RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2375
(929 letters)
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 1287 bits (3332), Expect = 0.0
Identities = 469/844 (55%), Positives = 623/844 (73%), Gaps = 10/844 (1%)
Query: 6 KDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVP-LFKNTAYINTISN 64
D D +ET++W+ A++SVI+ EG RA YLI +++ + G+NV + YINTI
Sbjct: 6 NDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPV 65
Query: 65 NFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFW 124
++PGN+++E ++S IRWNA+ V+RA+K D LGGH++SF S A I ++ FNHF+
Sbjct: 66 EEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFF 125
Query: 125 RAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPK 184
RA GGDL+Y QGH +PGVYARAFLEGRLT+EQ+ NFRQEV G GLSSYPHPKLMP+
Sbjct: 126 RARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPE 185
Query: 185 FWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMA 244
FWQFPTVSMGLGP+ AI+QA+FLKYL R + +T + ++ GDGEMDEPES I++A
Sbjct: 186 FWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIA 245
Query: 245 AREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCD 304
REKLDNL+ ++NCNLQRLDGPV GN KII ELE F G GWNVIKV+W S WD+LL+ D
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKD 305
Query: 305 QNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHD 364
+G L ++M +T+DG+YQ ++SK+ ++R++FFGK+P+ ++ + +DE IW L GGHD
Sbjct: 306 TSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHD 365
Query: 365 LRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLK 424
+KIY+AFK AQ+ K K TV+L +IKGYG+G + +N AH +KK++ G++ IRD
Sbjct: 366 PKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFN 425
Query: 425 LPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKIL 484
+P+ D+++ +P+ + S E YL R+KL GYLP R+ EKL +P L+ F +L
Sbjct: 426 VPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALL 485
Query: 485 EPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQ 544
E ++ISTT A+VR LN +L++K+I +R+VPI+ DE+RTFGMEGLFRQIGI+S GQ
Sbjct: 486 EEQ--SKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQ 543
Query: 545 LYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFG 604
Y P D++QV YY+E++ GQILQEGINE G SW+AAATSYST+N MIPF+ +YSMFG
Sbjct: 544 QYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFG 603
Query: 605 LQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFA 664
QRIGDL W AGD +ARGFLIGGTSGRTT+NGEGLQHEDGHSH+ + TIPNCI YDP +A
Sbjct: 604 FQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYA 663
Query: 665 HEVAIIIHHGLHCMIS-NQEDVFYYITVMNENYSHPGLKKGQEKGIIKGLYLLKNHNNEK 723
+EVA+I+H GL M QE+V+YYIT +NENY P + +G E+GI KG+Y L+ E
Sbjct: 664 YEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETI--EG 721
Query: 724 SKLKVQLIGSGAILREIL-ASKILLQEWDIDSAVWSATSFTLLARDGQETERWNMLHPTK 782
SK KVQL+GSG+ILR + A++IL +++ + S V+S TSFT LARDGQ+ ERWNMLHP +
Sbjct: 722 SKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLE 781
Query: 783 KQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKKLR 842
+V YI + + P + +TDYM+LFAEQVR ++P Y+VLGTDGFG SD+R+ LR
Sbjct: 782 TPRVPYIAQVMND--APAVASTDYMKLFAEQVRTYVP-ADDYRVLGTDGFGRSDSRENLR 838
Query: 843 DFFE 846
FE
Sbjct: 839 HHFE 842
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 136 bits (344), Expect = 5e-33
Identities = 95/715 (13%), Positives = 215/715 (30%), Gaps = 108/715 (15%)
Query: 93 IRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYI--QGHSAPGVYARA 150
+ + L GH + L + H R H + ++I GH P +++
Sbjct: 72 FTRDDVKHRLVGHWGTTPGLNFL----LAHINRLIAD-HQQNTVFIMGPGHGGPAGTSQS 126
Query: 151 FLEGRLTEEQMINFRQEVDGYGLS---SYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFL 207
+++G TE + E SYP + P G L +
Sbjct: 127 YVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYG 186
Query: 208 KYLHARKITNTINRKIWILCGDGEMDEP---ESISEISMAAREKLDNLIMIVNCNLQRLD 264
++ + + + GDGE + + ++ I++ N ++
Sbjct: 187 AVMNNP------SLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIA 240
Query: 265 GPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNY 324
P +EL F G+G++ + + + + + + + +
Sbjct: 241 NPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRR------FAELFETIFD-- 292
Query: 325 RSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQKNKDKPTV 384
++ I +A + + +
Sbjct: 293 ---------------------------------------EICDIKAAAQTDDMTRPFYPM 313
Query: 385 LLIKSIKGYGL-----GRFGEARNTAHNIK----KIDHQGIKSIRDFLKLPIPDSELSLV 435
L+ ++ KG+ G+ E AH + + + + ++ +++ P+ EL
Sbjct: 314 LIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDTEEHFEVLKGWMESYKPE-EL--- 369
Query: 436 PFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPL---EAFKKILEPTLNERK 492
F ++ + G P + L P + E +
Sbjct: 370 -FNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQ 428
Query: 493 ISTTYAYVRILNTILRDKNIGN-RVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDK 551
+ A I++ N + R+ DE+ + + + G L VD+
Sbjct: 429 VEAPRALGAYCRDIIK-NNPDSFRIFG--PDETASNRLNATYEVTDKQWDNGYLSGLVDE 485
Query: 552 DQVIYYR--EEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIG 609
+ + E+ + + G EA + +SY + ++ ++ + +
Sbjct: 486 HMAVTGQVTEQLSEHQCE-GFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVR 544
Query: 610 DLAWLAGDIRARGFLIGGTSGRTTINGEGLQHED-GHSHVLASTIPNCIP----YDPTFA 664
++ W I + L+ R N G H+D G + +L + N Y T A
Sbjct: 545 EIPWRK-PISSVNLLVSSHVWRQDHN--GFSHQDPGVTSLLINKTFNNDHVTNIYFATDA 601
Query: 665 HEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQ-EKGIIKGLYLLKNHNNEK 723
+ + I + + + + + + G K +N +
Sbjct: 602 NMLLAISEKCF------KSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEWKWASNAE 655
Query: 724 SKLK--VQLIGSGAI-LREILASKILLQEWDIDSAVWSATSFTLLARDGQETERW 775
+ + V L +G + +E++A+ L + I V + L E
Sbjct: 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEAL 710
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 115 bits (291), Expect = 4e-31
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M K + VP+IG EVEV+ VMVK+GD + +QSL+ VE +K SME+P+ GVV+E+KV
Sbjct: 1 MVKEVNVPDIGG-DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Query: 911 KVGDKISKDSQILILE 926
VGDK+ S I+I E
Sbjct: 60 NVGDKVKTGSLIMIFE 75
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 115 bits (291), Expect = 4e-31
Identities = 33/72 (45%), Positives = 54/72 (75%)
Query: 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
+KVP+IG V++ V V +GDTI +D +L+ +E++K +M++P+ GVV+E+KVKVGD
Sbjct: 5 LKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD 64
Query: 915 KISKDSQILILE 926
KIS+ I+++E
Sbjct: 65 KISEGGLIVVVE 76
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 113 bits (284), Expect = 4e-30
Identities = 35/74 (47%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
+II+VP+IG + EV ++VK GD I+++Q L+V+ES K SME+PS GVV+ + VK+
Sbjct: 2 EIIRVPDIGG--DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 913 GDKISKDSQILILE 926
GDK+ + I+ LE
Sbjct: 60 GDKLKEGDAIIELE 73
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 106 bits (266), Expect = 9e-28
Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M K + VP+I VEV+ VMVK+GD + +QSL+ VE +K SME+P+ GVV+E+KV
Sbjct: 1 MVKEVNVPDI-----VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 55
Query: 911 KVGDKISKDSQILILE 926
VGDK+ S I+I E
Sbjct: 56 NVGDKVKTGSLIMIFE 71
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 100 bits (250), Expect = 2e-22
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 851 MKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909
M K+P+IG+ + E E+ VK GD + D L V+++K +EIPS G V EI
Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 910 VKVGDKISKDSQILILEE 927
V G + ++ L+
Sbjct: 61 VPEGTVATVGQTLITLDA 78
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 72.3 bits (178), Expect = 9e-16
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 851 MKKI--IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVRE 907
M ++ K+ +IG+ + EV V VK GDT+ S+ V+S+K S+ I S ++GV+++
Sbjct: 1 MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 908 IKVKVGDKISKDSQILILEEQ 928
+ + D ++ +E +
Sbjct: 61 LYYNLDDIAYVGKPLVDIETE 81
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 71.5 bits (176), Expect = 1e-15
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 853 KIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911
K+P+IG+ ++E E+ VK GD ++ DQ L+ V ++KV+++IPS G + +I +
Sbjct: 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYR 61
Query: 912 VGDKISKDSQILILE 926
G + S +L ++
Sbjct: 62 EGQVVPVGSTLLQID 76
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 79.5 bits (197), Expect = 2e-15
Identities = 68/335 (20%), Positives = 110/335 (32%), Gaps = 113/335 (33%)
Query: 77 EEHLQSLIRWNAMALVIRANKIDS---SLGGHLSSFASLAHILEIGFNHFWR-APTHSHG 132
++ LQ+L A +R + I + + GH +S S A I+ + F H R
Sbjct: 7 QQKLQAL---KDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRN 63
Query: 133 GD---LIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFWQF 188
+ +GH+AP +YA G L E +++N R+ S HP
Sbjct: 64 PHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRK----IS-SDLDGHPVPK-----Q 113
Query: 189 PTVSMGLGPL-----TAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISE-IS 242
+ G L A A + K + + +++ L GDGE+ E S+ E ++
Sbjct: 114 AFTDVATGSLGQGLGAACGMA------YTGKYFDKASYRVYCLLGDGELSEG-SVWEAMA 166
Query: 243 MAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLK 302
A+ KLDNL+ I
Sbjct: 167 FASIYKLDNLV-------------------------------------AIL--------- 180
Query: 303 CDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNF--FGKHPKLLKMIEEMSDEDIWN-LT 359
D N + D +K FG W+ +
Sbjct: 181 -DINRL-------GQSDPAP--LQHQMDIYQKRCEAFG-----------------WHAII 213
Query: 360 FGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
GH + ++ AF A K +PT ++ K+ KG G
Sbjct: 214 VDGHSVEELCKAFGQA---KHQPTAIIAKTFKGRG 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 1e-12
Identities = 77/558 (13%), Positives = 152/558 (27%), Gaps = 191/558 (34%)
Query: 446 EIQYLKNCRKKLGGYLPKRRQKSD----EKLLIPPL--EAFKKIL-EPTLNERKISTTYA 498
E QY + L + D + + L E I+
Sbjct: 13 EHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG------- 63
Query: 499 YVRILNTILRDKNIGNRVVPILVDESRTFGMEGLFRQIGI------------FSQVGQLY 546
L L K +V V+E + L I Q +LY
Sbjct: 64 -TLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 547 ---DPVDKDQVIYYREEKNGQI---LQEGINEAG----GMG----SWIAAATSYSTSNCI 592
K V R + ++ L E G+ +W+A S
Sbjct: 121 NDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 593 MIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLAST 652
+ F F WL L+ L
Sbjct: 179 KMDFKIF-------------WL-------------NLKNCNSPETVLEM-------LQK- 204
Query: 653 IPNCIPYDPTFAHEVAIIIHHGLHCMISNQEDVFYYITVMNENYSHPGLKKGQEKGIIKG 712
+ + + +++ D + S+ L+ + ++
Sbjct: 205 ------------------LLYQIDPNWTSRSD----------HSSNIKLRIHSIQAELRR 236
Query: 713 LYLLKNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWSATSF---TLL-ARD 768
L K + N L+ +L + ++ W+A + LL R
Sbjct: 237 LLKSKPYEN-------CLL----VLLNV---------Q--NAKAWNAFNLSCKILLTTRF 274
Query: 769 --------GQETERWNMLHP----TKKQKVAYITKSLE----------KSIGPIIVATDY 806
T ++ H T + + + K L+ + P ++
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--- 331
Query: 807 MRLFAEQVRAFIPKGRIYKVLGTDGFGCSDTRKK---------LRDFFENIIHMKKIIKV 857
+ AE +R + +K + D + + R F+ + +
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 858 PNI------GDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911
P I D+ + +V V+ K+ SL+ + ++ ++ IPS + E+KVK
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQPKESTISIPSIY----LELKVK 438
Query: 912 VGDKISKDSQILILEEQY 929
+ ++ + I+ + Y
Sbjct: 439 LENEYALHRSIV---DHY 453
Score = 60.3 bits (145), Expect = 3e-09
Identities = 88/636 (13%), Positives = 186/636 (29%), Gaps = 190/636 (29%)
Query: 163 NFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRK 222
F D + P L + + + + A+ L + K + +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKE--EIDHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 223 I---------WILCG-DGEMDEPESISEISMAAREKLDNLI-MIVNCNLQRLDGPVRGNS 271
+ +++ E +P ++ + + R++L N + N+ RL P
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLR 141
Query: 272 KIIQELEAHFY-------GVG--WNVIKVIWSSS----------WDKLLKCDQNGILKKI 312
+ + EL G G W + V S W L C+ + ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 313 MMD---TLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMS--------DEDIWNLTFG 361
+ +D + + RS +S I+ +L ++++ ++ N
Sbjct: 202 LQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN---- 255
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD 421
K ++AF ++ K +LL R K + D
Sbjct: 256 ----AKAWNAFNLSCK------ILLT-------------TRF-------------KQVTD 279
Query: 422 FLKLPIPDSELSLVPFYKP--SKNSPEI--QYLKNCRKKLGGYLPKRRQKSDEKLLIPPL 477
FL + +SL + +YL +CR + LP+ E L P
Sbjct: 280 FLS-AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQD---LPR------EVLTTNPR 328
Query: 478 ------------------------EAFKKILEPTLNERKISTTYAYVRILNTILR-DKNI 512
+ I+E +LN + + L ++ +I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHI 387
Query: 513 GNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIY--YREEK----NGQIL 566
++ ++ + + + ++ +S V + P + I Y E K N L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSIYLELKVKLENEYAL 445
Query: 567 QEGINEAGGMGSWIAAATSYSTSNCIMIP----FFTF--YSMFGLQRIG----------D 610
I + ++ + + I F++ + + ++ D
Sbjct: 446 HRSIVDH------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 611 LAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPY-------DPTF 663
+L IR + + +T+ Y DP +
Sbjct: 500 FRFLEQKIRHDSTAWNASGS------------------ILNTLQQLKFYKPYICDNDPKY 541
Query: 664 AHEVAIIIH----HGLHCMISNQEDVFYYITVMNEN 695
V I+ + + S D+ I +M E+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLL-RIALMAED 576
Score = 57.6 bits (138), Expect = 2e-08
Identities = 76/464 (16%), Positives = 138/464 (29%), Gaps = 166/464 (35%)
Query: 210 LHARKITNTINRKI-WILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNL-QRLDG-- 265
+ K+ ++ KI W+ + PE++ E+ L L+ ++ N R D
Sbjct: 171 CLSYKVQCKMDFKIFWL--NLKNCNSPETVLEM-------LQKLLYQIDPNWTSRSDHSS 221
Query: 266 --PVRGNSKIIQELEAHFYGVGWN----VIKVIWSSS-WDKL-LKCDQNGILKKIMM--- 314
+R +S I EL + V+ + ++ W+ L C KI++
Sbjct: 222 NIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-------KILLTTR 273
Query: 315 -----DTLDGEYQNYRSKNSDFIRKNF--------FGK----------------HPKLLK 345
D L + S D K +P+ L
Sbjct: 274 FKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 346 MI-EEMSDE-DIWN--------------------LTFGGHDLRKIYSAFKMAQKNKDKPT 383
+I E + D W+ L + RK++ + + PT
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPT 389
Query: 384 VLL---------------IKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRD-FLKLPI 427
+LL + + Y L ++K + SI +L+L +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSL------------VEKQPKESTISIPSIYLELKV 437
Query: 428 PDSEL-----SLVPFYKPSKNSPEIQYLKNCRKKLGGY--------LPKRRQKSDEKLLI 474
S+V Y K + L Y L E+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LDQYFYSHIGHHLKNIEH--PER--- 489
Query: 475 PPLEAFKKILEPTLN----ERKI----STTYAYVRILNTILRDKNIGNRVVPI------L 520
+ F+ + L+ E+KI + A ILNT+ + K + L
Sbjct: 490 --MTLFRMVF---LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 521 VDESRTFGM---EGLFR-------QIGIFSQVGQLYDPVDKDQV 554
V+ F E L +I + ++ +++ K QV
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK-QV 587
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 60.7 bits (148), Expect = 9e-12
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
I VP++ + +++ V+T K GD + D+ L+ +E++KV +E+P+S +G++ + G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 914 DKISKDSQILILEE 927
++ + L E
Sbjct: 65 TTVTSRQILGRLRE 78
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 60.3 bits (147), Expect = 1e-11
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
IK P + +++ V+T K G+ +K D+ ++ +E++KV ME+ + +GV+ EI G
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Query: 914 DKISKDSQILILEE 927
D + + L E
Sbjct: 64 DTVLSGELLGKLTE 77
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 59.1 bits (144), Expect = 3e-11
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
+ V VK GD I+ Q + ++ES K+ + I + +G+V+E+K K GD +++ +L L
Sbjct: 10 LWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69
Score = 32.6 bits (75), Expect = 0.070
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 897 IPSSHNGVVREIKVKVGDKISKDSQILILE 926
+ G + ++ VK GD+I K ++ ILE
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILE 31
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 58.6 bits (142), Expect = 7e-11
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSME--IPSSHNGVVREIKVKVGDKISKDSQILIL 925
+ V VK GD +K SL+V+ + K ME I S +G V+++ + G + ++ + ++
Sbjct: 25 IEKVFVKAGDKVKAGDSLMVMIAMK--MEHTIKSPKDGTVKKVFYREGAQANRHTPLVEF 82
Query: 926 EEQ 928
EE+
Sbjct: 83 EEE 85
Score = 32.8 bits (75), Expect = 0.11
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 902 NGVVREIKVKVGDKISKDSQILILE 926
G + ++ VK GDK+ ++++
Sbjct: 22 TGTIEKVFVKAGDKVKAGDSLMVMI 46
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 55.3 bits (134), Expect = 6e-10
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
V V+V++GD +++ Q LLV+E+ K+ EIPS +GVV+ I VK G+ + ++ L
Sbjct: 16 VLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
Score = 33.0 bits (76), Expect = 0.051
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 886 LVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+VV VS +P G V + V+VGD++ +L+LE
Sbjct: 1 MVVSENVVSAPMP----GKVLRVLVRVGDRVRVGQGLLVLE 37
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 55.5 bits (134), Expect = 9e-10
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSME--IPSSHNGVVREIKVKVGDKISKDSQILIL 925
V V VK GD + Q + V+E+ K M+ + + G V+ + + GD + + ++ L
Sbjct: 36 VVAVSVKPGDAVAEGQEICVIEAMK--MQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93
Query: 926 E 926
E
Sbjct: 94 E 94
Score = 31.2 bits (71), Expect = 0.35
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 903 GVVREIKVKVGDKISKDSQILILE 926
GVV + VK GD +++ +I ++E
Sbjct: 34 GVVVAVSVKPGDAVAEGQEICVIE 57
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 54.9 bits (133), Expect = 9e-10
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
VS ++VK GDT+K Q++LV+E+ K+ EI + +G V ++ VK D + ++ +
Sbjct: 19 VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
Score = 32.6 bits (75), Expect = 0.071
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 896 EIPSSHNGVVREIKVKVGDKISKDSQILILE 926
EIP+ G V +I VK GD + +L+LE
Sbjct: 10 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-09
Identities = 109/684 (15%), Positives = 192/684 (28%), Gaps = 263/684 (38%)
Query: 172 GLSSYP----HPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILC 227
S+ P H L V + + Q +F K L T
Sbjct: 3 AYSTRPLTLSHGSLEHVL----LVPTASFFIASQLQEQFNKILPEP--TEG-------FA 49
Query: 228 GDGEMDEPESISE-----ISMAARE----KLDNLIMIVNCNLQRLDGPVRGNSKIIQELE 278
D DEP + +E + + K+ ++N L + + ++ +
Sbjct: 50 AD---DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE------NCYLEGND 100
Query: 279 AHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFG 338
H + + + L+K ++K Y ++ ++ F
Sbjct: 101 IH------ALAAKLLQENDTTLVK--TKELIK---------NY--ITARI--MAKRPFDK 139
Query: 339 KHP-KLLKMIEEMSDEDIWNLTFGG--------HDLRKIYSAFKMAQKNKDKPTV-LLIK 388
K L + + E + + FGG +LR +Y + V LIK
Sbjct: 140 KSNSALFRAVGE-GNAQLV-AIFGGQGNTDDYFEELRDLYQTY--------HVLVGDLIK 189
Query: 389 SIKGYGLGRFGEARNTAHNIKKIDHQGIKSIRDFLKLP--IPDSE-LSLVPFYKPSKNS- 444
E T + +K+ QG+ +I ++L+ P PD + L +P S
Sbjct: 190 FSA----ETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPI------SC 238
Query: 445 PEI------QYLKNCRKKLGGYLPK----------------------------------- 463
P I Y+ KL G+ P
Sbjct: 239 PLIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 464 ------------RRQKSDEKLLIPPLEAFKKILE-----PT--LNERKISTTY--AYVRI 502
R ++ +PP + LE P+ L+ ++ YV
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 503 LNTILRDKNIGNRVVPI-LVDESRTF---G----MEGL---FRQIGIFSQVGQLYDPVDK 551
N+ L + V I LV+ ++ G + GL R+ P
Sbjct: 356 TNSHLP----AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA---------PSGL 402
Query: 552 DQV-IYYREEKNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGD 610
DQ I + E K + + + + PF + L D
Sbjct: 403 DQSRIPFSERK------------------LKFSNRFLP---VASPFHSHL----LVPASD 437
Query: 611 LAWLAGDIRARGFLIGGTSGRT----TINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHE 666
L + D+ + T +G L+ G ++ I +CI P
Sbjct: 438 L--INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG---SISERIVDCIIRLP----- 487
Query: 667 VAIIIHHGLHCMISNQEDVFYYITVMNENYSH-----PGLKKGQEKGIIKGLYLLKNHNN 721
+ + T +H PG GL +L + N
Sbjct: 488 ----VK---------------WETTTQFKATHILDFGPGG--------ASGLGVLTHRNK 520
Query: 722 EKSKLKVQLIGSGAILREILASKI 745
+ G+G R I+A +
Sbjct: 521 D---------GTGV--RVIVAGTL 533
Score = 51.2 bits (122), Expect = 2e-06
Identities = 77/436 (17%), Positives = 137/436 (31%), Gaps = 147/436 (33%)
Query: 3 ETTKDSDIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVPLFK----NTAY 58
D+ +V+TKE I + Y + M K N LF+ A
Sbjct: 109 LQENDTTLVKTKELI-------------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 59 INTI----SNN---FD------DDFPGNIK-----IEEHLQSLIRWNAMALVIRANKID- 99
+ I N F+ + + E L LIR A + ++
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 100 -------SSLGGH---LSSFASLAHILEIGFNHFWRAPTHSHG---GDLI-YIQG---HS 142
S+ LS S I I H+ G G+L Y++G HS
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-AKLLGFTPGELRSYLKGATGHS 274
Query: 143 APGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIH 202
G+ + + E +F V + ++ F+ +G+ +
Sbjct: 275 Q-GLVTAVAIAETDSWE---SFFVSVRKA-I------TVL--FF------IGV----RCY 311
Query: 203 QARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLIMIVNCNL-- 260
+A L + +++ +G P + IS +E++ + + N +L
Sbjct: 312 EAYPNTSLPPSILEDSLEN------NEG---VPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 261 -QRL-----DGP----VRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILK 310
+++ +G V G Q L YG+ + K S DQ+
Sbjct: 363 GKQVEISLVNGAKNLVVSGPP---QSL----YGLNLTLRKAKAPS------GLDQS---- 405
Query: 311 KIMMDTLDGEYQNYRSKNSDFIRK-----NF------FGKHPKLLKMIEEMSDEDIW--N 357
R S+ RK F F H LL ++ ++D+ N
Sbjct: 406 --------------RIPFSE--RKLKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNN 447
Query: 358 LTFGGHDLRK-IYSAF 372
++F D++ +Y F
Sbjct: 448 VSFNAKDIQIPVYDTF 463
Score = 47.0 bits (111), Expect = 4e-05
Identities = 86/676 (12%), Positives = 176/676 (26%), Gaps = 241/676 (35%)
Query: 42 FLLRHG-----MNVPLFKNTAYIN--TISNNFDDDFP---GNIKIEEHLQSLIRWNAMAL 91
L HG + VP ++ + F+ P ++ + L
Sbjct: 9 LTLSHGSLEHVLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-----L 60
Query: 92 VIR-----ANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQG---HSA 143
V + ++ ++ S G +L + F Y++G H+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFD------QVLNLCLTEFENC----------YLEGNDIHAL 104
Query: 144 PGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQ 203
A L+ + + +E+ + +Y M P
Sbjct: 105 ----AAKLLQ---ENDTTLVKTKEL----IKNY-----------ITARIMAKRPFDKKSN 142
Query: 204 ARFLKYLHARKITNTINRKIWILC---GDGE--MDEPESISEISMAAREKLDNLIMIVNC 258
+ + + ++ + G+ + +E + + + +LI
Sbjct: 143 SALFRAVGEGNA------QLVAIFGGQGNTDDYFEELRDLYQTY---HVLVGDLIKFSAE 193
Query: 259 NLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKKIMMDTLD 318
L L +R + G N++ W L +T D
Sbjct: 194 TLSEL---IRTTLD-----AEKVFTQGLNIL------EW--LENPS----------NTPD 227
Query: 319 GEY--------------Q--NYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGG 362
+Y Q +Y + G P E+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHY------VVTAKLLGFTP------GELRSYLKGATGHS- 274
Query: 363 HDLRKIYSAFKMAQ--------KNKDKPTVLLIKSIKGY-GLGRFGEARNTAHNIKK-ID 412
+ + +A +A+ + K +L I G + ++ ++
Sbjct: 275 ---QGLVTAVAIAETDSWESFFVSVRKAITVLF-FI-GVRCYEAYPNTSLPPSILEDSLE 329
Query: 413 H-QGIKS----IRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKK--LGGYLPKRR 465
+ +G+ S I + L ++ + P+ EI L N K + G
Sbjct: 330 NNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSG------ 381
Query: 466 QKSDEKLLIPP--LEAFKKILE-----PTLNERKI--STTYAYVRILNTILRDKNIGNRV 516
PP L L L++ +I S R NR
Sbjct: 382 ---------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSE------------RKLKFSNRF 420
Query: 517 VPI-------LVDESRTFGMEGLFRQIGIFSQVGQL----YDPVD-KDQVIYYREEKNG- 563
+P+ L+ + + L + + + YD D D R
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKN-NVSFNAKDIQIPVYDTFDGSDL----RVLSGSI 475
Query: 564 ------QILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFG---LQRIGDLAWL 614
I++ + W T + ++ + FG +G L
Sbjct: 476 SERIVDCIIRLPVK-------W-ETTTQFKATHIL---------DFGPGGASGLGVL--T 516
Query: 615 AGDIRARGF--LIGGT 628
+ G ++ GT
Sbjct: 517 HRNKDGTGVRVIVAGT 532
Score = 43.5 bits (102), Expect = 3e-04
Identities = 82/552 (14%), Positives = 160/552 (28%), Gaps = 189/552 (34%)
Query: 466 QKSDE--KLLIPPLEAFKKILEPT----L---------NERKISTTYAYVRILN------ 504
Q ++ K+L P E F EPT L + + S + ++LN
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 505 --TILRDKNIGNRVVPILVDESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVI--YYREE 560
L +I + + L+ E+ T V ++I Y
Sbjct: 92 ENCYLEGNDI-HALAAKLLQENDT--------------------TLVKTKELIKNYITAR 130
Query: 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFG-----------LQRIG 609
+ + ++ + A + ++FG L+ +
Sbjct: 131 ---IMAKRPFDKKSN-SALFRAVGEGNAQ---------LVAIFGGQGNTDDYFEELRDLY 177
Query: 610 DL-AWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVA 668
L GD LI ++ L L T +
Sbjct: 178 QTYHVLVGD------LIKFSAET-------LSE-------LIRTTLDAEKVFT------- 210
Query: 669 IIIHHGLHCM--ISNQE---DVFYYITVMNENYSHPGLKKGQEKGIIKGL-----YL--L 716
GL+ + + N D Y +++ S P + G+ Y+
Sbjct: 211 ----QGLNILEWLENPSNTPDKDYLLSIP---ISCPLI----------GVIQLAHYVVTA 253
Query: 717 KNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWSATSFTLLARD-------- 768
K +L+ L G+ + ++ + + + S SF + R
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAI-------AETDSWESFFVSVRKAITVLFFI 306
Query: 769 ---GQETERWNMLHPTKKQKVAYITKSLEKSIG---PIIVATDYMRL----FAEQVRAFI 818
E L P+ + SLE + G P++ ++ + + + + +
Sbjct: 307 GVRCYEAYPNTSLPPSILE------DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 819 PKGR-IYKVL--GTDGFGCSDTRKKLRDFFENIIHMKKIIKVPNIGDLSEVEVS------ 869
P G+ + L G S + L + ++K K P+ D S + S
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGL---NLTLRK-AKAPSGLDQSRIPFSERKLKF 416
Query: 870 -------TV------MVKIGDTIKIDQSLLVVESEKVSMEIP--SSHNGV-VREIKVKVG 913
+V D I D V ++IP + +G +R + +
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 914 DKISKDSQILIL 925
++I I+ L
Sbjct: 477 ERIVD--CIIRL 486
Score = 42.0 bits (98), Expect = 0.001
Identities = 58/370 (15%), Positives = 106/370 (28%), Gaps = 156/370 (42%)
Query: 1 M-KETTKDSDIVETKE-WISALK--------SVIKI--EGPNRAYYLIKKMIKFLLRHGM 48
M + K S ++ W A S++ I P + I F G
Sbjct: 1631 MGMDLYKTSKAA--QDVWNRADNHFKDTYGFSILDIVINNP------VNLTIHFGGEKGK 1682
Query: 49 NVPLFKNTAYINTISNNFDDDFPGNIKIE-------EHLQSLIRWN-------------- 87
+ N + F+ G +K E EH S +
Sbjct: 1683 RI-------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-FRSEKGLLSATQFTQP 1734
Query: 88 AMALV-------IRAN---KIDSSLGGH-L---SSFASLAHILEIGFNHFWRAPTHSHGG 133
A+ L+ +++ D++ GH L ++ ASLA ++ I
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-------------- 1780
Query: 134 DLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSM 193
L+ + V+ R G + + D G S+Y M
Sbjct: 1781 SLVEV-------VFYR----GMTMQVAV-----PRDELGRSNY---------------GM 1809
Query: 194 GLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDNLI 253
AI+ R E++ + ++ L+
Sbjct: 1810 I-----AINPGRVAASF-----------------------SQEALQYVVERVGKRTGWLV 1841
Query: 254 MIVNCNLQRLDGP---VRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILK 310
IVN N ++ G+ + + + NV+ I KL K D + K
Sbjct: 1842 EIVNYN---VENQQYVAAGDLRALDTVT--------NVLNFI------KLQKIDIIELQK 1884
Query: 311 KIMMDTLDGE 320
+ ++ ++G
Sbjct: 1885 SLSLEEVEGH 1894
Score = 39.3 bits (91), Expect = 0.008
Identities = 52/283 (18%), Positives = 78/283 (27%), Gaps = 122/283 (43%)
Query: 4 TTKDSDIV------ETKEWISALKSVIK-IE-----G-------PNRAYYLIKKMIKFLL 44
T +V ET W S SV K I G PN + L +++ L
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSL 328
Query: 45 RHGMNVP-------------LFKNTAYINTISNNFDDDFPGNIKIEEHLQSLIRWN-AMA 90
+ VP + N+ P ++ + SL+ N A
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNS-------HLPAGKQV--EI-SLV--NGAKN 376
Query: 91 LVIRANKIDSSLGGHLSSFASLAHILE------------IGFN----HF-WR-----APT 128
LV+ G S L L I F+ F R +P
Sbjct: 377 LVV---------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 129 HSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQE---------VDGYGLSSYPH- 178
HSH + A + L + ++F + DG L
Sbjct: 428 HSH-----LLVP-------ASDLINKDLVKNN-VSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 179 --PKL------MPKFWQ------------F-PTVSMGLGPLTA 200
++ +P W+ F P + GLG LT
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Score = 32.3 bits (73), Expect = 0.93
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 66/210 (31%)
Query: 662 TFAH---EVAIIIHHGLHCMISNQEDVFYYI--------TVMNENYSHPGLKKGQEKGII 710
T +H E +++ + S ++ F I +E + L +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-------VG 62
Query: 711 KGL-YLLKNHNNEKSKLKVQLIGS-GAILREILA---SKILLQEWDIDSAVWSATSFTLL 765
K L Y+ + E SK +G +L L + L DI + LL
Sbjct: 63 KFLGYV--SSLVEPSK-----VGQFDQVLNLCLTEFENCYLEGN-DIHALA-----AKLL 109
Query: 766 ARDGQETERWNMLHPTKKQKV--AYIT------KSLEKSIGPIIVATDYMRLFAEQVRAF 817
+ K +++ YIT + +K LF V
Sbjct: 110 QENDTT--------LVKTKELIKNYITARIMAKRPFDKKSNS--------ALF-RAVGE- 151
Query: 818 IPKGRIYKVLGTDGFGCSDTR-KKLRDFFE 846
++ + G G G +D ++LRD ++
Sbjct: 152 -GNAQLVAIFG--GQGNTDDYFEELRDLYQ 178
Score = 31.6 bits (71), Expect = 1.8
Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 143/323 (44%)
Query: 47 GMNVPLFKNTAYINTISNNFD--DDF----------------PGNI----------KIEE 78
GM + L+K + + ++ D+ P N+ +I E
Sbjct: 1630 GMGMDLYKTSKAAQDV---WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 79 HLQSLIRWNAMALVIRANKIDSSLGGHLSSF---------------------ASLAHILE 117
+ ++I + ++ KI + H +S+ A E
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-AFE 1745
Query: 118 IGFNHFWRAPTHSHGG--DLIYIQGHS--------APG-----------VYARAFLEGRL 156
+ S G GHS + V+ R G
Sbjct: 1746 D-----LK----SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR----GMT 1792
Query: 157 TEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHA---R 213
+ + D G S+Y M AI+ R +
Sbjct: 1793 MQVAV-----PRDELGRSNY---------------GMI-----AINPGRVAASFSQEALQ 1827
Query: 214 KITNTINRKI-WIL-------------CGDGEMDEPESISEISMAAREKLDNLIMIVNCN 259
+ + ++ W++ G++ ++++ + L N I + +
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAA-GDLRALDTVTNV-------L-NFIKLQKID 1878
Query: 260 LQRLDGPVRGNSKIIQELEAHFY 282
+ L S ++E+E H +
Sbjct: 1879 IIEL--QK---SLSLEEVEGHLF 1896
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 59.6 bits (145), Expect = 4e-09
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
V + V G + Q L V+ + K+ + S G VR++ V + D IL +E
Sbjct: 660 VIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
Score = 39.2 bits (92), Expect = 0.006
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 854 IIKVPNIGDLSEVEVSTVMVKI-GD--TIKIDQSLLVVESEK-------VSMEIPSSHNG 903
IK + DL+ V ++ G +I + + + E V +I + G
Sbjct: 599 HIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPG 658
Query: 904 VVREIKVKVGDKISKDSQILILE 926
V +IKV G K++K + +L
Sbjct: 659 KVIDIKVVAGAKVAKGQPLCVLS 681
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 57.3 bits (139), Expect = 2e-08
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSME--IPSSHNGVVREIKVKVGDKISKDSQILIL 925
+ V+V+ G T++ +L+V+E+ K ME I + H GVV+ + G+ + + + ++ L
Sbjct: 613 IVRVLVEPGQTVEAGATLVVLEAMK--MEHSIRAPHAGVVKALYCSEGELVEEGTPLVEL 670
Query: 926 EEQ 928
+E
Sbjct: 671 DEN 673
Score = 29.2 bits (66), Expect = 7.1
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 902 NGVVREIKVKVGDKISKDSQILILE 926
NG + + V+ G + + +++LE
Sbjct: 610 NGSIVRVLVEPGQTVEAGATLVVLE 634
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 56.5 bits (137), Expect = 3e-08
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSME--IPSSHNGVVREIKVKVGDKISKDSQILIL 925
+ V V++G ++ Q+L +E+ K ME + + GVV +I G+ ++ D I+
Sbjct: 623 IVKVDVEVGQEVQEGQALCTIEAMK--MENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680
Query: 926 E 926
E
Sbjct: 681 E 681
Score = 31.1 bits (71), Expect = 2.2
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 902 NGVVREIKVKVGDKISKDSQILILE 926
G++ ++ V+VG ++ + + +E
Sbjct: 620 PGLIVKVDVEVGQEVQEGQALCTIE 644
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 53.3 bits (128), Expect = 7e-08
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 851 MKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIK 909
I +P++ + E + + K G+ + +L +E++K + + +S +G++ +I
Sbjct: 2 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
Query: 910 VKVGDK-ISKDSQILILEEQ 928
V+ G K I S I ++ E+
Sbjct: 62 VEEGSKNIRLGSLIGLIVEE 81
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 49.3 bits (118), Expect = 1e-07
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
++ V+ G ++ S +E K+ M + G V+ + G + + LE
Sbjct: 16 LTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLE 73
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 48.6 bits (116), Expect = 3e-07
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
++ V+ G ++ S +E K+ M + G V+ + G + + LE
Sbjct: 28 LTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLE 85
Score = 28.6 bits (64), Expect = 2.8
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 881 IDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V E E + S G + + V+ G + S +E
Sbjct: 4 GSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 53.5 bits (129), Expect = 3e-07
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
+ +GD ++ ++++E+ K M + ++ +G V +I K GD + + ++
Sbjct: 1178 FWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
Score = 31.1 bits (71), Expect = 2.1
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 894 SMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+ + S + G + VGD + ++I+E
Sbjct: 1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 53.5 bits (129), Expect = 4e-07
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILEE 927
V+ V V +G+T+K +Q LL+ E+ K+ I + +GV++++ V GD I+ ++ +E+
Sbjct: 1088 VTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147
Score = 36.1 bits (84), Expect = 0.064
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 854 IIKVPNIGDLSEVEVSTVMVKI-GD--TIKI-DQSLLV--VESEK----VSMEIPSSHNG 903
IIK+ I + E T+ + G I I D+++ K I + G
Sbjct: 1027 IIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPG 1086
Query: 904 VVREIKVKVGDKISKDSQILILE 926
V E+KV VG+ + + +LI E
Sbjct: 1087 SVTEVKVSVGETVKANQPLLITE 1109
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 53.1 bits (128), Expect = 4e-07
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+S V V G + L+ +E+ K+ I + +G + E+ VK GD+I + +
Sbjct: 1106 ISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164
Score = 36.5 bits (85), Expect = 0.047
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 854 IIKVPNIGDLSEVEVSTVM---------VKIGDTIKIDQSLLVVESEK----VSMEIPSS 900
+I + + TV +K+ D + + K + + +
Sbjct: 1044 VIVNQAVSATDSQGMVTVFFELNGQPRRIKVPD--RAHGATGAAVRRKAEPGNAAHVGAP 1101
Query: 901 HNGVVREIKVKVGDKISKDSQILILE 926
GV+ + V G ++ ++ +E
Sbjct: 1102 MPGVISRVFVSSGQAVNAGDVLVSIE 1127
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 41.4 bits (98), Expect = 5e-05
Identities = 13/54 (24%), Positives = 32/54 (59%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILILE 926
+++G + + +L +VE+ K+ +I + +G V+ I V+ G + D ++++E
Sbjct: 27 IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 42.9 bits (102), Expect = 5e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
GHD I A A + KPT++ K++ G+G
Sbjct: 220 GHDFVAIEKAINEAHSQQQKPTLICCKTVIGFG 252
Score = 34.0 bits (79), Expect = 0.26
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 219 INRKIWILCGDGE-MDEPESIS-E-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKI 273
I+ ++ GDG M E +S E S+A L+ L+ + N +DG +G +
Sbjct: 147 IDHHTYVFLGDGCLM---EGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWFSDNT 203
Query: 274 IQELEAHFYGVGWNVIKVI 292
+ A+ GW+VI+ +
Sbjct: 204 PERFRAY----GWHVIENV 218
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 42.5 bits (101), Expect = 7e-04
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G+D+ I A + A+ ++ +PT++ +++ G+G
Sbjct: 244 GNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFG 276
Score = 33.6 bits (78), Expect = 0.36
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 223 IWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQELEA 279
+ +CGDG++ E S +E S+AA +L L+++ + N LDG + + + +A
Sbjct: 175 TYAICGDGDLMEGVS-AEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKA 233
Query: 280 HFYGVGWNVIKVIW 293
YG W VI+V
Sbjct: 234 --YG--WQVIRVED 243
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 42.1 bits (100), Expect = 9e-04
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
GHD I A + A+ DKP++L+ K+I G+G
Sbjct: 218 GHDAASIKRAVEEARAVTDKPSLLMCKTIIGFG 250
Score = 34.4 bits (80), Expect = 0.20
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 219 INRKIWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQ 275
++ + GDG M E S E S+A KL LI + N +DG V G
Sbjct: 145 VDHYTYAFMGDGCMMEGIS-HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM 203
Query: 276 ELEAHFYGVGWNVIKVI 292
EA+ GW+VI+ I
Sbjct: 204 RFEAY----GWHVIRDI 216
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 41.7 bits (99), Expect = 0.001
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G ++ I A AQ D+P+ + ++++ GY
Sbjct: 240 GENVVGIEEAIANAQAVTDRPSFIALRTVIGYP 272
Score = 34.8 bits (81), Expect = 0.15
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 223 IWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQELEA 279
I+++ DG+++E + SE S+AA ++L NLI+ + N ++ A
Sbjct: 171 IYVIASDGDIEEGVT-SEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRA 229
Query: 280 HFYGVGWNVIKVIW 293
YG W+V +V
Sbjct: 230 --YG--WHVQEVEG 239
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 39.0 bits (92), Expect = 0.007
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 361 GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G DL I A A+ +KDKPT++ + + GYG
Sbjct: 220 GNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253
Score = 32.8 bits (76), Expect = 0.61
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 223 IWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQELEA 279
++ GDG + E S SE S+A KL NLI I + N +DG + + + EA
Sbjct: 151 TYVFLGDGCLQEGIS-SEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEA 209
Query: 280 HFYGVGWNVIKVI 292
YG W V+ V
Sbjct: 210 --YG--WEVLYVE 218
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 36.3 bits (84), Expect = 0.010
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 832 FGCSDTRKKLRDFFENIIHMKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVES 890
R + F + + +P + ++ V K+G+ + L +E+
Sbjct: 7 HHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIET 66
Query: 891 EKVSMEIPSSHNGVVREIKVKVGDK-ISKDSQILILEEQ 928
+K ++ G + +I V G + + + + I+ E+
Sbjct: 67 DKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.015
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 412 DHQGIKSIRDFLKLPIPDSELSL 434
+ Q +K ++ LKL DS +L
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
Score = 32.2 bits (72), Expect = 0.37
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 14 KEWISALKSVIKIEGPNRAYYL-IKKMIK 41
K+ + L++ +K+ + A L IK ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 1.3
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 446 EIQYLKNCRKKLGGYLPKRRQKSDEKLLIPPLEAFKKILE 485
E Q LK + L Y D P L A K +E
Sbjct: 18 EKQALKKLQASLKLYAD------DSA---PAL-AIKATME 47
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 37.9 bits (89), Expect = 0.018
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 361 GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G D + A A+ K KP +++ + G+G
Sbjct: 220 GDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFG 253
Score = 32.1 bits (74), Expect = 0.93
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 219 INRKIWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQ 275
++ ++ CGDG + E E +S+A L+ LI+I + N +DG + Q
Sbjct: 147 VDHYTYVYCGDGCLMEGVC-QEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQCHQ 205
Query: 276 ELEAHFYGVGWNVIKVI 292
+ A G++VI+V
Sbjct: 206 KYVAM----GFHVIEVK 218
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 37.4 bits (88), Expect = 0.025
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 208 KYLHARKITNTINRKIWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGP 266
K ++ I+ KI+ LCGDG++ E S E S+A KLDN I+I + N ++G
Sbjct: 131 KKAQNLLGSDLIDHKIYCLCGDGDLQEGIS-YEACSLAGLHKLDNFILIYDSNNISIEGD 189
Query: 267 VRG--NSKIIQELEAHFYGVGWNVIKV 291
V N + EA G+ V+ +
Sbjct: 190 VGLAFNENVKMRFEAQ----GFEVLSI 212
Score = 37.1 bits (87), Expect = 0.031
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 356 WN-LTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
+ L+ GHD +I A + A K KP +++ K+ G
Sbjct: 207 FEVLSINGHDYEEINKALEQA-KKSTKPCLIIAKTTIAKG 245
Score = 29.4 bits (67), Expect = 6.6
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 41/158 (25%)
Query: 699 PGLKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWS 758
L + + G YLLK E + K L+ SG+ + L S L++ V S
Sbjct: 503 KALNEPVFGDVKNGAYLLK----ESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVS 558
Query: 759 ATSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFI 818
F L + Q AY E+ + ++ V A
Sbjct: 559 MPCFELFEK----------------QDKAYQ----ERLLKGEVIG----------VEAAH 588
Query: 819 PKG-RIY--KVLGTDGFGCSDTRKKLRDFF----ENII 849
+ KV G + FG S K + + F ++
Sbjct: 589 SNELYKFCHKVYGIESFGESGKDKDVFERFGFSVSKLV 626
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 34.6 bits (80), Expect = 0.026
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK-ISKDSQILILEEQ 928
K GD I + VE++K ++ S + +I V G + + + I I +
Sbjct: 29 KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 34.2 bits (79), Expect = 0.035
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK-ISKDSQILILEEQ 928
K G+ + +L +E++K + + +S +G++ +I V+ G K I S I ++ E+
Sbjct: 29 KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 36.7 bits (86), Expect = 0.040
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
GHD+ I +A A K DKP+++ K+ G G
Sbjct: 259 GHDVDAIDAAIAKA-KRSDKPSLICCKTRIGNG 290
Score = 33.7 bits (78), Expect = 0.38
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 219 INRKIWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQ 275
++ ++ GDG + E S E S+A KL+ LI + + N +DG V + +
Sbjct: 186 VDHHTYVFLGDGCLMEGIS-HEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPK 244
Query: 276 ELEAHFYGVGWNVIKVI 292
EA+ GWNVI +
Sbjct: 245 RFEAY----GWNVIPNV 257
Score = 30.2 bits (69), Expect = 3.7
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 703 KGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWSATSF 762
Q + KG Y+L++ + E K+ LI +G+ + + + L + I + V S S
Sbjct: 575 DAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSS 634
Query: 763 TL 764
+
Sbjct: 635 DV 636
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 36.3 bits (85), Expect = 0.047
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 362 GHD-LRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
G+ I +A K A+ DKPT++ + + G+G
Sbjct: 231 GNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFG 264
Score = 32.8 bits (76), Expect = 0.63
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 223 IWILCGDGEMDEPESISE-ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQELEA 279
+++ GDG E + +E S+A L LI + N +DG + EA
Sbjct: 162 TYVILGDGCQMEGIA-NEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEA 220
Query: 280 HFYGVGWNVIKVI 292
GW+ I V
Sbjct: 221 --L--GWHTIWVK 229
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 35.5 bits (83), Expect = 0.078
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 362 GHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYG 394
+DL + A K+A K ++PT++ ++S G+G
Sbjct: 222 VNDLEALRKAIKLA-KLDERPTLIAVRSHIGFG 253
Score = 33.2 bits (77), Expect = 0.46
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 131 HGGDLIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYP-HPKLMPKFWQF 188
HG L+Y H L G L E++ +FRQ +G S P HP+
Sbjct: 70 HGSMLLYAVLH----------LTGYDLPLEELKSFRQ----WG-SKTPGHPE----RGHT 110
Query: 189 PTVSMGLGPL-----TAIHQA---RFLKYLHARKITNTINRKIWILCGDGEMDEPESISE 240
P V + GPL TA+ A R L R ++ ++L DG++ E S E
Sbjct: 111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVS-GE 169
Query: 241 -ISMAAREKLDNLIMIVNCNLQRLDGPVRG--NSKIIQELEAHFYGVGWNVIKVI 292
S+A L LI+ + N +DGP ++ A+ GW ++V
Sbjct: 170 AASLAGHWGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAY----GWQTLRVE 220
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase kinase
isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo
sapiens} PDB: 3crl_C*
Length = 87
Score = 31.6 bits (72), Expect = 0.18
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 873 VKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDK-ISKDSQILILEEQ 928
K+G+ + L +E++ ++ G + +I V G + + + + I+ E+
Sbjct: 27 KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer;
HET: CSF; 2.25A {Campylobacter jejuni}
Length = 291
Score = 31.7 bits (71), Expect = 1.0
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 409 KKIDHQGIKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQKS 468
K D + ++ + K + Y NS ++ ++ + +
Sbjct: 190 KNTDIKALEFLEKTYK----------IKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNY 239
Query: 469 DEKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILR 508
+ +LIP EA+ K + ++ Y +++ +LR
Sbjct: 240 TKDILIPSSEAYGKFSKNINFKKIKIKENIYYKLIKDLLR 279
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal,
dodecamer, allosteric, oxygen storage/transport complex;
HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2
PDB: 2gtl_C*
Length = 153
Score = 30.0 bits (67), Expect = 2.1
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 318 DGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLRKIYSAFKMAQK 377
D E + + P++ + + + E F H +I + +A
Sbjct: 25 DTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAH-ALRILNGLDLAIN 83
Query: 378 NKDKPTVL 385
D P L
Sbjct: 84 LLDDPPAL 91
>2uuz_A GAMS, HOST-nuclease inhibitor protein GAM; recbcd inhibitor,
putative DNA mimic; 2.3A {Bacteriophage lambda} PDB:
2uv1_A
Length = 99
Score = 28.7 bits (63), Expect = 2.7
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 9 DIVETKEWISALKSVIKIEGPNRAYYLIKKMIKFLLRHGMNVP-LFKNTAYINTISNNFD 67
D +E + W + + + E ++K I L + + L ++ A +I+ FD
Sbjct: 9 DRLEAQSWARHYQQLAREEKEAELADDMEKGIPQHLFESLCIDHLQRHGASKKSITRAFD 68
Query: 68 DDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSL 102
DD ++ +E + IR+ + IDS +
Sbjct: 69 DD----VEFQERMAEHIRYMVETIAHHQVDIDSEV 99
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 30.2 bits (69), Expect = 3.9
Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 53/193 (27%)
Query: 99 DSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEG---R 155
D S G S++ +++ + + + G + G RAFL+ +
Sbjct: 289 DYSTVG-WSAWPKGPNVILAEPDR-------------VTVDGRAYDGFTLRAFLQALAEK 334
Query: 156 LTEEQMINFRQEVDGYGLS-SYPHPKLMPKFWQFPTVSMGLGPLTAI------HQ---AR 205
+ V L+ + L ++ L T + R
Sbjct: 335 APARPASAQKSSVPTCSLTATSDEAGLTND-EIVRHINALLTSNTTLVAETGDSWFNAMR 393
Query: 206 FLKYLHARKITN----TI---------------NRKIWILCGDG--EMDEPESISEISMA 244
AR I +R+ ++ GDG ++ + E++
Sbjct: 394 MTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQL----TAQEVAQM 449
Query: 245 AREKLDNLIMIVN 257
R +L +I ++N
Sbjct: 450 VRYELPVIIFLIN 462
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase
maturation, [4Fe-4S] cluster, thiol redox binding
protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Length = 372
Score = 30.0 bits (68), Expect = 4.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 362 GHDLRKIYS---AFKMAQKNKDKPTVLL 386
G D+R +Y +++A++N DK V
Sbjct: 118 GFDVRIVYGIFDTYRIAKENPDKTVVHF 145
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 29.8 bits (67), Expect = 4.5
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 864 SEVEVSTVMVKIGDTIKIDQSLLV------VESEKVSMEIPSSHNGVVREIKVKVGDKIS 917
+ T VK G+ I+++++ + + V ++ G + ++ VK+G ++
Sbjct: 3 MDTTYLTEEVKRGN---IEKNVVATGSIESINTVDVGAQVS----GKITKLYVKLGQQVK 55
Query: 918 KDSQIL 923
K +L
Sbjct: 56 KG-DLL 60
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 29.2 bits (65), Expect = 6.0
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 515 RVVPILVDESRTFGM--EGLFRQIGIFSQVGQLYDPVDKDQ 553
+ + +LVD + E LF+ G+ ++ Q+ D +D
Sbjct: 201 KEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSI 241
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA,
translation; 2.8A {Thermus thermophilus} PDB: 2j03_J
3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I
3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Length = 173
Score = 28.4 bits (64), Expect = 6.6
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 777 MLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQV----RAFIPKGRIYKVL 827
M + + +A + ++LE++ G + +Y L A++ +A G V
Sbjct: 1 MPNKRNVELLATLKENLERAQGSFFL-VNYQGLPAKETHALRQALKQNGARLFVA 54
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus subsp}
PDB: 3iwh_A 3mzz_A
Length = 103
Score = 27.6 bits (62), Expect = 6.7
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 540 SQVGQLYDPVDKDQVIY------YREEKNGQILQ----EGINEAGGMGSWIAA 582
+ + +K+++ Y R K + L+ + +N GGM +W
Sbjct: 44 DTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDE 96
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 29.1 bits (65), Expect = 6.7
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 228 GDGEMDEPESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGW- 286
G G + ++ +++ +V R++ K I EL H GV +
Sbjct: 33 GTGTTGPSRVLEKLYGKTGLAREDIKKVVVTGYGRMN--YSDADKQISELSCHARGVNFI 90
Query: 287 --NVIKVIWSSSWD-KLLKCDQNGILKKIMMDT 316
+I D K+LK D NG L +M+
Sbjct: 91 IPETRTIIDIGGQDAKVLKLDNNGRLLNFLMND 123
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 29.4 bits (66), Expect = 6.8
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 43/150 (28%)
Query: 142 SAP---GVY--ARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKF-----WQFPTV 191
SAP VY A L+ E ++N RQ + PHP +P F W P V
Sbjct: 307 SAPNYLDVYNNKAAVLK---YENNVMNIRQ------FNCSPHPYWLPNFMDVFTWSLPFV 357
Query: 192 SMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEPESISEISMAA--REKL 249
K+T + + +C D E+ E + + AA +E +
Sbjct: 358 --------------------GEKVTE-MLVNVLNICSDDELGSEEDGFDGATAAARKEVI 396
Query: 250 DNLIMIVNCNLQRLDGPVRGNSKIIQELEA 279
N I + + R+ +R S+ + L+
Sbjct: 397 RNKIRAIG-KMARVFSVLREESESVLTLKG 425
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 28.5 bits (64), Expect = 9.2
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 503 LNTILRDKNIGNRVVPILVDESRTF---GM--EGLFRQIGIFSQVGQLYDPVDKDQV 554
N + +P + ++ T + EGLFR+ G ++ L + VD +
Sbjct: 69 FNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEG 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,660,216
Number of extensions: 933004
Number of successful extensions: 2549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2486
Number of HSP's successfully gapped: 107
Length of query: 929
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 827
Effective length of database: 3,853,851
Effective search space: 3187134777
Effective search space used: 3187134777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.9 bits)