RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2376
(896 letters)
>gnl|CDD|234597 PRK00050, PRK00050, 16S rRNA m(4)C1402 methyltranserfase;
Provisional.
Length = 296
Score = 352 bits (907), Expect = e-115
Identities = 118/253 (46%), Positives = 169/253 (66%), Gaps = 6/253 (2%)
Query: 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-- 449
L+E ++ L I + +GIY+D TFG GGHS ILERLG KGRLIAID+D ++++
Sbjct: 8 LDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64
Query: 450 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 509
RF+++H F+ L +L + + K+DGIL DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 65 KPFGRFTLVHGNFSNLKEVLAE-GLGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMR 123
Query: 510 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEII 569
MD ++G++A++ + +E + ++ ++YGEERFA++IA+ IV R PIT T +L EII
Sbjct: 124 MDQSQGLTAAEVVNTYSEEELARIFKEYGEERFARRIARAIVEARPKKPITTTGELAEII 183
Query: 570 LKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDR 629
++ ++ +PATRTFQA+RI +N EL+ L AL+ L GR+ VISFHSLEDR
Sbjct: 184 KSAVPPRRKGIHPATRTFQALRIEVNDELEELERALEAALDLLKPGGRLAVISFHSLEDR 243
Query: 630 IVKNFINFNTKIP 642
IVK F +K
Sbjct: 244 IVKRFFRELSKGC 256
>gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane].
Length = 314
Score = 344 bits (885), Expect = e-111
Identities = 130/281 (46%), Positives = 178/281 (63%), Gaps = 10/281 (3%)
Query: 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT 451
LNE + L + +GIYID T G GGHS ILE+L GRLI ID+D +++++ +
Sbjct: 12 LNEVVELLAP---KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68
Query: 452 ---DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 508
D R +++H F L LK+ I K+DGIL DLG+SS Q+++ RGFSF DGPLDM
Sbjct: 69 KEFDGRVTLVHGNFANLAEALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDM 128
Query: 509 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 568
RMD T+G+SA++ + +E ++ ++ ++YGEERFAK+IA+ IV R PI TK+L EI
Sbjct: 129 RMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRIARAIVERRKKKPIETTKELAEI 188
Query: 569 ILKSIRGNKRYK--NPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSL 626
I +I ++ K +PATRTFQAIRIY+N EL+ L AL+ L GR+ VISFHSL
Sbjct: 189 IKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAALDLLKPGGRLAVISFHSL 248
Query: 627 EDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARCKP 667
EDRIVKNF +K + LP+ K K + + KP
Sbjct: 249 EDRIVKNFFKELSKPGV-PKGLPVTEEGPALKFKLITK-KP 287
>gnl|CDD|216706 pfam01795, Methyltransf_5, MraW methylase family. Members of this
family are probably SAM dependent methyltransferases
based on Escherichia coli rsmH. This family appears to
be related to pfam01596.
Length = 310
Score = 315 bits (809), Expect = e-100
Identities = 129/281 (45%), Positives = 181/281 (64%), Gaps = 9/281 (3%)
Query: 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSL-GNKI 450
L E + LNI+ +GIYID T G GGHS ILE+L ++GRLI ID+D ++++ ++
Sbjct: 9 LQEVVELLNIKP---DGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERL 65
Query: 451 T--DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 508
R ++IH+ F L LK+ + K+DGILFDLG+SS Q++ RGFSF D PLDM
Sbjct: 66 KPFKGRVTLIHSNFANLFAYLKELGVGKVDGILFDLGVSSPQLDGAERGFSFKHDAPLDM 125
Query: 509 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 568
RMD + G++A++ L +E ++ ++ + YGEERF+K+IA+ IV R PI TK+L EI
Sbjct: 126 RMDQSAGLTAAEVLNTYSEEDLARIFKKYGEERFSKRIARAIVERRKKKPIETTKELAEI 185
Query: 569 ILKSIRGNKRYK--NPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSL 626
I K++ + K +PATRTFQAIRIY+N EL++L AL+ L GR+ VISFHSL
Sbjct: 186 IKKAVPAKAKRKKIHPATRTFQAIRIYVNDELESLKEALEQAPDLLAPGGRLSVISFHSL 245
Query: 627 EDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARCKP 667
EDRIVKNF +K + LP+ EP +K + + KP
Sbjct: 246 EDRIVKNFFREYSKGCQVPAGLPVILEGLEPLLKIITK-KP 285
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug
and toxic compound extrusion (MATE)-like proteins.
Escherichia coli MurJ (MviN) has been identified as
essential for murein biosynthesis. It has been suggested
that MurJ functions as the peptidoglycan lipid II
flippase which is involved in translocation of
lipid-anchored peptidoglycan precursors across the
cytoplasmic membrane, though results obtained in
Bacillus subtilis seem to indicate that its MurJ
homologs are not essential for growth. Some MviN family
members (e.g. in Mycobacterium tuberculosis) possess an
extended C-terminal region that contains an
intracellular pseudo-kinase domain and an extracellular
domain resembling carbohydrate-binding proteins.
Proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are often
responsible for multidrug resistance (MDR).
Length = 420
Score = 287 bits (737), Expect = 2e-88
Identities = 118/303 (38%), Positives = 172/303 (56%), Gaps = 31/303 (10%)
Query: 11 SSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTE 70
+ TL SRI G R++L A FGA DAF +AFRIPNLLRRLFAEGA S AFVP+ +E
Sbjct: 1 AIGTLLSRILGFVRDVLIAAAFGAGPLADAFFVAFRIPNLLRRLFAEGALSAAFVPVFSE 60
Query: 71 YKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSL 130
Y K G ++ V T+L+ + + + GI+ AP++V L+A GF + F + V+L
Sbjct: 61 YLEKEGEEEARRFASRVLTLLLLVLLLLTLLGILFAPLLVKLLAPGFSGDK--FELAVAL 118
Query: 131 TRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISC------------------- 171
TRIMFPY+ F++ L ILN +F PA P+LLN+
Sbjct: 119 TRIMFPYLLFISLSALLGGILNAHGRFFAPALAPVLLNLVIIAGLLLLAPLFDLGIYALA 178
Query: 172 ------GALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQIS 225
G LQ+++Q+P+L ++G +L+ F++ VRR+LK M P++ V +QI+
Sbjct: 179 WGVLLGGVLQLLVQLPALRRLGFRFRPRLD----FRDPGVRRVLKLMLPALLGVSVSQIN 234
Query: 226 LMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAI 285
L+++T +AS + EGS+S L YADRL + P + GV T LLP LS+ + +E+
Sbjct: 235 LLVDTILASFLPEGSISALYYADRLYQLPLGIFGVAIATALLPRLSRLAAAGDLDEFRRT 294
Query: 286 LDW 288
L
Sbjct: 295 LSR 297
Score = 33.6 bits (78), Expect = 0.53
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 289 IPIFAHSGLALSIGLGACLHASFLYWYLRHK 319
I H GLAL+ L A ++A L LR +
Sbjct: 390 IKPLGHVGLALATSLSAWVNALLLLVLLRRR 420
>gnl|CDD|232778 TIGR00006, TIGR00006, 16S rRNA
(cytosine(1402)-N(4))-methyltransferase. This model
describes RsmH, a 16S rRNA methyltransferase.
Previously, this gene was designated MraW, known to be
essential in E. coli and widely conserved in bacteria
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 307
Score = 283 bits (725), Expect = 2e-88
Identities = 131/279 (46%), Positives = 184/279 (65%), Gaps = 8/279 (2%)
Query: 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI- 450
L+E + LNI + +GIYID T G+GGHS IL +LG+ GRLI ID+D ++++ +I
Sbjct: 9 LDEVVEGLNI---KPDGIYIDGTLGRGGHSKAILSQLGE-GRLIGIDRDPQAIAFAKEIL 64
Query: 451 TDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRM 510
+D RF IIH+ F LK+ + KIDGIL DLG+SS Q+++ RGFSF+ DGPLDMRM
Sbjct: 65 SDLRFVIIHDNFANFFEYLKELLVTKIDGILVDLGVSSPQLDDPERGFSFMHDGPLDMRM 124
Query: 511 DITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEIIL 570
D ++ +SA++ L +E +++ +++ YGEERF+K+IA+ IV R PI TK+L E+I
Sbjct: 125 DQSQKLSAAEILNTYSEEDLEWILKKYGEERFSKRIARAIVERRKKKPIQTTKELAEVIS 184
Query: 571 KSIRGNKRYK--NPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 628
K++ G +YK +PATR FQAIRIY+N EL+ L AL+ L GR+ +ISFHSLED
Sbjct: 185 KAVPGFSKYKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLSIISFHSLED 244
Query: 629 RIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLARCKP 667
RIVKNF +K P + LP+ K + + KP
Sbjct: 245 RIVKNFFRELSKGPQVPPGLPVKEEQLYALGKRITK-KP 282
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence
factor [General function prediction only].
Length = 518
Score = 283 bits (727), Expect = 7e-86
Identities = 129/314 (41%), Positives = 184/314 (58%), Gaps = 32/314 (10%)
Query: 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAF 60
MSL K+ I +SS TL SRI G R++L A FGA DAF +AF++PNLLRRLFAEGAF
Sbjct: 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAF 66
Query: 61 SQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIV-YLVATGFID 119
S AFVP+L E K K G A + V +L + + + GI+ AP +V L+A GF +
Sbjct: 67 SSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDE 126
Query: 120 NYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISC-------- 171
K + V LTRI+FPY+ F++ L +ILN ++F IPAF P+LLN+S
Sbjct: 127 TDKF--LAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLG 184
Query: 172 -----------------GALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGP 214
G LQ+++Q+P+L K G+ + FK+ ++R LK M P
Sbjct: 185 PYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG----FKDPGLKRFLKLMLP 240
Query: 215 SVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKAR 274
++ V +QI+L+++T IAS + EGS+S L YADRL + P + GV +T+LLP+LS+
Sbjct: 241 ALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA 300
Query: 275 IENNTEEYSAILDW 288
+ E+ +LDW
Sbjct: 301 ANGDWPEFLKLLDW 314
Score = 63.5 bits (155), Expect = 3e-10
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 289 IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFI-RLVIALLLLVIVAL 347
IP H GLAL+ L A ++A LY+ LR + +Y+P GWG+F I +L++A ++ L
Sbjct: 407 IPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFLILKLLLASAIMAAALL 466
Query: 348 WGNSYFNWLGMQAHPIFRIVALLLIL-LFCGITYFLALRIMGFLFLNEAI 396
+ + + +LL+L L YF L ++GF A
Sbjct: 467 ALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGFRVRGFAR 516
>gnl|CDD|182741 PRK10799, PRK10799, metal-binding protein; Provisional.
Length = 247
Score = 239 bits (611), Expect = 8e-73
Identities = 103/220 (46%), Positives = 139/220 (63%), Gaps = 13/220 (5%)
Query: 670 KLNIKKYEDYCPNGLQVEGRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGEN 729
KLN DY PNGLQVEGR + IVTGVTAS L+ AV + ADA++VHHGYFWKGE+
Sbjct: 13 KLNSAAISDYAPNGLQVEGRETVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGES 72
Query: 730 SNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWI 789
I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA +L I +
Sbjct: 73 PVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALL-----------GITVM 121
Query: 790 GKIINLKRYN-FKKIITIKDLFHHITRKIGKKPIVIGDLN-KKIYEIGWCTGAAQNLLTD 847
G+I L + + +L I ++G+KP+ GD + + + WCTG Q+ +
Sbjct: 122 GEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDS 181
Query: 848 AINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
A GV A+I+GE+SE T++ +RE G+ ++AAGHHATER
Sbjct: 182 AARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG 221
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN. This model
represents MviN, a family of integral membrane proteins
predicted to have ten or more transmembrane regions.
Although frequently listed as a virulence protein, it is
not restricted to pathogens and it is an essential
protein in Sinorhizobium meliloti. In a number of
species its gene is adjacent to that of the
uridylyltransferase GlnD , the signal-transducing enzyme
that performs the key modification to the nitrogen
regulatory protein PII [Unknown function, General].
Length = 502
Score = 227 bits (582), Expect = 2e-65
Identities = 118/312 (37%), Positives = 170/312 (54%), Gaps = 32/312 (10%)
Query: 2 SLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFS 61
SL K+ + +S TLFSRITG R+ + A FGA + DAFN+AF IPN RRLFAEGAF+
Sbjct: 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFN 60
Query: 62 QAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNY 121
AFVP+ T+ K K A + + V T+LI + + + GI AP ++ L+A GF D
Sbjct: 61 SAFVPVFTKAKKK-EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADET 119
Query: 122 KIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISC---------- 171
+ VSLTRIMFPY+ ++ + ILN +F IP+F+PIL NI
Sbjct: 120 RSL--AVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFFDWN 177
Query: 172 ---------------GALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSV 216
G Q++IQ+P L K G + N ++R LK P+
Sbjct: 178 YGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDP----GLKRFLKLFLPTT 233
Query: 217 FSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIE 276
A+QI+L++NT +AS + GS+S L YA+R+ + P + G++ +T+LLP LS+ E
Sbjct: 234 LGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293
Query: 277 NNTEEYSAILDW 288
N E +L+
Sbjct: 294 GNWNELRDLLNQ 305
Score = 62.7 bits (153), Expect = 5e-10
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 289 IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALW 348
I G+AL+ + + + LY L + I G +LVIA ++ V
Sbjct: 398 IFPLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYL 457
Query: 349 GNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIMGFLFLNEAI 396
S + + + + L+ LL YFL L ++ LN +
Sbjct: 458 IVSVSLGGVLVKNLLGLLAIGLIGLLV----YFLGLALLKIEELNLLL 501
>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence
gene in Salmonella enterica serovar. Typhimurium greatly
reduces virulence in a mouse model of typhoid-like
disease. Open reading frames encoding homologues of MviN
have since been identified in a variety of bacteria,
including pathogens and non-pathogens and
plant-symbionts. In the nitrogen-fixing symbiont
Rhizobium tropici, mviN is required for motility. The
MviM protein is predicted to be membrane-associated.
Length = 452
Score = 203 bits (519), Expect = 2e-57
Identities = 112/315 (35%), Positives = 174/315 (55%), Gaps = 42/315 (13%)
Query: 28 FARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHV 87
A FGA DAFN+AFRIPNLLRRLFAEGAFS AFVP+ E K + + + V
Sbjct: 1 IAAYFGAGPLADAFNVAFRIPNLLRRLFAEGAFSSAFVPVFAELKQADKD-EAAEFVRRV 59
Query: 88 ATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLA 147
+T+LI + + + GI+ AP ++ L+A GF + + F++TVSL RI FPY+ ++ +
Sbjct: 60 STLLIGVLLLVTLLGILAAPWVIRLLAPGF--DAETFSLTVSLLRITFPYLLLVSLSAVF 117
Query: 148 SSILNIWSQFKIPAFTPILLNISC--------------------------GALQIIIQIP 181
++LN +F PAF+P+LLNI G LQ+++Q+P
Sbjct: 118 GAVLNARKKFFAPAFSPVLLNIGVILTLLFLANYFGREPIYGLAIGVLIGGVLQLLVQLP 177
Query: 182 SLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSL 241
L K G+ + N F++ V+R L P++ V +Q++L+++T +AS + EGS+
Sbjct: 178 FLRKAGLLLKPRFN----FRDKGVKRFLALALPTLLGVSVSQLNLLIDTALASFLAEGSI 233
Query: 242 SCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDWIPIFAHSGLALSI 301
S L YADR+ + P + GV+ +T+LLP LS+ + + +E+ +LD A+ +
Sbjct: 234 SYLYYADRIYQLPLGIFGVSVSTVLLPRLSRHAKDGDWDEFLDLLDQ---------AIRL 284
Query: 302 GLGACLHASFLYWYL 316
L + ASF L
Sbjct: 285 TLLLMIPASFGLLVL 299
Score = 50.0 bits (120), Expect = 4e-06
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 289 IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALW 348
+P GLAL+ L A ++ FLY+ LR + GW F LV+ L+ V L
Sbjct: 373 LPPLGVVGLALATSLSAWINLVFLYYILRKRLGGHSLRGWKTFLASLVVPTALMGGVILL 432
Query: 349 GNSYFNWLGMQAHPIFRIVALLLILLF 375
+S ++ + +LLLIL+
Sbjct: 433 LSSLT-------QGLWVVGSLLLILVG 452
>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function
unknown].
Length = 250
Score = 194 bits (494), Expect = 2e-56
Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 12/222 (5%)
Query: 669 KKLNIKKYEDYCPNGLQVEG-RSNINVIVTGVTASLDLIKTAVDMNADAILVHHG-YFWK 726
+ L + ED+ NGLQV G + + + A+L ++ A+++ AD ++VHH FW
Sbjct: 12 EFLPPELAEDWDNNGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWP 71
Query: 727 GENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNI 786
++ I G K KR++ LI N INLYA H LD HP+ GN+A A +L F +
Sbjct: 72 VKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGGNDALAAALLGAEELPPF-GEGL 130
Query: 787 GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCTGAAQNLL 845
G +G K+ T+++L I K+G+ P+ V+ D +++I + C+G+ Q L
Sbjct: 131 GRVG--------ELKEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFL 182
Query: 846 TDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
++A EGV AYI+G++S T + +RE G++ AGH+ATER
Sbjct: 183 SEAAAEGVDAYITGDLSHHTAHDARELGLSVIDAGHYATERP 224
>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388
family. The characterization of this family of
uncharacterized proteins as orthologous is tentative.
Members are found in all three domains of life. Several
members (from Bacillus subtilis, Listeria monocytogenes,
and Mycobacterium tuberculosis - all classified as
Firmicutes within the Eubacteria) share a long insert
relative to other members [Unknown function, General].
Length = 249
Score = 182 bits (465), Expect = 2e-52
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 11/221 (4%)
Query: 669 KKLNIKKYEDYCPNGLQVE-GRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKG 727
+ L + ED NGLQV G + +V V AS + AV + AD I+ HH WK
Sbjct: 12 RFLPKELAEDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKP 71
Query: 728 ENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIG 787
I GIK RL+ L+ N I+LY+ H LD H GNN LA+ L + F +G
Sbjct: 72 LKRLIRGIKPGRLKILLQNDISLYSAHTNLDAHD-GGNNDALARALGLENPKEFEDYGLG 130
Query: 788 WIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNK-KIYEIGWCTGAAQNLLT 846
+G+ FK I + I + + KP+++ + ++ +G+ + +
Sbjct: 131 RVGE--------FKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIM 182
Query: 847 DAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
A+ EGV AYI+G++S T +++RE G+ AGH+ATER
Sbjct: 183 KALREGVDAYITGDLSHHTAHLARELGLNVIDAGHYATERG 223
>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family
contains several NIF3 (NGG1p interacting factor 3)
protein homologues. NIF3 interacts with the yeast
transcriptional coactivator NGG1p which is part of the
ADA complex, the exact function of this interaction is
unknown.
Length = 237
Score = 181 bits (461), Expect = 6e-52
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 669 KKLNIKKYEDYCPNGLQVEGRSN-INVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKG 727
+ ED+ GLQV + I+ + A+ ++I+ A++ AD I+ HH +K
Sbjct: 8 ELAPPSLAEDWDNVGLQVGDPEGEVKKILVALDATEEVIEEAIENGADLIITHHPLIFKP 67
Query: 728 ENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKN-- 784
K +R+ +LI N I+LY+ H LD P G N LA++L +
Sbjct: 68 LKRITGDDPKGRRILKLIKNNISLYSAHTNLDAAPG-GVNDWLAELLGLESIEPLEPSVS 126
Query: 785 ---NIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCTGA 840
+G IG++ + I++++L + ++G + + V+GDL+K I ++ C G+
Sbjct: 127 EGEGLGRIGEL--------PEPISLEELAKRVKERLGLEGVRVVGDLDKPIKKVAICGGS 178
Query: 841 AQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
+L+ +A +G I+GE+ ++E G+A AGH+ATER+
Sbjct: 179 GGSLIEEAKAKGADLLITGELKHHDALDAKEKGIALIDAGHYATERF 225
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 42.0 bits (99), Expect = 0.001
Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 36/305 (11%)
Query: 1 MSLHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAF 60
L K + + TL S + GL L AR+ G + + +A I L A+
Sbjct: 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGF-GLYALALAIIGLFSI-LADFGL 63
Query: 61 SQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDN 120
A + EY+ K + + +L + + +++ +++ +
Sbjct: 64 PAAITREIAEYREKGEYL--------LLILLSVLLLLLLALILLLLLLLIAYLLAPIDPV 115
Query: 121 YKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISCGALQIIIQI 180
+ L RI+ + + ++ + + +F A + + A+ ++
Sbjct: 116 LAL------LLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLFA 169
Query: 181 PS------------------LIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAA 222
LI +G P F ++ +L+ P + S
Sbjct: 170 ALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLN 229
Query: 223 QISLMLNTNIASQMR-EGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEE 281
+ ++T + + S A RL+ + N +L P LS+A E + +
Sbjct: 230 FLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVAS-ALNRVLFPALSRAYAEGDRKA 288
Query: 282 YSAIL 286
+L
Sbjct: 289 LKKLL 293
Score = 34.0 bits (78), Expect = 0.37
Identities = 29/192 (15%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 5 KTFITISSITLFSRITGLFRE----ILFARVFGAS---IYTDAFNIAFRIPNLLRRLFAE 57
K + L S + +L G + IY+ A + + +
Sbjct: 213 KELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVA------ 266
Query: 58 GAFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGF 117
A ++ P L+ + A KKL+ +L+ + +++AP I+ L+
Sbjct: 267 SALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFG-- 324
Query: 118 IDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISCGALQII 177
+ + + +++ F++ ++L SS+L + ++ L+++ L +I
Sbjct: 325 ----EKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL----LISLISALLNLI 376
Query: 178 IQIPSLIKIGMF 189
+ + + + G+
Sbjct: 377 LNLLLIPRFGLI 388
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family
and similar proteins. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. MATE has also been identified as a large
multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 420
Score = 38.5 bits (90), Expect = 0.014
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 14/146 (9%)
Query: 11 SSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTE 70
S+I GL + FG + A+ +AFRI +L +QA +P++ +
Sbjct: 228 SAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPA--LGLAQAALPVVGQ 285
Query: 71 Y----KNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNI 126
R T + + I +F + + F ++ + +
Sbjct: 286 NLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSL--------FTNDPEFLEL 337
Query: 127 TVSLTRIMFPYVGFMAFITLASSILN 152
VS RI+ Y F+ + +
Sbjct: 338 AVSYLRILAIYYLFVGIGYVLQAGFQ 363
Score = 35.4 bits (82), Expect = 0.12
Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 6/130 (4%)
Query: 40 AFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFIC 99
A +AF + LL L S ++++ ++++ + I +
Sbjct: 32 AVGLAFPLIALLIALGV--GLSVGTSALISQAIGAGDEEKARRVLVQSIVLAILLGLLLA 89
Query: 100 VFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKI 159
+ +P+I+ L ++ + + I+ + + S IL +
Sbjct: 90 ALLLFFSPLILSL----LGAEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRT 145
Query: 160 PAFTPILLNI 169
+L N+
Sbjct: 146 AMIISVLSNL 155
>gnl|CDD|218341 pfam04947, Pox_VLTF3, Poxvirus Late Transcription Factor VLTF3
like. Members of this family are approximately 26 KDa,
and are involved in trans-activator of late
transcription.
Length = 171
Score = 36.1 bits (84), Expect = 0.027
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 544 KKIAKEIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSI 603
KK+ K + +T V LK + +K Y N F + + + NLS
Sbjct: 42 KKLKKYNIDTDDVT-----TTKVLDFLKKLGYSKYYDN----VFLILNMLTGKPPPNLSS 92
Query: 604 ALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFLA 663
L+ +++ + + F L R KNFI+++ + + L + Y L
Sbjct: 93 ELE---ERIKEIFKELQKFFDKLNTR--KNFISYSY---VLYKLLELLGYDENLPDFPLL 144
Query: 664 RCKPKKKLNIKKYEDYC 680
+ K + ++ C
Sbjct: 145 KSLTKLNSQDEIWKKLC 161
>gnl|CDD|240532 cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides and participate in the biosynthesis
of cell wall components such as teichuronic acid. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 406
Score = 37.1 bits (87), Expect = 0.039
Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 48/254 (18%)
Query: 54 LFAEGAFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLV 113
LF++ S A + + T++ + V + + + + ++AP+I
Sbjct: 50 LFSDLGLSSALI---------QRKDLTEEDLSTVFWLNLLLGLLLYLLLFLLAPLIA--- 97
Query: 114 ATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISCGA 173
F + + L R++ ++ ++L +FK A ++ + G
Sbjct: 98 --AFYNE----PELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGV 151
Query: 174 LQI------------IIQ--IPSLIK-IGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFS 218
+ I + Q + +L+ + ++ + P F +++ +L F
Sbjct: 152 VAIVLALLGFGVWALVAQQLVGALVSTVLLWILSRWRPRLSFSLASLKELLS------FG 205
Query: 219 --VFAAQISLMLNTN-----IASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLS 271
+ + + + N I + +L S A RL P + +L P LS
Sbjct: 206 SKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYYSRAYRLALLPVQNITGPITRVLFPALS 265
Query: 272 KARIENNTEEYSAI 285
R++++ E
Sbjct: 266 --RLQDDPERLRRA 277
Score = 30.5 bits (70), Expect = 3.8
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 26 ILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQAFVPILTEYKNKRGNI--ATKKL 83
++ + GA+ ++ A+R+ L + G ++ P L+ ++ + A K
Sbjct: 224 LIIGKFLGAA-ALGYYSRAYRLALLPVQNIT-GPITRVLFPALSRLQDDPERLRRAYLKA 281
Query: 84 IDHVATVLIWFMFFICVFGIIMAPIIVYLV 113
+ +A + M + ++A +V L+
Sbjct: 282 LRLLALITFPLMVGL----ALLAEPLVLLL 307
>gnl|CDD|225795 COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion
transport and metabolism].
Length = 717
Score = 34.7 bits (80), Expect = 0.22
Identities = 33/142 (23%), Positives = 43/142 (30%), Gaps = 14/142 (9%)
Query: 260 VTFNTILLPNLSKARIENNTEEYSAILDWIPIFAHSGLALSIGLGACLHASFLYWYLRHK 319
+ LLP L + E S L F G LG +W+
Sbjct: 315 LAAGLYLLPELGGPK---FQELGSPKLLIALFFVVVGSLAGAWLGYLQLLPAPFWFWFGH 371
Query: 320 RIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGIT 379
+ Y G G +L++ LLV VAL N R L+ ILL
Sbjct: 372 QGY-EYLGRG-RLWQLLLIKGLLVWVALMFR--ANV-TATKLKG-RKTTLIAILLLSLTG 425
Query: 380 YFLALRIMGFLFLNEAINWLNI 401
L F N W N+
Sbjct: 426 IGL---FFLFGLYNP--EWTNL 442
>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism].
Length = 271
Score = 34.0 bits (78), Expect = 0.27
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 13/114 (11%)
Query: 286 LDWIPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGV----------FFIRL 335
L P+ LA+++ L A FL + W
Sbjct: 5 LWPAPLDFVLALAIALFLLAFGLHLFLLRLYLFPQE-PLRKAWPTRDWLLDLVLLTLSIS 63
Query: 336 VIALLLLVIVALW--GNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIM 387
V+ L+LL+ + LW Y LG+ P+ + LLL LF + Y+ A R++
Sbjct: 64 VVGLVLLLALILWALLGGYLPGLGVAPGPLPFALQLLLAFLFLDLGYYWAHRLL 117
>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 738
Score = 33.9 bits (78), Expect = 0.40
Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 27/109 (24%)
Query: 282 YSAILDWIPIFAHSGLALSIGLGACLHASFLYWYLRHKRI-YIPCA----GWGVFFIRLV 336
Y+ + L GL L A LR +R Y P A G ++ +
Sbjct: 24 YAIEAGLLGPELRVALGALAGLA--LLA--AGERLRRRRYAYFPAALQGGGLATLYLTVF 79
Query: 337 IALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALR 385
A L ++ VA L++L T LAL
Sbjct: 80 AAFHLYGLLPPT------------------VAFALLVLVTAGTVVLALL 110
Score = 32.3 bits (74), Expect = 1.3
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 291 IFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGN 350
+ LAL++ A + Y + G+ + ++ALLLL L G
Sbjct: 526 LLTLLALALALVYLYRRRARWPLVYRAAAYLL-----LGLAPLAALLALLLLENPLLSGI 580
Query: 351 SYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIMGFLFLNEAINWL 399
LG PI + L +LL + R+ + L +
Sbjct: 581 GGAAPLG--FLPILNPLLLAYLLLAPALLALWLRRLATPIRLKALRPAV 627
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Escherichia
coli Wzx and related proteins from other gram-negative
bacteria are thought to act as flippases, assisting in
the membrane translocation of lipopolysaccharides
including those containing O-antigens. Proteins from the
MATE family are involved in exporting metabolites across
the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 402
Score = 33.7 bits (78), Expect = 0.49
Identities = 48/309 (15%), Positives = 102/309 (33%), Gaps = 50/309 (16%)
Query: 3 LHKTFITISSITLFSRITGLFREILFARVFGASIYTDAFNIAFRIPNLLRRLFAEGAFSQ 62
+ + S++ G + AR G + ++A L +FA+
Sbjct: 2 AKNSGWLFVG-NIISKLLGFLVRVYLARYLGPEGF-GILSLALAFVGLFS-IFADLGLPT 58
Query: 63 AFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYK 122
A V + Y+ ++ ++ + + GI+ ++ + I Y
Sbjct: 59 ALVREIARYRKEKIR-----------EIISTSLVLKLILGILALLLL--FLFAFLIAFYD 105
Query: 123 IFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISCGALQII----- 177
V L I+ + F A +L I + + K I+ ++ L +I
Sbjct: 106 --PELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLG 163
Query: 178 ---------------IQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAA 222
+ L+ I I L F + +L+ P + +
Sbjct: 164 GGLIGFALAYLIASVLSAILLLYI-YRKKILLPKFFSFDLKLAKELLRFSIP----LALS 218
Query: 223 QISLMLNTNIASQM-----REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIEN 277
I ++ T I + M + ++ + A R+ E + +T L P +S+ +N
Sbjct: 219 GIFSLIYTRIDTIMLGYFLGDAAVGIYNAAYRIAELLLFIPSA-ISTALFPRISELY-KN 276
Query: 278 NTEEYSAIL 286
+ +E +L
Sbjct: 277 DKDELKKLL 285
>gnl|CDD|218473 pfam05159, Capsule_synth, Capsule polysaccharide biosynthesis
protein. This family includes export proteins involved
in capsule polysaccharide biosynthesis, such as KpsS and
LipB.
Length = 268
Score = 32.7 bits (75), Expect = 0.65
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 694 VIVTGVTASLDLIKTAVDMNADA--ILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLY 751
V+V G I A I + G+ S +G L+++KI +Y
Sbjct: 3 VVVWGDKRPYHRIAAAAAKKKGIPVIRLEDGFL----RSLGLGSNGYPPYSLVLDKIGIY 58
Query: 752 AY-HLPLDM-----HPKLGNNAQLA---KILNFSCTRRFSKNNIGWIGKIINLKRYNFKK 802
LP D+ + + A LA ++N T + SK N+ L KK
Sbjct: 59 YDSSLPSDLEQLLSEKSVLDQAGLARAEYLMNRIVTHKLSKYNLRRAAPAFRLLLAKDKK 118
Query: 803 IITI 806
I+ +
Sbjct: 119 IVLV 122
>gnl|CDD|148050 pfam06212, GRIM-19, GRIM-19 protein. This family consists of
several eukaryotic gene associated with
retinoic-interferon-induced mortality 19 (GRIM-19)
proteins. GRIM-19, was reported to encode a small
protein primarily distributed in the nucleus and was
able to promote cell death induced by IFN-# and RA. A
bovine homologue of GRIM-19 was co-purified with
mitochondrial NADH:ubiquinone oxidoreductase (complex I)
in bovine heart. Therefore, its exact cellular
localisation and function are unclear. It has now been
discovered that GRIM-19 is a specific interacting
protein which negatively regulates Stat3 activity.
Length = 130
Score = 31.2 bits (71), Expect = 0.78
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 196 PSHGFKNIAVRRILKKMGPSVFSVFAAQISLML 228
P G+ I +R L K G S +++FA
Sbjct: 11 PPGGYGPIPFKRNLPKTGFSGYAMFATGAGATA 43
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 32.4 bits (74), Expect = 1.1
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 28/125 (22%)
Query: 284 AILDWIPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLV 343
W+ L L++ GA +F P W + LL LV
Sbjct: 5 LARQWVLGRPARRLLLALVFGALFALAF------------PPPDWWWLAWFSLAPLLWLV 52
Query: 344 IVA------------LWGNSYF----NWLGMQAHPIFRIVALLLILLFCGITYFLALRIM 387
A L+G +F WLG ++A+ L LL + +LAL ++
Sbjct: 53 RGAPTSWEGLAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLL 112
Query: 388 GFLFL 392
L
Sbjct: 113 LVAVL 117
>gnl|CDD|185281 PRK15383, PRK15383, type III secretion system protein; Provisional.
Length = 335
Score = 31.9 bits (72), Expect = 1.3
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 391 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 450
+LN IN IE ERI GI++D F +G K L +L + R I + +++ L +
Sbjct: 75 YLNNIINAAIIEKERIIGIFVDGDFSKGQR--KALGKLEQNYRNIKVIYNSD---LNYSM 129
Query: 451 TDSRFSIIH 459
D + + I+
Sbjct: 130 YDKKLTTIY 138
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 31.8 bits (73), Expect = 1.9
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 331 FFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLA 383
RL+IA LL + + L S LG P + +L + G ++
Sbjct: 87 LLRRLIIAGLLTLPLLLL--SLGLLLGAFLLPWVSFLLATPVLFYGGWPFYRG 137
>gnl|CDD|179400 PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional.
Length = 137
Score = 29.9 bits (68), Expect = 2.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 693 NVIVTGVTASL-DLIKTAVDMNADAILV 719
VI GV S + I A++ +ADAILV
Sbjct: 33 EVINLGVMTSQEEFIDAAIETDADAILV 60
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase;
Provisional.
Length = 828
Score = 31.2 bits (71), Expect = 3.0
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 388 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTE 442
GF L AI W++ ER + + +D + L +I
Sbjct: 726 GFSTLAAAIAWISKGPERFDLVLVDDRLLDEEQAAAALHAAAPTLPIILGGNSKT 780
>gnl|CDD|220473 pfam09925, DUF2157, Predicted membrane protein (DUF2157). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 144
Score = 29.9 bits (68), Expect = 3.0
Identities = 27/107 (25%), Positives = 35/107 (32%), Gaps = 22/107 (20%)
Query: 273 ARIENNTEEYSAILDWIPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVF- 331
I E A + I G AL +G G F+ W
Sbjct: 16 EAILARYGEDPARSSLVRILLWLG-ALLLGAGV---IFFVAAN------------WEEIP 59
Query: 332 -FIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCG 377
F++ + L LLV +AL G WL + P LLL L G
Sbjct: 60 RFVKFGLLLALLVGLALGGF----WLWRRGKPRLGEALLLLGALLFG 102
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known
as Stage III sporulation protein F, and related
proteins. The integral membrane protein SpoVB has been
implicated in the biosynthesis of the peptidoglycan
component of the spore cortex in Bacillus subtilis. This
model represents a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Proteins from
the MATE family are involved in exporting metabolites
across the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 434
Score = 30.9 bits (71), Expect = 3.1
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
Query: 59 AFSQAFVPILTEYKNKRGNIATKKLIDHVATVLIWFMFFICV-FGIIMAPIIVYLVATGF 117
A S + VP ++E K ++ I+ + + V ++ PI L
Sbjct: 289 ALSTSLVPAISEAYAKGDKKELRRRINQALRLTLLIGLPAAVGLAVLAEPINTLL----- 343
Query: 118 IDNYKIFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKIPAFTPILLNISCGALQII 177
+ + L +I+ P + F++ + ++IL + KIP + ++I+
Sbjct: 344 ---FGDSEGGLIL-QILAPSILFLSLQQVTAAILQGLGKVKIPVIN----LLIGLLVKIV 395
Query: 178 IQIPSLIKIGM 188
+ + G+
Sbjct: 396 LNYVLIPIFGI 406
>gnl|CDD|237913 PRK15119, PRK15119, undecaprenyl-phosphate
alpha-N-acetylglucosaminyl 1-phosphate transferase;
Provisional.
Length = 365
Score = 30.8 bits (70), Expect = 3.6
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 294 HSGL-----ALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFF------------IRLV 336
H GL +S+ G C +Y+ H +Y+ CAG VF IR
Sbjct: 43 HQGLIPLVGGISVYAGICFTFGITDYYIPHASLYLACAGVLVFVGALDDRFDISVKIRAT 102
Query: 337 IALLLLVIVALWGNSYFNWLG 357
I + +++ ++ Y + LG
Sbjct: 103 IQAAVGIVMMVFAGLYLSSLG 123
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 30.7 bits (70), Expect = 4.2
Identities = 41/349 (11%), Positives = 94/349 (26%), Gaps = 59/349 (16%)
Query: 81 KKLIDHVATVLIWFMFFICVFGIIMA-----PIIVYLVATGFIDNYKIFNITVSLTRIMF 135
+K V + + + I+ P++ L A ++ + RI+
Sbjct: 89 RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPA-----EVLELAAEYLRIIL 143
Query: 136 PYVGFMAFITLASSILNIWSQFKIPAFTPILLNISCGAL--------------------- 174
F + S IL K P + +L N+ L
Sbjct: 144 LGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALAT 203
Query: 175 ------------QIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAA 222
+++ L+ + +K + ++ IL+ P +
Sbjct: 204 VIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRK------LLKEILRLGLPIFLESLSE 257
Query: 223 QISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEY 282
+ +L T +++ +L+ A R+ F + + + + N +
Sbjct: 258 SLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAGNYKRA 316
Query: 283 SAILDWIPIFAHSGLALSIGLGACLHASFL-YWYLRHKRIYIPCAGWGVFFIRLVIALLL 341
+ + +AL I L L + + + V + +
Sbjct: 317 RRAA-RLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIA----LAVILLLIAALFQP 371
Query: 342 LVIVALWGNSYFNWLGMQAHPIF-RIVALLLILLFCGITYFLALRIMGF 389
+ + G P +++ L Y L +G
Sbjct: 372 FDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA--YLLGFFFLGL 418
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 30.1 bits (68), Expect = 4.7
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 458 IHNCFTELDIILKKYNIKKIDGILFDLG 485
IH C +L +L+K D ++F LG
Sbjct: 6 IHGCLDDLLRLLEKIGFPPNDKLIF-LG 32
>gnl|CDD|219117 pfam06638, Strabismus, Strabismus protein. This family consists of
several strabismus (STB) or Van Gogh-like (VANGL)
proteins 1 and 2. The exact function of this family is
unknown. It is thought, however that STB1 gene and STB2
may be potent tumour suppressor gene candidates.
Length = 507
Score = 30.5 bits (69), Expect = 5.0
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 291 IFAHSGLALSIGLGACLHA-SF-----LYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVI 344
+ L +GL A + +F + W R + C G I L LL+L+I
Sbjct: 92 RYLGLALGGLLGLLAFVTPLAFIVLPQVGWRDRLEPCGTACEG---LLISLAFKLLILLI 148
Query: 345 VALWGNSYFNWLGMQAHP---IFRIVALLLILLFCGITY--FLALRIMG 388
A W + F P +FR + L+L+ LF +Y F +RI+G
Sbjct: 149 -ASW--ALFLRPPRADMPRIFVFRALLLVLVFLFL-FSYWLFYGVRILG 193
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 30.2 bits (69), Expect = 5.0
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 332 FIRLVIALLLLVIVALWGNSYFNWLGMQAHPI------FRIVALLLILLFCGITYFLALR 385
L++ L+ +++ +G +G+ + RIV L L +T LR
Sbjct: 87 LFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALGSTYLRIVGGSLFLQALSLTLSAILR 146
Query: 386 IMGF----LFLNEAINWLNI 401
G ++++ +N LNI
Sbjct: 147 SHGRTKIPMYVSLIMNILNI 166
>gnl|CDD|172166 PRK13603, PRK13603, fumarate reductase subunit C; Provisional.
Length = 126
Score = 28.9 bits (64), Expect = 5.4
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 313 YW------YLRHKRIYIPC--AGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHP-- 362
YW YLR I C W V ++ +L+L V GNSY +L A+P
Sbjct: 11 YWWARRRSYLRFMLREISCIFVAWFVLYL-----VLVLRAVGAGGNSYQRFLDFSANPVV 65
Query: 363 -IFRIVALLLILLFCGITYF 381
+ +VAL +LL +T+F
Sbjct: 66 VVLNVVALSFLLLH-AVTWF 84
>gnl|CDD|224880 COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy
production and conversion].
Length = 227
Score = 29.7 bits (67), Expect = 5.8
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 17/80 (21%)
Query: 319 KRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSY--------------FNWLG---MQAH 361
K + P A FF L+I ++L AL+G Y F W G H
Sbjct: 124 KGGHNPIAQVAYFFYFLMIVFMILTGFALYGEHYHYGLGAPLRYVFEWFEWTGGGSADVH 183
Query: 362 PIFRIVALLLILLFCGITYF 381
R+ L+I Y
Sbjct: 184 FWHRLGMWLIIAFVIVHVYM 203
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 30.1 bits (68), Expect = 5.9
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 91 LIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSI 150
+++ MF + G +MA + +A ++ + ++ V+L + MA +T A SI
Sbjct: 211 VMYTMFVMVAAGGLMATAQLGPIA----KDFGVADVPVTLLGLT------MAALTFALSI 260
Query: 151 LNIWSQFKIPAF 162
I + F P F
Sbjct: 261 DRILNGFTRPFF 272
>gnl|CDD|190033 pfam01554, MatE, MatE. The MatE domain.
Length = 161
Score = 29.1 bits (66), Expect = 6.0
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 81 KKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGF 140
K + I + ++ + + + F + ++ + RI+ + F
Sbjct: 65 FKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIPF 124
Query: 141 MAFITLASSILNIWSQFKIPAFTPILLNISCGALQIII 178
++ + S L K P + +N+ L I +
Sbjct: 125 LSLQFVLSGFLRGAGDTKPPLY----INLISLLLNIPL 158
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists primarily of archaeal and bacterial
ME. Amino acid DH-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 29.5 bits (67), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 489 NQINNELRGFSFLLDGPLDMRM-DITRG--ISASKWLANATEFNIKKVIQDYGEERFAKK 545
NQ+NN L GF + G LD+R IT ++A++ +A+ E + GEE
Sbjct: 156 NQVNNVL-GFPGIFRGALDVRATKITEEMKLAAAEAIADLAE------EEVLGEEYIIPT 208
Query: 546 IAKEIVHYR 554
V R
Sbjct: 209 PFDPRVVPR 217
>gnl|CDD|217153 pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This
is a family of integral membrane proteins. CtaA is
required for cytochrome aa3 oxidase assembly in Bacillus
subtilis. COX15 is required for cytochrome c oxidase
assembly in yeast.
Length = 301
Score = 29.5 bits (67), Expect = 6.9
Identities = 21/121 (17%), Positives = 29/121 (23%), Gaps = 29/121 (23%)
Query: 293 AHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIV------- 345
AH LA + L L + L + LLLL I
Sbjct: 133 AHLLLAFLL-LALLLWLALRLREPDPAPAPAAGPRRLRGLALLALVLLLLQIALGALVAG 191
Query: 346 --------------------ALWGNSYFNWLGMQ-AHPIFRIVALLLILLFCGITYFLAL 384
W N + N +Q H + + LL+L
Sbjct: 192 LDAGLACNTFPLMGPDFPAEPDWRNFFENPATVQFLHRLGAYLTFLLLLALAVAAARRRR 251
Query: 385 R 385
R
Sbjct: 252 R 252
>gnl|CDD|234462 TIGR04086, TIGR04086_membr, putative membrane protein, TIGR04086
family. Members of this family of strongly hydrophobic
putative transmembrane protein average about 125 amino
acids in length and occur mostly, but not exclusively,
in the Firmicutes. Members are quite diverse in
sequence. The function is unknown.
Length = 115
Score = 28.2 bits (64), Expect = 7.1
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 22/94 (23%)
Query: 327 GWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGIT------- 379
G+ ++ L+LL+I+AL YF L + ++ +L + G
Sbjct: 4 LKGLLVA-YILTLILLLILALL--LYFTDLSEGSLSWLILIIYILSVFIGGFIAGKKAGS 60
Query: 380 ------------YFLALRIMGFLFLNEAINWLNI 401
YFL L ++ LF L
Sbjct: 61 KGWLWGLLVGLLYFLILLLISLLFGPGPGFTLGQ 94
>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase.
Length = 423
Score = 29.9 bits (68), Expect = 7.3
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 298 ALSIGLGAC-LHASFLYWYLRHKRIYIPCAGWG 329
LS G G+ L A FL + IYIP WG
Sbjct: 122 CLS-GTGSLRLGAEFLARFYPGSTIYIPNPTWG 153
>gnl|CDD|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 205 to 258
amino acids in length.
Length = 193
Score = 28.8 bits (65), Expect = 8.6
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 296 GLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLL--LVIVALWGNSYF 353
L L++G GAC +Y+ R R + W + LV+ LLL L+ V L
Sbjct: 117 QLQLALGTGAC-----IYFLNRKGRRFGRALLWSLGG--LVVGLLLGSLLAVLLPPFILP 169
Query: 354 NWLG---MQAHPIFRIVALLLILLF 375
L +Q+ P + + L L LF
Sbjct: 170 GSLSPEQIQSLPAY--LLLWLGSLF 192
>gnl|CDD|206279 pfam14110, DUF4282, Domain of unknown function (DUF4282). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 93 and 155
amino acids in length. There is a single completely
conserved residue E that may be functionally important.
Length = 89
Score = 27.5 bits (62), Expect = 8.9
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 332 FIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIM 387
I+++ L L++I + F L A+ + LL+ + L +R++
Sbjct: 13 IIKVLYWLGLILIGLFGLSGLFGGLATMAYSPGGGLLALLLGPLGFLLGLLLVRVV 68
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella
[Cellular processes, Chemotaxis and motility].
Length = 347
Score = 29.5 bits (67), Expect = 9.1
Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 39/159 (24%)
Query: 74 KRGNIATKKLIDHVATVLIWFMFFICVFGIIMAPIIVYLVATGF-------IDNYK---- 122
+ GN+ + ++ A +L + FG +A ++V L++ ++
Sbjct: 16 EEGNVPKSREVNSAAVLLAGV-LSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGI 74
Query: 123 IFNITVSLTRIMFPYVGFMAFITLASSILNIWSQFKI-PAFTPILLNISCGALQIIIQIP 181
F + ++ P + + + S+I QF P+ S
Sbjct: 75 FFQSIREVLLLLLPIFVLLLVVGVLSNIA----QFGFLFTTKPLKPKFS----------- 119
Query: 182 SLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVF 220
K+NP G K + + L ++ S+ VF
Sbjct: 120 -----------KINPIKGLKRLFSLQSLVELLKSLLKVF 147
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 28.6 bits (64), Expect = 9.4
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 92 IWFMFFICVFGIIMAPIIVYLVATGFIDNYKIFNITVSLTRIMFPYVGFMAFITLASSIL 151
+ F+ ++ ++ I++ + Y + + F + +SL + + F L S L
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSII-LLVLSLFFLLFLSFL 146
>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like. This is a family
of bacterial and plant peptidases in the same family as
MEROPS:M50B.
Length = 201
Score = 28.7 bits (65), Expect = 9.8
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 35/112 (31%)
Query: 294 HSGLALSIG---------------LGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIA 338
SGL +S G LG L L R L +
Sbjct: 52 GSGLTVSRGRPGGLGMFLTLAAGYLGPALWGLLLILLAFAGRARA----------LLWLG 101
Query: 339 LLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIMGFL 390
+ LL+++ LW N G ++ LL L + + +++ F+
Sbjct: 102 VALLLVLLLWVR---NLFG-------LLILLLTGALLLALWWLAPPQVLAFV 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.426
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,399,606
Number of extensions: 4994844
Number of successful extensions: 8525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8334
Number of HSP's successfully gapped: 370
Length of query: 896
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 790
Effective length of database: 6,236,078
Effective search space: 4926501620
Effective search space used: 4926501620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (28.4 bits)