BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2377
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 189/328 (57%), Positives = 244/328 (74%), Gaps = 1/328 (0%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VRTRFAPSPTG +H+G IR+AL+ WA+AR G F+LRIEDTD+ RS+ A I++GM
Sbjct: 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMA 85
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
WLGL+YDEGP+YQ +R++RY E++ + Y Y S EE+++ R++QR+ GEKPRY+
Sbjct: 86 WLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPXYMSTEELDALRERQRAAGEKPRYD 145
Query: 124 RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGI 183
WRPEPGK+LP P PV+RF+NPL G + W+D +KG++ ISN+ELDDLV+ R DG
Sbjct: 146 GTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGT 205
Query: 184 PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKI 243
P YNFC +DD DM ITHVIRGDDH+NNTPRQINIL+ALG +P Y HLP V++ K+
Sbjct: 206 PMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKM 265
Query: 244 SKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQ 303
SKR A +M Y+ G+LPEA+LNYLARLGWSHG+ EIF+ +QF WF D ++L KSPAQ
Sbjct: 266 SKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEWF-DLEHLGKSPAQ 324
Query: 304 FNLKKLEWLNNFYIKSYDDKKLLNLIQP 331
++ KL WLNN YIK DD +L L +P
Sbjct: 325 YDHNKLNWLNNHYIKEADDARLAGLAKP 352
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 210/344 (61%), Gaps = 10/344 (2%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VR R APSPTGNLHIG RTA+F+W YARH G FILRIEDTD RS T+ I++G++
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRY- 122
WLGL +DEGP++Q+ R++ Y + I LL AYYCY + EE+E+ R +Q++ G+ PRY
Sbjct: 62 WLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYD 121
Query: 123 NRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKEL-DDLVIVRAD 181
NR P + R PVIRFK I W DL++G+++ +L D+VI RA
Sbjct: 122 NRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAA 181
Query: 182 -----GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVI 236
G P YN +DD M IT VIRG+DHI NTP+QI + +ALG T P + H P+++
Sbjct: 182 PRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLIL 241
Query: 237 DSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWS--HGNEEIFSIKQFCYWFNDC 294
+S K+SKR T I ++ G+L A+ NY+ LGWS G E+F++ F+
Sbjct: 242 NSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFS-F 300
Query: 295 KYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338
+ ++K+ A+F+ KL WLN YI+ + ++ L + P+ + Y
Sbjct: 301 ERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLWQGAGY 344
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 217/348 (62%), Gaps = 10/348 (2%)
Query: 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIID 60
M R R+APSPTG HIGGIRTALF++ +A+ G F+LRIEDTD +R + A +
Sbjct: 22 MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYS 81
Query: 61 GMKWLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKK 112
+KWLG+++DEGP + Q++R Y + YL+ + +AYYCY S E +E +K
Sbjct: 82 SLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKI 141
Query: 113 QRSFGEKPRYNRIWRPEPGKILPSIPINR-KPVIRFKNPLYGNITWNDLIKGKITISNKE 171
Q P Y+R R + + + I + KPV+RFK PL G+ +++D++ G+IT +NK+
Sbjct: 142 QNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDILLGRITWANKD 201
Query: 172 LD-DLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230
+ D VI+++DG+PTY+ +DD+ MKITHV+R + +++ P + + KA P Y
Sbjct: 202 ISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYC 261
Query: 231 HLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYW 290
HLPMV+ ++ K+SKR +T + + + G+LPEAI+NY+ LGWS+ ++ F K
Sbjct: 262 HLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQ 321
Query: 291 FNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338
F + ++KSPA F+ KL++ N++YI+ D+ L NL+ P +KK Y
Sbjct: 322 FFSIEKINKSPAIFDYHKLDFFNSYYIREKKDEDLFNLLLPFFQKKGY 369
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 209/351 (59%), Gaps = 18/351 (5%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VR RFAPSPTG LH+GG RTALF++ +AR G FILRIEDTD+ RS + + + ++
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 64 WLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRS 115
WLGL +DEGP + Q++R+ Y E L+ AYY Y+ EEIE R+K S
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLS 133
Query: 116 FGEKPRYN-----RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNK 170
G+ P Y+ + PE + + +P + FK P + ND++KG++
Sbjct: 134 EGKAPHYSQEXFEKFDTPERRREYEEKGL--RPAVFFKXP-RKDYVLNDVVKGEVVFKTG 190
Query: 171 ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230
+ D VI R++G+PTYNF +DD +ITHVIRGDDH++NT RQ+ + +A P +
Sbjct: 191 AIGDFVIXRSNGLPTYNFACVVDDXLXEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFA 250
Query: 231 HLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCY 289
H+ ++ + K+SKR AT + ++ G+LPEA++NYLA LGWSH +E+ ++++
Sbjct: 251 HVSTILGPDGKKLSKRHGATSVEAFRDXGYLPEALVNYLALLGWSHPEGKELLTLEELIS 310
Query: 290 WFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKYRI 340
F+ LS +PA F+ +KL+W N +Y+++ +KL L +P +K +I
Sbjct: 311 SFS-LDRLSPNPAIFDPQKLKWXNGYYLRNXPIEKLAELAKPFFEKAGIKI 360
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 199/335 (59%), Gaps = 22/335 (6%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VR RF PSPTG H+G +RTALF+WAYARH G F+ RIEDTD R + + ++D ++
Sbjct: 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 66
Query: 64 WLGLNYDE--------GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRS 115
WLGL++DE GP+ Q++R Y +++ LL+ AY+ +S+ EE+E+ + +
Sbjct: 67 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA---RHVA 123
Query: 116 FGEKPR--YNRIWRP-EPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKEL 172
G P+ Y+ R + + R+PV+R + P ++ WNDL++G +T + +
Sbjct: 124 AGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP-DDDLAWNDLVRGPVTFAAGSV 182
Query: 173 DDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL---GVT--LP 227
D + RA G P Y DD MKITHV+RG+D + +TPRQ+ + +AL GV +P
Sbjct: 183 PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIP 242
Query: 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQ 286
+ HLP V+ K+SKR +++ ++ +GF+PE +LNYLA LGWS ++ ++F + +
Sbjct: 243 KFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDE 302
Query: 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321
F D ++ SPA+F+ KK + LN +I+ D
Sbjct: 303 MVAAF-DVADVNSSPARFDQKKADALNAEHIRMLD 336
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 199/335 (59%), Gaps = 22/335 (6%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VR RF PSPTG H+G +RTALF+WAYARH G F+ RIEDTD R + + ++D ++
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 64 WLGLNYDE--------GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRS 115
WLGL++DE GP+ Q++R Y +++ LL+ AY+ +S+ EE+E+ + +
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA---RHVA 138
Query: 116 FGEKPR--YNRIWRP-EPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKEL 172
G P+ Y+ R + + R+PV+R + P ++ WNDL++G +T + +
Sbjct: 139 AGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP-DDDLAWNDLVRGPVTFAAGSV 197
Query: 173 DDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL---GVT--LP 227
D + RA G P Y DD MKITHV+RG+D + +TPRQ+ + +AL GV +P
Sbjct: 198 PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIP 257
Query: 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQ 286
+ HLP V+ K+SKR +++ ++ +GF+PE +LNYLA LGWS ++ ++F + +
Sbjct: 258 KFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDE 317
Query: 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321
F D ++ SPA+F+ KK + LN +I+ D
Sbjct: 318 MVAAF-DVADVNSSPARFDQKKADALNAEHIRMLD 351
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 199/335 (59%), Gaps = 22/335 (6%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VR RF PSPTG H+G +RTALF+WAYARH G F+ RIEDTD R + + ++D ++
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 64 WLGLNYDE--------GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRS 115
WLGL++DE GP+ Q++R Y +++ LL+ AY+ +S+ EE+E+ + +
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA---RHVA 138
Query: 116 FGEKPR--YNRIWRP-EPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKEL 172
G P+ Y+ R + + R+PV+R + P ++ WNDL++G +T + +
Sbjct: 139 AGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP-DDDLAWNDLVRGPVTFAAGSV 197
Query: 173 DDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL---GVT--LP 227
D + RA G P Y DD MKITHV+RG+D + +TPRQ+ + +AL GV +P
Sbjct: 198 PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIP 257
Query: 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQ 286
+ HLP V+ K+SKR +++ ++ +GF+PE +LNYLA LGWS ++ ++F + +
Sbjct: 258 KFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDE 317
Query: 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321
F D ++ SPA+F+ KK + LN +I+ D
Sbjct: 318 MVAAF-DVADVNSSPARFDQKKADALNAEHIRMLD 351
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 207/344 (60%), Gaps = 29/344 (8%)
Query: 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGM 62
+VR RFAPSPTG+LH+GG RTALF+W +AR G FILRIEDTD RS+ Q I++ +
Sbjct: 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 188
Query: 63 KWLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
+W GL++DEGP + Q++R+ Y E L+ + AYY V + E K+
Sbjct: 189 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYV---VYDKEDPSKELF 245
Query: 115 SFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDD 174
+ E P + E G P+ I+FK L G ++ DL+KG + N L+D
Sbjct: 246 TTYEYPHEYK----EKGH-----PVT----IKFK-VLPGKTSFEDLLKGYMEFDNSTLED 291
Query: 175 LVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234
+I++++G PTYNF +DD M+I+HV RG+DH++NTP+Q+ I +A G P + H+P+
Sbjct: 292 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351
Query: 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDC 294
++ S++ +SKR AT + +++++G L A++NYLA LGW +EIF+I++ F D
Sbjct: 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSF-DP 410
Query: 295 KYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338
K +S F+ +KLEW+N +++ D L +L + I+ KY
Sbjct: 411 KDISNKGVIFDYQKLEWVNGKHMRRID---LEDLKREFIEWAKY 451
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 207/344 (60%), Gaps = 29/344 (8%)
Query: 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGM 62
+VR RFAPSPTG+LH+GG RTALF+W +AR G FILRIEDTD RS+ Q I++ +
Sbjct: 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 84
Query: 63 KWLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
+W GL++DEGP + Q++R+ Y E L+ + AYY V + E K+
Sbjct: 85 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYV---VYDKEDPSKELF 141
Query: 115 SFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDD 174
+ E P + E G P+ I+FK L G ++ DL+KG + N L+D
Sbjct: 142 TTYEYPHEYK----EKGH-----PVT----IKFK-VLPGKTSFEDLLKGYMEFDNSTLED 187
Query: 175 LVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234
+I++++G PTYNF +DD M+I+HV RG+DH++NTP+Q+ I +A G P + H+P+
Sbjct: 188 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 247
Query: 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDC 294
++ S++ +SKR AT + +++++G L A++NYLA LGW +EIF+I++ F D
Sbjct: 248 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSF-DP 306
Query: 295 KYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338
K +S F+ +KLEW+N +++ D L +L + I+ KY
Sbjct: 307 KDISNKGVIFDYQKLEWVNGKHMRRID---LEDLKREFIEWAKY 347
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 207/344 (60%), Gaps = 29/344 (8%)
Query: 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGM 62
+VR RFAPSPTG+LH+GG RTALF+W +AR G FILRIEDTD RS+ Q I++ +
Sbjct: 24 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 83
Query: 63 KWLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
+W GL++DEGP + Q++R+ Y E L+ + AYY V + E K+
Sbjct: 84 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYV---VYDKEDPSKELF 140
Query: 115 SFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDD 174
+ E P + E G P+ I+FK L G ++ DL+KG + N L+D
Sbjct: 141 TTYEYPHEYK----EKGH-----PVT----IKFK-VLPGKTSFEDLLKGYMEFDNSTLED 186
Query: 175 LVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234
+I++++G PTYNF +DD M+I+HV RG+DH++NTP+Q+ I +A G P + H+P+
Sbjct: 187 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 246
Query: 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDC 294
++ S++ +SKR AT + +++++G L A++NYLA LGW +EIF+I++ F D
Sbjct: 247 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSF-DP 305
Query: 295 KYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338
K +S F+ +KLEW+N +++ D L +L + I+ KY
Sbjct: 306 KDISNKGVIFDYQKLEWVNGKHMRRID---LEDLKREFIEWAKY 346
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 188/333 (56%), Gaps = 29/333 (8%)
Query: 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGM 62
+V TR APSPTG+ H+G ALF++A+AR G FI+RIEDTD R A + I+ +
Sbjct: 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 63 KWLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
KWLGL+YDEGP + Q++R+ Y + LL +AY + + EE+E RK++
Sbjct: 61 KWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 115 SFGEKPR-------YNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITI 167
+ + R R R EP VIR K P G D ++G +
Sbjct: 121 GYDGRARNIPPEEAEERARRGEPH------------VIRLKVPRPGTTEVKDELRGVVVY 168
Query: 168 SNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLP 227
N+E+ D+V++++DG PTY+ +DD M +T VIR ++ + +TP + + +A G P
Sbjct: 169 DNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAP 228
Query: 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQ 286
+ H+P++ + +K KISKRK T + +YK +GFLPEA+ NYL +G+S + EIF++++
Sbjct: 229 RFYHMPLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEE 288
Query: 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS 319
F F + P F+L+KL W+N YI+
Sbjct: 289 FIQAFTWERVSLGGPV-FDLEKLRWMNGKYIRE 320
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 188/333 (56%), Gaps = 29/333 (8%)
Query: 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGM 62
+V TR APSPTG+ H+G ALF++A+AR G FI+RIEDTD R A + I+ +
Sbjct: 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 63 KWLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
KWLGL+YDEGP + Q++R+ Y + LL +AY + + EE+E RK++
Sbjct: 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 115 SFGEKPR-------YNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITI 167
+ + R R R EP VIR K P G D ++G +
Sbjct: 121 GYDGRARNIPPEEAEERARRGEPH------------VIRLKVPRPGTTEVKDELRGVVVY 168
Query: 168 SNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLP 227
N+E+ D+V++++DG PTY+ +DD M +T VIR ++ + +TP + + +A G P
Sbjct: 169 DNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAP 228
Query: 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQ 286
+ H+P++ + +K KISKRK T + +YK +GFLPEA+ NYL +G+S + EIF++++
Sbjct: 229 RFYHMPLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEE 288
Query: 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS 319
F F + P F+L+KL W+N YI+
Sbjct: 289 FIQAFTWERVSLGGPV-FDLEKLRWMNGKYIRE 320
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 21/282 (7%)
Query: 7 RFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLG 66
RFAPSP+G LH G + AL S+ AR G +++RIED D R A +TI+ ++ G
Sbjct: 9 RFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYG 68
Query: 67 LNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIW 126
L++D +Q++R + Y E + +L +YYC + I+S Y+
Sbjct: 69 LHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGI---------YDGHC 119
Query: 127 RPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNK-ELDDLVIVRADGIPT 185
R +L P N IR ++P+ + D ++G I K +D +I R DG+
Sbjct: 120 R-----VLHHGPDNAAVRIRQQHPV---TQFTDQLRGIIHADEKLAREDFIIHRRDGLFA 171
Query: 186 YNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISK 245
YN +DD +T ++RG D I T RQI++ + G +P Y HLP+ ++ K+SK
Sbjct: 172 YNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSK 231
Query: 246 RKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQF 287
+ A + + L A L +L + +H + FS++Q
Sbjct: 232 QNHAPALPKGDPRPVLIAA-LQFLGQQAEAHWQD--FSVEQI 270
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 127/290 (43%), Gaps = 36/290 (12%)
Query: 7 RFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLG 66
RFAP+P+G LHIG R A+ + YAR ++G ILRIEDTD R A I ++WLG
Sbjct: 100 RFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLG 159
Query: 67 LNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQ-----RSFGEKPR 121
+ +DE Q+ R+ Y+E L+ AY C EE + + RS G +
Sbjct: 160 VEWDE-TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFREN 218
Query: 122 YNRIWRPEPGKILPSIPINRKPVIRFKNPL-YGNITWNDLIKGKITISNKELDDLVIVRA 180
R WR E ++ V+R K L + N D + +I + R
Sbjct: 219 LQR-WR-EMFEMKEG-----SAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTG---TRY 268
Query: 181 DGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLP---FYGHLPMVID 237
P NF A+DD + +THV+RG DH+ N +Q + + LG P YG L M D
Sbjct: 269 RVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKM--D 326
Query: 238 SNKVKISKRKEA--------------TDIMYYKKKGFLPEAILNYLARLG 273
+ S +E + ++G PEAI + +G
Sbjct: 327 DVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 121/306 (39%), Gaps = 38/306 (12%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P+G H+G + +L + AR + G F LR++DT+ + +I D +K
Sbjct: 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLK 126
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
WLGL++ E +Y + +RY+ L+ AY S EE+ R + G Y
Sbjct: 127 WLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYR 186
Query: 124 RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVR---- 179
S+ N + R K + + K +T N +L D V+ R
Sbjct: 187 DR----------SVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNK 236
Query: 180 -----ADG---IPTYNFCAAIDDWDMKITHVIRGDDHINN---------------TPRQI 216
+D P Y+F + D +TH + + ++N P Q
Sbjct: 237 PHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQY 296
Query: 217 NI-LKALGVTLPFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWS 275
+ L T+ L ++ + +V + ++ G PEA+ + A++G S
Sbjct: 297 EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVS 356
Query: 276 HGNEEI 281
N +
Sbjct: 357 RTNRTV 362
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 18 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 77
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 78 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 126
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 84
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 85 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 133
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 84
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 85 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 133
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 84
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 85 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 133
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 26 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 85
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 86 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 134
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 26 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 85
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 86 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 134
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 26 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 85
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+I +R
Sbjct: 86 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYR 134
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I +
Sbjct: 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 84
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
++WLG ++ Y + ++ L++ AY + E+ +R
Sbjct: 85 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTREYR 133
>pdb|3QYF|A Chain A, Crystal Structure Of The Crispr-Associated Protein Sso1393
From Sulfolobus Solfataricus
pdb|3QYF|B Chain B, Crystal Structure Of The Crispr-Associated Protein Sso1393
From Sulfolobus Solfataricus
Length = 324
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 215 QINILKALGVTLPFYGHLPMVIDSNKVKISKRKEATDIMYYKKK-GFLPEAILNYLARLG 273
++ +K + FY + + D +I K KE + +Y G PE+I LA G
Sbjct: 124 ELVTVKTISSEENFYEGIVDLFDKVIYRILKFKEQDNEVYINATPGLKPESIFLTLA--G 181
Query: 274 WSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSY 320
G + I+ Q FND L P K L+WL F I Y
Sbjct: 182 LLAGADLIYYKYQ---EFNDVVILPSPPITIRPKYLDWLIRFAISGY 225
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 223 GVTLPFY-GHLPMVIDSNKVKISKRKEATDIMYYKKKGF---------------LPEAIL 266
G+TL + G ++ D++ V +S+ + A D+ + + G PE I
Sbjct: 158 GLTLDWLIGATVVLADASIVHVSETENA-DLFWALRGGGGGFAIVSEFEFNTFEAPEIIT 216
Query: 267 NYLARLGWSHGNEEIFSIKQFCYWFNDC--KYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324
Y W+ + + +K W + + LS + N L W NF+ + D KK
Sbjct: 217 TYQVTTTWNR-KQHVAGLKALQDWAQNTMPRELSMR-LEINANALNWEGNFFGNAKDLKK 274
Query: 325 LLNLIQPIIKK 335
+L QPI+KK
Sbjct: 275 IL---QPIMKK 282
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 223 GVTLPFY-GHLPMVIDSNKVKISKRKEATDIMYYKKKGF---------------LPEAIL 266
G+TL + G ++ D++ V +S+ + A D+ + + G PE I
Sbjct: 158 GLTLDWLIGATVVLADASIVHVSETENA-DLFWALRGGGGGFAIVSEFEFNTFEAPEIIT 216
Query: 267 NYLARLGWSHGNEEIFSIKQFCYWFNDC--KYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324
Y W+ + + +K W + + LS + N L W NF+ + D KK
Sbjct: 217 TYQVTTTWNR-KQHVAGLKALQDWAQNTMPRELSMR-LEINANALNWEGNFFGNAKDLKK 274
Query: 325 LLNLIQPIIKK 335
+L QPI+KK
Sbjct: 275 IL---QPIMKK 282
>pdb|3C8K|D Chain D, The Crystal Structure Of Ly49c Bound To H-2kb
Length = 125
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 29 AYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71
A +H+ G+ IL+IED D + +I G W+GL+YD+
Sbjct: 28 ANCQHY-GVPILKIEDED---ELKFLQRHVIPGNYWIGLSYDK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,023,951
Number of Sequences: 62578
Number of extensions: 481405
Number of successful extensions: 1216
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 31
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)