RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2375
(929 letters)
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
PP module {Escherichia coli [TaxId: 562]}
Length = 415
Score = 386 bits (993), Expect = e-126
Identities = 225/412 (54%), Positives = 303/412 (73%)
Query: 56 TAYINTISNNFDDDFPGNIKIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHI 115
+ YINTI ++PGN+++E ++S IRWNA+ V+RA+K D LGGH++SF S A I
Sbjct: 2 SNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATI 61
Query: 116 LEIGFNHFWRAPTHSHGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSS 175
++ FNHF+RA GGDL+Y QGH +PGVYARAFLEGRLT+EQ+ NFRQEV G GLSS
Sbjct: 62 YDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSS 121
Query: 176 YPHPKLMPKFWQFPTVSMGLGPLTAIHQARFLKYLHARKITNTINRKIWILCGDGEMDEP 235
YPHPKLMP+FWQFPTVSMGLGP+ AI+QA+FLKYL R + +T + ++ GDGEMDEP
Sbjct: 122 YPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEP 181
Query: 236 ESISEISMAAREKLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSS 295
ES I++A REKLDNL+ ++NCNLQRLDGPV GN KII ELE F G GWNVIKV+W S
Sbjct: 182 ESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGS 241
Query: 296 SWDKLLKCDQNGILKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDI 355
WD+LL+ D +G L ++M +T+DG+YQ ++SK+ ++R++FFGK+P+ ++ + +DE I
Sbjct: 242 RWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQI 301
Query: 356 WNLTFGGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQG 415
W L GGHD +KIY+AFK AQ+ K K TV+L +IKGYG+G E +N AH +KK++ G
Sbjct: 302 WALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDG 361
Query: 416 IKSIRDFLKLPIPDSELSLVPFYKPSKNSPEIQYLKNCRKKLGGYLPKRRQK 467
++ IRD +P+ D+++ +P+ + S E YL R+KL GYLP R+
Sbjct: 362 VRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPN 413
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component,
Pyr module {Escherichia coli [TaxId: 562]}
Length = 230
Score = 320 bits (821), Expect = e-104
Identities = 149/231 (64%), Positives = 184/231 (79%), Gaps = 3/231 (1%)
Query: 470 EKLLIPPLEAFKKILEPTLNERKISTTYAYVRILNTILRDKNIGNRVVPILVDESRTFGM 529
EKL +P L+ F +LE ++ISTT A+VR LN +L++K+I +R+VPI+ DE+RTFGM
Sbjct: 1 EKLELPSLQDFGALLEEQ--SKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGM 58
Query: 530 EGLFRQIGIFSQVGQLYDPVDKDQVIYYREEKNGQILQEGINEAGGMGSWIAAATSYSTS 589
EGLFRQIGI+S GQ Y P D++QV YY+E++ GQILQEGINE G SW+AAATSYST+
Sbjct: 59 EGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTN 118
Query: 590 NCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVL 649
N MIPF+ +YSMFG QRIGDL W AGD +ARGFLIGGTSGRTT+NGEGLQHEDGHSH+
Sbjct: 119 NLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQ 178
Query: 650 ASTIPNCIPYDPTFAHEVAIIIHHGLHCMIS-NQEDVFYYITVMNENYSHP 699
+ TIPNCI YDP +A+EVA+I+H GL M QE+V+YYIT +NENY P
Sbjct: 179 SLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMP 229
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 139 bits (351), Expect = 1e-36
Identities = 55/273 (20%), Positives = 96/273 (35%), Gaps = 32/273 (11%)
Query: 76 IEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGD- 134
I++ S IR A+ V +AN GH + +A + ++ PT+ +
Sbjct: 5 IDKLAVSTIRILAVDTVSKAN------SGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINR 58
Query: 135 --LIYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTV 191
+ GH+ +Y+ L G L+ E + FRQ G + HP+ + T
Sbjct: 59 DRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ----LGSRTPGHPEFELPGVEVTTG 114
Query: 192 SMGLGPLTAIHQARFLKYLHAR---KITNTINRKIWILCGDGEMDEPESISEISMAAREK 248
+G G A+ A L A + ++ GDG + E S S+A K
Sbjct: 115 PLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLK 174
Query: 249 LDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGI 308
L NLI I + N +DG + +++ + GW V+ V + +
Sbjct: 175 LGNLIAIYDDNKITIDGAT--SISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIA-- 230
Query: 309 LKKIMMDTLDGEYQNYRSKNSDFIRKNFFGKHP 341
+ + + K + G
Sbjct: 231 -----------QAKLSKDKPTLIKMTTTIGYGS 252
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 121 bits (304), Expect = 1e-30
Identities = 63/315 (20%), Positives = 107/315 (33%), Gaps = 31/315 (9%)
Query: 80 LQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWRA----PTHSHGGDL 135
L + IR +M V +A GH + +A I E+ + F + P+ +
Sbjct: 6 LANAIRALSMDAVQKAK------SGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRF 59
Query: 136 IYIQGHSAPGVYARAFLEG-RLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMG 194
+ GH + +Y+ L G L E++ NFRQ + + + T +G
Sbjct: 60 VLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQL---HSKTPGHPEVGYTAGVETTTGPLG 116
Query: 195 LGPLTAIHQARFLKYL---HARKITNTINRKIWILCGDGEMDEPESISEISMAAREKLDN 251
G A+ A K L R + ++ + GDG M E S S+A KL
Sbjct: 117 QGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGK 176
Query: 252 LIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILKK 311
LI + N +DG V G + F GW+VI+ I + + +
Sbjct: 177 LIAFYDDNGISIDGHVEGW--FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVT 234
Query: 312 -----IMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNLTFGGHDLR 366
+M T+ G ++ D L +
Sbjct: 235 DKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPF-------EIPS 287
Query: 367 KIYSAFKMAQKNKDK 381
+IY+ + + + K
Sbjct: 288 EIYAQWDAKEAGQAK 302
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component,
C-domain {Escherichia coli [TaxId: 562]}
Length = 186
Score = 115 bits (288), Expect = 6e-30
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 6/147 (4%)
Query: 701 LKKGQEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREILASKI-LLQEWDIDSAVWSA 759
+ +G E+GI KG+Y L+ K K VQL+GSG+ILR + + L +++ + S V+S
Sbjct: 1 MPEGAEEGIRKGIYKLETIEGSKGK--VQLLGSGSILRHVREAAEILAKDYGVGSDVYSV 58
Query: 760 TSFTLLARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIP 819
TSFT LARDGQ+ ERWNMLHP + +V YI + + P + +TDYM+LFAEQVR ++P
Sbjct: 59 TSFTELARDGQDCERWNMLHPLETPRVPYIAQ--VMNDAPAVASTDYMKLFAEQVRTYVP 116
Query: 820 KGRIYKVLGTDGFGCSDTRKKLRDFFE 846
VLGTDGFG SD+R+ LR FE
Sbjct: 117 ADDYR-VLGTDGFGRSDSRENLRHHFE 142
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 118 bits (295), Expect = 2e-29
Identities = 56/319 (17%), Positives = 109/319 (34%), Gaps = 34/319 (10%)
Query: 78 EHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHSHGG 133
E + + IR A +V GH + +A + + + + P
Sbjct: 5 EKVANCIRCLAADIVQGGK------SGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRD 58
Query: 134 DLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSM 193
+ GH YA + G + ++ DG +P + P + T +
Sbjct: 59 RFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ-DGSRTPGHPERFVTP-GVEVTTGPL 116
Query: 194 GLGPLTAIHQARFLKYLHAR---KITNTINRKIWILCGDGEMDEPESISEISMAAREKLD 250
G G A+ A +L A N ++ ++ CGDG + E +S+A L+
Sbjct: 117 GQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALE 176
Query: 251 NLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNGILK 310
LI+I + N +DG + ++ + +G++VI+V + + L+
Sbjct: 177 KLIVIYDSNYISIDGSTSLS--FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALA---- 230
Query: 311 KIMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLKMIEEMSDEDIWNL-TFGGHDLRK-- 367
G+ + + + G + +EDI N+ G D +K
Sbjct: 231 --EAKATKGKPKMIVQTTTIGFGSSKQGTEKVHGAP---LGEEDIANIKAKFGRDPQKKY 285
Query: 368 -----IYSAFKMAQKNKDK 381
+ + F+M
Sbjct: 286 DVDDDVRAVFRMHIDKCSA 304
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 113 bits (283), Expect = 9e-28
Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 22/284 (7%)
Query: 75 KIEEHLQSLIRWNAMALVIRANKIDSSLGGHLSSFASLAHILEIGFNHFWR----APTHS 130
++ E + IR+ A+ V +AN GH A + + ++ R P
Sbjct: 5 ELLEKSVNTIRFLAIDAVEKAN------SGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWF 58
Query: 131 HGGDLIYIQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPT 190
+ + GH YA L G + ++ + G +P P + T
Sbjct: 59 NRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETP-GVEVTT 117
Query: 191 VSMGLGPLTAIHQARFLKYLHAR---KITNTINRKIWILCGDGEMDEPESISEISMAARE 247
+G G A+ A K+L AR + ++ +++ GDG E + S+A
Sbjct: 118 GPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHW 177
Query: 248 KLDNLIMIVNCNLQRLDGPVRGNSKIIQELEAHFYGVGWNVIKVIWSSSWDKLLKCDQNG 307
L LI + N +DG +++ F +GW+ I V ++ ++
Sbjct: 178 GLGKLIAFYDDNHISIDGDTEIA--FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKE 235
Query: 308 ILKK------IMMDTLDGEYQNYRSKNSDFIRKNFFGKHPKLLK 345
I + T G ++ + K + +
Sbjct: 236 AKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 279
Score = 36.7 bits (84), Expect = 0.010
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 361 GGHDLRKIYSAFKMAQKNKDKPTVLLIKSIKGYGLGRFGEARNTAHNIKKIDHQGIKSIR 420
G I +A K A+ DKPT++ + + G+G + H + +++ R
Sbjct: 222 GNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGSP-NKANSYSVHGSALGAKE-VEATR 279
Query: 421 DFLKLPIPDSELSLVPFYKPS 441
L P F+ P
Sbjct: 280 QNLGWPYD-------TFFVPE 293
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 79.1 bits (195), Expect = 1e-18
Identities = 33/74 (44%), Positives = 55/74 (74%)
Query: 855 IKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGD 914
+KVP+IG V++ V V +GDTI +D +L+ +E++K +M++P+ GVV+E+KVKVGD
Sbjct: 5 LKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD 64
Query: 915 KISKDSQILILEEQ 928
KIS+ I+++E +
Sbjct: 65 KISEGGLIVVVEAE 78
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 78.3 bits (193), Expect = 2e-18
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 851 MKKIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKV 910
M K + VP+IG EVEV+ VMVK+GD + +QSL+ VE +K SME+P+ GVV+E+KV
Sbjct: 1 MVKEVNVPDIGG-DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Query: 911 KVGDKISKDSQILILEEQ 928
VGDK+ S I+I E +
Sbjct: 60 NVGDKVKTGSLIMIFEVE 77
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 77.1 bits (190), Expect = 7e-18
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 851 MKKII--KVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVRE 907
M +++ K+ +IG+ + EV V VK GDT+ S+ V+S+K S+ I S ++GV+++
Sbjct: 1 MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 908 IKVKVGDKISKDSQILILEEQ 928
+ + D ++ +E +
Sbjct: 61 LYYNLDDIAYVGKPLVDIETE 81
Score = 26.7 bits (59), Expect = 3.4
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVS 894
+ + + D + + L+ +E+E +
Sbjct: 58 IKKLYYNLDDIAYVGKPLVDIETEALK 84
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 75.6 bits (186), Expect = 2e-17
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
K+P+IG+ + E E+ VK GD + D L V+++K +EIPS G V EI V G
Sbjct: 4 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63
Query: 914 DKISKDSQILILEE 927
+ ++ L+
Sbjct: 64 TVATVGQTLITLDA 77
Score = 27.8 bits (62), Expect = 1.3
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 898 PSSHNGVVREIKVKVGDKISKDSQILILEEQ 928
H G + + VK GD++++D + ++
Sbjct: 11 EGIHEGEIVKWFVKPGDEVNEDDVLCEVQND 41
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 75.3 bits (185), Expect = 2e-17
Identities = 35/75 (46%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 853 KIIKVPNIGDLSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKV 912
+II+VP+IG + EV ++VK GD I+++Q L+V+ES K SME+PS GVV+ + VK+
Sbjct: 2 EIIRVPDIGG--DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 913 GDKISKDSQILILEE 927
GDK+ + I+ LE
Sbjct: 60 GDKLKEGDAIIELEP 74
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 75.2 bits (185), Expect = 2e-17
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
I VP++ + +++ V+T K GD + D+ L+ +E++KV +E+P+S +G++ + G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 914 DKISKDSQILILEE 927
++ + L E
Sbjct: 65 TTVTSRQILGRLRE 78
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 74.1 bits (182), Expect = 6e-17
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 855 IKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVG 913
IK P + +++ V+T K G+ +K D+ ++ +E++KV ME+ + +GV+ EI G
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Query: 914 DKISKDSQILILEE 927
D + + L E
Sbjct: 64 DTVLSGELLGKLTE 77
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 62.6 bits (152), Expect = 1e-12
Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 850 HMKKIIKVPNIGD-LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREI 908
HM+ + +P + ++ V K+G+ + L +E++K ++ G + +I
Sbjct: 5 HMQ--VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 62
Query: 909 KVKVGDK-ISKDSQILILEE 927
V G + + + + I+ E
Sbjct: 63 LVPEGTRDVPLGTPLCIIVE 82
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 54.6 bits (131), Expect = 4e-10
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 854 IIKVPNIGD--LSEVEVSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVK 911
I++ P +G + + +++G + + +L +VE+ K+ +I + +G V+ I V+
Sbjct: 6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65
Query: 912 VGDKISKDSQILILE 926
G + D ++++E
Sbjct: 66 SGQPVEFDEPLVVIE 80
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 53.4 bits (128), Expect = 1e-09
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 868 VSTVMVKIGDTIKIDQSLLVVESEKVSMEIPSSHNGVVREIKVKVGDKISKDSQILIL 925
VS ++VK GDT+K Q++LV+E+ K+ EI + +G V ++ VK D + ++ +
Sbjct: 19 VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
Score = 34.1 bits (78), Expect = 0.008
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 896 EIPSSHNGVVREIKVKVGDKISKDSQILILE 926
EIP+ G V +I VK GD + +L+LE
Sbjct: 10 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize
(Zea mays) [TaxId: 4577]}
Length = 136
Score = 52.9 bits (126), Expect = 8e-09
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 26/146 (17%)
Query: 708 GIIKGLYLLKNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWSATSFTLLAR 767
G+ KG Y + +++ K + ++G+G+ L + L++ V S S+ L
Sbjct: 7 GVEKGGYTISDNSTGN-KPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDE 65
Query: 768 DGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIYKVL 827
E + + I +T + + G K +
Sbjct: 66 QSDEYKESVLPAAVT------------ARISIEAGSTLGWQKYV---------GAQGKAI 104
Query: 828 GTDGFGCSDTRKKLRDFF----ENII 849
G D FG S + + E+II
Sbjct: 105 GIDKFGASAPAGTIYKEYGITVESII 130
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 46.4 bits (109), Expect = 1e-06
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 30/157 (19%)
Query: 705 QEKGIIKGLYLLKNHNNEKSKLKVQLIGSGAILREILASKILLQEWDIDSAVWSATSFTL 764
Q I +G Y+LK+ + ++ I +G+ + +A+ L + + V S S
Sbjct: 5 QLANIARGGYVLKDCAG---QPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDA 61
Query: 765 LARDGQETERWNMLHPTKKQKVAYITKSLEKSIGPIIVATDYMRLFAEQVRAFIPKGRIY 824
+ + + DY + G
Sbjct: 62 FDKQDAAYRESVLPKAVTARVA------------VEAGIADYWYKYV---------GLNG 100
Query: 825 KVLGTDGFGCSDTRKKLRDFF----ENIIHMKKIIKV 857
++G FG S + L + F +N++ K ++
Sbjct: 101 AIVGMTTFGESAPAELLFEEFGFTVDNVV--AKAKEL 135
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 29.6 bits (66), Expect = 0.32
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 848 IIHMKKIIKVPNIGDLSEVEVSTV-----MVKIGDTIKIDQSLLVVESEKVSMEIPSSHN 902
+I+ + K+P+ G++ V V V + + + L E ++
Sbjct: 1 MIYSRS--KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVL 58
Query: 903 GVVREIKVKV 912
R++ VKV
Sbjct: 59 KENRKVIVKV 68
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525
{Helicobacter pylori [TaxId: 210]}
Length = 323
Score = 31.0 bits (69), Expect = 0.58
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 194 GLGPLTAIHQARFLKYLHARKITN-TINR--KIWILCGDGEMDEPESISEISMAAREKLD 250
L PL + F +L IT N +W+L +GE +P + + + +L
Sbjct: 19 ALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEW-QPFDVRDRKAFSLSRLM 77
Query: 251 NLI-MIVNCNLQRLDGP 266
+ + + +D
Sbjct: 78 HFARCCASFKKKTIDNY 94
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize
(Zea mays) [TaxId: 4577]}
Length = 192
Score = 29.8 bits (66), Expect = 1.2
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 6/107 (5%)
Query: 569 GINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWLAGDIRARGFLIGGT 628
G+ E G A + + +P+ + +F G + + G + T
Sbjct: 73 GVREHGMG----AICNGIALHSPGFVPYCATFFVFTDYMRGAMR--ISALSEAGVIYVMT 126
Query: 629 SGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGL 675
+ +G H+ V +PN + P +E A +
Sbjct: 127 HDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAV 173
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7,
DNA-binding domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 86
Score = 27.8 bits (62), Expect = 1.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 451 KNCRKKLGGYLPKRRQKSDEK 471
++CR+KL + +R++K +K
Sbjct: 62 RSCRRKLERHNNRRKRKPVDK 82
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 28.6 bits (63), Expect = 2.8
Identities = 21/191 (10%), Positives = 61/191 (31%), Gaps = 19/191 (9%)
Query: 507 LRDKNIGNRVVPILVD------ESRTFGMEGLFRQIGIFSQVGQLYDPVDKDQVIYYREE 560
L++KN +PI++ ++ EG+FR+ V ++ + + + +
Sbjct: 14 LQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQY 73
Query: 561 KNGQILQEGINEAGGMGSWIAAATSYSTSNCIMIPFFTFYSMFGLQRIGDLAWL-----A 615
+ A + +++ + + F ++ QR+ +
Sbjct: 74 NALHLP------AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPE 127
Query: 616 GDIRARGFLIGGTSGRTTINGEGLQHEDGHSHVLASTIPNCIPYDPTFAHEVAIIIHHGL 675
+ + FL + + + + V + D + I+
Sbjct: 128 ENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNL--LWAKDAAITLKAINPINTFT 185
Query: 676 HCMISNQEDVF 686
++ +Q ++F
Sbjct: 186 KFLLDHQGELF 196
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 27.8 bits (62), Expect = 4.1
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 435 VPFYKPSK----NSPEI-----QYLKNCRKKLGGYLPKRR--QKSDEKLL 473
+P+ K +I L +KL YL ++R Q++ +KLL
Sbjct: 114 IPYKSAGKESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLL 163
>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA
{Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 27.9 bits (62), Expect = 4.4
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 630 GRTTINGEGLQHEDGHSHVLASTIPNCIP----YDPTFAHEVAIIIHHGLHCMISNQ 682
GR + ++ GHS + P Y T + +I+ G+ +
Sbjct: 60 GRYELRNGEIRARYGHSIPVNVEPLPGEPPPILYHGTTEEALPLIMERGIMRGRRLK 116
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 27.3 bits (59), Expect = 8.9
Identities = 15/152 (9%), Positives = 33/152 (21%), Gaps = 8/152 (5%)
Query: 85 RWNAMALVIRANKID-------SSLGGHLSSFASLAHILEIGFNHFWRAPTHSHGGDLIY 137
N L+ N +D S + I + + +Y
Sbjct: 24 NINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVY 83
Query: 138 IQGHSAPGVYARAFLEGRLTEEQMINFRQEVDGYGLSSYPHPKLMPKFWQFPTVSMGLGP 197
I + + R L ++ + + F ++ +
Sbjct: 84 IYFSAVDALGGRVNL-ALVSNRRADEVFVLSPVRQGGRPLLGIRIGNDAFFTAHAIAMRN 142
Query: 198 LTAIHQARFLKYLHARKITNTINRKIWILCGD 229
A + W++ GD
Sbjct: 143 NDAPALVEEVYNFFRDSRDPVHQALNWMILGD 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,617,034
Number of extensions: 181332
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 42
Length of query: 929
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 835
Effective length of database: 1,116,976
Effective search space: 932674960
Effective search space used: 932674960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)