RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2376
(896 letters)
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 181 bits (459), Expect = 3e-52
Identities = 97/220 (44%), Positives = 133/220 (60%), Gaps = 11/220 (5%)
Query: 669 KKLNIKKYEDYCPNGLQVEGRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGE 728
+KLN DY PNGLQVEG+ + IVTGVTAS L+ AV + ADA++VHHGYFWKGE
Sbjct: 12 EKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGE 71
Query: 729 NSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGW 788
+ I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA +L +
Sbjct: 72 SPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWG 131
Query: 789 IGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKKIYEIGWCTGAAQNLLTD 847
+ +L I ++G+KP+ G + + + WCTG Q+ +
Sbjct: 132 ----------ELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDS 181
Query: 848 AINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
A GV A+I+GE+SE T++ +RE G+ ++AAGHHATER
Sbjct: 182 AARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG 221
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 265
Score = 140 bits (354), Expect = 6e-38
Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 31/235 (13%)
Query: 673 IKKYEDYCPNGLQVEGR----------SNINVIVTGVTASLDLIKTAVDMNADAILVHHG 722
I+ YE +CP +EG I ++ + + + A++ D I+V H
Sbjct: 7 IQAYEAFCPQEFSMEGDSRGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLIIVKHA 66
Query: 723 YFWKGENSNIVGIKKKRLE-QLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRF 781
++ + + ++ LI + I +Y H +D+ G N ++L T
Sbjct: 67 PIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFCQMLGIEETTYL 125
Query: 782 SKNN----IGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-----GDLNKKIY 832
+ IG IG I T +L + + + + DL K I
Sbjct: 126 QETGPERGIGRIGNIQP---------QTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPIS 176
Query: 833 EIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
+ C G+ Q+ DA+ +G YI+G+I T G+ GH+ E
Sbjct: 177 RVAICGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGLLALDPGHY-IEVI 230
>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872,
insert domain {Thermotoga maritima [TaxId: 2336]}
Length = 101
Score = 99.8 bits (248), Expect = 1e-25
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 496 RGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS 555
RGF+F + PLDMRMD+ ++A K L E + ++I +YGEE+ + +
Sbjct: 2 RGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR 61
Query: 556 ITPITR-TKQLVEIILKSIRGNKRYKNPATRTFQAIRIYI 594
T + V L S +R ++ AT+TFQAIRIY+
Sbjct: 62 PLNTTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYV 101
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872,
insert domain {Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 98.0 bits (243), Expect = 5e-25
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 496 RGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS 555
RGFS+ +GPLDMRM G +A + + + +++++ GEE A +IA+ IV R
Sbjct: 1 RGFSYQKEGPLDMRMG-LEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAARE 59
Query: 556 ITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYIN 595
PI T QL EI+ + G +R +PA +TFQA+RIY+N
Sbjct: 60 KAPIETTTQLAEIV-RKAVGFRRAGHPARKTFQALRIYVN 98
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 99.4 bits (247), Expect = 7e-23
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 677 EDYCPNGLQVEGRSN-INVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENS-NIVG 734
+ GLQ+ + + ++ + + +++ A+ + A+ I+ HH + + +
Sbjct: 21 MEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDK 80
Query: 735 IKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFS 782
K +E+ I N I +YA H +D+ G N LA+ L T +
Sbjct: 81 AYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLAEALGLQNTEVLA 127
Score = 76.3 bits (187), Expect = 3e-15
Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 15/162 (9%)
Query: 727 GENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNI 786
GE + +++ R+E +I + + HP + + N + +
Sbjct: 188 GETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDN-----KGETLGL 242
Query: 787 GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCTGAAQNLL 845
G IG ++ +T+ H+ + + K V+G L+ K+ ++ G +
Sbjct: 243 GKIGY--------LQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYI 294
Query: 846 TDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERY 887
A +G Y++G++ + + G+ GH+ E+
Sbjct: 295 NQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHN-VEKV 335
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 91.0 bits (225), Expect = 1e-21
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT 451
EA++ L + G+Y+DAT G GH+ ILER GR+I +D+D E+V+ +
Sbjct: 7 YQEALDLLAVRP---GGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLH 60
Query: 452 DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMD 511
+++ F L L ++++DGIL DLG+SS +++ + L + L+ +
Sbjct: 61 LPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEF-LEQAAE 119
Query: 512 ITRGISASKWLANATEFN--IKKVIQDYGEERFAKKI----AKEI 550
+ +A + + +K+ +++ G + KK KE
Sbjct: 120 VLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVLTKKPLVPSEKEA 164
Score = 30.5 bits (68), Expect = 0.54
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 593 YINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFN 638
+ EL L L+ + L GR+VVI+FHSLEDR+VK F+ +
Sbjct: 102 DPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRES 147
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 87.5 bits (216), Expect = 3e-20
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 392 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT 451
+ E I +L E+ I +D T G+GGHS ILE R+I ID D+E + + +
Sbjct: 12 VREVIEFLKPED---EKIILDCTVGEGGHSRAILEH-CPGCRIIGIDVDSEVLRIAEEKL 67
Query: 452 ---DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 508
R S+ + E D +LK I+K+DGIL DLG+S+ Q+ E R L + L
Sbjct: 68 KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEF-LKK 126
Query: 509 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSIT--PITRTKQLV 566
D+ I + E+R K+ + R +T P+ +++ +
Sbjct: 127 AEDLLNPGGR-----------IVVISFHSLEDRIVKETFRNSKKLRILTEKPVRPSEEEI 175
Query: 567 EI 568
Sbjct: 176 RE 177
Score = 37.8 bits (87), Expect = 0.002
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 593 YINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNTKIPHIDRR 647
N+EL+NL LK LN GRIVVISFHSLEDRIVK + K+ + +
Sbjct: 112 GENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKLRILTEK 166
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 33.9 bits (77), Expect = 0.077
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 416 GQGGHSCKILERLGKKGRLIAIDKDTESVS-LGNKITDSRFSIIHNCFTELDIILKKYNI 474
G G S + + + ++K + L K S I+ + N+
Sbjct: 53 GVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYS---NL 108
Query: 475 KKIDGILFDLGISSNQINNELRGFSFL 501
+ I SS+ IN++ + +
Sbjct: 109 IDEERIFVPEVQSSDHINDKFLTVANV 135
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 31.9 bits (71), Expect = 0.37
Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 3/173 (1%)
Query: 418 GGHSCKILERLGKKGRLIAIDKDTESVSLGN--KITDSRFSIIHNCFTELDIILKKYNIK 475
G + + + +DK T + + N I R ++ + +++ K
Sbjct: 15 GSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKA 74
Query: 476 KIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEF-NIKKVI 534
+ N +N+ G + + ++ + ++
Sbjct: 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLRE 134
Query: 535 QDYGEERFAKKIAKEIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTF 587
G + +Y +P + TK ++I+K+ + K +
Sbjct: 135 DLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCS 187
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia
coli [TaxId: 562]}
Length = 130
Score = 29.3 bits (66), Expect = 0.90
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 313 YWYLRHK--RIYIPCAGWGVFFIRLVIALLLLVIVALWG--NSYFNWLGMQAHP---IFR 365
W+ + R Y+ G V + I L+ + AL ++ ++ +P I
Sbjct: 14 TWWKKLPFYRFYMLREGTAVPAVWFSI-ELIFGLFALKNGPEAWAGFVDFLQNPVIVIIN 72
Query: 366 IVALLLILLFCGITYF-LALRIMGFLFLNEAIN 397
++ L L T+F LA + + +E +
Sbjct: 73 LITLAA-ALLHTKTWFELAPKAANIIVKDEKMG 104
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 29.7 bits (66), Expect = 1.4
Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 294 HSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVA------- 346
G + + + R R+ PC +GV + ++ ++ I A
Sbjct: 279 VGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGV 338
Query: 347 --LWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIMGFLF 391
G + + L +Q + ++ + +++ G+ F+ ++
Sbjct: 339 GFAEGVTMGHQLLVQ------LESIAITIVWSGVVAFIGYKLADLTV 379
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma)
subunit {Escherichia coli [TaxId: 562]}
Length = 216
Score = 28.9 bits (64), Expect = 2.2
Identities = 9/78 (11%), Positives = 28/78 (35%)
Query: 313 YWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLI 372
+ W + + V+ + ++I + YF ++ + A +++
Sbjct: 102 VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIIL 161
Query: 373 LLFCGITYFLALRIMGFL 390
+ I ++A + G +
Sbjct: 162 IHAILIHMYMAFWVKGSI 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.426
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,495,331
Number of extensions: 176814
Number of successful extensions: 679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 36
Length of query: 896
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 803
Effective length of database: 1,130,706
Effective search space: 907956918
Effective search space used: 907956918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.0 bits)