyruvate dehydrogenase E1 component (see
model TIGR00759), often encoded next to L-methionine
gamma-lyase gene (mdeA). The member from a strain of
Pseudomonas putida was shown to act on
alpha-ketobutyrate, which is produced by MdeA.This model
serves as an exception model to TIGR00759, as other
proteins hitting TIGR00759 should be identified as the
pyruvate dehydrogenase E1 component.
Length = 889
Score = 1050 bits (2717), Expect = 0.0
Identities = 428/845 (50%), Positives = 591/845 (69%), Gaps = 10/845 (1%)
Query: 7 DSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFKNTAYINTISNNF 66
D+D ET EW+ AL V+ G RA YL+ ++ R G+ P T Y+NTI+ +
Sbjct: 5 DTDPQETAEWLDALDGVVAHAGAERAQYLLAQLAAHAARLGLAPPAAGATPYVNTIAVDQ 64
Query: 67 DDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA 126
+ +PG++++EE L +++RWNA+A+V+RAN+ LGGH++S+AS A + E+GFNHF+RA
Sbjct: 65 EPPYPGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRA 124
Query: 127 PTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFW 186
+ GGDL+Y Q HSAPGVYARAFLEG L++ Q+ ++RQE+ G GL SYPHP LMP FW
Sbjct: 125 AGDASGGDLVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFW 184
Query: 187 QFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAR 246
QFPT SMG+GP+ AI+QARF++YL R + T RK+W GDGEMDEPESI +S+AAR
Sbjct: 185 QFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAAR 244
Query: 247 EKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQN 306
E+LDNL+ ++NCNLQRLDGPVRGN +II ELE+ F G GWNVIKV+W S WD L D
Sbjct: 245 ERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT 304
Query: 307 GILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLR 366
G L + T+DG++Q + + + + R FFG+ P L ++ +SDEDI L GGHD R
Sbjct: 305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDAR 364
Query: 367 KIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLP 426
K+Y+A+ A +++ +PTV+L K++KG+G+G G+ R T H KK+D + + + RD +LP
Sbjct: 365 KLYAAYDRAVRHEGRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLP 424
Query: 427 IPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILEP 486
+ D+++ + FYKP ++S E++YL R LGGYLP+RR + L +P L ++ +
Sbjct: 425 LSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALD 484
Query: 487 TLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLY 546
+++STT A VR+L +L+D +G R+VPI+ DE+RTFGM LFRQ+GI+S +GQ Y
Sbjct: 485 A-EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRY 543
Query: 547 DPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQ 606
+P D ++YYRE+ +GQIL+EGI+EAG + SWIAAATSYS + M+PF+ +YSMFG Q
Sbjct: 544 EPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQ 603
Query: 607 RIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHE 666
RIGDL W A D RARGFLIG TSG+TT+ GEGLQH+DG SH+ AST+PNC +DP FA+E
Sbjct: 604 RIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYE 663
Query: 667 VAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQ----EKGIIKGLYLLKNHNNE 722
VA+I+ G+ M+ Q D FYY+TV NENY+ P L + + +GI+KG+Y L
Sbjct: 664 VAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAALA 723
Query: 723 KSKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPT 781
+ +VQL+GSGAIL E+ A+++L +W ID+AVWS TSFT LARDG+ ER L
Sbjct: 724 AA--RVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRAAERAQRLGDA 781
Query: 782 KKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKL 841
++ ++ ++L + GP+I ATDY+R E +RA++P R Y LGTDGFG SDTR L
Sbjct: 782 ERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVP--RRYVTLGTDGFGRSDTRAAL 839
Query: 842 RDFFE 846
R FFE
Sbjct: 840 RAFFE 844
>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1
of E. coli PDC-like subfamily, TPP-binding module;
composed of proteins similar to the E1 component of the
Escherichia coli pyruvate dehydrogenase multienzyme
complex (PDC). PDC catalyzes the oxidative
decarboxylation of pyruvate and the subsequent
acetylation of coenzyme A to acetyl-CoA. The E1
component of PDC catalyzes the first step of the
multistep process, using TPP and a divalent cation as
cofactors. E. coli PDC is a homodimeric enzyme.
Length = 386
Score = 590 bits (1522), Expect = 0.0
Identities = 231/384 (60%), Positives = 296/384 (77%)
Query: 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDL 135
IE ++SLIRWNAMA+V RANK D +GGH+++FAS A + E+GFNHF+RA GGDL
Sbjct: 3 IERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL 62
Query: 136 IYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGL 195
+Y QGH++PG+YARAFLEGRLTEEQ+ NFRQEV G GLSSYPHP LMP FW+FPTVSMGL
Sbjct: 63 VYFQGHASPGIYARAFLEGRLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGL 122
Query: 196 GPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMI 255
GP+ AI+QARF +YL R + +T ++K+W GDGEMDEPES+ I +AAREKLDNLI +
Sbjct: 123 GPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFV 182
Query: 256 VNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMD 315
VNCNLQRLDGPVRGN KIIQELE F G GWNVIKVIW S WD+LL D G L++ M +
Sbjct: 183 VNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEE 242
Query: 316 TLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMA 375
T+DG+YQ ++K+ ++R++FFGK+P+L ++ ++SDED+W L GGHD RK+Y+A+K A
Sbjct: 243 TVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKA 302
Query: 376 QKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLPIPDSELSLV 435
++K KPTV+L K+IKGYGLG GE RN AH +KK+ +K++RD +P+ D +L
Sbjct: 303 VEHKGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPVSDEQLEEG 362
Query: 436 PFYKPSKNSPEIQYLKNCRKKLGG 459
P+YKP + S EI+YL R LGG
Sbjct: 363 PYYKPPEGSEEIKYLHERRHALGG 386
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 109 bits (274), Expect = 1e-24
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M KVP+IG++ EVEV +VK GDT++ DQ L+ VE++K +MEIPS GVV+EIKV
Sbjct: 1 MAIEFKVPDIGEVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKV 60
Query: 911 KVGDKISKDSQILILEE 927
KVGD +S + ++E
Sbjct: 61 KVGDTVSVGGLLAVIEA 77
Score = 105 bits (264), Expect = 2e-23
Identities = 41/72 (56%), Positives = 60/72 (83%)
Query: 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
+KVP+IG+++EVEV +VK+GDT++ DQSL+ VE++K +MEIPS GVV+EIKVKVGD
Sbjct: 122 VKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD 181
Query: 915 KISKDSQILILE 926
K+S S ++++E
Sbjct: 182 KVSVGSLLVVIE 193
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 108 bits (272), Expect = 3e-24
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M IKVP+IG EVEV+ ++VK+GD ++ +QSL+ VE +K SME+PS GVV+EIKV
Sbjct: 1 MAIEIKVPDIG-ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKV 59
Query: 911 KVGDKISKDSQILILEE 927
KVGDK+ + I+I E
Sbjct: 60 KVGDKVETGALIMIFES 76
Score = 97.4 bits (243), Expect = 8e-21
Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
+ VP+IG EVEV+ VMVK+GD ++ +QSL+ VE +K SME+P+ G V+EIKV VGD
Sbjct: 209 VNVPDIGG-DEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD 267
Query: 915 KISKDSQILILEEQ 928
K+ S I+ E +
Sbjct: 268 KVKTGSLIMRFEVE 281
Score = 96.6 bits (241), Expect = 2e-20
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
K + VP+IG EVEV+ ++VK+GDT++ +QSL+ VE +K SME+P+ G V+EIKV V
Sbjct: 106 KDVHVPDIGS-DEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNV 164
Query: 913 GDKISKDSQILILE 926
GDK+S S I++ E
Sbjct: 165 GDKVSTGSLIMVFE 178
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 98.8 bits (246), Expect = 2e-21
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
IKVP+IGD E EV V+VK GD ++ QSL+ +ES+K SME+PSS G+++EIKVKV
Sbjct: 1 TEIKVPDIGDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60
Query: 913 GDKISKDSQILILE 926
GD + I LE
Sbjct: 61 GDTLPVGGVIATLE 74
Score = 98.4 bits (245), Expect = 3e-21
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
+ VP+IGD+ +V V V+VK+GDT+ DQSL+ +ES+K SME+P+ +GVV+ +KVKVGD
Sbjct: 119 VTVPDIGDIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD 178
Query: 915 KISKDSQILILE 926
+ IL L
Sbjct: 179 SVPTGDLILTLS 190
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 83.6 bits (208), Expect = 1e-19
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 853 KIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911
IK+P++G+ ++E + +VK GD+++ L VE++K ++E+ + GV+ +I V+
Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60
Query: 912 VGDKISKDSQILIL 925
GD + I ++
Sbjct: 61 EGDTVPVGQVIAVI 74
Score = 28.9 bits (66), Expect = 2.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 898 PSSHNGVVREIKVKVGDKISKDSQILILE 926
S G + E VK GD + + + +E
Sbjct: 10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVE 38
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine residue
binds biotin in one group and lipoic acid in the other.
Note that the HMM does not currently recognise the
Glycine cleavage system H proteins.
Length = 73
Score = 81.9 bits (203), Expect = 4e-19
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
IK P IG+ + + +VK+GD +K Q L VE+ K+ MEIP+ GVV+EI VK
Sbjct: 1 TEIKSPMIGESVKEGTAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKE 60
Query: 913 GDKISKDSQILIL 925
GD + + +
Sbjct: 61 GDTVEVGDPLAKI 73
Score = 33.3 bits (77), Expect = 0.049
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 892 KVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
K M S G E VKVGDK+ + +E
Sbjct: 4 KSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVE 37
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 85.6 bits (213), Expect = 2e-18
Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 84 IRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR---APTHSHGGD-LIYIQ 139
IR ++ +V +A GH S A IL + + + A D + +
Sbjct: 3 IRRLSIDMVQKAG------SGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSK 56
Query: 140 GHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPL- 198
GH++P +YA L G L EE + FRQ G L +P L P V + G L
Sbjct: 57 GHASPALYAVLALAGYLPEEDLKTFRQ--LGSRLPGHPEYGLTP------GVEVTTGSLG 108
Query: 199 ----TAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISE-ISMAAREKLDNLI 253
A+ A K L + ++++L GDGE+ E S+ E S A KLDNLI
Sbjct: 109 QGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQE-GSVWEAASFAGHYKLDNLI 160
Query: 254 MIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
IV+ N ++DGP ++L F GWNVI+V
Sbjct: 161 AIVDSNRIQIDGPTDDILF-TEDLAKKFEAFGWNVIEV 197
Score = 47.1 bits (113), Expect = 1e-05
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 9/56 (16%)
Query: 348 EEMSDEDI--------WN-LTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
+ + ED+ WN + GHD+ +I +A + A+K+K KPT+++ K+IKG G
Sbjct: 176 DILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKG 231
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 88.3 bits (220), Expect = 2e-18
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 851 MKKIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909
M K+P++G ++E E+ +VK+GDT+K Q L VE++K ++EIPS G V ++
Sbjct: 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60
Query: 910 VKVGDKISKDSQILILEE 927
V+ GD + S I ++EE
Sbjct: 61 VEEGDVVPVGSVIAVIEE 78
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 85.9 bits (213), Expect = 1e-17
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 851 MKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909
M IK+P++G+ ++E + + K+GD +K L+ VE++K +ME+P+ GV+ +I
Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 910 VKVGDKISKDSQILILEE 927
V+ GD + + I +EE
Sbjct: 61 VEEGDTVPVGAVIARIEE 78
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 77.5 bits (192), Expect = 1e-14
Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 41/227 (18%)
Query: 84 IRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR-APTHSH--GGD-LIYIQ 139
IR ++ V +AN GH A I + + F R P + D +
Sbjct: 15 IRVLSIDAVQKAN------SGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSA 68
Query: 140 GHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSS-YP-HPKLMPKFWQFPTVSMGLG 196
GH + +Y+ L G L+ + + NFRQ L S P HP+ + P V G
Sbjct: 69 GHGSMLLYSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPE----YGHTPGVETTTG 118
Query: 197 PL-----TAIHQA---RFLKYLHARKITNTINRKIWILCGDGEMDEPESISE-ISMAARE 247
PL A+ A ++L L R + ++ ++LCGDG++ E E S+A
Sbjct: 119 PLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLME-GISHEACSLAGHL 177
Query: 248 KLDNLIMIVNCN-LQRLDGPVRG--NSKIIQELEAHFYGVGWNVIKV 291
KL NLI+I + N + +DGP G + + EA+ GW+VI+V
Sbjct: 178 KLGNLIVIYDDNRIS-IDGPTEGWFTEDVKKRFEAY----GWHVIEV 219
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate
binding domain. This family includes transketolase
enzymes EC:2.2.1.1. and also partially matches to
2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4.
Both these enzymes utilise thiamine pyrophosphate as a
cofactor, suggesting there may be common aspects in
their mechanism of catalysis.
Length = 333
Score = 69.7 bits (171), Expect = 1e-12
Identities = 57/225 (25%), Positives = 89/225 (39%), Gaps = 35/225 (15%)
Query: 84 IRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGGDLIYIQ 139
IR AM V +A GH + +A I E+ F R P + +
Sbjct: 9 IRALAMDAVEKAG------SGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSN 62
Query: 140 GHSAPGVYARAFLEG-RLTEEQMINFRQ---EVDGYGLSSYPHPKLMPKFWQFPTVSMGL 195
GH++ +Y+ L G L+ E + +FRQ + G+ P+F V +
Sbjct: 63 GHASMLLYSLLHLTGYDLSMEDLKSFRQLGSKTPGH-----------PEFGHTAGVEVTT 111
Query: 196 GPL-----TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAARE 247
GPL A+ A L A R + ++ ++ GDG + E S S+A
Sbjct: 112 GPLGQGIANAVGMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHL 171
Query: 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292
KL NLI + N +DG + ++ F GW+VI+V
Sbjct: 172 KLGNLIAFYDDNRISIDGETEISFT--EDTAKRFEAYGWHVIEVE 214
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
transport and metabolism].
Length = 243
Score = 64.3 bits (157), Expect = 3e-11
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 18/209 (8%)
Query: 90 ALVIRANKIDSSLG---GHLSSFASLAHILEIGFNH---FWRAPTHSHGGD-LIYIQGHS 142
A IR N + GH+ S+ IL + + G D I +GH+
Sbjct: 14 AREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHA 73
Query: 143 APGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIH 202
AP +YA +G EE++ FR+ G L +P P + T S+G G A+
Sbjct: 74 APALYATLAEKGYFPEEELETFRR--IGSRLPGHPERNKTP-GVEVSTGSLGQGLSVAVG 130
Query: 203 QARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNLQR 262
A K+ + +++++ GDGE+DE + AA KLDNLI IV+ N +
Sbjct: 131 MA------LGAKLKGS-PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQ 183
Query: 263 LDGPVRGNSKIIQELEAHFYGVGWNVIKV 291
LDG + L + GW VI+V
Sbjct: 184 LDGETE-EIMPKEPLADKWEAFGWEVIEV 211
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 63.3 bits (155), Expect = 3e-10
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
IKVP + + ++E ++T K GD +K D+ L+ +E++KV +E+P+ GV+ EI + G
Sbjct: 5 IKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG 64
Query: 914 DKISKDSQILILEE 927
D ++ + ++E
Sbjct: 65 DTVTVGQVLGRIDE 78
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 63.4 bits (155), Expect = 4e-10
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 31/234 (13%)
Query: 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR-APTHSH 131
+KI++ L + IR+ +M V +AN GH + A I + + F + P +
Sbjct: 2 MMKIDKLLANAIRFLSMDAVQKAN------SGHPGAPMGAADIAYVLWTRFLKHNPDNPK 55
Query: 132 GGD---LIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFW 186
+ + GH + +Y+ L G L+ E + NFRQ S P HP+ +
Sbjct: 56 WINRDRFVLSAGHGSMLLYSLLHLTGYDLSLEDLKNFRQ-----LGSKTPGHPE----YG 106
Query: 187 QFPTVSMGLGPL-----TAIHQA---RFLKYLHARKITNTINRKIWILCGDGEMDEPESI 238
P V GPL A+ A + L L R + ++ ++L GDG + E S
Sbjct: 107 HTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSH 166
Query: 239 SEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292
S+A KL LI++ + N +DG + +++ F GWNVI+VI
Sbjct: 167 EAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF--TEDVAKRFEAYGWNVIRVI 218
Score = 45.3 bits (108), Expect = 1e-04
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 356 WN--LTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
WN GHDL I A + A+ + DKPT++++K+I G G
Sbjct: 212 WNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTIIGKG 252
Score = 34.5 bits (80), Expect = 0.33
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 35/159 (22%)
Query: 699 PGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWS 758
P L++ +G+ KG Y+LK+ + V LI +G+ + + + L+ I V S
Sbjct: 524 PVLERTDLEGVAKGAYVLKD--SGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581
Query: 759 ATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIV----ATDYMRLFAEQV 814
SF L KQ Y L ++ + + +
Sbjct: 582 MPSFELFE----------------KQDEEYRESVLPGAVTARVAIEAGSALGWYKYV--- 622
Query: 815 RAFIPKGRIYKVLGTDGFGCSDTRKKLRDFF----ENII 849
G V+G D FG S +L F EN++
Sbjct: 623 ------GLDGAVIGMDSFGASAPGDELFKEFGFTVENVV 655
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing carboxylation,
decarboxylation, or transcarboxylation. During this
process, biotin is covalently attached to a specific
lysine.
Length = 67
Score = 56.3 bits (137), Expect = 4e-10
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILI 924
V V+VK GD ++ Q L V+E+ K+ E+ + GVV+EI VK GD++ Q+L+
Sbjct: 10 VVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAG-QLLV 65
Score = 35.9 bits (84), Expect = 0.006
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 896 EIPSSHNGVVREIKVKVGDKISKDSQILILE 926
E+ + G V ++ VK GDK+ + +LE
Sbjct: 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 59.8 bits (145), Expect = 3e-09
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
IKVP + + ++E V+ K+GDT+K D++++ +E++KV +E+PS +GV++EI K G
Sbjct: 3 IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62
Query: 914 DKISKDSQILILEE 927
D + + ILEE
Sbjct: 63 DTVESGQVLAILEE 76
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 55.1 bits (133), Expect = 6e-09
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
V++GDT+K Q+L ++E+ K+ EI + +GVV+EI VK GD + + ++E
Sbjct: 84 PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139
Score = 32.0 bits (73), Expect = 0.62
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 887 VVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+ ++ S G V + V+VGD + + I+E
Sbjct: 63 APAAAAGGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 55.6 bits (135), Expect = 9e-08
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
V V VK GD +K ++LV+E+ K+ EI + +G V+EI VK GD+++ +L+
Sbjct: 533 VVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPG-DVLME 589
Score = 31.0 bits (71), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 897 IPSSHNGVVREIKVKVGDKISKDSQILILE 926
+ S G V ++KVK GDK+ +L+LE
Sbjct: 525 VTSPMPGTVVKVKVKEGDKVKAGDTVLVLE 554
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 55.1 bits (133), Expect = 9e-08
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 852 KKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
K+IKVP +GD +SE V K+GD +K D+ + ++E++KVS++I + +GV+ +I
Sbjct: 44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFA 103
Query: 911 KVGDKISKDSQILILEE 927
+ GD + + + ++
Sbjct: 104 EEGDTVEVGAPLSEIDT 120
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 51.4 bits (123), Expect = 2e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI 916
++V+ G +K+ Q LL++E+ K+ EIP+ +GVV++I VK GD +
Sbjct: 98 ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTV 143
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 54.0 bits (130), Expect = 3e-07
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 28/221 (12%)
Query: 89 MALVIRA---NKIDSSLGGHLSSFASLAHILEIGFNHFWR-APTHSHGGD---LIYIQGH 141
+A IR + I + GH + A I E+ + F + PT+ + + GH
Sbjct: 3 LANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGH 62
Query: 142 SAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFWQFPTVSMGLGPL- 198
+ +Y+ L G L+ E + FRQ S P HP+ V GPL
Sbjct: 63 GSMLLYSLLHLTGYDLSIEDLKQFRQ-----LHSKTPGHPEFGHT----AGVEATTGPLG 113
Query: 199 ----TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDN 251
A+ A K L A + ++ ++ GDG + E S S+A KL
Sbjct: 114 QGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGK 173
Query: 252 LIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292
LI++ + N +DG V G+ +++ F GW V++V
Sbjct: 174 LIVLYDSNRISIDGAVDGSFT--EDVAKRFEAYGWEVLEVE 212
Score = 39.7 bits (93), Expect = 0.007
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
GHDL I +A + A+ +KDKPT++ + + G+G
Sbjct: 214 GHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFG 246
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent carboxylases/decarboxylases,
the dihydrolipoyl acyltransferase component (E2) of
2-oxo acid dehydrogenases, and the H-protein of the
glycine cleavage system (GCS). These domains transport
CO2, acyl, or methylamine, respectively, between
components of the complex/protein via a biotinyl or
lipoyl group, which is covalently attached to a highly
conserved lysine residue.
Length = 73
Score = 48.2 bits (115), Expect = 3e-07
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 854 IIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
I +P++ L + V + K+GD +K L +E+ K + ++ + +G V+++ VK
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60
Query: 913 GDKISKDSQILI 924
G K+ D L+
Sbjct: 61 GTKVEGD-TPLV 71
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 51.9 bits (124), Expect = 1e-06
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 851 MKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909
M + +K+P +G+ ++E V++ + +GDT++ D+ LL V ++KV EIPS GV+ EI+
Sbjct: 1 MAESVKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIR 60
Query: 910 VKVGDKISKDSQILILEE 927
D + + I+ E
Sbjct: 61 APEDDTVEVGGVLAIIGE 78
Score = 47.3 bits (112), Expect = 3e-05
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK---- 909
+K+P +G+ ++E V++ + +GDT+++D+ LL V ++KV EIPS G + EI+
Sbjct: 129 VKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPED 188
Query: 910 --VKVGDKISK 918
V+VG ++
Sbjct: 189 DTVEVGTVLAI 199
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 50.1 bits (120), Expect = 5e-06
Identities = 81/336 (24%), Positives = 128/336 (38%), Gaps = 98/336 (29%)
Query: 73 NIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSS---FASLAHILEIGFNHFWRAPTH 129
+ I+E + IR + LV +AN GH + A +AHIL +
Sbjct: 2 DGAIDEKCANEIRCLSADLVQKANS------GHPGAPMGMAPIAHILWSEVMKYNPKDPR 55
Query: 130 SHGGD-LIYIQGHSAPGVYARAFLEGR-LTEEQMINFRQEVDGYGLSSYP-HPKLMPKFW 186
D + GH++ +Y+ L G L+ E + NFRQ S P HP+
Sbjct: 56 WINRDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQLG-----SRTPGHPE----RH 106
Query: 187 QFPTVSMGLGPL-----TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESI 238
P V + GPL A+ A K+L A R + ++++CGDG + E S
Sbjct: 107 ITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQ 166
Query: 239 SEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWD 298
+S+A L+ LI++ + N +DG + +++E + GW+VI+V
Sbjct: 167 EALSLAGHLGLEKLIVLYDDNKITIDGNT--DLSFTEDVEKKYEAYGWHVIEV------- 217
Query: 299 KLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL 358
NG N+DF L K IEE
Sbjct: 218 ------DNG--------------------NTDF---------DGLRKAIEE--------- 233
Query: 359 TFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
A+K+K KP ++++K+ GYG
Sbjct: 234 ----------------AKKSKGKPKLIIVKTTIGYG 253
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 49.2 bits (118), Expect = 7e-06
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 849 IHMKKIIKVPNIG-DLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVRE 907
I I +P G ++E +V+ +V+ GD ++ LL VE++K++ E+ + G +R
Sbjct: 2 ITP---ITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRR 58
Query: 908 IKVKVGD 914
+ G+
Sbjct: 59 QVAQEGE 65
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 48.8 bits (117), Expect = 1e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
V+V G T+ LL++E+ K+ EI ++ G VR I VK GD ++ +L L
Sbjct: 538 VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 48.6 bits (116), Expect = 1e-05
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQIL 923
V V G T+ + LL++E+ K+ EI ++ G VREI VKVGD +S Q+L
Sbjct: 531 VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVG-QVL 582
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 48.1 bits (115), Expect = 2e-05
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
V V VK GD +K L V+E+ K+ I + +G V+E+ VK GD+I D L++
Sbjct: 1090 VVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQI--DGGDLLVV 1146
Score = 32.3 bits (74), Expect = 1.4
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 854 IIKVPNIGDLSEVEVSTVMVKIGDT---IKI-DQSLLVVESEKVSMEIPSSHN------- 902
IIK+ IG+ E + TV ++ IK+ D+S V S V+ N
Sbjct: 1029 IIKLQAIGEPDEKGMRTVYFELNGQPREIKVKDRS---VGSSVVARRKADPGNPGHIGAP 1085
Query: 903 --GVVREIKVKVGDKISKDSQILILE 926
GVV E+KVK GDK+ K + ++E
Sbjct: 1086 MPGVVVEVKVKKGDKVKKGDVLAVIE 1111
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea [Central intermediary
metabolism, Nitrogen metabolism].
Length = 1201
Score = 48.1 bits (115), Expect = 2e-05
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
V+V++GD ++ Q L+++E+ K+ M + + G V +I + GD + + +LE
Sbjct: 1146 VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 43.6 bits (104), Expect = 8e-05
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
V++GDT+K Q+L ++E+ KV EI + +GVV EI V+ G
Sbjct: 102 VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ 143
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 46.3 bits (109), Expect = 8e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
+ + V GD +K Q++LV+E+ K+ EI + NGVV EI + GDK++ Q+LI E
Sbjct: 536 IIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTP-GQVLIRVE 594
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 45.9 bits (110), Expect = 1e-04
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSME--IPSSHNGVVREIKVKVGDKISKDSQILIL 925
V TV+VK GD +K L V+E+ K ME I + +G V+ + VK GD++ ++ L
Sbjct: 1087 VVTVLVKEGDEVKAGDPLAVIEAMK--METTITAPVDGTVKRVLVKAGDQVEAGDLLVEL 1144
Query: 926 EE 927
E
Sbjct: 1145 EP 1146
Score = 30.9 bits (71), Expect = 3.8
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 854 IIKVPNIGDLSEVEVSTVMVKI-GD--TIKI-DQSL--LVVESEKV----SMEIPSSHNG 903
IIK+ IG+ E + TV ++ G +++ D+S+ V EK + + G
Sbjct: 1026 IIKLEAIGEPDEDGMRTVYFELNGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPG 1085
Query: 904 VVREIKVKVGDKISKDSQILILE 926
V + VK GD++ + ++E
Sbjct: 1086 SVVTVLVKEGDEVKAGDPLAVIE 1108
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 44.7 bits (105), Expect = 2e-04
Identities = 20/70 (28%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 857 VPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK 915
VP++G+ +++ ++T + K G+ ++ D+++ +E++KV+++I S +GV++E VK GD
Sbjct: 96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT 155
Query: 916 ISKDSQILIL 925
+ +++ I+
Sbjct: 156 VEPGTKVAII 165
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 70
Score = 39.4 bits (92), Expect = 4e-04
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 871 VMVKIGDTIKIDQSLLVVESEKVSMEIP--SSHNGVVREIKVKVGDKISKDSQILILE 926
++VK+GDT++ Q ++++ES K MEIP + G V++I V+ GD +++ +L +E
Sbjct: 15 IVVKVGDTVEEGQDVVILESMK--MEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70
Score = 29.0 bits (65), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 895 MEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
++ +S G V +I VKVGD + + ++ILE
Sbjct: 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 41.3 bits (98), Expect = 4e-04
Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 20/115 (17%)
Query: 569 GINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGT 628
GI E +G A + P + F R A IR+ G G
Sbjct: 21 GIAEQAMVGFAAGLALHG------LRPVVEIFFTF-FDR----AKDQ--IRSAG-ASGNV 66
Query: 629 SGRTTINGEGLQHEDGHSH------VLASTIPNCIPYDPTFAHEVAIIIHHGLHC 677
+G G EDG +H L IP P+ E ++ +
Sbjct: 67 PVVFRHDGGGGVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRD 121
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 43.8 bits (104), Expect = 5e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSME--IPSSHNGVVREIKVKVGDKISKDSQILIL 925
V +V VK G + L+V+E+ K ME + + +GVV ++ V GD+++ + ++
Sbjct: 586 VVSVAVKEGQEVSAGDLLVVLEAMK--MENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEF 643
Query: 926 EE 927
EE
Sbjct: 644 EE 645
>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Provisional.
Length = 71
Score = 39.0 bits (91), Expect = 5e-04
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIP--SSHNGVVREIKVKVGDKI 916
V V+V GD I +L+++ES K MEIP + G V ++ V VGD I
Sbjct: 13 VLEVVVNEGDQIGKGDTLVLLESMK--MEIPVLAEVAGTVSKVSVSVGDVI 61
Score = 29.8 bits (67), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 890 SEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+E V EI +S V E+ V GD+I K +++LE
Sbjct: 2 AEDVRAEIVAS----VLEVVVNEGDQIGKGDTLVLLE 34
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 43.7 bits (103), Expect = 5e-04
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+ V V G + L+V+E+ K+ I + +G ++E+ VK G++I +L+LE
Sbjct: 1085 IIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 43.1 bits (102), Expect = 6e-04
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 140 GHSAPGVYARAFLEG--RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPT--VSMGL 195
GH YA L G + E + FRQ +G + HP+ F T + +
Sbjct: 55 GHGCMLQYALLHLAGYDSVQMEDLKQFRQ----WGSRTPGHPE------NFETPGIEVTT 104
Query: 196 GPL-----TAIHQARFLKYLHAR--KITNTI-NRKIWILCGDGEMDEPESISEISMAARE 247
GPL A+ A K+L AR K + I + + + GDG E S S+A
Sbjct: 105 GPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHW 164
Query: 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQ--ELEAHFYGVGWNVIKV 291
L LI++ + N +DG ++I +++ + +GW+ I V
Sbjct: 165 GLGKLIVLYDDNHISIDGD----TEIAFTEDVDKRYEALGWHTIWV 206
Score = 33.5 bits (77), Expect = 0.57
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 361 GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G D +I +A K A+ DKPT++ + + GYG
Sbjct: 209 GNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed.
Length = 663
Score = 41.9 bits (98), Expect = 0.002
Identities = 60/224 (26%), Positives = 86/224 (38%), Gaps = 38/224 (16%)
Query: 89 MALVIRANKIDS---SLGGHLSSFASLAHILEIGFNHFWR-----APTHSHGGD---LIY 137
+A IRA +D+ + GH + +A I E+ WR P + D +
Sbjct: 7 LANAIRALSMDAVQKAKSGHPGAPMGMADIAEV----LWRDFLNHNPQNPSWADRDRFVL 62
Query: 138 IQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKL--MPKFWQFPTVSMG 194
GH + +Y+ L G L E++ NFRQ H K P+ V
Sbjct: 63 SNGHGSMLIYSLLHLTGYDLPMEELKNFRQL----------HSKTPGHPEVGYTAGVETT 112
Query: 195 LGPL-----TAIHQARFLKYLHA---RKITNTINRKIWILCGDGEMDEPESISEISMAAR 246
GPL A+ A K L A R + ++ + GDG M E S S+A
Sbjct: 113 TGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT 172
Query: 247 EKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIK 290
KL LI + N +DG V G + F GW+VI+
Sbjct: 173 LKLGKLIAFYDDNGISIDGHVEG--WFTDDTAMRFEAYGWHVIR 214
Score = 34.6 bits (79), Expect = 0.29
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 356 WNLTFG--GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
W++ G GHD I A + A+ DKP++L+ K+I G+G
Sbjct: 210 WHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFG 250
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system (GCS)
found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of 4
different components (P-, H-, T- and L-proteins) which
catalyzes the oxidative cleavage of glycine. The
H-protein shuttles the methylamine group of glycine from
the P-protein (glycine dehydrogenase) to the T-protein
(aminomethyltransferase) via a lipoyl group, attached to
a completely conserved lysine residue.
Length = 96
Score = 36.4 bits (85), Expect = 0.008
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 859 NIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD---K 915
+GD+ VE+ ++G +K VES K + ++ S +G V E+ + D
Sbjct: 27 LLGDIVFVEL----PEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNPEL 82
Query: 916 ISKD 919
I+ D
Sbjct: 83 INSD 86
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 36.7 bits (85), Expect = 0.012
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
+ V+V +GD + +Q LL++E+ K+ EI +S G V I V G
Sbjct: 72 ILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPG 117
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP22, 24 and 25-like proteins;
longer isoforms of these proteins contain an additional
N-terminal pleckstrin homology (PH) domain. ARHGAP25
(KIA0053) has been identified as a GAP for Rac1 and
Cdc42. Short isoforms (without the PH domain) of
ARHGAP24, called RC-GAP72 and p73RhoGAP, and of
ARHGAP22, called p68RacGAP, has been shown to be
involved in angiogenesis and endothelial cell capillary
formation. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 199
Score = 37.0 bits (86), Expect = 0.020
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 501 RILNTILRDKNIGNRVVPILVDESRTF----GM--EGLFRQIGIFSQVGQLYDPVD 550
R+ +T+ ++ G R+VPILV++ F G+ EGLFR G + V QL D D
Sbjct: 6 RLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFD 61
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 38.1 bits (89), Expect = 0.023
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
GHD + I A AQ KDKP++++ ++I G+G
Sbjct: 218 GHDPQAIKEAILEAQSVKDKPSLIICRTIIGFG 250
Score = 33.9 bits (78), Expect = 0.50
Identities = 59/236 (25%), Positives = 88/236 (37%), Gaps = 43/236 (18%)
Query: 77 EEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFN-HFWRAPTHSHGGD- 134
+ L + IR +M V +AN GH + +A I E+ + PT+ D
Sbjct: 4 RKDLANAIRALSMDAVQKANS------GHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDR 57
Query: 135 --LIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKL--MPKFWQFP 189
I GH++ +Y+ L G L E++ NFRQ H K P+ P
Sbjct: 58 DRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQL----------HSKTPGHPEIGYTP 107
Query: 190 TVSMGLGPL---------TAIHQ----ARFLKYLHARKITNTINRKIWILCGDGEMDEPE 236
V GPL AI + A+F + H ++ ++ GDG + E
Sbjct: 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGH-----EIVDHYTYVFMGDGCLMEGI 162
Query: 237 SISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVI 292
S S+A L LI + N +DG G + F W+VI I
Sbjct: 163 SHEVCSLAGTLGLGKLIGFYDHNGISIDGETEG--WFTDDTAKRFEAYHWHVIHEI 216
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 36.5 bits (85), Expect = 0.024
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 24/121 (19%)
Query: 192 SMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDN 251
+MG G AI A +R + + GDG + E++ A R L
Sbjct: 47 AMGYGLPAAIGAALAAP-----------DRPVVCIAGDGGFMM--TGQELATAVRYGL-P 92
Query: 252 LIMIVNCN--------LQRLDGPVRGNSKIIQE--LEAHFYGVGWNVIKVIWSSSWDKLL 301
+I++V N Q R + + A G ++V + L
Sbjct: 93 VIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLEAAL 152
Query: 302 K 302
Sbjct: 153 A 153
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 36.0 bits (83), Expect = 0.076
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
VK+GD ++ Q + ++E+ K+ EI + +G + EI + G +S D+ + ++E
Sbjct: 220 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273
>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. This model is designed to identify biotin
carboxyl carrier protein as a peptide of acetyl-CoA
carboxylase. Scoring below the trusted cutoff is a
related protein encoded in a region associated with
polyketide synthesis in the prokaryote Saccharopolyspora
hirsuta, and a reported chloroplast-encoded biotin
carboxyl carrier protein that may be highly derived from
the last common ancestral sequence. Scoring below the
noise cutoff are biotin carboxyl carrier domains of
other enzymes such as pyruvate carboxylase.The gene name
is accB or fabE [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 156
Score = 34.8 bits (80), Expect = 0.081
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
V++GD +K Q + +VE+ K+ EI + G V EI V+ G + ++++E
Sbjct: 103 VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 35.5 bits (82), Expect = 0.13
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 863 LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKI 916
++E E+ VK GD ++ Q L V+S+K ++EI S + G V +I GD +
Sbjct: 10 IAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIV 63
>gnl|CDD|200024 TIGR00527, gcvH, glycine cleavage system H protein. This model
represents the glycine cleavage system H protein, which
shuttles the methylamine group of glycine from the P
protein to the T protein. The mature protein is about
130 residues long and contains a lipoyl group covalently
bound to a conserved Lys residue. The genome of Aquifex
aeolicus contains one protein scoring above the trusted
cutoff and clustering with other bacterial H proteins,
and four more proteins clustering together and scoring
below the trusted cutoff; it seems doubtful that all of
these homologs are authentic H protein. The Chlamydial
homolog of H protein is nearly as divergent as the
Aquifex outgroup, is not accompanied by P and T
proteins, is not included in the seed alignment, and
consequently also scores below the trusted cutoff
[Energy metabolism, Amino acids and amines].
Length = 128
Score = 33.3 bits (76), Expect = 0.21
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 860 IGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREI 908
+GD+ VE+ V G + +SL VES K + +I + +G V E+
Sbjct: 35 LGDIVFVELPEV----GAEVAAGESLGSVESVKAASDIYAPVDGTVVEV 79
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 34.7 bits (81), Expect = 0.28
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTA---HNIKKID 412
GHDL + K A K+ P +L + + KG G + A H + K D
Sbjct: 215 GHDLDALIETLKNA-KDLKGPVLLHVVTKKGKG---YAPAEADPIKYHGVGKFD 264
>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein. This is a family of
glycine cleavage H-proteins, part of the glycine
cleavage multienzyme complex (GCV) found in bacteria and
the mitochondria of eukaryotes. GCV catalyzes the
catabolism of glycine in eukaryotes. A lipoyl group is
attached to a completely conserved lysine residue. The H
protein shuttles the methylamine group of glycine from
the P protein to the T protein.
Length = 122
Score = 31.9 bits (73), Expect = 0.47
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 861 GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK---IS 917
GDL VE+ V G +K +SL VES K + E+ + +G V E+ K+ D I+
Sbjct: 31 GDLVFVELPEV----GTEVKKGESLGAVESVKAASEVYAPVSGEVVEVNEKLEDNPGLIN 86
Query: 918 KD 919
KD
Sbjct: 87 KD 88
>gnl|CDD|235379 PRK05261, PRK05261, putative phosphoketolase; Provisional.
Length = 785
Score = 33.6 bits (78), Expect = 0.52
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 131 HGGDLIYIQG--HSAPGVYARAFLEGRLTE 158
+ ++IYI G H P + A A+LEG +E
Sbjct: 72 YDLNMIYITGPGHGGPAMVANAYLEGTYSE 101
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 32.5 bits (75), Expect = 0.56
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGL 395
GH++ + K K+ P +L + + KG G
Sbjct: 163 GHNIEALIKVLKEV-KDLKGPVLLHVVTKKGKGY 195
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 33.3 bits (77), Expect = 0.67
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421
GH+L ++ K A K+ P +L + + KG G + E I + G+
Sbjct: 252 GHNLEELIPTLKNA-KDLKGPVLLHVVTKKGKGY-KPAEED-------PIKYHGVG---- 298
Query: 422 FLKLPIPDSELSLVPFYKPSKNS 444
P E KPS S
Sbjct: 299 ----PFDPIETGQSKKSKPSAPS 317
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 32.3 bits (74), Expect = 0.80
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 505 TILRDKNIGNRVVPILVDESRTF------GMEGLFRQ---IGIFSQVGQLY---DPVDKD 552
L++KN +P +V E+ + EG+FR+ + +V Q Y +PVD D
Sbjct: 11 QFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFD 70
Query: 553 QV 554
Q
Sbjct: 71 QY 72
>gnl|CDD|223583 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding)
[Amino acid transport and metabolism].
Length = 131
Score = 31.1 bits (71), Expect = 0.89
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 860 IGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD---KI 916
+GD+ VE+ ++G +K +SL VVES K + ++ + +G V E+ + D I
Sbjct: 38 LGDIVFVEL----PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELI 93
Query: 917 SKD 919
+ D
Sbjct: 94 NSD 96
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 30.2 bits (69), Expect = 2.4
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 220 NRKIWILCGDGE--MDEPESISEISMAAREKLDNLIMIVN 257
+R + + GDG M ++ E++ A R L ++++N
Sbjct: 46 DRPVVAIAGDGGFQM----NLQELATAVRYNLPITVVVLN 81
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 30.8 bits (70), Expect = 2.8
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 104 GHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMIN 163
GH+ SFA L+ F G +++ GHS G+ A +L
Sbjct: 81 GHVDSFADYVDDLD----AFVETIAEPDPGLPVFLLGHSMGGLIALLYLA---------R 127
Query: 164 FRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIH 202
+ +DG LSS P L + + L L I
Sbjct: 128 YPPRIDGLVLSS-PALGLGGAILRLILARLALKLLGRIR 165
>gnl|CDD|221471 pfam12227, DUF3603, Protein of unknown function (DUF3603). This
protein is found in bacteria and eukaryotes. Proteins in
this family are about 250 amino acids in length.
Length = 214
Score = 30.4 bits (69), Expect = 3.0
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 309 LKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG 362
LK+++ LD Q + +KN+ IR + P+ + I++M E+ W + +
Sbjct: 128 LKQLLFMALD---QLHTTKNTAEIRYWYTEWDPEQYEQIQQMDFEEAWEMLYEE 178
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 31.2 bits (71), Expect = 3.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 669 IIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGI-------IKGLYLLKNHNN 721
III++ M+ + FY E YSH +++G + IKGL +K+ +
Sbjct: 480 IIINNKWQGMVRQWQQAFY-----GERYSHSNMEEGAPDFVKLAEAYGIKGLR-IKSRKD 533
Query: 722 EKSKLKVQLIGSGAILREI 740
KS LK L G +L +
Sbjct: 534 LKSSLKEALDYDGPVLIDC 552
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 30.4 bits (69), Expect = 3.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 208 KYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLI--MIVNCNLQRLD 264
+L+ + I RKI G E+DE + + IS+A E+L NL+ +I R+D
Sbjct: 43 SFLNPSPLAKKI-RKIAKKHGLKEVDE-DVLDLISLALEERLRNLLEKLIEVSE-HRVD 98
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 31.1 bits (71), Expect = 3.3
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 19/68 (27%)
Query: 282 YGVGWNVIKVIWSSSWDKLLKCDQN-------------------GILKKIMMDTLDGEYQ 322
Y V W V W+S WDK L + GI+ I+M TL +
Sbjct: 168 YSVKWKESDVKWASRWDKYLDAMHDLQIHWFSIINSLVIVLFLSGIVSMILMRTLRRDIA 227
Query: 323 NYRSKNSD 330
Y + D
Sbjct: 228 RYNELDED 235
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 30.5 bits (69), Expect = 4.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK 915
K GD + + +E++K +ME + G + +I V G K
Sbjct: 21 KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTK 63
>gnl|CDD|223486 COG0409, HypD, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 364
Score = 30.4 bits (69), Expect = 4.6
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 21/62 (33%)
Query: 346 MIEEMSDEDIWNLTFG------------------GHDLRKIYS---AFKMAQKNKDKPTV 384
IE S +D+ TFG G D+R +YS A K+A++N DK V
Sbjct: 77 AIELASSKDVIFCTFGDMMRVPGSPGSLLDAKAEGADVRIVYSPMDALKIAKENPDKKVV 136
Query: 385 LL 386
Sbjct: 137 FF 138
>gnl|CDD|236328 PRK08662, PRK08662, nicotinate phosphoribosyltransferase; Reviewed.
Length = 343
Score = 30.2 bits (69), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 151 FLEGRLTEEQMINFRQEVDGYGLSSY 176
F+ G L E++ R VDG+G+ +Y
Sbjct: 265 FVSGGLDPERIRELRDVVDGFGVGTY 290
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 929
Score = 30.3 bits (68), Expect = 6.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 228 GDGEMDEPESIS-EISMA--AREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHF 281
DG D I EI A E + L ++N NL+ L GP + K+ + F
Sbjct: 712 VDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGF 768
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 30.4 bits (69), Expect = 6.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G+D+ + AFK K+ D P VL I ++KG G
Sbjct: 216 GNDIESLIEAFK-EVKDIDHPIVLHIHTLKGKG 247
>gnl|CDD|237892 PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD;
Provisional.
Length = 364
Score = 29.7 bits (68), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 362 GHDLRKIYS---AFKMAQKNKDKPTVLL 386
G D+R +YS A K+A++N DK V
Sbjct: 109 GADVRIVYSPLDALKIARENPDKEVVFF 136
>gnl|CDD|220150 pfam09239, Topo-VIb_trans, Topoisomerase VI B subunit, transducer.
Members of this family adopt a structure consisting of a
four-stranded beta-sheet backed by three alpha-helices,
the last of which is over 50 amino acids long and
extends from the body of the protein by several turns.
This domain has been proposed to mediate intersubunit
communication by structurally transducing signals from
the ATP binding and hydrolysis domains to the DNA
binding and cleavage domains of the gyrase holoenzyme.
Length = 160
Score = 29.1 bits (66), Expect = 7.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 435 VPFYKPSK----NSPEI-----QYLKNCRKKLGGYLPKRRQKSDEK 471
VPF K + PEI L+ +KL YL ++R+ + +
Sbjct: 113 VPFTSEGKEAIADVPEIEREIRLALQEAARKLKRYLSRKRKAKERR 158
>gnl|CDD|224935 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 29.8 bits (67), Expect = 8.4
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 337 FGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLG 396
+ HPKL+ IE+ SD I TFG +YS +A+ D P + L G G+
Sbjct: 285 YAYHPKLVGSIEKYSDGWIEIATFG------LYSPIALAEYGIDYPVMNL-----GLGVE 333
Query: 397 RFGEARNTAHNIKKIDHQGIKSIR 420
R + A +++ + + I R
Sbjct: 334 RLAMILHGADDVRSMVYPQIYEWR 357
>gnl|CDD|177507 PHA03004, PHA03004, putative membrane protein; Provisional.
Length = 270
Score = 29.3 bits (66), Expect = 8.5
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 280 HFYGVGWNVIKVIWSSSWDKLLKCD----QNGILKKI--MMDTLDGEYQNYRSK-NSDFI 332
H Y GW IWSS + L D G+LKK M+ G Y K N++FI
Sbjct: 39 HNYAYGWIPETAIWSSRYANLDVTDYYPITLGLLKKFEFMLSLYKGPILQYEEKINTEFI 98
Query: 333 -RKNFFGKHPKLLK 345
R +F G++ L+
Sbjct: 99 SRGSFSGRYINYLR 112
>gnl|CDD|146173 pfam03394, Pox_E8, Poxvirus E8 protein.
Length = 242
Score = 28.9 bits (65), Expect = 9.7
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 280 HFYGVGWNVIKVIWSSSWDKLLKCDQN----GILKKI--MMDTLDGEYQNYRSK-NSDFI 332
H Y GW +WSS + L D G+LKK M+ G Y K N++F+
Sbjct: 8 HNYAYGWIPETALWSSRYANLDVTDYYPITLGLLKKFEFMLSLYKGPPLQYEPKINTEFL 67
Query: 333 -RKNFFGKHPKLLK 345
+F G++ K
Sbjct: 68 SNGSFSGRYVNFFK 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,517,429
Number of extensions: 4953359
Number of successful extensions: 4623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4556
Number of HSP's successfully gapped: 126
Length of query: 929
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 823
Effective length of database: 6,236,078
Effective search space: 5132292194
Effective search space used: 5132292194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.2 bits)