Query psy2376
Match_columns 896
No_of_seqs 614 out of 3739
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:23:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0275 Predicted S-adenosylme 100.0 3.9E-99 8E-104 778.1 27.3 274 390-667 10-288 (314)
2 PF01795 Methyltransf_5: MraW 100.0 1.2E-93 2.6E-98 759.0 21.6 274 390-667 7-286 (310)
3 TIGR00006 S-adenosyl-methyltra 100.0 5.4E-91 1.2E-95 741.2 29.4 268 390-665 7-279 (305)
4 PRK00050 16S rRNA m(4)C1402 me 100.0 7.6E-86 1.7E-90 702.5 29.0 262 390-665 6-269 (296)
5 KOG2782|consensus 100.0 4E-69 8.7E-74 520.9 10.9 246 390-639 30-285 (303)
6 TIGR00486 YbgI_SA1388 dinuclea 100.0 1.9E-54 4.1E-59 457.9 22.5 223 664-895 7-231 (249)
7 PF01784 NIF3: NIF3 (NGG1p int 100.0 1.6E-54 3.5E-59 457.1 15.1 224 666-895 5-234 (241)
8 PRK10799 metal-binding protein 100.0 2.1E-52 4.5E-57 441.8 22.6 220 665-894 8-228 (247)
9 COG0327 Uncharacterized conser 100.0 3.1E-49 6.6E-54 415.1 21.4 222 665-895 8-232 (250)
10 COG0728 MviN Uncharacterized m 100.0 1.5E-37 3.3E-42 353.3 48.9 382 1-389 7-509 (518)
11 TIGR01695 mviN integral membra 100.0 5.9E-34 1.3E-38 335.9 52.1 383 2-396 1-501 (502)
12 KOG4131|consensus 100.0 2.4E-37 5.2E-42 303.5 16.6 213 667-891 17-245 (272)
13 PF03023 MVIN: MviN-like prote 100.0 3.8E-32 8.3E-37 314.3 43.8 319 28-353 1-437 (451)
14 PRK10459 colanic acid exporter 100.0 1.1E-25 2.5E-30 264.8 41.6 368 2-402 6-482 (492)
15 TIGR02900 spore_V_B stage V sp 100.0 1.5E-24 3.3E-29 254.8 44.5 359 3-382 1-487 (488)
16 COG0534 NorM Na+-driven multid 99.9 6.5E-23 1.4E-27 237.4 37.7 278 1-288 17-322 (455)
17 PRK09575 vmrA multidrug efflux 99.9 2.2E-21 4.8E-26 225.7 38.3 278 2-288 13-316 (453)
18 PRK10367 DNA-damage-inducible 99.9 2.2E-21 4.8E-26 224.3 37.6 279 1-288 9-313 (441)
19 PRK10189 MATE family multidrug 99.9 6.4E-21 1.4E-25 222.6 40.1 280 2-288 30-340 (478)
20 PRK15099 O-antigen translocase 99.9 4.7E-21 1E-25 220.7 36.9 271 1-288 1-295 (416)
21 PRK00187 multidrug efflux prot 99.9 7E-21 1.5E-25 222.0 38.0 278 1-288 10-317 (464)
22 PRK01766 multidrug efflux prot 99.9 3E-20 6.6E-25 216.6 37.5 277 2-288 13-320 (456)
23 TIGR00797 matE putative efflux 99.9 5.5E-19 1.2E-23 197.8 38.4 269 10-288 2-297 (342)
24 COG2244 RfbX Membrane protein 99.8 7.9E-17 1.7E-21 189.1 38.6 264 2-288 7-295 (480)
25 PF01943 Polysacc_synt: Polysa 99.6 2.5E-13 5.4E-18 146.2 32.0 248 3-274 1-273 (273)
26 PF13440 Polysacc_synt_3: Poly 99.4 5.6E-10 1.2E-14 118.9 30.0 228 19-273 2-251 (251)
27 PRK00187 multidrug efflux prot 99.0 5.9E-08 1.3E-12 113.5 23.0 161 2-168 237-400 (464)
28 PRK09575 vmrA multidrug efflux 98.9 1.1E-07 2.4E-12 111.0 23.3 159 3-167 236-394 (453)
29 TIGR01695 mviN integral membra 98.9 6.5E-07 1.4E-11 105.9 29.8 160 2-166 224-385 (502)
30 PRK01766 multidrug efflux prot 98.9 1E-07 2.2E-12 111.4 22.2 159 2-168 240-398 (456)
31 PRK10189 MATE family multidrug 98.9 1.7E-07 3.7E-12 110.0 23.9 159 2-168 260-418 (478)
32 PF01554 MatE: MatE; InterPro 98.9 8.6E-10 1.9E-14 109.4 2.6 151 10-168 2-152 (162)
33 COG0534 NorM Na+-driven multid 98.8 2E-07 4.3E-12 108.6 21.0 161 2-170 242-402 (455)
34 PF03023 MVIN: MviN-like prote 98.8 4.9E-06 1.1E-10 96.9 30.0 161 2-167 199-361 (451)
35 KOG1347|consensus 98.7 1.7E-05 3.6E-10 92.3 31.5 275 1-288 28-330 (473)
36 COG0728 MviN Uncharacterized m 98.7 4E-05 8.8E-10 88.8 32.3 166 1-171 232-402 (518)
37 PF06962 rRNA_methylase: Putat 98.6 2.2E-08 4.7E-13 95.0 4.1 51 433-486 1-56 (140)
38 PRK10459 colanic acid exporter 98.6 5.2E-05 1.1E-09 89.5 31.4 159 2-170 208-366 (492)
39 PRK10367 DNA-damage-inducible 98.6 2.5E-06 5.4E-11 99.2 19.8 157 3-167 234-393 (441)
40 TIGR02900 spore_V_B stage V sp 98.5 3.8E-05 8.3E-10 90.4 27.1 155 2-166 226-389 (488)
41 PF14667 Polysacc_synt_C: Poly 98.4 1.1E-05 2.5E-10 78.4 17.9 97 289-389 50-146 (146)
42 TIGR00797 matE putative efflux 98.3 1.5E-05 3.3E-10 89.1 16.2 74 214-288 1-74 (342)
43 PRK15099 O-antigen translocase 98.1 0.00039 8.5E-09 80.2 22.6 150 2-162 216-365 (416)
44 PF13659 Methyltransf_26: Meth 98.1 2.3E-05 5E-10 73.1 10.2 76 407-487 1-81 (117)
45 COG2244 RfbX Membrane protein 98.1 0.00059 1.3E-08 80.2 24.4 155 2-165 214-368 (480)
46 TIGR00446 nop2p NOL1/NOP2/sun 97.9 0.00023 5E-09 76.8 15.9 77 406-487 71-151 (264)
47 PRK14903 16S rRNA methyltransf 97.9 0.0002 4.4E-09 82.6 16.0 80 406-489 237-320 (431)
48 PF01209 Ubie_methyltran: ubiE 97.9 4E-05 8.7E-10 80.8 9.4 90 389-486 33-126 (233)
49 PF05175 MTS: Methyltransferas 97.8 0.00011 2.5E-09 73.6 9.9 119 407-637 32-156 (170)
50 PRK14902 16S rRNA methyltransf 97.8 0.00034 7.4E-09 81.3 14.7 78 406-487 250-331 (444)
51 PF04506 Rft-1: Rft protein; 97.7 0.0087 1.9E-07 70.9 26.3 74 206-279 253-329 (549)
52 PF09445 Methyltransf_15: RNA 97.7 4.3E-05 9.3E-10 75.1 5.9 127 408-572 1-135 (163)
53 TIGR01934 MenG_MenH_UbiE ubiqu 97.6 0.0007 1.5E-08 70.8 12.3 83 393-483 29-113 (223)
54 TIGR03533 L3_gln_methyl protei 97.4 0.0019 4E-08 70.5 14.0 70 407-483 122-196 (284)
55 PRK00107 gidB 16S rRNA methylt 97.4 0.00083 1.8E-08 68.3 10.5 69 407-482 46-118 (187)
56 PF12847 Methyltransf_18: Meth 97.4 0.00041 8.9E-09 64.0 7.4 73 406-484 1-78 (112)
57 PRK14901 16S rRNA methyltransf 97.4 0.002 4.4E-08 74.7 14.6 82 406-488 252-337 (434)
58 PF01554 MatE: MatE; InterPro 97.4 0.00017 3.7E-09 71.2 4.6 74 214-288 1-74 (162)
59 KOG2864|consensus 97.4 0.4 8.6E-06 54.0 30.8 82 207-288 240-324 (530)
60 PRK11805 N5-glutamine S-adenos 97.2 0.0041 8.8E-08 68.5 13.9 69 408-483 135-208 (307)
61 TIGR00138 gidB 16S rRNA methyl 97.1 0.0063 1.4E-07 61.7 12.6 70 407-483 43-116 (181)
62 PF13847 Methyltransf_31: Meth 97.1 0.0014 3E-08 64.4 7.4 75 405-483 2-80 (152)
63 PRK00377 cbiT cobalt-precorrin 97.1 0.0022 4.7E-08 66.1 9.0 75 406-484 40-119 (198)
64 TIGR02752 MenG_heptapren 2-hep 97.1 0.0022 4.7E-08 67.7 9.1 87 391-485 33-123 (231)
65 PRK13944 protein-L-isoaspartat 97.0 0.0018 3.9E-08 67.1 7.8 87 392-486 61-152 (205)
66 TIGR00080 pimt protein-L-isoas 97.0 0.002 4.3E-08 67.3 8.0 86 391-484 65-154 (215)
67 PRK14968 putative methyltransf 96.9 0.011 2.4E-07 60.0 12.8 71 406-485 23-99 (188)
68 COG2226 UbiE Methylase involve 96.9 0.002 4.3E-08 67.6 7.4 91 389-488 37-131 (238)
69 PRK14966 unknown domain/N5-glu 96.9 0.0099 2.1E-07 67.2 13.2 72 407-483 252-326 (423)
70 TIGR02469 CbiT precorrin-6Y C5 96.9 0.0035 7.6E-08 58.7 8.2 82 395-484 11-96 (124)
71 COG2242 CobL Precorrin-6B meth 96.8 0.0047 1E-07 61.6 8.5 82 395-485 26-111 (187)
72 TIGR01177 conserved hypothetic 96.8 0.0075 1.6E-07 67.3 11.4 70 406-483 182-255 (329)
73 PLN02233 ubiquinone biosynthes 96.8 0.0042 9.2E-08 66.9 9.1 78 406-488 73-157 (261)
74 PRK11188 rrmJ 23S rRNA methylt 96.8 0.005 1.1E-07 63.9 9.1 72 406-484 51-125 (209)
75 TIGR03534 RF_mod_PrmC protein- 96.8 0.021 4.6E-07 60.9 14.2 70 407-483 88-161 (251)
76 PF13649 Methyltransf_25: Meth 96.8 0.0037 8E-08 56.7 7.1 68 410-482 1-73 (101)
77 PRK00121 trmB tRNA (guanine-N( 96.7 0.0047 1E-07 63.9 8.2 87 390-484 28-119 (202)
78 cd02440 AdoMet_MTases S-adenos 96.7 0.017 3.6E-07 51.2 10.8 74 410-489 2-79 (107)
79 PRK13942 protein-L-isoaspartat 96.7 0.007 1.5E-07 63.1 9.2 88 390-485 63-154 (212)
80 TIGR00406 prmA ribosomal prote 96.5 0.034 7.4E-07 60.8 13.6 43 406-450 159-201 (288)
81 PRK00517 prmA ribosomal protei 96.5 0.028 6E-07 60.2 12.6 43 406-450 119-161 (250)
82 PTZ00146 fibrillarin; Provisio 96.4 0.0094 2E-07 64.3 8.2 75 406-484 132-210 (293)
83 KOG2730|consensus 96.4 0.0053 1.1E-07 62.1 5.7 62 407-471 95-161 (263)
84 TIGR00537 hemK_rel_arch HemK-r 96.4 0.045 9.7E-07 55.3 12.7 68 407-484 20-90 (179)
85 PF08704 GCD14: tRNA methyltra 96.4 0.0096 2.1E-07 63.0 7.9 93 395-494 32-131 (247)
86 KOG1347|consensus 96.4 0.044 9.5E-07 64.0 13.9 147 202-348 24-265 (473)
87 PRK07402 precorrin-6B methylas 96.3 0.018 3.9E-07 59.1 9.0 58 406-464 40-101 (196)
88 PRK03612 spermidine synthase; 96.2 4.1 8.8E-05 48.5 33.6 73 407-484 298-381 (521)
89 smart00650 rADc Ribosomal RNA 96.1 0.018 3.8E-07 57.7 8.0 82 392-484 2-85 (169)
90 PF07260 ANKH: Progressive ank 96.1 2.6 5.7E-05 45.7 26.0 252 3-273 13-306 (345)
91 PRK08287 cobalt-precorrin-6Y C 96.1 0.018 3.9E-07 58.7 8.1 77 395-482 23-103 (187)
92 PRK08317 hypothetical protein; 96.1 0.022 4.8E-07 59.9 9.1 87 393-487 9-98 (241)
93 PRK11036 putative S-adenosyl-L 96.1 0.018 4E-07 61.7 8.4 80 392-482 34-118 (255)
94 PLN02781 Probable caffeoyl-CoA 96.1 0.028 6E-07 59.5 9.5 78 407-484 69-152 (234)
95 PRK00216 ubiE ubiquinone/menaq 96.1 0.024 5.2E-07 59.8 9.0 85 393-485 41-130 (239)
96 COG0144 Sun tRNA and rRNA cyto 96.1 0.081 1.8E-06 59.5 13.6 83 405-489 155-242 (355)
97 PTZ00338 dimethyladenosine tra 96.0 0.014 3E-07 63.8 7.3 85 389-486 22-111 (294)
98 PRK13943 protein-L-isoaspartat 96.0 0.02 4.2E-07 63.4 7.9 88 393-488 70-161 (322)
99 COG4123 Predicted O-methyltran 95.9 0.013 2.9E-07 61.5 6.2 72 407-482 45-121 (248)
100 TIGR00091 tRNA (guanine-N(7)-) 95.9 0.028 6.1E-07 57.7 8.4 76 407-485 17-96 (194)
101 KOG2915|consensus 95.8 0.018 4E-07 60.1 6.4 90 389-484 91-185 (314)
102 TIGR00740 methyltransferase, p 95.8 0.029 6.3E-07 59.6 8.1 72 406-484 53-130 (239)
103 PRK10901 16S rRNA methyltransf 95.8 0.031 6.8E-07 64.7 9.0 85 397-488 238-325 (427)
104 PRK03522 rumB 23S rRNA methylu 95.7 0.033 7.1E-07 61.8 8.3 70 407-483 174-247 (315)
105 PRK14121 tRNA (guanine-N(7)-)- 95.7 0.037 7.9E-07 62.3 8.6 85 392-483 111-199 (390)
106 PRK14896 ksgA 16S ribosomal RN 95.6 0.029 6.3E-07 60.3 7.5 84 389-485 15-100 (258)
107 PRK14904 16S rRNA methyltransf 95.6 0.041 8.9E-07 64.1 9.1 77 406-488 250-330 (445)
108 COG2519 GCD14 tRNA(1-methylade 95.6 0.032 7E-07 58.3 7.2 84 393-485 84-172 (256)
109 KOG1663|consensus 95.5 0.063 1.4E-06 55.2 9.0 78 407-484 74-157 (237)
110 PRK01683 trans-aconitate 2-met 95.5 0.056 1.2E-06 58.0 9.3 84 391-485 19-102 (258)
111 PRK00274 ksgA 16S ribosomal RN 95.5 0.034 7.4E-07 60.3 7.5 70 391-466 30-100 (272)
112 PRK13168 rumA 23S rRNA m(5)U19 95.5 0.045 9.7E-07 63.7 8.9 68 391-464 285-356 (443)
113 PRK04266 fibrillarin; Provisio 95.4 0.064 1.4E-06 56.3 9.1 73 406-481 72-146 (226)
114 TIGR00438 rrmJ cell division p 95.4 0.049 1.1E-06 55.5 8.0 72 406-484 32-106 (188)
115 TIGR03704 PrmC_rel_meth putati 95.4 0.042 9.2E-07 58.8 7.9 72 407-483 87-160 (251)
116 TIGR00563 rsmB ribosomal RNA s 95.4 0.038 8.1E-07 64.0 7.9 86 397-489 232-322 (426)
117 TIGR02021 BchM-ChlM magnesium 95.4 0.047 1E-06 57.0 7.9 80 391-482 41-125 (219)
118 PF01728 FtsJ: FtsJ-like methy 95.3 0.085 1.8E-06 53.3 9.4 84 393-484 10-99 (181)
119 PRK15451 tRNA cmo(5)U34 methyl 95.3 0.036 7.9E-07 59.1 7.0 74 406-486 56-135 (247)
120 PLN02244 tocopherol O-methyltr 95.3 0.054 1.2E-06 60.7 8.6 87 390-483 100-193 (340)
121 PRK06922 hypothetical protein; 95.3 0.04 8.7E-07 65.4 7.6 74 407-484 419-495 (677)
122 PRK04457 spermidine synthase; 95.3 0.054 1.2E-06 58.3 8.1 73 407-484 67-144 (262)
123 PRK14103 trans-aconitate 2-met 95.3 0.052 1.1E-06 58.3 7.9 84 390-486 16-99 (255)
124 PRK11873 arsM arsenite S-adeno 95.3 0.054 1.2E-06 58.7 8.2 73 406-483 77-153 (272)
125 PHA03411 putative methyltransf 95.1 0.055 1.2E-06 57.8 7.5 70 407-484 65-134 (279)
126 TIGR00479 rumA 23S rRNA (uraci 95.1 0.077 1.7E-06 61.6 9.4 84 393-483 282-369 (431)
127 PF02353 CMAS: Mycolic acid cy 95.1 0.074 1.6E-06 57.5 8.5 73 390-467 49-126 (273)
128 PF01596 Methyltransf_3: O-met 95.1 0.12 2.6E-06 53.4 9.7 81 407-487 46-132 (205)
129 PF01135 PCMT: Protein-L-isoas 95.1 0.06 1.3E-06 55.8 7.5 90 391-488 60-153 (209)
130 PF02475 Met_10: Met-10+ like- 95.1 0.083 1.8E-06 54.2 8.3 79 406-491 101-184 (200)
131 PLN02476 O-methyltransferase 95.0 0.12 2.5E-06 55.8 9.6 79 407-485 119-203 (278)
132 PF04445 SAM_MT: Putative SAM- 95.0 0.033 7E-07 58.1 5.1 69 408-483 77-158 (234)
133 PRK10742 putative methyltransf 95.0 0.056 1.2E-06 56.8 6.8 70 407-483 87-171 (250)
134 PLN03075 nicotianamine synthas 94.9 0.071 1.5E-06 57.8 7.7 121 407-540 124-259 (296)
135 TIGR02085 meth_trns_rumB 23S r 94.9 0.073 1.6E-06 60.5 8.1 70 407-483 234-307 (374)
136 PRK05785 hypothetical protein; 94.9 0.039 8.5E-07 58.0 5.5 145 407-572 52-203 (226)
137 TIGR00536 hemK_fam HemK family 94.9 0.097 2.1E-06 57.1 8.8 55 407-462 115-174 (284)
138 PRK11933 yebU rRNA (cytosine-C 94.8 0.074 1.6E-06 61.8 8.1 80 405-488 112-195 (470)
139 COG2265 TrmA SAM-dependent met 94.8 0.073 1.6E-06 61.2 7.7 86 390-483 280-369 (432)
140 PRK09328 N5-glutamine S-adenos 94.7 0.092 2E-06 56.9 8.0 72 406-484 108-183 (275)
141 TIGR02072 BioC biotin biosynth 94.7 0.089 1.9E-06 55.3 7.7 74 407-486 35-108 (240)
142 TIGR03587 Pse_Me-ase pseudamin 94.7 0.12 2.7E-06 53.3 8.4 43 407-450 44-86 (204)
143 PF02390 Methyltransf_4: Putat 94.6 0.19 4.1E-06 51.5 9.5 74 407-484 18-96 (195)
144 COG4267 Predicted membrane pro 94.5 9.9 0.00022 42.2 26.3 107 44-168 65-171 (467)
145 TIGR00755 ksgA dimethyladenosi 94.4 0.091 2E-06 56.3 7.0 72 389-466 15-88 (253)
146 PRK10909 rsmD 16S rRNA m(2)G96 94.4 0.15 3.2E-06 52.5 8.1 81 395-483 44-128 (199)
147 COG0293 FtsJ 23S rRNA methylas 94.3 0.12 2.6E-06 52.8 7.1 72 406-484 45-119 (205)
148 PTZ00098 phosphoethanolamine N 94.2 0.17 3.7E-06 54.6 8.6 82 392-483 41-124 (263)
149 PRK01544 bifunctional N5-gluta 94.1 0.13 2.8E-06 60.7 8.2 71 407-484 139-214 (506)
150 PRK06202 hypothetical protein; 94.1 0.11 2.4E-06 54.8 6.8 76 406-486 60-139 (232)
151 PRK00312 pcm protein-L-isoaspa 94.0 0.19 4.1E-06 52.3 8.3 82 393-485 68-153 (212)
152 TIGR03438 probable methyltrans 94.0 0.19 4E-06 55.4 8.6 63 406-468 63-130 (301)
153 PF05958 tRNA_U5-meth_tr: tRNA 94.0 0.073 1.6E-06 59.9 5.4 69 390-465 184-256 (352)
154 PLN02336 phosphoethanolamine N 93.9 0.17 3.8E-06 59.5 8.6 82 392-483 255-339 (475)
155 COG4122 Predicted O-methyltran 93.9 0.3 6.5E-06 50.7 9.2 80 407-488 60-144 (219)
156 COG2263 Predicted RNA methylas 93.8 0.16 3.5E-06 50.8 6.7 68 406-483 45-115 (198)
157 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.7 0.32 6.9E-06 53.0 9.6 82 405-489 84-169 (283)
158 PF01170 UPF0020: Putative RNA 93.6 0.21 4.7E-06 50.4 7.5 74 406-484 28-114 (179)
159 PRK11207 tellurite resistance 93.5 0.21 4.5E-06 51.4 7.3 65 393-463 20-88 (197)
160 PRK14967 putative methyltransf 93.4 0.22 4.8E-06 52.2 7.6 72 406-485 36-110 (223)
161 PHA03412 putative methyltransf 93.4 0.16 3.4E-06 53.2 6.2 56 407-463 50-107 (241)
162 PLN02589 caffeoyl-CoA O-methyl 93.4 0.41 8.8E-06 50.9 9.4 77 407-483 80-163 (247)
163 COG4106 Tam Trans-aconitate me 93.3 0.2 4.2E-06 51.0 6.4 56 391-450 18-73 (257)
164 PF08241 Methyltransf_11: Meth 93.3 0.33 7.2E-06 42.5 7.5 67 411-484 1-68 (95)
165 PRK11088 rrmA 23S rRNA methylt 93.1 0.24 5.1E-06 53.7 7.4 58 407-465 86-145 (272)
166 COG2230 Cfa Cyclopropane fatty 93.0 0.28 6.2E-06 52.7 7.6 68 392-464 61-133 (283)
167 TIGR02716 C20_methyl_CrtF C-20 93.0 0.35 7.5E-06 53.4 8.7 56 406-463 149-209 (306)
168 TIGR02081 metW methionine bios 93.0 0.2 4.3E-06 51.3 6.3 80 392-484 4-83 (194)
169 PRK05031 tRNA (uracil-5-)-meth 93.0 0.43 9.3E-06 54.0 9.5 55 408-465 208-266 (362)
170 PLN02396 hexaprenyldihydroxybe 92.7 0.3 6.4E-06 54.2 7.6 57 406-465 131-192 (322)
171 COG4262 Predicted spermidine s 92.7 11 0.00025 41.5 18.9 64 417-484 297-373 (508)
172 PRK00811 spermidine synthase; 92.6 0.31 6.7E-06 53.2 7.5 73 407-484 77-158 (283)
173 COG2890 HemK Methylase of poly 92.6 0.2 4.4E-06 54.4 6.0 66 409-483 113-183 (280)
174 PRK15001 SAM-dependent 23S rib 92.5 0.41 8.9E-06 54.1 8.5 70 407-483 229-305 (378)
175 TIGR00095 RNA methyltransferas 92.4 0.53 1.1E-05 48.1 8.3 56 406-463 49-109 (189)
176 PRK11705 cyclopropane fatty ac 92.3 0.43 9.4E-06 54.3 8.4 65 393-462 157-222 (383)
177 PLN02490 MPBQ/MSBQ methyltrans 92.2 0.5 1.1E-05 52.7 8.5 59 406-465 113-172 (340)
178 KOG3420|consensus 92.0 0.2 4.3E-06 47.6 4.3 55 406-462 48-105 (185)
179 PRK15128 23S rRNA m(5)C1962 me 91.8 0.72 1.6E-05 52.7 9.5 74 407-483 221-300 (396)
180 PF03848 TehB: Tellurite resis 91.7 0.56 1.2E-05 47.8 7.5 52 392-449 19-70 (192)
181 PLN02585 magnesium protoporphy 91.5 0.43 9.2E-06 52.8 6.9 42 406-450 144-185 (315)
182 TIGR00478 tly hemolysin TlyA f 91.4 0.64 1.4E-05 48.8 7.8 89 392-490 63-152 (228)
183 PLN02366 spermidine synthase 91.3 0.9 2E-05 50.0 9.2 74 407-484 92-173 (308)
184 PRK10258 biotin biosynthesis p 91.3 0.62 1.3E-05 49.7 7.8 82 390-483 29-110 (251)
185 PF03602 Cons_hypoth95: Conser 91.2 0.74 1.6E-05 46.7 7.9 88 391-483 28-121 (183)
186 PRK07580 Mg-protoporphyrin IX 91.1 0.68 1.5E-05 48.5 7.9 67 406-483 63-134 (230)
187 PRK09489 rsmC 16S ribosomal RN 90.9 0.72 1.6E-05 51.6 8.1 43 407-450 197-239 (342)
188 PRK15068 tRNA mo(5)U34 methylt 90.8 0.63 1.4E-05 51.7 7.5 69 406-482 122-195 (322)
189 TIGR02143 trmA_only tRNA (urac 90.6 1.1 2.5E-05 50.4 9.4 66 393-465 188-257 (353)
190 TIGR00477 tehB tellurite resis 90.6 0.46 1E-05 48.7 5.8 53 392-450 19-71 (195)
191 COG2520 Predicted methyltransf 90.5 0.58 1.2E-05 51.9 6.8 86 406-498 188-278 (341)
192 KOG2904|consensus 90.2 0.71 1.5E-05 48.8 6.6 55 407-462 149-208 (328)
193 PRK01581 speE spermidine synth 90.1 0.87 1.9E-05 50.8 7.7 72 408-484 152-234 (374)
194 TIGR02987 met_A_Alw26 type II 90.0 1.9 4.2E-05 51.4 11.3 44 407-450 32-82 (524)
195 COG2521 Predicted archaeal met 90.0 0.4 8.7E-06 49.3 4.5 73 405-482 133-211 (287)
196 PLN02336 phosphoethanolamine N 90.0 0.55 1.2E-05 55.2 6.6 85 392-485 26-112 (475)
197 COG2264 PrmA Ribosomal protein 89.6 0.58 1.3E-05 50.8 5.8 74 406-484 162-237 (300)
198 PF03291 Pox_MCEL: mRNA cappin 89.4 0.55 1.2E-05 52.3 5.6 44 406-451 62-105 (331)
199 TIGR00486 YbgI_SA1388 dinuclea 89.4 0.82 1.8E-05 48.8 6.7 79 804-883 1-100 (249)
200 PRK13255 thiopurine S-methyltr 89.4 1.2 2.5E-05 46.7 7.7 39 406-447 37-75 (218)
201 PRK12335 tellurite resistance 89.3 0.9 2E-05 49.6 7.1 41 407-450 121-161 (287)
202 COG2518 Pcm Protein-L-isoaspar 89.2 1.8 3.9E-05 44.5 8.6 98 388-497 57-165 (209)
203 PF13578 Methyltransf_24: Meth 89.0 0.46 9.9E-06 43.3 3.9 66 417-485 7-78 (106)
204 PF06325 PrmA: Ribosomal prote 88.9 0.78 1.7E-05 50.1 6.2 69 406-485 161-234 (295)
205 PF08242 Methyltransf_12: Meth 88.7 0.15 3.3E-06 45.7 0.5 39 411-450 1-39 (99)
206 PRK11783 rlmL 23S rRNA m(2)G24 88.6 1.1 2.3E-05 55.5 7.8 71 407-483 539-615 (702)
207 PRK11727 23S rRNA mA1618 methy 88.5 1.7 3.7E-05 48.0 8.5 76 406-483 114-196 (321)
208 TIGR03840 TMPT_Se_Te thiopurin 88.3 0.9 1.9E-05 47.3 5.9 39 406-447 34-72 (213)
209 COG0742 N6-adenine-specific me 88.2 2.6 5.7E-05 42.5 8.8 87 391-483 29-121 (187)
210 KOG3191|consensus 87.8 2.5 5.4E-05 42.2 8.1 72 407-484 44-118 (209)
211 smart00828 PKS_MT Methyltransf 87.8 1.3 2.9E-05 46.2 7.0 41 409-450 2-42 (224)
212 TIGR00452 methyltransferase, p 87.8 1.8 3.8E-05 47.9 8.1 77 395-482 113-194 (314)
213 COG0220 Predicted S-adenosylme 87.4 1.9 4.1E-05 45.3 7.7 74 408-484 50-127 (227)
214 PF04506 Rft-1: Rft protein; 87.2 3.9 8.5E-05 48.8 11.1 147 4-156 256-413 (549)
215 TIGR00417 speE spermidine synt 86.5 2.2 4.8E-05 46.1 8.0 72 408-484 74-153 (270)
216 KOG0820|consensus 86.2 2.7 5.9E-05 44.5 7.9 80 392-484 47-131 (315)
217 PRK10799 metal-binding protein 85.9 3.3 7.2E-05 44.1 8.8 77 805-883 2-99 (247)
218 PF02254 TrkA_N: TrkA-N domain 85.7 2 4.4E-05 39.6 6.3 67 415-485 4-71 (116)
219 PRK01544 bifunctional N5-gluta 85.4 2.2 4.9E-05 50.4 7.8 75 406-484 347-425 (506)
220 PF01564 Spermine_synth: Sperm 85.3 3.4 7.3E-05 44.1 8.4 73 407-484 78-158 (246)
221 PF01784 NIF3: NIF3 (NGG1p int 84.5 2.1 4.5E-05 45.5 6.4 61 822-883 23-97 (241)
222 TIGR01444 fkbM_fam methyltrans 84.3 1.5 3.2E-05 42.1 4.8 41 409-450 1-41 (143)
223 PF00398 RrnaAD: Ribosomal RNA 84.2 2.3 4.9E-05 45.8 6.6 72 390-467 17-90 (262)
224 PRK04148 hypothetical protein; 84.0 2.9 6.3E-05 39.9 6.4 42 407-450 17-58 (134)
225 PF03059 NAS: Nicotianamine sy 83.6 1.8 3.8E-05 46.7 5.4 69 414-487 126-203 (276)
226 KOG4589|consensus 83.5 3.5 7.6E-05 41.2 6.8 86 387-484 55-144 (232)
227 PRK05134 bifunctional 3-demeth 83.2 4.2 9.1E-05 42.7 8.1 72 406-484 48-122 (233)
228 PLN02823 spermine synthase 82.9 3.6 7.8E-05 45.9 7.7 71 409-484 106-184 (336)
229 PLN02672 methionine S-methyltr 82.8 1.9 4.1E-05 55.0 6.0 80 407-495 119-218 (1082)
230 TIGR03439 methyl_EasF probable 81.7 5.4 0.00012 44.1 8.4 89 406-495 76-174 (319)
231 PF01943 Polysacc_synt: Polysa 80.8 77 0.0017 33.2 20.9 65 210-274 3-68 (273)
232 PRK04338 N(2),N(2)-dimethylgua 79.6 4.1 9E-05 46.3 6.8 57 407-464 58-118 (382)
233 KOG1540|consensus 79.5 7.1 0.00015 41.2 7.7 88 391-486 88-187 (296)
234 COG2227 UbiG 2-polyprenyl-3-me 79.4 4.8 0.0001 42.1 6.6 42 406-450 59-100 (243)
235 COG0030 KsgA Dimethyladenosine 79.2 4.6 9.9E-05 43.1 6.5 85 390-484 17-103 (259)
236 KOG1540|consensus 79.2 2.4 5.1E-05 44.6 4.2 42 600-641 192-233 (296)
237 TIGR00308 TRM1 tRNA(guanine-26 79.1 6 0.00013 44.9 7.8 73 407-483 45-121 (374)
238 PRK13256 thiopurine S-methyltr 79.0 5.5 0.00012 41.8 7.0 41 406-449 43-83 (226)
239 PF00891 Methyltransf_2: O-met 77.7 4.5 9.8E-05 42.8 6.1 52 407-462 101-152 (241)
240 KOG2864|consensus 77.4 17 0.00036 41.6 10.4 79 74-156 315-393 (530)
241 PF12836 HHH_3: Helix-hairpin- 77.1 0.72 1.6E-05 38.1 -0.1 41 522-568 8-49 (65)
242 PF13679 Methyltransf_32: Meth 75.1 5.5 0.00012 38.4 5.4 45 406-450 25-72 (141)
243 PF06962 rRNA_methylase: Putat 74.7 3.6 7.8E-05 39.6 3.8 38 602-639 72-114 (140)
244 smart00138 MeTrc Methyltransfe 72.5 6.8 0.00015 42.2 5.8 44 407-450 100-151 (264)
245 PF02384 N6_Mtase: N-6 DNA Met 72.2 5.2 0.00011 44.1 5.1 44 406-449 46-95 (311)
246 PF08123 DOT1: Histone methyla 71.9 19 0.00041 37.2 8.6 83 393-484 32-130 (205)
247 PF05724 TPMT: Thiopurine S-me 71.8 10 0.00022 39.6 6.8 69 406-481 37-121 (218)
248 COG2226 UbiE Methylase involve 71.7 3.9 8.4E-05 43.2 3.6 40 600-639 134-173 (238)
249 COG0421 SpeE Spermidine syntha 71.2 19 0.0004 39.2 8.8 72 408-484 78-157 (282)
250 COG2813 RsmC 16S RNA G1207 met 71.1 9.9 0.00021 41.3 6.5 51 396-450 151-201 (300)
251 PRK11783 rlmL 23S rRNA m(2)G24 70.5 8.7 0.00019 47.5 6.9 49 432-483 257-310 (702)
252 KOG2360|consensus 70.0 3.1 6.7E-05 46.2 2.5 92 406-513 213-308 (413)
253 PRK00536 speE spermidine synth 69.5 11 0.00023 40.5 6.4 67 406-484 73-147 (262)
254 PRK11524 putative methyltransf 69.4 6.7 0.00014 42.8 5.0 53 391-450 197-249 (284)
255 PF13440 Polysacc_synt_3: Poly 68.4 20 0.00043 37.4 8.4 67 2-70 184-250 (251)
256 PF07021 MetW: Methionine bios 68.4 22 0.00049 36.1 8.0 51 406-461 13-63 (193)
257 PF11599 AviRa: RRNA methyltra 68.2 7.5 0.00016 39.9 4.5 56 390-449 38-95 (246)
258 PF05401 NodS: Nodulation prot 68.0 12 0.00027 38.0 6.1 55 407-464 44-100 (201)
259 TIGR01983 UbiG ubiquinone bios 66.7 13 0.00029 38.5 6.5 70 407-483 46-119 (224)
260 PF10672 Methyltrans_SAM: S-ad 66.4 29 0.00062 37.8 9.0 73 406-483 123-202 (286)
261 PF04989 CmcI: Cephalosporin h 66.4 23 0.0005 36.4 7.8 69 393-467 25-99 (206)
262 PF08003 Methyltransf_9: Prote 66.1 13 0.00028 40.5 6.2 60 406-467 115-179 (315)
263 PRK11760 putative 23S rRNA C24 65.2 19 0.0004 40.1 7.2 55 405-465 210-265 (357)
264 COG0327 Uncharacterized conser 63.2 40 0.00088 36.0 9.3 74 806-879 3-98 (250)
265 KOG2187|consensus 62.7 9.1 0.0002 44.3 4.5 53 406-461 383-439 (534)
266 TIGR03128 RuMP_HxlA 3-hexulose 62.4 1.5E+02 0.0032 30.4 13.2 121 704-861 67-188 (206)
267 PF13489 Methyltransf_23: Meth 62.0 21 0.00046 34.4 6.6 51 392-446 9-59 (161)
268 COG3333 Uncharacterized protei 62.0 3E+02 0.0065 31.8 20.1 36 78-113 104-139 (504)
269 COG1092 Predicted SAM-dependen 61.3 27 0.00059 39.7 7.9 73 407-483 218-297 (393)
270 PF14667 Polysacc_synt_C: Poly 59.7 1.6E+02 0.0034 27.8 15.1 36 131-166 2-37 (146)
271 PLN02232 ubiquinone biosynthes 59.4 7.7 0.00017 38.3 2.9 39 600-639 59-97 (160)
272 TIGR00426 competence protein C 58.9 6.1 0.00013 33.0 1.7 42 522-568 10-52 (69)
273 COG1555 ComEA DNA uptake prote 58.8 7.6 0.00016 37.9 2.6 41 522-568 91-132 (149)
274 KOG2899|consensus 57.5 17 0.00037 38.1 5.0 56 392-449 45-100 (288)
275 PF01555 N6_N4_Mtase: DNA meth 57.1 16 0.00035 37.7 5.0 52 391-449 180-231 (231)
276 COG0116 Predicted N6-adenine-s 57.1 15 0.00032 41.3 4.9 46 433-483 256-306 (381)
277 PRK00124 hypothetical protein; 56.8 31 0.00067 33.7 6.4 80 802-884 8-98 (151)
278 PF02579 Nitro_FeMo-Co: Dinitr 56.6 22 0.00047 31.2 5.1 40 840-879 41-80 (94)
279 COG1041 Predicted DNA modifica 55.4 14 0.0003 41.1 4.2 71 405-483 196-271 (347)
280 COG3963 Phospholipid N-methylt 55.3 51 0.0011 32.7 7.5 76 406-482 48-123 (194)
281 KOG1499|consensus 55.1 21 0.00045 39.5 5.4 69 406-482 60-133 (346)
282 cd00851 MTH1175 This uncharact 53.8 29 0.00063 31.0 5.5 43 839-881 50-92 (103)
283 PF08241 Methyltransf_11: Meth 53.6 6.5 0.00014 34.1 1.1 22 599-620 74-95 (95)
284 COG4798 Predicted methyltransf 52.4 13 0.00029 37.5 3.1 46 393-441 38-83 (238)
285 KOG1500|consensus 51.6 30 0.00065 37.8 5.8 67 406-481 177-248 (517)
286 COG1064 AdhP Zn-dependent alco 51.3 27 0.00058 38.9 5.7 68 408-483 169-236 (339)
287 PF04672 Methyltransf_19: S-ad 49.9 38 0.00083 36.3 6.3 83 387-471 51-139 (267)
288 KOG3010|consensus 49.6 20 0.00043 37.6 4.0 40 408-450 35-74 (261)
289 COG1500 Predicted exosome subu 49.1 24 0.00051 36.5 4.4 82 503-590 26-129 (234)
290 PF06859 Bin3: Bicoid-interact 49.0 18 0.00038 33.2 3.1 30 592-621 14-43 (110)
291 PF02702 KdpD: Osmosensitive K 48.1 70 0.0015 32.9 7.5 99 706-815 76-174 (211)
292 TIGR00438 rrmJ cell division p 47.3 22 0.00047 36.0 4.0 26 599-624 123-148 (188)
293 COG1189 Predicted rRNA methyla 47.1 53 0.0011 34.6 6.6 85 393-485 68-153 (245)
294 PRK08091 ribulose-phosphate 3- 46.9 1.2E+02 0.0025 32.0 9.3 122 704-860 82-208 (228)
295 cd04726 KGPDC_HPS 3-Keto-L-gul 46.4 2.2E+02 0.0047 28.8 11.4 120 704-861 68-188 (202)
296 TIGR00262 trpA tryptophan synt 46.3 2.2E+02 0.0048 30.5 11.6 119 704-862 106-230 (256)
297 PF05185 PRMT5: PRMT5 arginine 45.9 40 0.00087 39.3 6.3 69 407-481 187-263 (448)
298 COG1671 Uncharacterized protei 45.7 63 0.0014 31.4 6.4 74 802-878 9-90 (150)
299 COG4956 Integral membrane prot 45.7 4.4E+02 0.0096 28.9 15.4 60 250-313 5-64 (356)
300 PF12847 Methyltransf_18: Meth 45.6 17 0.00036 32.9 2.6 23 599-621 88-110 (112)
301 cd00945 Aldolase_Class_I Class 45.1 56 0.0012 32.8 6.7 58 700-759 65-125 (201)
302 cd00562 NifX_NifB This CD repr 44.5 43 0.00093 29.8 5.1 43 839-881 48-90 (102)
303 TIGR03704 PrmC_rel_meth putati 44.3 38 0.00081 36.2 5.4 42 595-637 189-230 (251)
304 cd00315 Cyt_C5_DNA_methylase C 43.3 53 0.0012 35.6 6.4 71 409-486 2-72 (275)
305 KOG1541|consensus 43.1 31 0.00067 35.7 4.1 58 388-449 33-90 (270)
306 PRK00377 cbiT cobalt-precorrin 42.3 14 0.00031 37.7 1.8 37 599-636 122-159 (198)
307 COG1433 Uncharacterized conser 41.8 50 0.0011 31.0 5.1 44 838-881 51-94 (121)
308 PF12692 Methyltransf_17: S-ad 41.5 72 0.0016 31.0 6.0 75 407-486 29-103 (160)
309 PF02153 PDH: Prephenate dehyd 41.3 50 0.0011 35.3 5.8 61 425-485 5-79 (258)
310 PRK11207 tellurite resistance 40.8 26 0.00056 35.9 3.3 30 599-628 111-140 (197)
311 PRK13798 putative OHCU decarbo 40.3 60 0.0013 32.3 5.7 55 506-573 2-56 (166)
312 PRK11188 rrmJ 23S rRNA methylt 40.1 47 0.001 34.4 5.2 26 601-626 144-169 (209)
313 PLN02233 ubiquinone biosynthes 39.5 24 0.00053 37.9 3.0 30 599-628 159-188 (261)
314 PF09587 PGA_cap: Bacterial ca 39.4 24 0.00051 37.6 2.9 24 705-728 208-231 (250)
315 COG0269 SgbH 3-hexulose-6-phos 38.7 1.5E+02 0.0033 30.7 8.3 75 736-861 119-194 (217)
316 PF07279 DUF1442: Protein of u 38.0 1.5E+02 0.0032 30.8 8.1 90 388-485 25-124 (218)
317 PRK13699 putative methylase; P 37.7 51 0.0011 34.6 5.0 42 406-450 163-204 (227)
318 TIGR02469 CbiT precorrin-6Y C5 36.8 34 0.00074 31.3 3.3 25 599-624 99-123 (124)
319 PRK10669 putative cation:proto 36.4 67 0.0015 38.7 6.5 67 415-485 423-490 (558)
320 COG2242 CobL Precorrin-6B meth 35.9 11 0.00023 38.1 -0.4 34 591-625 105-140 (187)
321 PRK14904 16S rRNA methyltransf 35.8 48 0.001 38.7 4.9 36 603-638 358-396 (445)
322 cd07395 MPP_CSTP1 Homo sapiens 35.6 74 0.0016 33.9 6.1 56 705-760 156-220 (262)
323 TIGR00477 tehB tellurite resis 35.6 35 0.00076 34.8 3.4 28 599-626 110-137 (195)
324 PRK05717 oxidoreductase; Valid 35.3 1.7E+02 0.0036 30.8 8.7 79 407-488 10-96 (255)
325 PRK04148 hypothetical protein; 34.7 2E+02 0.0043 27.6 8.0 65 807-881 2-67 (134)
326 PRK14057 epimerase; Provisiona 34.6 4.2E+02 0.0092 28.3 11.2 29 832-860 194-222 (254)
327 KOG1709|consensus 34.4 1.1E+02 0.0024 31.7 6.4 74 406-484 101-177 (271)
328 PRK06940 short chain dehydroge 34.0 1E+02 0.0022 33.1 6.8 72 416-487 9-87 (275)
329 PRK09328 N5-glutamine S-adenos 33.9 64 0.0014 34.6 5.3 42 595-637 211-252 (275)
330 PF08242 Methyltransf_12: Meth 33.8 23 0.0005 31.3 1.5 20 599-618 80-99 (99)
331 PRK03612 spermidine synthase; 33.6 8.9E+02 0.019 28.9 20.4 29 6-34 15-43 (521)
332 PF07287 DUF1446: Protein of u 33.6 1.3E+02 0.0028 34.0 7.5 104 736-863 60-171 (362)
333 PF02353 CMAS: Mycolic acid cy 33.4 37 0.0008 36.8 3.2 34 599-632 143-176 (273)
334 PRK08263 short chain dehydroge 33.0 1.4E+02 0.0029 32.0 7.6 73 416-488 11-89 (275)
335 PF13653 GDPD_2: Glycerophosph 32.9 40 0.00086 23.4 2.1 20 703-722 10-29 (30)
336 TIGR01286 nifK nitrogenase mol 31.1 5.5E+02 0.012 30.6 12.7 53 598-655 127-185 (515)
337 PRK14967 putative methyltransf 30.7 79 0.0017 32.9 5.1 23 599-621 136-158 (223)
338 KOG3339|consensus 30.6 2.2E+02 0.0047 28.8 7.5 36 413-449 43-85 (211)
339 TIGR03249 KdgD 5-dehydro-4-deo 30.5 1.8E+02 0.0039 31.8 8.1 49 703-754 89-137 (296)
340 TIGR02752 MenG_heptapren 2-hep 30.2 40 0.00087 35.1 2.8 37 600-636 129-165 (231)
341 TIGR01259 comE comEA protein. 30.2 34 0.00074 32.0 2.0 40 522-567 62-102 (120)
342 PF00107 ADH_zinc_N: Zinc-bind 30.1 96 0.0021 28.7 5.2 31 418-450 3-33 (130)
343 TIGR03151 enACPred_II putative 29.6 4.3E+02 0.0093 29.1 10.8 92 703-825 77-168 (307)
344 cd04729 NanE N-acetylmannosami 29.4 6.4E+02 0.014 25.9 13.0 127 700-861 79-208 (219)
345 PRK09496 trkA potassium transp 29.4 1.2E+02 0.0026 35.2 6.9 66 415-482 237-303 (453)
346 PRK06500 short chain dehydroge 29.2 1.4E+02 0.0031 31.0 6.9 75 413-487 11-91 (249)
347 PRK11933 yebU rRNA (cytosine-C 28.6 47 0.001 38.9 3.2 58 579-638 200-261 (470)
348 KOG1975|consensus 28.5 48 0.001 36.3 3.0 44 406-451 117-160 (389)
349 PF14164 YqzH: YqzH-like prote 28.3 1.4E+02 0.003 24.6 4.9 44 527-573 7-58 (64)
350 PLN02417 dihydrodipicolinate s 28.3 3.2E+02 0.007 29.6 9.5 64 703-773 86-149 (280)
351 COG0569 TrkA K+ transport syst 28.0 1.6E+02 0.0034 30.9 6.8 69 415-486 6-76 (225)
352 COG4858 Uncharacterized membra 27.9 4.2E+02 0.0091 26.8 8.9 18 201-218 37-54 (226)
353 PRK11070 ssDNA exonuclease Rec 27.7 92 0.002 37.6 5.5 15 844-858 143-157 (575)
354 cd00852 NifB NifB belongs to a 27.7 1.5E+02 0.0033 26.7 5.8 31 851-881 64-94 (106)
355 PRK10538 malonic semialdehyde 27.2 1.6E+02 0.0034 30.9 6.8 75 414-488 6-86 (248)
356 PRK09140 2-dehydro-3-deoxy-6-p 27.2 89 0.0019 32.3 4.6 44 842-885 73-116 (206)
357 PRK07402 precorrin-6B methylas 27.0 93 0.002 31.5 4.8 37 600-637 120-157 (196)
358 PRK04266 fibrillarin; Provisio 26.9 85 0.0018 32.9 4.5 19 602-620 156-174 (226)
359 KOG1271|consensus 26.7 72 0.0016 32.2 3.6 43 407-450 68-110 (227)
360 TIGR00563 rsmB ribosomal RNA s 26.6 84 0.0018 36.4 4.9 37 602-638 348-387 (426)
361 PF11055 Gsf2: Glucose signall 26.5 1.9E+02 0.004 32.2 6.9 81 481-572 272-361 (377)
362 KOG1271|consensus 26.5 93 0.002 31.4 4.3 33 605-637 164-196 (227)
363 PF06570 DUF1129: Protein of u 26.5 3.4E+02 0.0075 27.9 8.9 17 370-386 181-197 (206)
364 PLN02232 ubiquinone biosynthes 26.4 64 0.0014 31.7 3.3 57 435-498 1-64 (160)
365 PRK09489 rsmC 16S ribosomal RN 26.4 81 0.0017 35.4 4.5 41 597-637 278-319 (342)
366 PF07091 FmrO: Ribosomal RNA m 26.3 1.5E+02 0.0033 31.5 6.1 59 389-449 89-147 (251)
367 PF13470 PIN_3: PIN domain 26.0 57 0.0012 29.9 2.8 19 844-862 101-119 (119)
368 cd07381 MPP_CapA CapA and rela 25.9 51 0.0011 34.7 2.7 24 705-728 199-222 (239)
369 smart00854 PGA_cap Bacterial c 25.9 53 0.0011 34.7 2.8 25 704-728 196-220 (239)
370 PRK07424 bifunctional sterol d 25.7 2.5E+02 0.0055 32.3 8.4 74 413-488 183-257 (406)
371 PF10923 DUF2791: P-loop Domai 25.6 3.7E+02 0.0079 31.1 9.5 106 423-536 231-344 (416)
372 PRK10537 voltage-gated potassi 25.6 5E+02 0.011 29.8 10.7 64 415-484 246-310 (393)
373 COG4123 Predicted O-methyltran 25.5 58 0.0013 34.6 2.9 37 592-628 140-177 (248)
374 PRK11036 putative S-adenosyl-L 25.5 76 0.0017 33.8 4.0 34 601-635 128-161 (255)
375 PRK07666 fabG 3-ketoacyl-(acyl 25.4 2E+02 0.0044 29.7 7.2 75 414-488 13-96 (239)
376 TIGR03325 BphB_TodD cis-2,3-di 25.3 2.1E+02 0.0045 30.2 7.4 74 414-487 11-90 (262)
377 KOG1270|consensus 25.3 91 0.002 33.3 4.2 40 407-449 90-129 (282)
378 PLN03209 translocon at the inn 25.2 2.2E+02 0.0048 34.2 7.9 72 414-487 86-170 (576)
379 cd00842 MPP_ASMase acid sphing 25.1 1.2E+02 0.0026 33.0 5.6 56 705-761 205-264 (296)
380 TIGR00740 methyltransferase, p 25.1 90 0.0019 32.8 4.4 34 600-633 139-172 (239)
381 TIGR00783 ccs citrate carrier 25.0 1E+03 0.022 26.8 18.5 58 3-68 47-104 (347)
382 cd00401 AdoHcyase S-adenosyl-L 24.8 1.1E+03 0.024 27.2 15.6 69 694-775 38-109 (413)
383 PRK04457 spermidine synthase; 24.8 75 0.0016 34.2 3.7 23 602-624 157-179 (262)
384 PRK06197 short chain dehydroge 24.8 2.9E+02 0.0064 29.9 8.6 81 407-488 16-107 (306)
385 COG1646 Predicted phosphate-bi 24.8 96 0.0021 32.5 4.2 64 803-866 146-227 (240)
386 TIGR03840 TMPT_Se_Te thiopurin 24.8 74 0.0016 33.0 3.6 25 601-625 131-155 (213)
387 PF00145 DNA_methylase: C-5 cy 24.7 1.1E+02 0.0025 33.4 5.4 65 409-482 2-67 (335)
388 PRK10258 biotin biosynthesis p 24.7 95 0.0021 32.8 4.5 26 600-625 118-143 (251)
389 CHL00200 trpA tryptophan synth 24.6 8.7E+02 0.019 26.1 11.8 119 705-861 111-233 (263)
390 PRK12939 short chain dehydroge 24.6 2.4E+02 0.0052 29.2 7.6 77 413-489 12-97 (250)
391 PTZ00098 phosphoethanolamine N 24.1 75 0.0016 34.1 3.6 25 600-624 134-158 (263)
392 PF14579 HHH_6: Helix-hairpin- 24.0 76 0.0016 27.9 3.0 27 543-569 36-62 (90)
393 PF05977 MFS_3: Transmembrane 23.7 1.3E+03 0.028 27.5 38.7 52 5-56 10-65 (524)
394 TIGR02716 C20_methyl_CrtF C-20 23.6 77 0.0017 34.8 3.7 25 600-624 232-256 (306)
395 PRK06372 translation initiatio 23.6 5.7E+02 0.012 27.4 9.9 36 599-639 72-107 (253)
396 PF12147 Methyltransf_20: Puta 23.3 2.5E+02 0.0054 30.7 7.1 69 391-461 122-196 (311)
397 PF02639 DUF188: Uncharacteriz 23.3 1.6E+02 0.0034 28.1 5.1 71 811-884 3-82 (130)
398 COG4129 Predicted membrane pro 23.3 7.7E+02 0.017 27.5 11.3 35 4-38 50-84 (332)
399 PRK13125 trpA tryptophan synth 23.2 4.5E+02 0.0097 27.8 9.3 25 836-860 188-215 (244)
400 COG1491 Predicted RNA-binding 23.1 81 0.0018 31.6 3.2 27 543-569 139-165 (202)
401 COG4952 Predicted sugar isomer 23.1 1.8E+02 0.0039 31.2 5.9 27 750-776 96-122 (430)
402 PRK06079 enoyl-(acyl carrier p 23.1 3.3E+02 0.0071 28.6 8.3 71 418-488 19-95 (252)
403 KOG1099|consensus 23.1 1.3E+02 0.0028 31.5 4.7 85 387-483 27-122 (294)
404 PF14871 GHL6: Hypothetical gl 23.0 2E+02 0.0043 27.5 5.8 54 704-757 4-67 (132)
405 cd05007 SIS_Etherase N-acetylm 22.9 1.6E+02 0.0036 31.4 5.9 51 561-625 9-59 (257)
406 PRK12335 tellurite resistance 22.9 79 0.0017 34.4 3.5 30 599-628 200-229 (287)
407 TIGR00091 tRNA (guanine-N(7)-) 22.8 1.2E+02 0.0025 30.9 4.6 36 602-637 112-147 (194)
408 PRK07478 short chain dehydroge 22.7 3E+02 0.0066 28.7 8.0 75 413-487 11-94 (254)
409 PF05401 NodS: Nodulation prot 22.3 71 0.0015 32.7 2.7 27 598-624 122-148 (201)
410 PF00107 ADH_zinc_N: Zinc-bind 21.9 56 0.0012 30.3 1.8 23 603-625 70-92 (130)
411 PRK06200 2,3-dihydroxy-2,3-dih 21.9 2.7E+02 0.0059 29.3 7.5 72 416-487 14-91 (263)
412 KOG1122|consensus 21.8 2E+02 0.0044 32.9 6.3 43 405-447 240-282 (460)
413 PRK13760 putative RNA-associat 21.6 1.5E+02 0.0033 31.1 5.1 31 561-591 99-130 (231)
414 PRK08287 cobalt-precorrin-6Y C 21.4 1.4E+02 0.0031 29.9 4.8 21 600-620 109-129 (187)
415 TIGR00536 hemK_fam HemK family 21.3 1.3E+02 0.0028 32.7 4.8 41 595-636 217-257 (284)
416 COG1063 Tdh Threonine dehydrog 21.2 4.8E+02 0.01 29.2 9.5 25 604-628 251-275 (350)
417 PRK10901 16S rRNA methyltransf 21.0 1.3E+02 0.0028 34.9 4.9 38 601-638 351-391 (427)
418 PRK08267 short chain dehydroge 20.9 2.3E+02 0.0049 29.8 6.6 73 416-488 9-89 (260)
419 PRK07024 short chain dehydroge 20.9 3.4E+02 0.0073 28.5 7.9 75 414-488 8-90 (257)
420 PRK10711 hypothetical protein; 20.8 1E+03 0.022 25.2 11.4 87 3-114 84-170 (231)
421 PF04172 LrgB: LrgB-like famil 20.6 9.7E+02 0.021 24.9 11.3 87 3-114 73-159 (215)
422 PF13489 Methyltransf_23: Meth 20.6 77 0.0017 30.4 2.6 24 601-624 94-117 (161)
423 KOG2361|consensus 20.4 1.4E+02 0.0031 31.5 4.4 55 393-449 59-115 (264)
424 PF10354 DUF2431: Domain of un 20.3 1.3E+02 0.0029 29.8 4.3 36 588-625 93-128 (166)
425 PF03904 DUF334: Domain of unk 20.3 4.9E+02 0.011 27.2 8.2 30 77-106 143-172 (230)
426 PRK05866 short chain dehydroge 20.3 2.6E+02 0.0057 30.3 7.0 75 413-487 45-128 (293)
427 PRK08265 short chain dehydroge 20.2 2.5E+02 0.0054 29.6 6.7 75 413-487 11-91 (261)
428 TIGR01364 serC_1 phosphoserine 20.1 1.9E+02 0.004 32.5 5.9 48 832-880 56-109 (349)
No 1
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.9e-99 Score=778.07 Aligned_cols=274 Identities=47% Similarity=0.748 Sum_probs=260.5
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELD 466 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~ 466 (896)
.+++|+++.|.++| +++|||||||.||||++||+++++.++++|+|+||+|++.|+++ +++|++++|+||+++.
T Consensus 10 VLl~E~i~~L~~~~---~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 10 VLLNEVVELLAPKP---DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA 86 (314)
T ss_pred hHHHHHHHhcccCC---CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence 47899999999974 89999999999999999999999999999999999999999885 4789999999999999
Q ss_pred HHHHhcCCCcccEEEEecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHHH
Q psy2376 467 IILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKI 546 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~~ 546 (896)
.++++.++++|||||+||||||||||++||||||++||||||||||++++||+||||+|+|+||++||++|||||+||||
T Consensus 87 ~~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~arrI 166 (314)
T COG0275 87 EALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRI 166 (314)
T ss_pred HHHHhcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHhhccCCC--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEEEEeec
Q psy2376 547 AKEIVHYRSITPITRTKQLVEIILKSIRGNK--RYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 547 a~~i~~~r~~~~~~~t~~l~~~~~~~~~~~~--~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
|++||++|+++||+||.||+|+|++++|... +++||||||||||||+|||||++|+++|++|.++|+||||++|||||
T Consensus 167 A~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 167 ARAIVERRKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHhccCCCccHHHHHHHHHHhCCchhcccCCCcchhhhhhheeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEec
Confidence 9999999999999999999999999999654 34699999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCCccccCCcccchhhccccc
Q psy2376 625 SLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARCKP 667 (896)
Q Consensus 625 sledr~vk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 667 (896)
||||||||+||+++++ |.+|+++|+++++..++++.+|++-+
T Consensus 247 SLEDRiVK~ff~~~s~-~~~p~~lP~~~~~~~~~~~~itkK~i 288 (314)
T COG0275 247 SLEDRIVKNFFKELSK-PGVPKGLPVTEEGPALKFKLITKKPI 288 (314)
T ss_pred chHHHHHHHHHHHhcc-cCCCCCCCcccccccchhhhccCCCc
Confidence 9999999999999998 89999999999984444788876643
No 2
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=100.00 E-value=1.2e-93 Score=758.99 Aligned_cols=274 Identities=47% Similarity=0.728 Sum_probs=218.3
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELD 466 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~ 466 (896)
.|++|+++.|.++ |+++|||||||.||||.+||+++++ ++|+|+|+||+|++.|+++ +.+|++++|+||+++.
T Consensus 7 Vll~Evl~~L~~~---~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 7 VLLKEVLEALNPK---PGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD 82 (310)
T ss_dssp TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH
T ss_pred ccHHHHHHhhCcC---CCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH
Confidence 5899999999986 4999999999999999999999976 9999999999999999765 4689999999999999
Q ss_pred HHHHhc-CCCcccEEEEecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHH
Q psy2376 467 IILKKY-NIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKK 545 (896)
Q Consensus 467 ~~l~~~-~~~~~d~il~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~ 545 (896)
+++++. ++.++||||+||||||||+|+++|||||++|||||||||++++.||+|+||+|||++|++||++||||++|++
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~I~~~yGee~~a~~ 162 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELARIFREYGEEKFARR 162 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHHHHHHHH--TTHHH
T ss_pred HHHHHccCCCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHHHHHhcCchhHHHH
Confidence 999999 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHhhccCCC--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEEEEee
Q psy2376 546 IAKEIVHYRSITPITRTKQLVEIILKSIRGNK--RYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISF 623 (896)
Q Consensus 546 ~a~~i~~~r~~~~~~~t~~l~~~~~~~~~~~~--~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~visf 623 (896)
||++||++|+++||+||.||+++|++++|... +++||||||||||||+|||||++|+++|++++++|+||||++||||
T Consensus 163 IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~a~~~L~~gGrl~VISF 242 (310)
T PF01795_consen 163 IARAIVEARKKKPITTTKELAEIIEKAVPKKRRRRKIHPATRVFQALRIAVNDELEELERGLEAAPDLLKPGGRLVVISF 242 (310)
T ss_dssp HHHHHHHHHHHSS--BHHHHHHHHHHHS-HHHCC-SS-TTHHHHHHHHHHHCTHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCcccccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 99999999999999999999999999998543 3579999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCCccccCCcccchhhccccc
Q psy2376 624 HSLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARCKP 667 (896)
Q Consensus 624 hsledr~vk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 667 (896)
|||||||||++|+++++.|.||+++|+|.|+..|.++.+|+.-+
T Consensus 243 HSLEDRiVK~~f~~~~~~~~~p~~lp~~~~~~~~~~~~i~kk~i 286 (310)
T PF01795_consen 243 HSLEDRIVKQFFRELAKSCKCPPGLPVCECGKHPKFKLITKKPI 286 (310)
T ss_dssp SHHHHHHHHHHHHCCSSC------------------EESESS-B
T ss_pred cchhhHHHHHHHHHhcccCCCcccccccccccccceEEccCCcc
Confidence 99999999999999999999999999999999999998876543
No 3
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=100.00 E-value=5.4e-91 Score=741.22 Aligned_cols=268 Identities=45% Similarity=0.721 Sum_probs=250.4
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELD 466 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~ 466 (896)
.|++|+++.|.++ |+++|||||||+||||.+||+++++ ++|||||+||+|++.|+++ +.+|++++|+||+++.
T Consensus 7 Vll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 7 VLLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF 82 (305)
T ss_pred hhHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH
Confidence 5899999999986 4899999999999999999999964 9999999999999999875 4569999999999999
Q ss_pred HHHHhcCCCcccEEEEecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHHH
Q psy2376 467 IILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKI 546 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~~ 546 (896)
+++++.++.+||||+|||||||||+|+++|||||++|||||||||++++.||+|+||+|||+||++||++|||||+|++|
T Consensus 83 ~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~~i~~~yGEe~~a~~I 162 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLERILKKYGEEKFSKRI 162 (305)
T ss_pred HHHHhcCCCcccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcchHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHhhccCC--CCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEEEEeec
Q psy2376 547 AKEIVHYRSITPITRTKQLVEIILKSIRGN--KRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 547 a~~i~~~r~~~~~~~t~~l~~~~~~~~~~~--~~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
|++||++|+++||+||.||+++|++++|.. ++++||||||||||||+|||||++|+++|++++++|+||||++|||||
T Consensus 163 A~~Iv~~R~~~~i~tt~~L~~ii~~~~p~~~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 163 ARAIVERRKKKPIQTTKELAELISKAVPGFSKHKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHcCccccccCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999999999999999999999999853 234599999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCCccccCCcccchhhccc
Q psy2376 625 SLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARC 665 (896)
Q Consensus 625 sledr~vk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 665 (896)
||||||||++|+++++. .+|+++|+|.|. .++.+|+.
T Consensus 243 SLEDRiVK~~f~~~~~~-~~~~~~~~~~~~---~~~~lt~k 279 (305)
T TIGR00006 243 SLEDRIVKNFFRELSKF-PQPPGLPVKETP---LYALITKK 279 (305)
T ss_pred cHHHHHHHHHHHHhccc-CCCCCCCccccc---ceeEccCC
Confidence 99999999999998766 468999999874 36666554
No 4
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=100.00 E-value=7.6e-86 Score=702.48 Aligned_cols=262 Identities=47% Similarity=0.763 Sum_probs=243.5
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccC--CCeEEEccChhcHHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITD--SRFSIIHNCFTELDI 467 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 467 (896)
.|++|+++.|.++ |+++|||||||+||||.+||++++++++|||||+||+|++.|+++.. +|++++|++|+++.+
T Consensus 6 Vll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 6 VLLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred ccHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 5899999999986 48999999999999999999999878999999999999999987543 699999999999999
Q ss_pred HHHhcCCCcccEEEEecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHHHH
Q psy2376 468 ILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIA 547 (896)
Q Consensus 468 ~l~~~~~~~~d~il~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~~a 547 (896)
++++ +++++|||+|||||||||+|+++|||||++|||||||||++++.||+|+||+|||++|++||++|||||+|++||
T Consensus 83 ~l~~-~~~~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee~~a~~iA 161 (296)
T PRK00050 83 VLAE-GLGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEERFARRIA 161 (296)
T ss_pred HHHc-CCCccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcchHHHHH
Confidence 9987 777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcchHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEEEEeecchh
Q psy2376 548 KEIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLE 627 (896)
Q Consensus 548 ~~i~~~r~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~visfhsle 627 (896)
++|+++|+++||+||.||+++|++++|..++++||||||||||||+|||||++|+++|++++++|+||||++||||||||
T Consensus 162 ~~Iv~~R~~~~~~tt~~L~~~i~~~~~~~~~~~hpatr~FQAlRI~VN~El~~L~~~L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 162 RAIVEARPKKPITTTGELAEIIKSAVPPRRKGIHPATRTFQALRIEVNDELEELERALEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHcCccCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 99999999999999999999999999843445699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccccCCcccchhhccc
Q psy2376 628 DRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARC 665 (896)
Q Consensus 628 dr~vk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 665 (896)
|||||++|+++++.| |...|.++.+|+.
T Consensus 242 DriVK~~f~~~~~~~----------~~~~~~~~~~~~k 269 (296)
T PRK00050 242 DRIVKRFFRELSKGC----------CGNKPKLKLLTKK 269 (296)
T ss_pred HHHHHHHHHHhcccc----------cccCCceEEcCCC
Confidence 999999999987654 4455666666554
No 5
>KOG2782|consensus
Probab=100.00 E-value=4e-69 Score=520.87 Aligned_cols=246 Identities=35% Similarity=0.529 Sum_probs=231.3
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc----ccCCCeEEEccChhcH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK----ITDSRFSIIHNCFTEL 465 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~----~~~~~~~~~~~~~~~~ 465 (896)
.|++|+++++++-+ ++.|+|||||.||||..||++. ++.++|++|+||-|.+.|+. ++..+++.+.+||+.+
T Consensus 30 Vm~devl~~lspv~---g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~ 105 (303)
T KOG2782|consen 30 VMLDEVLDILSPVR---GRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYI 105 (303)
T ss_pred eehhhHHHHcCCCC---CceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHH
Confidence 49999999999964 9999999999999999999998 57899999999999998863 4678888999999999
Q ss_pred HHHHHhcCCC--cccEEEEecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccH
Q psy2376 466 DIILKKYNIK--KIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFA 543 (896)
Q Consensus 466 ~~~l~~~~~~--~~d~il~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~ 543 (896)
++.+++.|+- .|||||||||+||||+|+|+||||-.+|||||||||+....+|.+++|+++|.||.+|++.||||++|
T Consensus 106 ~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpLDMRMDgg~s~g~~~~~~~~~e~~l~rvlr~ygee~~~ 185 (303)
T KOG2782|consen 106 KSLIADTGLLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPLDMRMDGGASLGAEDIVNSWPESELGRVLRDYGEESNW 185 (303)
T ss_pred HHHHHHhCCCcCCcceEEeecCccccccCCccccceeeccCCcceeecCCCccceeeeecccchhhHHHHHHHhhhhhHH
Confidence 9999998873 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHhhccCCC----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEE
Q psy2376 544 KKIAKEIVHYRSITPITRTKQLVEIILKSIRGNK----RYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIV 619 (896)
Q Consensus 544 ~~~a~~i~~~r~~~~~~~t~~l~~~~~~~~~~~~----~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~ 619 (896)
++|++.||++|-...++||+||+++|+..-|..+ +..|.|||+||++||+|||||++++..+-.+.+.|+||||++
T Consensus 186 ~~l~~~iv~ar~~~~l~st~~l~dli~~~~~~~r~~~~~~~~tatk~fqg~ri~vnnel~~~~~~~~l~~~vl~~~grl~ 265 (303)
T KOG2782|consen 186 YLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQGWIKTATKVFQGLRIAVNNELKTLQNSLYLSFDVLAPGGRLA 265 (303)
T ss_pred HHHHhhhHHhhhccccccchhHHHHhccCCccccccccccccccchhhhhHHHHhhhhhhhccCceeccccccCCCccEE
Confidence 9999999999999999999999999999877543 246999999999999999999999999999999999999999
Q ss_pred EEeecchhHHHHHHHHhhcC
Q psy2376 620 VISFHSLEDRIVKNFINFNT 639 (896)
Q Consensus 620 visfhsledr~vk~~~~~~~ 639 (896)
+|||||||||+|||.|...-
T Consensus 266 ~isfhSLed~vvkr~~~~i~ 285 (303)
T KOG2782|consen 266 VISFHSLEDRVVKRTFLDIL 285 (303)
T ss_pred EEEhhhHHHHHHHHHHhhhh
Confidence 99999999999999998643
No 6
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=100.00 E-value=1.9e-54 Score=457.95 Aligned_cols=223 Identities=33% Similarity=0.470 Sum_probs=202.7
Q ss_pred ccccccccccccccccCCceeeecc-CCCcceEEEEeecCHHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHH
Q psy2376 664 RCKPKKKLNIKKYEDYCPNGLQVEG-RSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQ 742 (896)
Q Consensus 664 ~~~~~~~~~~~~~e~wd~~Gl~~~~-~~~v~~i~~~~~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~ 742 (896)
-..+|+.+|++.+|+|||+|||+|+ +++|++|++|+|+|++++++|+++|||+||||||+||+|.++...+...+++++
T Consensus 7 ~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~ 86 (249)
T TIGR00486 7 IQLINRFLPKELAEDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKI 86 (249)
T ss_pred HHHHHHhCCHHHhcCCCCCeeEecCCCcccCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHH
Confidence 3467999999999999999999995 789999999999999999999999999999999999999988664444444999
Q ss_pred HHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcE
Q psy2376 743 LIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI 822 (896)
Q Consensus 743 l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~ 822 (896)
|+||||+|||+|||||.+++ |+|++||+.|||++.+++.+.+.|.+|+ +++|+|++||++++|++|+++.+
T Consensus 87 li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~g~G~vg~--------l~~~~~~~~~~~~vk~~l~~~~v 157 (249)
T TIGR00486 87 LLQNDISLYSAHTNLDAHDG-GNNDALARALGLENPKEFEDYGLGRVGE--------FKAPIESLEEVLEIKKVLNVKPL 157 (249)
T ss_pred HHHCCCeEEEeecchhcCCC-CHHHHHHHHcCCCccccccCCCceeEEE--------CCCCCCHHHHHHHHHHHhCCCCE
Confidence 99999999999999999987 9999999999999887776555555554 46789999999999999999887
Q ss_pred -EEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCChhhhhhhhhhcccC
Q psy2376 823 -VIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNREL 895 (896)
Q Consensus 823 -~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH~~sE~~~~~~~~~~ 895 (896)
++|+++++|+|||+|+|||++++++|.+.|||+|||||+|||++++|+++|+++||+|||+||++||+.++|.
T Consensus 158 r~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h~~~~A~~~gi~li~~gH~~sE~~~~~~la~~ 231 (249)
T TIGR00486 158 LVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAHLARELGLNVIDAGHYATERGGLRKLMED 231 (249)
T ss_pred EEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCchHHHHHHHHCCCEEEEcCcHHHHHHHHHHHHHH
Confidence 4677788999999999999999999999999999999999999999999999999999999999999988763
No 7
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=100.00 E-value=1.6e-54 Score=457.05 Aligned_cols=224 Identities=28% Similarity=0.435 Sum_probs=194.9
Q ss_pred ccccccccccccccCCceeeecc-CCCcceEEEEeecCHHHHHHHHHcCCCEEEEccCCCccCCCCcc-CChHHHHHHHH
Q psy2376 666 KPKKKLNIKKYEDYCPNGLQVEG-RSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNI-VGIKKKRLEQL 743 (896)
Q Consensus 666 ~~~~~~~~~~~e~wd~~Gl~~~~-~~~v~~i~~~~~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~-~~~~~~~~~~l 743 (896)
.+|+.+|++.+|+|||+|||+|+ +++|++|++|+|+|++|+++|+++||||||||||+||++.++.. .++++++++.+
T Consensus 5 ~le~~~p~~~a~~wDn~Gl~vg~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~l 84 (241)
T PF01784_consen 5 FLEELAPLSLAEDWDNVGLQVGDPEQEVKKVLVALDATPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKL 84 (241)
T ss_dssp HHHHHSTGGGSTTTS-EEEEES-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHH
T ss_pred HHHHhCCHhHcCCCCCCceEECcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHH
Confidence 57899999999999999999996 78999999999999999999999999999999999999998865 46789999999
Q ss_pred HHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccCc---ccccceeecccccccCCccCHHHHHHHHHhHhCCC
Q psy2376 744 IINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNN---IGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKK 820 (896)
Q Consensus 744 ~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~~---~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~ 820 (896)
++|||++|++|||||.+++ |+|++||+.|||++.+++.+.. ...+|++++ +++|+|++||++++|++|+.+
T Consensus 85 i~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~~~~~~~g~g~i~~-----l~~~~s~~el~~~vk~~l~~~ 158 (241)
T PF01784_consen 85 IKNGISVYSAHTNLDAAPG-GVNDYLAKKLGLENIKPLDPSKSGEGYGLGRIGE-----LPEPMSLEELAERVKEKLGLP 158 (241)
T ss_dssp HHTT-EEEEESHHHHHSTT-SHHHHHHHHHTEEEEEEEEEEEEEEEEECEEEEE-----EEEEEEHHHHHHHHHHHTTSS
T ss_pred HHCCCEEEEecccccccCc-CHHHHHHHHhCCCCccccccccccccceeeeEee-----cCCCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999997 9999999999999988887532 123455543 367899999999999999998
Q ss_pred cE-EEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCChhhhhhhhhhcccC
Q psy2376 821 PI-VIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNREL 895 (896)
Q Consensus 821 ~~-~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH~~sE~~~~~~~~~~ 895 (896)
.+ ++|+++++|+|||+|+|||++++++|.+.|||+|||||+|||++++|+++|+++|++|||+||++||+.++|.
T Consensus 159 ~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~gH~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 159 GVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAGHYASERPGMEALAEW 234 (241)
T ss_dssp -EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE--HHHHGGHHHHHHHHH
T ss_pred cEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 88 4678999999999999999999999999999999999999999999999999999999999999999988763
No 8
>PRK10799 metal-binding protein; Provisional
Probab=100.00 E-value=2.1e-52 Score=441.84 Aligned_cols=220 Identities=46% Similarity=0.770 Sum_probs=200.5
Q ss_pred cccccccccccccccCCceeeeccCCCcceEEEEeecCHHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHH
Q psy2376 665 CKPKKKLNIKKYEDYCPNGLQVEGRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLI 744 (896)
Q Consensus 665 ~~~~~~~~~~~~e~wd~~Gl~~~~~~~v~~i~~~~~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~ 744 (896)
.++++++|++.+++|||+|||+++.++|++|++|+|+|++++++|+++|||+||||||+||+|.++...+++++++++++
T Consensus 8 ~~~~~~~~~~~~~~wd~~Gl~v~~~~~v~~I~~alD~t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li 87 (247)
T PRK10799 8 QLINEKLNSAAISDYAPNGLQVEGRETVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLL 87 (247)
T ss_pred HHHHhhcCHhhhccCCCceeEeCCcccccEEEEEeCCCHHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHH
Confidence 36789999999999999999998878999999999999999999999999999999999999988766778899999999
Q ss_pred HcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEE
Q psy2376 745 INKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI 824 (896)
Q Consensus 745 ~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~ 824 (896)
+|||+|||+|||||.++++|+|++||+.|||++..... +++.+|+ +++|+|++||++++|++|+.+.+++
T Consensus 88 ~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~--~~~~~g~--------l~~~~s~~~l~~~vk~~l~~~~~~~ 157 (247)
T PRK10799 88 ANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIE--PLVPWGE--------LTMPVPGLELASWIEARLGRKPLWC 157 (247)
T ss_pred HCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcC--CceeeEE--------CCCCcCHHHHHHHHHHHhCCCeEEE
Confidence 99999999999999998679999999999998653322 3334454 4678999999999999999987677
Q ss_pred cCC-CCceeEEEEEecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCChhhhhhhhhhccc
Q psy2376 825 GDL-NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNRE 894 (896)
Q Consensus 825 g~~-~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH~~sE~~~~~~~~~ 894 (896)
|+. +++|+|||+|+|||++++++|.+.|||+|||||+|||++++|.+.|+++|++|||+||++||+.++|
T Consensus 158 ~~~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~h~~~~A~~~gl~li~~GH~~sE~~~~~~la~ 228 (247)
T PRK10799 158 GDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSE 228 (247)
T ss_pred CCCCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCcchHHHHHHHHCCCeEEEcCchHHHHHHHHHHHH
Confidence 765 4799999999999999999999999999999999999999999999999999999999999998776
No 9
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-49 Score=415.12 Aligned_cols=222 Identities=35% Similarity=0.504 Sum_probs=201.3
Q ss_pred cccccccccccccccCCceeeecc-CCCcceEEEEeecCHHHHHHHHHcCCCEEEEccCCCccCCCCcc-CChHHHHHHH
Q psy2376 665 CKPKKKLNIKKYEDYCPNGLQVEG-RSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNI-VGIKKKRLEQ 742 (896)
Q Consensus 665 ~~~~~~~~~~~~e~wd~~Gl~~~~-~~~v~~i~~~~~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~-~~~~~~~~~~ 742 (896)
-.+|+++|++.++||||+|||+++ ++++++|++++|+|++++++|++.+||+||+|||++|.+.++.. ++++++++++
T Consensus 8 ~~le~~~p~~~a~d~d~~GLqv~~~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~ 87 (250)
T COG0327 8 ELLEEFLPPELAEDWDNNGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKA 87 (250)
T ss_pred HHHHhhcCHHHhhccCcceEEeCCCCcccceEEEEeeCCHHHHHHHHHCCCCEEEEcCchhcCCCccccccchHHHHHHH
Confidence 367999999999999999999998 78999999999999999999999999999999998888887754 6889999999
Q ss_pred HHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcE
Q psy2376 743 LIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI 822 (896)
Q Consensus 743 l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~ 822 (896)
+++|||++|++|||+|+|++ |.|+++++.+++....+....++|..|+ +++++|++|+++++|+.++.+.+
T Consensus 88 li~~~I~ly~~HtnlD~~~~-g~N~a~~~~l~~~~~~~~~~~~~g~~g~--------~~~~~~l~~l~~~i~~~l~~~~~ 158 (250)
T COG0327 88 LIQNDINLYAAHTNLDAHPE-GGNDALAAALLGAEELPPFGEGLGRVGE--------LKEPTTLEELAERIKAKLGRPPL 158 (250)
T ss_pred HHhCCCeEEEcccccccccc-cccHHHHHHhcCcccccccccccceEEE--------eCCCCCHHHHHHHHHHHcCCCCE
Confidence 99999999999999999987 8899988888887666554445555565 46889999999999999998877
Q ss_pred EE-cCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCChhhhhhhhhhcccC
Q psy2376 823 VI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNREL 895 (896)
Q Consensus 823 ~~-g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH~~sE~~~~~~~~~~ 895 (896)
++ ++.++.|+|||+|+|||.+++++|.+.|+|+|||||++||++++|+|.|+++||+|||+||++|++.+.|+
T Consensus 159 ~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~~~a~e~gi~~i~~gH~~tE~~g~~~l~~~ 232 (250)
T COG0327 159 RVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTAHDARELGLSVIDAGHYATERPGLKALAEL 232 (250)
T ss_pred EEccCccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHHHHHHHCCCeEEecCchHHHHHHHHHHHHH
Confidence 54 45789999999999999999999999999999999999999999999999999999999999999988774
No 10
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=353.29 Aligned_cols=382 Identities=43% Similarity=0.742 Sum_probs=335.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|+++|++++++.+|++||++||+|++++|+.+|++..+|||++|+.+||++..++++|.++++++|.++++..+++++.+
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIV-YLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKI 159 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~-~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~ 159 (896)
+++.+.+..+...+.+++++++.+++|++. ..+++|+ +++...++...+++++|+++++++.+++.+++|+.++|..
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~--~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF--DETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeech
Confidence 999888888888999999999999999999 5567776 4554558999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHH-------------------------HHHHHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHH
Q psy2376 160 PAFTPILLNISC-------------------------GALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGP 214 (896)
Q Consensus 160 ~~i~~ii~nii~-------------------------gi~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP 214 (896)
+++++++.|+.. |+.|++++++.++|.+..++|++. ++.+.+|++.+...|
T Consensus 165 ~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~----~~~~~lk~~~~~~~p 240 (518)
T COG0728 165 PAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG----FKDPGLKRFLKLMLP 240 (518)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC----CCchhHHHHHHHHHH
Confidence 999999998764 478899999999998887788776 666899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh------
Q psy2376 215 SVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW------ 288 (896)
Q Consensus 215 ~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~------ 288 (896)
.+++..+.|++..+|+.+++++.++++++++||+|+.++|.+++..+++++++|.+|++..++|.+++++..++
T Consensus 241 ~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 241 ALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred --------------------------------------------------------------------------------
Q psy2376 289 -------------------------------------------------------------------------------- 288 (896)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (896)
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~ 400 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHH
Confidence
Q ss_pred ------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhHHH-HHHHHHHHHHHHHHHHHHHHhhh--hhccC
Q psy2376 289 ------IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVF-FIRLVIALLLLVIVALWGNSYFN--WLGMQ 359 (896)
Q Consensus 289 ------i~~~Gi~G~aia~~is~~i~~il~~~~l~r~~~~~~~~~~~~~-i~k~lias~im~~v~~~i~~~l~--~~~~~ 359 (896)
.+.+|..|++++++++.++++.+.++.++|+..+.+.+.|... +.|.++++++|+.+.|.+..... |...
T Consensus 401 ~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~- 479 (518)
T COG0728 401 LLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFLILKLLLASAIMAAALLALLHLAQREWLLG- 479 (518)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 6788999999999999999999999999999887766555433 48999999999999998876652 2110
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2376 360 AHPIFRIVALLLILLFCGITYFLALRIMGF 389 (896)
Q Consensus 360 ~~~~~~li~l~i~i~ig~ivY~~ll~ll~~ 389 (896)
.........+...+.++.++|++.....+.
T Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~ 509 (518)
T COG0728 480 GLLLIRLGVLLLLVLLGAGVYFAMLLLLGF 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112334455666777777777666553
No 11
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.9e-34 Score=335.91 Aligned_cols=383 Identities=37% Similarity=0.578 Sum_probs=319.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++.|++.++++++++++++|+++++++++.+|+++.+|+|++++++++.+..++.++|++++++|.+.++.+++ ++++
T Consensus 1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~ 78 (502)
T TIGR01695 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEAR 78 (502)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence 57899999999999999999999999999999987768999999999888877776789999999998765433 4556
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 82 KLIDH-VATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 82 ~~~~~-~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
+...+ .++..++.++++++++++++|++..++++|. +++..+++..|++++++++++..+.+++++++|+.++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGF--ADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIP 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHH
Confidence 54444 4445555566678889999999999887666 77778999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-----------H---HH-----------HHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHH
Q psy2376 161 AFTPILLNISC-----------G---AL-----------QIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPS 215 (896)
Q Consensus 161 ~i~~ii~nii~-----------g---i~-----------~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~ 215 (896)
++.+++.|++. | .. +.++.+++.++.+.+++++++ ++++.+|+++++++|.
T Consensus 157 ~~~~i~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~l~~~~p~ 232 (502)
T TIGR01695 157 SFSPILFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFN----FRDPGLKRFLKLFLPT 232 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCC----CCChhHHHHHHHHHHH
Confidence 99988877654 1 11 111222333444334444443 5677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh-------
Q psy2376 216 VFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW------- 288 (896)
Q Consensus 216 ~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~------- 288 (896)
++++++.+++..+|+.+.+.++++++++|++++++.++|.+++..+++++++|.+|++++++|.+++++.+++
T Consensus 233 ~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 233 TLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988889999999999999999998778889999999999999999999999999887
Q ss_pred --------------------------------------------------------------------------------
Q psy2376 289 -------------------------------------------------------------------------------- 288 (896)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (896)
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~ 392 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHH
Confidence
Q ss_pred -----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchH
Q psy2376 289 -----IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPI 363 (896)
Q Consensus 289 -----i~~~Gi~G~aia~~is~~i~~il~~~~l~r~~~~~~~~~~~~~i~k~lias~im~~v~~~i~~~l~~~~~~~~~~ 363 (896)
++.+|+.|+|+|+++++++..++..++++|+....+...+.+.+.|+++++++|++++++......+ ....
T Consensus 393 l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~m~~~~~~~~~~~~~----~~~~ 468 (502)
T TIGR01695 393 LSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYLIVSVSLG----GVLV 468 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHH
Confidence 5789999999999999999999999999988765556777889999999999999998876642100 0124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHh
Q psy2376 364 FRIVALLLILLFCGITYFLALRIMGFLFLNEAI 396 (896)
Q Consensus 364 ~~li~l~i~i~ig~ivY~~ll~ll~~~m~~e~l 396 (896)
++++.+++.+++|+++|+++++++|.+..+|+.
T Consensus 469 ~~~~~l~~~~~~g~~vY~~~~~~~~~~~~~~~~ 501 (502)
T TIGR01695 469 KNLLGLLAIGLIGLLVYFLGLALLKIEELNLLL 501 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHhh
Confidence 678899999999999999999999998887765
No 12
>KOG4131|consensus
Probab=100.00 E-value=2.4e-37 Score=303.48 Aligned_cols=213 Identities=23% Similarity=0.318 Sum_probs=181.8
Q ss_pred cccccccccccccCCceeeec--c-CCCcceEEEEeecCHHHHHHHHHcCCCEEEEccCCCccCCCCcc-CChHHHHHHH
Q psy2376 667 PKKKLNIKKYEDYCPNGLQVE--G-RSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNI-VGIKKKRLEQ 742 (896)
Q Consensus 667 ~~~~~~~~~~e~wd~~Gl~~~--~-~~~v~~i~~~~~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~-~~~~~~~~~~ 742 (896)
+++..+.+.+++|||+||+++ . .++.++|.++.|+|..|.+||++.+|+.|+++||++|++.+.+. ..++++++.+
T Consensus 17 i~kfa~~~~~~sWDNvGLLve~p~~~~~k~kVlLT~DLTe~V~eEa~ek~~e~IvAYHP~IFr~~krIt~~~~~e~~vi~ 96 (272)
T KOG4131|consen 17 IQKFASLSAAESWDNVGLLVEKPSGSRKKKKVLLTNDLTESVAEEALEKNAESIVAYHPPIFRPLKRITKSYPQERKVIK 96 (272)
T ss_pred HhhhccchhhhcccccceEeecCCCccccceeeEeccchHHHHHHHHHhCCceeEeecCccccchhhhcccchHHHHHHH
Confidence 455666678999999999998 3 46789999999999999999999999999999999999998876 4667899999
Q ss_pred HHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccC-------cccccceeecccccccCCccCHHHHHHHHHh
Q psy2376 743 LIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKN-------NIGWIGKIINLKRYNFKKIITIKDLFHHITR 815 (896)
Q Consensus 743 l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~-------~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~ 815 (896)
+++|||++||+||.+|.++ +|+|+|+++.++....+|..+. ..| +|+.++ +..++++.|+++++|+
T Consensus 97 ~~~ngiavySPHtA~Daa~-~gVNdwls~gIN~~~~~p~~~t~~gp~~~~~G-~gr~~e-----~~~~~~~~~~l~~ik~ 169 (272)
T KOG4131|consen 97 AIANGIAVYSPHTAVDAAG-GGVNDWLSKGINANLSRPNDPTKNGPMEETIG-YGREEE-----TKINLNVVEILKRIKR 169 (272)
T ss_pred HHhcCceeecchhhhcccc-cchhHHHHHhhhhhhcCCccccccCCCccccc-ccceee-----ccCcccHHHHHHHHHh
Confidence 9999999999999999997 5999999999995445554432 122 467653 5678899999999999
Q ss_pred HhCCCcEE----EcC-CCCceeEEEEEecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCChhhhhhhhh
Q psy2376 816 KIGKKPIV----IGD-LNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKS 890 (896)
Q Consensus 816 ~l~~~~~~----~g~-~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH~~sE~~~~~ 890 (896)
+++.++ .|+ .+..|++||+|+|||++.++. .++|+|+|||++||+.++|.++|++||.++|.+|||.++.
T Consensus 170 --~l~~v~val~~g~~~~~~i~~V~vcAgsg~svlk~---~~adly~TGEmSHH~vL~~~~~g~sVilc~HSNtERgfL~ 244 (272)
T KOG4131|consen 170 --GLSSVRVALAVGHTLESQIKKVAVCAGSGSSVLKG---VDADLYITGEMSHHDVLDAAANGISVILCEHSNTERGFLS 244 (272)
T ss_pred --cCCeEEEeeccCCccccceeEEEEeeccCcceecc---ccccEEEeccccHHHHHHHHHcCCeEEEecCCCccchhHH
Confidence 666653 232 356799999999999999875 5799999999999999999999999999999999998875
Q ss_pred h
Q psy2376 891 P 891 (896)
Q Consensus 891 ~ 891 (896)
-
T Consensus 245 d 245 (272)
T KOG4131|consen 245 D 245 (272)
T ss_pred H
Confidence 4
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=3.8e-32 Score=314.29 Aligned_cols=319 Identities=34% Similarity=0.611 Sum_probs=293.9
Q ss_pred HHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 28 FARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAP 107 (896)
Q Consensus 28 la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~~~~~~~~l~li~~lli~ll~~l~a~ 107 (896)
+|+.+|++..+|+|++|+++|+++..++.+|+++++++|.+++.. ++++++.+++.++.+.+..++++++++++++++|
T Consensus 1 iA~~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~ 79 (451)
T PF03023_consen 1 IAYFFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAP 79 (451)
T ss_pred CcHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999888889999999999998 7899999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhHHHHHHHHHH----------------
Q psy2376 108 IIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISC---------------- 171 (896)
Q Consensus 108 ~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i~~ii~nii~---------------- 171 (896)
++..++.+|+ +++..+++..++++++|..++.++++++.+++|++++|..|++++++.|+..
T Consensus 80 ~iv~~la~g~--~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~~~i 157 (451)
T PF03023_consen 80 PIVRLLAPGF--SPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQENI 157 (451)
T ss_pred HHHHHHCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999 9999999999999999999999999999999999999999999999988754
Q ss_pred ----------HHHHHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q psy2376 172 ----------GALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSL 241 (896)
Q Consensus 172 ----------gi~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l~~~~~~i~~~vd~~i~s~lg~~av 241 (896)
++.|++++++..+|.+.+++++++ ++++.+|++++...|.++++...|++..+|+.+++.++++++
T Consensus 158 ~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~v 233 (451)
T PF03023_consen 158 YALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFD----WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSV 233 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 145666677777887777777666 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh---------------------------------
Q psy2376 242 SCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW--------------------------------- 288 (896)
Q Consensus 242 a~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~--------------------------------- 288 (896)
++++||+++.++|.++++.+++++++|.+|++..++|.+++++..++
T Consensus 234 s~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F 313 (451)
T PF03023_consen 234 SALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAF 313 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999887
Q ss_pred -----------------------------------------------------------hhhhhhHHHHHHHHHHHHHHH
Q psy2376 289 -----------------------------------------------------------IPIFAHSGLALSIGLGACLHA 309 (896)
Q Consensus 289 -----------------------------------------------------------i~~~Gi~G~aia~~is~~i~~ 309 (896)
.+.+|..|+++|++++.++++
T Consensus 314 ~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 314 TAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999
Q ss_pred HHHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2376 310 SFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYF 353 (896)
Q Consensus 310 il~~~~l~r~~~~~~~~~~~~~i~k~lias~im~~v~~~i~~~l 353 (896)
++.++.++|+.+....+.+...+.+.++++.+|+.+.+++.+..
T Consensus 394 ~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T PF03023_consen 394 LLLYILLRRRLGLFSFRKILLFLLKILLASALMAVILLLLKQLF 437 (451)
T ss_pred HHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998866777777778888888999988888877654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=1.1e-25 Score=264.76 Aligned_cols=368 Identities=11% Similarity=0.071 Sum_probs=291.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
|..|++.|.+++++++++++++..++++|.+||+ +.|.+++++++.+++. .+.+.|++.++++ . ++ +.+
T Consensus 6 ~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~-~~G~~~~~~~~~~~~~-~~~~~Gl~~aii~----~---~~--~~~ 74 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQLTVLARILDNH-QFGLLTMSLVIIGFAD-TLSDMGIGASIIQ----R---QD--ISH 74 (492)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHH-HccHHHHHHHHHHHHH-HHHHcCHHHHHHh----c---cc--CCH
Confidence 5789999999999999999999999999999996 6789999999988887 4556778887763 1 11 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+..++.+++.++.++++++++++++|++..++. +|+ ...+++++++.+++..+...+.+++|++.+|+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a 145 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-----NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLA 145 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence 445678888889999999999999999987763 444 35678888888999999999999999999999888
Q ss_pred HHHHHHHHHH------------H--------HHH-HHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy2376 162 FTPILLNISC------------G--------ALQ-IIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVF 220 (896)
Q Consensus 162 i~~ii~nii~------------g--------i~~-~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l~~~ 220 (896)
..+++.+++. | +.+ .+..+........+++|++. ++++.+|++++++.|.+.+++
T Consensus 146 ~~~~~~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~k~ll~~~~~~~~~~~ 221 (492)
T PRK10459 146 KIEISAVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALH----FSLASVKPNLSFGAWQTAERI 221 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCccce----ecHHHHHHHHhhhHHHHHHHH
Confidence 7777665543 1 111 11111111111112344433 456789999999999999999
Q ss_pred HHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh-----------
Q psy2376 221 AAQISLMLNTNIAS-QMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW----------- 288 (896)
Q Consensus 221 ~~~i~~~vd~~i~s-~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~----------- 288 (896)
..+++..+|+.+++ ++|++++|.|+.|+++.++|.+.+..+++++++|.+|+. ++|.+++++.+++
T Consensus 222 ~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 222 INYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999865 568999999999999999998888888999999999986 6788888888776
Q ss_pred --------------------------------------------------------------------hh-------hhh
Q psy2376 289 --------------------------------------------------------------------IP-------IFA 293 (896)
Q Consensus 289 --------------------------------------------------------------------i~-------~~G 293 (896)
+| .+|
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~~G 379 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAG 379 (492)
T ss_pred HHHHHHHHhHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33 349
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q psy2376 294 HSGLALSIGLGACLHASFLYWYLRH-KRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLI 372 (896)
Q Consensus 294 i~G~aia~~is~~i~~il~~~~l~r-~~~~~~~~~~~~~i~k~lias~im~~v~~~i~~~l~~~~~~~~~~~~li~l~i~ 372 (896)
+.|+++++++++++..++.+++++| ..+ .+.+.+.+.+.|+++++++|+++++++....+ +....++.+++.
T Consensus 380 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~m~~~~~~~~~~~~------~~~~~~~~l~~~ 452 (492)
T PRK10459 380 LIGVALGFLLVQIINTILSYFLMIKPVIG-LSYRQYILSIWKPFYLSLPMLIVSYGLGLLLK------GHLALGMLLAVQ 452 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHH
Confidence 9999999999999999999988855 444 35666788999999999999998887764431 112456788999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHhhhcccc
Q psy2376 373 LLFCGITYFLALRIMGFLFLNEAINWLNIE 402 (896)
Q Consensus 373 i~ig~ivY~~ll~ll~~~m~~e~l~~L~~~ 402 (896)
+++|+++|++.+++++....+|+.+.+..+
T Consensus 453 ~~~g~~~Y~~~~~~~~~~~~~~~~~~~~~~ 482 (492)
T PRK10459 453 VAAGVLAYLLMIVLSRHALVVEVKRQFCRS 482 (492)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 999999999999999999999998887664
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.95 E-value=1.5e-24 Score=254.81 Aligned_cols=359 Identities=16% Similarity=0.201 Sum_probs=274.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKK 82 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~ 82 (896)
+.|++.|++++++++++++++..++++|.+|++ ..|+++++.++..++..+ .+.|++.++++.++++.+++|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~-~~G~~~~~~~~~~~~~~~-~~~Gl~~a~~~~is~~~~~~~~~~~~~ 78 (488)
T TIGR02900 1 FLKGTFILTIANLITRILGFIFRIVLSRILGAE-GVGLYGMAMPIYFLFITL-TTGGLPVAISKFVAEASAKNDRKNIKK 78 (488)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HhhHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHhccchhhHHH
Confidence 368999999999999999999999999999996 567999999988887754 455799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhH
Q psy2376 83 LIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAF 162 (896)
Q Consensus 83 ~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i 162 (896)
.+.+.+++.+++++++++++++++|++..++.. +++ ...+++++++.+++..+..++++++|+.++++..++
T Consensus 79 ~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~----~~~----~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (488)
T TIGR02900 79 ILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLK----DER----SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAY 150 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcC----Chh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHH
Confidence 999999999999999999999999999887643 444 246788999999999999999999999999999998
Q ss_pred HHHHHHHHH------------------HH---------H---HHHHHHHHHHHcCC-cceeecCCCCCCCCHHHHHHHHH
Q psy2376 163 TPILLNISC------------------GA---------L---QIIIQIPSLIKIGM-FPHIKLNPSHGFKNIAVRRILKK 211 (896)
Q Consensus 163 ~~ii~nii~------------------gi---------~---~~li~~~~l~k~~~-~~~~~~~~~~~~~~~~lk~ll~~ 211 (896)
.+++.+++. ++ . ..++.+++++++.. +.++.+.....++++.+|+++++
T Consensus 151 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~ 230 (488)
T TIGR02900 151 IQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSV 230 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHH
Confidence 877654432 00 1 11112222222211 11111110012335689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----Cc------chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy2376 212 MGPSVFSVFAAQISLMLNTNIASQM----RE------GSLSCL-SYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTE 280 (896)
Q Consensus 212 glP~~l~~~~~~i~~~vd~~i~s~l----g~------~ava~~-~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~ 280 (896)
++|.+++++..++...+|+.+.+.+ +. ..++.| +.+.++.+++. .+..+++++++|.+|++++++|++
T Consensus 231 ~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~~~~~~~~ 309 (488)
T TIGR02900 231 SLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEAMAKKNYS 309 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999877542 11 122333 35677888886 678999999999999999999999
Q ss_pred HHHHHHhh------------------------------------------------------------------------
Q psy2376 281 EYSAILDW------------------------------------------------------------------------ 288 (896)
Q Consensus 281 ~~~~~~~~------------------------------------------------------------------------ 288 (896)
++++..++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 389 (488)
T TIGR02900 310 SIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLI 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 99998877
Q ss_pred ------------h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2376 289 ------------I--PIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFN 354 (896)
Q Consensus 289 ------------i--~~~Gi~G~aia~~is~~i~~il~~~~l~r~~~~~~~~~~~~~i~k~lias~im~~v~~~i~~~l~ 354 (896)
+ |.+|+.|+|+++++++++..++.+++++|..+.. ...+++.+++..++++..+.+......+
T Consensus 390 ~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (488)
T TIGR02900 390 GAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIRIT---IDLSDFLIFALLGILVYLGLSLLKYIIF 466 (488)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 7899999999999999999999999999877642 2255666665555555443333222111
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHH
Q psy2376 355 WLGMQAHPIFRIVALLLILLFCGITYFL 382 (896)
Q Consensus 355 ~~~~~~~~~~~li~l~i~i~ig~ivY~~ 382 (896)
..+.++.+++.+++|+++|++
T Consensus 467 -------~~~~~~~~~~~~~~~~~~Y~~ 487 (488)
T TIGR02900 467 -------NPNILINLLLIIILGFSLYIL 487 (488)
T ss_pred -------hhhHHHHHHHHHHHHHHHHhc
Confidence 124578889999999999975
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=6.5e-23 Score=237.39 Aligned_cols=278 Identities=14% Similarity=0.172 Sum_probs=236.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|.+++.++++.+.+++..+.+++++.++.+ +|++ ..++.++++++..++..++. +++.+..+.+||+.|++|++++
T Consensus 17 k~l~~la~P~i~~~l~~~l~~~vD~~~vG~-~~~~-alaav~la~~i~~~~~~~~~--gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 17 KLLLKLAIPIILGNLLQTLYGLVDTFMVGH-LGAE-ALAAVGLANPIFFLIIAIFI--GLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHH-HHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHcCCchHHH
Confidence 357899999999999999999998888655 5564 45588999999988886653 6999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
++..++.+++.++++++++++.+.++++++.++++ ++++.+.+..|++++..+.|+..+..++++++|+.|+.+.|
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~----~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 168 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA----PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTP 168 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 99999999999999999999999999999999965 67799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH---H------H---------------H---HHHHHHHHHHHHcCC-cceeecCCCCCCCCHHHHHHHHHH
Q psy2376 161 AFTPILLNIS---C------G---------------A---LQIIIQIPSLIKIGM-FPHIKLNPSHGFKNIAVRRILKKM 212 (896)
Q Consensus 161 ~i~~ii~nii---~------g---------------i---~~~li~~~~l~k~~~-~~~~~~~~~~~~~~~~lk~ll~~g 212 (896)
++..++.|++ + | + ..+++.++++++++. ...+..+ ..+++++.+|++++.|
T Consensus 169 m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lG 247 (455)
T COG0534 169 MYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK-LLKPDRKLLKEILRLG 247 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh-ccCCCHHHHHHHHHhc
Confidence 9887765443 3 1 1 112233334444321 0111111 1136678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 213 GPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 213 lP~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
+|..+.++.......+-+.+.+.+|+.++|+++++.++.++.. ++..++++++.|.+++++|++|.+++++..+.
T Consensus 248 ~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~ 322 (455)
T COG0534 248 LPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNYKRARRAARL 322 (455)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 78899999999999999999999999999887
No 17
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=2.2e-21 Score=225.67 Aligned_cols=278 Identities=10% Similarity=0.077 Sum_probs=228.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++.++++.+.+++..+.+++++.++++.+|+++ ..++++++++..++..+. .+++.+..++++|+.|++|+++++
T Consensus 13 ~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~-laa~~~~~~~~~~~~~~~--~~~~~g~~~lvsq~~Ga~~~~~~~ 89 (453)
T PRK09575 13 TFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEG-LAGINMAWPVIGIILGIG--LMVGMGTGSLLSIKRGEGDLEKAK 89 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHhcCCCHHHHH
Confidence 56788888999999999999999999888789754 458888888877776543 358888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+.+...+.+.++++++++++.+++++++..+++. +++..+.+..|+++.+++.|+..+...+.+++|+.++.+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~----~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 90 RILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA----EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 9999999999999999999999999999999854 788999999999999999999999999999999999999888
Q ss_pred HHHHHH---HHHH-------------H------HH---HHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHH
Q psy2376 162 FTPILL---NISC-------------G------AL---QIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSV 216 (896)
Q Consensus 162 i~~ii~---nii~-------------g------i~---~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~ 216 (896)
+..++. |++. | +. ..++.++++++++...+++.+ ..+++++.+|++++.|+|..
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~ig~P~~ 244 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLK-ELRFNWSLAPKIVLLGSSSF 244 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeec-cCCcCHHHHHHHHHhChhHH
Confidence 766544 4333 1 11 122222333332222222222 12245678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 217 FSVFAAQISLMLNTNIASQMRE-GSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 217 l~~~~~~i~~~vd~~i~s~lg~-~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
+......+...+.+.+.+.+|+ .++++++.+.++..+.. ++..+++.+..|.+|+++|+||.+++++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~ 316 (453)
T PRK09575 245 FMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYY-LVAEGIAEGMQPPVSYYFGARQYDNIKKLLKL 316 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhcCCChHHHHHHHHH
Confidence 9999888888887777777775 58999999999999987 68899999999999999999999999999998
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.91 E-value=2.2e-21 Score=224.33 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=228.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|+++|.+.++.+.+++..+.++++..++++..|+.+ ..+++++.++..++..+. .+++.+..++++|+.|++|++++
T Consensus 9 k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~a-lAa~~l~~~i~~~~~~~~--~~~~~g~~~lvsq~~Ga~~~~~~ 85 (441)
T PRK10367 9 KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVY-LGGVAVGATATSFLFMLL--LFLRMSTTGLTAQAFGAKNPQAL 85 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCHHHH
Confidence 357889999999999999999998888876446543 458889988888776554 35899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
++..++.+++.++++++++++...+.+++..+++. ++++.+++..|+++++++.|+..+..++++++|+.++.+.+
T Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~----~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 161 (441)
T PRK10367 86 ARALVQPLLLALGAGALIALLRTPLIDLALHIVGG----SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAP 161 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999998999999999988854 89999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH---H-------------H------HHH---HHHHHHHHHHcCCcceeecCCCCCCC-CHHHHHHHHHHHH
Q psy2376 161 AFTPILLNIS---C-------------G------ALQ---IIIQIPSLIKIGMFPHIKLNPSHGFK-NIAVRRILKKMGP 214 (896)
Q Consensus 161 ~i~~ii~nii---~-------------g------i~~---~li~~~~l~k~~~~~~~~~~~~~~~~-~~~lk~ll~~glP 214 (896)
++..++.+++ . | +.+ .++.++++++.....+.+.+ ..+.+ ++.+|++++.|+|
T Consensus 162 ~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~ig~P 240 (441)
T PRK10367 162 VILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLE-MLKTAWRGNFRRLLALNRD 240 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHH-HhhhhhHHHHHHHHHhCch
Confidence 9876665433 2 1 111 22222333332110111111 00112 2468999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 215 SVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 215 ~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
..++.........+-+.+++.+|+.++++++++.++.++.. ++..+++++..|.+++++|++|.+++++..++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~ 313 (441)
T PRK10367 241 IMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDGSQLLDVWRA 313 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999988888888899999999999999999999988 78999999999999999999999999999887
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.90 E-value=6.4e-21 Score=222.64 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=230.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++.+++.++.+++..+.++++..++++ +|+.+ ..+++++.++..+...+. .|++.+..+.++|+.|++|+++++
T Consensus 30 ~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~a-lAA~~i~~~i~~~~~~~~--~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 30 EITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEA-MAGVGLADSFNMVIMAFF--AAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCHHHHH
Confidence 56888999999999999999998888765 89864 458899999877776554 369999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+.....+.+.++++++++++.+++++++..++..+. |++..+++..|+++++++.|+..+...+++++|+.++.+.++
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDA--TPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 999999999999999999999999999999985323 889999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHHH-----------------H------HHH---HHHHHHHHHHc-CCcceeecCC-CCCCCCHHHHHHHH
Q psy2376 162 FTPILL---NISC-----------------G------ALQ---IIIQIPSLIKI-GMFPHIKLNP-SHGFKNIAVRRILK 210 (896)
Q Consensus 162 i~~ii~---nii~-----------------g------i~~---~li~~~~l~k~-~~~~~~~~~~-~~~~~~~~lk~ll~ 210 (896)
+..++. |++. | +.+ .++.++++.++ +...+++++. ..+++++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 877664 3332 1 111 22222233322 1111222110 01245678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 211 KMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 211 ~glP~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
.|+|..+..+...+...+-+.+++.+|+.++|+++++.++.++.. ++..+++++..|.+++++|++|.+++++..+.
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~ 340 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQIAQAERQLRH 340 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998888888888888899999999999999999988 68899999999999999999999999999887
No 20
>PRK15099 O-antigen translocase; Provisional
Probab=99.90 E-value=4.7e-21 Score=220.72 Aligned_cols=271 Identities=14% Similarity=0.129 Sum_probs=215.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|++.|++.|.+.++++.++++++...+++|.+||+ ..+.++..+++..++..+. +.|++.+..+.++|+ ++|++++
T Consensus 1 ~~~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~-~~G~~~~~~~~i~~~~~~~-~~G~~~a~~~~ia~~--~~~~~~~ 76 (416)
T PRK15099 1 MSLAKASLWTAASTLVKIGAGLLVVKLLAVSFGPA-GVGQAGNFRQLITVLGVLA-GAGIFNGVTKYVAQY--HDQPQQL 76 (416)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHHHHHHH-cCCccceeeeeHHhc--CCCHHHH
Confidence 68999999999999999999999999999999996 4568788888877777544 567999999999987 5788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
++.+++++++.++++++++++++++++++..++.. +++ ...+++++.+..++..+...+.+++|+.++++.+
T Consensus 77 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~ 148 (416)
T PRK15099 77 RAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFG----HTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGN 148 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987743 454 2466777777777888899999999999999998
Q ss_pred hHHHHHH---HHHH-----------H------HHHHH---HHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHHH
Q psy2376 161 AFTPILL---NISC-----------G------ALQII---IQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVF 217 (896)
Q Consensus 161 ~i~~ii~---nii~-----------g------i~~~l---i~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l 217 (896)
+...++. |++. | +.+.+ +.+++.++++. .+.+.. +.+++++.+|+++++|+|.++
T Consensus 149 ~~~~~~~~~~~i~l~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~k~ll~~g~p~~~ 226 (416)
T PRK15099 149 ALSLIVGSLIGVAAYYLCYRLGGYEGALLGLALVPALVVLPAGIMLIRRGT-IPLSYL-KPSWDNGLAGQLGKFTLMALI 226 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHccc-eehHhh-hccCCHHHHHHHHHHHHHHHH
Confidence 8776654 3322 1 12222 22223333221 111110 112567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 218 SVFAAQISLMLNTNIAS-QMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 218 ~~~~~~i~~~vd~~i~s-~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
+++...+...+|+.+++ .+|+.++|+|+.+.|+.+.+..++..+++++++|.+|++ +|.++.++..++
T Consensus 227 ~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~ 295 (416)
T PRK15099 227 TSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVK 295 (416)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHH
Confidence 99999999999999885 889999999999999988665578899999999999995 677888887776
No 21
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=7e-21 Score=221.98 Aligned_cols=278 Identities=6% Similarity=-0.045 Sum_probs=228.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|++++.+++.++.+++..+.++++..++++ +|+.+ ..+++++.++.+++..+. .|++.+..+.++|+.|++|.+++
T Consensus 10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~-lg~~a-lAa~~i~~~i~~~~~~~~--~gl~~~~~~i~aq~~Ga~~~~~~ 85 (464)
T PRK00187 10 KAILRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEA-LAGGGLGAASYSFVSIFC--VGVIAAVGTLVAIRHGAGDIEGA 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCChhhH
Confidence 357889999999999999999998888877 79864 458899999888876553 36999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
++.+...+.+.++++++.+++.+ +.+++..+++. |++..+.+..|++++++++|+..+...+++++|+.++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~----~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 86 TRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ----APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999988777765 56889998854 89999999999999999999999999999999999999999
Q ss_pred hHHHHHH---HHHH-----------------H------HHHH---HHHHHHHHHcCCcceeecCC-CCCCCCHHHHHHHH
Q psy2376 161 AFTPILL---NISC-----------------G------ALQI---IIQIPSLIKIGMFPHIKLNP-SHGFKNIAVRRILK 210 (896)
Q Consensus 161 ~i~~ii~---nii~-----------------g------i~~~---li~~~~l~k~~~~~~~~~~~-~~~~~~~~lk~ll~ 210 (896)
++..++. |++. | +.+. +..++++++++...+.+++. ...++++.+|++++
T Consensus 161 ~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 240 (464)
T PRK00187 161 MVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWR 240 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHH
Confidence 8876543 4333 1 1111 11222333221111111110 01245678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 211 KMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 211 ~glP~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
.++|.++.+.+......+++.+++.+|+.++++++.+.++..+.. ++..+++++..|.+|+++|++|++++++..+.
T Consensus 241 lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~-~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~ 317 (464)
T PRK00187 241 LGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAF-MVPVGLSYAVTMRVGQHYGAGRLLEARRAGRV 317 (464)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877 67899999999999999999999999999987
No 22
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=3e-20 Score=216.58 Aligned_cols=277 Identities=11% Similarity=0.060 Sum_probs=224.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++.+.+.++..+...+.++++..+++ .+|+++. .+++++.++...+..+ . .|++.+..|.++++.+++|.++++
T Consensus 13 ~il~~~~P~~~~~~~~~~~~~~d~~~i~-~~g~~~l-aa~~~~~~~~~~~~~~-~-~g~~~a~~~~vs~~~g~~~~~~~~ 88 (456)
T PRK01766 13 QLLALALPILLAQVAQTAMGFVDTVMAG-GVSATDL-AAVAIGTSIWLPVILF-G-HGLLLALTPIVAQLNGAGRRERIA 88 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHH-HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhcCCChHHHH
Confidence 5678899999999999999999776665 4898644 5778887776655533 3 369999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+..+..+.+.++++++++++++++++++..+++. +++..+++..|+++++++.|+..+..++++++|+.++.+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 89 HQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL----EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 9999999999999999999999999999998854 888899999999999999999999999999999999999998
Q ss_pred HHHHHHHH---HH-----------------H------H---HHHHHHHHHHHHcCCc--ceeecCCCCCCCCHHHHHHHH
Q psy2376 162 FTPILLNI---SC-----------------G------A---LQIIIQIPSLIKIGMF--PHIKLNPSHGFKNIAVRRILK 210 (896)
Q Consensus 162 i~~ii~ni---i~-----------------g------i---~~~li~~~~l~k~~~~--~~~~~~~~~~~~~~~lk~ll~ 210 (896)
+..++.++ +. | + ...++.+++.++++.. .+...+ ...++++.+|++++
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~il~ 243 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKG-LYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhcc-ccCCCHHHHHHHHH
Confidence 87665432 21 1 1 1112222233332110 011100 01245678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 211 KMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 211 ~glP~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
.++|.+++....++...++..+.+.+|+.++++++.+.++.++.. ++..+++.++.|.+|+++|+||++++++..+.
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~ 320 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRTLDARQYAYI 320 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999988899999999999999999999999999887 67899999999999999999999999999887
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.87 E-value=5.5e-19 Score=197.77 Aligned_cols=269 Identities=11% Similarity=0.099 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHHHHHHHHH
Q psy2376 10 ISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVAT 89 (896)
Q Consensus 10 l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~~~~~~~~ 89 (896)
+++.+++..+.+++...++. .+|++ ..++++++.++..++..+ . .+++.+..|.++++.+++|++++++.++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~a~~i~~~~~~~-~-~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~ 77 (342)
T TIGR00797 2 AILANILQPLLGLVDTAFVG-HLGPV-DLAAVSLGSSVFMFLFSI-L-MGLGTATTALVAQAVGAGNYQRLGRQAQQSLL 77 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHh-cccHH-HHHHHHHhHHHHHHHHHH-H-HHHHHhHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 46778888888888666655 58864 567889998887776644 3 36999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhHHHHHHHH
Q psy2376 90 VLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNI 169 (896)
Q Consensus 90 l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i~~ii~ni 169 (896)
+..+++++++++++++++++..+++. +++..+.+..++++++++.++.++..++.+++|+.++++.+++.+++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 153 (342)
T TIGR00797 78 LALLLGLPVLLVGYFFIDPLLSLMGA----DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNV 153 (342)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999999999999998843 67788899999999999999999999999999999999999887776543
Q ss_pred HH------------H---------------HHHHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2376 170 SC------------G---------------ALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAA 222 (896)
Q Consensus 170 i~------------g---------------i~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l~~~~~ 222 (896)
+. | +.+.++.+++.+++ .+.+++++....++++.+|+++++++|.+++++..
T Consensus 154 ~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~ 232 (342)
T TIGR00797 154 INIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKA-KKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILE 232 (342)
T ss_pred HHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccccccCCCHHHHHHHHHhCchHHHHHHHH
Confidence 32 1 11111122223321 11111111012255678999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 223 QISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 223 ~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
++...+|+.+.+.+|++++++|+++.++.++.. ++..+++++..|.++++++++|.+++++.+++
T Consensus 233 ~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
T TIGR00797 233 SLSFALLALLVARLGSIALAAHQIALNVESLLF-MPAFGFGIAVSILVGQALGAGDPKRAKEVARV 297 (342)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999877 67899999999999999999999999998876
No 24
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.81 E-value=7.9e-17 Score=189.14 Aligned_cols=264 Identities=19% Similarity=0.252 Sum_probs=191.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++.|++.+.+.++++++++|++..++++|.+|++ +.|.|++++++..++..+. +.|++.++++.++++.+++++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~-~~G~~~~~~~~~~~~~~i~-~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 7 KLIKGALWLLLGTLISALLGLITIPLLARLLGPE-GFGLYALALAIIGLFSILA-DFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcc-cceeeehHHHHHHHHHHHH-HcCCcHHHHHHHHHhhcccHHHHHH
Confidence 6789999999999999999999999999999995 6789999999999988554 6789999999999986644434333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 82 KL-IDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 82 ~~-~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
.. ........++++++...+.+...+. .+.....++++++..++.....+.++++|+.++++..
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLLAPI---------------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPL 149 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 32 2222222222222221111111111 1124667788899999999999999999999999998
Q ss_pred hHHHHHHH-HHH-------------H--------HHHHHHHHHHHH-HcCCcceeecCCCCCCCCHHHHHHHHHHHHHHH
Q psy2376 161 AFTPILLN-ISC-------------G--------ALQIIIQIPSLI-KIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVF 217 (896)
Q Consensus 161 ~i~~ii~n-ii~-------------g--------i~~~li~~~~l~-k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l 217 (896)
+.. .+.+ .+. + +....+.....+ +++...++.++ ..++.+|+++++++|..+
T Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~p~~~ 224 (480)
T COG2244 150 ALS-IVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR----FSLALLKELLRFGLPLLL 224 (480)
T ss_pred hhH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC----chhHHHHHHHHHhhHHHH
Confidence 888 4433 111 0 111111112222 22222222222 226789999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 218 SVFAAQISLMLNTNIAS-QMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 218 ~~~~~~i~~~vd~~i~s-~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
++....+...+|+.+.+ ++|+..+|.|+.++++...+. .+..+++.+++|.+|+.+.+++.+++++..++
T Consensus 225 ~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~-~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~ 295 (480)
T COG2244 225 SSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLL-IVASALNRVLFPALSRAYAEGDRKALKKLLRQ 295 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999877 468899999998888888887 68899999999999999999999988777776
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.64 E-value=2.5e-13 Score=146.19 Aligned_cols=248 Identities=21% Similarity=0.285 Sum_probs=174.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKK 82 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~ 82 (896)
++|++.+.+.+++++++++++..++++|.+|++ +.|.+.++.++.+++..+ .+.|++.++++.+++...+ ++..+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~-~~G~~~~~~~~~~~~~~~-~~~G~~~~~~r~~~~~~~~--~~~~~~ 76 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPE-EYGIYSLALSIVSLLSIL-ADLGLSQAIVRFIAEYKDK--KELRSA 76 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HhHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhh--HHHHHH
Confidence 579999999999999999999999999999995 678999999998888744 4578999999999886442 344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhH
Q psy2376 83 LIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAF 162 (896)
Q Consensus 83 ~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i 162 (896)
+........++.+++. ++...+..++. +++. ...+........++........+++++.++++...+
T Consensus 77 ~~~~~~~~~~~~~~i~-----~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (273)
T PF01943_consen 77 YFSSVLFLLLIFSLIF-----LLILLIASFFG-----NPSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAI 143 (273)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHcC-----CchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443333333322 22333323332 2331 122222222222578888899999999999998887
Q ss_pred HHHHHHHHH---------------H------H---HHHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2376 163 TPILLNISC---------------G------A---LQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFS 218 (896)
Q Consensus 163 ~~ii~nii~---------------g------i---~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l~ 218 (896)
.+++.++.. + + ...++.++..+|.. ++++. .++++..|++++++.|.+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~ 217 (273)
T PF01943_consen 144 SNIISSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKL---RPRFS---FFSKKFFKEILRFGLPLFLS 217 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccccc---ccchHHHHHHHHHHHHHHHH
Confidence 776655433 0 1 11111222233221 12222 13367899999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 219 VFAAQISLMLNTNIASQ-MREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKAR 274 (896)
Q Consensus 219 ~~~~~i~~~vd~~i~s~-lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~ 274 (896)
++...+...+|+.+++. .|+.++|.|+.+.++...+. .+..++.++++|.+|+.+
T Consensus 218 ~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 218 SLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 99999999999998875 58889999999999999998 577899999999999863
No 26
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.37 E-value=5.6e-10 Score=118.85 Aligned_cols=228 Identities=20% Similarity=0.275 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 19 ITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFI 98 (896)
Q Consensus 19 llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~~~~~~~~l~li~~lli 98 (896)
+++|+..++++|.+|++ +.|.|.+.+++..++..+. +.|++..+++ . .++++++.++..+..... ++++
T Consensus 2 ~~~f~~~~~lar~l~~~-~~G~~~~~~s~~~~~~~~~-~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~----~~~~ 70 (251)
T PF13440_consen 2 GINFLFLILLARYLGPE-DFGIYALIFSIVSILSIVA-SLGLRQSLVR----S-AARDKQDIRSLLRFSLLV----SLLL 70 (251)
T ss_pred hHHHHHHHHHHHHCCHH-HhHHHHHHHHHHHHHHHHH-HHHHHHHHHH----h-hccCHHHHHHHHHHHHHH----HHHH
Confidence 57899999999999995 5789999999988887543 4567777775 1 224555555555544433 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhHHHHHHHHHH-------
Q psy2376 99 CVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISC------- 171 (896)
Q Consensus 99 ~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i~~ii~nii~------- 171 (896)
+++..++...+..++. +++ ...++.++.+..++......+++.++++++++......++..++.
T Consensus 71 ~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (251)
T PF13440_consen 71 AVILAILAILIAYFFG-----DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLL 141 (251)
T ss_pred HHHHHHHHHHHHHHhC-----Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555542 333 345666777888888999999999999999998877766554322
Q ss_pred --------H------HHHHHHHHHHHHHcCCcceeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Q psy2376 172 --------G------ALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQ-M 236 (896)
Q Consensus 172 --------g------i~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk~ll~~glP~~l~~~~~~i~~~vd~~i~s~-l 236 (896)
+ +.+.+...+..+..+. +++.. .+.+..| .++.+.|..++++.......+|+++++. +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l 214 (251)
T PF13440_consen 142 LYLGLNLWSILLAFIISALLALLISFYLLRR--KLRLS----FKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL 214 (251)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCC----chhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1111111121222211 12222 1223334 8999999999999999999999999887 8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 237 REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKA 273 (896)
Q Consensus 237 g~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~ 273 (896)
|+.++|.|+.+.++.+.+.+++..++++.++|.+||.
T Consensus 215 ~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 215 GPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999988778999999999999973
No 27
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.96 E-value=5.9e-08 Score=113.53 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=137.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
+++|.+++.++.+++.....++... +...+|+++. .+++++.++..+...+. .|++.+..++++|+.|++|+++++
T Consensus 237 ~il~lg~P~~~~~~~~~~~~~i~~~-~i~~~G~~al-Aa~~i~~~i~~l~~~~~--~gi~~a~~~lvgq~~Ga~~~~~~~ 312 (464)
T PRK00187 237 ELWRLGLPIGGTYAVEVGLFTFAAL-CMGALGSTQL-AAHQIALQIVSVAFMVP--VGLSYAVTMRVGQHYGAGRLLEAR 312 (464)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH-HHHHcCHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 5677888888888877766666554 4566999654 58999999888776543 369999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNY---KIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFK 158 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~---~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~ 158 (896)
+..+.++.+.++.+++++++++++.+++.+++..+- ++ ++.+.+..|+++.+++.++..+..++.+++|+.|+.+
T Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~--~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 313 RAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRN--DPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 999999999999999999999999999999984211 33 6889999999999999999999999999999999999
Q ss_pred hHhHHHHHHH
Q psy2376 159 IPAFTPILLN 168 (896)
Q Consensus 159 ~~~i~~ii~n 168 (896)
.+++..++..
T Consensus 391 ~~~~~~~~~~ 400 (464)
T PRK00187 391 TTFLIGLACY 400 (464)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 28
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.92 E-value=1.1e-07 Score=110.99 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=129.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKK 82 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~ 82 (896)
+++...+.++..+...+.-++...+++ .+|++....+++++.++..++.... .|++.+..|.++++.|++|.+++++
T Consensus 236 il~ig~P~~~~~~~~~~~~~~~~~~~~-~~g~~~~lAa~~i~~~i~~~~~~~~--~gi~~a~~~lvg~~~Ga~~~~~~~~ 312 (453)
T PRK09575 236 IVLLGSSSFFMYLYGSFVVALHNRLFM-EYGSALTVGAYAIVGYLMVLYYLVA--EGIAEGMQPPVSYYFGARQYDNIKK 312 (453)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHhcCCChHHHHH
Confidence 344555555555544444444455554 4575434568889988888877543 3699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhH
Q psy2376 83 LIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAF 162 (896)
Q Consensus 83 ~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i 162 (896)
.....+.+.+..+++++++++++.+++..++.+. ||+..+.+..|+++.+++.++.++..+..+++|+.++.+.+++
T Consensus 313 ~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~---~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 389 (453)
T PRK09575 313 LLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSG---DSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF 389 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999999999999999998631 6789999999999999999999999999999999999999887
Q ss_pred HHHHH
Q psy2376 163 TPILL 167 (896)
Q Consensus 163 ~~ii~ 167 (896)
..+..
T Consensus 390 ~~~~~ 394 (453)
T PRK09575 390 ISIGN 394 (453)
T ss_pred HHHHh
Confidence 76553
No 29
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.91 E-value=6.5e-07 Score=105.87 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=135.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++.+.+..+.+++..+...+...+ +..+|++ ..++|+.+..+..+...++. .+++.+..|.++++.+++|+++.+
T Consensus 224 ~~l~~~~p~~~~~~~~~~~~~id~~~-~~~~~~~-~v~~~~~a~~l~~~~~~~~~-~~i~~~~~P~~s~~~~~~~~~~~~ 300 (502)
T TIGR01695 224 RFLKLFLPTTLGSSASQITLLINTAL-ASFLEIG-SVSALYYANRIYQLPLGIFG-ISLSTVLLPKLSRHASEGNWNELR 300 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcc-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46777888888888888888887654 8888885 45689999888877665544 369999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVAT--GFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKI 159 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~--g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~ 159 (896)
+.....+.+..++++.++++++++++++..++.+ .+ +++....+..++++++++.++.++..+..+.+++.++.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 301 DLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAF--SEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999999999999999988753 23 5677888999999999999999999999999999999998
Q ss_pred HhHHHHH
Q psy2376 160 PAFTPIL 166 (896)
Q Consensus 160 ~~i~~ii 166 (896)
++...++
T Consensus 379 ~~~~~~~ 385 (502)
T TIGR01695 379 PFINSVI 385 (502)
T ss_pred CHHHHHH
Confidence 8776544
No 30
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.90 E-value=1e-07 Score=111.42 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=133.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++.+.+.++..++..+. +.....+...+|+. ...+++++.++.+++..+. .|++.+..+.++|+.|++|+++++
T Consensus 240 ~il~l~~P~~~~~~~~~~~-~~~~~~~~~~~G~~-~lAa~~i~~~i~~~~~~~~--~gl~~a~~~~v~~~~Ga~~~~~~~ 315 (456)
T PRK01766 240 RLLKLGLPIGLAIFFEVSL-FAVVTLLVSPLGTV-TVAAHQIALNFSSLLFMLP--LSLAMALTIRVGFELGAGRTLDAR 315 (456)
T ss_pred HHHHccchHHHHHHHHHHH-HHHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4556666666666555444 34444555678985 4568899999888877553 369999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+.....+.+..+++++++++++++++++..++.. ||++.+.+..|+++..+..++..+..+..+++|+.++.+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 316 QYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD----DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 9999999999999999999999999999999864 899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2376 162 FTPILLN 168 (896)
Q Consensus 162 i~~ii~n 168 (896)
...++..
T Consensus 392 ~~~~~~~ 398 (456)
T PRK01766 392 FITFIAY 398 (456)
T ss_pred HHHHHHH
Confidence 8877643
No 31
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.90 E-value=1.7e-07 Score=109.98 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=133.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
+++|..++..+..+...+..++.... ...+|+.. ..+++++.++..+..... .|++.+..++++++.|+++.++++
T Consensus 260 ~il~iG~P~~~~~~~~~~~~~~~~~~-~~~~G~~~-~Aa~~I~~~i~~~~~~~~--~gi~~A~~~lvg~~~Ga~~~~~a~ 335 (478)
T PRK10189 260 EVMGIGIPASIESVLFNGGKLLTQMF-VAGMGTSV-IAGNFIAFSIAALINLPG--NALGSASTIITGTRLGKGQIAQAE 335 (478)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHH-HHHcCHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34566666666555555555555544 45689854 458899998888876442 479999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+....+..+.++.+++++++.+++.+++..+|.. |+++.+++..++++.++..++.+++.+..+.+|+.++.+.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~----d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 336 RQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQ----DPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 9999999999999999999999999999999965 889999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2376 162 FTPILLN 168 (896)
Q Consensus 162 i~~ii~n 168 (896)
+.+++..
T Consensus 412 ~i~~~~~ 418 (478)
T PRK10189 412 WVSMLGM 418 (478)
T ss_pred HHHHHHH
Confidence 8766543
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.86 E-value=8.6e-10 Score=109.41 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHHHHHHHHH
Q psy2376 10 ISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVAT 89 (896)
Q Consensus 10 l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~~~~~~~~ 89 (896)
+++.+++..+.+.+...++++ +|+.+. .+++++..+.++...+. .|++.+..+.++++.|++|++++++..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~-a~~~i~~~~~~~~~~~~--~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~ 77 (162)
T PF01554_consen 2 IALMQLLQVLGFIIDTIFVGR-LGPEAL-AAYGIASSIFSILFMLI--FGLATALQILISQNIGAGDYKRAKKVVRQGLL 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHC-CTTCCC-CHCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCHHHH-HHHHHHHHHHHHHhhhc--ccccccccceeecccccccccccccccccccc
Confidence 456667776777776666555 598654 58899999988887543 46999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhHHHHHHH
Q psy2376 90 VLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLN 168 (896)
Q Consensus 90 l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i~~ii~n 168 (896)
+.++++++++++.+++.+++..++.. +++..+.+..|+++++++.|+..+...+.+++|+.|+.+.++...++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 152 (162)
T PF01554_consen 78 LSLIIGLLLSLVLLLFSEFILSLFGN----DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISF 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCTSSS----TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHH
T ss_pred cchhcccchhhhhhhHHHHHHHHhhh----hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 99999999999999999999998854 7889999999999999999999999999999999999999988877755
No 33
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.83 E-value=2e-07 Score=108.56 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=138.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++...+.++.++ .-..++.-...+...+|+. ...+++++.++..+..... .|++.+..+.++++.|+++.++++
T Consensus 242 ~i~~lG~p~~~~~~-~~~~~~~~~~~~~~~~G~~-~lAa~~i~~~i~~~~~~~~--~gi~~a~~~lvG~~~Ga~~~~~a~ 317 (455)
T COG0534 242 EILRLGLPIFLESL-SESLGFLLLTLFVARLGTV-ALAAYGIALRIASFIFMPP--FGIAQAVTILVGQNLGAGNYKRAR 317 (455)
T ss_pred HHHHhcccHHHHHH-HHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34566666666664 4444555555566789985 4569999999999988654 369999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+....++.+.++++++++++++++.++++.++.. ++++.+++..++++..+..++.....+..+++|+.++.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~----~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~ 393 (455)
T COG0534 318 RAARLALKLSLLIALLIALLLLLFREPIISLFTT----DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF 393 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999999999999999999999975 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2376 162 FTPILLNIS 170 (896)
Q Consensus 162 i~~ii~nii 170 (896)
+..++....
T Consensus 394 ~~~~~~~~~ 402 (455)
T COG0534 394 IISLLSYWG 402 (455)
T ss_pred HHHHHHHHH
Confidence 887775444
No 34
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.77 E-value=4.9e-06 Score=96.89 Aligned_cols=161 Identities=21% Similarity=0.215 Sum_probs=140.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
+++|...+..+++.+.++-.++ +..++..++++.. .+++.|..+..+...++.. .++++.-|.+++...++|.++.+
T Consensus 199 ~~~~~~~p~~l~~~~~qi~~lv-~~~laS~l~~G~v-s~l~YA~~l~~lp~~i~~~-~i~tv~~P~ls~~~~~~d~~~~~ 275 (451)
T PF03023_consen 199 RFLKLAIPLLLSSSISQINILV-DRALASFLGEGSV-SALNYAQRLYQLPLGIFAV-SISTVVFPKLSRLAAEGDWEEFR 275 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5678888888888888876655 6666888998654 5899999999998877764 69999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVA--TGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKI 159 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~--~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~ 159 (896)
+.++..+...+.+.+.+++.++++++++...+. +.| +.+....+...+++.++++|+.++..++.-.+.+.++.+.
T Consensus 276 ~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F--~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 276 KTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAF--TAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 999999999999999999999999999998764 445 7778889999999999999999999999999999999999
Q ss_pred HhHHHHHH
Q psy2376 160 PAFTPILL 167 (896)
Q Consensus 160 ~~i~~ii~ 167 (896)
|+...++.
T Consensus 354 ~~~~~~~~ 361 (451)
T PF03023_consen 354 PVRISVIS 361 (451)
T ss_pred HHHHHHHH
Confidence 98765543
No 35
>KOG1347|consensus
Probab=98.71 E-value=1.7e-05 Score=92.25 Aligned_cols=275 Identities=13% Similarity=0.028 Sum_probs=199.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|++.+.+.+....++..-.++++.. .++..+|+- ..++..++.+..+... .-...|++.+.-+..+|..+.+..+..
T Consensus 28 k~l~~ia~P~i~~~~~~~~~~~is~-~f~GhlG~l-eLaa~sla~s~~n~~~-~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 28 KELARLALPAILTFLAQPLLSLVST-AFAGHLGNL-ELASVSLANSFANITG-VSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-hhhccccch-HHHHHHHHHHhhcccc-hHHhhccchhhhcchHhhhcccccchh
Confidence 3567777887777777777777744 446789986 4557788887777632 112346999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIP 160 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~ 160 (896)
.....+...+....++.++ ++++++++|...++. +|+....+..|.+.+.|.++-.........++|+++.+.+.
T Consensus 105 g~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq----~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQ----DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCC----ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 8888888777776676555 566777899888865 89999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHH---H----------H---------H---HHHHHHHHHHHHcC-CcceeecCCCCCCCCHHHHHHHHHHHH
Q psy2376 161 AFTPILLNIS---C----------G---------A---LQIIIQIPSLIKIG-MFPHIKLNPSHGFKNIAVRRILKKMGP 214 (896)
Q Consensus 161 ~i~~ii~nii---~----------g---------i---~~~li~~~~l~k~~-~~~~~~~~~~~~~~~~~lk~ll~~glP 214 (896)
.+...+..++ . | + .....+..+....+ ...+..+. ...+.+++++++++|
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s----~~~~~~~~~~~lai~ 255 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFS----GEFDSWGPFFALAIP 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhh----HhhhhHHHHHHHhhc
Confidence 7766654333 2 1 1 11111222221111 01111111 125678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 215 SVFSVFAAQISLMLNTNIASQMRE--GSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 215 ~~l~~~~~~i~~~vd~~i~s~lg~--~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
..+...+..-...+-....+.++. .+++..++...+....+ ++..+++.+.-.+++..+|+|+.++.|.....
T Consensus 256 s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~-~~~~~~~~a~strv~neLGag~p~~ar~~~~v 330 (473)
T KOG1347|consen 256 SAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHL-MIPGAFSAAVSTRVSNELGAGKPKRARVSAKV 330 (473)
T ss_pred chheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHcCCChhhhhhHHHH
Confidence 988776655555555566666664 57788888888888777 56678899988899999999999998875543
No 36
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.65 E-value=4e-05 Score=88.79 Aligned_cols=166 Identities=18% Similarity=0.119 Sum_probs=140.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHH
Q psy2376 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIAT 80 (896)
Q Consensus 1 ~~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~ 80 (896)
|++.+...+..+++-++++.-++ +..+|..+.++..+ .++.+..++.+-..++. .++++++-|.+|+...++|.++.
T Consensus 232 k~~~~~~~p~~l~~sisQi~lli-~~~iAS~l~~Gsis-~l~YA~rl~qlPlGifg-vai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 232 KRFLKLMLPALLGVSISQINLLI-DTAIASFLAEGSVS-WLYYADRLYQLPLGIFG-VALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccccHH-HHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhcCChHHH
Confidence 35677788888888888887664 66669999886554 77888888888777775 46999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q psy2376 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVA--TGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFK 158 (896)
Q Consensus 81 ~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~--~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~ 158 (896)
++..+.++.+.+++++..++.++++++++...+. +.| +++...++...++..+.+++++.+.-++.-.+.+.++.+
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F--~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAF--TAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999998663 345 667778889999999999999999999999999999999
Q ss_pred hHhHHHHH---HHHHH
Q psy2376 159 IPAFTPIL---LNISC 171 (896)
Q Consensus 159 ~~~i~~ii---~nii~ 171 (896)
.|+...++ .|+++
T Consensus 387 tP~~i~ii~~~~n~~l 402 (518)
T COG0728 387 TPMKIAIISLVVNILL 402 (518)
T ss_pred cChHHHHHHHHHHHHH
Confidence 99876554 45544
No 37
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.64 E-value=2.2e-08 Score=95.00 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=41.0
Q ss_pred EEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 433 RLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 433 ~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
||||||+|++|++.++++ ..+|+++++++|+++++++++ +++|+++||||.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~---~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE---GPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-----EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc---CCcCEEEEECCc
Confidence 799999999999999875 247899999999999999987 479999999996
No 38
>PRK10459 colanic acid exporter; Provisional
Probab=98.57 E-value=5.2e-05 Score=89.50 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=129.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++...+.+..+++..+...+++.++++.+|++ ..|.|+.++.+......++. ..++.+..|.+++. ++|+++.+
T Consensus 208 ~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~-~vG~Y~~A~~l~~~~~~~i~-~~i~~v~~P~~s~~--~~~~~~~~ 283 (492)
T PRK10459 208 PNLSFGAWQTAERIINYLNTNIDTILIGRILGAE-VLGGYNLAYNVATVPPMKIN-PIITRVAFPVFAKI--QDDTEKLR 283 (492)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchH-hhhhHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHh--cCCHHHHH
Confidence 3556677888888888888888899999999995 57899999988877655554 34778888999875 56788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+.+...+.+...+++.+++.+.+++|++..++.+ + .+..+...++++++..++..+......++++.++.+.+.
T Consensus 284 ~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g-----~-~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 284 VGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFG-----E-KWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC-----h-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 9888888888888888899999999999887742 1 245678999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q psy2376 162 FTPILLNIS 170 (896)
Q Consensus 162 i~~ii~nii 170 (896)
..+++.+++
T Consensus 358 ~~~~~~~~~ 366 (492)
T PRK10459 358 KWNVFKTFL 366 (492)
T ss_pred HHHHHHHHH
Confidence 776665554
No 39
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.57 E-value=2.5e-06 Score=99.16 Aligned_cols=157 Identities=7% Similarity=-0.034 Sum_probs=120.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKK 82 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~ 82 (896)
++|...+..+..++..+. +.-...+...+|+. ...+++++.++..+..... .|++.+..+.++++.|++|.+++++
T Consensus 234 il~ig~P~~~~~~~~~~~-~~~~~~~~~~~G~~-alAa~~I~~~i~~~~~~~~--~gl~~a~~~lvg~~~Ga~~~~~a~~ 309 (441)
T PRK10367 234 LLALNRDIMLRSLLLQLC-FGAITVLGARLGSD-IIAVNAVLMTLLTFTAYAL--DGFAYAVEAHSGQAYGARDGSQLLD 309 (441)
T ss_pred HHHhCchHHHHHHHHHHH-HHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHcCCCHHHHHH
Confidence 344455555555555554 44444556679986 4569999999988887543 3699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---cchh
Q psy2376 83 LIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWS---QFKI 159 (896)
Q Consensus 83 ~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~---~f~~ 159 (896)
.......+.++.+++++++++++.++++.+|.. |+++.+++..++++.++..++.....++.+++++.. +.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~----d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~ 385 (441)
T PRK10367 310 VWRAACRQSGIVALLFSLVYALAGEHIIALLTS----LPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRN 385 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHH
Confidence 999999999999999999999999999999964 899999999999998876443323434444444444 5888
Q ss_pred HhHHHHHH
Q psy2376 160 PAFTPILL 167 (896)
Q Consensus 160 ~~i~~ii~ 167 (896)
+++..++.
T Consensus 386 ~~~~~~~~ 393 (441)
T PRK10367 386 SMAVAAAG 393 (441)
T ss_pred HHHHHHHH
Confidence 87776664
No 40
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.49 E-value=3.8e-05 Score=90.41 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=121.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh--------hhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHhHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIY--------TDAF-NIAFRIPNLLRRLFAEGAFSQAFVPILTEYK 72 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~--------~da~-~~a~~i~~~l~~i~~~ggls~a~ip~is~~~ 72 (896)
++++.+.+.++.+++..+...++.+++.+.+++... .+.| +++.++..+.. .+. .+++.+..|.++++.
T Consensus 226 ~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~-~~l~~~~~p~~s~~~ 303 (488)
T TIGR02900 226 DLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VIT-SSLSTALVPDISEAM 303 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHH-HHHHHHHHHHHHHHH
Confidence 355667777888888888888888888887754211 1111 23344444443 222 469999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 73 NKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILN 152 (896)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~ 152 (896)
+++|+++.++.....+.+..++++.+++.++++++++..++.. +++ +..+++++++..++..+..+..++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~----~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 304 AKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG----RPD----AGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCc----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988752 233 57889999999999999999999999
Q ss_pred hhCcchhHhHHHHH
Q psy2376 153 IWSQFKIPAFTPIL 166 (896)
Q Consensus 153 ~~~~f~~~~i~~ii 166 (896)
+.++.+.++...++
T Consensus 376 ~~g~~~~~~~~~~~ 389 (488)
T TIGR02900 376 GLGKQKVALRNSLI 389 (488)
T ss_pred hcCcchHHHHHHHH
Confidence 99999988765544
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.45 E-value=1.1e-05 Score=78.38 Aligned_cols=97 Identities=24% Similarity=0.411 Sum_probs=82.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHH
Q psy2376 289 IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVA 368 (896)
Q Consensus 289 i~~~Gi~G~aia~~is~~i~~il~~~~l~r~~~~~~~~~~~~~i~k~lias~im~~v~~~i~~~l~~~~~~~~~~~~li~ 368 (896)
+|.||..|+++|+.+++++..++..+..+|..+.. .++.+.+.|+++++++|+++.+......+... +. +.++++.
T Consensus 50 i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 125 (146)
T PF14667_consen 50 IPRFGIYGAAIATAISEIVSFILNLWYVRKKIGIK--INWRRSLIKPILASIVMAIVLYILNSLLPNIF-PS-RLSSLLQ 125 (146)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hhhHHHH
Confidence 78999999999999999999999999999998753 55677899999999999999988887652110 01 3578899
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy2376 369 LLLILLFCGITYFLALRIMGF 389 (896)
Q Consensus 369 l~i~i~ig~ivY~~ll~ll~~ 389 (896)
+++.+.+|+++|+..++.+|+
T Consensus 126 l~~~~~i~~~~y~~~~~~~~~ 146 (146)
T PF14667_consen 126 LLIGIIIGGIVYLLLLLLLKV 146 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998874
No 42
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.28 E-value=1.5e-05 Score=89.11 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 214 PSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 214 P~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
|.++++++.++...+|+.+++.+|++++++++.+.++..+.. .+..+++++..|.++++++++|.+++++..+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~-~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~ 74 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLF-SILMGLGTATTALVAQAVGAGNYQRLGRQAQQ 74 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHH-HHHHHHHHhHHHHHHHHHCCCChHHHHHHHHH
Confidence 678899999999999999999999999999999999887766 67899999999999999999999999998877
No 43
>PRK15099 O-antigen translocase; Provisional
Probab=98.07 E-value=0.00039 Score=80.23 Aligned_cols=150 Identities=9% Similarity=0.035 Sum_probs=116.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++...+....++...+...+.+.++.+.+|++ ..++|+.+..+...+..+.. .+++.+..|.+++. +++++.+
T Consensus 216 ~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~-~vg~y~~a~~i~~~~~~~~~-~~~~~a~~P~~s~~---~~~~~~~ 290 (416)
T PRK15099 216 QLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWD-EVGIWQGVSSISDAYLQFIT-ASFSVYLLPTLSRL---TEKRDIT 290 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc---CChHHHH
Confidence 4677788888888888888888888888889985 67899999999875543444 46999999999984 5677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+.....+.....+++.+++++++++|+++.++.+ +.++.+.+++++++++.++...+.++...+-+.++.+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g------~~~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 291 REIVKALKFVLPAVAAASFTVWLLRDFAIWLLFS------NKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888889999999999998853 2234468889998888888877776655555555544433
Q ss_pred H
Q psy2376 162 F 162 (896)
Q Consensus 162 i 162 (896)
.
T Consensus 365 ~ 365 (416)
T PRK15099 365 L 365 (416)
T ss_pred H
Confidence 3
No 44
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.07 E-value=2.3e-05 Score=73.12 Aligned_cols=76 Identities=25% Similarity=0.259 Sum_probs=60.6
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
|..++|..+|.|.-+.+++++. ..+++|+|+||.+++.+++. ..+|+++++++..+..+.+ ..+++|.|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL---PDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC---TTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc---cCceeEEEE
Confidence 4689999999999999999986 57999999999999999763 3578999999987776433 335799999
Q ss_pred EecccC
Q psy2376 482 FDLGIS 487 (896)
Q Consensus 482 ~dlG~s 487 (896)
.|-=..
T Consensus 76 ~npP~~ 81 (117)
T PF13659_consen 76 TNPPYG 81 (117)
T ss_dssp E--STT
T ss_pred ECCCCc
Confidence 987664
No 45
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.07 E-value=0.00059 Score=80.24 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=132.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
++++.+.++...+++..+.+.++..++.+.+|++ ..|.|+.+..+......+ . ..++.++.|.+++...++++++.+
T Consensus 214 ~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~a~~i~~~~~~~-~-~~l~~~l~P~~s~~~~~~~~~~~~ 290 (480)
T COG2244 214 ELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPA-QVGIYSAAQRLVSLLLIV-A-SALNRVLFPALSRAYAEGDRKALK 290 (480)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HheecccccHHHHHHHHH-H-HHHHHHHHHHHHHHHHcCcHHHHH
Confidence 4678889999999999999999999999999985 678999777776666644 3 369999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHh
Q psy2376 82 KLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPA 161 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~ 161 (896)
+....++.+..++++...+.+.++++++..++.+. + +..+...++++++..++..+.......+++.++.+...
T Consensus 291 ~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~----~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 291 KLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGE----K--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCC----c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999999999988876431 1 12268889999999999999999999999999998877
Q ss_pred HHHH
Q psy2376 162 FTPI 165 (896)
Q Consensus 162 i~~i 165 (896)
....
T Consensus 365 ~~~~ 368 (480)
T COG2244 365 LISL 368 (480)
T ss_pred HHHH
Confidence 6655
No 46
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.93 E-value=0.00023 Score=76.78 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=61.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|++.|.||.|..+++..++.++|+|+|++++.++.+++. . -+++++++.+...+... .+++|.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-----~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA-----VPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-----ccCCCEEE
Confidence 589999999999999999999998778999999999999888653 1 14578888776554332 12489999
Q ss_pred EecccC
Q psy2376 482 FDLGIS 487 (896)
Q Consensus 482 ~dlG~s 487 (896)
.|-=+|
T Consensus 146 ~D~Pcs 151 (264)
T TIGR00446 146 LDAPCS 151 (264)
T ss_pred EcCCCC
Confidence 887665
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.91 E-value=0.0002 Score=82.58 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=65.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
++..++|++.|.||-|..+++..+++++|+|+|+++..++.+++.. -+++++++.+..++++.+++ ++|.|+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~----~fD~Vl 312 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD----TFDRIL 312 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc----cCCEEE
Confidence 5889999999999999999999988899999999999999987541 13578888887776654433 589999
Q ss_pred EecccCcc
Q psy2376 482 FDLGISSN 489 (896)
Q Consensus 482 ~dlG~ss~ 489 (896)
.|-=+|+.
T Consensus 313 ~DaPCsg~ 320 (431)
T PRK14903 313 VDAPCTSL 320 (431)
T ss_pred ECCCCCCC
Confidence 99888754
No 48
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.91 E-value=4e-05 Score=80.79 Aligned_cols=90 Identities=14% Similarity=0.319 Sum_probs=57.8
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhc
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTE 464 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~ 464 (896)
..+.+.+++.+..+ ++..++|..+|.|-=|..++++.+++++|+|+|..+..++.|+++. ..++++++++-++
T Consensus 33 ~~wr~~~~~~~~~~---~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~ 109 (233)
T PF01209_consen 33 RRWRRKLIKLLGLR---PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAED 109 (233)
T ss_dssp ----SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB
T ss_pred HHHHHHHHhccCCC---CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH
Confidence 34556677766664 4899999999999999999999988999999999999999998642 3489999999988
Q ss_pred HHHHHHhcCCCcccEEEEeccc
Q psy2376 465 LDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 465 ~~~~l~~~~~~~~d~il~dlG~ 486 (896)
++ +++ ..+|.|..=+|+
T Consensus 110 lp--~~d---~sfD~v~~~fgl 126 (233)
T PF01209_consen 110 LP--FPD---NSFDAVTCSFGL 126 (233)
T ss_dssp ----S-T---T-EEEEEEES-G
T ss_pred hc--CCC---CceeEEEHHhhH
Confidence 86 232 268888776554
No 49
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.78 E-value=0.00011 Score=73.64 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=88.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
++.++|...|.|--+..++++. |+.+|+++|++++|++.+++. .++ +++++.+..+ .....++|.|+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~------~~~~~~fD~Iv 103 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFE------ALPDGKFDLIV 103 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTT------TCCTTCEEEEE
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccc------cccccceeEEE
Confidence 7789999999999999999987 577899999999999999763 223 8888766422 11123689999
Q ss_pred EecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCCcc
Q psy2376 482 FDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITR 561 (896)
Q Consensus 482 ~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~~~~~~~ 561 (896)
.|-=
T Consensus 104 ~NPP---------------------------------------------------------------------------- 107 (170)
T PF05175_consen 104 SNPP---------------------------------------------------------------------------- 107 (170)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred Eccc----------------------------------------------------------------------------
Confidence 8854
Q ss_pred hHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEE-EEeecchhHHHHHHHHhh
Q psy2376 562 TKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIV-VISFHSLEDRIVKNFINF 637 (896)
Q Consensus 562 t~~l~~~~~~~~~~~~~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~-visfhsledr~vk~~~~~ 637 (896)
+ .. .. -+.++-++++++++.++|+|||+++ |++-|.-..+++|+.|..
T Consensus 108 -----------~--~~-~~--------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~~ 156 (170)
T PF05175_consen 108 -----------F--HA-GG--------------DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFGD 156 (170)
T ss_dssp -----------S--BT-TS--------------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS-
T ss_pred -----------h--hc-cc--------------ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcCC
Confidence 1 00 00 1235667888999999999999995 777888888888888875
No 50
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.75 E-value=0.00034 Score=81.32 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=62.5
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc---C-CCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT---D-SRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|++.|.|+.|..++++.+++++|+|+|+++++++.+++.. + +++++++++..++.+.+. .++|.|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~----~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA----EKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc----ccCCEEE
Confidence 4889999999999999999999877899999999999999887531 1 348888888776543332 3589999
Q ss_pred EecccC
Q psy2376 482 FDLGIS 487 (896)
Q Consensus 482 ~dlG~s 487 (896)
.|--+|
T Consensus 326 ~D~Pcs 331 (444)
T PRK14902 326 VDAPCS 331 (444)
T ss_pred EcCCCC
Confidence 986554
No 51
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.75 E-value=0.0087 Score=70.89 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy2376 206 RRILKKMGPSVFSVFAAQISLMLNTNIASQ--M-REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNT 279 (896)
Q Consensus 206 k~ll~~glP~~l~~~~~~i~~~vd~~i~s~--l-g~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~ 279 (896)
+++++.....+..+++-++.+--|+++++. + ....-|.|..++++-++..=++-.++-......+|+....++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~ 329 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS 329 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence 678888888888888889998899998877 4 4567788888888888876667788999888899988766543
No 52
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.75 E-value=4.3e-05 Score=75.12 Aligned_cols=127 Identities=24% Similarity=0.351 Sum_probs=75.6
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c--CCCeEEEccChhcHHHHHHhcCCCc-ccEEE
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T--DSRFSIIHNCFTELDIILKKYNIKK-IDGIL 481 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~-~d~il 481 (896)
.+++|+|.|.||.|..+++.+ .+|+|+|+||.-++.++.. + ++|+.++++++.++.+-++. .. +|.|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence 378999999999999999986 3899999999999999753 3 68999999999775433322 22 58887
Q ss_pred EecccCccccCCCCCCccCCCCCCccc--cCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCC
Q psy2376 482 FDLGISSNQINNELRGFSFLLDGPLDM--RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPI 559 (896)
Q Consensus 482 ~dlG~ss~q~~~~~rgfs~~~~~~ldm--rm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~~~~~ 559 (896)
+| -|=-|-||++....|+ .|.| .+ +.++++. +++++.-|+-.=.+.
T Consensus 75 lS---------PPWGGp~Y~~~~~fdL~~~~~p---~~------------~~~l~~~------~~~~t~nv~l~LPRn-- 122 (163)
T PF09445_consen 75 LS---------PPWGGPSYSKKDVFDLEKSMQP---FN------------LEDLLKA------ARKITPNVVLFLPRN-- 122 (163)
T ss_dssp E------------BSSGGGGGSSSB-TTTSSSS-----------------HHHHHHH------HHHH-S-EEEEEETT--
T ss_pred EC---------CCCCCccccccCccCHHHccCC---CC------------HHHHHHH------HHhhCCCEEEEeCCC--
Confidence 53 5556788988778888 4432 23 3333333 566665555332221
Q ss_pred cchHHHHHHHHhh
Q psy2376 560 TRTKQLVEIILKS 572 (896)
Q Consensus 560 ~~t~~l~~~~~~~ 572 (896)
+...||+++..+.
T Consensus 123 ~dl~ql~~~~~~l 135 (163)
T PF09445_consen 123 SDLNQLSQLTREL 135 (163)
T ss_dssp B-HHHHHHT----
T ss_pred CCHHHHHHHhccc
Confidence 3556666665443
No 53
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.56 E-value=0.0007 Score=70.75 Aligned_cols=83 Identities=13% Similarity=0.272 Sum_probs=61.4
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHHHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDIILK 470 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 470 (896)
+++++.+... ++..++|...|.|..+..++++.++.++++|+|+++.+++.+++.. .+++++++.+..+..
T Consensus 29 ~~~~~~~~~~---~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 29 RRAVKLIGVF---KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred HHHHHHhccC---CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 3444444443 4789999999999999999999865589999999999999887643 357888888776543
Q ss_pred hcCCCcccEEEEe
Q psy2376 471 KYNIKKIDGILFD 483 (896)
Q Consensus 471 ~~~~~~~d~il~d 483 (896)
...+++|.|+..
T Consensus 102 -~~~~~~D~i~~~ 113 (223)
T TIGR01934 102 -FEDNSFDAVTIA 113 (223)
T ss_pred -CCCCcEEEEEEe
Confidence 112357777654
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.44 E-value=0.0019 Score=70.48 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=55.6
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+..++|...|.|..+..++++. ++.+++|+|++++|++.|++. ..+|+++++++..+ .+++ .++|.|+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~---~~~~---~~fD~Iv 194 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA---ALPG---RKYDLIV 194 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh---ccCC---CCccEEE
Confidence 5689999999999999999987 567999999999999999763 24678888887522 1211 2588888
Q ss_pred Ee
Q psy2376 482 FD 483 (896)
Q Consensus 482 ~d 483 (896)
.|
T Consensus 195 ~N 196 (284)
T TIGR03533 195 SN 196 (284)
T ss_pred EC
Confidence 88
No 55
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.44 E-value=0.00083 Score=68.31 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=55.5
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
++.++|.-+|.|..+..++++. ++++|+|+|.++++++.+++. .-+++++++++..++.. .+++|.|+.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------~~~fDlV~~ 118 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------EEKFDVVTS 118 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC------CCCccEEEE
Confidence 6789999999999999999876 578999999999999988753 12348899988876542 126888885
No 56
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.42 E-value=0.00041 Score=64.03 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=59.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
|++.++|.-+|.|..+..++++. +..+|+|+|.+|++++.+++. ..+|++++++++ .... ...+++|.|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~----~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP----DFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT----TTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc----ccCCCCCEE
Confidence 47889999999999999999976 578999999999999999765 368999999998 2211 122369999
Q ss_pred EEec
Q psy2376 481 LFDL 484 (896)
Q Consensus 481 l~dl 484 (896)
+.+.
T Consensus 75 ~~~~ 78 (112)
T PF12847_consen 75 ICSG 78 (112)
T ss_dssp EECS
T ss_pred EECC
Confidence 9887
No 57
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.41 E-value=0.002 Score=74.66 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=62.0
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+|+.++|++.|.||-|..+++..+++++|+|+|++++.++.+++. . -+++++++.+..++.+..... ..++|.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~-~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW-RGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc-cccCCEEE
Confidence 589999999999999999999987789999999999999888653 1 145888888776654321100 12578888
Q ss_pred EecccCc
Q psy2376 482 FDLGISS 488 (896)
Q Consensus 482 ~dlG~ss 488 (896)
.|-=+|.
T Consensus 331 ~DaPCSg 337 (434)
T PRK14901 331 LDAPCSG 337 (434)
T ss_pred EeCCCCc
Confidence 8766554
No 58
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.38 E-value=0.00017 Score=71.22 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhh
Q psy2376 214 PSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 288 (896)
Q Consensus 214 P~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~ 288 (896)
|.++++++..+...+++.+++.+|+.++++++.+.++.++.. .+..++++++.|.+|+++|++|++++++..++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~-~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~ 74 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILF-MLIFGLATALQILISQNIGAGDYKRAKKVVRQ 74 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh-hhcccccccccceeeccccccccccccccccc
Confidence 889999999999999999999999999999999999999988 68899999999999999999999999997776
No 59
>KOG2864|consensus
Probab=97.38 E-value=0.4 Score=54.02 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Q psy2376 207 RILKKMGPSVFSVFAAQISLMLNTNIASQM---REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYS 283 (896)
Q Consensus 207 ~ll~~glP~~l~~~~~~i~~~vd~~i~s~l---g~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~ 283 (896)
+..+.....+..+..-++.+=-|+++++.. .-++=|.|..+++.-++..-++-.++--...-.+++....+++|+.+
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 344444444455555666666677766643 23445667777776666665666788888888999999999988888
Q ss_pred HHHhh
Q psy2376 284 AILDW 288 (896)
Q Consensus 284 ~~~~~ 288 (896)
+....
T Consensus 320 ~a~~v 324 (530)
T KOG2864|consen 320 KAVDV 324 (530)
T ss_pred HHHHH
Confidence 87665
No 60
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.24 E-value=0.0041 Score=68.53 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=55.3
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
..++|...|.|..+..++++. |+.+|+|+|+++.|++.|++. ..+|++++++++.+ .+.. .++|.|+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~~---~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALPG---RRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCCC---CCccEEEE
Confidence 689999999999999999987 578999999999999998764 24679999888632 1211 25888888
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
|
T Consensus 208 N 208 (307)
T PRK11805 208 N 208 (307)
T ss_pred C
Confidence 7
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.10 E-value=0.0063 Score=61.70 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=54.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
++.++|.-+|.|..+..+++.. ++++|+|+|.++++++.+++. . -+++++++++.+++. . .+++|.|+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----~--~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----H--EEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----c--cCCccEEEe
Confidence 6799999999999999988765 678999999999998877643 1 246899999877642 1 136898887
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
+
T Consensus 116 ~ 116 (181)
T TIGR00138 116 R 116 (181)
T ss_pred h
Confidence 6
No 62
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.09 E-value=0.0014 Score=64.43 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=61.5
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+++..++|.-+|.|..+..++++.++.++++|+|+++++++.++++ .-+++++++++..++++.++ .++|.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~----~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE----EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS----TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC----CCeeEE
Confidence 3578999999999999999998777889999999999999999864 22489999999988653211 379999
Q ss_pred EEe
Q psy2376 481 LFD 483 (896)
Q Consensus 481 l~d 483 (896)
+.+
T Consensus 78 ~~~ 80 (152)
T PF13847_consen 78 ISN 80 (152)
T ss_dssp EEE
T ss_pred EEc
Confidence 988
No 63
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.07 E-value=0.0022 Score=66.12 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=59.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c--CCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T--DSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+++.++|...|.|..+..+++..++.++|+|+|+++++++.+++. . .+++++++++..+. +++.. +++|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---l~~~~-~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---LFTIN-EKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---HhhcC-CCCCEE
Confidence 589999999999999999999887778999999999999988753 2 46789988877553 32221 268998
Q ss_pred EEec
Q psy2376 481 LFDL 484 (896)
Q Consensus 481 l~dl 484 (896)
+.+.
T Consensus 116 ~~~~ 119 (198)
T PRK00377 116 FIGG 119 (198)
T ss_pred EECC
Confidence 8753
No 64
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.06 E-value=0.0022 Score=67.69 Aligned_cols=87 Identities=18% Similarity=0.378 Sum_probs=67.7
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELD 466 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~ 466 (896)
..+++++.+..+ +++.++|..+|.|..+..+.+..+++++|+|+|+++++++.+++.. -+++++++++..+++
T Consensus 33 ~~~~~l~~l~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 33 WRKDTMKRMNVQ---AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 345666666664 4889999999999999999999888899999999999999887542 257888888876543
Q ss_pred HHHHhcCCCcccEEEEecc
Q psy2376 467 IILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG 485 (896)
....++|.|+.+++
T Consensus 110 -----~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 110 -----FDDNSFDYVTIGFG 123 (231)
T ss_pred -----CCCCCccEEEEecc
Confidence 11236899987654
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.01 E-value=0.0018 Score=67.09 Aligned_cols=87 Identities=10% Similarity=0.076 Sum_probs=66.6
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELD 466 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~ 466 (896)
...+++.+.++ +++.++|.-.|.|..|..+++..++.++|+|+|+++++++.+++. ..+++++++++..+..
T Consensus 61 ~~~~~~~l~~~---~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 61 VAMMCELIEPR---PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHhcCCC---CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 34555666654 488999999999999999999987778999999999999988753 2356899988875421
Q ss_pred HHHHhcCCCcccEEEEeccc
Q psy2376 467 IILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG~ 486 (896)
.. ..++|.|+.+...
T Consensus 138 ---~~--~~~fD~Ii~~~~~ 152 (205)
T PRK13944 138 ---EK--HAPFDAIIVTAAA 152 (205)
T ss_pred ---cc--CCCccEEEEccCc
Confidence 11 2369999988653
No 66
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.99 E-value=0.002 Score=67.32 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELD 466 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~ 466 (896)
+...+++.+..+ ++..++|...|.|..|..+++..+++++|+|+|+|+++++.|++.. -+++++++++..+..
T Consensus 65 ~~~~~~~~l~~~---~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELK---PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCC---CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 345566666654 4899999999999999999999877889999999999999997642 257889888765421
Q ss_pred HHHHhcCCCcccEEEEec
Q psy2376 467 IILKKYNIKKIDGILFDL 484 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dl 484 (896)
.. ..++|.|++|-
T Consensus 142 ---~~--~~~fD~Ii~~~ 154 (215)
T TIGR00080 142 ---EP--LAPYDRIYVTA 154 (215)
T ss_pred ---cc--cCCCCEEEEcC
Confidence 11 13689999874
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=96.94 E-value=0.011 Score=59.97 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=50.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCC-eEEEccChhcHHHHHHhcCCCcccE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSR-FSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
+++.++|..+|.|..+..++++ ..+++|+|+++++++.+++.. .++ +.+++.+..+ . +.+ .++|.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~-~~~---~~~d~ 93 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--P-FRG---DKFDV 93 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--c-ccc---cCceE
Confidence 3789999999999999999997 368999999999999886531 222 6666655422 1 111 14777
Q ss_pred EEEecc
Q psy2376 480 ILFDLG 485 (896)
Q Consensus 480 il~dlG 485 (896)
|+.|..
T Consensus 94 vi~n~p 99 (188)
T PRK14968 94 ILFNPP 99 (188)
T ss_pred EEECCC
Confidence 776643
No 68
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.94 E-value=0.002 Score=67.56 Aligned_cols=91 Identities=14% Similarity=0.301 Sum_probs=74.3
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccC----CCeEEEccChhc
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITD----SRFSIIHNCFTE 464 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~----~~~~~~~~~~~~ 464 (896)
..+.++.++.+..+ ||..++|+.+|.|--+..+.+..+ .++|+|+|+.+..++.++++.. ..+++++++.++
T Consensus 37 ~~Wr~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 37 RLWRRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 34667788877765 499999999999999999999997 8999999999999999987521 228899999988
Q ss_pred HHHHHHhcCCCcccEEEEecccCc
Q psy2376 465 LDIILKKYNIKKIDGILFDLGISS 488 (896)
Q Consensus 465 ~~~~l~~~~~~~~d~il~dlG~ss 488 (896)
|+ +++. .+|.+...+|.=-
T Consensus 113 LP--f~D~---sFD~vt~~fglrn 131 (238)
T COG2226 113 LP--FPDN---SFDAVTISFGLRN 131 (238)
T ss_pred CC--CCCC---ccCEEEeeehhhc
Confidence 87 4443 5888888877643
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.92 E-value=0.0099 Score=67.23 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=54.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
++.++|...|.|-.+..++++. ++++++|+|++++|++.|++. .+.|++++++++.+.. +.. ..++|.|+.|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~~--~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MPS--EGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--ccc--CCCccEEEEC
Confidence 5689999999999999999886 568999999999999999764 3457888887763321 111 1247777775
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.90 E-value=0.0035 Score=58.68 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=60.0
Q ss_pred HhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHH
Q psy2376 395 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILK 470 (896)
Q Consensus 395 ~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~ 470 (896)
+++.+... ++..++|.-.|.|.++..++++.+ .++++|+|.++.+++.+++. . .++++++.++..+......
T Consensus 11 ~~~~~~~~---~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 11 TLSKLRLR---PGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHcCCC---CCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 44444443 367999999999999999999985 48999999999999998753 1 2468888776543222221
Q ss_pred hcCCCcccEEEEec
Q psy2376 471 KYNIKKIDGILFDL 484 (896)
Q Consensus 471 ~~~~~~~d~il~dl 484 (896)
+++|.|+.+.
T Consensus 87 ----~~~D~v~~~~ 96 (124)
T TIGR02469 87 ----PEPDRVFIGG 96 (124)
T ss_pred ----CCCCEEEECC
Confidence 2689998854
No 71
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.83 E-value=0.0047 Score=61.65 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=63.1
Q ss_pred HhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHH
Q psy2376 395 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILK 470 (896)
Q Consensus 395 ~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~ 470 (896)
++..|+++ |+++++|.-.|.|.=|...+ +.+|.+|+||+|+|++|++.+++. --++++++.+.= ++.|+
T Consensus 26 ~ls~L~~~---~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A---p~~L~ 98 (187)
T COG2242 26 TLSKLRPR---PGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA---PEALP 98 (187)
T ss_pred HHHhhCCC---CCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc---hHhhc
Confidence 44455664 59999999999999999999 667899999999999999988653 247788888764 44454
Q ss_pred hcCCCcccEEEEecc
Q psy2376 471 KYNIKKIDGILFDLG 485 (896)
Q Consensus 471 ~~~~~~~d~il~dlG 485 (896)
+. +++|.|+..=|
T Consensus 99 ~~--~~~daiFIGGg 111 (187)
T COG2242 99 DL--PSPDAIFIGGG 111 (187)
T ss_pred CC--CCCCEEEECCC
Confidence 32 35788887544
No 72
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.83 E-value=0.0075 Score=67.31 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=52.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|..+|.|+.+...... ..+++|+|+|+++++.+++. . -+.+.+++.++.+++.- -.++|.|+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~-----~~~~D~Iv 253 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS-----SESVDAIA 253 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc-----cCCCCEEE
Confidence 5889999999999988775442 46899999999999887653 1 12377888888766421 12689999
Q ss_pred Ee
Q psy2376 482 FD 483 (896)
Q Consensus 482 ~d 483 (896)
.|
T Consensus 254 ~d 255 (329)
T TIGR01177 254 TD 255 (329)
T ss_pred EC
Confidence 98
No 73
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.83 E-value=0.0042 Score=66.86 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=63.5
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-------CCCeEEEccChhcHHHHHHhcCCCccc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-------DSRFSIIHNCFTELDIILKKYNIKKID 478 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~d 478 (896)
++..++|..+|.|..+..+.++.+++++|+|+|.++++++.|+++. .+++++++++..+++ +.-..+|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-----FDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-----CCCCCEe
Confidence 4789999999999999999998878889999999999999986531 347889998887664 1123699
Q ss_pred EEEEecccCc
Q psy2376 479 GILFDLGISS 488 (896)
Q Consensus 479 ~il~dlG~ss 488 (896)
.|+..++...
T Consensus 148 ~V~~~~~l~~ 157 (261)
T PLN02233 148 AITMGYGLRN 157 (261)
T ss_pred EEEEeccccc
Confidence 9998888654
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.80 E-value=0.005 Score=63.94 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=56.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhc---HHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE---LDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~d~il~ 482 (896)
+++.++|...|.|+.|..++++.++.++|+|+|+++. +. ..+++++++++.+ ++++++..+.+++|.|+-
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----~~--~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----DP--IVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----cC--CCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4789999999999999999999988889999999982 11 1358999999887 455555555556777776
Q ss_pred ec
Q psy2376 483 DL 484 (896)
Q Consensus 483 dl 484 (896)
|.
T Consensus 124 ~~ 125 (209)
T PRK11188 124 DM 125 (209)
T ss_pred CC
Confidence 54
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.80 E-value=0.021 Score=60.85 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+..++|..+|.|..+..+++.. ++.+++|+|+++.+++.+++.. -++++++++++.+. +. -.++|.|+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~---~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LP---GGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---Cc---CCceeEEEE
Confidence 5689999999999999999987 4679999999999999987531 23678888776431 11 125777776
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
|
T Consensus 161 n 161 (251)
T TIGR03534 161 N 161 (251)
T ss_pred C
Confidence 4
No 76
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.80 E-value=0.0037 Score=56.70 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=52.5
Q ss_pred EEEEccCCChhHHHHHHHc--CCCcEEEEEeCCHHHHHHhhccc---CCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 410 YIDATFGQGGHSCKILERL--GKKGRLIAIDKDTESVSLGNKIT---DSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 410 ~vD~T~G~Gghs~~ll~~~--~~~~~~~~~D~d~~a~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
++|..+|.|.++..+++.+ ++..+++|+|+++++++.+++.. .-+++++++++.+++.. . .++|.|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~---~--~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS---D--GKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH---S--SSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc---C--CCeeEEEE
Confidence 4799999999999999998 33479999999999999998753 24789999999997631 1 26899888
No 77
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.74 E-value=0.0047 Score=63.86 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=66.3
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccCh-hc
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCF-TE 464 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~-~~ 464 (896)
.|..+..+.+.. +++.++|.-+|.|.++..++++. |+.+++|+|.++++++.+++.. -+++++++++. ++
T Consensus 28 ~~~~~~~~~~~~----~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~ 102 (202)
T PRK00121 28 PAPLDWAELFGN----DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV 102 (202)
T ss_pred CCCCCHHHHcCC----CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH
Confidence 344445555444 37899999999999999999987 5679999999999999987531 25799999998 77
Q ss_pred HHHHHHhcCCCcccEEEEec
Q psy2376 465 LDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 465 ~~~~l~~~~~~~~d~il~dl 484 (896)
+++.+.+ ..+|.|++++
T Consensus 103 l~~~~~~---~~~D~V~~~~ 119 (202)
T PRK00121 103 LLDMFPD---GSLDRIYLNF 119 (202)
T ss_pred HHHHcCc---cccceEEEEC
Confidence 7655432 2589888764
No 78
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.71 E-value=0.017 Score=51.19 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=57.2
Q ss_pred EEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHHhcCCCcccEEEEecc
Q psy2376 410 YIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 410 ~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG 485 (896)
++|...|.|+.+..+++ .+..+++++|.++++++.+++. ...+.++++.++.+... ....++|.++.|..
T Consensus 2 ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~~ 75 (107)
T cd02440 2 VLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDPP 75 (107)
T ss_pred eEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEccc
Confidence 68999999999999998 3467999999999999888721 34678888888876543 12346899998887
Q ss_pred cCcc
Q psy2376 486 ISSN 489 (896)
Q Consensus 486 ~ss~ 489 (896)
.+..
T Consensus 76 ~~~~ 79 (107)
T cd02440 76 LHHL 79 (107)
T ss_pred eeeh
Confidence 6654
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.70 E-value=0.007 Score=63.06 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=67.4
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTEL 465 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~ 465 (896)
.+...+++.+..+ ++..++|...|.|..|..+.+..+++++|+|+|+|++.++.+++.. .+++++++++..+.
T Consensus 63 ~~~~~~~~~l~~~---~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLK---EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCC---CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 3456666667664 4899999999999999999999888889999999999999997642 25788998886543
Q ss_pred HHHHHhcCCCcccEEEEecc
Q psy2376 466 DIILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 466 ~~~l~~~~~~~~d~il~dlG 485 (896)
. . ...++|.|+.+-.
T Consensus 140 ~---~--~~~~fD~I~~~~~ 154 (212)
T PRK13942 140 Y---E--ENAPYDRIYVTAA 154 (212)
T ss_pred C---C--cCCCcCEEEECCC
Confidence 1 1 1236899987643
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.52 E-value=0.034 Score=60.79 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=36.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+++.++|.-+|.|..+.++++. + ..+|+|+|+|+.+++.|++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKN 201 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHH
Confidence 3789999999999999887764 3 35999999999999999764
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.51 E-value=0.028 Score=60.17 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=35.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+++.++|.-+|.|..+..+.+ .+. .+|+|+|+|+.+++.|++.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~-~g~-~~v~giDis~~~l~~A~~n 161 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAK-LGA-KKVLAVDIDPQAVEAAREN 161 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHH-cCC-CeEEEEECCHHHHHHHHHH
Confidence 378999999999998887655 444 4799999999999999764
No 82
>PTZ00146 fibrillarin; Provisional
Probab=96.42 E-value=0.0094 Score=64.28 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=57.3
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHH----HHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESV----SLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
|+..++|+-.|.|.-|..+++.++++++|||+|.++.+. +.++++ .++.++..+..+-.+|-.. .+.+|.|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~--~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRML--VPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcc--cCCCCEEE
Confidence 588999999999999999999999899999999998754 444332 5788888776542222211 13699999
Q ss_pred Eec
Q psy2376 482 FDL 484 (896)
Q Consensus 482 ~dl 484 (896)
.|.
T Consensus 208 ~Dv 210 (293)
T PTZ00146 208 ADV 210 (293)
T ss_pred EeC
Confidence 998
No 83
>KOG2730|consensus
Probab=96.41 E-value=0.0053 Score=62.06 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=51.6
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHh
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKK 471 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 471 (896)
..++||+-+|.||-|.....+. ..||++|+||.=|+.|++. ..+|++|++++|-.+.+-|+-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~ 161 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA 161 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh
Confidence 3588999999999998888876 3799999999999999864 368999999999777766643
No 84
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.40 E-value=0.045 Score=55.30 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=49.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
++.++|...|.|..+..+.++. + +|+|+|.++++++.+++. .+.++++++++..+.. . +++|.|+.|
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----~--~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-----R--GKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----C--CcccEEEEC
Confidence 5689999999999999999875 3 899999999999998764 2234666666643311 1 256777766
Q ss_pred c
Q psy2376 484 L 484 (896)
Q Consensus 484 l 484 (896)
.
T Consensus 90 ~ 90 (179)
T TIGR00537 90 P 90 (179)
T ss_pred C
Confidence 4
No 85
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.38 E-value=0.0096 Score=63.04 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=66.2
Q ss_pred HhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhc--HHH
Q psy2376 395 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTE--LDI 467 (896)
Q Consensus 395 ~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~--~~~ 467 (896)
++..+..+ ||+.++++=-|.|.=|.+|++.++|+|+|+.+|..++-.+.|++. ..+++++.|.+..+ +++
T Consensus 32 I~~~l~i~---pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 32 ILMRLDIR---PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHcCCC---CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 44455554 599999999999999999999999999999999999999999763 45789998888642 211
Q ss_pred HHHhcCCCcccEEEEecccCccccCCC
Q psy2376 468 ILKKYNIKKIDGILFDLGISSNQINNE 494 (896)
Q Consensus 468 ~l~~~~~~~~d~il~dlG~ss~q~~~~ 494 (896)
-++ ..+|+|++||.=.-.-++..
T Consensus 109 ~~~----~~~DavfLDlp~Pw~~i~~~ 131 (247)
T PF08704_consen 109 ELE----SDFDAVFLDLPDPWEAIPHA 131 (247)
T ss_dssp T-T----TSEEEEEEESSSGGGGHHHH
T ss_pred ccc----CcccEEEEeCCCHHHHHHHH
Confidence 111 36899999987655444443
No 86
>KOG1347|consensus
Probab=96.36 E-value=0.044 Score=64.05 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy2376 202 NIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEE 281 (896)
Q Consensus 202 ~~~lk~ll~~glP~~l~~~~~~i~~~vd~~i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~ 281 (896)
..+.|++++++.|..+..+.......+++.+.+.+|+..+++.+.++...+...--+..++++++-|..++.+|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 36789999999999999999999999999999999999999998888777663223567899999999999999999998
Q ss_pred HHHHHhh-------------------------------------------------------------------------
Q psy2376 282 YSAILDW------------------------------------------------------------------------- 288 (896)
Q Consensus 282 ~~~~~~~------------------------------------------------------------------------- 288 (896)
+.....+
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 8888777
Q ss_pred ----------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----c--ccCchhhHHHHHHHHHHHHHHHHHH
Q psy2376 289 ----------------IPIFAHSGLALSIGLGACLHASFLYWYLRHKR----I--YIPCAGWGVFFIRLVIALLLLVIVA 346 (896)
Q Consensus 289 ----------------i~~~Gi~G~aia~~is~~i~~il~~~~l~r~~----~--~~~~~~~~~~i~k~lias~im~~v~ 346 (896)
.+.+|..|++++..+++++...+..++..-.- + +.....-++.+.+..+++.+|...=
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~miclE 263 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVMICLE 263 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchheeHHH
Confidence 45688999999999999998887776654321 1 0000222456788889999997653
Q ss_pred HH
Q psy2376 347 LW 348 (896)
Q Consensus 347 ~~ 348 (896)
|+
T Consensus 264 ~w 265 (473)
T KOG1347|consen 264 WW 265 (473)
T ss_pred HH
Confidence 33
No 87
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.25 E-value=0.018 Score=59.14 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=47.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTE 464 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~ 464 (896)
+++.++|...|.|.++..+++.. +.++|+|+|+|+++++.+++.. -+++++++++..+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 58899999999999999998775 5689999999999999987531 2468888877543
No 88
>PRK03612 spermidine synthase; Provisional
Probab=96.20 E-value=4.1 Score=48.51 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=56.7
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----------cCCCeEEEccChhcHHHHHHhcCCC
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----------TDSRFSIIHNCFTELDIILKKYNIK 475 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (896)
.+.++|.-.|.|+-+..++++ ++..++.++|+|++.++.+++. .++|+++++++-.+ ++++.. +
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~---~l~~~~-~ 372 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN---WLRKLA-E 372 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH---HHHhCC-C
Confidence 567899999999999999975 4447999999999999999872 13689998887543 343322 3
Q ss_pred cccEEEEec
Q psy2376 476 KIDGILFDL 484 (896)
Q Consensus 476 ~~d~il~dl 484 (896)
++|.|+.|+
T Consensus 373 ~fDvIi~D~ 381 (521)
T PRK03612 373 KFDVIIVDL 381 (521)
T ss_pred CCCEEEEeC
Confidence 799999994
No 89
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.15 E-value=0.018 Score=57.71 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=62.1
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~~l 469 (896)
.+.+++.+... +++.++|.-.|.|..|..++++ .++++|+|+|+.+++.+++.. .++++++++++.+++.
T Consensus 2 ~~~i~~~~~~~---~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~-- 73 (169)
T smart00650 2 IDKIVRAANLR---PGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL-- 73 (169)
T ss_pred HHHHHHhcCCC---CcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc--
Confidence 35566666654 4789999999999999999998 358999999999999997753 3589999999876531
Q ss_pred HhcCCCcccEEEEec
Q psy2376 470 KKYNIKKIDGILFDL 484 (896)
Q Consensus 470 ~~~~~~~~d~il~dl 484 (896)
++ ...|.|+.|+
T Consensus 74 ~~---~~~d~vi~n~ 85 (169)
T smart00650 74 PK---LQPYKVVGNL 85 (169)
T ss_pred cc---cCCCEEEECC
Confidence 11 1357776653
No 90
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.14 E-value=2.6 Score=45.75 Aligned_cols=252 Identities=14% Similarity=0.082 Sum_probs=140.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFG-ASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATK 81 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG-~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~ 81 (896)
+++..+++++.+++--+---+-+.-+||.-- +.+...+|++|+++.-++.+.... +..+.. .+..+.++ -+
T Consensus 13 li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~--~~~igl-----~~V~s~rs-rr 84 (345)
T PF07260_consen 13 LIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSM--FHHIGL-----VFVNSKRS-RR 84 (345)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhh--hHHHHH-----HHhcchhh-hH
Confidence 4566677777777766666666666666332 223345788888877776654432 332222 23322222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy2376 82 KLIDHVATVLIWFMFFICVFG-IIM----APIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQ 156 (896)
Q Consensus 82 ~~~~~~~~l~li~~lli~ll~-~l~----a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~ 156 (896)
+.+. ...+.+++++++. .+. ..++..-.. |. +|++-+.+...+.++.+.-++.++...+.|++-.+++
T Consensus 85 ~~vl----~~~vag~v~avi~~LIa~TpLG~~li~~lh-gV--s~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 85 KAVL----CMAVAGAVAAVIHLLIAWTPLGNYLINDLH-GV--SPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhCchHHHHHHHHh-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 2222 2223333333331 221 122222222 44 8999999999999999999999999999999987765
Q ss_pred chh---HhHHHHHHHHHH-----------------HH----------HHHHHHHHHHHHcCCcceeecCCCCCCCCHHHH
Q psy2376 157 FKI---PAFTPILLNISC-----------------GA----------LQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVR 206 (896)
Q Consensus 157 f~~---~~i~~ii~nii~-----------------gi----------~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~lk 206 (896)
... .+++.++.+++. ++ .+.+.+ -+++.. ....|.......-...-++
T Consensus 158 s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~L-Gy~~~i-~~~~p~~~~~~~~~~~tl~ 235 (345)
T PF07260_consen 158 SWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCL-GYYQSI-HDIIPQLSGLEKGDSATLQ 235 (345)
T ss_pred eeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHH-HHHHHH-hhhccccCCcccCCChhHH
Confidence 433 234444444432 10 111221 122111 1111211100012345789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 207 RILKKMGPSVFSVFAAQISLMLNTNIASQ-MR-----EGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKA 273 (896)
Q Consensus 207 ~ll~~glP~~l~~~~~~i~~~vd~~i~s~-lg-----~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~ 273 (896)
+++++.+|.+.......+...+-+.++++ ++ +.+++.+...+.+--+|++-++. ..+..|.+-++
T Consensus 236 ~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~--~r~~~paf~~~ 306 (345)
T PF07260_consen 236 RMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTE--LRAVYPAFDKN 306 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHh--HHhhCchhhcc
Confidence 99999999999988888888777777776 43 24677777777777777754322 34455665443
No 91
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.13 E-value=0.018 Score=58.65 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=56.7
Q ss_pred HhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHH
Q psy2376 395 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILK 470 (896)
Q Consensus 395 ~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~ 470 (896)
+++.+... +++.++|.-.|.|..+..++++. ++++|+|+|+++++++.+++.. -+++++++++.. ..++
T Consensus 23 ~~~~l~~~---~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~---~~~~ 95 (187)
T PRK08287 23 ALSKLELH---RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP---IELP 95 (187)
T ss_pred HHHhcCCC---CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch---hhcC
Confidence 33445443 47899999999999999999986 5789999999999999987531 246888877642 1121
Q ss_pred hcCCCcccEEEE
Q psy2376 471 KYNIKKIDGILF 482 (896)
Q Consensus 471 ~~~~~~~d~il~ 482 (896)
.++|.|+.
T Consensus 96 ----~~~D~v~~ 103 (187)
T PRK08287 96 ----GKADAIFI 103 (187)
T ss_pred ----cCCCEEEE
Confidence 25788775
No 92
>PRK08317 hypothetical protein; Provisional
Probab=96.11 E-value=0.022 Score=59.94 Aligned_cols=87 Identities=16% Similarity=0.305 Sum_probs=66.0
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l 469 (896)
++.++.+... ++..++|...|.|..+..+++++++.++++|+|.+++.++.+++. ...+++++..++.+.+ +
T Consensus 9 ~~~~~~~~~~---~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~ 83 (241)
T PRK08317 9 ARTFELLAVQ---PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--F 83 (241)
T ss_pred HHHHHHcCCC---CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--C
Confidence 4555666654 488999999999999999999987788999999999999988764 2456888887765543 1
Q ss_pred HhcCCCcccEEEEecccC
Q psy2376 470 KKYNIKKIDGILFDLGIS 487 (896)
Q Consensus 470 ~~~~~~~~d~il~dlG~s 487 (896)
. -..+|.|+.+....
T Consensus 84 ~---~~~~D~v~~~~~~~ 98 (241)
T PRK08317 84 P---DGSFDAVRSDRVLQ 98 (241)
T ss_pred C---CCCceEEEEechhh
Confidence 1 13688888775543
No 93
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.09 E-value=0.018 Score=61.75 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=61.9
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELD 466 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~ 466 (896)
++++++.+.. ++..++|..+|.|..+..++++ ..+|+|+|.++++++.|++. ..+++++++++..++.
T Consensus 34 ~~~~l~~l~~----~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 34 LDRLLAELPP----RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHHHHhcCC----CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 3556666553 3679999999999999999986 35899999999999999764 2367899999988775
Q ss_pred HHHHhcCCCcccEEEE
Q psy2376 467 IILKKYNIKKIDGILF 482 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~ 482 (896)
.... .++|.|+.
T Consensus 107 ~~~~----~~fD~V~~ 118 (255)
T PRK11036 107 QHLE----TPVDLILF 118 (255)
T ss_pred hhcC----CCCCEEEe
Confidence 4332 25888875
No 94
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.07 E-value=0.028 Score=59.48 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=62.2
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcH-HHHHHhcCCCcccEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTEL-DIILKKYNIKKIDGI 480 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~-~~~l~~~~~~~~d~i 480 (896)
.+.++|.-.|.|.-+..+++..+++++|+++|+|+++.+.|++. .++++++++++..+. +++.++..-+++|.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 57899999999999999999998899999999999999998764 357899999987654 333332222468999
Q ss_pred EEec
Q psy2376 481 LFDL 484 (896)
Q Consensus 481 l~dl 484 (896)
++|-
T Consensus 149 fiDa 152 (234)
T PLN02781 149 FVDA 152 (234)
T ss_pred EECC
Confidence 8874
No 95
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.06 E-value=0.024 Score=59.80 Aligned_cols=85 Identities=16% Similarity=0.403 Sum_probs=64.6
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDI 467 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~ 467 (896)
.++++.+... ++..++|..+|.|..+..++++.+++.+++++|.++.+++.+++.. .+++++++.++.+..
T Consensus 41 ~~~~~~~~~~---~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 116 (239)
T PRK00216 41 RKTIKWLGVR---PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP- 116 (239)
T ss_pred HHHHHHhCCC---CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-
Confidence 4455555554 4789999999999999999999865789999999999999987652 356888888886653
Q ss_pred HHHhcCCCcccEEEEecc
Q psy2376 468 ILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 468 ~l~~~~~~~~d~il~dlG 485 (896)
.....+|.|+.+.+
T Consensus 117 ----~~~~~~D~I~~~~~ 130 (239)
T PRK00216 117 ----FPDNSFDAVTIAFG 130 (239)
T ss_pred ----CCCCCccEEEEecc
Confidence 12236888876443
No 96
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.081 Score=59.51 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=61.4
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCC-cEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKK-GRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~-~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
+||..++|++.+-||=|..|++..... +.|+|+|+|+.=++.-++. . -.++..++..-+.+.+.....+ ++|-
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~--~fD~ 232 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE--KFDR 232 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC--cCcE
Confidence 469999999999999999999999663 4559999999877665432 2 2346777766666555443322 5899
Q ss_pred EEEecccCcc
Q psy2376 480 ILFDLGISSN 489 (896)
Q Consensus 480 il~dlG~ss~ 489 (896)
||+|==||+.
T Consensus 233 iLlDaPCSg~ 242 (355)
T COG0144 233 ILLDAPCSGT 242 (355)
T ss_pred EEECCCCCCC
Confidence 9999888763
No 97
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.05 E-value=0.014 Score=63.76 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=65.3
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChh
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFT 463 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~ 463 (896)
..+.+.+++..... +++.++|.-.|.|..|..++++. .+|+|+|+|+.+++.+++.+ .++++++++++-
T Consensus 22 ~~i~~~Iv~~~~~~---~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 22 PLVLDKIVEKAAIK---PTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred HHHHHHHHHhcCCC---CcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 34667777776664 48899999999999999999974 47999999999999987642 468999999985
Q ss_pred cHHHHHHhcCCCcccEEEEeccc
Q psy2376 464 ELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 464 ~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
+.+ .+.+|.++.|+-.
T Consensus 96 ~~~-------~~~~d~VvaNlPY 111 (294)
T PTZ00338 96 KTE-------FPYFDVCVANVPY 111 (294)
T ss_pred hhc-------ccccCEEEecCCc
Confidence 543 1245777766543
No 98
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.95 E-value=0.02 Score=63.36 Aligned_cols=88 Identities=10% Similarity=0.209 Sum_probs=66.2
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDII 468 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 468 (896)
..+++.+.++ +++.++|...|.|..+..+++..++.++|+|+|+++++++.|++. -.+++++++++..+.
T Consensus 70 a~ll~~L~i~---~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~--- 143 (322)
T PRK13943 70 ALFMEWVGLD---KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG--- 143 (322)
T ss_pred HHHHHhcCCC---CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc---
Confidence 4455555554 488999999999999999999987668999999999999888753 125688888765432
Q ss_pred HHhcCCCcccEEEEecccCc
Q psy2376 469 LKKYNIKKIDGILFDLGISS 488 (896)
Q Consensus 469 l~~~~~~~~d~il~dlG~ss 488 (896)
+.+. .++|.|+.+.|+..
T Consensus 144 ~~~~--~~fD~Ii~~~g~~~ 161 (322)
T PRK13943 144 VPEF--APYDVIFVTVGVDE 161 (322)
T ss_pred cccc--CCccEEEECCchHH
Confidence 2222 36899999988754
No 99
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.93 E-value=0.013 Score=61.51 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=61.0
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
.+.++|...|+|-=+.++.++.++ .++.|+|+|+++.+.|++- .++|++++++++.++.+..... ++|.|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~---~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA---SFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc---ccCEEE
Confidence 789999999999999999999854 8999999999999999763 5799999999998887765432 466666
Q ss_pred E
Q psy2376 482 F 482 (896)
Q Consensus 482 ~ 482 (896)
-
T Consensus 121 ~ 121 (248)
T COG4123 121 C 121 (248)
T ss_pred e
Confidence 4
No 100
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.91 E-value=0.028 Score=57.65 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=60.2
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+.+++|.-+|.|..+..++++. |+..++|+|+++++++.+++. .-+++++++++..++....... ..+|.|+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~--~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPD--GSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCC--CceeEEEE
Confidence 6799999999999999999997 578999999999999888653 1247999999987765432211 25899998
Q ss_pred ecc
Q psy2376 483 DLG 485 (896)
Q Consensus 483 dlG 485 (896)
|+.
T Consensus 94 ~~p 96 (194)
T TIGR00091 94 NFP 96 (194)
T ss_pred ECC
Confidence 853
No 101
>KOG2915|consensus
Probab=95.81 E-value=0.018 Score=60.14 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=69.9
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChh
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFT 463 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~ 463 (896)
.+-..-++.+|... ||.+++.+-=|.|+-|.+|++.++|.|+|+.||.+++--+.|.+- ..++++++|-+-.
T Consensus 91 t~Dia~I~~~L~i~---PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc 167 (314)
T KOG2915|consen 91 TPDIAMILSMLEIR---PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC 167 (314)
T ss_pred cccHHHHHHHhcCC---CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc
Confidence 34566677888886 599999999999999999999999999999999988776666542 4688888887665
Q ss_pred cHHHHHHhcCCCcccEEEEec
Q psy2376 464 ELDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 464 ~~~~~l~~~~~~~~d~il~dl 484 (896)
.---..++. ++|+|.+||
T Consensus 168 ~~GF~~ks~---~aDaVFLDl 185 (314)
T KOG2915|consen 168 GSGFLIKSL---KADAVFLDL 185 (314)
T ss_pred cCCcccccc---ccceEEEcC
Confidence 433223332 588888886
No 102
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.78 E-value=0.029 Score=59.56 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=57.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
++..++|.-+|.|..+..++++++ |+++++|+|.++++++.|++.. ..+++++++++.+++ .++.|.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-------IKNASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------CCCCCE
Confidence 477899999999999999999863 6789999999999999997642 357899998886553 224677
Q ss_pred EEEec
Q psy2376 480 ILFDL 484 (896)
Q Consensus 480 il~dl 484 (896)
++...
T Consensus 126 v~~~~ 130 (239)
T TIGR00740 126 VILNF 130 (239)
T ss_pred Eeeec
Confidence 76544
No 103
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.76 E-value=0.031 Score=64.66 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=63.6
Q ss_pred hhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcC
Q psy2376 397 NWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYN 473 (896)
Q Consensus 397 ~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~ 473 (896)
..+.++ +++.++|+..|.|+.|..++++.+ +++|+|+|+++++++.+++. .+-++++++++..++.....
T Consensus 238 ~~l~~~---~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~--- 310 (427)
T PRK10901 238 TLLAPQ---NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD--- 310 (427)
T ss_pred HHcCCC---CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc---
Confidence 344443 589999999999999999999984 48999999999999988754 22346777777665544322
Q ss_pred CCcccEEEEecccCc
Q psy2376 474 IKKIDGILFDLGISS 488 (896)
Q Consensus 474 ~~~~d~il~dlG~ss 488 (896)
..++|.|+.|-=+|.
T Consensus 311 ~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 311 GQPFDRILLDAPCSA 325 (427)
T ss_pred cCCCCEEEECCCCCc
Confidence 125899999877663
No 104
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.67 E-value=0.033 Score=61.79 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=55.1
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
++.++|+-+|.|..+..++++ ..+|+|+|.+++|++.|++.. -+++++++++..++.. .. ..++|.|++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~---~~-~~~~D~Vv~ 246 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT---AQ-GEVPDLVLV 246 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---hc-CCCCeEEEE
Confidence 679999999999999999984 358999999999999987531 2578999988766542 11 125899998
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
|
T Consensus 247 d 247 (315)
T PRK03522 247 N 247 (315)
T ss_pred C
Confidence 7
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.65 E-value=0.037 Score=62.30 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=65.7
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDI 467 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~ 467 (896)
.+++++.+... ++.+++|.-+|.|.++..++++. |+..++|+|+++.+++.+.+. --+++.+++++-..+.+
T Consensus 111 ~~~~~~~~~~~---~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 111 IDNFLDFISKN---QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE 186 (390)
T ss_pred HHHHHHHhcCC---CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh
Confidence 34566666653 36799999999999999999998 678999999999999888543 12569999988766655
Q ss_pred HHHhcCCCcccEEEEe
Q psy2376 468 ILKKYNIKKIDGILFD 483 (896)
Q Consensus 468 ~l~~~~~~~~d~il~d 483 (896)
.+++ ..+|.|..+
T Consensus 187 ~~~~---~s~D~I~ln 199 (390)
T PRK14121 187 LLPS---NSVEKIFVH 199 (390)
T ss_pred hCCC---CceeEEEEe
Confidence 5443 368999864
No 106
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.64 E-value=0.029 Score=60.32 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=64.2
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHH
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELD 466 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~ 466 (896)
....+++++.+... +++.++|.-.|.|..|..++++. .+|+|+|+|+.+++.+++.. .++++++++++.+++
T Consensus 15 ~~~~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 15 DRVVDRIVEYAEDT---DGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD 88 (258)
T ss_pred HHHHHHHHHhcCCC---CcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC
Confidence 34566777766654 48899999999999999999983 48999999999999987653 367999998886543
Q ss_pred HHHHhcCCCcccEEEEecc
Q psy2376 467 IILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG 485 (896)
.+.+|.|+.|+=
T Consensus 89 -------~~~~d~Vv~NlP 100 (258)
T PRK14896 89 -------LPEFNKVVSNLP 100 (258)
T ss_pred -------chhceEEEEcCC
Confidence 123566766654
No 107
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.59 E-value=0.041 Score=64.06 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=59.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|+..|.||-|..+++..++.++|+|+|++++.++.+++.. -+++++++.+..++. ++ ..+|.|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---~~---~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---PE---EQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---cC---CCCCEEE
Confidence 5889999999999999999999877789999999999999887542 135778777665432 11 2589998
Q ss_pred EecccCc
Q psy2376 482 FDLGISS 488 (896)
Q Consensus 482 ~dlG~ss 488 (896)
+|--+|+
T Consensus 324 ~D~Pcsg 330 (445)
T PRK14904 324 LDAPCTG 330 (445)
T ss_pred EcCCCCC
Confidence 8865543
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.032 Score=58.28 Aligned_cols=84 Identities=13% Similarity=0.216 Sum_probs=64.7
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDI 467 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~ 467 (896)
--++..+... ||..++|+--|.|.-|..|+..++|.|+|+.+|++++-.+.|++. +.+++++...+.. +
T Consensus 84 ~~I~~~~gi~---pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~---~ 157 (256)
T COG2519 84 GYIVARLGIS---PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR---E 157 (256)
T ss_pred HHHHHHcCCC---CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc---c
Confidence 3344455554 599999999999999999999999999999999999999999763 4577777764443 3
Q ss_pred HHHhcCCCcccEEEEecc
Q psy2376 468 ILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 468 ~l~~~~~~~~d~il~dlG 485 (896)
...+. .+|+|++|+.
T Consensus 158 ~~~~~---~vDav~LDmp 172 (256)
T COG2519 158 GIDEE---DVDAVFLDLP 172 (256)
T ss_pred ccccc---ccCEEEEcCC
Confidence 33222 6899998874
No 109
>KOG1663|consensus
Probab=95.55 E-value=0.063 Score=55.20 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=65.2
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccC-hhcHHHHHHhcCCCcccEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNC-FTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~i 480 (896)
.+.++|.-.=.|.-+.+.+..+|++|+|++||+|+++.+.+.++ .+.+++++++. -+.+++.+++.+...+|.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 45777776668888999999999999999999999999998654 35789999886 5678999888777788888
Q ss_pred EEec
Q psy2376 481 LFDL 484 (896)
Q Consensus 481 l~dl 484 (896)
+.|=
T Consensus 154 FvDa 157 (237)
T KOG1663|consen 154 FVDA 157 (237)
T ss_pred EEcc
Confidence 8873
No 110
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.52 E-value=0.056 Score=58.00 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=64.0
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILK 470 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (896)
..+++++.+..+ +++.++|.-+|.|..+..++++. +.++|+|+|.++.+++.+++.. +++.++.++..++. .
T Consensus 19 ~~~~ll~~~~~~---~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-~~~~~~~~d~~~~~---~ 90 (258)
T PRK01683 19 PARDLLARVPLE---NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-PDCQFVEADIASWQ---P 90 (258)
T ss_pred HHHHHHhhCCCc---CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-CCCeEEECchhccC---C
Confidence 445666666654 47899999999999999999997 5679999999999999997754 45777777765432 1
Q ss_pred hcCCCcccEEEEecc
Q psy2376 471 KYNIKKIDGILFDLG 485 (896)
Q Consensus 471 ~~~~~~~d~il~dlG 485 (896)
. .++|.|+.+..
T Consensus 91 ~---~~fD~v~~~~~ 102 (258)
T PRK01683 91 P---QALDLIFANAS 102 (258)
T ss_pred C---CCccEEEEccC
Confidence 1 26888887753
No 111
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.49 E-value=0.034 Score=60.25 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=57.1
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-CCCeEEEccChhcHH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-DSRFSIIHNCFTELD 466 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-~~~~~~~~~~~~~~~ 466 (896)
+.+.+++.+... +++.++|.-.|.|..|..++++. + +|+|+|+|+++++.+++.. +++++++++++.+++
T Consensus 30 i~~~i~~~l~~~---~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 30 ILDKIVDAAGPQ---PGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHHhcCCC---CcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCC
Confidence 446666666654 47899999999999999999985 3 8999999999999997653 468999999987653
No 112
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.48 E-value=0.045 Score=63.73 Aligned_cols=68 Identities=13% Similarity=0.278 Sum_probs=53.7
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhc
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTE 464 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~ 464 (896)
+.+++++.+... ++..++|+-.|.|..|..++++. .+|+|+|++++|++.|++.. -+++++++++..+
T Consensus 285 l~~~vl~~l~~~---~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 285 MVARALEWLDPQ---PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHhcCC---CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 445666666554 47899999999999999999874 58999999999999987631 2468888888754
No 113
>PRK04266 fibrillarin; Provisional
Probab=95.44 E-value=0.064 Score=56.32 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=52.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|.-.|.|+-|..+++..+ .++|+|+|+++++++...+.. ..++.+++++-.+...+.. . ..++|.|+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~-l-~~~~D~i~ 146 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAH-V-VEKVDVIY 146 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhh-c-cccCCEEE
Confidence 589999999999999999999986 789999999998877543321 2567887776544211111 0 12478887
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.43 E-value=0.049 Score=55.53 Aligned_cols=72 Identities=26% Similarity=0.352 Sum_probs=52.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcH---HHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTEL---DIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~d~il~ 482 (896)
+++.++|...|.|+-|..++++..+.++|+|+|++++. + ..++++++.+..+. ++..+....+++|.|+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 48899999999999999999998777899999999864 1 24577777776542 22222233335788876
Q ss_pred ec
Q psy2376 483 DL 484 (896)
Q Consensus 483 dl 484 (896)
|-
T Consensus 105 ~~ 106 (188)
T TIGR00438 105 DA 106 (188)
T ss_pred CC
Confidence 64
No 115
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.43 E-value=0.042 Score=58.75 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-CCCeEEEccChhc-HHHHHHhcCCCcccEEEEe
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-DSRFSIIHNCFTE-LDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~~~d~il~d 483 (896)
...++|...|.|.-+..++++. +..+|+|+|+|++|++.|++.. ..+.++++++..+ +.+.+ .+++|.|+.|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~----~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL----RGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc----CCCEeEEEEC
Confidence 4589999999999999999987 4569999999999999997642 2235666666432 21111 1246777666
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.39 E-value=0.038 Score=64.02 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=58.8
Q ss_pred hhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHHHHHh
Q psy2376 397 NWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDIILKK 471 (896)
Q Consensus 397 ~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~ 471 (896)
..+.++ ++..++|++.|.||-|..+++..+ +++|+|+|++++.++.+++.. ..++++..++-.+.....
T Consensus 232 ~~L~~~---~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-- 305 (426)
T TIGR00563 232 TWLAPQ---NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-- 305 (426)
T ss_pred HHhCCC---CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc--
Confidence 344454 489999999999999999999986 789999999999999886531 122333443322222111
Q ss_pred cCCCcccEEEEecccCcc
Q psy2376 472 YNIKKIDGILFDLGISSN 489 (896)
Q Consensus 472 ~~~~~~d~il~dlG~ss~ 489 (896)
...++|.|+.|==+|+.
T Consensus 306 -~~~~fD~VllDaPcSg~ 322 (426)
T TIGR00563 306 -ENEQFDRILLDAPCSAT 322 (426)
T ss_pred -cccccCEEEEcCCCCCC
Confidence 11258888888666654
No 117
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.36 E-value=0.047 Score=57.05 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=57.4
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTEL 465 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~ 465 (896)
+.+.+++.+... ..+++.++|.-+|.|..+..+++. ..+|+|+|+++++++.+++.. .+++++.+.+..++
T Consensus 41 ~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 41 MRRKLLDWLPKD-PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL 116 (219)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC
Confidence 344455555420 124789999999999999999875 358999999999999997642 24788888777654
Q ss_pred HHHHHhcCCCcccEEEE
Q psy2376 466 DIILKKYNIKKIDGILF 482 (896)
Q Consensus 466 ~~~l~~~~~~~~d~il~ 482 (896)
+ +++|.|+.
T Consensus 117 ~--------~~fD~ii~ 125 (219)
T TIGR02021 117 C--------GEFDIVVC 125 (219)
T ss_pred C--------CCcCEEEE
Confidence 3 24676665
No 118
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.35 E-value=0.085 Score=53.35 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=52.0
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccC------hhcHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNC------FTELD 466 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~------~~~~~ 466 (896)
.|+.+....-++.++..++|...+-||=|..++++..+.++|+|+|..+..- ...+..++++ ..++.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~-------~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP-------LQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--------TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc-------ccceeeeecccchhhHHHhhh
Confidence 4555555421112469999999999999999999986789999999998721 1223333333 33333
Q ss_pred HHHHhcCCCcccEEEEec
Q psy2376 467 IILKKYNIKKIDGILFDL 484 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dl 484 (896)
+.+.+ ..+++|.|+-|.
T Consensus 83 ~~~~~-~~~~~dlv~~D~ 99 (181)
T PF01728_consen 83 KLLPE-SGEKFDLVLSDM 99 (181)
T ss_dssp GSHGT-TTCSESEEEE--
T ss_pred hhccc-cccCcceecccc
Confidence 33332 124688888888
No 119
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.33 E-value=0.036 Score=59.14 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=58.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 406 INGIYIDATFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~-~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
+++.++|.-+|.|..+..+++.+ .|+++++|+|.++++++.|+++. .++++++++++.+++ .+..|.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-------IENASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-------CCCCCE
Confidence 37899999999999999998864 46789999999999999997652 357999988876542 224788
Q ss_pred EEEeccc
Q psy2376 480 ILFDLGI 486 (896)
Q Consensus 480 il~dlG~ 486 (896)
|+.++..
T Consensus 129 vv~~~~l 135 (247)
T PRK15451 129 VVLNFTL 135 (247)
T ss_pred EehhhHH
Confidence 8876544
No 120
>PLN02244 tocopherol O-methyltransferase
Probab=95.31 E-value=0.054 Score=60.72 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=64.8
Q ss_pred cchHHHhhhcccc--ccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccCh
Q psy2376 390 LFLNEAINWLNIE--NERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCF 462 (896)
Q Consensus 390 ~m~~e~l~~L~~~--~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~ 462 (896)
.|.+++++.+... +.++++.++|.-+|.|+.+..+.+++ +++|+|+|.++.+++.++++ ..+++++++++.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc
Confidence 4677777776541 11357899999999999999999987 46999999999999988764 235788888877
Q ss_pred hcHHHHHHhcCCCcccEEEEe
Q psy2376 463 TELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 463 ~~~~~~l~~~~~~~~d~il~d 483 (896)
.+++ ..-+.+|.|+..
T Consensus 178 ~~~~-----~~~~~FD~V~s~ 193 (340)
T PLN02244 178 LNQP-----FEDGQFDLVWSM 193 (340)
T ss_pred ccCC-----CCCCCccEEEEC
Confidence 6543 112368888764
No 121
>PRK06922 hypothetical protein; Provisional
Probab=95.30 E-value=0.04 Score=65.39 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=58.2
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
++.++|.-+|.|..+..++++. |+++++|+|+++.+++.+++. ...++.+++++..+++..+++ ..+|.|+++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fed---eSFDvVVsn 494 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEK---ESVDTIVYS 494 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCC---CCEEEEEEc
Confidence 6899999999999999999987 578999999999999998764 234678888877665544432 258888865
Q ss_pred c
Q psy2376 484 L 484 (896)
Q Consensus 484 l 484 (896)
.
T Consensus 495 ~ 495 (677)
T PRK06922 495 S 495 (677)
T ss_pred h
Confidence 3
No 122
>PRK04457 spermidine synthase; Provisional
Probab=95.27 E-value=0.054 Score=58.30 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=58.6
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
.+.++|.-+|+|.-+..++++. |+.+++++|+||+.++.+++.+ .+|+++++++..+. +++.. .++|.|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~---l~~~~-~~yD~I~ 141 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY---IAVHR-HSTDVIL 141 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH---HHhCC-CCCCEEE
Confidence 4578999999999999999988 5789999999999999998742 37899998876543 33322 3699999
Q ss_pred Eec
Q psy2376 482 FDL 484 (896)
Q Consensus 482 ~dl 484 (896)
.|.
T Consensus 142 ~D~ 144 (262)
T PRK04457 142 VDG 144 (262)
T ss_pred EeC
Confidence 983
No 123
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.26 E-value=0.052 Score=58.25 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=64.8
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (896)
.+..++++.+..+ +++.++|.-+|.|.-+..+.++. |+++|+|+|.++.+++.+++. ++++++++..++.
T Consensus 16 ~~~~~ll~~l~~~---~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~--- 85 (255)
T PRK14103 16 RPFYDLLARVGAE---RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER---GVDARTGDVRDWK--- 85 (255)
T ss_pred CHHHHHHHhCCCC---CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc---CCcEEEcChhhCC---
Confidence 4556777777764 47899999999999999999987 578999999999999998663 4677777665432
Q ss_pred HhcCCCcccEEEEeccc
Q psy2376 470 KKYNIKKIDGILFDLGI 486 (896)
Q Consensus 470 ~~~~~~~~d~il~dlG~ 486 (896)
. -.++|.|+.+..+
T Consensus 86 ~---~~~fD~v~~~~~l 99 (255)
T PRK14103 86 P---KPDTDVVVSNAAL 99 (255)
T ss_pred C---CCCceEEEEehhh
Confidence 1 1268888887765
No 124
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.26 E-value=0.054 Score=58.66 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=57.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|.-.|.|..+..+++..+++++|+|+|++++.++.+++.. -++++++++++.+++ + .-..+|.|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--~---~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--V---ADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--C---CCCceeEEE
Confidence 4899999999999888888888888889999999999999997641 257888888776543 1 112578887
Q ss_pred Ee
Q psy2376 482 FD 483 (896)
Q Consensus 482 ~d 483 (896)
.+
T Consensus 152 ~~ 153 (272)
T PRK11873 152 SN 153 (272)
T ss_pred Ec
Confidence 66
No 125
>PHA03411 putative methyltransferase; Provisional
Probab=95.14 E-value=0.055 Score=57.83 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=55.7
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEec
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dl 484 (896)
.+.++|...|.|.-+..++++.+ ..+|+|+|+|+++++.+++.. .+++++++++.+.. .+ .++|.|+.|-
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-~~v~~v~~D~~e~~---~~---~kFDlIIsNP 134 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-PEAEWITSDVFEFE---SN---EKFDVVISNP 134 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-cCCEEEECchhhhc---cc---CCCcEEEEcC
Confidence 57899999999999999988863 469999999999999998753 46888888876543 11 2588888763
No 126
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.14 E-value=0.077 Score=61.58 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=59.7
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDII 468 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~ 468 (896)
+.+.+.+... +++.++|+..|.|..|..+++.. .+|+|+|.++++++.|++.. -+++++++++..+...-
T Consensus 282 ~~~~~~l~~~---~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 282 DRALEALELQ---GEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHhccC---CCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 4445555543 37899999999999999998864 48999999999999987631 25799999998663221
Q ss_pred HHhcCCCcccEEEEe
Q psy2376 469 LKKYNIKKIDGILFD 483 (896)
Q Consensus 469 l~~~~~~~~d~il~d 483 (896)
+... -..+|.|++|
T Consensus 356 ~~~~-~~~~D~vi~d 369 (431)
T TIGR00479 356 QPWA-GQIPDVLLLD 369 (431)
T ss_pred HHhc-CCCCCEEEEC
Confidence 1111 1247888853
No 127
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.11 E-value=0.074 Score=57.54 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=53.8
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhc
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTE 464 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~ 464 (896)
.+++.+++.+..+ ||..++|.-+|.||=+..+++++ +++|.|++.+++-.+.++++ ..+++++...++.+
T Consensus 49 ~k~~~~~~~~~l~---~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 49 RKLDLLCEKLGLK---PGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHhCCC---CCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 4667778888776 59999999999999999999998 47999999999999988753 45789999999887
Q ss_pred HHH
Q psy2376 465 LDI 467 (896)
Q Consensus 465 ~~~ 467 (896)
++.
T Consensus 124 ~~~ 126 (273)
T PF02353_consen 124 LPG 126 (273)
T ss_dssp ---
T ss_pred cCC
Confidence 765
No 128
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.10 E-value=0.12 Score=53.38 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhc-HHHHHHhcCCCcccEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTE-LDIILKKYNIKKIDGI 480 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~~~~~~~~d~i 480 (896)
.+.++..--+.|.=|..+++.++++++|+.+|.|++-.+.|++. +++|+++++++-.+ +++...+...+++|.|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 45889999999999999999999899999999999999999764 35899999998766 4444444334579999
Q ss_pred EEecccC
Q psy2376 481 LFDLGIS 487 (896)
Q Consensus 481 l~dlG~s 487 (896)
+.|-.=+
T Consensus 126 FiDa~K~ 132 (205)
T PF01596_consen 126 FIDADKR 132 (205)
T ss_dssp EEESTGG
T ss_pred EEccccc
Confidence 9997543
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.10 E-value=0.06 Score=55.76 Aligned_cols=90 Identities=12% Similarity=0.223 Sum_probs=67.8
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELD 466 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~ 466 (896)
|...+++.+..+ ||..++|.--|.|..|..+.+..++.++|+++|+|++..+.|++. ..+++++++++-..-
T Consensus 60 ~~a~~l~~L~l~---pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g- 135 (209)
T PF01135_consen 60 MVARMLEALDLK---PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG- 135 (209)
T ss_dssp HHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT-
T ss_pred HHHHHHHHHhcC---CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc-
Confidence 556677777775 499999999999999999999999999999999999999999764 235789988775321
Q ss_pred HHHHhcCCCcccEEEEecccCc
Q psy2376 467 IILKKYNIKKIDGILFDLGISS 488 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG~ss 488 (896)
+.+. .++|.|+..-++..
T Consensus 136 --~~~~--apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 136 --WPEE--APFDRIIVTAAVPE 153 (209)
T ss_dssp --TGGG---SEEEEEESSBBSS
T ss_pred --cccC--CCcCEEEEeeccch
Confidence 1121 26999999988864
No 130
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.07 E-value=0.083 Score=54.24 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=55.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
++++++|+..|-|..|..+++.. +..+|+|.|+.|+|++..++- .+++++.++++.+++.. + ...|-|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~----~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--E----GKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----T----T-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--c----cccCEE
Confidence 58999999999999999999854 557899999999999887642 56889999999887765 2 258999
Q ss_pred EEecccCcccc
Q psy2376 481 LFDLGISSNQI 491 (896)
Q Consensus 481 l~dlG~ss~q~ 491 (896)
++||=-+|..+
T Consensus 174 im~lp~~~~~f 184 (200)
T PF02475_consen 174 IMNLPESSLEF 184 (200)
T ss_dssp EE--TSSGGGG
T ss_pred EECChHHHHHH
Confidence 99997676543
No 131
>PLN02476 O-methyltransferase
Probab=95.01 E-value=0.12 Score=55.84 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=63.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcH-HHHHHhcCCCcccEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTEL-DIILKKYNIKKIDGI 480 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~-~~~l~~~~~~~~d~i 480 (896)
.+.++|.--|.|.=|..+++..+++++|+++|.|++..+.|++. .++++++++++-.+. ++...+...+++|.|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 67999999999999999999998899999999999999999764 357899999987553 333222112479999
Q ss_pred EEecc
Q psy2376 481 LFDLG 485 (896)
Q Consensus 481 l~dlG 485 (896)
++|--
T Consensus 199 FIDa~ 203 (278)
T PLN02476 199 FVDAD 203 (278)
T ss_pred EECCC
Confidence 99853
No 132
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.99 E-value=0.033 Score=58.15 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=42.0
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhh-------cc------cCCCeEEEccChhcHHHHHHhcCC
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-------KI------TDSRFSIIHNCFTELDIILKKYNI 474 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~-------~~------~~~~~~~~~~~~~~~~~~l~~~~~ 474 (896)
..++|||+|.|.||.-+. .+| ++|.++.++|-.-...+ +- ...|++++++++.+.-+ .. -
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~---~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QP---D 149 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CH---S
T ss_pred CEEEECCCcchHHHHHHH-ccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hc---C
Confidence 499999999999997766 454 68999999997654332 11 12589999999977544 21 2
Q ss_pred CcccEEEEe
Q psy2376 475 KKIDGILFD 483 (896)
Q Consensus 475 ~~~d~il~d 483 (896)
..+|.|.||
T Consensus 150 ~s~DVVY~D 158 (234)
T PF04445_consen 150 NSFDVVYFD 158 (234)
T ss_dssp S--SEEEE-
T ss_pred CCCCEEEEC
Confidence 369999998
No 133
>PRK10742 putative methyltransferase; Provisional
Probab=94.98 E-value=0.056 Score=56.78 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=52.0
Q ss_pred Cc--EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc---c-------c---CCCeEEEccChhcHHHHHHh
Q psy2376 407 NG--IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK---I-------T---DSRFSIIHNCFTELDIILKK 471 (896)
Q Consensus 407 ~~--~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~---~-------~---~~~~~~~~~~~~~~~~~l~~ 471 (896)
+. .++|||.|.|.++..++.+ +++|.++|++|.+....++ + . ..|+++++++..+. |+.
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~---L~~ 160 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---LTD 160 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH---Hhh
Confidence 55 8999999999999999987 4679999999998755432 1 1 15788888886443 433
Q ss_pred cCCCcccEEEEe
Q psy2376 472 YNIKKIDGILFD 483 (896)
Q Consensus 472 ~~~~~~d~il~d 483 (896)
.. ..+|.|.+|
T Consensus 161 ~~-~~fDVVYlD 171 (250)
T PRK10742 161 IT-PRPQVVYLD 171 (250)
T ss_pred CC-CCCcEEEEC
Confidence 22 258999987
No 134
>PLN03075 nicotianamine synthase; Provisional
Probab=94.93 E-value=0.071 Score=57.81 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=78.1
Q ss_pred CcEEEEEccCCChhHHHHHH-HcCCCcEEEEEeCCHHHHHHhhccc------CCCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 407 NGIYIDATFGQGGHSCKILE-RLGKKGRLIAIDKDTESVSLGNKIT------DSRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~-~~~~~~~~~~~D~d~~a~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
.+.++|.=.|.|+.|..++. +..|+++++|+|+|+++++.|++.. .+|++|...|-.+.... .+++|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-----l~~FDl 198 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-----LKEYDV 198 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-----cCCcCE
Confidence 57899999998888766655 4568899999999999999998753 47899999887664211 236899
Q ss_pred EEEecccCccccCCC------CCCccCC-CCCCccccCCCCCCCCHHHHHhcc-CHHHHHHHHHHhcCc
Q psy2376 480 ILFDLGISSNQINNE------LRGFSFL-LDGPLDMRMDITRGISASKWLANA-TEFNIKKVIQDYGEE 540 (896)
Q Consensus 480 il~dlG~ss~q~~~~------~rgfs~~-~~~~ldmrm~~~~~~~a~~~~~~~-~~~~l~~i~~~yg~~ 540 (896)
|+.+ .-..+|.+ ++=.... .+|-|=|||- .| +..++-.. +++++ +-|+.|+.-
T Consensus 199 VF~~---ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~--~G--~r~~LYp~v~~~~~-~gf~~~~~~ 259 (296)
T PLN03075 199 VFLA---ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA--HG--ARAFLYPVVDPCDL-RGFEVLSVF 259 (296)
T ss_pred EEEe---cccccccccHHHHHHHHHHhcCCCcEEEEecc--cc--hHhhcCCCCChhhC-CCeEEEEEE
Confidence 9999 33334322 2222323 3667777772 22 23355543 33333 355555543
No 135
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.90 E-value=0.073 Score=60.48 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=54.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
++.++|+..|.|..|..++.+ ..+|+|+|+|+.|++.|++.. -+++++++++..+..... .+++|.|++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~----~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ----MSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc----CCCCCEEEE
Confidence 678999999999999999964 358999999999999887531 247899998886553221 124788888
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
|
T Consensus 307 D 307 (374)
T TIGR02085 307 N 307 (374)
T ss_pred C
Confidence 8
No 136
>PRK05785 hypothetical protein; Provisional
Probab=94.87 E-value=0.039 Score=58.04 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=96.0
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
++.++|.-+|.|-.+..+.++. +++|+|+|.++++++.+++. ...+++++.+++ +.-..+|.|+..+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~----~~~~~~d~~~lp-----~~d~sfD~v~~~~~l 120 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA----DDKVVGSFEALP-----FRDKSFDVVMSSFAL 120 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc----cceEEechhhCC-----CCCCCEEEEEecChh
Confidence 6799999999999999998886 46999999999999998753 234566665543 112369999998887
Q ss_pred CccccCCCCCCccCCCC--CC----ccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccH-HHHHHHHHHHhccCCC
Q psy2376 487 SSNQINNELRGFSFLLD--GP----LDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFA-KKIAKEIVHYRSITPI 559 (896)
Q Consensus 487 ss~q~~~~~rgfs~~~~--~~----ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~-~~~a~~i~~~r~~~~~ 559 (896)
++++|+++.++=... -| |++ ..........+.+-|...-+-.+-+-++..+.+ +.+.+-|. .+
T Consensus 121 --~~~~d~~~~l~e~~RvLkp~~~ile~--~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~------~f 190 (226)
T PRK05785 121 --HASDNIEKVIAEFTRVSRKQVGFIAM--GKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYE------RL 190 (226)
T ss_pred --hccCCHHHHHHHHHHHhcCceEEEEe--CCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH------HC
Confidence 467777776642211 12 232 111122234555666666666666666655544 35555442 35
Q ss_pred cchHHHHHHHHhh
Q psy2376 560 TRTKQLVEIILKS 572 (896)
Q Consensus 560 ~~t~~l~~~~~~~ 572 (896)
.+..+|.++.+++
T Consensus 191 ~~~~~~~~~~~~~ 203 (226)
T PRK05785 191 PTNSFHREIFEKY 203 (226)
T ss_pred CCHHHHHHHHHHH
Confidence 6788888888775
No 137
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.87 E-value=0.097 Score=57.13 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=45.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccCh
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCF 462 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~ 462 (896)
...++|...|.|.-+..+++.. ++.+|+|+|++++|++.|++. ..+|+++++++.
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 3689999999999999999987 567999999999999998763 234678877764
No 138
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.85 E-value=0.074 Score=61.79 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=63.2
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+|+..++|++.|-||=|..|++.++.+|.|+|.|+++.=++..++. . -.++.+.+.+-.++.+.+.. .+|.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~----~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPE----TFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchh----hcCeE
Confidence 3689999999999999999999998889999999999987766542 2 24566766665555544433 58999
Q ss_pred EEecccCc
Q psy2376 481 LFDLGISS 488 (896)
Q Consensus 481 l~dlG~ss 488 (896)
|.|-=||.
T Consensus 188 LvDaPCSG 195 (470)
T PRK11933 188 LLDAPCSG 195 (470)
T ss_pred EEcCCCCC
Confidence 99999885
No 139
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.073 Score=61.21 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=66.2
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTEL 465 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~ 465 (896)
.|.+.+++++... +++.++|+.+|.|+-|..+.++. .+|+|+|+.++|++.|++. --++++++.++=+++
T Consensus 280 kl~~~a~~~~~~~---~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 280 KLYETALEWLELA---GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHhhc---CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 4778889998875 37899999999999999999765 5899999999999998763 234588887776555
Q ss_pred HHHHHhcCCCcccEEEEe
Q psy2376 466 DIILKKYNIKKIDGILFD 483 (896)
Q Consensus 466 ~~~l~~~~~~~~d~il~d 483 (896)
..-..+ -...|.|++|
T Consensus 354 ~~~~~~--~~~~d~VvvD 369 (432)
T COG2265 354 TPAWWE--GYKPDVVVVD 369 (432)
T ss_pred hhhccc--cCCCCEEEEC
Confidence 443321 1257888875
No 140
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.67 E-value=0.092 Score=56.87 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=54.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
++..++|...|.|..+..+++.. ++.+++|+|+++++++.+++. ..+++++++.++.+- +. -.++|.|+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~---~~---~~~fD~Iv 180 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP---LP---GGRFDLIV 180 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---CC---CCceeEEE
Confidence 46789999999999999999998 568999999999999998764 235678887765211 01 12577777
Q ss_pred Eec
Q psy2376 482 FDL 484 (896)
Q Consensus 482 ~dl 484 (896)
.|.
T Consensus 181 ~np 183 (275)
T PRK09328 181 SNP 183 (275)
T ss_pred ECC
Confidence 654
No 141
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.66 E-value=0.089 Score=55.34 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=58.8
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
...++|.-+|.|..+..+++.. +..+++|+|.++++++.+++...++++++..+..+.+. .-+++|.|+.+...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~fD~vi~~~~l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPL-----EDSSFDLIVSNLAL 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCC-----CCCceeEEEEhhhh
Confidence 4789999999999999999987 56789999999999999877655678888888765431 11358988877543
No 142
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.65 E-value=0.12 Score=53.32 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=38.6
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
++.++|.-+|.|..+..+.+.. +.++++|+|+++++++.|++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhh
Confidence 6789999999999999999887 467999999999999999763
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.57 E-value=0.19 Score=51.54 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=56.5
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhc-HHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTE-LDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~-~~~~l~~~~~~~~d~il 481 (896)
..++||.-+|.|.|...++++. |+..++|+|+....+..+.+. --+|+.+++++-.. +..++++ ..+|.|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~---~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPP---GSVDRIY 93 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTT---TSEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccC---CchheEE
Confidence 4599999999999999999998 578999999999999887542 24789999988776 4444442 2688887
Q ss_pred Eec
Q psy2376 482 FDL 484 (896)
Q Consensus 482 ~dl 484 (896)
+++
T Consensus 94 i~F 96 (195)
T PF02390_consen 94 INF 96 (195)
T ss_dssp EES
T ss_pred EeC
Confidence 764
No 144
>COG4267 Predicted membrane protein [Function unknown]
Probab=94.46 E-value=9.9 Score=42.21 Aligned_cols=107 Identities=9% Similarity=0.131 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhH
Q psy2376 44 AFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKI 123 (896)
Q Consensus 44 a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~ 123 (896)
..+.-..+..++ .||++...++.+|..+=+++.++.....-.+..+....+..++.+ .-...+ ++
T Consensus 65 sv~Y~~ifS~Ii-Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~--------vf~~~~----~~-- 129 (467)
T COG4267 65 SVTYCFIFSQII-TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI--------VFFVNN----QY-- 129 (467)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH--------hhhhcC----ch--
Confidence 333334444444 578999999999998877766666554433333333333333221 111211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHhHHHHHHH
Q psy2376 124 FNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLN 168 (896)
Q Consensus 124 ~~~a~~~l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i~~ii~n 168 (896)
...|=..+...+..++...+...++-+.++.+....+-.+.+
T Consensus 130 ---si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~ 171 (467)
T COG4267 130 ---SIVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGY 171 (467)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233445556666666677777777666554444433
No 145
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.40 E-value=0.091 Score=56.29 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=58.5
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHH
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELD 466 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~ 466 (896)
..+.+++++.+... +++.++|.-.|.|..|..|+++.+ +|+++|.|+.+++.+++.. .++++++++++.+++
T Consensus 15 ~~i~~~i~~~~~~~---~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 15 ESVIQKIVEAANVL---EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHHhcCCC---CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC
Confidence 34667777777654 488999999999999999999863 5999999999999987653 467899998886544
No 146
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.36 E-value=0.15 Score=52.50 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred HhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHH
Q psy2376 395 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILK 470 (896)
Q Consensus 395 ~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~ 470 (896)
+++.+... .++..++|+..|.|.-+...+.+. ..+|+++|+|++|++.+++. . -+++++++++..+ .++
T Consensus 44 l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~---~l~ 116 (199)
T PRK10909 44 LFNWLAPV--IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALS---FLA 116 (199)
T ss_pred HHHHHhhh--cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHH---HHh
Confidence 44555331 237799999999999998777764 35999999999999988753 1 2468888887643 232
Q ss_pred hcCCCcccEEEEe
Q psy2376 471 KYNIKKIDGILFD 483 (896)
Q Consensus 471 ~~~~~~~d~il~d 483 (896)
... .++|.|++|
T Consensus 117 ~~~-~~fDlV~~D 128 (199)
T PRK10909 117 QPG-TPHNVVFVD 128 (199)
T ss_pred hcC-CCceEEEEC
Confidence 211 247888764
No 147
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.30 E-value=0.12 Score=52.76 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=57.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhc---HHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE---LDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~d~il~ 482 (896)
++.++||...=-||+|+...++.+++++|+|+|+||... -..+.+++++|.+ ..++....+-.++|.|+=
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-------CCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 489999999999999999999999999999999998763 2348888888753 556666666556777775
Q ss_pred ec
Q psy2376 483 DL 484 (896)
Q Consensus 483 dl 484 (896)
|.
T Consensus 118 D~ 119 (205)
T COG0293 118 DM 119 (205)
T ss_pred cC
Confidence 54
No 148
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.19 E-value=0.17 Score=54.58 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=61.2
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~~l 469 (896)
.+++++.+... ++..++|..+|.|+-+..+++.. .++|+|+|.++.+++.++++. .+++++++.++.+.+
T Consensus 41 ~~~~l~~l~l~---~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~--- 112 (263)
T PTZ00098 41 TTKILSDIELN---ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD--- 112 (263)
T ss_pred HHHHHHhCCCC---CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC---
Confidence 45666666654 48899999999999999998875 469999999999999998653 457888888775321
Q ss_pred HhcCCCcccEEEEe
Q psy2376 470 KKYNIKKIDGILFD 483 (896)
Q Consensus 470 ~~~~~~~~d~il~d 483 (896)
..-..+|.|+..
T Consensus 113 --~~~~~FD~V~s~ 124 (263)
T PTZ00098 113 --FPENTFDMIYSR 124 (263)
T ss_pred --CCCCCeEEEEEh
Confidence 111257777763
No 149
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.14 E-value=0.13 Score=60.71 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=55.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+..++|...|.|.-+..++++. |+.+|+|+|++++|++.|++. ..+|++++++++-+ .+. -.++|.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~---~~~---~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE---NIE---KQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh---hCc---CCCccEEE
Confidence 5689999999999999999987 568999999999999999763 24678888887522 111 12578888
Q ss_pred Eec
Q psy2376 482 FDL 484 (896)
Q Consensus 482 ~dl 484 (896)
.|-
T Consensus 212 sNP 214 (506)
T PRK01544 212 SNP 214 (506)
T ss_pred ECC
Confidence 774
No 150
>PRK06202 hypothetical protein; Provisional
Probab=94.11 E-value=0.11 Score=54.83 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=53.2
Q ss_pred cCcEEEEEccCCChhHHHHHHHc---CCCcEEEEEeCCHHHHHHhhccc-CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERL---GKKGRLIAIDKDTESVSLGNKIT-DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~---~~~~~~~~~D~d~~a~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
++..++|.-+|.|..+..|++.. +++.+++|+|.++++++.+++.. ..++++.......++. .-.++|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~-----~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA-----EGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc-----cCCCccEEE
Confidence 36789999999999999998754 45569999999999999997653 2345544433333321 112578888
Q ss_pred Eeccc
Q psy2376 482 FDLGI 486 (896)
Q Consensus 482 ~dlG~ 486 (896)
.+.+.
T Consensus 135 ~~~~l 139 (232)
T PRK06202 135 SNHFL 139 (232)
T ss_pred ECCee
Confidence 77653
No 151
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.03 E-value=0.19 Score=52.27 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=58.6
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDII 468 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~ 468 (896)
..+++.+..+ ++..++|...|.|..|..+.+.. ++++++|+++++++.+++.. -+++++++++..+-
T Consensus 68 ~~l~~~l~~~---~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--- 138 (212)
T PRK00312 68 ARMTELLELK---PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG--- 138 (212)
T ss_pred HHHHHhcCCC---CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC---
Confidence 4445556554 48899999999999998776664 38999999999999887642 13588888875431
Q ss_pred HHhcCCCcccEEEEecc
Q psy2376 469 LKKYNIKKIDGILFDLG 485 (896)
Q Consensus 469 l~~~~~~~~d~il~dlG 485 (896)
+.. .+++|.|+.|-.
T Consensus 139 ~~~--~~~fD~I~~~~~ 153 (212)
T PRK00312 139 WPA--YAPFDRILVTAA 153 (212)
T ss_pred CCc--CCCcCEEEEccC
Confidence 111 136899998753
No 152
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.02 E-value=0.19 Score=55.42 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=50.0
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHHH
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDII 468 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~ 468 (896)
++..++|.-+|+|..|..|+++.++..+++|+|+++++++.+++.. ..++..+++++.+....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 3678999999999999999999854578999999999999886531 23466788888664433
No 153
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.97 E-value=0.073 Score=59.91 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=50.4
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTEL 465 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~ 465 (896)
.|.+.+++++...+ + .++|.-+|.|..|..+.++. .+|+|+|.+++|++.|++. --+++++++.+=+++
T Consensus 184 ~l~~~~~~~l~~~~---~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWLDLSK---G-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHCTT-T---T-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHhhcCC---C-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 57788888888753 4 68999999999999999876 4899999999999999753 125688887654443
No 154
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.86 E-value=0.17 Score=59.47 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=61.1
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDII 468 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~ 468 (896)
.+++++.+..+ ++..++|..+|.|+++..++++. +++++|+|+++++++.|++. ...++++++.+..+.+
T Consensus 255 te~l~~~~~~~---~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 255 TKEFVDKLDLK---PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred HHHHHHhcCCC---CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 35566665543 47899999999999999999876 46999999999999998754 2457888888775532
Q ss_pred HHhcCCCcccEEEEe
Q psy2376 469 LKKYNIKKIDGILFD 483 (896)
Q Consensus 469 l~~~~~~~~d~il~d 483 (896)
+. -+++|.|+..
T Consensus 328 ~~---~~~fD~I~s~ 339 (475)
T PLN02336 328 YP---DNSFDVIYSR 339 (475)
T ss_pred CC---CCCEEEEEEC
Confidence 11 1258888764
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.86 E-value=0.3 Score=50.68 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=64.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
.+.++...-+.|.=|..++..++++++++.+|+|++-.+.|++. .+++++++.+ -+--+.+++...+++|.|+
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~--gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG--GDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec--CcHHHHHHhccCCCccEEE
Confidence 67899999999999999999998899999999999999999874 3677888885 3444445543345799999
Q ss_pred EecccCc
Q psy2376 482 FDLGISS 488 (896)
Q Consensus 482 ~dlG~ss 488 (896)
.|=.=+.
T Consensus 138 IDadK~~ 144 (219)
T COG4122 138 IDADKAD 144 (219)
T ss_pred EeCChhh
Confidence 9876544
No 156
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.16 Score=50.81 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=49.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+|+.++|.-+|+|--+..-+-. ++ .+|+|+|+||+|++.+++. ..+++.++.++-+++.. ++|-++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~--------~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRG--------KFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCC--------ccceEEE
Confidence 3779999999999776655443 44 4999999999999998753 45678888777655431 4666665
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
|
T Consensus 115 N 115 (198)
T COG2263 115 N 115 (198)
T ss_pred C
Confidence 5
No 157
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.70 E-value=0.32 Score=53.03 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=62.6
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+++..++|++.+-||-|..+++..+..++++|.|+++.-++.-++. . ..++..++....+........ .+|.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~---~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES---KFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT---TEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc---ccchh
Confidence 3589999999999999999999998899999999999988766532 2 345666665555554333221 58999
Q ss_pred EEecccCcc
Q psy2376 481 LFDLGISSN 489 (896)
Q Consensus 481 l~dlG~ss~ 489 (896)
+.|-=+|..
T Consensus 161 lvDaPCSg~ 169 (283)
T PF01189_consen 161 LVDAPCSGL 169 (283)
T ss_dssp EEECSCCCG
T ss_pred hcCCCccch
Confidence 999888864
No 158
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.59 E-value=0.21 Score=50.43 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=49.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCc--------EEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKG--------RLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKY 472 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~--------~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 472 (896)
++++++|-.+|.|.=...-+....... +++|.|+|+++++.|++. .++.+.+.+.++.+++ +.+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~~~- 104 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--LPD- 104 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--GTT-
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--ccc-
Confidence 488999999999987755444432222 499999999999988753 3566888888898887 211
Q ss_pred CCCcccEEEEec
Q psy2376 473 NIKKIDGILFDL 484 (896)
Q Consensus 473 ~~~~~d~il~dl 484 (896)
..+|.|+.|.
T Consensus 105 --~~~d~IvtnP 114 (179)
T PF01170_consen 105 --GSVDAIVTNP 114 (179)
T ss_dssp --SBSCEEEEE-
T ss_pred --CCCCEEEECc
Confidence 2689998874
No 159
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=93.48 E-value=0.21 Score=51.37 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChh
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFT 463 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~ 463 (896)
.++++.+... +++.++|.-+|.|.++..++++ ..+|+|+|.++++++.++++. -.+++++..++.
T Consensus 20 ~~l~~~l~~~---~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVKVV---KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN 88 (197)
T ss_pred HHHHHhcccC---CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh
Confidence 4555555553 3689999999999999999986 358999999999999887641 123555555543
No 160
>PRK14967 putative methyltransferase; Provisional
Probab=93.44 E-value=0.22 Score=52.24 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=53.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+++.++|.-+|.|.-+..+++. + ..+++|+|+++++++.+++. .+.+++++++++.+ .+++ .++|.|+.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~---~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF---RPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC---CCeeEEEE
Confidence 4789999999999999888775 3 35999999999999988763 23357777776643 2222 26899998
Q ss_pred ecc
Q psy2376 483 DLG 485 (896)
Q Consensus 483 dlG 485 (896)
|-.
T Consensus 108 npP 110 (223)
T PRK14967 108 NPP 110 (223)
T ss_pred CCC
Confidence 754
No 161
>PHA03412 putative methyltransferase; Provisional
Probab=93.39 E-value=0.16 Score=53.21 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=45.6
Q ss_pred CcEEEEEccCCChhHHHHHHHcC--CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChh
Q psy2376 407 NGIYIDATFGQGGHSCKILERLG--KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFT 463 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~--~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~ 463 (896)
++.++|...|.|.=+..++++.. +..+|.|+|+|+.|++.|++.. .++.+++.++.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-~~~~~~~~D~~ 107 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-PEATWINADAL 107 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-cCCEEEEcchh
Confidence 57999999999999999998753 3579999999999999998653 34667776654
No 162
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.36 E-value=0.41 Score=50.94 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcC--CCcccE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYN--IKKIDG 479 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~--~~~~d~ 479 (896)
.+.++..--+.|.=|..+++..+++++|+++|+|++..+.|++. +.+++++++++..+.-.-+...+ .+++|.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 35788888888999999999998999999999999999988764 36899999998766433333222 247999
Q ss_pred EEEe
Q psy2376 480 ILFD 483 (896)
Q Consensus 480 il~d 483 (896)
|++|
T Consensus 160 iFiD 163 (247)
T PLN02589 160 IFVD 163 (247)
T ss_pred EEec
Confidence 9998
No 163
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.30 E-value=0.2 Score=51.05 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=46.6
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
-..|.+..+... +-..++|.-+|-|+-|..|.+++ |+..|.|||-+++.++.|+++
T Consensus 18 Pa~dLla~Vp~~---~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r 73 (257)
T COG4106 18 PARDLLARVPLE---RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR 73 (257)
T ss_pred cHHHHHhhCCcc---ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh
Confidence 345556555554 46789999999999999999999 578999999999999999754
No 164
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.27 E-value=0.33 Score=42.49 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred EEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-cCCCeEEEccChhcHHHHHHhcCCCcccEEEEec
Q psy2376 411 IDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-TDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 411 vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dl 484 (896)
+|.-.|.|..+..++++ +..+++|+|.++++++.++++ ...+..+++.+..+++ ++ -..+|.|+..-
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--FP---DNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--S----TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--cc---ccccccccccc
Confidence 58889999999999998 467999999999999999876 3456778888887773 11 12688886654
No 165
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.07 E-value=0.24 Score=53.72 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=46.0
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCC--cEEEEEeCCHHHHHHhhcccCCCeEEEccChhcH
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKK--GRLIAIDKDTESVSLGNKITDSRFSIIHNCFTEL 465 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~--~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~ 465 (896)
+..++|.-+|.|.++..+.+..++. ..++|+|+++++++.|++.. .++++...+..++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-~~~~~~~~d~~~l 145 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-PQVTFCVASSHRL 145 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-CCCeEEEeecccC
Confidence 5789999999999999999987543 37999999999999997653 3466666655443
No 166
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.04 E-value=0.28 Score=52.68 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=54.7
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhc
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTE 464 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~ 464 (896)
++.+++.+..+ ||..++|.-+|.|+=+...++++ +.+|+|+|.+++..+.++++ .++++++...++++
T Consensus 61 ~~~~~~kl~L~---~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 61 LDLILEKLGLK---PGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHhcCCC---CCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 46677778876 59999999999999999999998 57999999999999998763 34566665554433
No 167
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.01 E-value=0.35 Score=53.40 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=47.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChh
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFT 463 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~ 463 (896)
++..++|.-.|.|..+..++++. |+++++++|. |.+++.+++. ..+|++++.++|.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 47899999999999999999998 5789999998 7888887653 3578999988874
No 168
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=92.98 E-value=0.2 Score=51.29 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHh
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKK 471 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (896)
++++.+.+.+ ++.++|..+|.|.++..+.+.. ...++|+|.++++++.+++ .++++++.+..+- +..
T Consensus 4 ~~~i~~~i~~-----~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~---~~~~~~~~d~~~~---l~~ 70 (194)
T TIGR02081 4 LESILNLIPP-----GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA---RGVNVIQGDLDEG---LEA 70 (194)
T ss_pred HHHHHHhcCC-----CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH---cCCeEEEEEhhhc---ccc
Confidence 4556665543 6799999999999999988764 3478999999999988864 3467777665431 111
Q ss_pred cCCCcccEEEEec
Q psy2376 472 YNIKKIDGILFDL 484 (896)
Q Consensus 472 ~~~~~~d~il~dl 484 (896)
..-.++|.|+.+.
T Consensus 71 ~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 71 FPDKSFDYVILSQ 83 (194)
T ss_pred cCCCCcCEEEEhh
Confidence 1123588888763
No 169
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=92.98 E-value=0.43 Score=53.99 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=45.2
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcH
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTEL 465 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~ 465 (896)
+.++|.-.|.|.-|.++.+.. .+|+|+|.+++|++.+++.. -+++++++++-.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 469999999999999888875 38999999999999987631 24788998887654
No 170
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.75 E-value=0.3 Score=54.16 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=45.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcH
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTEL 465 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~ 465 (896)
++..++|.-+|+|..+..+.+. +++|+|+|.++++++.+++.. .+++++++++.+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 4779999999999999988763 468999999999999997531 24677777776554
No 171
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.70 E-value=11 Score=41.50 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=43.5
Q ss_pred CChhHHHH--HHHcCCCcEEEEEeCCHHHHHHhhcc-----------cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 417 QGGHSCKI--LERLGKKGRLIAIDKDTESVSLGNKI-----------TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 417 ~Gghs~~l--l~~~~~~~~~~~~D~d~~a~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
+|||-.++ |-++|.-.++.-.|.||+.++.+++. .+.|++.+.++=- +.++.-+ ...|.++.|
T Consensus 297 GGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf---~wlr~a~-~~fD~vIVD 372 (508)
T COG4262 297 GGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF---QWLRTAA-DMFDVVIVD 372 (508)
T ss_pred cCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH---HHHHhhc-ccccEEEEe
Confidence 45565554 33455578999999999999998731 3688998877522 2333322 268999999
Q ss_pred c
Q psy2376 484 L 484 (896)
Q Consensus 484 l 484 (896)
|
T Consensus 373 l 373 (508)
T COG4262 373 L 373 (508)
T ss_pred C
Confidence 7
No 172
>PRK00811 spermidine synthase; Provisional
Probab=92.64 E-value=0.31 Score=53.16 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=57.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc---------CCCeEEEccChhcHHHHHHhcCCCcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT---------DSRFSIIHNCFTELDIILKKYNIKKI 477 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (896)
.+.++|+-.|.|+-+..++++. +..+|.++|+|++.++.+++.+ ++|++++.++-.+ +++. .-+++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~---~l~~-~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK---FVAE-TENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH---HHhh-CCCcc
Confidence 4678999999999999999863 4569999999999999998632 4689998887654 3433 22379
Q ss_pred cEEEEec
Q psy2376 478 DGILFDL 484 (896)
Q Consensus 478 d~il~dl 484 (896)
|.|+.|+
T Consensus 152 DvIi~D~ 158 (283)
T PRK00811 152 DVIIVDS 158 (283)
T ss_pred cEEEECC
Confidence 9999985
No 173
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.2 Score=54.41 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=51.8
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cC-CCeEEEccC-hhcHHHHHHhcCCCcccEEEEe
Q psy2376 409 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TD-SRFSIIHNC-FTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 409 ~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~-~~~~~~~~~-~~~~~~~l~~~~~~~~d~il~d 483 (896)
.++|...|.|-=+.+++++. |+.+|+|.|++++|++.|++. .+ .|+.+++++ |+.+.. ++|.|++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--------~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--------KFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--------ceeEEEeC
Confidence 79999999999999999998 568999999999999999753 22 556666554 544432 57888876
No 174
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=92.53 E-value=0.41 Score=54.12 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=51.8
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----C--CCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----D--SRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~--~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
++.++|.-+|+|--+..++++. |+.+|+++|+++.|++.|++.. + ++++++.++.- +...-.++|.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l------~~~~~~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL------SGVEPFRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc------ccCCCCCEEE
Confidence 5789999999999999999997 5789999999999999997631 1 25677665531 1111125777
Q ss_pred EEEe
Q psy2376 480 ILFD 483 (896)
Q Consensus 480 il~d 483 (896)
|+.|
T Consensus 302 IlsN 305 (378)
T PRK15001 302 VLCN 305 (378)
T ss_pred EEEC
Confidence 7766
No 175
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=92.37 E-value=0.53 Score=48.05 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=46.3
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChh
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFT 463 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~ 463 (896)
++..++|+-.|.|.=+...+++- . .+|+++|+|++|++.+++. .++++++++.+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 37899999999999999999984 2 4899999999999888653 3457888888763
No 176
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.31 E-value=0.43 Score=54.33 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=48.9
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccC-CCeEEEccCh
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITD-SRFSIIHNCF 462 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~-~~~~~~~~~~ 462 (896)
+.+++.+..+ |+..++|.-+|.|+-+..++++. +++|+|+|.++++++.++++.. .++++...++
T Consensus 157 ~~l~~~l~l~---~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~ 222 (383)
T PRK11705 157 DLICRKLQLK---PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHhCCC---CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence 4455555554 48899999999999999999886 4699999999999999977532 2345555444
No 177
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=92.18 E-value=0.5 Score=52.66 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=47.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-CCCeEEEccChhcH
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-DSRFSIIHNCFTEL 465 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-~~~~~~~~~~~~~~ 465 (896)
++..++|...|.|.-+..++++.+ ..+++++|.++++++.+++.. .+++++++++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC
Confidence 478999999999999999999884 479999999999999987653 34567776666443
No 178
>KOG3420|consensus
Probab=92.05 E-value=0.2 Score=47.60 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccCh
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCF 462 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~ 462 (896)
+|+...|..+|.|--+ +.-..++...|+|||+||+|++..++. ++-+..+++...
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi 105 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI 105 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec
Confidence 3788999999999877 333444566899999999999998653 333345555554
No 179
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.82 E-value=0.72 Score=52.69 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=52.5
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cC-CCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TD-SRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
++.++|+..|.|+-+...+. +...+|+++|+|+.|++.+++. .+ +++++++++..+..+-+...+ .++|.|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~-~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG-EKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcC-CCCCEE
Confidence 78999999999998776554 2345999999999999998763 22 478899887544322222111 258888
Q ss_pred EEe
Q psy2376 481 LFD 483 (896)
Q Consensus 481 l~d 483 (896)
+.|
T Consensus 298 ilD 300 (396)
T PRK15128 298 VMD 300 (396)
T ss_pred EEC
Confidence 854
No 180
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=91.69 E-value=0.56 Score=47.76 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=39.1
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
..|+++.++.- +.+.++|.-+|.|.+|.+|+++ +-.|.|+|+++.|++.+++
T Consensus 19 hs~v~~a~~~~---~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~ 70 (192)
T PF03848_consen 19 HSEVLEAVPLL---KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQR 70 (192)
T ss_dssp -HHHHHHCTTS----SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred cHHHHHHHhhc---CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHH
Confidence 34555555543 2578999999999999999997 3589999999999987654
No 181
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=91.49 E-value=0.43 Score=52.75 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=37.3
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
++..++|.-+|.|..+..++++ ..+|+|+|+.+.+++.++++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERR 185 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHH
Confidence 4789999999999999999985 35899999999999998765
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.37 E-value=0.64 Score=48.83 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=57.5
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeE-EEccChhcHHHHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFS-IIHNCFTELDIILK 470 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 470 (896)
++++++.+... .++.+++|..+|.|+.|..++++ + -.+|+|+|.++..+... .+.+.|+. +-..|++++. ..
T Consensus 63 L~~~l~~~~~~--~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~-l~~~~~v~~~~~~ni~~~~--~~ 135 (228)
T TIGR00478 63 LKEALEEFNID--VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEK-LRQDERVKVLERTNIRYVT--PA 135 (228)
T ss_pred HHHHHHhcCCC--CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHH-HhcCCCeeEeecCCcccCC--Hh
Confidence 35666665542 24889999999999999999997 3 46899999999776552 11245654 4555666432 11
Q ss_pred hcCCCcccEEEEecccCccc
Q psy2376 471 KYNIKKIDGILFDLGISSNQ 490 (896)
Q Consensus 471 ~~~~~~~d~il~dlG~ss~q 490 (896)
+. ..|.+.+|+=+.|..
T Consensus 136 ~~---~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 136 DI---FPDFATFDVSFISLI 152 (228)
T ss_pred Hc---CCCceeeeEEEeehH
Confidence 11 135566665555543
No 183
>PLN02366 spermidine synthase
Probab=91.26 E-value=0.9 Score=50.03 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=56.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--------CCCeEEEccChhcHHHHHHhcCCCccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--------DSRFSIIHNCFTELDIILKKYNIKKID 478 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~d 478 (896)
.+.++|.=.|.|+=+..++++ ++..+|..+|+|++.++.+++.+ ++|++++.++-.+ ++++..-+++|
T Consensus 92 pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~---~l~~~~~~~yD 167 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE---FLKNAPEGTYD 167 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH---HHhhccCCCCC
Confidence 467889999999999999876 45579999999999999998742 4689998877533 33332123699
Q ss_pred EEEEec
Q psy2376 479 GILFDL 484 (896)
Q Consensus 479 ~il~dl 484 (896)
.|+.|+
T Consensus 168 vIi~D~ 173 (308)
T PLN02366 168 AIIVDS 173 (308)
T ss_pred EEEEcC
Confidence 999875
No 184
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=91.26 E-value=0.62 Score=49.71 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=55.7
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (896)
.+.+.+++.+... +++.++|.-+|.|..+..+.++ ..+++|+|+++++++.+++... ...+++++.++++
T Consensus 29 ~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-~~~~~~~d~~~~~--- 98 (251)
T PRK10258 29 QSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-ADHYLAGDIESLP--- 98 (251)
T ss_pred HHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-CCCEEEcCcccCc---
Confidence 4555566666543 3678999999999999888764 3689999999999999876532 2345566655432
Q ss_pred HhcCCCcccEEEEe
Q psy2376 470 KKYNIKKIDGILFD 483 (896)
Q Consensus 470 ~~~~~~~~d~il~d 483 (896)
..-..+|.|+-+
T Consensus 99 --~~~~~fD~V~s~ 110 (251)
T PRK10258 99 --LATATFDLAWSN 110 (251)
T ss_pred --CCCCcEEEEEEC
Confidence 111246776654
No 185
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=91.24 E-value=0.74 Score=46.70 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=59.0
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccC-hhc
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNC-FTE 464 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~-~~~ 464 (896)
+.+.+.++|... .-+|..++|+..|.|.-+..-|++- -.+|+.+|+|++|.+..++. ..++.+.++.+ +..
T Consensus 28 vrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 28 VREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 345555667654 1258999999999999999999984 34899999999999887653 34578887766 555
Q ss_pred HHHHHHhcCCCcccEEEEe
Q psy2376 465 LDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 465 ~~~~l~~~~~~~~d~il~d 483 (896)
+.+..+. -.++|.|.+|
T Consensus 105 l~~~~~~--~~~fDiIflD 121 (183)
T PF03602_consen 105 LLKLAKK--GEKFDIIFLD 121 (183)
T ss_dssp HHHHHHC--TS-EEEEEE-
T ss_pred HHhhccc--CCCceEEEEC
Confidence 5554322 2368999887
No 186
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=91.12 E-value=0.68 Score=48.52 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=50.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc-----CCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-----DSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
++..++|.-+|.|..+..++++. .+++|+|.++.+++.+++.. .+++.+...++... .+.+|.|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~v 131 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--------LGRFDTV 131 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--------cCCcCEE
Confidence 47789999999999999998863 46999999999999997642 24677777774321 1246777
Q ss_pred EEe
Q psy2376 481 LFD 483 (896)
Q Consensus 481 l~d 483 (896)
+..
T Consensus 132 ~~~ 134 (230)
T PRK07580 132 VCL 134 (230)
T ss_pred EEc
Confidence 653
No 187
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=90.88 E-value=0.72 Score=51.65 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.5
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
.+.++|.-+|.|..+..++++. |+.+|+++|+++.|++.+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~n 239 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRAT 239 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999987 567999999999999999763
No 188
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=90.76 E-value=0.63 Score=51.73 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc---cc--CCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK---IT--DSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~---~~--~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+++.++|.-+|+|.|+..+++.. + .+|+|+|.++..+..++. .. +.++++++.+.++++. -..+|.|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~------~~~FD~V 193 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA------LKAFDTV 193 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC------cCCcCEE
Confidence 47899999999999999999984 3 379999999988765432 11 4578899888876643 1257887
Q ss_pred EE
Q psy2376 481 LF 482 (896)
Q Consensus 481 l~ 482 (896)
+.
T Consensus 194 ~s 195 (322)
T PRK15068 194 FS 195 (322)
T ss_pred EE
Confidence 73
No 189
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=90.60 E-value=1.1 Score=50.36 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=49.8
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTEL 465 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~ 465 (896)
+.+.+.+... ++.++|.-.|.|.-|..+.+.. .+|+|+|.+++|++.+++.. -+++++++++..+.
T Consensus 188 ~~v~~~~~~~----~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 188 EWACEVTQGS----KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHhhcC----CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 4444444432 2359999999999999888875 38999999999999997631 13688998887654
No 190
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.56 E-value=0.46 Score=48.71 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=42.9
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
-+++++.+... +++.++|.-+|.|..+..++++ ..+|+|+|+++.+++.++++
T Consensus 19 ~~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 19 HSAVREAVKTV---APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDM 71 (195)
T ss_pred hHHHHHHhccC---CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHH
Confidence 35666666654 3679999999999999999985 35899999999999988653
No 191
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.54 E-value=0.58 Score=51.85 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=69.3
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+|.+++|+-.|-|.-|..++++-.+ +|+|+|+.|.|++..++. .+++++.++++-.++...+ ...|=|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-----~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-----GVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-----ccCCEE
Confidence 5999999999999999999998533 499999999999988752 4677889999887766543 358999
Q ss_pred EEecccCccccCCCCCCc
Q psy2376 481 LFDLGISSNQINNELRGF 498 (896)
Q Consensus 481 l~dlG~ss~q~~~~~rgf 498 (896)
++++=-|++|+......-
T Consensus 261 im~~p~~a~~fl~~A~~~ 278 (341)
T COG2520 261 IMGLPKSAHEFLPLALEL 278 (341)
T ss_pred EeCCCCcchhhHHHHHHH
Confidence 999988888877654433
No 192
>KOG2904|consensus
Probab=90.15 E-value=0.71 Score=48.76 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=47.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccCh
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCF 462 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~ 462 (896)
+....|...|.|--|..+|..++ +++++|+|+.+.|+..|.+. ..+|+..+|-.+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 45899999999999999999996 79999999999999988652 468888876644
No 193
>PRK01581 speE spermidine synthase; Validated
Probab=90.15 E-value=0.87 Score=50.84 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=54.5
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----------cCCCeEEEccChhcHHHHHHhcCCCc
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----------TDSRFSIIHNCFTELDIILKKYNIKK 476 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (896)
+.+++.-.|.|+-...+++. ++..+|.++|+|++.++.|++. .++|++++.++-.+ ++++. -.+
T Consensus 152 krVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~---fL~~~-~~~ 226 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE---FLSSP-SSL 226 (374)
T ss_pred CEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH---HHHhc-CCC
Confidence 57778888999988888875 4567999999999999999851 25789888776543 33332 236
Q ss_pred ccEEEEec
Q psy2376 477 IDGILFDL 484 (896)
Q Consensus 477 ~d~il~dl 484 (896)
+|.|+.|+
T Consensus 227 YDVIIvDl 234 (374)
T PRK01581 227 YDVIIIDF 234 (374)
T ss_pred ccEEEEcC
Confidence 99999993
No 194
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=90.05 E-value=1.9 Score=51.39 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=37.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCC-------CcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGK-------KGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~-------~~~~~~~D~d~~a~~~~~~~ 450 (896)
...++|-++|.|+=..+++++.+. ...++|+|+|+.+++.++..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 458999999999999999988742 25789999999999998764
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=89.98 E-value=0.4 Score=49.34 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=56.3
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc------ccCCCeEEEccChhcHHHHHHhcCCCccc
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK------ITDSRFSIIHNCFTELDIILKKYNIKKID 478 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~d 478 (896)
+.|+.++|++.|.|.-+..=+++- -.+|+.++.||..++.|+- +++.+++++++.-.+ .+++++-..+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e---~V~~~~D~sfD 207 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE---VVKDFDDESFD 207 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---HHhcCCccccc
Confidence 459999999999999998888873 2399999999999998853 345678888886544 44444445789
Q ss_pred EEEE
Q psy2376 479 GILF 482 (896)
Q Consensus 479 ~il~ 482 (896)
+|+=
T Consensus 208 aIiH 211 (287)
T COG2521 208 AIIH 211 (287)
T ss_pred eEee
Confidence 9874
No 196
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.97 E-value=0.55 Score=55.25 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=59.8
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc--cCCCeEEEccChhcHHHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI--TDSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~--~~~~~~~~~~~~~~~~~~l 469 (896)
...+++.+... +++.++|.-+|.|.++..++++. .+|+|+|.++++++.+++. ..+++++++.+..+.. +
T Consensus 26 ~~~il~~l~~~---~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~--~ 97 (475)
T PLN02336 26 RPEILSLLPPY---EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPD--L 97 (475)
T ss_pred hhHHHhhcCcc---CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccc--c
Confidence 34555555543 47899999999999999999874 4899999999999887643 2356778777764321 1
Q ss_pred HhcCCCcccEEEEecc
Q psy2376 470 KKYNIKKIDGILFDLG 485 (896)
Q Consensus 470 ~~~~~~~~d~il~dlG 485 (896)
. ..-.++|.|+.+..
T Consensus 98 ~-~~~~~fD~I~~~~~ 112 (475)
T PLN02336 98 N-ISDGSVDLIFSNWL 112 (475)
T ss_pred C-CCCCCEEEEehhhh
Confidence 1 11135888887764
No 197
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=89.64 E-value=0.58 Score=50.77 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=48.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-cCCCeEE-EccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-TDSRFSI-IHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
++..++|.-+|.|==|-+-++. + -.+++|+|+||.|++.|++. ..+.+.. ++...-+.++... .+++|.|+.|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~---~~~~DvIVAN 236 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE---NGPFDVIVAN 236 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc---cCcccEEEeh
Confidence 3899999999999877777765 3 35899999999999999763 2233432 2222222222221 1368888887
Q ss_pred c
Q psy2376 484 L 484 (896)
Q Consensus 484 l 484 (896)
.
T Consensus 237 I 237 (300)
T COG2264 237 I 237 (300)
T ss_pred h
Confidence 6
No 198
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=89.45 E-value=0.55 Score=52.26 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=35.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT 451 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~ 451 (896)
++..++|..+|.|||...-... .-.+++|+|+++++++.|++++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHH
Confidence 5889999999999999999886 3469999999999999998764
No 199
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=89.37 E-value=0.82 Score=48.81 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccCC-------------
Q psy2376 804 ITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS------------- 862 (896)
Q Consensus 804 ~~~~el~~~~~~~l~~--------~~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~------------- 862 (896)
|++.|+++.+.+.+.. ..+.+|+++++|+||++|-=...+.+++|.++|||++||=.--
T Consensus 1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~ 80 (249)
T TIGR00486 1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIK 80 (249)
T ss_pred CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCcccCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCH
Confidence 4567777777776643 1346778889999999999999999999999999999872211
Q ss_pred chHHHHHHHcCCeEEEeCChh
Q psy2376 863 ESTVYISRESGVAYFAAGHHA 883 (896)
Q Consensus 863 ~h~~~~a~~~g~~li~~gH~~ 883 (896)
......+.++|++++.+ |.+
T Consensus 81 ~~~~~~li~~~I~vy~~-Ht~ 100 (249)
T TIGR00486 81 PGRLKILLQNDISLYSA-HTN 100 (249)
T ss_pred HHHHHHHHHCCCeEEEe-ecc
Confidence 11145677889998876 643
No 200
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=89.37 E-value=1.2 Score=46.67 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=35.1
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG 447 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~ 447 (896)
+++.++|.-+|.|-++..|+++ ...|+|+|+.+.|++.+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQF 75 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHH
Confidence 4789999999999999999985 45899999999999976
No 201
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.30 E-value=0.9 Score=49.63 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=35.7
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
++.++|.-+|.|..+..++++ ..+|+|+|.++++++.+++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~ 161 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEI 161 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHH
Confidence 458999999999999999885 36899999999999987653
No 202
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=1.8 Score=44.47 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=72.4
Q ss_pred cccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChh
Q psy2376 388 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFT 463 (896)
Q Consensus 388 ~~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~ 463 (896)
...|.-.+++.|.++ |+..+++.-.|.|.+|.-+.+.. ++|+++|++++-.+.|++.+ -++++++|++=+
T Consensus 57 ~P~~vA~m~~~L~~~---~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~ 130 (209)
T COG2518 57 APHMVARMLQLLELK---PGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS 130 (209)
T ss_pred CcHHHHHHHHHhCCC---CCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc
Confidence 345777788888886 49999999999999997666665 39999999999988887631 234877777531
Q ss_pred -cHHHHHHhcCCCcccEEEEecccCcc------ccCCCCCC
Q psy2376 464 -ELDIILKKYNIKKIDGILFDLGISSN------QINNELRG 497 (896)
Q Consensus 464 -~~~~~l~~~~~~~~d~il~dlG~ss~------q~~~~~rg 497 (896)
-.+ ...++|.|+..-++... ||....|-
T Consensus 131 ~G~~------~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrl 165 (209)
T COG2518 131 KGWP------EEAPYDRIIVTAAAPEVPEALLDQLKPGGRL 165 (209)
T ss_pred cCCC------CCCCcCEEEEeeccCCCCHHHHHhcccCCEE
Confidence 111 11378999999999876 77776653
No 203
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=89.03 E-value=0.46 Score=43.27 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=27.5
Q ss_pred CChhHHHHHHHcCCCc--EEEEEeCCH---HHHHHhhc-ccCCCeEEEccChhcHHHHHHhcCCCcccEEEEecc
Q psy2376 417 QGGHSCKILERLGKKG--RLIAIDKDT---ESVSLGNK-ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 417 ~Gghs~~ll~~~~~~~--~~~~~D~d~---~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG 485 (896)
.|.=|..+++.+.+++ +++++|.++ .+.+..++ ...++++++++++.+.-..+. ..++|.+.+|-+
T Consensus 7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iDg~ 78 (106)
T PF13578_consen 7 SGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEES-
T ss_pred cccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEECCC
Confidence 7777888998887765 799999999 44444443 256789999999977655454 237999999975
No 204
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=88.89 E-value=0.78 Score=50.10 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=44.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
+++.++|.-.|.|==+.+-++. + -.+|+|+|+||.|++.|++. ..++++.. ...+.. -.++|.|
T Consensus 161 ~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~-------~~~~dlv 229 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLV-------EGKFDLV 229 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTC-------CS-EEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecccc-------cccCCEE
Confidence 4789999999999777665554 4 35899999999999999763 34555542 111111 1367778
Q ss_pred EEecc
Q psy2376 481 LFDLG 485 (896)
Q Consensus 481 l~dlG 485 (896)
+.|+-
T Consensus 230 vANI~ 234 (295)
T PF06325_consen 230 VANIL 234 (295)
T ss_dssp EEES-
T ss_pred EECCC
Confidence 77764
No 205
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=88.74 E-value=0.15 Score=45.71 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=33.1
Q ss_pred EEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 411 IDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 411 vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+|.=+|.|..+..+++++ +..++.|+|+++.+++.++++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~ 39 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARER 39 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCC
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 478899999999999998 678999999999999888764
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=88.65 E-value=1.1 Score=55.46 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=55.7
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cC-CCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TD-SRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
++.++|+-.|.|+-|...++. + ..+|+++|+++.|++.+++. .+ +++++++++.-+ ++++.+ +++|.|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~---~l~~~~-~~fDlI 612 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA---WLKEAR-EQFDLI 612 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH---HHHHcC-CCcCEE
Confidence 789999999999999999985 2 34799999999999999763 22 578999888533 333322 369999
Q ss_pred EEe
Q psy2376 481 LFD 483 (896)
Q Consensus 481 l~d 483 (896)
+.|
T Consensus 613 ilD 615 (702)
T PRK11783 613 FID 615 (702)
T ss_pred EEC
Confidence 998
No 207
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=88.45 E-value=1.7 Score=48.02 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=52.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc------cCCCeEEEcc-ChhcHHHHHHhcCCCccc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI------TDSRFSIIHN-CFTELDIILKKYNIKKID 478 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~------~~~~~~~~~~-~~~~~~~~l~~~~~~~~d 478 (896)
++..++|.-.|.|+=...+..+. ++.+++|+|+|++|++.|++. ..+|+++++. +-.++.+-+.. .-+++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~-~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH-KNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc-cCCceE
Confidence 46789999999998888888776 467999999999999999753 2457777643 33333322211 112577
Q ss_pred EEEEe
Q psy2376 479 GILFD 483 (896)
Q Consensus 479 ~il~d 483 (896)
.|+-|
T Consensus 192 livcN 196 (321)
T PRK11727 192 ATLCN 196 (321)
T ss_pred EEEeC
Confidence 77765
No 208
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=88.27 E-value=0.9 Score=47.30 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=35.1
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG 447 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~ 447 (896)
+++.++|.-+|.|.++..|+++ ...|+|+|+.+.|++.+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQF 72 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHH
Confidence 4789999999999999999985 35799999999999985
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=88.20 E-value=2.6 Score=42.55 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=64.2
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcH
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTEL 465 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~ 465 (896)
+.+-+.++|.+. .-+|..++|+-.|.|.=...=|++- -.+++.+|+|.+|....++. ...+.++++.+=.
T Consensus 29 VREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-- 103 (187)
T COG0742 29 VREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-- 103 (187)
T ss_pred HHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--
Confidence 455566777762 1269999999999999999999985 35899999999999877652 2477777666543
Q ss_pred HHHHHhcCCC-cccEEEEe
Q psy2376 466 DIILKKYNIK-KIDGILFD 483 (896)
Q Consensus 466 ~~~l~~~~~~-~~d~il~d 483 (896)
..|+..+-. ++|.|.+|
T Consensus 104 -~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 104 -RALKQLGTREPFDLVFLD 121 (187)
T ss_pred -HHHHhcCCCCcccEEEeC
Confidence 555555443 48888887
No 210
>KOG3191|consensus
Probab=87.82 E-value=2.5 Score=42.15 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=57.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
..++++.-.|.|--|.++.+..+|+....+.|+.|.|.+.+.+- -..++..++.++. .-|+. ++||.++||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~---~~l~~---~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL---SGLRN---ESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH---hhhcc---CCccEEEEC
Confidence 57999999999999999999999999999999999999988653 2344667777652 22222 479999997
Q ss_pred c
Q psy2376 484 L 484 (896)
Q Consensus 484 l 484 (896)
=
T Consensus 118 P 118 (209)
T KOG3191|consen 118 P 118 (209)
T ss_pred C
Confidence 3
No 211
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=87.79 E-value=1.3 Score=46.20 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=36.6
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 409 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 409 ~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
.++|.-+|.|+.+..++++. ++++++|+|.+++.++.++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~ 42 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRER 42 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 57999999999999999988 467999999999999988764
No 212
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=87.79 E-value=1.8 Score=47.90 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=52.9
Q ss_pred HhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhh---cc--cCCCeEEEccChhcHHHHH
Q psy2376 395 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN---KI--TDSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 395 ~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~---~~--~~~~~~~~~~~~~~~~~~l 469 (896)
++..+... +++.++|..+|+|.++..+++.. + .+|+|+|.++..+..++ +. ...++.+...+.++++.
T Consensus 113 ~l~~l~~~---~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-- 185 (314)
T TIGR00452 113 VLPHLSPL---KGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-- 185 (314)
T ss_pred HHHhcCCC---CCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--
Confidence 44545443 48899999999999999998874 3 38999999998876543 22 13567777766655532
Q ss_pred HhcCCCcccEEEE
Q psy2376 470 KKYNIKKIDGILF 482 (896)
Q Consensus 470 ~~~~~~~~d~il~ 482 (896)
. ..+|.|+.
T Consensus 186 --~--~~FD~V~s 194 (314)
T TIGR00452 186 --L--YAFDTVFS 194 (314)
T ss_pred --C--CCcCEEEE
Confidence 1 24677765
No 213
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=87.40 E-value=1.9 Score=45.26 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=60.9
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCC-CeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDS-RFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
.+++|.-||.|.|...++++. |+.-.+|+++-...+..+.+. .+- ++.+++.+=.++.+++...| .+|+|.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~--sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDG--SLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCC--CeeEEEEE
Confidence 599999999999999999998 566899999999998877542 233 89999998888877776543 68999887
Q ss_pred c
Q psy2376 484 L 484 (896)
Q Consensus 484 l 484 (896)
+
T Consensus 127 F 127 (227)
T COG0220 127 F 127 (227)
T ss_pred C
Confidence 5
No 214
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=87.18 E-value=3.9 Score=48.77 Aligned_cols=147 Identities=10% Similarity=0.165 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcC-----
Q psy2376 4 HKTFITISSITLFSRITGLFREILFAR--VFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRG----- 76 (896)
Q Consensus 4 ~k~a~~l~i~tlls~llG~v~~i~la~--~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~----- 76 (896)
.+.+...+..+++-.++.=-...+++. ....++ -|.|.++.++=.++..++-. -+-...=-++++...+++
T Consensus 256 l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~-QGvY~lv~N~GSLvaR~lF~-PiEEs~~~~Fsk~l~~~~~~~~~ 333 (549)
T PF04506_consen 256 LSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFED-QGVYALVSNYGSLVARLLFQ-PIEESSRLYFSKLLSRDNSKKKQ 333 (549)
T ss_pred HHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHH-hhHHHHHhhHHHHHHHHHhC-cHHHHHHHHHHHHhcccCchhhc
Confidence 344444455555555555555555555 455543 35788887766665544432 244443334444433221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 77 ----NIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILN 152 (896)
Q Consensus 77 ----~~~~~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~ 152 (896)
.+++.+.+...+.+...+|+++..++.-.++.++.++++.-+.+++ +...++.-+..+|+++++++..++.+
T Consensus 334 ~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~----~~~~l~~yc~yi~~la~NGi~EaF~~ 409 (549)
T PF04506_consen 334 PQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTS----APSLLRAYCYYIPFLAINGITEAFVF 409 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCC----chHHHHHHHHHHHHHHHccHHHHHHH
Confidence 2456667777778888888888888888888888887543333444 46778888899999999999999888
Q ss_pred hhCc
Q psy2376 153 IWSQ 156 (896)
Q Consensus 153 ~~~~ 156 (896)
+--.
T Consensus 410 s~a~ 413 (549)
T PF04506_consen 410 SVAS 413 (549)
T ss_pred HhCC
Confidence 7655
No 215
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=86.51 E-value=2.2 Score=46.10 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=53.9
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--------CCCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--------DSRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
+.++|.-.|.|+-+..++++. +..++.++|+|++.++.+++.+ +.|++++.++- .+++++. -.++|.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~---~~~l~~~-~~~yDv 148 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG---FKFLADT-ENTFDV 148 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch---HHHHHhC-CCCccE
Confidence 488999999999999999875 4568999999999999987632 35788777543 3334332 136999
Q ss_pred EEEec
Q psy2376 480 ILFDL 484 (896)
Q Consensus 480 il~dl 484 (896)
|+.|.
T Consensus 149 Ii~D~ 153 (270)
T TIGR00417 149 IIVDS 153 (270)
T ss_pred EEEeC
Confidence 99873
No 216
>KOG0820|consensus
Probab=86.24 E-value=2.7 Score=44.53 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=60.7
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELD 466 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~ 466 (896)
.+.+++.-.. +|.++++.|-=|.|.-|..+||+- .+|+|+++||-.++.-+++ ..++++++++.|
T Consensus 47 ~~~I~~ka~~---k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---- 116 (315)
T KOG0820|consen 47 IDQIVEKADL---KPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---- 116 (315)
T ss_pred HHHHHhccCC---CCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc----
Confidence 3444444444 469999999999999999999984 5899999999998877665 247899999988
Q ss_pred HHHHhcCCCcccEEEEec
Q psy2376 467 IILKKYNIKKIDGILFDL 484 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dl 484 (896)
++ ...+..|+++-|+
T Consensus 117 --lK-~d~P~fd~cVsNl 131 (315)
T KOG0820|consen 117 --LK-TDLPRFDGCVSNL 131 (315)
T ss_pred --cc-CCCcccceeeccC
Confidence 22 2344577777765
No 217
>PRK10799 metal-binding protein; Provisional
Probab=85.91 E-value=3.3 Score=44.12 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhHhCCC--------cEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEcc-------------CCc
Q psy2376 805 TIKDLFHHITRKIGKK--------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGE-------------ISE 863 (896)
Q Consensus 805 ~~~el~~~~~~~l~~~--------~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd-------------~~~ 863 (896)
+..|+.+.+.+.+... .+.+++. ++|+||++|-=...+.+++|.++|||++||=. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~wd~~Gl~v~~~-~~v~~I~~alD~t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~ 80 (247)
T PRK10799 2 KNTELEQLINEKLNSAAISDYAPNGLQVEGR-ETVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKR 80 (247)
T ss_pred cHHHHHHHHHhhcCHhhhccCCCceeEeCCc-ccccEEEEEeCCCHHHHHHHHHCCCCEEEECCchhccCCCccccchHH
Confidence 4567777777666542 2234443 68999999999999999999999999999833 112
Q ss_pred hHHHHHHHcCCeEEEeCChh
Q psy2376 864 STVYISRESGVAYFAAGHHA 883 (896)
Q Consensus 864 h~~~~a~~~g~~li~~gH~~ 883 (896)
.....+.++++++... |.+
T Consensus 81 ~~~~~li~~~i~vy~~-Htn 99 (247)
T PRK10799 81 NRLKTLLANDINLYGW-HLP 99 (247)
T ss_pred HHHHHHHHCCCeEEEE-ecc
Confidence 2456678899999876 543
No 218
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.74 E-value=2 Score=39.57 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=54.8
Q ss_pred cCCChhHHHHHHHcCCCc-EEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEecc
Q psy2376 415 FGQGGHSCKILERLGKKG-RLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 415 ~G~Gghs~~ll~~~~~~~-~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG 485 (896)
+|.|..+..+++.+.+++ +|+.+|.|++..+..++. .+.+++++..+.+. |++.++.+.|.++...+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---~~~~i~gd~~~~~~-l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---GVEVIYGDATDPEV-LERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---TSEEEES-TTSHHH-HHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---ccccccccchhhhH-HhhcCccccCEEEEccC
Confidence 699999999999987777 899999999998887653 37899999988764 56778889999998876
No 219
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=85.40 E-value=2.2 Score=50.44 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=58.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----cCCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
++.+.+|.-+|.|+|+..++++. |+..++|+|+....+..+.+. --+++.+++++...+.+++++. .+|.|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~---sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNN---SLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcc---cccEEE
Confidence 47799999999999999999998 567899999999987766432 1257888888877676666432 588887
Q ss_pred Eec
Q psy2376 482 FDL 484 (896)
Q Consensus 482 ~dl 484 (896)
+++
T Consensus 423 i~F 425 (506)
T PRK01544 423 ILF 425 (506)
T ss_pred EEC
Confidence 764
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=85.30 E-value=3.4 Score=44.07 Aligned_cols=73 Identities=29% Similarity=0.355 Sum_probs=51.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc--------cCCCeEEEccChhcHHHHHHhcCCCccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI--------TDSRFSIIHNCFTELDIILKKYNIKKID 478 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~d 478 (896)
..+.|=+ .|.|+-+..+++.. +..++..+|+||+.++.+++. .++|+++++++= .+++++..-.+.|
T Consensus 78 ~~VLiiG-gG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg---~~~l~~~~~~~yD 152 (246)
T PF01564_consen 78 KRVLIIG-GGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG---RKFLKETQEEKYD 152 (246)
T ss_dssp -EEEEEE-STTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH---HHHHHTSSST-EE
T ss_pred CceEEEc-CCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh---HHHHHhccCCccc
Confidence 4555444 88899999998764 456999999999999999863 257999987764 3444443322699
Q ss_pred EEEEec
Q psy2376 479 GILFDL 484 (896)
Q Consensus 479 ~il~dl 484 (896)
.|+.|+
T Consensus 153 vIi~D~ 158 (246)
T PF01564_consen 153 VIIVDL 158 (246)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999998
No 221
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=84.49 E-value=2.1 Score=45.53 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=45.3
Q ss_pred EEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccCC--------------chHHHHHHHcCCeEEEeCChh
Q psy2376 822 IVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS--------------ESTVYISRESGVAYFAAGHHA 883 (896)
Q Consensus 822 ~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~--------------~h~~~~a~~~g~~li~~gH~~ 883 (896)
+.+|+++++|+||++|-=...+.+++|.+.|||++||=.-- +.....+.++|+++..+ |.+
T Consensus 23 l~vg~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~-Ht~ 97 (241)
T PF01784_consen 23 LQVGDPEQEVKKVLVALDATPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSA-HTN 97 (241)
T ss_dssp EEES-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEE-SHH
T ss_pred eEECcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEe-ccc
Confidence 46888999999999999999999999999999999983331 11235677899999987 754
No 222
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=84.30 E-value=1.5 Score=42.14 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=35.9
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 409 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 409 ~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+++|+-.|.|-+|..+++.. +++++++||.||+..+..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 47999999999999999886 567999999999999887653
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=84.18 E-value=2.3 Score=45.83 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=59.2
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDI 467 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~ 467 (896)
...+++++.+... ++..++|.=-|.|--|..|+++. .+|+++|+|++..+.-++++ .+|++++++++-.++.
T Consensus 17 ~~~~~Iv~~~~~~---~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 17 NIADKIVDALDLS---EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHTCG---TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHhcCCC---CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 3567777877765 48999999999999999999986 58999999999988877653 5899999999866543
No 224
>PRK04148 hypothetical protein; Provisional
Probab=83.97 E-value=2.9 Score=39.95 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=34.2
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+..++|.-+|.|.+....|.+.+ ..|+|+|++++|.+.+++.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh
Confidence 57899999999986666666653 5899999999999988653
No 225
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=83.58 E-value=1.8 Score=46.69 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=39.2
Q ss_pred ccCCCh---hHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc------cCCCeEEEccChhcHHHHHHhcCCCcccEEEEec
Q psy2376 414 TFGQGG---HSCKILERLGKKGRLIAIDKDTESVSLGNKI------TDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 414 T~G~Gg---hs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dl 484 (896)
-.|.|- =+..|.++++++.++.++|+|++|.+.++++ ..++.+++.++..+...-++ .+|.|++--
T Consensus 126 FIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~-----~~DvV~lAa 200 (276)
T PF03059_consen 126 FIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLK-----EYDVVFLAA 200 (276)
T ss_dssp EE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------SEEEE-T
T ss_pred EEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccc-----cCCEEEEhh
Confidence 467774 2445555666778999999999999999874 36889999988877654333 367777654
Q ss_pred ccC
Q psy2376 485 GIS 487 (896)
Q Consensus 485 G~s 487 (896)
=|.
T Consensus 201 lVg 203 (276)
T PF03059_consen 201 LVG 203 (276)
T ss_dssp T-S
T ss_pred hcc
Confidence 443
No 226
>KOG4589|consensus
Probab=83.50 E-value=3.5 Score=41.23 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=58.1
Q ss_pred hcccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccCh-hc-
Q psy2376 387 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCF-TE- 464 (896)
Q Consensus 387 l~~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~-~~- 464 (896)
+|...++|=...+++ +++++||-+--|--|+---++.+|+|.|+|+|+++-.= -..++++.+++ .+
T Consensus 55 FKLiEindKy~~l~p-----~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------~~Ga~~i~~~dvtdp 122 (232)
T KOG4589|consen 55 FKLIEINDKYRFLRP-----EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------PEGATIIQGNDVTDP 122 (232)
T ss_pred hhheeehhhccccCC-----CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------CCCcccccccccCCH
Confidence 344555666666665 88999999999999999999999999999999986541 23355555542 21
Q ss_pred --HHHHHHhcCCCcccEEEEec
Q psy2376 465 --LDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 465 --~~~~l~~~~~~~~d~il~dl 484 (896)
..++.+.+-..+||.||=|.
T Consensus 123 ~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 123 ETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred HHHHHHHHhCCCCcccEEEecc
Confidence 12222222224688887553
No 227
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=83.19 E-value=4.2 Score=42.71 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=52.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
++..++|.-.|.|..+..+++. ..+++++|.++++++.+++. ...++.++..+...+.. ..+ +++|.|+.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA---EHP-GQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh---hcC-CCccEEEE
Confidence 4788999999999999888875 35799999999999988754 23356777776665532 111 36888887
Q ss_pred ec
Q psy2376 483 DL 484 (896)
Q Consensus 483 dl 484 (896)
..
T Consensus 121 ~~ 122 (233)
T PRK05134 121 ME 122 (233)
T ss_pred hh
Confidence 43
No 228
>PLN02823 spermine synthase
Probab=82.92 E-value=3.6 Score=45.90 Aligned_cols=71 Identities=27% Similarity=0.276 Sum_probs=52.7
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--------CCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 409 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--------DSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 409 ~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
.++-.=.|.|+-...+++.. +..+|..+|+|++.++.+++.+ ++|++++.++-.+ ++++. -+++|.|
T Consensus 106 ~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~---~L~~~-~~~yDvI 180 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA---ELEKR-DEKFDVI 180 (336)
T ss_pred EEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH---HHhhC-CCCccEE
Confidence 45566678888888899864 4568999999999999998642 4788888766433 34332 2479999
Q ss_pred EEec
Q psy2376 481 LFDL 484 (896)
Q Consensus 481 l~dl 484 (896)
+.|+
T Consensus 181 i~D~ 184 (336)
T PLN02823 181 IGDL 184 (336)
T ss_pred EecC
Confidence 9996
No 229
>PLN02672 methionine S-methyltransferase
Probab=82.80 E-value=1.9 Score=55.01 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=57.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc--c------------------CCCeEEEccChhcHH
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI--T------------------DSRFSIIHNCFTELD 466 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~--~------------------~~~~~~~~~~~~~~~ 466 (896)
++.++|...|.|-=+..++++. +.++|+|+|++++|++.|++. . .+|+++++++.-+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-- 195 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-- 195 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh--
Confidence 4689999999999999999998 457999999999999988642 1 1479999888632
Q ss_pred HHHHhcCCCcccEEEEecccCccccCCCC
Q psy2376 467 IILKKYNIKKIDGILFDLGISSNQINNEL 495 (896)
Q Consensus 467 ~~l~~~~~~~~d~il~dlG~ss~q~~~~~ 495 (896)
.++..+ .++|.|+=| -+++.+++
T Consensus 196 -~~~~~~-~~fDlIVSN----PPYI~~~e 218 (1082)
T PLN02672 196 -YCRDNN-IELDRIVGC----IPQILNPN 218 (1082)
T ss_pred -hccccC-CceEEEEEC----CCcCCCcc
Confidence 222211 146777664 34555443
No 230
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=81.66 E-value=5.4 Score=44.13 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=62.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCC---CcEEEEEeCCHHHHHHhhcccC----CCe--EEEccChhcHHHHHHhcCC-C
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGK---KGRLIAIDKDTESVSLGNKITD----SRF--SIIHNCFTELDIILKKYNI-K 475 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~---~~~~~~~D~d~~a~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~~~-~ 475 (896)
++..+||.-.|+|-+|..||+.+.+ ..+.+++|++.++++.+.+... ..+ .-+++.|.+....++.... .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3678999999999999999999853 3578999999999998864322 234 4589999888777754211 1
Q ss_pred cccEEEEecccCccccCCCC
Q psy2376 476 KIDGILFDLGISSNQINNEL 495 (896)
Q Consensus 476 ~~d~il~dlG~ss~q~~~~~ 495 (896)
.-. +++=+|=|---++.+|
T Consensus 156 ~~r-~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 156 RPT-TILWLGSSIGNFSRPE 174 (319)
T ss_pred Ccc-EEEEeCccccCCCHHH
Confidence 223 5556886655555444
No 231
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=80.82 E-value=77 Score=33.18 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 210 KKMGPSVFSVFAAQISLMLNTN-IASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKAR 274 (896)
Q Consensus 210 ~~glP~~l~~~~~~i~~~vd~~-i~s~lg~~ava~~~~A~~l~~l~~~li~~ais~~l~P~lS~~~ 274 (896)
|-+...++++.+..+...+-.. +...+|+++.|.|+.+..+.++...+...+++++..-.+++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~ 68 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYK 68 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 3444555555555555444444 4446788888888888888887765557777877777777664
No 232
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=79.63 E-value=4.1 Score=46.34 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=43.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTE 464 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~ 464 (896)
+..++|+-.|.|.=+..++...+ ..+|++.|+|++|++.+++.. -++.++++++..+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~ 118 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA 118 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence 46899999999999999988875 358999999999999987631 1234566655533
No 233
>KOG1540|consensus
Probab=79.52 E-value=7.1 Score=41.17 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=64.9
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCC-----cEEEEEeCCHHHHHHhhcc-----c--CCCeEEE
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKK-----GRLIAIDKDTESVSLGNKI-----T--DSRFSII 458 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~-----~~~~~~D~d~~a~~~~~~~-----~--~~~~~~~ 458 (896)
+.+-.++.|.+. ++..++|..-|.|--+..|+++.+.. .+|...|+.|+.++.++++ + ..++..+
T Consensus 88 WKd~~v~~L~p~---~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 88 WKDMFVSKLGPG---KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWV 164 (296)
T ss_pred HHHHhhhccCCC---CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEE
Confidence 434455666664 48899999999999999999998653 8999999999999888654 2 2458888
Q ss_pred ccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 459 HNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 459 ~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
.++=+.++ ..+. ..|....-+|+
T Consensus 165 ~~dAE~Lp--Fdd~---s~D~yTiafGI 187 (296)
T KOG1540|consen 165 EGDAEDLP--FDDD---SFDAYTIAFGI 187 (296)
T ss_pred eCCcccCC--CCCC---cceeEEEecce
Confidence 88876665 2222 46666666665
No 234
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=79.38 E-value=4.8 Score=42.13 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=37.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
++..++|.-+|+|-=|.-+++. +..|+|+|.++++++.|+..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~h 100 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLH 100 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHh
Confidence 4889999999999999998886 37999999999999999753
No 235
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=79.22 E-value=4.6 Score=43.11 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=64.6
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHH
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDI 467 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~ 467 (896)
..++.+++...+. +++.++..--|.|.=|..|+++. .+|+|+.+|+.-.+.-++.. .+|++++++++-.++
T Consensus 17 ~v~~kIv~~a~~~---~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d- 89 (259)
T COG0030 17 NVIDKIVEAANIS---PGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD- 89 (259)
T ss_pred HHHHHHHHhcCCC---CCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-
Confidence 3567788888776 38999999999999999999986 37999999999998887653 589999999874432
Q ss_pred HHHhcCCCcccEEEEec
Q psy2376 468 ILKKYNIKKIDGILFDL 484 (896)
Q Consensus 468 ~l~~~~~~~~d~il~dl 484 (896)
+.+.. ..+-++-||
T Consensus 90 -~~~l~--~~~~vVaNl 103 (259)
T COG0030 90 -FPSLA--QPYKVVANL 103 (259)
T ss_pred -chhhc--CCCEEEEcC
Confidence 11110 245566665
No 236
>KOG1540|consensus
Probab=79.20 E-value=2.4 Score=44.56 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHhhcCCC
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNTKI 641 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~~~~~ 641 (896)
..+++|+.|.++||||||...+-|--.|..-+++|.+.+...
T Consensus 192 h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 192 HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 346788999999999999999999999999999999987754
No 237
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=79.06 E-value=6 Score=44.86 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=52.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+-.++|+-.|.|--+...+++.+.-.+|++.|++++|++..++.. .+++++++.+..++.... + .++|.|.+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~-~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---N-RKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---C-CCCCEEEe
Confidence 358999999999999999998643458999999999999887631 135778877665543321 1 13666666
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
|
T Consensus 121 D 121 (374)
T TIGR00308 121 D 121 (374)
T ss_pred C
Confidence 6
No 238
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=78.96 E-value=5.5 Score=41.78 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=35.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
+++.+++-=+|.|.+...|+++ .-+|+|+|..+.|++.+.+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHH
Confidence 3678899999999999999996 3479999999999999754
No 239
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=77.67 E-value=4.5 Score=42.76 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccCh
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCF 462 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~ 462 (896)
.+.+||.-=|.|..+.++++++ |+.+++.+|. |+.++.+++ .+|++++-++|
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--~~rv~~~~gd~ 152 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE--ADRVEFVPGDF 152 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--TTTEEEEES-T
T ss_pred ccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--ccccccccccH
Confidence 5689999999999999999999 6889999999 889988877 78999999998
No 240
>KOG2864|consensus
Probab=77.42 E-value=17 Score=41.57 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=60.0
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2376 74 KRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNI 153 (896)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~~g~~~~~~~~~~a~~~l~Il~~~l~f~~l~~~~~~il~~ 153 (896)
++|.+++-..+...+.+...+|++++..+.-.++..+.++++..+.+++ ....+++-+..+|+++++++..|++++
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~----~~~lL~~YclYI~~lAiNGitEaF~~A 390 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGG----GSLLLSWYCLYIPFLAINGITEAFAFA 390 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCC----chHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455556666667777778888888888888889999888654334444 457788889999999999999999987
Q ss_pred hCc
Q psy2376 154 WSQ 156 (896)
Q Consensus 154 ~~~ 156 (896)
-..
T Consensus 391 ~~t 393 (530)
T KOG2864|consen 391 VAT 393 (530)
T ss_pred hcc
Confidence 633
No 241
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=77.12 E-value=0.72 Score=38.15 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=29.7
Q ss_pred HhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhc-cCCCcchHHHHHH
Q psy2376 522 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS-ITPITRTKQLVEI 568 (896)
Q Consensus 522 ~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~-~~~~~~t~~l~~~ 568 (896)
+|+.|.+||..+- -...+.|++|++.|+ .+|+.+..||.++
T Consensus 8 iN~as~~eL~~lp------gi~~~~A~~Iv~~R~~~G~f~s~~dL~~v 49 (65)
T PF12836_consen 8 INTASAEELQALP------GIGPKQAKAIVEYREKNGPFKSLEDLKEV 49 (65)
T ss_dssp TTTS-HHHHHTST------T--HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred CccCCHHHHHHcC------CCCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence 5899999998752 235788999999996 6799999999875
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=75.08 E-value=5.5 Score=38.40 Aligned_cols=45 Identities=22% Similarity=0.151 Sum_probs=38.0
Q ss_pred cCcEEEEEccCCChhHHHHHHHc---CCCcEEEEEeCCHHHHHHhhcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERL---GKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~---~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+...+||.--|.|.=|..+...+ .++.+|+|+|.|++..+.++++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHH
Confidence 57899999999999999998832 3568999999999998888654
No 243
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=74.68 E-value=3.6 Score=39.57 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHHHHHHhccccCceEEEEeec-----chhHHHHHHHHhhcC
Q psy2376 602 SIALKIGFKKLNIKGRIVVISFH-----SLEDRIVKNFINFNT 639 (896)
Q Consensus 602 ~~~l~~~~~~l~~~g~~~visfh-----sledr~vk~~~~~~~ 639 (896)
-.+|+++.++|+|||+++|+.|. --|-.-|.+|++...
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 34567788889999999999997 357788888888643
No 244
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.47 E-value=6.8 Score=42.23 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=34.3
Q ss_pred CcEEEEEccCCChh--HHH--HHHHcCC----CcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGH--SCK--ILERLGK----KGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Ggh--s~~--ll~~~~~----~~~~~~~D~d~~a~~~~~~~ 450 (896)
+-.+.|+-+|.|.. |.+ +++..++ +.+|+|.|+|+++++.|++.
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 46899999999986 333 4455432 57999999999999999763
No 245
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=72.22 E-value=5.2 Score=44.09 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=35.2
Q ss_pred cCcEEEEEccCCChhHHHHHHHc------CCCcEEEEEeCCHHHHHHhhc
Q psy2376 406 INGIYIDATFGQGGHSCKILERL------GKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~------~~~~~~~~~D~d~~a~~~~~~ 449 (896)
++..++|-++|.|+=..+..+.+ .+...++|+|+|+.+...|+-
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~ 95 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL 95 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh
Confidence 47789999999999988888753 256799999999999988863
No 246
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=71.89 E-value=19 Score=37.25 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=51.4
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc----------c---CCCeEEEc
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----------T---DSRFSIIH 459 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~----------~---~~~~~~~~ 459 (896)
.++++.+... ++++++|.=-|.|.=..+..-..+ -.+.+|++++++..+.|++. + ..++++.+
T Consensus 32 ~~il~~~~l~---~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 32 SKILDELNLT---PDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHhCCC---CCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 4555666664 589999999999998777666663 34799999999998777531 1 35688999
Q ss_pred cChhcHH---HHHHhcCCCcccEEEEec
Q psy2376 460 NCFTELD---IILKKYNIKKIDGILFDL 484 (896)
Q Consensus 460 ~~~~~~~---~~l~~~~~~~~d~il~dl 484 (896)
++|-+-+ ..++ ..|.|+.|=
T Consensus 108 gdfl~~~~~~~~~s-----~AdvVf~Nn 130 (205)
T PF08123_consen 108 GDFLDPDFVKDIWS-----DADVVFVNN 130 (205)
T ss_dssp S-TTTHHHHHHHGH-----C-SEEEE--
T ss_pred cCccccHhHhhhhc-----CCCEEEEec
Confidence 9986543 2223 478888873
No 247
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=71.82 E-value=10 Score=39.63 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=48.2
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc---c-------------cCCCeEEEccChhcHHHHH
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK---I-------------TDSRFSIIHNCFTELDIIL 469 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~---~-------------~~~~~~~~~~~~~~~~~~l 469 (896)
+++.+++-=+|.|.+...|+++ +-.|+|+|..+.|++.+.+ + ..++++++.++|=+++.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~-- 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP-- 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG--
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh--
Confidence 4678888999999999999986 3589999999999998721 1 12567888888755442
Q ss_pred HhcCCCcccEEE
Q psy2376 470 KKYNIKKIDGIL 481 (896)
Q Consensus 470 ~~~~~~~~d~il 481 (896)
...+++|.|.
T Consensus 112 --~~~g~fD~iy 121 (218)
T PF05724_consen 112 --EDVGKFDLIY 121 (218)
T ss_dssp --SCHHSEEEEE
T ss_pred --hhcCCceEEE
Confidence 1222566654
No 248
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=71.67 E-value=3.9 Score=43.18 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHhhcC
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNT 639 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~~~ 639 (896)
..+++|+.+.++||||||++|+.|+.=+.-.++++...+.
T Consensus 134 d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~ 173 (238)
T COG2226 134 DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYY 173 (238)
T ss_pred CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHH
Confidence 6778899999999999999999999999888877766543
No 249
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=71.23 E-value=19 Score=39.20 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=54.9
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc--------cCCCeEEEccChhcHHHHHHhcCCCcccE
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI--------TDSRFSIIHNCFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 479 (896)
+.++=.=.|.||=++++++..+ ..++...|+|++.++.+++. .++|++++-++ -.+++++... ++|.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D---g~~~v~~~~~-~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD---GVEFLRDCEE-KFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc---HHHHHHhCCC-cCCE
Confidence 4566667899999999999974 67999999999999999873 15888876543 2344554433 6999
Q ss_pred EEEec
Q psy2376 480 ILFDL 484 (896)
Q Consensus 480 il~dl 484 (896)
|+.|.
T Consensus 153 Ii~D~ 157 (282)
T COG0421 153 IIVDS 157 (282)
T ss_pred EEEcC
Confidence 99995
No 250
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=71.08 E-value=9.9 Score=41.31 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=43.1
Q ss_pred hhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 396 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 396 l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
++.+... +++-++|.-+|.|-=+..+++.. |+.++.-.|+|..|++.|++.
T Consensus 151 l~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~N 201 (300)
T COG2813 151 LETLPPD---LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKN 201 (300)
T ss_pred HHhCCcc---CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHh
Confidence 3444443 36699999999999999999997 588999999999999999874
No 251
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=70.51 E-value=8.7 Score=47.54 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=35.9
Q ss_pred cEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 432 GRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 432 ~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
.+++|+|+|++|++.|++. ..+++++.++++.++..... .+.+|.|+-|
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~---~~~~d~IvtN 310 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP---KGPTGLVISN 310 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc---cCCCCEEEEC
Confidence 4799999999999999763 35678999999877643211 1246777776
No 252
>KOG2360|consensus
Probab=70.04 E-value=3.1 Score=46.20 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=67.1
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---c-CCCeEEEccChhcHHHHHHhcCCCcccEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T-DSRFSIIHNCFTELDIILKKYNIKKIDGIL 481 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~d~il 481 (896)
+++.++|.+.--|.-|..+..-..+.+|++|||+|++=.+.-+++ . ...++.+++.|-+. ......+.|..||
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t---~~~~~~~~v~~iL 289 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT---ATPEKFRDVTYIL 289 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC---CCcccccceeEEE
Confidence 589999999999998888888877789999999998876554432 1 23455667777664 2222345799999
Q ss_pred EecccCccccCCCCCCccCCCCCCccccCCCC
Q psy2376 482 FDLGISSNQINNELRGFSFLLDGPLDMRMDIT 513 (896)
Q Consensus 482 ~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~ 513 (896)
.|=|+|- -| =+.|||+++.
T Consensus 290 ~DpscSg-------Sg------m~~r~~~~~~ 308 (413)
T KOG2360|consen 290 VDPSCSG-------SG------MVSRQDEDPG 308 (413)
T ss_pred eCCCCCC-------Cc------cccceeeccC
Confidence 9999983 12 2678888875
No 253
>PRK00536 speE spermidine synthase; Provisional
Probab=69.48 E-value=11 Score=40.53 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=48.7
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc--------cCCCeEEEccChhcHHHHHHhcCCCcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI--------TDSRFSIIHNCFTELDIILKKYNIKKI 477 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (896)
|.++.|=+ =|.||=.+.+|+. +. +|.-.|+|++.++.+++. .+.|++++. .+++...+++
T Consensus 73 pk~VLIiG-GGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--------~~~~~~~~~f 140 (262)
T PRK00536 73 LKEVLIVD-GFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--------QLLDLDIKKY 140 (262)
T ss_pred CCeEEEEc-CCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--------hhhhccCCcC
Confidence 45565533 3778888899987 33 999999999999999872 368899885 1223222479
Q ss_pred cEEEEec
Q psy2376 478 DGILFDL 484 (896)
Q Consensus 478 d~il~dl 484 (896)
|.|+.|.
T Consensus 141 DVIIvDs 147 (262)
T PRK00536 141 DLIICLQ 147 (262)
T ss_pred CEEEEcC
Confidence 9999993
No 254
>PRK11524 putative methyltransferase; Provisional
Probab=69.44 E-value=6.7 Score=42.76 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=39.1
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+++.++..... +|++++|.-+|.|- |..-++++ +-+.||+|+|++..+.|+++
T Consensus 197 L~erlI~~~S~----~GD~VLDPF~GSGT-T~~AA~~l--gR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 197 LLKRIILASSN----PGDIVLDPFAGSFT-TGAVAKAS--GRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHhCC----CCCEEEECCCCCcH-HHHHHHHc--CCCEEEEeCCHHHHHHHHHH
Confidence 44445554443 59999999999875 44445555 45899999999999999775
No 255
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=68.43 E-value=20 Score=37.44 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhH
Q psy2376 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTE 70 (896)
Q Consensus 2 ~l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~ 70 (896)
+..|...+....++++.+..-+...++...+|++ ..|.|.++..+.....+++. .+++..+.|.++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~-~~g~y~~a~~l~~~~~~~~~-~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE-AVGIYSVAQRLASLPASLLS-SAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 3578889999999999999999999988878884 67899999988887764444 3689899998876
No 256
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=68.38 E-value=22 Score=36.08 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=37.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccC
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNC 461 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~ 461 (896)
||..++|.-+|.|---..|-+. ++.+.+|+|+|++.+..+-+ ..+..++++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~---rGv~Viq~D 63 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA---RGVSVIQGD 63 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH---cCCCEEECC
Confidence 3899999999988766555554 57899999999999877743 234455444
No 257
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=68.16 E-value=7.5 Score=39.93 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=35.4
Q ss_pred cchHHHhhhccccccccCcEEEEEccCCChhHH--HHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 390 LFLNEAINWLNIENERINGIYIDATFGQGGHSC--KILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 390 ~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~--~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
...+.++.++..+ ..-..-|+++|+|+--. .+|..- .-..|+|-|+|++|++.|++
T Consensus 38 Ei~qR~l~~l~~~---~p~tLyDPCCG~gyLLTVlGLLh~~-~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 38 EIFQRALHYLEGK---GPYTLYDPCCGSGYLLTVLGLLHRR-RLRRVYASDIDEDALELARK 95 (246)
T ss_dssp HHHHHHHCTSSS----S-EEEEETT-TTSHHHHHHHHHTGG-GEEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhhcCC---CCeeeeccCCCccHHHHHHHHhhhH-HHHhHhcccCCHHHHHHHHH
Confidence 3445566666553 24566799999887543 334332 23489999999999999976
No 258
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=67.98 E-value=12 Score=38.03 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTE 464 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~ 464 (896)
-+..+|.-+|+|-=|..|..+. .+|.++|+.+.|++.|+++. ..++++++..+.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~ 100 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPE 100 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC
Confidence 4678999999999999999997 38999999999999998763 2567777777644
No 259
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=66.71 E-value=13 Score=38.49 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=50.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc---CC-CeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT---DS-RFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+..++|...|.|.-+..+++.. .+++|+|.++++++.+++.. .. ++++.+.++.+... +. -.++|.|+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~-~~~~D~i~~ 118 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KG-AKSFDVVTC 118 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CC-CCCccEEEe
Confidence 6789999999999888877753 46999999999999887642 12 57777777655432 11 135788876
Q ss_pred e
Q psy2376 483 D 483 (896)
Q Consensus 483 d 483 (896)
+
T Consensus 119 ~ 119 (224)
T TIGR01983 119 M 119 (224)
T ss_pred h
Confidence 3
No 260
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=66.41 E-value=29 Score=37.84 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=51.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----c-CCCeEEEccC-hhcHHHHHHhcCCCccc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----T-DSRFSIIHNC-FTELDIILKKYNIKKID 478 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~-~~~~~~~~~~-~~~~~~~l~~~~~~~~d 478 (896)
.++.++|+-.=.||-|.+-+.. .-.+|+++|.+..|++.+++. + .++++++..+ |+.+.+ +++.+ ++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~~~~~--~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-LKKGG--RFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-HHHTT---EE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-HhcCC--CCC
Confidence 3789999999999999886653 334899999999999999763 2 3678888765 555654 45433 799
Q ss_pred EEEEe
Q psy2376 479 GILFD 483 (896)
Q Consensus 479 ~il~d 483 (896)
.|++|
T Consensus 198 ~IIlD 202 (286)
T PF10672_consen 198 LIILD 202 (286)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99987
No 261
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=66.37 E-value=23 Score=36.44 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=35.8
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHH---HHHHcCCCcEEEEEeCCHHHHHHhh-c--ccCCCeEEEccChhcHH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCK---ILERLGKKGRLIAIDKDTESVSLGN-K--ITDSRFSIIHNCFTELD 466 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~---ll~~~~~~~~~~~~D~d~~a~~~~~-~--~~~~~~~~~~~~~~~~~ 466 (896)
+|++..++| ++.|-.--=.||=... +++.++++++|+|+|+|........ + ...+|++++.++=.+.+
T Consensus 25 qeli~~~kP------d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 25 QELIWELKP------DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTH
T ss_pred HHHHHHhCC------CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHH
Confidence 556655555 4777777777776654 4677778899999999866553321 1 12367777776554443
Q ss_pred H
Q psy2376 467 I 467 (896)
Q Consensus 467 ~ 467 (896)
.
T Consensus 99 ~ 99 (206)
T PF04989_consen 99 I 99 (206)
T ss_dssp H
T ss_pred H
Confidence 3
No 262
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=66.14 E-value=13 Score=40.47 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=41.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhh---ccc--CCCeEEEccChhcHHH
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN---KIT--DSRFSIIHNCFTELDI 467 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~---~~~--~~~~~~~~~~~~~~~~ 467 (896)
.|+.++|.-+|+|.|+-.++++- + ..|+|||-++.-....+ +.. +.++..+-...++++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G-A-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG-A-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC-C-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 48999999999999999999984 3 47999998877665432 222 2233444445555554
No 263
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=65.20 E-value=19 Score=40.07 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=40.0
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEc-cChhcH
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIH-NCFTEL 465 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~-~~~~~~ 465 (896)
.+|..+||.-.+-||-|..++++ +.+|+|+|..+-+-... .++|++.+. ++|+..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~~~L~---~~~~V~h~~~d~fr~~ 265 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMAQSLM---DTGQVEHLRADGFKFR 265 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcCHhhh---CCCCEEEEeccCcccC
Confidence 35999999999999999999997 35999999776442221 346676543 456543
No 264
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=63.16 E-value=40 Score=35.97 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=53.2
Q ss_pred HHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccC--------------Cc
Q psy2376 806 IKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI--------------SE 863 (896)
Q Consensus 806 ~~el~~~~~~~l~~--------~~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~--------------~~ 863 (896)
..|+.+.+.+.+.. ..+.+|+++++|+||+++-=.-.+.+++|.+.+||++||=-. ++
T Consensus 3 ~~el~~~le~~~p~~~a~d~d~~GLqv~~~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~ 82 (250)
T COG0327 3 VSELIELLEEFLPPELAEDWDNNGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKG 82 (250)
T ss_pred HHHHHHHHHhhcCHHHhhccCcceEEeCCCCcccceEEEEeeCCHHHHHHHHHCCCCEEEEcCchhcCCCccccccchHH
Confidence 44555555554432 234567778999999999888899999999999999987222 22
Q ss_pred hHHHHHHHcCCeEEEe
Q psy2376 864 STVYISRESGVAYFAA 879 (896)
Q Consensus 864 h~~~~a~~~g~~li~~ 879 (896)
--.....++++++...
T Consensus 83 ~~i~~li~~~I~ly~~ 98 (250)
T COG0327 83 KRIKALIQNDINLYAA 98 (250)
T ss_pred HHHHHHHhCCCeEEEc
Confidence 2245667888999877
No 265
>KOG2187|consensus
Probab=62.72 E-value=9.1 Score=44.28 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=44.8
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc----CCCeEEEccC
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT----DSRFSIIHNC 461 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~----~~~~~~~~~~ 461 (896)
.+++++|+.+|.|--++++.++. .+|||+.++|+|.+-|++.. -.+.+|+.+.
T Consensus 383 ~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred CCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 47899999999999999999976 48999999999999997641 2567888883
No 266
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=62.36 E-value=1.5e+02 Score=30.36 Aligned_cols=121 Identities=14% Similarity=0.024 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEe-cCCCCCCCCCcHHHHHHHHcCCCccccCc
Q psy2376 704 DLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAY-HLPLDMHPKLGNNAQLAKILNFSCTRRFS 782 (896)
Q Consensus 704 ~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~-Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~ 782 (896)
..++++.+.|+|.|++|--. + .....+.++.+.++|+-+... +++.+.... ...+..+|..-... .
T Consensus 67 ~~~~~~~~~Gad~i~vh~~~---~-----~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~----~~~~~~~g~d~v~~-~ 133 (206)
T TIGR03128 67 YEAEQAFAAGADIVTVLGVA---D-----DATIKGAVKAAKKHGKEVQVDLINVKDKVKR----AKELKELGADYIGV-H 133 (206)
T ss_pred HHHHHHHHcCCCEEEEeccC---C-----HHHHHHHHHHHHHcCCEEEEEecCCCChHHH----HHHHHHcCCCEEEE-c
Confidence 36899999999999999421 1 112467888899999999875 776542211 11123335442221 1
Q ss_pred cCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccC
Q psy2376 783 KNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI 861 (896)
Q Consensus 783 ~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~ 861 (896)
+ +..|.- + .+..++ -++.+++.+. . -++++.+|-..+-++++.+.|+|.++.|--
T Consensus 134 -p--g~~~~~-------~-~~~~~~-~i~~l~~~~~----------~--~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsa 188 (206)
T TIGR03128 134 -T--GLDEQA-------K-GQNPFE-DLQTILKLVK----------E--ARVAVAGGINLDTIPDVIKLGPDIVIVGGA 188 (206)
T ss_pred -C--CcCccc-------C-CCCCHH-HHHHHHHhcC----------C--CcEEEECCcCHHHHHHHHHcCCCEEEEeeh
Confidence 1 111110 1 122332 2334444332 1 157777777777888999999999988755
No 267
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=62.00 E-value=21 Score=34.44 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=37.3
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHH
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSL 446 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~ 446 (896)
..+.++.+.+. .++++.++|.-+|.|..+..+.+. +. +++|+|.++++++.
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKR-GF--EVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHT-TS--EEEEEESSHHHHHH
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHh-CC--EEEEEECCHHHHhh
Confidence 34444444421 135899999999999888888443 33 89999999999866
No 268
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.98 E-value=3e+02 Score=31.80 Aligned_cols=36 Identities=11% Similarity=-0.059 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2376 78 IATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLV 113 (896)
Q Consensus 78 ~~~~~~~~~~~~l~li~~lli~ll~~l~a~~I~~~l 113 (896)
.++.+.++.+.+-+++-+++-++.+.+++|+++++-
T Consensus 104 G~Ag~ALa~Aa~~Sf~gg~vs~~~l~~~Ap~la~~A 139 (504)
T COG3333 104 GKAGVALAIAAIASFIGGLVSTLGLLFLAPPLAKLA 139 (504)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345566777888888888888899999999999863
No 269
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=61.33 E-value=27 Score=39.75 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=56.1
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc------cCCCeEEEccC-hhcHHHHHHhcCCCcccE
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI------TDSRFSIIHNC-FTELDIILKKYNIKKIDG 479 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~------~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~ 479 (896)
|+.++|+-.=.||-|.+-+..- -..|+++|.+..|++.|++. ..++..+++++ |+-+.+.-+ .|. ++|.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~-~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGE-KFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCC-cccE
Confidence 8899999999999998887752 33899999999999999863 24677888776 665555433 232 6899
Q ss_pred EEEe
Q psy2376 480 ILFD 483 (896)
Q Consensus 480 il~d 483 (896)
|++|
T Consensus 294 IilD 297 (393)
T COG1092 294 IILD 297 (393)
T ss_pred EEEC
Confidence 9975
No 270
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=59.66 E-value=1.6e+02 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcchhHhHHHHH
Q psy2376 131 TRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPIL 166 (896)
Q Consensus 131 l~Il~~~l~f~~l~~~~~~il~~~~~f~~~~i~~ii 166 (896)
+++++++.++.++......++++.++.+......++
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~ 37 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLI 37 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 578899999999999999999999999988776554
No 271
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=59.39 E-value=7.7 Score=38.27 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHhhcC
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNT 639 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~~~ 639 (896)
+.+++|+.+.++|||||+++++.|.. +++..++.+..+.
T Consensus 59 d~~~~l~ei~rvLkpGG~l~i~d~~~-~~~~~~~~~~~~~ 97 (160)
T PLN02232 59 DRLRAMKEMYRVLKPGSRVSILDFNK-SNQSVTTFMQGWM 97 (160)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCC-CChHHHHHHHHHH
Confidence 56788999999999999999998864 5566666665544
No 272
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=58.87 E-value=6.1 Score=32.95 Aligned_cols=42 Identities=26% Similarity=0.455 Sum_probs=32.1
Q ss_pred HhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhcc-CCCcchHHHHHH
Q psy2376 522 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSI-TPITRTKQLVEI 568 (896)
Q Consensus 522 ~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~~-~~~~~t~~l~~~ 568 (896)
||+.+.++|...+..-| .+.|++|+++|.. +++++..||.++
T Consensus 10 vNta~~~~L~~~ipgig-----~~~a~~Il~~R~~~g~~~s~~dL~~v 52 (69)
T TIGR00426 10 INTATAEELQRAMNGVG-----LKKAEAIVSYREEYGPFKTVEDLKQV 52 (69)
T ss_pred CcCCCHHHHHhHCCCCC-----HHHHHHHHHHHHHcCCcCCHHHHHcC
Confidence 58999999988644444 3579999999984 579888888653
No 273
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=58.79 E-value=7.6 Score=37.92 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=32.6
Q ss_pred HhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhcc-CCCcchHHHHHH
Q psy2376 522 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSI-TPITRTKQLVEI 568 (896)
Q Consensus 522 ~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~~-~~~~~t~~l~~~ 568 (896)
+|+.|.+|| +-+-- -..+.|++|+++|++ .||++..||.++
T Consensus 91 iNtAs~eeL-~~lpg-----IG~~kA~aIi~yRe~~G~f~sv~dL~~v 132 (149)
T COG1555 91 INTASAEEL-QALPG-----IGPKKAQAIIDYREENGPFKSVDDLAKV 132 (149)
T ss_pred ccccCHHHH-HHCCC-----CCHHHHHHHHHHHHHcCCCCcHHHHHhc
Confidence 789999999 33322 346789999999985 599999999884
No 274
>KOG2899|consensus
Probab=57.51 E-value=17 Score=38.07 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=44.2
Q ss_pred hHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 392 ~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
.++-+..|.. +.-...-++|.-+-+|--|..|.+.+++ ..++|+|||+--++.|++
T Consensus 45 ~D~rLk~L~~-~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 45 SDPRLKVLEK-DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARK 100 (288)
T ss_pred CChhhhhccc-cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHH
Confidence 3444444432 1234678999999999999999999986 479999999999999976
No 275
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=57.08 E-value=16 Score=37.70 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=34.4
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
+++.++..... +|++++|.-.|.|- |..-++++ +-+-||+|++++..+.|++
T Consensus 180 l~~~lI~~~t~----~gdiVlDpF~GSGT-T~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTN----PGDIVLDPFAGSGT-TAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-----TT-EEEETT-TTTH-HHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhc----cceeeehhhhccCh-HHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 34444444433 59999999888875 44445555 3589999999999998864
No 276
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=57.08 E-value=15 Score=41.34 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=36.2
Q ss_pred EEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 433 RLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 433 ~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
+++|.|+|+..++.|+.. ..+.++|.+..+..+...+ +.+|.++.|
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-----~~~gvvI~N 306 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-----EEYGVVISN 306 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-----CcCCEEEeC
Confidence 488999999999998753 4688999999998887654 246777765
No 277
>PRK00124 hypothetical protein; Validated
Probab=56.77 E-value=31 Score=33.69 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=54.0
Q ss_pred CccCHHHHHHHHHhHhCCCcEE-E--cC-----CCCceeEEEEEecCch--HHHHHHHHcCCcEEEEccCCchHHHHHHH
Q psy2376 802 KIITIKDLFHHITRKIGKKPIV-I--GD-----LNKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEISESTVYISRE 871 (896)
Q Consensus 802 ~~~~~~el~~~~~~~l~~~~~~-~--g~-----~~~~v~rvai~~Gsg~--~~i~~a~~~g~D~~ITGd~~~h~~~~a~~ 871 (896)
..++..|.+.++.+.++++.+. . +. ....++.|-|-.|.-+ ..|-+..+.| |++||.|+.- +-.+.+
T Consensus 8 DACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g-DiVIT~Di~L--Aa~~l~ 84 (151)
T PRK00124 8 DACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKG-DIVITQDYGL--AALALE 84 (151)
T ss_pred CCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCC-CEEEeCCHHH--HHHHHH
Confidence 4567999999999999998774 3 31 1223677777666653 4565666677 9999999754 444567
Q ss_pred cCCeEEE-eCChhh
Q psy2376 872 SGVAYFA-AGHHAT 884 (896)
Q Consensus 872 ~g~~li~-~gH~~s 884 (896)
.|..+++ =|+..|
T Consensus 85 Kga~vl~prG~~yt 98 (151)
T PRK00124 85 KGAIVLNPRGYIYT 98 (151)
T ss_pred CCCEEECCCCcCCC
Confidence 7877776 344333
No 278
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=56.60 E-value=22 Score=31.21 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=34.1
Q ss_pred CchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEe
Q psy2376 840 AAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAA 879 (896)
Q Consensus 840 sg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~ 879 (896)
.+..+.+.+...|||++|+|.+..+....-.+.|+.++..
T Consensus 41 ~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 41 GGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred cchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 3445666667799999999999999998889999999985
No 279
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=55.42 E-value=14 Score=41.07 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=46.7
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cC-CCeEEEcc-ChhcHHHHHHhcCCCcccE
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TD-SRFSIIHN-CFTELDIILKKYNIKKIDG 479 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~-~~~~~~~~-~~~~~~~~l~~~~~~~~d~ 479 (896)
++|+.+.|=-+|.||-. .|.-=-++++||.|+|...++-|+.. +. +.+.++.. +=.+++ |++. .+|+
T Consensus 196 ~~G~~vlDPFcGTGgiL---iEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l~~~---~vda 267 (347)
T COG1041 196 KRGELVLDPFCGTGGIL---IEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--LRDN---SVDA 267 (347)
T ss_pred ccCCEeecCcCCccHHH---HhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--CCCC---ccce
Confidence 35999999999999843 34322367999999999999888653 21 23433333 444444 3321 4788
Q ss_pred EEEe
Q psy2376 480 ILFD 483 (896)
Q Consensus 480 il~d 483 (896)
|+-|
T Consensus 268 IatD 271 (347)
T COG1041 268 IATD 271 (347)
T ss_pred EEec
Confidence 8765
No 280
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=55.30 E-value=51 Score=32.73 Aligned_cols=76 Identities=20% Similarity=0.133 Sum_probs=62.3
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
.|.-++..--|.|=-|++||++--+...+.+++.|++=...-++++++ ++++.++=-+++.++.+.....+|.|+=
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-VNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-ccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 466788999999999999999977778999999999998877776543 5688888888888898876666777653
No 281
>KOG1499|consensus
Probab=55.13 E-value=21 Score=39.54 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=55.6
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
.+++++|.-+|.|=-|.+=++.- ..+|+|+|-...| +.|+++ +++.++++++.-+++ .|+ .++||-|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP---~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP---VEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC---ccceeEE
Confidence 48999999999999999888874 4599999999888 666654 467789999998887 344 5589988
Q ss_pred EE
Q psy2376 481 LF 482 (896)
Q Consensus 481 l~ 482 (896)
+=
T Consensus 132 vS 133 (346)
T KOG1499|consen 132 VS 133 (346)
T ss_pred ee
Confidence 63
No 282
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=53.75 E-value=29 Score=31.01 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=35.6
Q ss_pred cCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCC
Q psy2376 839 GAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 881 (896)
Q Consensus 839 Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH 881 (896)
|.|....+...+.|||++|+|.+..+......+.|+.++...-
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC
Confidence 4456677777779999999999999998888899999986543
No 283
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=53.60 E-value=6.5 Score=34.06 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccccCceEEE
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVV 620 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~v 620 (896)
++.+++++.+.++|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7788889999999999999986
No 284
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=52.35 E-value=13 Score=37.55 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCH
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDT 441 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~ 441 (896)
-|++...-.+ |+.++||.--|+|..|+-+...++|+|+||++==++
T Consensus 38 ~E~L~FaGlk---pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 38 GEVLAFAGLK---PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred cceeEEeccC---CCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 3555555554 599999999999999999999999999999985443
No 285
>KOG1500|consensus
Probab=51.56 E-value=30 Score=37.79 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=51.9
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
.+++++|.-.|.|=-|.+-.+.- ..|||+++-...|- .|+++ +.+|++.+.+.-+++. |.+ ++|.|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAq-yA~~Lv~~N~~~~rItVI~GKiEdie--LPE----k~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQ-YARKLVASNNLADRITVIPGKIEDIE--LPE----KVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHH-HHHHHHhcCCccceEEEccCcccccc--Cch----hccEE
Confidence 48999999999999887777663 45999999887764 55554 5689999999988775 333 68877
Q ss_pred E
Q psy2376 481 L 481 (896)
Q Consensus 481 l 481 (896)
+
T Consensus 248 I 248 (517)
T KOG1500|consen 248 I 248 (517)
T ss_pred E
Confidence 6
No 286
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=51.31 E-value=27 Score=38.88 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=48.3
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEe
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~d 483 (896)
.+.|=+.=|.|+++..+++..+ .+|++||+.++-.+.|+++-. -.++..+-++..+.+++ .+|+|+-=
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA--d~~i~~~~~~~~~~~~~----~~d~ii~t 236 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA--DHVINSSDSDALEAVKE----IADAIIDT 236 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC--cEEEEcCCchhhHHhHh----hCcEEEEC
Confidence 4556666688999999999985 799999999999999988632 34444444445554544 26666543
No 287
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=49.88 E-value=38 Score=36.35 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=55.7
Q ss_pred hcccchHHHhhhccccccccCcEEEEEccC--CChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc--CCC--eEEEcc
Q psy2376 387 MGFLFLNEAINWLNIENERINGIYIDATFG--QGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSR--FSIIHN 460 (896)
Q Consensus 387 l~~~m~~e~l~~L~~~~~~~~~~~vD~T~G--~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~--~~~--~~~~~~ 460 (896)
.+...+...+.++..+. --.-|+|+-.| .-+++..+.++..|++||.-.|.||.+++.++.++ +.+ ..+++.
T Consensus 51 ~nR~Fl~RaVr~la~~~--GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a 128 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEA--GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHCTT-----EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHhc--CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence 33455666777776531 02578997665 34688899999999999999999999999998863 233 899999
Q ss_pred ChhcHHHHHHh
Q psy2376 461 CFTELDIILKK 471 (896)
Q Consensus 461 ~~~~~~~~l~~ 471 (896)
+..+-+.+|..
T Consensus 129 D~r~p~~iL~~ 139 (267)
T PF04672_consen 129 DLRDPEAILAH 139 (267)
T ss_dssp -TT-HHHHHCS
T ss_pred CCCCHHHHhcC
Confidence 99999999974
No 288
>KOG3010|consensus
Probab=49.62 E-value=20 Score=37.60 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=32.7
Q ss_pred cEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 408 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 408 ~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
++.+|.-.|+|--+.-+.+.+ + +|+|.|..++.++.+++.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k--~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-K--EVIATDVSEAMLKVAKKH 74 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-h--hheeecCCHHHHHHhhcC
Confidence 499999999995555555554 3 699999999999999774
No 289
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=49.10 E-value=24 Score=36.48 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=49.9
Q ss_pred CCCccccCCCCCCCCHHHHHh------------ccCHHHHHHHHHHhcCcccHHHHHHHHHHHhccC--------CC-cc
Q psy2376 503 DGPLDMRMDITRGISASKWLA------------NATEFNIKKVIQDYGEERFAKKIAKEIVHYRSIT--------PI-TR 561 (896)
Q Consensus 503 ~~~ldmrm~~~~~~~a~~~~~------------~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~~~--------~~-~~ 561 (896)
|.-+|+|... ..+-.|+|. ..|+++|..+|.+ ..-.+||+.|.+.=+.+ -+ ++
T Consensus 26 ~~a~~~R~g~--~vdleevLa~~~Vf~da~KG~~Ase~dL~k~FgT----td~~eI~~eIl~kGeiQlTaeqR~~m~e~k 99 (234)
T COG1500 26 NKALEYREGK--EVDLEEVLATETVFKDASKGEKASEEDLKKAFGT----TDPDEIAEEILKKGEIQLTAEQRREMLEEK 99 (234)
T ss_pred hHHHHHHcCC--CCCHHHHHhHHHHHHhccccccCCHHHHHHHhCC----CCHHHHHHHHHhcCceeccHHHHHHHHHHH
Confidence 5667888775 456666663 4688999988865 34567888887432110 01 12
Q ss_pred hHHHHHHHH-hhccCCCCCCChhhHHHHHH
Q psy2376 562 TKQLVEIIL-KSIRGNKRYKNPATRTFQAI 590 (896)
Q Consensus 562 t~~l~~~~~-~~~~~~~~~~~~~~~~fqal 590 (896)
-.|..++|. +++.+..+.-||.+|+=+||
T Consensus 100 ~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Am 129 (234)
T COG1500 100 KRQIINIISRNAIDPQTKAPHPPARIEKAM 129 (234)
T ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Confidence 345665554 45544444459999875554
No 290
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=48.96 E-value=18 Score=33.25 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=27.3
Q ss_pred HHHhhhHHHHHHHHHHHHhccccCceEEEE
Q psy2376 592 IYINQELKNLSIALKIGFKKLNIKGRIVVI 621 (896)
Q Consensus 592 i~vn~el~~l~~~l~~~~~~l~~~g~~~vi 621 (896)
|+.|.==+-|+++++.+.+.|+|||++++=
T Consensus 14 IHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 14 IHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 778888899999999999999999999864
No 291
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=48.14 E-value=70 Score=32.85 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccCc
Q psy2376 706 IKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNN 785 (896)
Q Consensus 706 i~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~~ 785 (896)
++.++++.-++++.-+=--=++..+ ......+-++.++++||+||+.=---+.- ++||...+..|....+.....-
T Consensus 76 ldaiL~R~P~vvLVDELAHtN~pgs-r~~kR~qDVeeLL~aGIdV~TTlNvqHlE---Slnd~V~~iTgv~vrEtVPD~~ 151 (211)
T PF02702_consen 76 LDAILARRPQVVLVDELAHTNAPGS-RHKKRYQDVEELLDAGIDVYTTLNVQHLE---SLNDVVEQITGVRVRETVPDSV 151 (211)
T ss_dssp HHHHHHH--SEEEES-TT-B--TT--SSSBHHHHHHHHHHTT-EEEEEEEGGGBG---GGHHHHHHHHS----S-B-HHH
T ss_pred HHHHHhcCCCEEEeCcccccCCCCC-CCcccHHhHHHHHHCCCeEEEeeeHHHhh---hhHHHHHHHhCCeeeeeCCHHH
Confidence 6778888888888754221111111 12334678999999999999875554443 7999999999997655432110
Q ss_pred ccccceeecccccccCCccCHHHHHHHHHh
Q psy2376 786 IGWIGKIINLKRYNFKKIITIKDLFHHITR 815 (896)
Q Consensus 786 ~g~~g~i~~~~~~~~~~~~~~~el~~~~~~ 815 (896)
....-++.- -.+|.++|.+++++
T Consensus 152 l~~Adev~l-------VDi~Pe~L~~RL~~ 174 (211)
T PF02702_consen 152 LDRADEVEL-------VDITPEELLERLKE 174 (211)
T ss_dssp HHT-SCEEE-------B---HHHHHHHHHT
T ss_pred HhhcCeEEE-------ecCCHHHHHHHHHc
Confidence 111112221 24678899998875
No 292
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=47.28 E-value=22 Score=35.97 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccccCceEEEEeec
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
+.+++.++.+.++|+|||++++..|.
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 34788899999999999999987544
No 293
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.10 E-value=53 Score=34.56 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEE-EccChhcHHHHHHh
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSI-IHNCFTELDIILKK 471 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 471 (896)
.+.++...... +|.+++|.---.||-|..+|++- -.+|||+|.--.=+... -+.+.|+.. -+.|++++..--
T Consensus 68 ~~ale~F~l~~--k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k-LR~d~rV~~~E~tN~r~l~~~~-- 140 (245)
T COG1189 68 EKALEEFELDV--KGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK-LRNDPRVIVLERTNVRYLTPED-- 140 (245)
T ss_pred HHHHHhcCcCC--CCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh-HhcCCcEEEEecCChhhCCHHH--
Confidence 45566655543 58999999999999999999984 35899999864322211 013567654 455776654321
Q ss_pred cCCCcccEEEEecc
Q psy2376 472 YNIKKIDGILFDLG 485 (896)
Q Consensus 472 ~~~~~~d~il~dlG 485 (896)
.. +.+|.++-|+-
T Consensus 141 ~~-~~~d~~v~DvS 153 (245)
T COG1189 141 FT-EKPDLIVIDVS 153 (245)
T ss_pred cc-cCCCeEEEEee
Confidence 11 15788888764
No 294
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=46.91 E-value=1.2e+02 Score=31.99 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCC-----eEEEecCCCCCCCCCcHHHHHHHHcCCCcc
Q psy2376 704 DLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKI-----NLYAYHLPLDMHPKLGNNAQLAKILNFSCT 778 (896)
Q Consensus 704 ~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I-----~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~ 778 (896)
+.+++-++.|||+|.-|=- . .....+.+..+.++|+ -...++|+++... .+.+.++.=-.
T Consensus 82 ~~i~~~~~aGad~It~H~E----a-----~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~------~~l~~vD~VLi 146 (228)
T PRK08091 82 EVAKACVAAGADIVTLQVE----Q-----THDLALTIEWLAKQKTTVLIGLCLCPETPISLLE------PYLDQIDLIQI 146 (228)
T ss_pred HHHHHHHHhCCCEEEEccc----C-----cccHHHHHHHHHHCCCCceEEEEECCCCCHHHHH------HHHhhcCEEEE
Confidence 4688888999998888731 1 1224577888888887 3456677766542 22222221100
Q ss_pred ccCccCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEE
Q psy2376 779 RRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 858 (896)
Q Consensus 779 ~~~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~IT 858 (896)
-..+ + |.-|+- + .++-.+++++.-.... . ...=-.|.|=||-..+-++.+.++|||+++.
T Consensus 147 MtV~-P--GfgGQ~-------f-----~~~~l~KI~~lr~~~~----~-~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~ 206 (228)
T PRK08091 147 LTLD-P--RTGTKA-------P-----SDLILDRVIQVENRLG----N-RRVEKLISIDGSMTLELASYLKQHQIDWVVS 206 (228)
T ss_pred EEEC-C--CCCCcc-------c-----cHHHHHHHHHHHHHHH----h-cCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 0011 1 222331 1 1223334433221100 0 0111247788888888999999999999999
Q ss_pred cc
Q psy2376 859 GE 860 (896)
Q Consensus 859 Gd 860 (896)
|-
T Consensus 207 GS 208 (228)
T PRK08091 207 GS 208 (228)
T ss_pred Ch
Confidence 94
No 295
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=46.38 E-value=2.2e+02 Score=28.85 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEE-ecCCCCCCCCCcHHHHHHHHcCCCccccCc
Q psy2376 704 DLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYA-YHLPLDMHPKLGNNAQLAKILNFSCTRRFS 782 (896)
Q Consensus 704 ~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~-~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~ 782 (896)
..++++.+.|+|.|++|.-.. .....+.++.+.++|+-+.. .+++.+... .-. +...|..-... .
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~--------~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e---~~~--~~~~~~d~v~~-~ 133 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAP--------LSTIKKAVKAAKKYGKEVQVDLIGVEDPEK---RAK--LLKLGVDIVIL-H 133 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCC--------HHHHHHHHHHHHHcCCeEEEEEeCCCCHHH---HHH--HHHCCCCEEEE-c
Confidence 457899999999999996331 11235677888889988876 377665442 111 23333332111 0
Q ss_pred cCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccC
Q psy2376 783 KNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI 861 (896)
Q Consensus 783 ~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~ 861 (896)
+ +.-+.- ...+... +.++++++.. + -.|.+.+|-..+-++++.+.|+|.++.|--
T Consensus 134 ~---~~~~~~-------~~~~~~~-~~i~~~~~~~----------~---~~i~~~GGI~~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 134 R---GIDAQA-------AGGWWPE-DDLKKVKKLL----------G---VKVAVAGGITPDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred C---cccccc-------cCCCCCH-HHHHHHHhhc----------C---CCEEEECCcCHHHHHHHHhcCCCEEEEeeh
Confidence 0 000000 0012222 2233333321 1 134556666667788999999999988863
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.31 E-value=2.2e+02 Score=30.46 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCe---EEEecCCCCCCCCCcHHHHHHHHcCCCcccc
Q psy2376 704 DLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKIN---LYAYHLPLDMHPKLGNNAQLAKILNFSCTRR 780 (896)
Q Consensus 704 ~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~---vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~ 780 (896)
+-++++.+.|+|-+|.|- + | .....+.+..+.++|+. +.+.+|+.+... ......-|+--.-.
T Consensus 106 ~f~~~~~~aGvdgviipD-l---p-----~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~-----~i~~~~~gfiy~vs 171 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVAD-L---P-----LEESGDLVEAAKKHGVKPIFLVAPNADDERLK-----QIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHcCCCEEEECC-C---C-----hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-----HHHHhCCCCEEEEE
Confidence 468899999999999983 2 1 12245678889999965 566666654321 11111111110000
Q ss_pred CccCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc---hHHHHHHHHcCCcEEE
Q psy2376 781 FSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA---QNLLTDAINEGVTAYI 857 (896)
Q Consensus 781 ~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g~~~~~v~rvai~~Gsg---~~~i~~a~~~g~D~~I 857 (896)
..|.-|.-. ++ +....++++++++..+. .|++ |+| .+-++++.+.|||.+|
T Consensus 172 ----~~G~TG~~~-----~~--~~~~~~~i~~lr~~~~~-------------pi~v--gfGI~~~e~~~~~~~~GADgvV 225 (256)
T TIGR00262 172 ----RAGVTGARN-----RA--ASALNELVKRLKAYSAK-------------PVLV--GFGISKPEQVKQAIDAGADGVI 225 (256)
T ss_pred ----CCCCCCCcc-----cC--ChhHHHHHHHHHhhcCC-------------CEEE--eCCCCCHHHHHHHHHcCCCEEE
Confidence 012223200 01 23477778877775421 2443 444 4578888999999999
Q ss_pred EccCC
Q psy2376 858 SGEIS 862 (896)
Q Consensus 858 TGd~~ 862 (896)
.|--=
T Consensus 226 vGSai 230 (256)
T TIGR00262 226 VGSAI 230 (256)
T ss_pred ECHHH
Confidence 99643
No 297
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=45.94 E-value=40 Score=39.28 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=50.8
Q ss_pred CcEEEEEccCCChhHHHHHHHc---CCCcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccChhcHHHHHHhcCCCccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERL---GKKGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNCFTELDIILKKYNIKKID 478 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~---~~~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~d 478 (896)
+.+++|.=.|.|-=+.+-++.. +...+|||++..+.|....+++ .++++++++++-+++.- .+ +||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pe----kvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PE----KVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-----EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CC----cee
Confidence 6799999999999998887763 2346999999999998665432 46899999999877652 22 688
Q ss_pred EEE
Q psy2376 479 GIL 481 (896)
Q Consensus 479 ~il 481 (896)
.|+
T Consensus 261 IIV 263 (448)
T PF05185_consen 261 IIV 263 (448)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 298
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.74 E-value=63 Score=31.35 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=51.9
Q ss_pred CccCHHHHHHHHHhHhCCCcEE-EcC-----CCCceeEEEEEecCch--HHHHHHHHcCCcEEEEccCCchHHHHHHHcC
Q psy2376 802 KIITIKDLFHHITRKIGKKPIV-IGD-----LNKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEISESTVYISRESG 873 (896)
Q Consensus 802 ~~~~~~el~~~~~~~l~~~~~~-~g~-----~~~~v~rvai~~Gsg~--~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g 873 (896)
..++..+.+.++.+..|++... .+. +...++.+-|-+|.-+ +.|-+-.+.| |+.||-|+.- +-.+.+.|
T Consensus 9 DACPVk~~i~r~A~r~~~~v~~Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-DlVVT~Di~L--A~~ll~kg 85 (150)
T COG1671 9 DACPVKDEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-DLVVTADIPL--ASLLLDKG 85 (150)
T ss_pred CCCchHHHHHHHHHHhCCeEEEEeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-CEEEECchHH--HHHHHhcC
Confidence 4677999999999999998764 331 2345777877777653 4555545555 9999999864 34456678
Q ss_pred CeEEE
Q psy2376 874 VAYFA 878 (896)
Q Consensus 874 ~~li~ 878 (896)
..+++
T Consensus 86 ~~v~~ 90 (150)
T COG1671 86 AAVLN 90 (150)
T ss_pred CEEEC
Confidence 77775
No 299
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=45.73 E-value=4.4e+02 Score=28.88 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2376 250 LMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDWIPIFAHSGLALSIGLGACLHASFLY 313 (896)
Q Consensus 250 l~~l~~~li~~ais~~l~P~lS~~~~~~d~~~~~~~~~~i~~~Gi~G~aia~~is~~i~~il~~ 313 (896)
+..+.+.++..+++....|.+-...+-.|..-++.-+- -++.|+.+...++.++.-.+.-
T Consensus 5 ii~l~~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v----~~ligai~~~li~~~~~~~~~~ 64 (356)
T COG4956 5 IIILLFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYV----DALIGAIIFFLISFWFGKYVLN 64 (356)
T ss_pred HHHHHHHHHHhhhhHhhHHHHHhhcCcccchhhccHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444446778888889999888887777665555333 2577777777777776555443
No 300
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=45.58 E-value=17 Score=32.91 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhccccCceEEEE
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVI 621 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~vi 621 (896)
++.++.|+.+.+.|+|||+++|-
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEE
Confidence 66777799999999999999764
No 301
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.07 E-value=56 Score=32.80 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=37.7
Q ss_pred ecCHHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHH---cCCeEEEecCCCCC
Q psy2376 700 TASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLII---NKINLYAYHLPLDM 759 (896)
Q Consensus 700 ~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~---~~I~vy~~Ht~lD~ 759 (896)
+-+.+.+++|.+.|+|.+..+-|+.+.+..+ .....+.++.+.+ .++.++.++-|-..
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEGD--WEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCCC--HHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 4445568899999999999998876554210 1112333444444 58999988876654
No 302
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=44.54 E-value=43 Score=29.76 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=34.6
Q ss_pred cCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCC
Q psy2376 839 GAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 881 (896)
Q Consensus 839 Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH 881 (896)
|.|....+.....|||++|+|.+..+......+.|+.++....
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGGIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcccCccHHHHHHHcCCEEEEcCC
Confidence 3445555556789999999999999998888899999986654
No 303
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=44.26 E-value=38 Score=36.20 Aligned_cols=42 Identities=12% Similarity=-0.056 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHhh
Q psy2376 595 NQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 637 (896)
Q Consensus 595 n~el~~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~ 637 (896)
.|-++.+++.++++.++|+|||++++..-++-.+. |++.+++
T Consensus 189 ~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~-v~~~l~~ 230 (251)
T TIGR03704 189 ADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL-AVEAFAR 230 (251)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH-HHHHHHH
Confidence 35588899999999999999999997755554444 5555554
No 304
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=43.29 E-value=53 Score=35.56 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=47.8
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 409 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 409 ~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
.++|.-.|.||-+..+-+. + -..+.++|+|+.|.+.-++...+. .++++-.+++.- +. .+++|.++.+.=|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~--~~~~Di~~~~~~--~~-~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK--LIEGDITKIDEK--DF-IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC--CccCccccCchh--hc-CCCCCEEEeCCCC
Confidence 3689999999999998775 3 347899999999998776643321 344444443321 10 3368888887644
No 305
>KOG1541|consensus
Probab=43.14 E-value=31 Score=35.73 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=45.2
Q ss_pred cccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 388 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 388 ~~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
..+|.+..++.|...++ ..+.++|.-+|.|=-+.-+.+ +.-..+|+|+.|..++.|.+
T Consensus 33 Q~em~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 33 QAEMAERALELLALPGP-KSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred hHHHHHHHHHHhhCCCC-CCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHH
Confidence 45788999999986432 468999999999876655544 23589999999999999854
No 306
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=42.32 E-value=14 Score=37.67 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecchhH-HHHHHHHh
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSLED-RIVKNFIN 636 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsled-r~vk~~~~ 636 (896)
..+++.++.+.+.|+|||++++ ....+|+ +-+.+.++
T Consensus 122 ~~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~ 159 (198)
T PRK00377 122 EKLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALE 159 (198)
T ss_pred ccHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHH
Confidence 4567789999999999999974 5556665 33444444
No 307
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=41.82 E-value=50 Score=31.00 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=35.4
Q ss_pred ecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCC
Q psy2376 838 TGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 881 (896)
Q Consensus 838 ~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH 881 (896)
.|.|....+.+.++|+|++|++.+.......-++.|+-+.-+-=
T Consensus 51 ~g~G~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 51 KGAGIRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred CcchHHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 35555677777889999999999999998888889988776543
No 308
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=41.47 E-value=72 Score=31.01 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=38.3
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
.+-+.|.-+|||--=-.+-|.+ |+.+++.||+.-.+...+.. +-=.++.++.++.-..+...|. ++..+=+|+|-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp~~~P---~~~~~ilGdi~~tl~~~~~~g~-~a~laHaD~G~ 103 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHPSSTP---PEEDLILGDIRETLPALARFGA-GAALAHADIGT 103 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG------GGGEEES-HHHHHHHHHHH-S--EEEEEE----
T ss_pred CCceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCCCCCC---chHheeeccHHHHhHHHHhcCC-ceEEEEeecCC
Confidence 5788999999998888888888 56799999999777644321 1123555665554444555554 35556666664
No 309
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=41.30 E-value=50 Score=35.34 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=41.3
Q ss_pred HHHcCCCcEEEEEeCCHHHHHHhhcc-------------cCCCeEEEccChhcHHHHHHhcCC-CcccEEEEecc
Q psy2376 425 LERLGKKGRLIAIDKDTESVSLGNKI-------------TDSRFSIIHNCFTELDIILKKYNI-KKIDGILFDLG 485 (896)
Q Consensus 425 l~~~~~~~~~~~~D~d~~a~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~d~il~dlG 485 (896)
|++.+++.+|+|.|++++.++.+.++ .+-.+-++...-+.+.+++++..- -+.+.++.|.|
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 34446778999999999999998543 123467788888888888877643 35789999986
No 310
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=40.83 E-value=26 Score=35.86 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecchhH
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSLED 628 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsled 628 (896)
+.++.+++++.++|+|||+++++++.+-||
T Consensus 111 ~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~ 140 (197)
T PRK11207 111 KTIPGLIANMQRCTKPGGYNLIVAAMDTAD 140 (197)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Confidence 457788999999999999998888777654
No 311
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=40.32 E-value=60 Score=32.34 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=39.6
Q ss_pred ccccCCCCCCCCHHHHHhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCCcchHHHHHHHHhhc
Q psy2376 506 LDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEIILKSI 573 (896)
Q Consensus 506 ldmrm~~~~~~~a~~~~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~~~~~~~t~~l~~~~~~~~ 573 (896)
+||+|+ -+-+|++++++....|..=-|-..+ |.+....| |+.+..+|.+...+.+
T Consensus 2 ~~~~~~-------l~~~N~l~~~~f~~~l~~~~e~~~W---a~~~~~~R---Pf~s~~~L~~a~~~~~ 56 (166)
T PRK13798 2 MHQGMG-------LAEFNALPERQAVHALFECCHSTAW---ARRLAAAR---PFADHDALLAAADEAL 56 (166)
T ss_pred CCCcCC-------HHHHhCCCHHHHHHHHHHHhcChHH---HHHHHHcC---CCCCHHHHHHHHHHHH
Confidence 556654 3678999999999888765544433 35555555 9999999998877654
No 312
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=40.10 E-value=47 Score=34.36 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHhccccCceEEEEeecch
Q psy2376 601 LSIALKIGFKKLNIKGRIVVISFHSL 626 (896)
Q Consensus 601 l~~~l~~~~~~l~~~g~~~visfhsl 626 (896)
++..|+.+.++|+|||++++..|++-
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 56889999999999999999888763
No 313
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=39.50 E-value=24 Score=37.86 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecchhH
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSLED 628 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsled 628 (896)
.+.+++|+++.+.|||||+++++.|..-+-
T Consensus 159 ~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 159 VDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred CCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 356788999999999999999998876443
No 314
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=39.44 E-value=24 Score=37.64 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCEEEEccCCCccCC
Q psy2376 705 LIKTAVDMNADAILVHHGYFWKGE 728 (896)
Q Consensus 705 vi~~A~~~~~~lIitHHP~~f~~~ 728 (896)
..+++++.|+|+||.|||=...|.
T Consensus 208 ~a~~lidaGaDiIiG~HpHv~q~~ 231 (250)
T PF09587_consen 208 LARALIDAGADIIIGHHPHVIQPV 231 (250)
T ss_pred HHHHHHHcCCCEEEeCCCCcccce
Confidence 678889999999999999777665
No 315
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=38.66 E-value=1.5e+02 Score=30.73 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCccCcccccceeecccccccCCccCH-HHHHHHHH
Q psy2376 736 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITI-KDLFHHIT 814 (896)
Q Consensus 736 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~~~~~g~~g~i~~~~~~~~~~~~~~-~el~~~~~ 814 (896)
+.++.+.+.+-|+....+|++.|.-.. |. +. .+.++.+|
T Consensus 119 ~~~~~~~l~~~gvd~~~~H~g~D~q~~---------------------------G~-------------~~~~~~l~~ik 158 (217)
T COG0269 119 PEQRAKWLKELGVDQVILHRGRDAQAA---------------------------GK-------------SWGEDDLEKIK 158 (217)
T ss_pred HHHHHHHHHHhCCCEEEEEecccHhhc---------------------------CC-------------CccHHHHHHHH
Confidence 456677777788888888888887521 11 11 23455666
Q ss_pred hHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHHcCCcEEEEccC
Q psy2376 815 RKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI 861 (896)
Q Consensus 815 ~~l~~~~~~~g~~~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~ 861 (896)
+... ..-+|||.+|=..+-++.....|+|+||-|=-
T Consensus 159 ~~~~-----------~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGra 194 (217)
T COG0269 159 KLSD-----------LGAKVAVAGGITPEDIPLFKGIGADIVIVGRA 194 (217)
T ss_pred Hhhc-----------cCceEEEecCCCHHHHHHHhcCCCCEEEECch
Confidence 6543 12489999999999999999999999988743
No 316
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=37.97 E-value=1.5e+02 Score=30.83 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=57.6
Q ss_pred cccchHHHhhhccccccccCcEEEEEccCCChh--HHHH--HHHcCCCcEEEEEeCCHHHHHHhhc-c----cCCCeEEE
Q psy2376 388 GFLFLNEAINWLNIENERINGIYIDATFGQGGH--SCKI--LERLGKKGRLIAIDKDTESVSLGNK-I----TDSRFSII 458 (896)
Q Consensus 388 ~~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Ggh--s~~l--l~~~~~~~~~~~~D~d~~a~~~~~~-~----~~~~~~~~ 458 (896)
+-+-..|.+.-|.-- .+.+..|+++-++|.. |.+| +.+. .+||++++.-|++.+...++ + ..+.++|+
T Consensus 25 ~ep~~aEfISAlAAG--~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfv 101 (218)
T PF07279_consen 25 KEPGVAEFISALAAG--WNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFV 101 (218)
T ss_pred CCCCHHHHHHHHhcc--ccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccccccceEE
Confidence 445566777777642 2478999998876654 4444 3443 47899999999998765544 2 13446777
Q ss_pred ccC-hhcHHHHHHhcCCCcccEEEEecc
Q psy2376 459 HNC-FTELDIILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 459 ~~~-~~~~~~~l~~~~~~~~d~il~dlG 485 (896)
.++ -+++ +.. +..+|++++|--
T Consensus 102 vg~~~e~~---~~~--~~~iDF~vVDc~ 124 (218)
T PF07279_consen 102 VGEAPEEV---MPG--LKGIDFVVVDCK 124 (218)
T ss_pred ecCCHHHH---Hhh--ccCCCEEEEeCC
Confidence 654 3333 322 236899998865
No 317
>PRK13699 putative methylase; Provisional
Probab=37.74 E-value=51 Score=34.64 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=32.4
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
+|++++|.-+|.|-=.. -+++. +-+.+|+|+|++-.+.+.++
T Consensus 163 ~g~~vlDpf~Gsgtt~~-aa~~~--~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCV-AALQS--GRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHH-HHHHc--CCCEEEEecCHHHHHHHHHH
Confidence 59999999999875433 33444 45899999999999888654
No 318
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=36.79 E-value=34 Score=31.27 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccccCceEEEEeec
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
...+++++.+.++|+|||+++ +++|
T Consensus 99 ~~~~~~l~~~~~~Lk~gG~li-~~~~ 123 (124)
T TIGR02469 99 GLLQEILEAIWRRLRPGGRIV-LNAI 123 (124)
T ss_pred hhHHHHHHHHHHHcCCCCEEE-EEec
Confidence 445688999999999999965 4554
No 319
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=36.41 E-value=67 Score=38.66 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=52.7
Q ss_pred cCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEecc
Q psy2376 415 FGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 485 (896)
Q Consensus 415 ~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG 485 (896)
+|.|.-.+.+.+.+.. +..++.+|.|++..+.+++ ..+..++++-.+ ++.+++.++++.|.++...+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~---~g~~~i~GD~~~-~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE---RGIRAVLGNAAN-EEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---CCCeEEEcCCCC-HHHHHhcCccccCEEEEEcC
Confidence 6778777788887644 3479999999999888765 347888888877 66788889999998887654
No 320
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.91 E-value=11 Score=38.11 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=26.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhccccCceEE--EEeecc
Q psy2376 591 RIYINQELKNLSIALKIGFKKLNIKGRIV--VISFHS 625 (896)
Q Consensus 591 ri~vn~el~~l~~~l~~~~~~l~~~g~~~--visfhs 625 (896)
+|+++.= ..++..|+.+.+.||||||++ .|+-++
T Consensus 105 aiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred EEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 4567776 788888999999999999997 454443
No 321
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=35.82 E-value=48 Score=38.69 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHhccccCceEEE--EeecchhHH-HHHHHHhhc
Q psy2376 603 IALKIGFKKLNIKGRIVV--ISFHSLEDR-IVKNFINFN 638 (896)
Q Consensus 603 ~~l~~~~~~l~~~g~~~v--isfhsledr-~vk~~~~~~ 638 (896)
+.|+.+.++|+|||+++. -|.+.-|.. .|+.|++.+
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 589999999999999984 457777855 557777754
No 322
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=35.63 E-value=74 Score=33.91 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHH--HcCCCEEEEccCCCccCCCCcc----C--ChHHHHHHHHHHcCC-eEEEecCCCCCC
Q psy2376 705 LIKTAV--DMNADAILVHHGYFWKGENSNI----V--GIKKKRLEQLIINKI-NLYAYHLPLDMH 760 (896)
Q Consensus 705 vi~~A~--~~~~~lIitHHP~~f~~~~~~~----~--~~~~~~~~~l~~~~I-~vy~~Ht~lD~~ 760 (896)
.++++. +.+-.+|++|||++-.+..... . ....+....+.++++ .+++-|+..+..
T Consensus 156 ~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~ 220 (262)
T cd07395 156 QLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAG 220 (262)
T ss_pred HHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCc
Confidence 344443 2235699999999743322110 1 112344555666888 577778877654
No 323
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=35.56 E-value=35 Score=34.78 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecch
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSL 626 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsl 626 (896)
+.++..++.+.++|+|||+++++.+.+-
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~~~~~~ 137 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIVAAMDT 137 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 3566779999999999999888877543
No 324
>PRK05717 oxidoreductase; Validated
Probab=35.28 E-value=1.7e+02 Score=30.79 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=49.1
Q ss_pred CcEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHH-------HHHHhcCCCccc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELD-------IILKKYNIKKID 478 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~d 478 (896)
+++++ .|=|.||=...+++++. .+.+|+.+|++++..+...+...+++.++..+..+-+ +..++. +++|
T Consensus 10 ~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~--g~id 86 (255)
T PRK05717 10 GRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF--GRLD 86 (255)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHh--CCCC
Confidence 45444 56666666666666653 2459999999876544332223456777777766533 333333 3699
Q ss_pred EEEEecccCc
Q psy2376 479 GILFDLGISS 488 (896)
Q Consensus 479 ~il~dlG~ss 488 (896)
+++.+-|+++
T Consensus 87 ~li~~ag~~~ 96 (255)
T PRK05717 87 ALVCNAAIAD 96 (255)
T ss_pred EEEECCCccc
Confidence 9999998764
No 325
>PRK04148 hypothetical protein; Provisional
Probab=34.69 E-value=2e+02 Score=27.57 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=43.5
Q ss_pred HHHHHHHHhHhCCCcEEEcCCCCceeEEEE-EecCchHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCC
Q psy2376 807 KDLFHHITRKIGKKPIVIGDLNKKIYEIGW-CTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 881 (896)
Q Consensus 807 ~el~~~~~~~l~~~~~~~g~~~~~v~rvai-~~Gsg~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH 881 (896)
+++++.+++.+... + -+||.. ..|+|.++-....+.|.|+.-+ |+..+....|++.++.++...=
T Consensus 2 ~~i~~~l~~~~~~~--------~-~~kileIG~GfG~~vA~~L~~~G~~ViaI-Di~~~aV~~a~~~~~~~v~dDl 67 (134)
T PRK04148 2 DTIAEFIAENYEKG--------K-NKKIVELGIGFYFKVAKKLKESGFDVIVI-DINEKAVEKAKKLGLNAFVDDL 67 (134)
T ss_pred hHHHHHHHHhcccc--------c-CCEEEEEEecCCHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHhCCeEEECcC
Confidence 45677777765311 1 134444 4578877776777889887665 8888888889999887665443
No 326
>PRK14057 epimerase; Provisional
Probab=34.64 E-value=4.2e+02 Score=28.34 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.6
Q ss_pred eEEEEEecCchHHHHHHHHcCCcEEEEcc
Q psy2376 832 YEIGWCTGAAQNLLTDAINEGVTAYISGE 860 (896)
Q Consensus 832 ~rvai~~Gsg~~~i~~a~~~g~D~~ITGd 860 (896)
-.|.|=||-..+-++++.++|||.++.|-
T Consensus 194 ~~IeVDGGI~~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 194 KIIVIDGSLTQDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred ceEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 35777788888899999999999999993
No 327
>KOG1709|consensus
Probab=34.39 E-value=1.1e+02 Score=31.72 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=58.3
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc---cCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+|+.++..-||.|=-..++=++ +|..+. -+..-|+.+++-++- ..+++..+.+..++...-|.+. .+|||++
T Consensus 101 kggrvLnVGFGMgIidT~iQe~-~p~~H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~---~FDGI~y 175 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA-PPDEHW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDK---HFDGIYY 175 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc-CCcceE-EEecCHHHHHHHHhcccccccceEEEecchHhhhcccccc---CcceeEe
Confidence 3899999999999887777666 566555 589999999877652 4688999999998876666553 4999999
Q ss_pred ec
Q psy2376 483 DL 484 (896)
Q Consensus 483 dl 484 (896)
|-
T Consensus 176 DT 177 (271)
T KOG1709|consen 176 DT 177 (271)
T ss_pred ec
Confidence 94
No 328
>PRK06940 short chain dehydrogenase; Provisional
Probab=33.99 E-value=1e+02 Score=33.15 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=47.6
Q ss_pred CCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc-c--cCCCeEEEccChhc---HHHHHHhc-CCCcccEEEEecccC
Q psy2376 416 GQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-I--TDSRFSIIHNCFTE---LDIILKKY-NIKKIDGILFDLGIS 487 (896)
Q Consensus 416 G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~-~--~~~~~~~~~~~~~~---~~~~l~~~-~~~~~d~il~dlG~s 487 (896)
|.||=..++.+++....+|+..|++++.++...+ + ...++.++..+..+ +.+.+++. ..+++|+++.+=|+.
T Consensus 9 Ga~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 9 GAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred CCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 5567777777777666799999999877654432 2 13467777666544 44444331 124799999999975
No 329
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=33.89 E-value=64 Score=34.59 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHhh
Q psy2376 595 NQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 637 (896)
Q Consensus 595 n~el~~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~ 637 (896)
++.++..+..++++.++|+|||++++-. +.-...-+++.+++
T Consensus 211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~ 252 (275)
T PRK09328 211 EDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAA 252 (275)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHh
Confidence 5678889999999999999999998743 22222345666653
No 330
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=33.78 E-value=23 Score=31.31 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhccccCceE
Q psy2376 599 KNLSIALKIGFKKLNIKGRI 618 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~ 618 (896)
+.++..|+++.++|+|||++
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66778899999999999986
No 331
>PRK03612 spermidine synthase; Provisional
Probab=33.63 E-value=8.9e+02 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy2376 6 TFITISSITLFSRITGLFREILFARVFGA 34 (896)
Q Consensus 6 ~a~~l~i~tlls~llG~v~~i~la~~lG~ 34 (896)
...++....+++-+.+++++++++|.+++
T Consensus 15 ~~~~l~~~~f~sg~~~L~yEv~~~r~l~~ 43 (521)
T PRK03612 15 DRALLLAAVFVCAACGLVYELLLGTLASY 43 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888999999999999998886
No 332
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=33.59 E-value=1.3e+02 Score=34.03 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCcHH---HHHHHHcCCCccccCccCcccccceeecccccccCCccCHHHHHHH
Q psy2376 736 KKKRLEQLIINKINLYAYHLPLDMHPKLGNN---AQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHH 812 (896)
Q Consensus 736 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n---~~la~~Lgl~~~~~~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~ 812 (896)
....+..+.++||.|.+-=-..| +.|.. ..+|+.+|++ .+ ++.+. .....+++.+.
T Consensus 60 L~~~L~~~~~~gIkvI~NaGg~n---p~~~a~~v~eia~e~Gl~-lk---------vA~V~--------gDd~~~~v~~~ 118 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITNAGGLN---PAGCADIVREIARELGLS-LK---------VAVVY--------GDDLKDEVKEL 118 (362)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCC---HHHHHHHHHHHHHhcCCC-ee---------EEEEE--------CccchHhHHHH
Confidence 46778889999999986532222 22333 3345566665 22 22221 11122223333
Q ss_pred HHhHhCCCcEEEcCC-----CCceeEEEEEecCchHHHHHHHHcCCcEEEEccCCc
Q psy2376 813 ITRKIGKKPIVIGDL-----NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISE 863 (896)
Q Consensus 813 ~~~~l~~~~~~~g~~-----~~~v~rvai~~Gsg~~~i~~a~~~g~D~~ITGd~~~ 863 (896)
+++-...+.+-.+.+ .+.++-+|. -|..-|.+|.+.|||++|||=...
T Consensus 119 ~~~g~~~~~l~~~~~l~~~~~~~~~a~ay---lGa~pI~~AL~~GADIVI~GR~~D 171 (362)
T PF07287_consen 119 LAEGETIRPLDTGPPLSEWDDRIVSANAY---LGAEPIVEALEAGADIVITGRVAD 171 (362)
T ss_pred HhCCCCCccCCCCCCcchhccccceEEEe---cChHHHHHHHHcCCCEEEeCcccc
Confidence 332211222222221 123333333 577888899999999999997754
No 333
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=33.39 E-value=37 Score=36.79 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecchhHHHHH
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVK 632 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsledr~vk 632 (896)
++++.+++++.++|+|||++++=++-..+.+--.
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~ 176 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA 176 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccchh
Confidence 4567889999999999999997766655554433
No 334
>PRK08263 short chain dehydrogenase; Provisional
Probab=33.00 E-value=1.4e+02 Score=31.95 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcH---HHHHHhc--CCCcccEEEEecccCc
Q psy2376 416 GQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTEL---DIILKKY--NIKKIDGILFDLGISS 488 (896)
Q Consensus 416 G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~--~~~~~d~il~dlG~ss 488 (896)
|.||-...+++++. .+.+|+..|++++.++...+...+++..+..+..+. .+.+++. ..+++|+++.+-|+..
T Consensus 11 asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 89 (275)
T PRK08263 11 ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYGL 89 (275)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCcc
Confidence 55666666666542 345899999999887665443345677776666543 3333221 1347899999999863
No 335
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=32.92 E-value=40 Score=23.37 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCEEEEccC
Q psy2376 703 LDLIKTAVDMNADAILVHHG 722 (896)
Q Consensus 703 ~~vi~~A~~~~~~lIitHHP 722 (896)
.+..+++.+.|+|-|.|-||
T Consensus 10 ~~~~~~~l~~GVDgI~Td~p 29 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDYP 29 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-H
T ss_pred HHHHHHHHHcCCCEeeCCCC
Confidence 45789999999999999997
No 336
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=31.14 E-value=5.5e+02 Score=30.57 Aligned_cols=53 Identities=21% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhccccCceEEEEeecchh------HHHHHHHHhhcCCCCCCCCCCCccccCC
Q psy2376 598 LKNLSIALKIGFKKLNIKGRIVVISFHSLE------DRIVKNFINFNTKIPHIDRRLPIYNYLF 655 (896)
Q Consensus 598 l~~l~~~l~~~~~~l~~~g~~~visfhsle------dr~vk~~~~~~~~~~~~~~~~~~~~~~~ 655 (896)
.++|+++|+++.+..+|. .++|+|=-.=| +.++|++-++ ...|.+.||.....
T Consensus 127 ~~~L~e~I~~~~~~y~P~-~I~V~tTC~~evIGDDi~a~i~~~~~~----~~~p~~~pVi~v~T 185 (515)
T TIGR01286 127 LKNMVDGLQNCYALYKPK-MIAVSTTCMAEVIGDDLNAFIGNAKKE----GFIPDDFPVPFAHT 185 (515)
T ss_pred HHHHHHHHHHHHHhcCCC-EEEEeCCcHHHHhhccHHHHHHHHHHh----cCCCCCCceEEeeC
Confidence 489999999999999986 77888877665 2455554322 23456677754433
No 337
>PRK14967 putative methyltransferase; Provisional
Probab=30.69 E-value=79 Score=32.88 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccccCceEEEE
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVI 621 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~vi 621 (896)
.-++++++++.++|+|||+++++
T Consensus 136 ~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 136 AVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 45788999999999999998875
No 338
>KOG3339|consensus
Probab=30.59 E-value=2.2e+02 Score=28.85 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=26.6
Q ss_pred EccCCChhHHHHHHHc-------CCCcEEEEEeCCHHHHHHhhc
Q psy2376 413 ATFGQGGHSCKILERL-------GKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~-------~~~~~~~~~D~d~~a~~~~~~ 449 (896)
.-+|.||||..+++.+ .|. ..++-|-|+...+.++.
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~y~~r-~yI~a~tD~mS~~k~~~ 85 (211)
T KOG3339|consen 43 VVLGSGGHTGEMLRLLEALQDLYSPR-SYIAADTDEMSEQKARS 85 (211)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhcCce-EEEEecCchhhHHHHHh
Confidence 3689999999887643 333 56688889888777754
No 339
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=30.48 E-value=1.8e+02 Score=31.81 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEec
Q psy2376 703 LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYH 754 (896)
Q Consensus 703 ~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~H 754 (896)
.+..+.|.+.|+|-+...-|.++++..+-...+ .+.+.. ..++.+|-+|
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~-f~~v~~--a~~~pvilYn 137 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAH-VEAVCE--STDLGVIVYQ 137 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHH-HHHHHh--ccCCCEEEEe
Confidence 345677888999999998888776532211122 222222 2456666666
No 340
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=30.22 E-value=40 Score=35.12 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHh
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFIN 636 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~ 636 (896)
+..+.|+++.++|+|||+++++.++.-.-+..|++..
T Consensus 129 ~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 165 (231)
T TIGR02752 129 DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYF 165 (231)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHH
Confidence 3456788899999999999999887755555555443
No 341
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=30.22 E-value=34 Score=32.05 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=31.2
Q ss_pred HhccCHHHHHHHHHHhcCcccHHHHHHHHHHHhc-cCCCcchHHHHH
Q psy2376 522 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS-ITPITRTKQLVE 567 (896)
Q Consensus 522 ~~~~~~~~l~~i~~~yg~~~~~~~~a~~i~~~r~-~~~~~~t~~l~~ 567 (896)
+|+.+.++|..+- .-..+.|++|+++|+ ..|+.+..||.+
T Consensus 62 iNtA~~~eL~~lp------GIG~~~A~~Ii~~R~~~g~f~s~eeL~~ 102 (120)
T TIGR01259 62 INAASLEELQALP------GIGPAKAKAIIEYREENGAFKSVDDLTK 102 (120)
T ss_pred CCcCCHHHHhcCC------CCCHHHHHHHHHHHHhcCCcCCHHHHHc
Confidence 5899999998752 234578999999997 468988888865
No 342
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=30.10 E-value=96 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=26.2
Q ss_pred ChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 418 GGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 418 Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
|-.+..+++..+ ++|+++|.+++-++.++++
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 556778888886 7999999999999998775
No 343
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=29.64 E-value=4.3e+02 Score=29.12 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCccccCc
Q psy2376 703 LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFS 782 (896)
Q Consensus 703 ~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~~~~~~ 782 (896)
.+.++.+++.++++|.+|.+. | .+.++.+.++|+.++..=++.+ ...-++.+|......-.
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~---p---------~~~i~~lk~~g~~v~~~v~s~~-------~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGN---P---------GKYIPRLKENGVKVIPVVASVA-------LAKRMEKAGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCC---c---------HHHHHHHHHcCCEEEEEcCCHH-------HHHHHHHcCCCEEEEEC
Confidence 457788899999999987542 1 2467888889998884222211 11234455654322111
Q ss_pred cCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEc
Q psy2376 783 KNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG 825 (896)
Q Consensus 783 ~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g 825 (896)
...-|+.| +.+.-+++.++++..++|.+..|
T Consensus 138 ~eagGh~g------------~~~~~~ll~~v~~~~~iPviaaG 168 (307)
T TIGR03151 138 MESGGHIG------------ELTTMALVPQVVDAVSIPVIAAG 168 (307)
T ss_pred cccCCCCC------------CCcHHHHHHHHHHHhCCCEEEEC
Confidence 11112222 22345677888877766644444
No 344
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.45 E-value=6.4e+02 Score=25.94 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=66.9
Q ss_pred ecCHHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcC-CeEEEe-cCCCCCCCCCcHHHHHHHHcCCCc
Q psy2376 700 TASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINK-INLYAY-HLPLDMHPKLGNNAQLAKILNFSC 777 (896)
Q Consensus 700 ~~t~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~-I~vy~~-Ht~lD~~~~~G~n~~la~~Lgl~~ 777 (896)
+++.+-+++|.+.|+|+|++-++..-.|.. ....+.++.+.+++ +.+... ||.=| ..-+..+|..-
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~----~~~~~~i~~~~~~g~~~iiv~v~t~~e--------a~~a~~~G~d~ 146 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRPRPDG----ETLAELIKRIHEEYNCLLMADISTLEE--------ALNAAKLGFDI 146 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCC----cCHHHHHHHHHHHhCCeEEEECCCHHH--------HHHHHHcCCCE
Confidence 346677899999999999998877543321 13356677777777 655442 32211 12233445432
Q ss_pred cccCccCcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecC-chHHHHHHHHcCCcEE
Q psy2376 778 TRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGA-AQNLLTDAINEGVTAY 856 (896)
Q Consensus 778 ~~~~~~~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g~~~~~v~rvai~~Gs-g~~~i~~a~~~g~D~~ 856 (896)
... . ..|.-+.- .....+.-++++.+++.++.+ |...+|= ..+-++++.+.|+|.+
T Consensus 147 i~~-~--~~g~t~~~-------~~~~~~~~~~l~~i~~~~~ip-------------via~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 147 IGT-T--LSGYTEET-------AKTEDPDFELLKELRKALGIP-------------VIAEGRINSPEQAAKALELGADAV 203 (219)
T ss_pred EEc-c--Cccccccc-------cCCCCCCHHHHHHHHHhcCCC-------------EEEeCCCCCHHHHHHHHHCCCCEE
Confidence 211 0 00110000 001112235677777655322 2222232 2356778888999999
Q ss_pred EEccC
Q psy2376 857 ISGEI 861 (896)
Q Consensus 857 ITGd~ 861 (896)
+-|.-
T Consensus 204 ~vGsa 208 (219)
T cd04729 204 VVGSA 208 (219)
T ss_pred EEchH
Confidence 88854
No 345
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=29.40 E-value=1.2e+02 Score=35.16 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=49.4
Q ss_pred cCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEE
Q psy2376 415 FGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILF 482 (896)
Q Consensus 415 ~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~ 482 (896)
+|.|.-+..+.+.+.. +..++.+|.|++..+..++.. ..+..+.++-.+. +.|++.+..+.|.++.
T Consensus 237 iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-~~~~~i~gd~~~~-~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 237 VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-PNTLVLHGDGTDQ-ELLEEEGIDEADAFIA 303 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-CCCeEEECCCCCH-HHHHhcCCccCCEEEE
Confidence 6888888888888754 458999999999987765532 3466777776655 4567778888998875
No 346
>PRK06500 short chain dehydrogenase; Provisional
Probab=29.16 E-value=1.4e+02 Score=30.97 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=46.5
Q ss_pred EccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHH---HHHHhc--CCCcccEEEEeccc
Q psy2376 413 ATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELD---IILKKY--NIKKIDGILFDLGI 486 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--~~~~~d~il~dlG~ 486 (896)
.|=|.||-...+.+++.. ..+|+..|++++.++...+....++..++.+..+.. +.++.. ..+++|+++.+-|.
T Consensus 11 ItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 11 ITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 366667777777666533 358999999987765544333456766666654433 222211 12469999988875
Q ss_pred C
Q psy2376 487 S 487 (896)
Q Consensus 487 s 487 (896)
+
T Consensus 91 ~ 91 (249)
T PRK06500 91 A 91 (249)
T ss_pred C
Confidence 4
No 347
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=28.61 E-value=47 Score=38.92 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=37.4
Q ss_pred CCChhhHHHHHHHHHHhhhHHHHH-HHHHHHHhccccCceEE--EEeecchhHHHHHHH-Hhhc
Q psy2376 579 YKNPATRTFQAIRIYINQELKNLS-IALKIGFKKLNIKGRIV--VISFHSLEDRIVKNF-INFN 638 (896)
Q Consensus 579 ~~~~~~~~fqalri~vn~el~~l~-~~l~~~~~~l~~~g~~~--visfhsledr~vk~~-~~~~ 638 (896)
++||-.+-....+ .| .|+..++ +.|++|.++|||||+|+ .-||+.-|+.-|=++ +++.
T Consensus 200 rk~p~~~~~~s~~-~v-~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 200 RKDPDALKNWSPE-SN-LEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred ccCHHHhhhCCHH-HH-HHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 3477654332111 11 2455554 46788899999999997 556888999877554 4543
No 348
>KOG1975|consensus
Probab=28.55 E-value=48 Score=36.34 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=37.5
Q ss_pred cCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhccc
Q psy2376 406 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT 451 (896)
Q Consensus 406 ~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~ 451 (896)
+++.+.|..+|-|||.+.-.+.- -+.+||+|+-.-.++.|++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RY 160 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRY 160 (389)
T ss_pred cccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHH
Confidence 47888899999999998887762 458999999999999998763
No 349
>PF14164 YqzH: YqzH-like protein
Probab=28.32 E-value=1.4e+02 Score=24.63 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCc--------ccHHHHHHHHHHHhccCCCcchHHHHHHHHhhc
Q psy2376 527 EFNIKKVIQDYGEE--------RFAKKIAKEIVHYRSITPITRTKQLVEIILKSI 573 (896)
Q Consensus 527 ~~~l~~i~~~yg~~--------~~~~~~a~~i~~~r~~~~~~~t~~l~~~~~~~~ 573 (896)
+.-+.+-|++||.. +..+.+.+.|.+++...| -.+|.++|..++
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~---~~Dl~eiVeDvV 58 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEP---DEDLHEIVEDVV 58 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHH
Confidence 56788999999864 357888999988876544 357888887765
No 350
>PLN02417 dihydrodipicolinate synthase
Probab=28.27 E-value=3.2e+02 Score=29.57 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEecCCCCCCCCCcHHHHHHHHc
Q psy2376 703 LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 773 (896)
Q Consensus 703 ~~vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~L 773 (896)
.+..+.|.+.|+|-+..+-|.+|++.. ....+.++.+.+.. .++-+|.|-..... ++..+.+.|
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~----~~i~~~f~~va~~~-pi~lYn~P~~tg~~--l~~~~l~~l 149 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQ----EGLIKHFETVLDMG-PTIIYNVPGRTGQD--IPPEVIFKI 149 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCH----HHHHHHHHHHHhhC-CEEEEEChhHhCcC--CCHHHHHHH
Confidence 345677889999999999898776532 22234445555556 88888777654322 334444443
No 351
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.03 E-value=1.6e+02 Score=30.91 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=45.5
Q ss_pred cCCChhHHHHHHHcCCCc-EEEEEeCCHHHHHHhhc-ccCCCeEEEccChhcHHHHHHhcCCCcccEEEEeccc
Q psy2376 415 FGQGGHSCKILERLGKKG-RLIAIDKDTESVSLGNK-ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 486 (896)
Q Consensus 415 ~G~Gghs~~ll~~~~~~~-~~~~~D~d~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ 486 (896)
.|.|-=...+++.+...+ -|+.+|+|++..+.... ....++....+.+ .+.|++.|+...|.++...|-
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~---~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATD---EDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCC---HHHHHhcCCCcCCEEEEeeCC
Confidence 366655566666654443 79999999999877322 1222222233333 456889999999999998874
No 352
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=27.87 E-value=4.2e+02 Score=26.79 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy2376 201 KNIAVRRILKKMGPSVFS 218 (896)
Q Consensus 201 ~~~~lk~ll~~glP~~l~ 218 (896)
+.+.++.++--.+|.++.
T Consensus 37 sdeeik~Il~e~ipqIle 54 (226)
T COG4858 37 SDEEIKIILEEMIPQILE 54 (226)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 467888888888887764
No 353
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=27.72 E-value=92 Score=37.56 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=7.7
Q ss_pred HHHHHHHcCCcEEEE
Q psy2376 844 LLTDAINEGVTAYIS 858 (896)
Q Consensus 844 ~i~~a~~~g~D~~IT 858 (896)
.++.|.+.|.|++||
T Consensus 143 ~i~~a~~~gidvIVt 157 (575)
T PRK11070 143 GVAHAHALGIPVLVT 157 (575)
T ss_pred HHHHHHHCCCCEEEE
Confidence 444445555555554
No 354
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=27.69 E-value=1.5e+02 Score=26.73 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.8
Q ss_pred cCCcEEEEccCCchHHHHHHHcCCeEEEeCC
Q psy2376 851 EGVTAYISGEISESTVYISRESGVAYFAAGH 881 (896)
Q Consensus 851 ~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH 881 (896)
.|||++|||-+.........+.|+.++....
T Consensus 64 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCAKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeehhhCccHHHHHHHCCCEEEEecC
Confidence 7999999999999998888899999996654
No 355
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=27.20 E-value=1.6e+02 Score=30.87 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=48.0
Q ss_pred ccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcH---HHHHHhc--CCCcccEEEEecccC
Q psy2376 414 TFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTEL---DIILKKY--NIKKIDGILFDLGIS 487 (896)
Q Consensus 414 T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~--~~~~~d~il~dlG~s 487 (896)
|=|.||-..++.+++. .+.+|+++|++++.++...+....++.++..+..+. .+.+++. ..+++|+++.+-|++
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~~ 85 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGLA 85 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 5456777777776653 345899999998876554332344677777666543 3333321 123699999999975
Q ss_pred c
Q psy2376 488 S 488 (896)
Q Consensus 488 s 488 (896)
.
T Consensus 86 ~ 86 (248)
T PRK10538 86 L 86 (248)
T ss_pred C
Confidence 3
No 356
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=27.20 E-value=89 Score=32.31 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=34.5
Q ss_pred hHHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEEeCChhhh
Q psy2376 842 QNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATE 885 (896)
Q Consensus 842 ~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~~gH~~sE 885 (896)
.+..+.|.+.|+|.++|+-........+.+.|+.++-..|..+|
T Consensus 73 ~~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E 116 (206)
T PRK09140 73 PEQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTE 116 (206)
T ss_pred HHHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHH
Confidence 36788888899999999888777777777788877777777665
No 357
>PRK07402 precorrin-6B methylase; Provisional
Probab=27.04 E-value=93 Score=31.54 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhccccCceEEEEeecchhHHH-HHHHHhh
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHSLEDRI-VKNFINF 637 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhsledr~-vk~~~~~ 637 (896)
.+++.++.+.+.|+|||++++.+ .+.|+.. +.+.+++
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATA-SSLEGLYAISEGLAQ 157 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe-ecHHHHHHHHHHHHh
Confidence 35778999999999999987765 5666543 5566654
No 358
>PRK04266 fibrillarin; Provisional
Probab=26.94 E-value=85 Score=32.94 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=16.7
Q ss_pred HHHHHHHHhccccCceEEE
Q psy2376 602 SIALKIGFKKLNIKGRIVV 620 (896)
Q Consensus 602 ~~~l~~~~~~l~~~g~~~v 620 (896)
+.+|+.+.+.|||||+++|
T Consensus 156 ~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 4568888999999999998
No 359
>KOG1271|consensus
Probab=26.72 E-value=72 Score=32.17 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=34.9
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~ 450 (896)
...++|.-.|||.--..|++.- -.+++.|.|-.+.|++.|+..
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~ni 110 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNI 110 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHH
Confidence 4589999999998888887763 456799999999999988653
No 360
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=26.62 E-value=84 Score=36.40 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccCceEEEE--eecchhHHH-HHHHHhhc
Q psy2376 602 SIALKIGFKKLNIKGRIVVI--SFHSLEDRI-VKNFINFN 638 (896)
Q Consensus 602 ~~~l~~~~~~l~~~g~~~vi--sfhsledr~-vk~~~~~~ 638 (896)
++.|+.+.++|||||+++.. |++.-|..- |+.|++++
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 56789999999999999864 566667665 46666654
No 361
>PF11055 Gsf2: Glucose signalling factor 2; InterPro: IPR022757 This entry represents fungal Glucose singalling factor 2. Gsf2 is localised to the ER and functions to promote the secretion of certain hexose transporters [].
Probab=26.52 E-value=1.9e+02 Score=32.24 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=60.2
Q ss_pred EEecccCccccCCCCCCccCCCCCCccccCCCCCCCCHHHHHhc----cCHH---HHHHHHHHhcCcccH--HHHHHHHH
Q psy2376 481 LFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLAN----ATEF---NIKKVIQDYGEERFA--KKIAKEIV 551 (896)
Q Consensus 481 l~dlG~ss~q~~~~~rgfs~~~~~~ldmrm~~~~~~~a~~~~~~----~~~~---~l~~i~~~yg~~~~~--~~~a~~i~ 551 (896)
+.++|| ||.+. -|| +-|||=|.. .-|-.+.-++ +|++ +|.+-|+++=|+... .+++.+|-
T Consensus 272 ~~~~Gv---~L~~G-EGf----qTPL~~r~t---~~tf~~~e~~~KF~Ls~eYf~~L~~~~k~ni~~~~gdi~~~n~~Ik 340 (377)
T PF11055_consen 272 AANPGV---QLGEG-EGF----QTPLDERFT---LSTFKTMEEEGKFILSEEYFAELENNFKENIEKCEGDIGKMNEEIK 340 (377)
T ss_pred HhcCCc---cccCC-CCC----CCccccccc---cchHHHHHhcCcEEEcHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345665 66665 688 479998854 3345555444 5665 677778888776666 99999999
Q ss_pred HHhccCCCcchHHHHHHHHhh
Q psy2376 552 HYRSITPITRTKQLVEIILKS 572 (896)
Q Consensus 552 ~~r~~~~~~~t~~l~~~~~~~ 572 (896)
+.|+-+++++..++.++|...
T Consensus 341 ~FRRyGl~e~~~~i~~iV~~R 361 (377)
T PF11055_consen 341 RFRRYGLFESNEKIKKIVELR 361 (377)
T ss_pred HHHhcCCCCCCHHHHHHHHHH
Confidence 999999999999999998653
No 362
>KOG1271|consensus
Probab=26.50 E-value=93 Score=31.42 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHhccccCceEEEEeecchhHHHHHHHHhh
Q psy2376 605 LKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 637 (896)
Q Consensus 605 l~~~~~~l~~~g~~~visfhsledr~vk~~~~~ 637 (896)
+....++|+|||+.+|-|-.-=+|.+|++|=..
T Consensus 164 ~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 164 LDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred hhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence 344456799999999999999999999998665
No 363
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.47 E-value=3.4e+02 Score=27.87 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2376 370 LLILLFCGITYFLALRI 386 (896)
Q Consensus 370 ~i~i~ig~ivY~~ll~l 386 (896)
...+++|++.|.+--++
T Consensus 181 ~~~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYL 197 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555554443
No 364
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=26.38 E-value=64 Score=31.70 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=39.5
Q ss_pred EEEeCCHHHHHHhhccc-------CCCeEEEccChhcHHHHHHhcCCCcccEEEEecccCccccCCCCCCc
Q psy2376 435 IAIDKDTESVSLGNKIT-------DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGF 498 (896)
Q Consensus 435 ~~~D~d~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ss~q~~~~~rgf 498 (896)
.|+|.+++.++.|+++. .+++++++++..+++ ..-..+|.|+..+|... +.|.++.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD~v~~~~~l~~--~~d~~~~l 64 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-----FDDCEFDAVTMGYGLRN--VVDRLRAM 64 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-----CCCCCeeEEEecchhhc--CCCHHHHH
Confidence 38999999999986431 246899999887764 12236999999877644 34444443
No 365
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=26.35 E-value=81 Score=35.39 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhccccCceEEEEeecch-hHHHHHHHHhh
Q psy2376 597 ELKNLSIALKIGFKKLNIKGRIVVISFHSL-EDRIVKNFINF 637 (896)
Q Consensus 597 el~~l~~~l~~~~~~l~~~g~~~visfhsl-edr~vk~~~~~ 637 (896)
..+..+++++++.+.|+|||++.++.-.-| -..+.++.|..
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~ 319 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS 319 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC
Confidence 356788999999999999999987663333 22456666654
No 366
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=26.34 E-value=1.5e+02 Score=31.52 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=38.1
Q ss_pred ccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 389 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 389 ~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
.+.++++.+.+...- .+...++|.-+|.===+.-.+.. +++..++|+|+|.+.++.-++
T Consensus 89 l~~Ld~fY~~if~~~-~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~ 147 (251)
T PF07091_consen 89 LPNLDEFYDEIFGRI-PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNA 147 (251)
T ss_dssp GGGHHHHHHHHCCCS----SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcC-CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHH
Confidence 456677776665431 23578999877766555555644 356799999999999987654
No 367
>PF13470 PIN_3: PIN domain
Probab=25.96 E-value=57 Score=29.93 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.8
Q ss_pred HHHHHHHcCCcEEEEccCC
Q psy2376 844 LLTDAINEGVTAYISGEIS 862 (896)
Q Consensus 844 ~i~~a~~~g~D~~ITGd~~ 862 (896)
++..|.+.+||.+||||.|
T Consensus 101 ~la~A~~~~ad~iVT~D~k 119 (119)
T PF13470_consen 101 VLAAAIAAKADYIVTGDKK 119 (119)
T ss_pred HHHHHHHcCCCEEEeCCCC
Confidence 6777888999999999975
No 368
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.94 E-value=51 Score=34.72 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCEEEEccCCCccCC
Q psy2376 705 LIKTAVDMNADAILVHHGYFWKGE 728 (896)
Q Consensus 705 vi~~A~~~~~~lIitHHP~~f~~~ 728 (896)
..+++++.|+|+||.|||=...+.
T Consensus 199 la~~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 199 LARALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred HHHHHHHCCCCEEEcCCCCcCCCe
Confidence 456677889999999999655443
No 369
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=25.91 E-value=53 Score=34.69 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCEEEEccCCCccCC
Q psy2376 704 DLIKTAVDMNADAILVHHGYFWKGE 728 (896)
Q Consensus 704 ~vi~~A~~~~~~lIitHHP~~f~~~ 728 (896)
+..++.++.|+|+||.|||=...+.
T Consensus 196 ~~A~~l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 196 ELAHALIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred HHHHHHHHcCCCEEEcCCCCcCCce
Confidence 3556666789999999999765554
No 370
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=25.71 E-value=2.5e+02 Score=32.30 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=47.4
Q ss_pred EccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEecccCc
Q psy2376 413 ATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISS 488 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ss 488 (896)
.|=|.||=-.++.+++. .+.+|+++|++++.++...+....++..+..+.++-++..+.. +++|.++.+-|++.
T Consensus 183 ITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l--~~IDiLInnAGi~~ 257 (406)
T PRK07424 183 VTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELL--EKVDILIINHGINV 257 (406)
T ss_pred EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHh--CCCCEEEECCCcCC
Confidence 56677788888777653 3458999999987664321111234556666655555444333 36999999999864
No 371
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=25.62 E-value=3.7e+02 Score=31.07 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=68.4
Q ss_pred HHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEecccCccccCCCCCCccCCC
Q psy2376 423 KILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLL 502 (896)
Q Consensus 423 ~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dlG~ss~q~~~~~rgfs~~~ 502 (896)
.++...+-.|-++.||==....+..++ .--+.|+++|.+++.+..-+++.+..+-+|.---=++|+.||.. .
T Consensus 231 ~~lr~aGy~GLlI~lDE~e~l~kl~~~------~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~--s 302 (416)
T PF10923_consen 231 RFLRDAGYKGLLILLDELENLYKLRND------QAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVY--S 302 (416)
T ss_pred HHHHHcCCCceEEEEechHHHHhcCCh------HHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCcccccc--c
Confidence 345566778899999854444332211 11256788888888776555788999999987777779999963 4
Q ss_pred CCCccccCCCCC----C---CCHHHH-HhccCHHHHHHHHHH
Q psy2376 503 DGPLDMRMDITR----G---ISASKW-LANATEFNIKKVIQD 536 (896)
Q Consensus 503 ~~~ldmrm~~~~----~---~~a~~~-~~~~~~~~l~~i~~~ 536 (896)
-.||.+|+.... + ..+--+ |..++.+||..+..+
T Consensus 303 Y~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~k 344 (416)
T PF10923_consen 303 YEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEK 344 (416)
T ss_pred cHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHH
Confidence 458999987533 1 111111 456777777665543
No 372
>PRK10537 voltage-gated potassium channel; Provisional
Probab=25.59 E-value=5e+02 Score=29.75 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=44.8
Q ss_pred cCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHHHHhcCCCcccEEEEec
Q psy2376 415 FGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 484 (896)
Q Consensus 415 ~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~il~dl 484 (896)
+|.|.-++.+.+.+.+ +..+..+|.|+. ++..++++.+++++-.+ ++.|++.|+++.++++.-.
T Consensus 246 ~G~g~lg~~v~~~L~~~g~~vvVId~d~~-----~~~~~~g~~vI~GD~td-~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 246 CGHSPLAINTYLGLRQRGQAVTVIVPLGL-----EHRLPDDADLIPGDSSD-SAVLKKAGAARARAILALR 310 (393)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECchh-----hhhccCCCcEEEeCCCC-HHHHHhcCcccCCEEEEcC
Confidence 5777777778776533 346788887733 12223457788998876 5678889999999998744
No 373
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=25.49 E-value=58 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHhhhHHHHHHHHHHHHhccccCceEEEE-eecchhH
Q psy2376 592 IYINQELKNLSIALKIGFKKLNIKGRIVVI-SFHSLED 628 (896)
Q Consensus 592 i~vn~el~~l~~~l~~~~~~l~~~g~~~vi-sfhsled 628 (896)
++==.+--.|++.++.|.++|||||++++| ..++|.|
T Consensus 140 ~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~e 177 (248)
T COG4123 140 IARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAE 177 (248)
T ss_pred hhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHH
Confidence 333344455888899999999999999955 4555544
No 374
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.46 E-value=76 Score=33.76 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHHHhccccCceEEEEeecchhHHHHHHHH
Q psy2376 601 LSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFI 635 (896)
Q Consensus 601 l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~ 635 (896)
.+..++.+.++|||||+++++ |++-+....++.+
T Consensus 128 ~~~~l~~~~~~LkpgG~l~i~-~~n~~~~~~~~~~ 161 (255)
T PRK11036 128 PKSVLQTLWSVLRPGGALSLM-FYNANGLLMHNMV 161 (255)
T ss_pred HHHHHHHHHHHcCCCeEEEEE-EECccHHHHHHHH
Confidence 356788999999999999765 4444444444443
No 375
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.40 E-value=2e+02 Score=29.69 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=47.2
Q ss_pred ccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHhh-cc--cCCCeEEEccChhcH---HHHHHhc--CCCcccEEEEec
Q psy2376 414 TFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLGN-KI--TDSRFSIIHNCFTEL---DIILKKY--NIKKIDGILFDL 484 (896)
Q Consensus 414 T~G~Gghs~~ll~~~-~~~~~~~~~D~d~~a~~~~~-~~--~~~~~~~~~~~~~~~---~~~l~~~--~~~~~d~il~dl 484 (896)
|=|.||-...+.+++ ..+.+|+.+|++++..+... ++ .+.++.++..+..+. .+.+++. ..+++|+++.+-
T Consensus 13 tG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 13 TGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNA 92 (239)
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Confidence 446677777776654 23569999999987765432 22 245777777766543 3334321 124799999998
Q ss_pred ccCc
Q psy2376 485 GISS 488 (896)
Q Consensus 485 G~ss 488 (896)
|+..
T Consensus 93 g~~~ 96 (239)
T PRK07666 93 GISK 96 (239)
T ss_pred cccc
Confidence 8753
No 376
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=25.35 E-value=2.1e+02 Score=30.20 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=46.3
Q ss_pred ccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhc---HHHHHHhc--CCCcccEEEEecccC
Q psy2376 414 TFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE---LDIILKKY--NIKKIDGILFDLGIS 487 (896)
Q Consensus 414 T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~--~~~~~d~il~dlG~s 487 (896)
|=|.||--.++.+++. .+.+|+..|++++.++..++...+++..+..+..+ +.+.+++. ..+++|.++.+-|+.
T Consensus 11 tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 11 TGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 5556666666666553 34589999999877655433234567777766654 33333221 124799999999974
No 377
>KOG1270|consensus
Probab=25.30 E-value=91 Score=33.34 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=35.4
Q ss_pred CcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhc
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~ 449 (896)
|.-++|.-+|+|==|.-|.+.- ..|.|+|.-+++++.|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~ 129 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANE 129 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHH
Confidence 4679999999999999988763 589999999999999976
No 378
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=25.17 E-value=2.2e+02 Score=34.24 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=47.9
Q ss_pred ccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhc-c-----------cCCCeEEEccChhcHHHHHHhcCCCcccEE
Q psy2376 414 TFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNK-I-----------TDSRFSIIHNCFTELDIILKKYNIKKIDGI 480 (896)
Q Consensus 414 T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~-~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~d~i 480 (896)
|=|.||=...+++++- .+.+|++++++++..+...+ + ..++++++..+..+.+.+-+.+ +++|.+
T Consensus 86 TGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL--ggiDiV 163 (576)
T PLN03209 86 AGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL--GNASVV 163 (576)
T ss_pred ECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh--cCCCEE
Confidence 5455655555555542 24589999999887654321 1 0146889999888877665543 368999
Q ss_pred EEecccC
Q psy2376 481 LFDLGIS 487 (896)
Q Consensus 481 l~dlG~s 487 (896)
+.+.|..
T Consensus 164 Vn~AG~~ 170 (576)
T PLN03209 164 ICCIGAS 170 (576)
T ss_pred EEccccc
Confidence 9999975
No 379
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=25.12 E-value=1.2e+02 Score=32.96 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=32.6
Q ss_pred HHHHHHHcCCC-EEEEccCCCccCCCCccCChHHHHHHHHHHcC--C-eEEEecCCCCCCC
Q psy2376 705 LIKTAVDMNAD-AILVHHGYFWKGENSNIVGIKKKRLEQLIINK--I-NLYAYHLPLDMHP 761 (896)
Q Consensus 705 vi~~A~~~~~~-lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~--I-~vy~~Ht~lD~~~ 761 (896)
.+++|.+++-. .|+.|||+........ .....+....+.+.. | .+++=||..|...
T Consensus 205 ~L~~a~~~~~~v~I~~HiPp~~~~~~~~-~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 205 ELQEAEQAGEKVWIIGHIPPGVNSYDTL-ENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHHHHCCCeEEEEeccCCCCcccccc-hHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 57777766544 5899999976432211 112222333333333 4 6899999999754
No 380
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=25.07 E-value=90 Score=32.79 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhccccCceEEEEeecchhHHHHHH
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKN 633 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~ 633 (896)
+.+.+++++.+.|+|||++++-.....||+-...
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~ 172 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 172 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH
Confidence 3567899999999999999887665556554433
No 381
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=25.00 E-value=1e+03 Score=26.76 Aligned_cols=58 Identities=17% Similarity=0.356 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPIL 68 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~i 68 (896)
+.|++.-.....+.+.+.+++-..+....+|-+.. +++ ..+..-+. +||.+.+.+|+-
T Consensus 47 Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~-~~~------~~i~lPIm-~GG~GaGavPLS 104 (347)
T TIGR00783 47 LLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD-HSL------MYIVMPIM-AGGVGAGIVPLS 104 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh-Hhh------heeeehhc-CCCcccchhhHH
Confidence 45666666666777777777777777777776422 221 12222233 578999999973
No 382
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=24.81 E-value=1.1e+03 Score=27.16 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=46.4
Q ss_pred eEEEEeecCHHH---HHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEecCCCCCCCCCcHHHHHH
Q psy2376 694 VIVTGVTASLDL---IKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 770 (896)
Q Consensus 694 ~i~~~~~~t~~v---i~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~la 770 (896)
+|..|+=++.+. ++.-.+.||+..+|--.+ + + .+.+....|.+.||.||+.|.-=+.. --+.+-
T Consensus 38 ~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np-~----s----tqd~vaa~l~~~gi~v~a~~~~~~~~----y~~~~~ 104 (413)
T cd00401 38 RIAGCLHMTVQTAVLIETLVALGAEVRWSSCNI-F----S----TQDHAAAAIAAAGIPVFAWKGETLEE----YWWCIE 104 (413)
T ss_pred EEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCC-c----c----chHHHHHHHHhcCceEEEEcCCCHHH----HHHHHH
Confidence 477788888773 444567899999887533 1 1 23456778889999999999754331 244566
Q ss_pred HHcCC
Q psy2376 771 KILNF 775 (896)
Q Consensus 771 ~~Lgl 775 (896)
+.|.+
T Consensus 105 ~~l~~ 109 (413)
T cd00401 105 QALKF 109 (413)
T ss_pred HHHhc
Confidence 67776
No 383
>PRK04457 spermidine synthase; Provisional
Probab=24.81 E-value=75 Score=34.17 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=19.0
Q ss_pred HHHHHHHHhccccCceEEEEeec
Q psy2376 602 SIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 602 ~~~l~~~~~~l~~~g~~~visfh 624 (896)
+++++.+.+.|+|||++++-.++
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCC
Confidence 57889999999999999984433
No 384
>PRK06197 short chain dehydrogenase; Provisional
Probab=24.81 E-value=2.9e+02 Score=29.93 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=50.1
Q ss_pred CcEEEEEccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhc-c----cCCCeEEEccChhcHH---HHHHhc--CCC
Q psy2376 407 NGIYIDATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNK-I----TDSRFSIIHNCFTELD---IILKKY--NIK 475 (896)
Q Consensus 407 ~~~~vD~T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~-~----~~~~~~~~~~~~~~~~---~~l~~~--~~~ 475 (896)
+++++ .|=|+||=..++++++.. +.+|+..+++++..+.+.+ + ...++.++..+..+.+ +.+++. ..+
T Consensus 16 ~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 44443 566667666666665433 3489999999876554422 2 1346778777766543 333322 134
Q ss_pred cccEEEEecccCc
Q psy2376 476 KIDGILFDLGISS 488 (896)
Q Consensus 476 ~~d~il~dlG~ss 488 (896)
++|.++.+-|+.+
T Consensus 95 ~iD~li~nAg~~~ 107 (306)
T PRK06197 95 RIDLLINNAGVMY 107 (306)
T ss_pred CCCEEEECCcccc
Confidence 7999999999754
No 385
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=24.80 E-value=96 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=39.0
Q ss_pred ccCHHHHHH---HHHhHhCCCcEE--Ec----CCC--Ccee----EEEEEecCc---hHHHHHHHHcCCcEEEEccCCch
Q psy2376 803 IITIKDLFH---HITRKIGKKPIV--IG----DLN--KKIY----EIGWCTGAA---QNLLTDAINEGVTAYISGEISES 864 (896)
Q Consensus 803 ~~~~~el~~---~~~~~l~~~~~~--~g----~~~--~~v~----rvai~~Gsg---~~~i~~a~~~g~D~~ITGd~~~h 864 (896)
|.+-+|++. ...+.||.+.++ +| +|. +.|+ +.-+.-|+| .+.-++..++|||+.+||++-|.
T Consensus 146 p~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 146 PLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred CCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 344444433 345678888764 44 221 1222 224455666 35666667789999999999887
Q ss_pred HH
Q psy2376 865 TV 866 (896)
Q Consensus 865 ~~ 866 (896)
+-
T Consensus 226 ~~ 227 (240)
T COG1646 226 DP 227 (240)
T ss_pred CH
Confidence 65
No 386
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=24.77 E-value=74 Score=33.02 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccccCceEEEEeecc
Q psy2376 601 LSIALKIGFKKLNIKGRIVVISFHS 625 (896)
Q Consensus 601 l~~~l~~~~~~l~~~g~~~visfhs 625 (896)
-++.++...++|+|||++.+++|+-
T Consensus 131 R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 131 RQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 4667888999999999999999964
No 387
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=24.75 E-value=1.1e+02 Score=33.37 Aligned_cols=65 Identities=23% Similarity=0.186 Sum_probs=45.1
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHHHH-HHhcCCCcccEEEE
Q psy2376 409 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDII-LKKYNIKKIDGILF 482 (896)
Q Consensus 409 ~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~d~il~ 482 (896)
.++|.-.|.||-+..+-+.- --.+.|+|+|+.|.+.-+..+. ...+.+-.+++.- ++. .+|.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~---~~~~~Di~~~~~~~l~~----~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP---EVICGDITEIDPSDLPK----DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT---EEEESHGGGCHHHHHHH----T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc---ccccccccccccccccc----cceEEEe
Confidence 47999999999999988863 3479999999999987766544 6666666665533 221 2776654
No 388
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=24.68 E-value=95 Score=32.84 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhccccCceEEEEeecc
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFHS 625 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfhs 625 (896)
.++..|.++.++|+|||++++.+|..
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 35678899999999999999988765
No 389
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.57 E-value=8.7e+02 Score=26.09 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCEEEEccCCCccCCCCccCChHHHHHHHHHHcCCeEEEecCCCCCCCCCcHHHHHHHHcCCCc-cccCcc
Q psy2376 705 LIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSC-TRRFSK 783 (896)
Q Consensus 705 vi~~A~~~~~~lIitHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~la~~Lgl~~-~~~~~~ 783 (896)
-+++|.+.|+|-+|.|-=+ + ....+....+.++|+...-.=+|=-. -+.+.+...... .-..-
T Consensus 111 F~~~~~~aGvdgviipDLP-~--------ee~~~~~~~~~~~gi~~I~lv~PtT~------~eri~~i~~~a~gFIY~v- 174 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLP-Y--------EESDYLISVCNLYNIELILLIAPTSS------KSRIQKIARAAPGCIYLV- 174 (263)
T ss_pred HHHHHHHcCCeEEEecCCC-H--------HHHHHHHHHHHHcCCCEEEEECCCCC------HHHHHHHHHhCCCcEEEE-
Confidence 6899999999999998522 1 12356777889998876544333211 122222222211 00000
Q ss_pred CcccccceeecccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc---hHHHHHHHHcCCcEEEEcc
Q psy2376 784 NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA---QNLLTDAINEGVTAYISGE 860 (896)
Q Consensus 784 ~~~g~~g~i~~~~~~~~~~~~~~~el~~~~~~~l~~~~~~~g~~~~~v~rvai~~Gsg---~~~i~~a~~~g~D~~ITGd 860 (896)
...|.-|.= -.-+..+.++++++|+..+.| |++ |.| .+..+++.+.|||-+|.|-
T Consensus 175 S~~GvTG~~-------~~~~~~~~~~i~~ir~~t~~P-------------i~v--GFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 175 STTGVTGLK-------TELDKKLKKLIETIKKMTNKP-------------IIL--GFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred cCCCCCCCC-------ccccHHHHHHHHHHHHhcCCC-------------EEE--ECCcCCHHHHHHHHhcCCCEEEECH
Confidence 011222220 012346788888888755433 222 444 3467777778889888886
Q ss_pred C
Q psy2376 861 I 861 (896)
Q Consensus 861 ~ 861 (896)
-
T Consensus 233 a 233 (263)
T CHL00200 233 A 233 (263)
T ss_pred H
Confidence 3
No 390
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.55 E-value=2.4e+02 Score=29.20 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=46.0
Q ss_pred EccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhc-c--cCCCeEEEccChhcHHH---HHHhc--CCCcccEEEEe
Q psy2376 413 ATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNK-I--TDSRFSIIHNCFTELDI---ILKKY--NIKKIDGILFD 483 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~-~--~~~~~~~~~~~~~~~~~---~l~~~--~~~~~d~il~d 483 (896)
.|=|+||=...+.+.+- .+.+|+++|++++..+...+ + ...++.++..+..+-+. .+++. ..+++|+++..
T Consensus 12 ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 91 (250)
T PRK12939 12 VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNN 91 (250)
T ss_pred EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 34445555555554442 23589999999886654432 2 23567888777765432 23221 12479999999
Q ss_pred cccCcc
Q psy2376 484 LGISSN 489 (896)
Q Consensus 484 lG~ss~ 489 (896)
-|++..
T Consensus 92 ag~~~~ 97 (250)
T PRK12939 92 AGITNS 97 (250)
T ss_pred CCCCCC
Confidence 998643
No 391
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=24.10 E-value=75 Score=34.14 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccccCceEEEEeec
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
..++.++.+.++|||||++++..+.
T Consensus 134 d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 134 DKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4667899999999999999987653
No 392
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=23.96 E-value=76 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHH
Q psy2376 543 AKKIAKEIVHYRSITPITRTKQLVEII 569 (896)
Q Consensus 543 ~~~~a~~i~~~r~~~~~~~t~~l~~~~ 569 (896)
....|+.|+++|+.+|+++-.|+.+-+
T Consensus 36 g~~~a~~I~~~R~~g~f~s~~df~~R~ 62 (90)
T PF14579_consen 36 GEEVAEKIVEERENGPFKSLEDFIQRL 62 (90)
T ss_dssp -HHHHHHHHHHHHCSS-SSHHHHHHHS
T ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHH
Confidence 567899999999999999887776643
No 393
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=23.74 E-value=1.3e+03 Score=27.52 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh---Ccch-hhhHHHHHHHHHHHHHHHHH
Q psy2376 5 KTFITISSITLFSRITGLFREILFARVF---GASI-YTDAFNIAFRIPNLLRRLFA 56 (896)
Q Consensus 5 k~a~~l~i~tlls~llG~v~~i~la~~l---G~s~-~~da~~~a~~i~~~l~~i~~ 56 (896)
++.-.+.+++++|.+-..++++.++.++ ..|+ ..+....+..+|.++.++++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~a 65 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFA 65 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777766655543 3332 33344556666666665543
No 394
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=23.61 E-value=77 Score=34.76 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccccCceEEEEeec
Q psy2376 600 NLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
...+.|+++.+.|+||||++|+-+.
T Consensus 232 ~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 232 LSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4466799999999999999999864
No 395
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=23.58 E-value=5.7e+02 Score=27.35 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHhhcC
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNT 639 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~~~ 639 (896)
.+-+...+.|.+.+ .|+++..+| + -+.|++|+.+..
T Consensus 72 ~~~~~~~~~A~~~i-~~dvILT~s-~---S~~v~~~l~~~~ 107 (253)
T PRK06372 72 KHEKMAIEHAKPLF-NDSVIGTIS-S---SQVLKAFISSSE 107 (253)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEeC-C---cHHHHHHHHhcC
Confidence 56666777788888 556665555 3 357888886543
No 396
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=23.33 E-value=2.5e+02 Score=30.69 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=50.8
Q ss_pred chHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcc-----cCCCeEEEccC
Q psy2376 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKI-----TDSRFSIIHNC 461 (896)
Q Consensus 391 m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~-----~~~~~~~~~~~ 461 (896)
.+++.+..|... ...-.++|...|-|.+-.-.++..+. ...+.--|-++..++..+++ +++-++|.+.+
T Consensus 122 ~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~d 196 (311)
T PF12147_consen 122 LIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGD 196 (311)
T ss_pred HHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecC
Confidence 334455555432 12357899999999999999999875 35888999999999988764 34556887776
No 397
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=23.27 E-value=1.6e+02 Score=28.12 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHHhHhCCCcEEEcC------CCCceeEEEEEecCch--HHHHHHHHcCCcEEEEccCCchHHHHHHHcCCeEEE-eCC
Q psy2376 811 HHITRKIGKKPIVIGD------LNKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEISESTVYISRESGVAYFA-AGH 881 (896)
Q Consensus 811 ~~~~~~l~~~~~~~g~------~~~~v~rvai~~Gsg~--~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~li~-~gH 881 (896)
-++.++++++.+.+.+ ....++.|-|-.|.-+ ..|-+..+.| |+.||.|+.- |..+.+.|..+++ =|+
T Consensus 3 ~~~a~r~~i~vi~Van~~h~~~~~~~~~~i~Vd~g~DaaD~~I~~~~~~g-DiVITqDigL--A~~~l~Kga~vl~~rG~ 79 (130)
T PF02639_consen 3 IRVAKRYGIPVIFVANYSHRLPRSPYVEMIVVDSGFDAADFYIVNHAKPG-DIVITQDIGL--ASLLLAKGAYVLNPRGK 79 (130)
T ss_pred HHHHHHHCCEEEEEeCCCccCCCCCCeEEEEECCCCChHHHHHHHcCCCC-CEEEECCHHH--HHHHHHCCCEEECCCCC
Confidence 4667788988774332 2255777777777664 3454445555 9999999754 4456678888887 444
Q ss_pred hhh
Q psy2376 882 HAT 884 (896)
Q Consensus 882 ~~s 884 (896)
..|
T Consensus 80 ~yt 82 (130)
T PF02639_consen 80 EYT 82 (130)
T ss_pred CCC
Confidence 333
No 398
>COG4129 Predicted membrane protein [Function unknown]
Probab=23.27 E-value=7.7e+02 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Q psy2376 4 HKTFITISSITLFSRITGLFREILFARVFGASIYT 38 (896)
Q Consensus 4 ~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~ 38 (896)
.+.++-.....+++..+|.+.-.++...+|.+...
T Consensus 50 ~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~ 84 (332)
T COG4129 50 IKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIA 84 (332)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34566677788889999999999999999986543
No 399
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.19 E-value=4.5e+02 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.334 Sum_probs=19.0
Q ss_pred EEecCc---hHHHHHHHHcCCcEEEEcc
Q psy2376 836 WCTGAA---QNLLTDAINEGVTAYISGE 860 (896)
Q Consensus 836 i~~Gsg---~~~i~~a~~~g~D~~ITGd 860 (896)
++.|+| .+-++++.+.|||.++.|-
T Consensus 188 i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 188 LVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 344555 4678888899999999995
No 400
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=81 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHH
Q psy2376 543 AKKIAKEIVHYRSITPITRTKQLVEII 569 (896)
Q Consensus 543 ~~~~a~~i~~~r~~~~~~~t~~l~~~~ 569 (896)
.++..++|.+.|+++||++-.|+.+-|
T Consensus 139 GkK~m~~ILeERkkkpFeSFeDi~~Rv 165 (202)
T COG1491 139 GKKTMWAILEERKKKPFESFEDIKERV 165 (202)
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 478899999999999999999988865
No 401
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=23.11 E-value=1.8e+02 Score=31.21 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=21.5
Q ss_pred EEEecCCCCCCCCCcHHHHHHHHcCCC
Q psy2376 750 LYAYHLPLDMHPKLGNNAQLAKILNFS 776 (896)
Q Consensus 750 vy~~Ht~lD~~~~~G~n~~la~~Lgl~ 776 (896)
-.|.|-|||.....+--...|+.+||.
T Consensus 96 ~VsLHIPWDKved~~~Lke~a~~~GL~ 122 (430)
T COG4952 96 SVSLHIPWDKVEDPERLKEFASALGLG 122 (430)
T ss_pred ceeeecChhcccCHHHHHHHHHhcCCC
Confidence 368999999986546667788999986
No 402
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.07 E-value=3.3e+02 Score=28.59 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=43.4
Q ss_pred ChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcccCCCeEEEccChhc---HHHHHHhc--CCCcccEEEEecccCc
Q psy2376 418 GGHSCKILERLG-KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE---LDIILKKY--NIKKIDGILFDLGISS 488 (896)
Q Consensus 418 Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~--~~~~~d~il~dlG~ss 488 (896)
+|=-+++.+++. ...+|+..++++...+..++...+++..+..+..+ +.+.+++. ..+++|.++.|-|+..
T Consensus 19 ~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~ 95 (252)
T PRK06079 19 RSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAYAK 95 (252)
T ss_pred CchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEcccccc
Confidence 466666666653 35689999998654444444434566777666543 33333221 1247999999999864
No 403
>KOG1099|consensus
Probab=23.06 E-value=1.3e+02 Score=31.47 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=60.6
Q ss_pred hcccchHHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCC----Cc----EEEEEeCCHHHHHHhhcccCCCeEEE
Q psy2376 387 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGK----KG----RLIAIDKDTESVSLGNKITDSRFSII 458 (896)
Q Consensus 387 l~~~m~~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~----~~----~~~~~D~d~~a~~~~~~~~~~~~~~~ 458 (896)
+|..-++|-.+++.. -..+||.+.--|--|+-+-+++-+ ++ +++++|.|+.|= =+.+.-+
T Consensus 27 FKLlqideef~i~~g-----v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-------I~GV~ql 94 (294)
T KOG1099|consen 27 FKLLQIDEEFQIFEG-----VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-------IEGVIQL 94 (294)
T ss_pred HHHhhhhhhhhHHhh-----hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-------cCceEEe
Confidence 344556777777765 468899999999999888877643 22 399999998772 1235555
Q ss_pred ccCh---hcHHHHHHhcCCCcccEEEEe
Q psy2376 459 HNCF---TELDIILKKYNIKKIDGILFD 483 (896)
Q Consensus 459 ~~~~---~~~~~~l~~~~~~~~d~il~d 483 (896)
++.. +....+++-+|-.+.|.++-|
T Consensus 95 q~DIT~~stae~Ii~hfggekAdlVvcD 122 (294)
T KOG1099|consen 95 QGDITSASTAEAIIEHFGGEKADLVVCD 122 (294)
T ss_pred ecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence 5543 457778888887788888865
No 404
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.97 E-value=2e+02 Score=27.45 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCEEE----EccCCCccCCCCc------cCChHHHHHHHHHHcCCeEEEecCCC
Q psy2376 704 DLIKTAVDMNADAIL----VHHGYFWKGENSN------IVGIKKKRLEQLIINKINLYAYHLPL 757 (896)
Q Consensus 704 ~vi~~A~~~~~~lIi----tHHP~~f~~~~~~------~~~~~~~~~~~l~~~~I~vy~~Ht~l 757 (896)
+.++...+.++|.|+ +||.+-|-|.+-- ..+..++.++.+.++||.|++..+.-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 356777788888776 4788777665431 13567999999999999999988753
No 405
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.89 E-value=1.6e+02 Score=31.45 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=38.1
Q ss_pred chHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCceEEEEeecc
Q psy2376 561 RTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 625 (896)
Q Consensus 561 ~t~~l~~~~~~~~~~~~~~~~~~~~~fqalri~vn~el~~l~~~l~~~~~~l~~~g~~~visfhs 625 (896)
+|.|+.+.+.+.- .+++||.+ .+++++++.++.+.+.|+.|||+.++---+
T Consensus 9 ~~~~~~~~~~~~~----------~~~~~av~----~~l~~I~~av~~~~~~l~~ggrl~~~GaGt 59 (257)
T cd05007 9 STLEILRLLNEED----------KKVAAAVE----AALPQIARAVDAAAERLRAGGRLIYVGAGT 59 (257)
T ss_pred CHHHHHHHHHHHH----------HHHHHHHH----HhHHHHHHHHHHHHHHHHcCCEEEEEcCcH
Confidence 5677777664432 44666644 667899999999999999999999887544
No 406
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=22.87 E-value=79 Score=34.40 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccccCceEEEEeecchhH
Q psy2376 599 KNLSIALKIGFKKLNIKGRIVVISFHSLED 628 (896)
Q Consensus 599 ~~l~~~l~~~~~~l~~~g~~~visfhsled 628 (896)
+.....++.+.++|+|||+++++.+.+-+|
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~ 229 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTED 229 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 366788999999999999999888777665
No 407
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=22.85 E-value=1.2e+02 Score=30.88 Aligned_cols=36 Identities=14% Similarity=-0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHhccccCceEEEEeecchhHHHHHHHHhh
Q psy2376 602 SIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 637 (896)
Q Consensus 602 ~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~~ 637 (896)
+.+++.+.++|||||++.+.|-+----.-+.+.+++
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 667889999999999999998766433334444443
No 408
>PRK07478 short chain dehydrogenase; Provisional
Probab=22.66 E-value=3e+02 Score=28.69 Aligned_cols=75 Identities=7% Similarity=0.021 Sum_probs=45.2
Q ss_pred EccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhc-c--cCCCeEEEccChhcHH---HHHHhc--CCCcccEEEEe
Q psy2376 413 ATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNK-I--TDSRFSIIHNCFTELD---IILKKY--NIKKIDGILFD 483 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~-~--~~~~~~~~~~~~~~~~---~~l~~~--~~~~~d~il~d 483 (896)
.|=|.||=..++.+++.. ..+|+..|++++..+...+ + ...++.++..+..+-+ +.+++. ..+++|+++.+
T Consensus 11 ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 90 (254)
T PRK07478 11 ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNN 90 (254)
T ss_pred EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 455555555555544422 3589999999887765532 2 2346777776665433 222211 12379999999
Q ss_pred cccC
Q psy2376 484 LGIS 487 (896)
Q Consensus 484 lG~s 487 (896)
-|+.
T Consensus 91 ag~~ 94 (254)
T PRK07478 91 AGTL 94 (254)
T ss_pred CCCC
Confidence 9986
No 409
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=22.30 E-value=71 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhccccCceEEEEeec
Q psy2376 598 LKNLSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 598 l~~l~~~l~~~~~~l~~~g~~~visfh 624 (896)
.++|+.++....+.|+|||.+++=|++
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 467888899999999999999999885
No 410
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.89 E-value=56 Score=30.34 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.3
Q ss_pred HHHHHHHhccccCceEEEEeecc
Q psy2376 603 IALKIGFKKLNIKGRIVVISFHS 625 (896)
Q Consensus 603 ~~l~~~~~~l~~~g~~~visfhs 625 (896)
..++.+.++|++||+++++.+++
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 35777888999999999999998
No 411
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=21.87 E-value=2.7e+02 Score=29.26 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcccCCCeEEEccChhc---HHHHHHhc--CCCcccEEEEecccC
Q psy2376 416 GQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE---LDIILKKY--NIKKIDGILFDLGIS 487 (896)
Q Consensus 416 G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~--~~~~~d~il~dlG~s 487 (896)
|.||=..++.+++-. +.+|+..|++++.++...+...+++..+..+..+ +.+.+++. ..+++|.++.+-|+.
T Consensus 14 as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 14 GGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 444444444444322 4589999999887765543334566666655443 33333321 124799999999975
No 412
>KOG1122|consensus
Probab=21.78 E-value=2e+02 Score=32.88 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=38.0
Q ss_pred ccCcEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh
Q psy2376 405 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG 447 (896)
Q Consensus 405 ~~~~~~vD~T~G~Gghs~~ll~~~~~~~~~~~~D~d~~a~~~~ 447 (896)
+||..++|++.--||-|.+|+......|.|+|.|....-++.-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l 282 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSL 282 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHH
Confidence 4699999999999999999999998899999999887665543
No 413
>PRK13760 putative RNA-associated protein; Provisional
Probab=21.63 E-value=1.5e+02 Score=31.11 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=19.7
Q ss_pred chHHHHHHHHh-hccCCCCCCChhhHHHHHHH
Q psy2376 561 RTKQLVEIILK-SIRGNKRYKNPATRTFQAIR 591 (896)
Q Consensus 561 ~t~~l~~~~~~-~~~~~~~~~~~~~~~fqalr 591 (896)
..+|.+++|.+ ++.+..++-||.+|+=+||+
T Consensus 99 k~r~Ii~~Ia~~~vnP~T~~P~p~~rIE~Am~ 130 (231)
T PRK13760 99 KRRQIINFIARNAINPQTGLPHPPQRIENAME 130 (231)
T ss_pred HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 34677787764 45444445699998755543
No 414
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=21.45 E-value=1.4e+02 Score=29.91 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccccCceEEE
Q psy2376 600 NLSIALKIGFKKLNIKGRIVV 620 (896)
Q Consensus 600 ~l~~~l~~~~~~l~~~g~~~v 620 (896)
.+++.++.+.+.|+|||++++
T Consensus 109 ~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 109 NLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEE
Confidence 345668889999999999865
No 415
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=21.28 E-value=1.3e+02 Score=32.69 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHhccccCceEEEEeecchhHHHHHHHHh
Q psy2376 595 NQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFIN 636 (896)
Q Consensus 595 n~el~~l~~~l~~~~~~l~~~g~~~visfhsledr~vk~~~~ 636 (896)
++-++..++.++++.++|+|||++++-.-++-.+. |++.++
T Consensus 217 ~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~-~~~~~~ 257 (284)
T TIGR00536 217 DDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKS-LKELLR 257 (284)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH-HHHHHH
Confidence 44578899999999999999999987666666664 445554
No 416
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=21.22 E-value=4.8e+02 Score=29.18 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.8
Q ss_pred HHHHHHhccccCceEEEEeecchhH
Q psy2376 604 ALKIGFKKLNIKGRIVVISFHSLED 628 (896)
Q Consensus 604 ~l~~~~~~l~~~g~~~visfhsled 628 (896)
+++++.++++|||++++++.+.-++
T Consensus 251 ~~~~ai~~~r~gG~v~~vGv~~~~~ 275 (350)
T COG1063 251 ALDQALEALRPGGTVVVVGVYGGED 275 (350)
T ss_pred HHHHHHHHhcCCCEEEEEeccCCcc
Confidence 7888999999999999999998774
No 417
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=20.99 E-value=1.3e+02 Score=34.92 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccccCceEEEE--eecchhHHHH-HHHHhhc
Q psy2376 601 LSIALKIGFKKLNIKGRIVVI--SFHSLEDRIV-KNFINFN 638 (896)
Q Consensus 601 l~~~l~~~~~~l~~~g~~~vi--sfhsledr~v-k~~~~~~ 638 (896)
.++.|+.+.++|||||+++.. |++..|..-+ +.++++.
T Consensus 351 q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 351 QSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 357899999999999999855 4666665544 5566553
No 418
>PRK08267 short chain dehydrogenase; Provisional
Probab=20.93 E-value=2.3e+02 Score=29.78 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhhcc-cCCCeEEEccChhcHH---HHHHhc---CCCcccEEEEecccC
Q psy2376 416 GQGGHSCKILERLG-KKGRLIAIDKDTESVSLGNKI-TDSRFSIIHNCFTELD---IILKKY---NIKKIDGILFDLGIS 487 (896)
Q Consensus 416 G~Gghs~~ll~~~~-~~~~~~~~D~d~~a~~~~~~~-~~~~~~~~~~~~~~~~---~~l~~~---~~~~~d~il~dlG~s 487 (896)
|+||=...+.+++. ...+|+.+|++++.++...+. .+.++.+++.+..+-+ +.+++. ..+++|.++-+-|+.
T Consensus 9 asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 9 AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 34444444444332 235899999999887665432 2457888877766543 333321 034789999999875
Q ss_pred c
Q psy2376 488 S 488 (896)
Q Consensus 488 s 488 (896)
.
T Consensus 89 ~ 89 (260)
T PRK08267 89 R 89 (260)
T ss_pred C
Confidence 4
No 419
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.88 E-value=3.4e+02 Score=28.47 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=44.8
Q ss_pred ccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhccc--CCCeEEEccChhcHHHH---HHhc--CCCcccEEEEecc
Q psy2376 414 TFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDII---LKKY--NIKKIDGILFDLG 485 (896)
Q Consensus 414 T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~--~~~~~~~~~~~~~~~~~---l~~~--~~~~~d~il~dlG 485 (896)
|=|.||=...+.+++.. +.+|+.+|++++.++...+.. ..++.++..+..+-+++ +++. ..+++|.++.+-|
T Consensus 8 tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 8 TGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAG 87 (257)
T ss_pred EcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 44455555555555432 358999999998876553321 12677887776654332 2221 1236899999988
Q ss_pred cCc
Q psy2376 486 ISS 488 (896)
Q Consensus 486 ~ss 488 (896)
++.
T Consensus 88 ~~~ 90 (257)
T PRK07024 88 ISV 90 (257)
T ss_pred cCC
Confidence 753
No 420
>PRK10711 hypothetical protein; Provisional
Probab=20.83 E-value=1e+03 Score=25.16 Aligned_cols=87 Identities=13% Similarity=0.187 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKK 82 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~ 82 (896)
+.|....+.++.+++.+.+++....+++.+|.++.. ..++. |-. +.+.+.--+++..| +.+.
T Consensus 84 lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~-~~Sl~---pkS---------VTtPIAm~is~~iG-G~~s---- 145 (231)
T PRK10711 84 IRARWKSIISICFIGSVVAMVTGTAVALWMGATPEI-AASIL---PKS---------VTTPIAMAVGGSIG-GIPA---- 145 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH-HHHHh---hhh---------hhHHHHHHHHHHhC-CcHH----
Confidence 567788899999999999999999999999987543 11111 111 11122222344443 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2376 83 LIDHVATVLIWFMFFICVFGIIMAPIIVYLVA 114 (896)
Q Consensus 83 ~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~ 114 (896)
+...+-++..+++.+++|++.+++.
T Consensus 146 -------Lta~~ViitGi~Ga~~g~~llk~~r 170 (231)
T PRK10711 146 -------ISAVCVIFVGILGAVFGHTLLNAMR 170 (231)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2333444555677888999999884
No 421
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=20.58 E-value=9.7e+02 Score=24.93 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhHHHHhcCHHHHHH
Q psy2376 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKK 82 (896)
Q Consensus 3 l~k~a~~l~i~tlls~llG~v~~i~la~~lG~s~~~da~~~a~~i~~~l~~i~~~ggls~a~ip~is~~~~~~~~~~~~~ 82 (896)
+.|....+..+.+++.+.+++...++++.+|-++.. ..+++ .- ...+.+.--+++..| ++..
T Consensus 73 l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~-~~Sl~-----------pk-SVTtpiAi~is~~iG-G~~s---- 134 (215)
T PF04172_consen 73 LKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEI-ILSLA-----------PK-SVTTPIAIEISEQIG-GIPS---- 134 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH-HHHHH-----------HH-HhhHHHHHHHHHHhC-ChHH----
Confidence 567888899999999999999999999999986543 21111 11 122222223445444 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2376 83 LIDHVATVLIWFMFFICVFGIIMAPIIVYLVA 114 (896)
Q Consensus 83 ~~~~~~~l~li~~lli~ll~~l~a~~I~~~l~ 114 (896)
+...+-++..+++.++.|++.+++.
T Consensus 135 -------Lta~~VvitGi~Ga~~g~~llk~~~ 159 (215)
T PF04172_consen 135 -------LTAVFVVITGILGAVLGPPLLKLLR 159 (215)
T ss_pred -------HHHHHHHHHhhHHHHhHHHHHhHcc
Confidence 2223333444566677889999874
No 422
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=20.57 E-value=77 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.032 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccccCceEEEEeec
Q psy2376 601 LSIALKIGFKKLNIKGRIVVISFH 624 (896)
Q Consensus 601 l~~~l~~~~~~l~~~g~~~visfh 624 (896)
.+..|+...++|||||++++.+..
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 667889999999999998877654
No 423
>KOG2361|consensus
Probab=20.37 E-value=1.4e+02 Score=31.53 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHhhhccccccccCcEEEEEccCCChhHHHHHHHcCCC--cEEEEEeCCHHHHHHhhc
Q psy2376 393 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKK--GRLIAIDKDTESVSLGNK 449 (896)
Q Consensus 393 ~e~l~~L~~~~~~~~~~~vD~T~G~Gghs~~ll~~~~~~--~~~~~~D~d~~a~~~~~~ 449 (896)
+|.=+++... +++...+...-+|.|+-+.-||+-. ++ .+|+++|-.|.|++..++
T Consensus 59 ~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 59 REFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred HhhHHhhCcc-ccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHh
Confidence 4444444432 1233478899999999999999986 45 899999999999998865
No 424
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=20.32 E-value=1.3e+02 Score=29.81 Aligned_cols=36 Identities=28% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhccccCceEEEEeecc
Q psy2376 588 QAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 625 (896)
Q Consensus 588 qalri~vn~el~~l~~~l~~~~~~l~~~g~~~visfhs 625 (896)
|.-.|.-|+|| |..++++|.++|+++|++.|--.-.
T Consensus 93 ~~~~i~~nr~L--l~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 93 GKRNIRLNREL--LRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred hhHHHHHHHHH--HHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45567788887 6899999999999999998865544
No 425
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.29 E-value=4.9e+02 Score=27.18 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2376 77 NIATKKLIDHVATVLIWFMFFICVFGIIMA 106 (896)
Q Consensus 77 ~~~~~~~~~~~~~l~li~~lli~ll~~l~a 106 (896)
.++..+.+-.++..++++.+++++++.+.+
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~ 172 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTIGS 172 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 333444444444444444444444444433
No 426
>PRK05866 short chain dehydrogenase; Provisional
Probab=20.27 E-value=2.6e+02 Score=30.27 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=48.3
Q ss_pred EccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhc-c--cCCCeEEEccChh---cHHHHHHhc--CCCcccEEEEe
Q psy2376 413 ATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNK-I--TDSRFSIIHNCFT---ELDIILKKY--NIKKIDGILFD 483 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~-~--~~~~~~~~~~~~~---~~~~~l~~~--~~~~~d~il~d 483 (896)
.|=|+||-..++.+.+.. +.+|+.+|++++.++...+ + ...++.++..+.. .+.+.++.. ..+++|.++.+
T Consensus 45 ItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~ 124 (293)
T PRK05866 45 LTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINN 124 (293)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 466778888787776533 4589999999887765432 2 2345666655544 444444421 23479999999
Q ss_pred cccC
Q psy2376 484 LGIS 487 (896)
Q Consensus 484 lG~s 487 (896)
-|+.
T Consensus 125 AG~~ 128 (293)
T PRK05866 125 AGRS 128 (293)
T ss_pred CCCC
Confidence 9974
No 427
>PRK08265 short chain dehydrogenase; Provisional
Probab=20.21 E-value=2.5e+02 Score=29.62 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=45.6
Q ss_pred EccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhhcccCCCeEEEccChhcHH---HHHHhc--CCCcccEEEEeccc
Q psy2376 413 ATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELD---IILKKY--NIKKIDGILFDLGI 486 (896)
Q Consensus 413 ~T~G~Gghs~~ll~~~~~-~~~~~~~D~d~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--~~~~~d~il~dlG~ 486 (896)
.|=|.||=..++.+++.. +.+|+..|++++..+...+....++.++..+..+-+ +.+++. ..+++|+++.+-|+
T Consensus 11 ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 11 VTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 354556655555555432 458999999988665443323556777777665433 333221 12469999999886
Q ss_pred C
Q psy2376 487 S 487 (896)
Q Consensus 487 s 487 (896)
.
T Consensus 91 ~ 91 (261)
T PRK08265 91 Y 91 (261)
T ss_pred C
Confidence 4
No 428
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=20.10 E-value=1.9e+02 Score=32.55 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=36.2
Q ss_pred eEEEEEecCchHHHHHHHH------cCCcEEEEccCCchHHHHHHHcCCeEEEeC
Q psy2376 832 YEIGWCTGAAQNLLTDAIN------EGVTAYISGEISESTVYISRESGVAYFAAG 880 (896)
Q Consensus 832 ~rvai~~Gsg~~~i~~a~~------~g~D~~ITGd~~~h~~~~a~~~g~~li~~g 880 (896)
..|.+.+|||...++.+.. ..++++++|...||-+..|+..|+ +..+.
T Consensus 56 ~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~ 109 (349)
T TIGR01364 56 YEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVA 109 (349)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEe
Confidence 3788899999877766633 246788999999999888888887 44443
Done!