Query psy2377
Match_columns 340
No_of_seqs 222 out of 1674
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 23:25:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02627 glutamyl-tRNA synthet 100.0 9E-103 2E-107 773.7 34.4 335 2-338 44-389 (535)
2 PRK12558 glutamyl-tRNA synthet 100.0 6E-100 1E-104 745.3 32.3 331 3-337 2-334 (445)
3 PRK14895 gltX glutamyl-tRNA sy 100.0 5.2E-99 1E-103 746.0 36.3 332 2-337 3-334 (513)
4 PRK12410 glutamylglutaminyl-tR 100.0 1.4E-99 3E-104 739.5 31.8 320 5-330 1-321 (433)
5 PRK01406 gltX glutamyl-tRNA sy 100.0 4.2E-97 9E-102 736.6 36.0 335 1-337 2-346 (476)
6 KOG1149|consensus 100.0 1.3E-97 3E-102 701.6 25.4 331 3-336 33-380 (524)
7 TIGR00464 gltX_bact glutamyl-t 100.0 2.4E-94 5.2E-99 716.4 36.2 332 3-336 1-335 (470)
8 COG0008 GlnS Glutamyl- and glu 100.0 2.9E-92 6.3E-97 694.6 29.0 331 4-338 10-347 (472)
9 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1.1E-89 2.4E-94 642.6 30.5 292 1-306 3-298 (299)
10 PF00749 tRNA-synt_1c: tRNA sy 100.0 4.7E-91 1E-95 661.8 17.8 307 3-311 1-314 (314)
11 TIGR03838 queuosine_YadB gluta 100.0 8.9E-86 1.9E-90 609.9 27.2 270 4-288 1-272 (272)
12 cd00418 GlxRS_core catalytic c 100.0 6.7E-75 1.4E-79 524.2 23.8 228 3-318 1-229 (230)
13 PTZ00402 glutamyl-tRNA synthet 100.0 2.8E-74 6.1E-79 575.4 25.4 281 2-325 51-364 (601)
14 PLN03233 putative glutamate-tR 100.0 5.3E-74 1.2E-78 568.2 25.3 275 2-324 10-321 (523)
15 TIGR00440 glnS glutaminyl-tRNA 100.0 4.2E-74 9.1E-79 569.6 21.3 300 4-318 1-337 (522)
16 PRK05347 glutaminyl-tRNA synth 100.0 3.8E-72 8.2E-77 556.6 27.0 277 2-324 28-345 (554)
17 PLN02859 glutamine-tRNA ligase 100.0 1.1E-71 2.4E-76 568.6 24.3 294 2-313 263-588 (788)
18 PRK04156 gltX glutamyl-tRNA sy 100.0 7.3E-71 1.6E-75 551.8 26.1 275 2-324 100-413 (567)
19 TIGR00463 gltX_arch glutamyl-t 100.0 5.1E-71 1.1E-75 552.3 24.9 276 2-324 92-404 (560)
20 cd00808 GluRS_core catalytic c 100.0 2.1E-70 4.5E-75 498.6 25.2 229 3-318 1-238 (239)
21 PLN02907 glutamate-tRNA ligase 100.0 6.7E-70 1.4E-74 561.9 24.6 276 2-325 212-524 (722)
22 PRK14703 glutaminyl-tRNA synth 100.0 5.8E-69 1.3E-73 553.8 25.7 253 2-277 30-324 (771)
23 cd00807 GlnRS_core catalytic c 100.0 1.9E-66 4.1E-71 469.4 21.4 218 3-322 1-237 (238)
24 PTZ00437 glutaminyl-tRNA synth 100.0 5.6E-66 1.2E-70 511.9 24.4 284 2-323 50-360 (574)
25 cd09287 GluRS_non_core catalyt 100.0 7.1E-64 1.5E-68 454.2 21.3 221 3-322 1-239 (240)
26 KOG1147|consensus 100.0 7.2E-49 1.6E-53 378.4 15.8 278 1-326 198-512 (712)
27 KOG1148|consensus 100.0 4.7E-46 1E-50 361.9 7.5 292 2-327 247-580 (764)
28 cd00671 ArgRS_core catalytic c 100.0 1.1E-27 2.4E-32 216.2 15.8 181 8-248 7-212 (212)
29 COG0215 CysS Cysteinyl-tRNA sy 99.9 2.7E-26 5.8E-31 223.5 12.7 234 9-277 29-303 (464)
30 PRK01611 argS arginyl-tRNA syn 99.9 4.7E-25 1E-29 222.9 17.1 243 4-314 113-387 (507)
31 PRK00260 cysS cysteinyl-tRNA s 99.9 1.7E-24 3.6E-29 216.4 18.7 224 8-273 29-297 (463)
32 PF01406 tRNA-synt_1e: tRNA sy 99.9 1.2E-25 2.5E-30 209.3 8.9 230 10-276 16-286 (300)
33 PRK14536 cysS cysteinyl-tRNA s 99.9 4E-24 8.6E-29 212.9 19.9 227 9-276 30-314 (490)
34 TIGR00435 cysS cysteinyl-tRNA 99.9 5.2E-24 1.1E-28 212.7 19.6 225 9-275 28-298 (465)
35 PRK14534 cysS cysteinyl-tRNA s 99.9 8.7E-24 1.9E-28 209.5 18.9 229 9-276 28-314 (481)
36 PLN02946 cysteine-tRNA ligase 99.9 7.1E-24 1.5E-28 213.2 15.6 225 9-276 87-357 (557)
37 PRK12418 cysteinyl-tRNA synthe 99.9 7.2E-24 1.6E-28 205.4 12.6 237 9-276 16-296 (384)
38 TIGR03447 mycothiol_MshC cyste 99.9 1.1E-23 2.3E-28 205.3 13.6 238 9-276 43-323 (411)
39 PRK14535 cysS cysteinyl-tRNA s 99.9 3E-22 6.4E-27 203.2 20.3 225 9-275 255-541 (699)
40 PTZ00399 cysteinyl-tRNA-synthe 99.9 1E-20 2.2E-25 195.2 17.3 234 9-276 67-349 (651)
41 COG0018 ArgS Arginyl-tRNA synt 99.8 3.8E-20 8.2E-25 187.7 19.2 301 9-337 125-474 (577)
42 PRK12451 arginyl-tRNA syntheta 99.8 9.4E-20 2E-24 186.1 15.1 299 8-337 120-465 (562)
43 PLN02286 arginine-tRNA ligase 99.8 3.1E-19 6.7E-24 182.6 16.9 296 8-337 124-476 (576)
44 TIGR00456 argS arginyl-tRNA sy 99.8 1.3E-18 2.9E-23 178.0 17.2 304 8-337 119-464 (566)
45 KOG2007|consensus 99.8 2.8E-19 6.1E-24 173.1 10.8 229 9-277 62-340 (586)
46 PF00750 tRNA-synt_1d: tRNA sy 99.7 9.6E-18 2.1E-22 162.5 9.9 279 9-306 28-354 (354)
47 cd00668 Ile_Leu_Val_MetRS_core 99.7 2.5E-16 5.4E-21 150.2 15.2 240 5-273 4-304 (312)
48 PRK11893 methionyl-tRNA synthe 99.7 5.4E-16 1.2E-20 157.2 18.0 257 4-273 4-330 (511)
49 COG0143 MetG Methionyl-tRNA sy 99.7 1.2E-15 2.6E-20 154.0 16.5 269 4-290 8-380 (558)
50 cd00802 class_I_aaRS_core cata 99.7 2.5E-16 5.4E-21 133.4 9.6 62 186-247 78-143 (143)
51 cd00814 MetRS_core catalytic c 99.6 3.5E-14 7.6E-19 135.9 18.6 95 4-98 3-116 (319)
52 PRK00133 metG methionyl-tRNA s 99.6 2.2E-14 4.8E-19 149.9 17.6 95 4-98 5-118 (673)
53 TIGR00398 metG methionyl-tRNA 99.6 2.1E-14 4.5E-19 146.4 16.0 95 4-98 2-115 (530)
54 PLN02224 methionine-tRNA ligas 99.6 1.9E-14 4.1E-19 147.9 15.4 256 4-273 72-397 (616)
55 PRK12267 methionyl-tRNA synthe 99.6 1.5E-14 3.3E-19 150.7 12.4 256 4-273 7-330 (648)
56 PLN02610 probable methionyl-tR 99.5 6.8E-14 1.5E-18 147.8 15.5 282 4-289 20-395 (801)
57 cd00672 CysRS_core catalytic c 99.5 2.2E-13 4.8E-18 123.0 16.6 87 186-274 113-206 (213)
58 PRK12268 methionyl-tRNA synthe 99.5 1.1E-13 2.3E-18 142.0 15.2 94 4-98 6-120 (556)
59 PRK00750 lysK lysyl-tRNA synth 99.5 4.2E-13 9.1E-18 135.7 19.0 238 4-271 25-309 (510)
60 cd00818 IleRS_core catalytic c 99.5 4.2E-14 9E-19 136.4 11.1 91 8-98 8-136 (338)
61 cd00674 LysRS_core_class_I cat 99.5 1.7E-12 3.7E-17 125.1 21.5 238 5-273 22-306 (353)
62 cd00817 ValRS_core catalytic c 99.5 2.3E-13 5E-18 133.3 15.8 94 5-98 5-135 (382)
63 PF09334 tRNA-synt_1g: tRNA sy 99.5 1.7E-14 3.7E-19 141.5 7.8 277 5-292 3-376 (391)
64 cd00806 TrpRS_core catalytic c 99.5 1.8E-12 4E-17 121.7 18.5 242 11-333 7-277 (280)
65 cd00812 LeuRS_core catalytic c 99.5 2E-13 4.4E-18 130.3 10.4 94 5-98 4-118 (314)
66 TIGR00467 lysS_arch lysyl-tRNA 99.3 9.6E-10 2.1E-14 111.0 21.8 233 5-271 21-303 (515)
67 TIGR00422 valS valyl-tRNA synt 99.2 4.7E-10 1E-14 120.6 20.3 90 8-98 40-167 (861)
68 PRK13208 valS valyl-tRNA synth 99.2 6.3E-10 1.4E-14 118.7 18.2 89 9-98 46-169 (800)
69 PRK12556 tryptophanyl-tRNA syn 99.1 8.3E-09 1.8E-13 99.1 17.3 195 11-271 11-226 (332)
70 KOG0436|consensus 99.0 1.6E-09 3.4E-14 104.0 10.4 249 11-274 49-376 (578)
71 PF01921 tRNA-synt_1f: tRNA sy 99.0 2.9E-09 6.3E-14 102.2 10.7 235 4-271 25-311 (360)
72 TIGR00233 trpS tryptophanyl-tR 98.9 4.7E-08 1E-12 93.9 17.6 185 11-271 10-217 (328)
73 COG0180 TrpS Tryptophanyl-tRNA 98.9 1E-08 2.2E-13 96.9 11.6 195 10-272 12-224 (314)
74 PRK12284 tryptophanyl-tRNA syn 98.9 1.3E-07 2.9E-12 92.8 17.9 199 10-271 9-226 (431)
75 PRK12285 tryptophanyl-tRNA syn 98.9 4.4E-07 9.5E-12 88.3 21.0 186 11-271 74-276 (368)
76 PRK12282 tryptophanyl-tRNA syn 98.8 2.2E-07 4.8E-12 89.4 18.2 193 11-271 10-220 (333)
77 cd00395 Tyr_Trp_RS_core cataly 98.8 7.6E-07 1.7E-11 83.5 19.5 232 11-329 7-266 (273)
78 cd00805 TyrRS_core catalytic c 98.7 1E-06 2.2E-11 82.5 18.5 239 11-333 8-266 (269)
79 PRK12283 tryptophanyl-tRNA syn 98.7 8.6E-07 1.9E-11 86.4 18.0 90 11-108 10-106 (398)
80 PRK08560 tyrosyl-tRNA syntheta 98.7 2.3E-06 4.9E-11 82.4 19.2 191 10-271 37-239 (329)
81 PRK05912 tyrosyl-tRNA syntheta 98.6 4.2E-06 9E-11 82.8 18.7 129 182-330 168-301 (408)
82 TIGR00396 leuS_bact leucyl-tRN 98.5 3.9E-07 8.5E-12 97.7 8.9 94 4-98 32-147 (842)
83 PRK00390 leuS leucyl-tRNA synt 98.5 3.9E-07 8.4E-12 97.4 8.3 93 5-98 36-150 (805)
84 COG0495 LeuS Leucyl-tRNA synth 98.4 2.4E-07 5.2E-12 97.5 6.3 94 5-98 38-152 (814)
85 PLN02886 aminoacyl-tRNA ligase 98.4 8.3E-07 1.8E-11 86.6 8.8 89 11-107 54-148 (389)
86 PRK13354 tyrosyl-tRNA syntheta 98.4 2.1E-05 4.6E-10 77.8 18.8 101 198-318 186-287 (410)
87 PRK00927 tryptophanyl-tRNA syn 98.4 8.8E-07 1.9E-11 85.4 8.5 188 11-271 9-220 (333)
88 COG1384 LysS Lysyl-tRNA synthe 98.3 6E-06 1.3E-10 82.0 12.9 73 198-271 229-306 (521)
89 KOG0435|consensus 98.3 4.4E-07 9.5E-12 91.8 4.5 95 4-98 60-175 (876)
90 PLN02563 aminoacyl-tRNA ligase 98.3 2.5E-06 5.5E-11 92.3 8.7 93 5-98 114-229 (963)
91 PTZ00126 tyrosyl-tRNA syntheta 98.2 0.00019 4.2E-09 70.4 20.8 83 183-271 195-282 (383)
92 KOG2713|consensus 98.2 8.9E-06 1.9E-10 75.0 10.4 177 10-249 20-218 (347)
93 PLN02943 aminoacyl-tRNA ligase 98.2 4E-06 8.8E-11 91.1 9.2 92 6-98 93-222 (958)
94 PTZ00419 valyl-tRNA synthetase 98.2 3.6E-06 7.8E-11 92.1 8.4 93 5-98 64-195 (995)
95 PLN02486 aminoacyl-tRNA ligase 98.2 0.00043 9.4E-09 67.8 21.6 189 11-273 81-292 (383)
96 TIGR00392 ileS isoleucyl-tRNA 98.2 5.3E-06 1.2E-10 89.6 8.8 93 5-98 40-171 (861)
97 PRK05729 valS valyl-tRNA synth 98.1 6.5E-06 1.4E-10 89.0 8.7 89 9-98 44-170 (874)
98 PRK05743 ileS isoleucyl-tRNA s 98.1 6.5E-06 1.4E-10 89.2 8.6 92 6-98 54-180 (912)
99 PLN02843 isoleucyl-tRNA synthe 98.1 6.5E-06 1.4E-10 89.6 8.5 91 7-98 38-164 (974)
100 PF00133 tRNA-synt_1: tRNA syn 98.1 8.6E-06 1.9E-10 84.6 9.0 90 8-98 30-158 (601)
101 PLN02381 valyl-tRNA synthetase 98.1 7.8E-06 1.7E-10 89.7 9.0 92 6-98 133-263 (1066)
102 PF00579 tRNA-synt_1b: tRNA sy 98.1 1E-05 2.2E-10 76.5 8.5 194 11-271 13-223 (292)
103 PTZ00427 isoleucine-tRNA ligas 98.1 8.4E-06 1.8E-10 90.0 8.9 89 9-98 110-237 (1205)
104 PRK14900 valS valyl-tRNA synth 98.1 7.5E-06 1.6E-10 89.8 8.3 90 8-98 55-183 (1052)
105 COG0525 ValS Valyl-tRNA synthe 98.1 1.3E-05 2.9E-10 84.6 9.0 89 9-98 41-167 (877)
106 PRK06039 ileS isoleucyl-tRNA s 98.1 1.1E-05 2.4E-10 88.1 8.5 90 8-98 48-176 (975)
107 TIGR00395 leuS_arch leucyl-tRN 98.0 6.9E-06 1.5E-10 89.3 6.1 93 5-98 29-167 (938)
108 PLN02882 aminoacyl-tRNA ligase 98.0 1.4E-05 3.1E-10 88.3 8.5 89 9-98 46-173 (1159)
109 PRK13804 ileS isoleucyl-tRNA s 97.9 2.6E-05 5.7E-10 84.9 8.8 90 8-98 61-188 (961)
110 KOG0432|consensus 97.7 0.0001 2.2E-09 77.0 7.2 90 9-98 83-210 (995)
111 PLN02959 aminoacyl-tRNA ligase 97.6 0.00017 3.7E-09 79.5 8.4 43 229-273 706-749 (1084)
112 PTZ00348 tyrosyl-tRNA syntheta 97.5 0.0012 2.6E-08 69.0 12.5 84 182-271 159-247 (682)
113 KOG4426|consensus 97.4 0.00098 2.1E-08 65.0 9.9 282 4-311 190-521 (656)
114 TIGR00234 tyrS tyrosyl-tRNA sy 97.3 0.0039 8.4E-08 61.2 12.5 66 183-248 162-227 (377)
115 TIGR00395 leuS_arch leucyl-tRN 96.9 0.0039 8.4E-08 68.2 9.7 74 198-273 573-651 (938)
116 TIGR00392 ileS isoleucyl-tRNA 96.8 0.0044 9.4E-08 67.3 8.9 73 198-272 564-641 (861)
117 PF00133 tRNA-synt_1: tRNA syn 96.8 0.0032 6.9E-08 65.6 7.6 76 197-273 513-592 (601)
118 COG0162 TyrS Tyrosyl-tRNA synt 96.7 0.0083 1.8E-07 59.1 9.3 66 184-249 166-231 (401)
119 PRK06039 ileS isoleucyl-tRNA s 96.6 0.0072 1.6E-07 66.4 9.1 77 197-274 544-624 (975)
120 PRK12300 leuS leucyl-tRNA synt 96.6 0.0052 1.1E-07 66.9 7.7 72 200-273 532-608 (897)
121 KOG1195|consensus 96.5 0.025 5.5E-07 56.4 10.7 134 172-314 293-443 (567)
122 COG0060 IleS Isoleucyl-tRNA sy 96.4 0.0055 1.2E-07 65.9 6.3 90 8-98 56-183 (933)
123 PLN02882 aminoacyl-tRNA ligase 96.4 0.012 2.7E-07 65.5 9.2 75 198-273 567-645 (1159)
124 PRK05743 ileS isoleucyl-tRNA s 96.4 0.015 3.3E-07 63.4 9.7 73 197-271 544-621 (912)
125 PRK12300 leuS leucyl-tRNA synt 96.4 0.0062 1.4E-07 66.3 6.6 82 16-98 1-128 (897)
126 COG0525 ValS Valyl-tRNA synthe 96.3 0.016 3.6E-07 61.8 8.6 74 199-273 479-556 (877)
127 PRK05729 valS valyl-tRNA synth 96.2 0.015 3.2E-07 63.3 8.5 73 200-273 475-551 (874)
128 PLN02843 isoleucyl-tRNA synthe 96.0 0.018 4E-07 63.1 7.8 76 199-274 565-652 (974)
129 PTZ00427 isoleucine-tRNA ligas 95.5 0.051 1.1E-06 60.8 8.9 75 198-273 673-751 (1205)
130 PLN02943 aminoacyl-tRNA ligase 95.5 0.04 8.6E-07 60.5 8.0 69 199-273 537-614 (958)
131 PRK13804 ileS isoleucyl-tRNA s 95.4 0.043 9.4E-07 60.2 8.0 71 200-272 585-660 (961)
132 PRK14900 valS valyl-tRNA synth 95.1 0.061 1.3E-06 59.6 7.9 45 228-273 524-569 (1052)
133 PLN02959 aminoacyl-tRNA ligase 94.7 0.069 1.5E-06 59.3 7.0 37 5-41 48-87 (1084)
134 PLN02381 valyl-tRNA synthetase 94.6 0.087 1.9E-06 58.4 7.4 78 197-274 607-724 (1066)
135 PTZ00419 valyl-tRNA synthetase 94.5 0.061 1.3E-06 59.3 6.0 76 198-273 538-653 (995)
136 COG0495 LeuS Leucyl-tRNA synth 94.2 0.061 1.3E-06 57.4 5.0 78 195-273 523-610 (814)
137 PLN02563 aminoacyl-tRNA ligase 93.6 0.082 1.8E-06 57.9 4.7 31 242-273 723-754 (963)
138 TIGR00396 leuS_bact leucyl-tRN 93.2 0.096 2.1E-06 56.8 4.5 76 196-273 518-635 (842)
139 PRK00390 leuS leucyl-tRNA synt 93.2 0.14 3E-06 55.4 5.6 69 197-273 522-601 (805)
140 COG0060 IleS Isoleucyl-tRNA sy 91.9 0.11 2.3E-06 56.3 2.7 73 200-273 557-633 (933)
141 KOG0433|consensus 89.5 1.5 3.2E-05 46.2 8.1 87 12-99 66-188 (937)
142 KOG0432|consensus 88.9 0.66 1.4E-05 49.5 5.3 45 205-249 553-600 (995)
143 KOG0434|consensus 88.7 1.6 3.4E-05 45.7 7.7 88 9-98 46-173 (1070)
144 cd02156 nt_trans nucleotidyl t 87.6 1.3 2.8E-05 35.0 5.2 37 6-47 2-38 (105)
145 KOG0437|consensus 79.9 2.5 5.5E-05 44.6 4.6 59 10-70 53-116 (1080)
146 KOG2623|consensus 78.5 18 0.0004 35.6 9.7 118 184-321 209-333 (467)
147 KOG1247|consensus 76.4 1.9 4.2E-05 42.5 2.5 95 2-96 15-129 (567)
148 KOG0437|consensus 75.5 0.8 1.7E-05 48.2 -0.4 75 198-275 663-743 (1080)
149 KOG0434|consensus 68.5 2.2 4.8E-05 44.7 0.9 42 229-271 588-630 (1070)
150 KOG0433|consensus 65.4 2.2 4.8E-05 45.0 0.2 43 228-270 599-647 (937)
151 PF00627 UBA: UBA/TS-N domain; 52.1 37 0.0008 21.3 4.2 23 252-274 6-28 (37)
152 PRK13793 nicotinamide-nucleoti 43.3 22 0.00048 31.7 2.8 58 4-89 9-66 (196)
153 KOG3349|consensus 42.5 16 0.00036 31.3 1.8 20 84-103 117-136 (170)
154 KOG1247|consensus 40.9 60 0.0013 32.4 5.6 52 236-289 337-390 (567)
155 smart00165 UBA Ubiquitin assoc 39.2 84 0.0018 19.3 4.4 23 252-274 5-27 (37)
156 COG1056 NadR Nicotinamide mono 36.6 22 0.00047 31.1 1.7 17 4-25 8-24 (172)
157 TIGR00440 glnS glutaminyl-tRNA 34.6 41 0.00088 34.6 3.5 144 165-323 152-315 (522)
158 PF08671 SinI: Anti-repressor 33.4 60 0.0013 19.8 2.8 20 252-271 9-28 (30)
159 PRK12451 arginyl-tRNA syntheta 31.0 61 0.0013 33.7 4.2 49 49-98 231-279 (562)
160 PRK14829 undecaprenyl pyrophos 31.0 32 0.00069 31.8 1.9 47 227-275 13-60 (243)
161 PF12668 DUF3791: Protein of u 30.5 2E+02 0.0042 20.3 6.0 56 264-337 7-62 (62)
162 KOG2145|consensus 29.0 57 0.0012 31.0 3.2 60 12-71 95-161 (397)
163 PRK14827 undecaprenyl pyrophos 28.9 35 0.00075 32.5 1.8 46 228-275 67-113 (296)
164 COG4720 Predicted membrane pro 27.6 49 0.0011 29.0 2.3 25 10-34 31-55 (177)
165 cd00194 UBA Ubiquitin Associat 27.4 1.6E+02 0.0034 18.2 4.4 23 252-274 5-27 (38)
166 PF06971 Put_DNA-bind_N: Putat 26.6 97 0.0021 21.2 3.2 30 77-109 8-37 (50)
167 cd02167 NMNAT_NadR Nicotinamid 25.7 47 0.001 28.3 2.0 18 3-25 3-20 (158)
168 PTZ00349 dehydrodolichyl dipho 24.9 43 0.00094 32.2 1.7 58 215-275 7-65 (322)
169 KOG0435|consensus 24.4 51 0.0011 35.0 2.1 33 240-273 615-648 (876)
170 TIGR00055 uppS undecaprenyl di 24.1 54 0.0012 29.9 2.1 44 230-275 1-45 (226)
171 TIGR00456 argS arginyl-tRNA sy 22.9 85 0.0018 32.6 3.5 61 38-98 215-282 (566)
172 PF13331 DUF4093: Domain of un 22.8 1.4E+02 0.003 23.0 3.8 32 259-290 6-39 (87)
173 PF10096 DUF2334: Uncharacteri 22.5 1.7E+02 0.0036 26.8 5.0 57 38-95 2-69 (243)
174 PRK14834 undecaprenyl pyrophos 21.2 74 0.0016 29.5 2.4 47 227-275 13-60 (249)
175 PRK14842 undecaprenyl pyrophos 20.5 64 0.0014 29.8 1.8 47 227-275 7-54 (241)
176 PRK14831 undecaprenyl pyrophos 20.4 71 0.0015 29.6 2.1 47 227-275 19-66 (249)
177 cd02168 NMNAT_Nudix Nicotinami 20.3 67 0.0015 28.1 1.9 18 4-26 4-21 (181)
No 1
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=9.4e-103 Score=773.67 Aligned_cols=335 Identities=39% Similarity=0.730 Sum_probs=320.3
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCC--------C
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------P 73 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~--------~ 73 (340)
+.|||||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++ |
T Consensus 44 ~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gp 123 (535)
T PLN02627 44 GPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGP 123 (535)
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999975 6
Q ss_pred ccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCC
Q psy2377 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPL 151 (340)
Q Consensus 74 ~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~ 151 (340)
|+||+|+++|++++++|+++|+||+||||++++++.|+.+.+.+.++.|+|+||++ +.+|.. ...+.++++||++|.
T Consensus 124 y~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l-~~ee~~~~~~~g~~~~iR~k~p~ 202 (535)
T PLN02627 124 YRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATA-SDEEVQAELAKGTPYTYRFRVPK 202 (535)
T ss_pred eeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccC-CHHHHHHHHhCCCCceEEEEcCC
Confidence 99999999999999999999999999999999999998877778889999999999 877532 246788999999997
Q ss_pred CCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEE
Q psy2377 152 YGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (340)
Q Consensus 152 ~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H 231 (340)
++.+.|+|.++|++.+++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|.|+|
T Consensus 203 ~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~H 282 (535)
T PLN02627 203 EGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAH 282 (535)
T ss_pred CCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEE
Confidence 78999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhhcccCcCCCCCccccHHHHH
Q psy2377 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (340)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~ 310 (340)
+|+|++.+|+|||||+|++++.+|+++|+.|+||+|||+.|||+++ +.|+++++|++++|+ ++++++++++||.+||.
T Consensus 283 lpli~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~~F~-l~~v~~s~~~fD~~KL~ 361 (535)
T PLN02627 283 VSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEKFS-IDRINKSGAVFDSTKLK 361 (535)
T ss_pred ccceeCCCCCccccccCCccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHHhCC-HhhCCCcccccCHHHHH
Confidence 9999999999999999999999999999999999999999999874 478999999999999 99999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHhHHHHHHhcCC
Q psy2377 311 WLNNFYIKSYDDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 311 ~~n~~~i~~~~~~~~~~~~~~~~~~~~~ 338 (340)
|+|++||+.++.+++++++.|++.+.|+
T Consensus 362 wlN~~yir~l~~~el~~~~~p~l~~~~~ 389 (535)
T PLN02627 362 WMNGQHLRLLPEEELVKLVGERWKSAGI 389 (535)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998775
No 2
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-100 Score=745.28 Aligned_cols=331 Identities=39% Similarity=0.606 Sum_probs=315.7
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|+++++.+.|+++|+|||++||+ .++||+|++.
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De-~y~QSer~~~ 80 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDR-TFRQSDRFDR 80 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCc-cccHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEEec
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
|.+++++|+++|++|+||||++++++.|+.+.+.|.++.|+|+||++ +.+|.. ...|.++++||+++ ++.+.|.|.
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l-~~~~~~~~~~~g~~~~iR~k~~-~~~~~~~D~ 158 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKL-TEEEKAALEAEGRKPHWRFKLD-DEPISWDDL 158 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccC-CHHHHHhHHhcCCCceEEEecC-CCceEEEEE
Confidence 99999999999999999999999999988877788888999999999 876533 24578899999995 578999999
Q ss_pred cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC
Q psy2377 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 161 i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g 240 (340)
++|.+.+++.+++||||+|+||.|||||||||||++|||||||||+||++|||+|++||+||||++|.|+|+|++++.+|
T Consensus 159 i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g 238 (445)
T PRK12558 159 IRGEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG 238 (445)
T ss_pred eeeEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcC
Q psy2377 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSY 320 (340)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~ 320 (340)
+|||||+|+++|.+|+++||+|+||+|||+.|||++++.++++++||+++|+ ++++++++++||.+||.|+|++||+.+
T Consensus 239 ~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~F~-l~~~~~~~~~fd~~KL~w~N~~~i~~~ 317 (445)
T PRK12558 239 KGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESFD-LSSFSRAPAKFDPEDLERLNARLLHAL 317 (445)
T ss_pred ccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHhCC-HhhCCCccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988778899999999999 999999999999999999999999999
Q ss_pred CHHHHHHhHHHHHHhcC
Q psy2377 321 DDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (340)
+.+++++++.|++.+.+
T Consensus 318 ~~~~l~~~~~~~~~~~~ 334 (445)
T PRK12558 318 PFEAVKDRLAALGIPGE 334 (445)
T ss_pred CHHHHHHHHHHhhcccc
Confidence 99999999999886443
No 3
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.2e-99 Score=745.99 Aligned_cols=332 Identities=45% Similarity=0.782 Sum_probs=318.8
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.+++++.|+++|+||||+||++||+||+|++
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~ 82 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNN 82 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
+|++++++|+++|+||+||||+++|++.|+.+.+.+.++.|+|+||++ +.++. ..+.++++|||+|..+.+.|+|.+
T Consensus 83 ~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~-~~~~~--~~~~~~~iR~k~p~~~~~~~~D~v 159 (513)
T PRK14895 83 LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDK-DPSIY--PTDIKPVIRLKTPREGSITIHDTL 159 (513)
T ss_pred HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhccc-Chhhh--hcCCCeeEEEEcCCCCceEEEeec
Confidence 999999999999999999999999999988777777788999999998 76542 246788999999977889999999
Q ss_pred ceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCc
Q psy2377 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV 241 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~ 241 (340)
+|++++++..++|+||+|+||.||||||++|||++|||||||||+||++|||+|+.++++||++.|.|.|+|+|++.+|.
T Consensus 160 ~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g~ 239 (513)
T PRK14895 160 QGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADGA 239 (513)
T ss_pred ccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCCC
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCC
Q psy2377 242 KISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321 (340)
Q Consensus 242 KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~ 321 (340)
|||||+|+.+|.+|+++|+.|+||+|||+.|||+.++.|+++++|++++|+ ++++++++++||++||.|+|++||+.++
T Consensus 240 KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~F~-~~~v~~s~~~FD~~KL~wlN~~yi~~l~ 318 (513)
T PRK14895 240 KLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDWFN-LDSLGKSPSKLDFAKMNSLNAHYLRMLD 318 (513)
T ss_pred ccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhhCC-HHhCcCCcCcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999987789999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhcC
Q psy2377 322 DKKLLNLIQPIIKKKK 337 (340)
Q Consensus 322 ~~~~~~~~~~~~~~~~ 337 (340)
.+++++.+.||+.+.|
T Consensus 319 ~~el~~~~~~~l~~~~ 334 (513)
T PRK14895 319 NDSLTSKTVEILEQNY 334 (513)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 4
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-99 Score=739.49 Aligned_cols=320 Identities=38% Similarity=0.660 Sum_probs=306.3
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHHHH
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYF 84 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y~ 84 (340)
+|||||||||+|||||+||||+||++||++||+|+|||||||++|+.+++++.|+++|+||||+||+ +|+||+|+++|+
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe-~y~QSeR~~~Y~ 79 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK-LVYQSENLKFHR 79 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC-CeehhccHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999999996 899999999999
Q ss_pred HHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecccee
Q psy2377 85 EIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK 164 (340)
Q Consensus 85 ~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~ 164 (340)
+++++|+++|+||+||||++++++.|+.+.+.|.+++|+|+||++ +.+|. ...+.++++|||+|. +.+.|.|.++|.
T Consensus 80 ~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l-~~~e~-~~~g~~~~iR~k~p~-~~~~f~D~v~G~ 156 (433)
T PRK12410 80 QMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENL-EDDEV-LNCNKPFVVRLKKPN-HTMSFTDAIKGE 156 (433)
T ss_pred HHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCC-CHhHH-HhcCCCeEEEEEcCC-Cceeeeecccee
Confidence 999999999999999999999999988877778888999999999 87753 346788999999984 889999999999
Q ss_pred eeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCC-CceEEecceecCCCcee
Q psy2377 165 ITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTL-PFYGHLPMVIDSNKVKI 243 (340)
Q Consensus 165 ~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~-p~~~H~pll~~~~g~KL 243 (340)
+.+.+.+++||||+|+||+||||||+||||++|||||||||+||++|||+|++||+||||++ |.|+|+|++++.+|+||
T Consensus 157 i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g~KL 236 (433)
T PRK12410 157 VSFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGKKM 236 (433)
T ss_pred EEeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCCCee
Confidence 99999899999999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHH
Q psy2377 244 SKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDK 323 (340)
Q Consensus 244 SKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~ 323 (340)
|||+|+++|.+|+++|+.|+||+|||+.|||+.+ .|+++++|++++|+ ++++++++++||.+||.|+|++||+.++++
T Consensus 237 SKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~~-~e~~~~~eli~~F~-~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~ 314 (433)
T PRK12410 237 SKRDNASSVKWLLEQGFLPSAIANYLILLGNKTP-KEIFTLEEAIEWFD-IEKISKSPAKFDLKKLRFINREHLKMLDDE 314 (433)
T ss_pred ecccChhhHHHHHHCCCCHHHHHHHHHHhCCCCc-ccccCHHHHHHhCC-HhhCCCccccCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999865 78999999999999 999999999999999999999999999999
Q ss_pred HHHHhHH
Q psy2377 324 KLLNLIQ 330 (340)
Q Consensus 324 ~~~~~~~ 330 (340)
++++++.
T Consensus 315 ~l~~~~~ 321 (433)
T PRK12410 315 RLSKLLG 321 (433)
T ss_pred HHHHHHh
Confidence 9999874
No 5
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-97 Score=736.61 Aligned_cols=335 Identities=51% Similarity=0.930 Sum_probs=320.4
Q ss_pred CCceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCC-------C
Q psy2377 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG-------P 73 (340)
Q Consensus 1 m~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~-------~ 73 (340)
|+.|||||||||||+|||||+|||++||++||++||+|||||||||++|++++++++|+++|+||||+||++ |
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 456999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred ccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCC
Q psy2377 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPL 151 (340)
Q Consensus 74 ~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~ 151 (340)
|+||+|+++|++++++|+++|+||+||||+++|++.|+.+.+.|.++.|+|+||++ +.+|.. ...|.++++|||+|.
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~-~~~~~~~~~~~g~~~~iR~k~p~ 160 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDL-TKEEVAARLAAGEPPVIRFKVPD 160 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCC-CHHHHHHHHhCCCCeeEEEEcCC
Confidence 99999999999999999999999999999999999998888888889999999999 876532 246789999999998
Q ss_pred CCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEE
Q psy2377 152 YGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (340)
Q Consensus 152 ~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H 231 (340)
.+.+.|.|.|+|++++++..++|+||+|+||+|||+||+||||++|||||||||+||+++||+|.+++++||++.|.|.|
T Consensus 161 ~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H 240 (476)
T PRK01406 161 EGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAH 240 (476)
T ss_pred CCceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEE
Confidence 77999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHH
Q psy2377 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEW 311 (340)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~ 311 (340)
+|++++.+|.|||||+|+++|++|+++|+.|+|+.+|++.+||+.+..++++.++++++|+ ++.++++++.||++||.|
T Consensus 241 ~pli~~~~g~klSKR~g~~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~e~~~~~~~i~~f~-l~~~~~s~~~fd~~kL~~ 319 (476)
T PRK01406 241 LPLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGWSHGDQEIFSLEELIELFD-LERVSKSPARFDIKKLDW 319 (476)
T ss_pred eeeeeCCCCCcccCcCCccCHHHHHHCCCCHHHHHHHHHHhCCCCCccccCCHHHHHHhcC-hhhCCCCCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999987788999999999999 999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHhHHH-HHHhcC
Q psy2377 312 LNNFYIKSYDDKKLLNLIQP-IIKKKK 337 (340)
Q Consensus 312 ~n~~~i~~~~~~~~~~~~~~-~~~~~~ 337 (340)
+|++||+.++.+++++++.+ ++...+
T Consensus 320 ~N~~~i~~~~~~~l~~~~~~~~~~~~~ 346 (476)
T PRK01406 320 LNGHYIRELDPEELAELLLPWHLEQEG 346 (476)
T ss_pred HHHHHHHhCCHHHHHHHHhHHHhhhcc
Confidence 99999999999999999999 776544
No 6
>KOG1149|consensus
Probab=100.00 E-value=1.3e-97 Score=701.58 Aligned_cols=331 Identities=37% Similarity=0.676 Sum_probs=311.2
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCC--------c
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGP--------F 74 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~--------~ 74 (340)
.|||||||||||+||+|++|||++||++||++||+|||||||||.+|.+++..++|.++|.|+||+|||+| |
T Consensus 33 ~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY 112 (524)
T KOG1149|consen 33 CVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPY 112 (524)
T ss_pred eeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999865 9
Q ss_pred cccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCC
Q psy2377 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLY 152 (340)
Q Consensus 75 ~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~ 152 (340)
.||+|.++|..++++|++.|+||+||||.+++..+|+.+...+..|+||+.|+++ +.+|++ .++|.++++|||.++
T Consensus 113 ~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~l-s~~ei~~~lakg~pf~iRFrl~~- 190 (524)
T KOG1149|consen 113 EQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANL-SDAEIKQKLAKGTPFTIRFRLPK- 190 (524)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhccc-CHHHHHHHHhcCCCeeEEEecCC-
Confidence 9999999999999999999999999999999999999888888899999999999 888754 378999999999986
Q ss_pred CceeEEeccceeeeecCC-CCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEE
Q psy2377 153 GNITWNDLIKGKITISNK-ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~-~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H 231 (340)
....|+|+|+|++..+.. +.+||||+||||.||||||+|||||.|||||||||+||++||++|+.||+||||++|.|+|
T Consensus 191 ~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaH 270 (524)
T KOG1149|consen 191 ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAH 270 (524)
T ss_pred CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceee
Confidence 478899999999988754 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhhcccCcCCCCCccccHHHHH
Q psy2377 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (340)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~ 310 (340)
+||+++++|.|||||+|+..|..|+++|+.|+|+.||++.+||+.. ..+.+|++||+++|+ +++++++++.+|.+||.
T Consensus 271 lpLl~n~d~sKLSKRqgD~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~-i~~ltk~~a~ld~ekL~ 349 (524)
T KOG1149|consen 271 LPLLLNPDGSKLSKRQGDASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFS-IERLTKSNAILDSEKLR 349 (524)
T ss_pred eeeeecCCcchhhhhcCcchHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhc-hhhhcccccccCHHHHH
Confidence 9999999999999999999999999999999999999999999884 468899999999999 99999999999999999
Q ss_pred HHHHHHhhcCC-----HHHHHHhHHHHHHhc
Q psy2377 311 WLNNFYIKSYD-----DKKLLNLIQPIIKKK 336 (340)
Q Consensus 311 ~~n~~~i~~~~-----~~~~~~~~~~~~~~~ 336 (340)
++|+.||+.+. ..+++..+.|.++++
T Consensus 350 ~~Nr~~lqr~~~n~s~l~~lv~~~q~~l~e~ 380 (524)
T KOG1149|consen 350 FLNRLHLQRLISNESKLRELVDKLQPLLKEA 380 (524)
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHh
Confidence 99999998765 445677777777653
No 7
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=2.4e-94 Score=716.42 Aligned_cols=332 Identities=50% Similarity=0.890 Sum_probs=317.4
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|++++++++|+++|+||||+||++||+||+|+++
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEEec
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
|+++|++|+++|+||+||||++++++.|+.+.+.+.++.|+|+||++ +.+|.. ...|.++++|||+|..+.+.|.|.
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l-~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNL-HEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQ 159 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccC-CHHHHHhHHhcCCCceEEEEcCCCCceeEEec
Confidence 99999999999999999999999999988777778889999999999 876532 245788999999997667999999
Q ss_pred cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC
Q psy2377 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 161 i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g 240 (340)
++|.+++++..++|+||+|+||+|||+||++|||++|||||||||+||+++||+|.+++++||++.|.|.|+|++++.+|
T Consensus 160 ~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g 239 (470)
T TIGR00464 160 VRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG 239 (470)
T ss_pred ccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhc
Q psy2377 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS 319 (340)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~ 319 (340)
+|||||+|+++|++|+++|+.|+++.+|++.+||+.+ ..++++.++++++|+ ++.++++++.||++||.|+|++||+.
T Consensus 240 ~kLSKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~-l~~~~~~~~~fd~~kL~~~N~~~l~~ 318 (470)
T TIGR00464 240 KKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFS-LNRVSKSPAKFDWKKLQWLNAHYIKE 318 (470)
T ss_pred ccccccCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcC-cccCCCCCCeecHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875 467899999999999 99999999999999999999999999
Q ss_pred CCHHHHHHhHHHHHHhc
Q psy2377 320 YDDKKLLNLIQPIIKKK 336 (340)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ 336 (340)
++++++++++.|+++++
T Consensus 319 l~~~~l~~~~~~~~~~~ 335 (470)
T TIGR00464 319 LPDEELFELLDPHLKSL 335 (470)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 8
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-92 Score=694.58 Aligned_cols=331 Identities=44% Similarity=0.768 Sum_probs=312.5
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y 83 (340)
|+|||||||||+|||||||||++||++||++||+|++||||||++|+.+++.++|+++|+|||++||++++|||+|++.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCC--CCCCCCceEEEeCC--CCCceeEE
Q psy2377 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP-RYNRIWRPEPGKILPS--IPINRKPVIRFKNP--LYGNITWN 158 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~-~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~--~~~~~~~~ 158 (340)
++++++|+++|+||+|+||+++|+++|+.+.+.+.+| .|++.|+++ +.++.. ...+.++++|||+| ..+. .|.
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L-~~~~~~~~~~~~~~~viR~k~~~~~~~~-~~~ 167 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNL-TLFEKMADLGEGGPAVVRLKIPMAHPGP-VFR 167 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhcc-chHHHHhhcccCCCeEEEEeCCCCCCCC-ccc
Confidence 9999999999999999999999999999888888767 999999998 776522 13478899999998 4444 899
Q ss_pred eccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecC
Q psy2377 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDS 238 (340)
Q Consensus 159 D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~ 238 (340)
|.|+|.+.+.+...+| |+.|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|.|+|+|++.
T Consensus 168 D~v~g~i~~~~~~~~d-v~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~ 246 (472)
T COG0008 168 DLVRGRIVFAPKHPDF-VILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNE 246 (472)
T ss_pred cceeeeEecCccCCcc-eeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecC
Confidence 9999999998877799 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCC--CCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHH
Q psy2377 239 NKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH--GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFY 316 (340)
Q Consensus 239 ~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~ 316 (340)
+|+|||||++++++..++..|+.|++|.++++.+||+. ...+++++++++++|+ ++.++++++.||.+||.|+|.+|
T Consensus 247 ~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd-~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 247 DGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFD-LTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhh-hhhhhcccccccHHHhHhhhHHH
Confidence 99999999999999999999999999999999999976 3467899999999999 99999999999999999999999
Q ss_pred hhcCCHHHHHHhHHHHHHhcCC
Q psy2377 317 IKSYDDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~ 338 (340)
|..++++.+.+.+.+++.+.+.
T Consensus 326 ~~~~p~e~~~~~l~~~~~~~~~ 347 (472)
T COG0008 326 MRVDPVEVVIENLKPHLEEEGA 347 (472)
T ss_pred HHhCCHHHHHHhhhhhhhhhcc
Confidence 9999999999999999887654
No 9
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1.1e-89 Score=642.56 Aligned_cols=292 Identities=31% Similarity=0.484 Sum_probs=270.3
Q ss_pred CCceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccH
Q psy2377 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (340)
Q Consensus 1 m~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~ 80 (340)
|++|||||||||||+|||||+|+||+||++||+++|+|+|||||||++|+.+++++.|+++|+||||+||+++++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEec
Q psy2377 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
+.|++++++|+++|++|+|+||+++|++.+ +.+.+.++.|+|+||++ +.++ ..++++||+++ ++.+.|.|.
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~--~~~~~~~~~y~g~cr~~-~~~~-----~~~~~iRlk~~-~~~~~~~D~ 153 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAA--PAPPDGGGIYPGTCRDL-LHGP-----RNPPAWRLRVP-DAVIAFDDR 153 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHh--hhccCCCCcCCCccccC-Cccc-----cCCceEEEEcC-CCceEEEEe
Confidence 999999999999999999999999998776 33344567899999998 7764 23689999998 478999999
Q ss_pred cceeeeecCC-CCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCC
Q psy2377 161 IKGKITISNK-ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSN 239 (340)
Q Consensus 161 i~G~~~~~~~-~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~ 239 (340)
++|++.++.. .++||||+|+||+|||||||||||++|||||||||+||++|||+|++|+++|||++|.|+|+|++++.+
T Consensus 154 ~~G~~~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~ 233 (299)
T PRK05710 154 LQGRQHQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNAD 233 (299)
T ss_pred cceeEeeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCC
Confidence 9999987765 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCH--HHHHHhhcccCcCCCCCccccH
Q psy2377 240 KVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSI--KQFCYWFNDCKYLSKSPAQFNL 306 (340)
Q Consensus 240 g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~-~~~~~~--~~~~~~f~~~~~~~~~~~~~d~ 306 (340)
|+|||||+++.+|++ .|+.|+ +.+|++.|||+.+. .++.++ ++++++|+ ++++++++++|..
T Consensus 234 g~kLSKr~~~~~i~~---~g~~p~-l~~~l~~lG~~~~~~~~~~~~~~~~~i~~f~-~~~~~~~~~~~~~ 298 (299)
T PRK05710 234 GQKLSKQNGAPALDA---AGPLPV-LAAALRFLGQPPPAADASVEELLAQAVAHWD-LTRLPRQAEINPA 298 (299)
T ss_pred CCcccccCCccchhh---cCcCHH-HHHHHHHcCCCCCccccccccCHHHHHHhCC-HhhCCcCCccCCC
Confidence 999999999999987 799999 99999999998743 455555 79999999 9999999998753
No 10
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=4.7e-91 Score=661.83 Aligned_cols=307 Identities=45% Similarity=0.775 Sum_probs=273.5
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.+++.++|+++|+||||+||.+|++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcC--CCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEE
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFG--EKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWN 158 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~--~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~~~~~~~ 158 (340)
|++++++|+++|+||+||||+++|++.++.+...+ ..+.|+++|+++ +.+|.. ...+.++++||+++....+.|.
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~-~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCREL-TEEEMRAGLAKGGPAVIRLKVPMESPIAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCH-HHHHHHHHHHTTTSEEEEE-SSSTCCEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhh-hHHHHHhhhccCCceeeeeecccccccccc
Confidence 99999999999999999999999999887765544 678999999998 644321 1357889999999976568999
Q ss_pred eccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecC
Q psy2377 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDS 238 (340)
Q Consensus 159 D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~ 238 (340)
|.+.|.+.+...+++||||+|+||+||||||+||||++|||||||||.||++||++|++|+++||+++|.|+|+|++++.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999999987788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCCCCC--hHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHHHhhcccCcCCCCCccccHHHHHH
Q psy2377 239 NKVKISKRKEATD--IMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEW 311 (340)
Q Consensus 239 ~g~KLSKR~g~~~--l~~l~~~G~~p~al~~~l~~lG~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~ 311 (340)
+|+|||||+++.+ +..+++.|++|+++.+||+++||++ ...++++.++++++|+ ++.++++++.||.+||.|
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~-~~~~~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFD-LSKISKSPAVFDRKKLDW 314 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC--GGGBHSSHEEHHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhh-HhhccCchHHhCHHHhCC
Confidence 9999999999988 8999999999999999999999986 4578999999999999 999999999999999988
No 11
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=8.9e-86 Score=609.91 Aligned_cols=270 Identities=32% Similarity=0.468 Sum_probs=249.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y 83 (340)
++|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++++++|+++|+||||+||+++++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccce
Q psy2377 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G 163 (340)
++++++|+++|+||+||||+++|++.+ .+.++.|+|+||+. ... ..+.++++||+++. +.+.|.|.++|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~-----~~~~~~y~~~cr~~-~~~----~~~~~~~~Rlk~~~-~~~~~~D~~~g 149 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAA-----GDGGGIYPGTCRNG-LLG----RPARPAAWRLRVPD-GVIAFDDRLQG 149 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHh-----cCCCCCCCchhhcc-ccc----ccCCCceEEEecCC-CCceEEEeeee
Confidence 999999999999999999999998765 23456899999974 321 24677899999984 78999999999
Q ss_pred eeeec-CCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCce
Q psy2377 164 KITIS-NKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242 (340)
Q Consensus 164 ~~~~~-~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~K 242 (340)
.+.+. +..++||||+|+||+|||||||||||++|||||||||+||++|||+|++|+++|||+.|.|+|+|++++.+|+|
T Consensus 150 ~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~k 229 (272)
T TIGR03838 150 PQQQDLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEK 229 (272)
T ss_pred EEEecCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCCCe
Confidence 99887 77889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHH
Q psy2377 243 ISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFC 288 (340)
Q Consensus 243 LSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~-~~~~~~~~~~~ 288 (340)
||||+++.+|+++ -+++++.++|+.+||+++ +.|++|++||+
T Consensus 230 LSKR~~~~~i~~~----~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~ 272 (272)
T TIGR03838 230 LSKQNGAPALDLS----HPLPALLAALRFLGLPPPPELAAASPAELL 272 (272)
T ss_pred eeccCCccchhcC----CcHHHHHHHHHHcCCCCCcccccCCHHHhC
Confidence 9999999999875 367899999999999874 56789999874
No 12
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=6.7e-75 Score=524.24 Aligned_cols=228 Identities=46% Similarity=0.810 Sum_probs=222.1
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
+|+|||||||||+|||||+|+|++||++||+++|+|++||||||++|+.++++++|+++|+||||+||+++++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999887
Q ss_pred eeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCce
Q psy2377 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~K 242 (340)
|+||||||+||||++|||||||||+||++|||+|++++++||++.|.|.|+|++++.+|+|
T Consensus 93 -------------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~K 153 (230)
T cd00418 93 -------------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTK 153 (230)
T ss_pred -------------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhh
Q psy2377 243 ISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 243 LSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~ 318 (340)
||||+++.+|++++++|++|++|++|++.|||+++ +.+++++++++++|+ ++++++++++||++||.|+|++||+
T Consensus 154 LSKr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~-~~~~~~~~~~~d~~kL~~~N~~~l~ 229 (230)
T cd00418 154 LSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFS-VERVNSADATFDWAKLEWLNREYIR 229 (230)
T ss_pred ccCcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcC-HhhCCCCCcccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999874 368899999999999 9999999999999999999999997
No 13
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-74 Score=575.41 Aligned_cols=281 Identities=25% Similarity=0.376 Sum_probs=235.4
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||||+|++||++||+++|.|+|||||||++|+.++|+++|+++|+|||++||+++++||+|++
T Consensus 51 ~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSdr~d 130 (601)
T PTZ00402 51 GKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSDYMD 130 (601)
T ss_pred CeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccccHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEE-EeCCC--CCceeEE
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIR-FKNPL--YGNITWN 158 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~R-l~~~~--~~~~~~~ 158 (340)
.|+++|++|+++|+||.|+|+++++++.+. ..|+++||++ +++|.. ..+| ++.+. ++.
T Consensus 131 ~y~e~a~~Li~~G~AY~c~cs~eei~~~r~--------~g~p~~~R~~-s~ee~l------~~~~~m~~g~~~~~~---- 191 (601)
T PTZ00402 131 LMYEKAEELIKKGLAYCDKTPREEMQKCRF--------DGVPTKYRDI-SVEETK------RLWNEMKKGSAEGQE---- 191 (601)
T ss_pred HHHHHHHHHHHcCCEEEecCCHHHHHHHHh--------CCCCCCCCCC-CHHHHH------HHHHhccccccCCCc----
Confidence 999999999999999999999999976542 2489999998 877521 0111 11110 111
Q ss_pred eccceeee--ecCCCCCCeEEEecC------------CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCC
Q psy2377 159 DLIKGKIT--ISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV 224 (340)
Q Consensus 159 D~i~G~~~--~~~~~~~DfVl~R~d------------G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~ 224 (340)
+.+++++. ..+.+++||||+|.+ |+|||+|||||||++|||||||||.||+++||+|.+|+++|||
T Consensus 192 ~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~ 271 (601)
T PTZ00402 192 TCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGI 271 (601)
T ss_pred eEEEEecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCC
Confidence 22233333 335578999999964 9999999999999999999999999999999999999999999
Q ss_pred CCCceEEecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHH
Q psy2377 225 TLPFYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFC 288 (340)
Q Consensus 225 ~~p~~~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~ 288 (340)
++|.|+|+|+ +|.+|+|||||++. +||+.|+++|++|++|++|+..
T Consensus 272 ~~P~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~----------------- 333 (601)
T PTZ00402 272 RKPIVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQE----------------- 333 (601)
T ss_pred CCceEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHH-----------------
Confidence 9999999996 69999999999975 2445555555555555555554
Q ss_pred HhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHH
Q psy2377 289 YWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKL 325 (340)
Q Consensus 289 ~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~ 325 (340)
..++++++.||+++|.++|+++|++..++.+
T Consensus 334 ------~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~m 364 (601)
T PTZ00402 334 ------QGMSKTVNFMEWSKLWYFNTQILDPSVPRYT 364 (601)
T ss_pred ------hCCCCCCcccCHHHHHHHHHHHHhhcCCceE
Confidence 4466778999999999999999999887653
No 14
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=5.3e-74 Score=568.19 Aligned_cols=275 Identities=24% Similarity=0.293 Sum_probs=241.5
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||||+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~-~~~qSdr~~ 88 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS-VSFTSDYFE 88 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC-CccccccHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999996 789999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~---------~~~~~~~~~Rl~~~~~ 152 (340)
.|+++|++|+++|+||+|+||+++|++.|.. .++++||++ +.+|.. ...+.++++|++.
T Consensus 89 ~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~--------~~~~~~R~~-s~ee~l~~~~~m~~G~~~~~~~~lR~K~--- 156 (523)
T PLN03233 89 PIRCYAIILIEEGLAYMDDTPQEEMKKERAD--------RAESKHRNQ-SPEEALEMFKEMCSGKEEGGAWCLRAKI--- 156 (523)
T ss_pred HHHHHHHHHHHcCCeEecCCCHHHHHHHHhh--------hccCccccC-CHHHHHHHHHHHhcccccCCCeEEEEeC---
Confidence 9999999999999999999999999877642 467899998 877521 0123455666664
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecCC------------CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRADG------------IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG------------~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
++.+.+.+++||||+|+|| +|||+|||||||++|||||||||.||++|||+|.+|++
T Consensus 157 -----------d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~ 225 (523)
T PLN03233 157 -----------DMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQK 225 (523)
T ss_pred -----------cccCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHH
Confidence 3445677899999999995 79999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEecceecCCCceecccC-------CCC---------ChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCH
Q psy2377 221 ALGVTLPFYGHLPMVIDSNKVKISKRK-------EAT---------DIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSI 284 (340)
Q Consensus 221 aLg~~~p~~~H~pll~~~~g~KLSKR~-------g~~---------~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~ 284 (340)
+||++.|.| |.+..++..|.|||||+ |.+ ||++||++|++|+||++|++.+|++..
T Consensus 226 aLg~~~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~------- 297 (523)
T PLN03233 226 ALGLRRPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRR------- 297 (523)
T ss_pred HhCCCCCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCC-------
Confidence 999999998 55888899999999996 443 799999999999999999999998653
Q ss_pred HHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHH
Q psy2377 285 KQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (340)
Q Consensus 285 ~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~ 324 (340)
...+++++|++.|++.|++.+++.
T Consensus 298 ----------------~~~i~~~~l~~~nR~~ld~~a~R~ 321 (523)
T PLN03233 298 ----------------VVNLDWAKFWAENKKEIDKRAKRF 321 (523)
T ss_pred ----------------CceecHHHHHHHHHHHhcccCCce
Confidence 245677777777777777766654
No 15
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=4.2e-74 Score=569.62 Aligned_cols=300 Identities=22% Similarity=0.335 Sum_probs=264.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y 83 (340)
|+|||||||||+|||||||+|++||++||+++|+|+|||||||++|+.++++++|+++|+|||++||+++++||+|++.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC-----C----CCCCceEEEeCCCC-C
Q psy2377 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI-----P----INRKPVIRFKNPLY-G 153 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~-----~----~~~~~~~Rl~~~~~-~ 153 (340)
+++|++|+++|+||+|+||++++++.|+.+ ..+.|+++||++ +++|... . .+.++++|+|.+.. .
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~----~~~g~~~~~R~~-s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~ 155 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTL----TDPGKNSPYRDR-SIEENLALFEKMRDGKFKEGKAILRAKIDMASP 155 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhc----ccCCCCCcccCC-CHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCC
Confidence 999999999999999999999999887532 235799999999 8876310 1 12368999999742 3
Q ss_pred ceeEEeccceeeeecCCCC--CCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCC-CC---
Q psy2377 154 NITWNDLIKGKITISNKEL--DDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LP--- 227 (340)
Q Consensus 154 ~~~~~D~i~G~~~~~~~~~--~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~-~p--- 227 (340)
...+.|.|.|.+.+.+... ++++ ++|||+|||+|||++|||||||||.||++||+.|.|+++++++. .|
T Consensus 156 n~~~rD~V~~Ri~~~~h~~~gdk~~-----iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~ 230 (522)
T TIGR00440 156 FPVMRDPVAYRIKFAPHHQTGTKWC-----IYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQY 230 (522)
T ss_pred CceEeeeeEEEEecCCCCCCCCCee-----EEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceE
Confidence 5778888888887654432 3444 39999999999999999999999999999999999999999987 68
Q ss_pred ceEEecceecCCCceecccCCCC----------------ChHHHHHcCCCHHHHHHHHHHhCCCCCC--ccccCHHHHHH
Q psy2377 228 FYGHLPMVIDSNKVKISKRKEAT----------------DIMYYKKKGFLPEAILNYLARLGWSHGN--EEIFSIKQFCY 289 (340)
Q Consensus 228 ~~~H~pll~~~~g~KLSKR~g~~----------------~l~~l~~~G~~p~al~~~l~~lG~~~~~--~~~~~~~~~~~ 289 (340)
.|+|++ .+|+|||||++.. ||++||++|++|+||++||+.+||+..+ .++.+++++++
T Consensus 231 ~F~rln----~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r 306 (522)
T TIGR00440 231 EFSRLN----LEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIR 306 (522)
T ss_pred EEEEEC----CCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHH
Confidence 788854 4899999999763 8999999999999999999999999754 36789999999
Q ss_pred hhcccCcCCCCCccccHHHH--HHHHHHH-hh
Q psy2377 290 WFNDCKYLSKSPAQFNLKKL--EWLNNFY-IK 318 (340)
Q Consensus 290 ~f~~~~~~~~~~~~~d~~kl--~~~n~~~-i~ 318 (340)
.|. .+.+++.+++||+.|| .++|..+ +.
T Consensus 307 ~f~-~~~~~r~~av~d~~kl~i~~~~~~~~~~ 337 (522)
T TIGR00440 307 EDL-NENAPRAMAVIDPVEVVIENLSDEYELA 337 (522)
T ss_pred Hhh-hhcCcccccccccceEEEecCCCCceEE
Confidence 999 9999999999999999 6777666 54
No 16
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.8e-72 Score=556.55 Aligned_cols=277 Identities=25% Similarity=0.372 Sum_probs=240.0
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||||+|++||++||+++|+|+|||||||++|+.++++++|+++|+|||+.||+++++||+|++
T Consensus 28 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~~d~~~~~qS~r~~ 107 (554)
T PRK05347 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSGELRYASDYFD 107 (554)
T ss_pred CceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCCCCCCceeeecCHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC-----CCC----CCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI-----PIN----RKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~-----~~~----~~~~~Rl~~~~~ 152 (340)
.|+++|++|+++|+||+|+||+++|++.|..+... .++++||++ +.+|... .+| .+.++|++.
T Consensus 108 ~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~----g~~~~~R~~-s~eenl~~~~~m~~G~~~~g~~vlR~Ki--- 179 (554)
T PRK05347 108 QLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEP----GKNSPYRDR-SVEENLDLFERMRAGEFPEGSAVLRAKI--- 179 (554)
T ss_pred HHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhc----CCCCCccCC-CHHHHHHHHHHHHCCCCCCCcEEEEEEe---
Confidence 99999999999999999999999999888765443 468999999 8876210 112 233344433
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEec-------CC-----CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRA-------DG-----IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------dG-----~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
++..++..++|+||+|+ +| +|||+|||+|||++|||||||||.||++|||+|.++++
T Consensus 180 -----------d~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~ 248 (554)
T PRK05347 180 -----------DMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLD 248 (554)
T ss_pred -----------eccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHH
Confidence 12334567899999999 58 99999999999999999999999999999999999999
Q ss_pred HhCCC-CC---ceEEecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCcc
Q psy2377 221 ALGVT-LP---FYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEE 280 (340)
Q Consensus 221 aLg~~-~p---~~~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~ 280 (340)
+||+. .| .|+|++ .+|+|||||++. .||++|+++|++|+||++|++.+||+..
T Consensus 249 alg~~~~P~~~~F~rln----~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~--- 321 (554)
T PRK05347 249 NLPIPPHPRQYEFSRLN----LTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQ--- 321 (554)
T ss_pred HcCCCCCCceEEEEEEC----CCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC---
Confidence 99964 68 789974 479999999954 3899999999999999999999998753
Q ss_pred ccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHH
Q psy2377 281 IFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (340)
Q Consensus 281 ~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~ 324 (340)
...+++++|+++|+++|++.+++.
T Consensus 322 --------------------~~~i~~~~L~~~nRk~ld~~a~R~ 345 (554)
T PRK05347 322 --------------------DSVIDMSMLESCIREDLNENAPRA 345 (554)
T ss_pred --------------------CCeecHHHHHHHHHHHhccCCCce
Confidence 256678888888888888877664
No 17
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=1.1e-71 Score=568.62 Aligned_cols=294 Identities=23% Similarity=0.353 Sum_probs=263.8
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||||+|++||++||+++|.|+|||||||++|+.++|+++|+++|+|||++|++ +++||+|++
T Consensus 263 g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~-~~~qSd~f~ 341 (788)
T PLN02859 263 GKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK-ITYTSDYFQ 341 (788)
T ss_pred CceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC-cccccHhHH
Confidence 4599999999999999999999999999999999999999999999999999999999999999999986 899999998
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCC-
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPL- 151 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~---------~~~~~~~~~Rl~~~~- 151 (340)
.++++|.+|+++|+||+|+||+++|+..|+. ..+++||++ +.+|.. ...+.++++|+|.+.
T Consensus 342 ~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~--------~~~sp~Rd~-s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~ 412 (788)
T PLN02859 342 ELYELAVELIRRGHAYVDHQTPEEIKEYREK--------KMNSPWRDR-PIEESLKLFEDMRRGLIEEGKATLRMKQDMQ 412 (788)
T ss_pred HHHHHHHHHHHcCCeEeccCCHHHHHHHHhh--------hccCCCCCC-ChHHhhhhhHHHHhchhccCCeEEEEeccCC
Confidence 7778999999999999999999999988753 235678888 776521 112236899999974
Q ss_pred CCceeEEeccceeeeecCC--CCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCce
Q psy2377 152 YGNITWNDLIKGKITISNK--ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFY 229 (340)
Q Consensus 152 ~~~~~~~D~i~G~~~~~~~--~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~ 229 (340)
.+...+.|.|.|.+.+.+. ..+|++| +|||+|||+|||++|||||||||.||++|+|+|.|||++|||..|.+
T Consensus 413 ~~n~~~rD~V~~RI~~~~h~rtgdk~~i-----yPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~~P~~ 487 (788)
T PLN02859 413 NDNFNMYDLIAYRIKFTPHPHAGDKWCI-----YPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYV 487 (788)
T ss_pred CCCceeeeceeEEEeccCCCccCCCeEE-----EecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCCCCcE
Confidence 4678999999999987654 3478887 99999999999999999999999999999999999999999999999
Q ss_pred EEecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcc
Q psy2377 230 GHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFND 293 (340)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~ 293 (340)
+|.| .+|.+|+|||||++. .||++||++||+|+||++|++.+||+..+.|++++++| +.|+
T Consensus 488 ~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~L-e~~~- 564 (788)
T PLN02859 488 WEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRL-EHHI- 564 (788)
T ss_pred Eeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHH-HhhC-
Confidence 9999 569999999999964 48999999999999999999999999877778999888 9999
Q ss_pred cCcCCCCC----ccccHHHHHHHH
Q psy2377 294 CKYLSKSP----AQFNLKKLEWLN 313 (340)
Q Consensus 294 ~~~~~~~~----~~~d~~kl~~~n 313 (340)
++.+++++ +++|+.|+...|
T Consensus 565 r~~l~~~a~R~maV~dp~kv~i~n 588 (788)
T PLN02859 565 REELNKTAPRTMVVLHPLKVVITN 588 (788)
T ss_pred HHhhCCcCcchheecCCeEEEEec
Confidence 99998776 699999986655
No 18
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.3e-71 Score=551.84 Aligned_cols=275 Identities=32% Similarity=0.490 Sum_probs=243.3
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCcc--ccchHHHHHHHHHHHHHcCCCCCCCCcccccc
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDI--NRSTLSATQTIIDGMKWLGLNYDEGPFYQTKR 79 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~--~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~ 79 (340)
++|+|||||||||+|||||+|+|++||++||.++|+|++||||||+ +|+.+++.++|+++|+|||++||+ +++||+|
T Consensus 100 g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~-~~~qSdr 178 (567)
T PRK04156 100 GKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE-VVIQSDR 178 (567)
T ss_pred CeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC-ccCcccC
Confidence 3599999999999999999999999999999999999999999999 999999999999999999999996 7999999
Q ss_pred HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC---------CCCCCceEEEeCC
Q psy2377 80 INRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI---------PINRKPVIRFKNP 150 (340)
Q Consensus 80 ~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~---------~~~~~~~~Rl~~~ 150 (340)
++.|+++|++|+++|+||+|+||++++++.+. ..++++||++ +.+|... ..+.++++|++++
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~--------~g~~~~~R~~-~~ee~l~~~e~m~~G~~~~g~~vlR~k~d 249 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRD--------AGKPCPHRDK-SPEENLELWEKMLDGEYKEGEAVVRVKTD 249 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHh--------cCCCCCCcCC-CHHHHHHHHHHhhcCccccCCeEEEEECc
Confidence 99999999999999999999999999976653 2478999998 8765210 1123578899874
Q ss_pred CCCceeEEeccceeeeecCCCCCCeEEEecC---------C---CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHH
Q psy2377 151 LYGNITWNDLIKGKITISNKELDDLVIVRAD---------G---IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINI 218 (340)
Q Consensus 151 ~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~d---------G---~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l 218 (340)
. ...+.+++|||++|.+ + +|||+||++|||++|||||||||.||++||++|.++
T Consensus 250 ~--------------~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l 315 (567)
T PRK04156 250 L--------------EHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYI 315 (567)
T ss_pred c--------------cCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHH
Confidence 2 2345678999999973 3 899999999999999999999999999999999999
Q ss_pred HHHhCCCCCceEEecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCcccc
Q psy2377 219 LKALGVTLPFYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIF 282 (340)
Q Consensus 219 ~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~ 282 (340)
+++|||+.|.|.|+|+| +.+|+|||||++. .||+.|+++|++|+||++||+.+||+.
T Consensus 316 ~~~Lg~~~P~~~H~~~L-~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~------ 388 (567)
T PRK04156 316 YDYFGWEYPETIHYGRL-KIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKE------ 388 (567)
T ss_pred HHHcCCCCceEEEccee-cCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCC------
Confidence 99999999999999998 4689999999932 589999999999999999999999864
Q ss_pred CHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHH
Q psy2377 283 SIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (340)
Q Consensus 283 ~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~ 324 (340)
+++.|++++|.++|+++|++.+++.
T Consensus 389 -----------------~~~~~~~~~L~~~nr~~ld~~a~R~ 413 (567)
T PRK04156 389 -----------------TDATISWENLYAINRKLIDPIANRY 413 (567)
T ss_pred -----------------CCcccCHHHHHHHHHHHHhccCCce
Confidence 3467888888888888888877665
No 19
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=5.1e-71 Score=552.27 Aligned_cols=276 Identities=30% Similarity=0.477 Sum_probs=246.6
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
+.|+|||||||||+|||||||+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|++
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~-~~~qSd~~~ 170 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDE-VVYQSDRIE 170 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCc-cccccccHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999996 789999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~---------~~~~~~~~~Rl~~~~~ 152 (340)
.|++++++|+++|+||+|+||++++++.|. ..|+|+||++ +.+|.. ...+.++++|+|.+
T Consensus 171 ~y~~~a~~Li~~G~AY~C~cs~eei~~~r~--------~g~~~~cR~~-s~eenl~~fe~m~~g~~~~~~~~lR~K~d-- 239 (560)
T TIGR00463 171 EYYDYCRKLIEMGKAYVCDCPPEEFRELRN--------DGVACACRDR-SVEENLEIWEEMLNGTEEGGKVVVRAKTD-- 239 (560)
T ss_pred HHHHHHHHHHHcCCceeecCCHHHHHHHHh--------CCCCCCccCC-CHHHHHHHHHHHhcccccCCCeEEEEECC--
Confidence 999999999999999999999999987753 2489999999 876521 12356789999874
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecCC------------CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRADG------------IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG------------~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
+...+..++|+|++|.++ +|||+|||+|||++|||||||||.||++||++|++++.
T Consensus 240 ------------~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~ 307 (560)
T TIGR00463 240 ------------YKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYM 307 (560)
T ss_pred ------------CcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHH
Confidence 234567889999999964 89999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEecceecCCCceecccCC----------------CCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCH
Q psy2377 221 ALGVTLPFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSI 284 (340)
Q Consensus 221 aLg~~~p~~~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~ 284 (340)
+|||+.|.|.|+|++.+..|.|||||.. ..||+.|+++|++|+||++|++.+||+..
T Consensus 308 ~lg~~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~------- 380 (560)
T TIGR00463 308 YFGWELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRN------- 380 (560)
T ss_pred HcCCCCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCC-------
Confidence 9999999999999999999999998762 25899999999999999999999998653
Q ss_pred HHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHH
Q psy2377 285 KQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (340)
Q Consensus 285 ~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~ 324 (340)
.+.+++++|++.|++.|++.+++.
T Consensus 381 ----------------~~~i~~~~l~~~nr~~id~~a~R~ 404 (560)
T TIGR00463 381 ----------------DVNLSWKNIYAFNKKIIDPIARRY 404 (560)
T ss_pred ----------------CceeeHHHHHHHHHHHhCcCCCce
Confidence 256777888888888888777654
No 20
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.1e-70 Score=498.57 Aligned_cols=229 Identities=51% Similarity=0.917 Sum_probs=221.3
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCC--------CCc
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE--------GPF 74 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~--------~~~ 74 (340)
+|+|||||||||+|||||+|+|++||++||+++|+|++||||||++|+.+++.+.|+++|+||||+||+ +++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 479999999999999999999999999999999999999999999999999999999999999999998 489
Q ss_pred cccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q psy2377 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGN 154 (340)
Q Consensus 75 ~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~ 154 (340)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999998665
Q ss_pred eeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecc
Q psy2377 155 ITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (340)
Q Consensus 155 ~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pl 234 (340)
||+|||+||+||||++|||||||||+||+++|++|++++++||++.|.|.|+|+
T Consensus 101 --------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pl 154 (239)
T cd00808 101 --------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPL 154 (239)
T ss_pred --------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecc
Confidence 689999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhhcccCcCCCCCccccHHHHHHHH
Q psy2377 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLN 313 (340)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n 313 (340)
+++.+|+|||||+++.+|++|+++|++|++|++|++.+||+... .++++++|++++|+ ++.+++++++||++||.++|
T Consensus 155 l~~~~g~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~-~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 155 ILNPDGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFD-LERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred ccCCCCCcccCCCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCC-HhhCCcCcCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998754 57899999999999 99999999999999999999
Q ss_pred HHHhh
Q psy2377 314 NFYIK 318 (340)
Q Consensus 314 ~~~i~ 318 (340)
+++|+
T Consensus 234 ~~~l~ 238 (239)
T cd00808 234 GQYIR 238 (239)
T ss_pred HHHhh
Confidence 99996
No 21
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=6.7e-70 Score=561.91 Aligned_cols=276 Identities=24% Similarity=0.325 Sum_probs=243.7
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||||+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++
T Consensus 212 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~-~~~qS~r~~ 290 (722)
T PLN02907 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDA-VTYTSDYFP 290 (722)
T ss_pred CceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCC-cccccccHH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999997 789999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~---------~~~~~~~~~Rl~~~~~ 152 (340)
.|+++|++|+++|+||+|+|+++++++.+. ..|+++||++ +.+|.. ...+.++++|+|.+
T Consensus 291 ~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~--------~~~~~~~R~~-~~ee~~~~~~~m~~g~~~~~~~~lR~k~d-- 359 (722)
T PLN02907 291 QLMEMAEKLIKEGKAYVDDTPREQMRKERM--------DGIESKCRNN-SVEENLRLWKEMIAGSERGLQCCVRGKLD-- 359 (722)
T ss_pred HHHHHHHHHHHcCCeeecCCCHHHHHHHHh--------cCCCCCccCC-CHHHHHHHHHHHhcccccCCCeEEEEEcc--
Confidence 999999999999999999999999876643 1699999999 887621 12456788999874
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecCC------------CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRADG------------IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG------------~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
+..++.+++|+|+.|++| +|||+|||+|||++|||||||||.||++|||+|.+|++
T Consensus 360 ------------~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~ 427 (722)
T PLN02907 360 ------------MQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILE 427 (722)
T ss_pred ------------cCCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHH
Confidence 234567889999999997 99999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEecceecCCCceecccC-------CC---------CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCH
Q psy2377 221 ALGVTLPFYGHLPMVIDSNKVKISKRK-------EA---------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSI 284 (340)
Q Consensus 221 aLg~~~p~~~H~pll~~~~g~KLSKR~-------g~---------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~ 284 (340)
+||++.|.+.|.+. ++.+|.|||||+ |. .|++++|++|++|++|++|+..+|++
T Consensus 428 ~lg~~~p~~~~f~~-l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s--------- 497 (722)
T PLN02907 428 DMGLRKVHIWEFSR-LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGAS--------- 497 (722)
T ss_pred HcCCCCCeeEEEEE-EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCC---------
Confidence 99999884333332 266799999999 43 37999999999999999999988864
Q ss_pred HHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHH
Q psy2377 285 KQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKL 325 (340)
Q Consensus 285 ~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~ 325 (340)
++++.||++||.++|+++|++.+++.+
T Consensus 498 --------------~~~~~~~~~~l~~~nr~~id~~a~R~~ 524 (722)
T PLN02907 498 --------------KNLNLMEWDKLWTINKKIIDPVCPRHT 524 (722)
T ss_pred --------------cCCccccHHHHHHHHHHHhccCCCcee
Confidence 345789999999999999999887753
No 22
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=5.8e-69 Score=553.79 Aligned_cols=253 Identities=27% Similarity=0.413 Sum_probs=224.4
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||+|+|++||++||+++|.|+|||||||++|+.++|+++|+++|+|||++||+++++||+|++
T Consensus 30 ~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~~~~~qS~~~~ 109 (771)
T PRK14703 30 PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHLYYASDYFE 109 (771)
T ss_pred CceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCCCceEeecCHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC-----CCC----CCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI-----PIN----RKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~-----~~~----~~~~~Rl~~~~~ 152 (340)
.|+++|++|+++|+||+|+||++++++.|..+.. ..|+++||++ +.+|... ..| .++++|+|.
T Consensus 110 ~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~----~g~~~~~R~~-s~ee~l~~~~~m~~G~~~~g~~vlR~Ki--- 181 (771)
T PRK14703 110 RMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTE----PGTPSPYRDR-SVEENLDLFRRMRAGEFPDGAHVLRAKI--- 181 (771)
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhh----cCCCCCCCCC-CHHHHHHHHHHHhCCCCcCCCeEEEEEe---
Confidence 9999999999999999999999999988865432 4678899998 8776210 112 245677765
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecC------------CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~d------------G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
++..++..++|+|++|++ ++|||+|||+|||++|||||||||.||++||++|.|||+
T Consensus 182 -----------d~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~ 250 (771)
T PRK14703 182 -----------DMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLD 250 (771)
T ss_pred -----------eccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHH
Confidence 345567788999999984 489999999999999999999999999999999999999
Q ss_pred HhCCCC--C---ceEEecceecCCCceecccC-------CC---------CChHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy2377 221 ALGVTL--P---FYGHLPMVIDSNKVKISKRK-------EA---------TDIMYYKKKGFLPEAILNYLARLGWSHG 277 (340)
Q Consensus 221 aLg~~~--p---~~~H~pll~~~~g~KLSKR~-------g~---------~~l~~l~~~G~~p~al~~~l~~lG~~~~ 277 (340)
+||+.. | .|+|+|+ .|.|||||+ |. .||.+||++||+|+||++||+.+||+..
T Consensus 251 ~l~~~~~~P~~~~f~rl~l----~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~ 324 (771)
T PRK14703 251 HLGPWPPRPRQYEFARLAL----GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKT 324 (771)
T ss_pred HhCCCCCCcceeEEEEecc----CCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCcc
Confidence 996543 5 7999999 488999999 43 3799999999999999999999999764
No 23
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.9e-66 Score=469.44 Aligned_cols=218 Identities=28% Similarity=0.446 Sum_probs=198.2
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
+|+|||||||||+|||||+|+|++||++||+++|+|++||||||++|+.+++++.|+++|+||||+|| ++++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD-~~~~QS~r~~~ 79 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPY-KVTYASDYFDQ 79 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCC-CceecccCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
|++++++|+++|++|+ .|+. +
T Consensus 80 Y~~~~~~L~~~g~aY~--------------------------~~~~-----------~---------------------- 100 (238)
T cd00807 80 LYEYAEQLIKKGKAYV--------------------------HHRT-----------G---------------------- 100 (238)
T ss_pred HHHHHHHHHHcCCeec--------------------------CCCC-----------C----------------------
Confidence 9999999999999997 1111 0
Q ss_pred eeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCc---eEEecceecCC
Q psy2377 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPF---YGHLPMVIDSN 239 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~---~~H~pll~~~~ 239 (340)
.++++ +|||||||||||++|||||||||+||++|||+|++|+++||+++|. |+|+ +.+
T Consensus 101 ----------~~~~i-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hl----n~~ 161 (238)
T cd00807 101 ----------DKWCI-----YPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRL----NLT 161 (238)
T ss_pred ----------CCEEE-----EeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEE----CCC
Confidence 12222 4999999999999999999999999999999999999999999995 6775 789
Q ss_pred CceecccCCCC----------------ChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCcc
Q psy2377 240 KVKISKRKEAT----------------DIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQ 303 (340)
Q Consensus 240 g~KLSKR~g~~----------------~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 303 (340)
|+|||||+++. ++..|++.|+.|+||++|++.+||+ ++++.
T Consensus 162 g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s-----------------------~~~~~ 218 (238)
T cd00807 162 YTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVS-----------------------KADST 218 (238)
T ss_pred CCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCC-----------------------CCCcc
Confidence 99999999642 5889999999999999999999974 44689
Q ss_pred ccHHHHHHHHHHHhhcCCH
Q psy2377 304 FNLKKLEWLNNFYIKSYDD 322 (340)
Q Consensus 304 ~d~~kl~~~n~~~i~~~~~ 322 (340)
||++||.++|+++|++.++
T Consensus 219 ~~~~~l~~~nr~~id~~~~ 237 (238)
T cd00807 219 IDWDKLEACVRKDLNPTAP 237 (238)
T ss_pred cCHHHHHHHHHHHhccCCC
Confidence 9999999999999998764
No 24
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.6e-66 Score=511.86 Aligned_cols=284 Identities=20% Similarity=0.269 Sum_probs=236.5
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||||||||+|||||||+|++||++||+++|.|+|||||||++|+.++++++|+++|+|||++||+ +++||+|++
T Consensus 50 gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~-~~~qS~y~~ 128 (574)
T PTZ00437 50 GKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDW-VTFSSDYFD 128 (574)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC-CCcCchhHH
Confidence 3599999999999999999999999999999999999999999999999999999999999999999997 679999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--------C-CCCCCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILP--------S-IPINRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~--------~-~~~~~~~~~Rl~~~~~ 152 (340)
.|+++|++|+++|+||+|+||+++|++.|.. ..+++||++ +.+|. + ...+...++|+|.+-.
T Consensus 129 ~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~--------~~~~~~R~~-~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~ 199 (574)
T PTZ00437 129 QLHEFAVQLIKDGKAYVDHSTPDELKQQREQ--------REDSPWRNR-SVEENLLLFEHMRQGRYAEGEATLRVKADMK 199 (574)
T ss_pred HHHHHHHHHHHcCCEEEcCCCHHHHHHHhhc--------ccCCccccC-CHHHHHHHHHHHhhcccccCCeEEEEeCcCC
Confidence 9999999999999999999999999988753 237899999 88762 1 1122356899998632
Q ss_pred -CceeEEeccceeeeecCC-CCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceE
Q psy2377 153 -GNITWNDLIKGKITISNK-ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230 (340)
Q Consensus 153 -~~~~~~D~i~G~~~~~~~-~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~ 230 (340)
....+.|.|.+.+.+.+. .-+|.+ +++|||+|||+|||++||||||||+.||..+.+.|.|++++|++..|...
T Consensus 200 ~~n~~~rD~v~~Ri~~~~h~~~gdk~----~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~p~~~ 275 (574)
T PTZ00437 200 SDNPNMRDFIAYRVKYVEHPHAKDKW----CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVW 275 (574)
T ss_pred CCCCccccCeeeeeccCCcCCCCCce----EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcccceE
Confidence 133455555554443322 113333 48999999999999999999999999999999999999999999999999
Q ss_pred EecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhccc
Q psy2377 231 HLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDC 294 (340)
Q Consensus 231 H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~ 294 (340)
|.|.+ |.+|.|||||+.. .||++|+++|++|+||++|++.+||+..+
T Consensus 276 ef~rl-n~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~---------------- 338 (574)
T PTZ00437 276 EFSRL-NVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSM---------------- 338 (574)
T ss_pred eeeee-cCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccc----------------
Confidence 99885 8899999999975 58999999999999999999999987632
Q ss_pred CcCCCCCccccHHHHHHHHHHHhhcCCHH
Q psy2377 295 KYLSKSPAQFNLKKLEWLNNFYIKSYDDK 323 (340)
Q Consensus 295 ~~~~~~~~~~d~~kl~~~n~~~i~~~~~~ 323 (340)
+.+++++|.+.|++.|+..+++
T Consensus 339 -------~~i~~~~Le~~nR~~ld~~a~R 360 (574)
T PTZ00437 339 -------NVIQISMLENTLREDLDERCER 360 (574)
T ss_pred -------eEeeHHHHHHHHHHHhcccCcc
Confidence 3455555556666655555544
No 25
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=7.1e-64 Score=454.16 Aligned_cols=221 Identities=33% Similarity=0.531 Sum_probs=201.7
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCcccc--chHHHHHHHHHHHHHcCCCCCCCCccccccH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINR--STLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r--~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~ 80 (340)
+|+|||||||||+|||||+|+|++||++||.++|+|++||||||++| +.+++.+.|+++|+|||++||+ +++||+|+
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~-~~~qS~r~ 79 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE-VVIASDRI 79 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC-ccchhccH
Confidence 47999999999999999999999999999999999999999999999 9999999999999999999996 78999999
Q ss_pred HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEec
Q psy2377 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
+.|++++++|+++|+||+ . .. . +
T Consensus 80 ~~y~~~~~~Li~~G~aY~------------------------------~-~~------~-------------~------- 102 (240)
T cd09287 80 ELYYEYARKLIEMGGAYV------------------------------H-PR------T-------------G------- 102 (240)
T ss_pred HHHHHHHHHHHHcCCccc------------------------------C-cc------c-------------C-------
Confidence 999999999999999997 1 00 0 0
Q ss_pred cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC
Q psy2377 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 161 i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g 240 (340)
+||++ +||||||+||||++|||||||||+||++|||+|++|+++||++.|.|.|+|++.+ +|
T Consensus 103 ------------~~~~i-----~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~~ 164 (240)
T cd09287 103 ------------SKYRV-----WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-EG 164 (240)
T ss_pred ------------CcEEE-----EEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-CC
Confidence 34665 4999999999999999999999999999999999999999999999999999976 58
Q ss_pred ceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccc
Q psy2377 241 VKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQF 304 (340)
Q Consensus 241 ~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 304 (340)
+|||||+++ .+++.|++.|++|++|++|+..+||+.+ +..+
T Consensus 165 ~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~-----------------------~~~~ 221 (240)
T cd09287 165 GKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQT-----------------------DATI 221 (240)
T ss_pred CeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCC-----------------------CCcc
Confidence 999999942 5799999999999999999999998642 3567
Q ss_pred cHHHHHHHHHHHhhcCCH
Q psy2377 305 NLKKLEWLNNFYIKSYDD 322 (340)
Q Consensus 305 d~~kl~~~n~~~i~~~~~ 322 (340)
++++|..+|+++|++.++
T Consensus 222 ~~~~l~~~~r~~l~~~~~ 239 (240)
T cd09287 222 SWENLYAINRKLIDPRAN 239 (240)
T ss_pred CHHHHHHHHHHHhccCCC
Confidence 889999999999998764
No 26
>KOG1147|consensus
Probab=100.00 E-value=7.2e-49 Score=378.36 Aligned_cols=278 Identities=23% Similarity=0.334 Sum_probs=240.5
Q ss_pred CCceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccH
Q psy2377 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (340)
Q Consensus 1 m~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~ 80 (340)
|++|++||+|.|+|+||||||++||+|+.+|..++|+.|+|+|||+|.++..+|.+.|++||..|||.+|. ..|.|+|+
T Consensus 198 ~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~-~TyTSDyF 276 (712)
T KOG1147|consen 198 MGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDR-VTYTSDYF 276 (712)
T ss_pred cCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcce-eeechhhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999997 78999999
Q ss_pred HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCC
Q psy2377 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPL 151 (340)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~---------~~~~~~~~~Rl~~~~ 151 (340)
+.+.+++.+|+++|+||....+.|.++.-|+ .+-++.||+. +.||.. ...|...++|.|.
T Consensus 277 ~~i~dycv~likeGKAYvDDTp~E~Mr~ER~--------~gv~Sk~R~~-~vEenl~iw~EM~kGs~~Gl~~CvRaKI-- 345 (712)
T KOG1147|consen 277 DEIMDYCVKLIKEGKAYVDDTPTEQMRDERE--------QGVESKCRSN-SVEENLRIWEEMKKGSEKGLKCCVRAKI-- 345 (712)
T ss_pred HHHHHHHHHHHhcCcccccCCcHHHHHHHHh--------ccccccccCC-CHHHHHHHHHHHhccchhhhhhheeeee--
Confidence 9999999999999999988877787766554 2457899999 888621 1334455666554
Q ss_pred CCceeEEeccceeeeecCCCCCCeEEEecC------------CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHH
Q psy2377 152 YGNITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINIL 219 (340)
Q Consensus 152 ~~~~~~~D~i~G~~~~~~~~~~DfVl~R~d------------G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~ 219 (340)
+++.+|..++|+||+|.+ -||||+|||.+-|+++||||.+|..|++...+...|++
T Consensus 346 ------------dm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i 413 (712)
T KOG1147|consen 346 ------------DMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFI 413 (712)
T ss_pred ------------cccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHH
Confidence 245567899999999986 38999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccC
Q psy2377 220 KALGVTLPFYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFS 283 (340)
Q Consensus 220 ~aLg~~~p~~~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~ 283 (340)
+|||+..|..+-.+.| |...+.||||+.. +|+++.+++|.+.|+|++|++..|-|
T Consensus 414 ~al~LRkp~iwefsRl-N~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~S-------- 484 (712)
T KOG1147|consen 414 DALGLRKPHIWEFSRL-NFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPS-------- 484 (712)
T ss_pred HHhcCCccceeehhhh-hhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCc--------
Confidence 9999999954444333 4457899999832 58999999999999999999988743
Q ss_pred HHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHHH
Q psy2377 284 IKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLL 326 (340)
Q Consensus 284 ~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~~ 326 (340)
++-..++|+|++++|++.|++..|++.+
T Consensus 485 ---------------k~v~~meWdkiWAfNKKvIDPVapRyta 512 (712)
T KOG1147|consen 485 ---------------KNVVTMEWDKIWAFNKKVIDPVAPRYTA 512 (712)
T ss_pred ---------------cceeeeehHhhhhhcccccCCCCcccee
Confidence 3447789999999999999999998754
No 27
>KOG1148|consensus
Probab=100.00 E-value=4.7e-46 Score=361.92 Aligned_cols=292 Identities=25% Similarity=0.372 Sum_probs=239.6
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|+|||+|.|+|+|||||+.+..+||-+|+.+||...||+|||+|+.+.++|.++|.+...|||.+|-. +.|.|+|++
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~k-vTysSDyFd 325 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYK-VTYSSDYFD 325 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCcee-eecchhHHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999875 789999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC---------CCCCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI---------PINRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~---------~~~~~~~~Rl~~~~~ 152 (340)
.++++|.+||.+|+||.|.|+.+||++.| |.... .+.+|++ ++||... -....+.+|||..-
T Consensus 326 qLy~~av~LIrkG~AYVcHqt~eEik~~r------g~~~~-~spwRdR-PieEsL~lF~~Mr~Gk~~eGeAtLRmK~dl- 396 (764)
T KOG1148|consen 326 QLYELAVELIRKGKAYVCHQTAEEIKERR------GFNER-LSPWRDR-PIEESLRLFEDMRDGKYEEGEATLRMKQDL- 396 (764)
T ss_pred HHHHHHHHHHhcCceeEEeccHHHHHhhc------CCCCC-CCccccC-cHHHHHHHHHHHhcCCcCcChhheeeeeec-
Confidence 99999999999999999999999998765 22233 5788998 8887320 12245678888742
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecC------------CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~d------------G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
...+..+-|.|-+|.- -||||++++++.|+++.|||.+|..|+..+...+.||+.
T Consensus 397 -------------~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcn 463 (764)
T KOG1148|consen 397 -------------ESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCN 463 (764)
T ss_pred -------------cCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHh
Confidence 1223344555555531 389999999999999999999999999999999999999
Q ss_pred HhCCCCCc---eEEecceecCCCceecccCCC----------------CChHHHHHcCCCHHHHHHHHHHhCCCCCCc--
Q psy2377 221 ALGVTLPF---YGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNE-- 279 (340)
Q Consensus 221 aLg~~~p~---~~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~p~al~~~l~~lG~~~~~~-- 279 (340)
+|+.-.|. |+.+++ .+..||||+-+ .||..||++|++|+||.+|++.+|.+.+..
T Consensus 464 aL~iY~P~qwEYgRLNv----~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i 539 (764)
T KOG1148|consen 464 ALEIYCPVQWEYGRLNV----TYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTI 539 (764)
T ss_pred hhhcccchhhhhceeee----eeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeecee
Confidence 99988784 555554 68999999832 589999999999999999999999976433
Q ss_pred cccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHHHH
Q psy2377 280 EIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLN 327 (340)
Q Consensus 280 ~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~~~ 327 (340)
++.-++..+..+- -...|+.++++++.|+ .|.++++.+...
T Consensus 540 ~v~~lE~~VRd~L-n~tapR~M~VleplkV------ti~N~~~~~~~~ 580 (764)
T KOG1148|consen 540 DVARLEAAVRDYL-NDTAPRLMFVLEPLKV------TIENLSDDYPES 580 (764)
T ss_pred cHHHHHHHHHHHH-hccCcceEEeecceEE------EEecCCcchhhh
Confidence 2334555666665 5567888999999998 555566554433
No 28
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.95 E-value=1.1e-27 Score=216.21 Aligned_cols=181 Identities=24% Similarity=0.321 Sum_probs=148.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc------------cchHHHHHHHHHHHHHcCCCCC
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN------------RSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~------------r~~~~~~~~i~~~l~~lGi~~d 70 (340)
.+|||||++||||+|++++.|.++| +..|.-|.+ ++|.+.+ ...+.+.+.+.+++++||+.+|
T Consensus 7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d 86 (212)
T cd00671 7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD 86 (212)
T ss_pred cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 4799999999999999999999999 678887777 5566643 2356677888999999999998
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~ 150 (340)
.. .+.|++.+...++++.|.++|.+|.- +|.+ . +...
T Consensus 87 ~~-~~es~~~~~~~~~i~~L~~~g~~~~~-----------------------~g~~-----------------~--~~~~ 123 (212)
T cd00671 87 VW-FGESSYLGLMGKVVELLEELGLLYEE-----------------------DGAL-----------------W--LDLT 123 (212)
T ss_pred ee-cchhhhhhHHHHHHHHHHHCCCEEEe-----------------------CCcE-----------------E--Eech
Confidence 64 36677789999999999999999741 1100 0 1110
Q ss_pred CCCceeEEeccceeeeecCCCCCCeEEEecCCCcchh---hHHHhhhhcCCCcEE--EeCCCCCCcHHHHHHHHHHhCCC
Q psy2377 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYN---FCAAIDDWDMKITHV--IRGDDHINNTPRQINILKALGVT 225 (340)
Q Consensus 151 ~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~---la~vvDD~~~githv--IrG~D~~~~t~~q~~l~~aLg~~ 225 (340)
. | ....|+||+|+||.|+|+ +|.++++..+++|+| |+|+||..++++|.+++++||++
T Consensus 124 ~-----~------------~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~ 186 (212)
T cd00671 124 E-----F------------GDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYD 186 (212)
T ss_pred h-----h------------CCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCC
Confidence 0 0 123789999999999999 788899999999999 89999999999999999999997
Q ss_pred -CCceEEe--cceecCCCceecccCC
Q psy2377 226 -LPFYGHL--PMVIDSNKVKISKRKE 248 (340)
Q Consensus 226 -~p~~~H~--pll~~~~g~KLSKR~g 248 (340)
.|.+.|+ +++.+.+|+|||||.|
T Consensus 187 ~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 187 EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 6789999 6888888999999986
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-26 Score=223.51 Aligned_cols=234 Identities=20% Similarity=0.206 Sum_probs=167.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~~d 70 (340)
-|+++.+.||||+|++++.|++.| .+.| .||.+|+|+|++ ...+.|++++.+|++.||+.++
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 499999999999999999999999 3444 477889999975 2357899999999999999653
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCcccccCCHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeC
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIE-SFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKN 149 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~-~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~ 149 (340)
....+.+++++.+.+++++|+++|+||.... ..+. .. ...+.| |.++...+.++. ..| -|..
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~--G~VYFdv-------~~f~~Y-G~LS~~~~le~l--~~g----ar~~- 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADD--GDVYFDV-------SKFKDY-GKLSGRDSLEEL--QAG----ARVE- 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecC--CcEEEec-------ccchhh-HhhcCCCChhHH--hhc----cccc-
Confidence 3345899999999999999999999997411 0110 00 011234 444422022210 000 0111
Q ss_pred CCCCceeEEeccceeeeecCCCCCCeEEEecC-------------CCcchhhHHHh-hhhcCCCcEEEe--CCCC----C
Q psy2377 150 PLYGNITWNDLIKGKITISNKELDDLVIVRAD-------------GIPTYNFCAAI-DDWDMKITHVIR--GDDH----I 209 (340)
Q Consensus 150 ~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~d-------------G~ptY~la~vv-DD~~~githvIr--G~D~----~ 209 (340)
....+.+..||||||+- |+|+||+.|++ -....|-+..|. |.|| |
T Consensus 172 ---------------~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHH 236 (464)
T COG0215 172 ---------------VDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHH 236 (464)
T ss_pred ---------------cccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCc
Confidence 11225577999999962 89999999995 233447776665 7786 7
Q ss_pred CcHHHHHHHHHHhCCCC-CceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy2377 210 NNTPRQINILKALGVTL-PFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG 277 (340)
Q Consensus 210 ~~t~~q~~l~~aLg~~~-p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~ 277 (340)
+|...|... +.|.++ ..|+.++-+++.+|+||||+.|+ +||+++++. +.|++||.||+.-.++.+
T Consensus 237 ENEiAQsea--~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~~lls~HYR~p 303 (464)
T COG0215 237 ENEIAQSEA--ATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSSHYRSP 303 (464)
T ss_pred ccHHHHHHh--hhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhh-cCHHHHHHHHHHHHhCCc
Confidence 899999763 456343 45544444458899999999997 799999987 999999999998777553
No 30
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=4.7e-25 Score=222.93 Aligned_cols=243 Identities=21% Similarity=0.283 Sum_probs=172.2
Q ss_pred eEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc-------------cchHHHHHHHHHHHHH
Q psy2377 4 VRTRF-APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN-------------RSTLSATQTIIDGMKW 64 (340)
Q Consensus 4 ~~~Rf-aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~-------------r~~~~~~~~i~~~l~~ 64 (340)
|+.-| +|||||+|||||+|+++++|.++| +..|.-|.+ ++|.+.+ ...+.+.+.+.++|++
T Consensus 113 v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (507)
T PRK01611 113 VVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDR 192 (507)
T ss_pred EEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556 899999999999999999999999 578988887 6788743 3467888999999999
Q ss_pred cCCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2377 65 LGLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRK 142 (340)
Q Consensus 65 lGi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~ 142 (340)
||+.+|..+ +.|+ +.+.+.+++++|.++|.+|.- .+|.
T Consensus 193 LgI~~D~~~-~es~~~~~~~~~~~~~~L~~~G~~y~~----------------------~~Ga----------------- 232 (507)
T PRK01611 193 LGVHFDVWF-SESELYYNGKVDEVVEDLKEKGLLYVE----------------------SDGA----------------- 232 (507)
T ss_pred cCCeeeEEe-ecCcchhcchHHHHHHHHHHCCCEEEe----------------------eCCc-----------------
Confidence 999998532 3333 346789999999999999820 0110
Q ss_pred ceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEecCCCcchh---hHHHhhhhcCCCcEE--EeCCCCCCcHHHHHH
Q psy2377 143 PVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYN---FCAAIDDWDMKITHV--IRGDDHINNTPRQIN 217 (340)
Q Consensus 143 ~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~---la~vvDD~~~githv--IrG~D~~~~t~~q~~ 217 (340)
.. +++.. | | +-+|+||+|+||.+||. +|...+...+ .+++ |.|+||..+.+++..
T Consensus 233 ~~--~~~~~-----~-----~-------~~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~ 292 (507)
T PRK01611 233 LW--VRLTE-----F-----G-------DDKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKA 292 (507)
T ss_pred EE--EEchh-----h-----C-------CCCCeEEEECCCCccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHHH
Confidence 01 11110 0 0 01489999999999998 5555666654 6677 899999999999999
Q ss_pred HHHHhCCCCCc---eEEe--cceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhh
Q psy2377 218 ILKALGVTLPF---YGHL--PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWF 291 (340)
Q Consensus 218 l~~aLg~~~p~---~~H~--pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f 291 (340)
++++||+.++. +.|+ .++.+.+|+|||||+|+ +++.+++++++.. ....+..- ...+.+.+ +.+.+|
T Consensus 293 ~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~--~~~~~~~~----~~a~~vgi-dAiR~~ 365 (507)
T PRK01611 293 ALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGR--ARELIEEK----EIAEAVGI-DAVRYF 365 (507)
T ss_pred HHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHH--HHHHHHhh----hhhhhhcc-ceeEeh
Confidence 99999987552 7884 58888899999999995 7999999874332 11111100 00111112 334556
Q ss_pred cccCcCCCCCccccHHHHHHHHH
Q psy2377 292 NDCKYLSKSPAQFNLKKLEWLNN 314 (340)
Q Consensus 292 ~~~~~~~~~~~~~d~~kl~~~n~ 314 (340)
. ++.-+.++..||++++...++
T Consensus 366 ~-L~~~~~~~~~Fd~~~~~~~~~ 387 (507)
T PRK01611 366 D-LSRSRDKDLDFDLDLALSFEG 387 (507)
T ss_pred h-hhcCCCCCCccCHHHHHhhcC
Confidence 6 666667777788877776654
No 31
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=1.7e-24 Score=216.40 Aligned_cols=224 Identities=21% Similarity=0.219 Sum_probs=161.3
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCC-
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYARH--FNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLN- 68 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar~--~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~- 68 (340)
..|+|+|++||||+|+++..|+++|. ..| .|+..++|+|++ ...+.+++.+.+++++||+.
T Consensus 29 cgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~~Lgi~~ 108 (463)
T PRK00260 29 CGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLP 108 (463)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 57999999999999999999999993 445 577779999864 12678999999999999994
Q ss_pred CCCCCccccccHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy2377 69 YDEGPFYQTKRINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKP 143 (340)
Q Consensus 69 ~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~ 143 (340)
+|. ..+.|++++.+.+++++|+++|++|.+ ||... .+.| |..++. ..++. ..|
T Consensus 109 ~d~-~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~--------------~~~y-g~ls~~-~~~~~--~~~--- 166 (463)
T PRK00260 109 PDI-EPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK--------------FPDY-GKLSGR-NLDEL--QAG--- 166 (463)
T ss_pred CCc-cccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc--------------cccc-ccCCCC-CHHHH--hcc---
Confidence 454 457789999999999999999999963 33221 1234 333332 22210 000
Q ss_pred eEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHH-hhhhcCCCcEEEe--CCC
Q psy2377 144 VIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAA-IDDWDMKITHVIR--GDD 207 (340)
Q Consensus 144 ~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~v-vDD~~~githvIr--G~D 207 (340)
-|. +....+.+..||+|||. .|.|+||+.|+ .-....|.+..|+ |.|
T Consensus 167 -~~~----------------~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~D 229 (463)
T PRK00260 167 -ARV----------------EVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGAD 229 (463)
T ss_pred -CcC----------------CcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccc
Confidence 010 11122456799999996 27999999996 3344557776665 899
Q ss_pred ----CCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 208 ----HINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 208 ----~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
||+|.-.|... +.|.+.+.+..++.+++.+|+|||||.|+ +++.++++. +.|+++|.+++.-.
T Consensus 230 lifpHh~neiaqs~a--~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~-~~~d~lR~~ll~~~ 297 (463)
T PRK00260 230 LIFPHHENEIAQSEA--ATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLSAH 297 (463)
T ss_pred cCCCchHhHHHHHHH--hcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHH-cCchHhHHHHHhCC
Confidence 78888777643 35733344444444457899999999997 799999986 99999999998643
No 32
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.92 E-value=1.2e-25 Score=209.28 Aligned_cols=230 Identities=20% Similarity=0.246 Sum_probs=148.9
Q ss_pred CCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCCCCC
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYDE 71 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~~d~ 71 (340)
|+|+.+.||||+|+++..|++.| +..| .+|..|.|+|++ .....+++++++++++||+.++.
T Consensus 16 PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~ 95 (300)
T PF01406_consen 16 PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPPD 95 (300)
T ss_dssp EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----S
T ss_pred CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999 5566 477889999965 23578999999999999998876
Q ss_pred CCccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC
Q psy2377 72 GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPL 151 (340)
Q Consensus 72 ~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~ 151 (340)
...+.|++++.+.+++++|+++|+||.-.. ..+.-. ....+.| |..++. ..++ ++.
T Consensus 96 ~~prate~i~~ii~~i~~Li~~G~AY~~~~--g~VYFd------v~~~~~Y-G~Ls~~-~~~~------------l~~-- 151 (300)
T PF01406_consen 96 HYPRATEHIPEIIELIEKLIDKGHAYESED--GSVYFD------VSKFPDY-GKLSNQ-DLED------------LEA-- 151 (300)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTTSEEEETT--SEEEE-------CCGSTTT-TTTTT--SHHH------------HHH--
T ss_pred cccchhccHHHHHHHHHHHHHCCCeEEcCC--CcEEEe------ecccccc-cccccc-chhh------------HHh--
Confidence 567999999999999999999999997320 000000 0011223 222222 1111 000
Q ss_pred CCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHh--hhhcCCCcEEE--eCCCC----CC
Q psy2377 152 YGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWDMKITHVI--RGDDH----IN 210 (340)
Q Consensus 152 ~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vv--DD~~~githvI--rG~D~----~~ 210 (340)
+. ..+....+.+..||+|||. .|+|+||+.|++ .+++ |-+..| .|.|| |+
T Consensus 152 -~~-------~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~l-G~~~DIH~GG~DL~FPHHE 222 (300)
T PF01406_consen 152 -GA-------RVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYL-GDTFDIHGGGIDLIFPHHE 222 (300)
T ss_dssp -CH-------HHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHH-TTSEEEEEEEGGGTTTHHH
T ss_pred -hh-------hcccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHc-CCCceEEccccccCCCCcc
Confidence 00 0111233557799999997 379999999994 4445 656555 48998 46
Q ss_pred cHHHHHHHHHHhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2377 211 NTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (340)
Q Consensus 211 ~t~~q~~l~~aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~ 276 (340)
|...|... +.|.+.. .|.|...| +.+|+||||+.|+ ++|++++++ ++|+++|.+|+.-.++.
T Consensus 223 NEiAqs~a--~~g~~~a~~W~H~g~l-~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~~hYr~ 286 (300)
T PF01406_consen 223 NEIAQSEA--ATGKPFANYWMHNGHL-NVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLSTHYRK 286 (300)
T ss_dssp HHHHHHHH--HHSS-SEEEEEEE--E-EETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHTS-TTS
T ss_pred chHHHHHH--hhCchHHHHHHHHHHH-hhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhcCCCCC
Confidence 77777653 3363334 46777766 5689999999997 899999976 99999999998776654
No 33
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=4e-24 Score=212.86 Aligned_cols=227 Identities=20% Similarity=0.222 Sum_probs=166.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCC----------ccc-------------cchHHHHHHHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDT----------DIN-------------RSTLSATQTIID 60 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~----------d~~-------------r~~~~~~~~i~~ 60 (340)
-|+|++++||||+|+++..|+++| +..| .||.+|.|+ |++ .....+++.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 499999999999999999999999 4455 577889999 543 235778889999
Q ss_pred HHHHcCCCCCCCCccccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q psy2377 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILP 135 (340)
Q Consensus 61 ~l~~lGi~~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~ 135 (340)
+++.||+.++....+.+++++.+.+++++|+++|++|. .||.+. .+.| |..+++ ++++.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~Y-G~Ls~~-~~~~l 173 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--------------FPSY-GSLASA-AVEDL 173 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--------------ccch-hhhcCC-CHHHh
Confidence 99999998875556789999999999999999999995 344421 1234 444433 33321
Q ss_pred CCCCCCCceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec----------------CCCcchhhHHHh--hhhcC
Q psy2377 136 SIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA----------------DGIPTYNFCAAI--DDWDM 197 (340)
Q Consensus 136 ~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~----------------dG~ptY~la~vv--DD~~~ 197 (340)
..|. |.. ....+.+..||+|||. .|.|+||+.|++ ..++
T Consensus 174 --~~g~----~v~----------------~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~l- 230 (490)
T PRK14536 174 --QAGA----RIE----------------HDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYL- 230 (490)
T ss_pred --hcCC----cCC----------------CCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHc-
Confidence 0010 110 0112456789999863 278999999995 3444
Q ss_pred CCcEEE--eCCCC----CCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHH
Q psy2377 198 KITHVI--RGDDH----INNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLA 270 (340)
Q Consensus 198 githvI--rG~D~----~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~ 270 (340)
|-+..| -|.|+ |.|.+.|... +.|.+.+.|+.+..+++.+|+|||||.|+ ++++++++.|+.|+++|.+++
T Consensus 231 g~~~DIH~GG~DliFPHHeneiAqs~a--~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~ll 308 (490)
T PRK14536 231 GEQCDIHIGGVDHIRVHHTNEIAQCEA--ATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLL 308 (490)
T ss_pred CCceeEEeccccCCCcchhhHHHHHHH--hcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHH
Confidence 544454 48887 5788888753 24766676655555557899999999996 899999999999999999998
Q ss_pred HhCCCC
Q psy2377 271 RLGWSH 276 (340)
Q Consensus 271 ~lG~~~ 276 (340)
.-.+..
T Consensus 309 s~~yr~ 314 (490)
T PRK14536 309 GGHYRS 314 (490)
T ss_pred hCCCCC
Confidence 865544
No 34
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.92 E-value=5.2e-24 Score=212.68 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=162.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcC---CcEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFN---GIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~---G~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~~d 70 (340)
.|+|+|++||||+|+++..|+++| +.. ..|+..++|+|++ ...+.+.+.+.+++++||+.+|
T Consensus 28 gptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~d 107 (465)
T TIGR00435 28 GPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPP 107 (465)
T ss_pred cCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 589999999999999999999999 334 4688889999974 2247889999999999999988
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCccccc------CCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYYCY------SSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~------cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~ 144 (340)
......|++++.+.+++++|+++|++|.+. |..+ .+.| |.+++. ..++. ..+.
T Consensus 108 ~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~--------------~~~y-G~ls~~-~~~~~--~~~~--- 166 (465)
T TIGR00435 108 DLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK--------------FKDY-GKLSKQ-DLDQL--EAGA--- 166 (465)
T ss_pred cCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------cchh-ccCCCC-CHHHH--hccc---
Confidence 644578899999999999999999999743 2111 1234 444433 22210 0000
Q ss_pred EEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHhh-hhcCCCcEEE--eCCCC
Q psy2377 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVI--RGDDH 208 (340)
Q Consensus 145 ~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vvD-D~~~githvI--rG~D~ 208 (340)
|. ++...+.+..||+|||+ .|.|+||+.|++. ....|.+..| -|.||
T Consensus 167 -~~----------------~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl 229 (465)
T TIGR00435 167 -RV----------------DVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDL 229 (465)
T ss_pred -cc----------------CcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeecccccc
Confidence 10 01112456799999996 2799999999953 3334654444 48888
Q ss_pred ----CCcHHHHHHHHHHhCCCCCc-eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCC
Q psy2377 209 ----INNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (340)
Q Consensus 209 ----~~~t~~q~~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~ 275 (340)
|.|...|... +.|.+.+. |.|..+ ++.+|+|||||.|+ ++++++++. +.|+++|.|++.-.+.
T Consensus 230 ~fpHhene~aqs~a--~~g~~~~~~~~h~g~-v~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~~~~~ 298 (465)
T TIGR00435 230 IFPHHENEIAQSEA--AFGKQLAKYWMHNGF-LMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSVHYR 298 (465)
T ss_pred ccchHHHHHHHHHH--hcCCCCCcEEEEeeE-EEecCccccccCCCcCCHHHHHHH-CCHHHHHHHHHhCCCC
Confidence 5677777643 35755555 466555 57899999999997 799999987 9999999999875543
No 35
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=8.7e-24 Score=209.55 Aligned_cols=229 Identities=19% Similarity=0.167 Sum_probs=164.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCC----------ccc-------------cchHHHHHHHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDT----------DIN-------------RSTLSATQTIID 60 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~----------d~~-------------r~~~~~~~~i~~ 60 (340)
-|+|+.++||||+|+++..|+++| +..| .||.+|.|+ |++ .....+.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 499999999999999999999999 4455 577889999 653 235788899999
Q ss_pred HHHHcCCCCCCCCccccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q psy2377 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILP 135 (340)
Q Consensus 61 ~l~~lGi~~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~ 135 (340)
+++.||+.++....+.+++++.+++++++|+++|++|. .||..+ .+.| |..+++ ..++.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~Y-G~ls~~-~l~~l 171 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--------------FKSY-GQMAGI-NLNDF 171 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--------------ccch-hhhcCC-CHHHH
Confidence 99999999886545789999999999999999999995 333322 1234 333333 32220
Q ss_pred CCCCCCCceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec----------------CCCcchhhHHHhh-hhcCC
Q psy2377 136 SIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA----------------DGIPTYNFCAAID-DWDMK 198 (340)
Q Consensus 136 ~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~----------------dG~ptY~la~vvD-D~~~g 198 (340)
....+ -|+.. ...+.+..||+|||. .|+|+||+.|++. ....|
T Consensus 172 ~~~~~----~~v~~----------------~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg 231 (481)
T PRK14534 172 KDMSV----SRVEI----------------DKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFK 231 (481)
T ss_pred hhhcc----CcCCc----------------ccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcC
Confidence 00000 01111 112456789999973 2899999999953 22335
Q ss_pred CcEEEe--CCCC----CCcHHHHHHHHHHhCCCCCce-EEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHH
Q psy2377 199 ITHVIR--GDDH----INNTPRQINILKALGVTLPFY-GHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLA 270 (340)
Q Consensus 199 ithvIr--G~D~----~~~t~~q~~l~~aLg~~~p~~-~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~ 270 (340)
-+..|. |.|| |.|.+.|... +.|.+.+.| .|..++ +.+|+|||||.|+ ++++++++.|+.|+++|.+++
T Consensus 232 ~~~DIH~GG~DliFPHHene~Aqs~a--~~g~~~~~~W~H~g~l-~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~ll 308 (481)
T PRK14534 232 STLDIHLGGVDHIGVHHINEIAIAEC--YLNKKWCDMFVHGEFL-IMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCL 308 (481)
T ss_pred CcceEEecccccCCCcchhHHHHHhh--hcCCCcceEEEEecEE-EecCceecccCCCcccHHHHHhcCCChhHHHHHHH
Confidence 555554 7887 6788888753 247766654 555554 6689999999996 899999999999999999988
Q ss_pred HhCCCC
Q psy2377 271 RLGWSH 276 (340)
Q Consensus 271 ~lG~~~ 276 (340)
.-....
T Consensus 309 s~~yr~ 314 (481)
T PRK14534 309 TAHYRT 314 (481)
T ss_pred hCCCCC
Confidence 766544
No 36
>PLN02946 cysteine-tRNA ligase
Probab=99.91 E-value=7.1e-24 Score=213.24 Aligned_cols=225 Identities=18% Similarity=0.155 Sum_probs=166.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~~d 70 (340)
-|+|+|+.||||+|+++..|+++| ++.| .||..|+|+|++ ...+.+++.+.+++++||+..+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 599999999999999999999999 4555 477789999864 2367899999999999999865
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceE
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVI 145 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~ 145 (340)
....+.|++++.+.+++++|+++|+||. .||.++ .+.| |..++. +.++. ..|.
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--------------f~~Y-G~Ls~~-~l~~l--~~g~---- 224 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--------------FPEY-GKLSGR-KLEDN--RAGE---- 224 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------chhh-hhcCCC-ChhHh--hcCC----
Confidence 5456788999999999999999999995 333321 1234 444443 33321 0010
Q ss_pred EEeCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHh--hhhcCCCcEEEe--CCCC
Q psy2377 146 RFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWDMKITHVIR--GDDH 208 (340)
Q Consensus 146 Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vv--DD~~~githvIr--G~D~ 208 (340)
|.. ....+.+..||+|||. .|+|+||+.|++ .+++ |-+..|. |.||
T Consensus 225 rv~----------------~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~l-G~~~DIH~GG~DL 287 (557)
T PLN02946 225 RVA----------------VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYL-GHSFDIHGGGMDL 287 (557)
T ss_pred CCC----------------cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHc-CCCeeEecccccc
Confidence 111 1113457799999996 389999999995 3444 6666665 7786
Q ss_pred ----CCcHHHHHHHHHHhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2377 209 ----INNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (340)
Q Consensus 209 ----~~~t~~q~~l~~aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~ 276 (340)
|+|...|... +.|.+.. .|.|..+| +.+|+|||||.|+ ++++++++. +.|+++|.||+.-.+..
T Consensus 288 ~FPHHENEiAQsea--~~g~~~a~yW~H~G~v-~~~G~KMSKSlGN~itl~dll~~-y~~dalR~~lLs~hyr~ 357 (557)
T PLN02946 288 VFPHHENEIAQSCA--ACCDSNISYWIHNGFV-TVDSEKMSKSLGNFFTIRQVIDL-YHPLALRLFLLGTHYRS 357 (557)
T ss_pred CCCcccchHHHHHH--HhCCCCCceeeEeeEE-EeCCCCcCCcCCCcCCHHHHHHh-cCccceeeeeeccCCCC
Confidence 6888888753 3464433 46777766 4799999999997 899999986 99999999998766544
No 37
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=7.2e-24 Score=205.42 Aligned_cols=237 Identities=16% Similarity=0.099 Sum_probs=162.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCC-CC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGL-NY 69 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi-~~ 69 (340)
.|+|+|++||||+|+++..|+++| +..| .||..++|+|++ ...+.+.+.+.++++.||+ .+
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 599999999999999999999999 4555 477789999864 2357788999999999997 55
Q ss_pred CCCCccccccHHHHHHHHHHHHHcCCcccccCCH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEe
Q psy2377 70 DEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSV-EEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFK 148 (340)
Q Consensus 70 d~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~-~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~ 148 (340)
+. .++.|++++.+++++++|+++|++|.-.... ..+.-- ....+.| |..++. ..++. ..+. .-|.
T Consensus 96 ~~-~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFd------v~~~~~Y-G~ls~~-~~~~~--~~~~--~~~~- 161 (384)
T PRK12418 96 RD-YVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFS------VDATPQF-GYESGY-DRATM--LELF--AERG- 161 (384)
T ss_pred Cc-cccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEe------cCchhhc-ccccCC-CHHHH--Hhhh--cccc-
Confidence 54 5688899999999999999999999622100 001000 0001233 333333 22210 0000 0000
Q ss_pred CCCCCceeEEeccceee-eecCCCCCCeEEEec-------------CCCcchhhHHHh--hhhcCCCcEEEe--CCCC--
Q psy2377 149 NPLYGNITWNDLIKGKI-TISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWDMKITHVIR--GDDH-- 208 (340)
Q Consensus 149 ~~~~~~~~~~D~i~G~~-~~~~~~~~DfVl~R~-------------dG~ptY~la~vv--DD~~~githvIr--G~D~-- 208 (340)
.+. ...+.+..||+|||+ .|+|+||+.|++ .+++ |-+..|+ |.||
T Consensus 162 --------------~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~l-g~~~DIH~GG~DL~F 226 (384)
T PRK12418 162 --------------GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRL-GSGFDIQGGGSDLIF 226 (384)
T ss_pred --------------cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHc-CCCcccccCcccccc
Confidence 001 113457799999996 389999999984 3444 5555555 6777
Q ss_pred --CCcHHHHHHHHHHhCC-CCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2377 209 --INNTPRQINILKALGV-TLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (340)
Q Consensus 209 --~~~t~~q~~l~~aLg~-~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~ 276 (340)
|+|+..|... +.|- +.+.+..+..+++.+|+||||+.|+ +++.++.+.|+.|+++|.||+.-.+..
T Consensus 227 PHHeneiaq~~a--~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~ 296 (384)
T PRK12418 227 PHHEFSAAHAEA--ATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRA 296 (384)
T ss_pred chhHhHHHHHHH--hcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCC
Confidence 5677777643 3565 4456666666679999999999997 899999888999999999987544433
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.90 E-value=1.1e-23 Score=205.26 Aligned_cols=238 Identities=17% Similarity=0.108 Sum_probs=163.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCC-C
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLN-Y 69 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~-~ 69 (340)
.|+|++++||||+|+++..|+++| +..| .||..++|+|++ ...+.+.+.+.++++.||+. +
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999 4556 477779999864 23578889999999999986 4
Q ss_pred CCCCccccccHHHHHHHHHHHHHcCCcccccCCH-HHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q psy2377 70 DEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSV-EEIE-SFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRF 147 (340)
Q Consensus 70 d~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~-~~l~-~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl 147 (340)
+. .++.|++++.+.+++++|+++|++|.-.... ..+. ... ..+.| |..++. ..++. ..+. .-|
T Consensus 123 d~-~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~-------~~~~Y-G~Ls~~-~~~~~--~~~~--~~~- 187 (411)
T TIGR03447 123 RD-YIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIE-------ATEQF-GYESGY-DRATM--LELF--AER- 187 (411)
T ss_pred Cc-ccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEecc-------chhcc-ccccCC-CHHHH--Hhhh--ccc-
Confidence 54 5689999999999999999999999622100 0010 000 01123 222222 22110 0000 000
Q ss_pred eCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHh-hhhcCCCcEEEe--CCCC---
Q psy2377 148 KNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI-DDWDMKITHVIR--GDDH--- 208 (340)
Q Consensus 148 ~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vv-DD~~~githvIr--G~D~--- 208 (340)
.+... ...+.+..||+|||. .|+|+||+.|++ -....|-+..|+ |.||
T Consensus 188 ------~~~~~-------~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifp 254 (411)
T TIGR03447 188 ------GGDPD-------RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFP 254 (411)
T ss_pred ------ccCcc-------cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCccccccc
Confidence 00000 113457799999996 389999999985 233447777787 8888
Q ss_pred -CCcHHHHHHHHHHhCC-CCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2377 209 -INNTPRQINILKALGV-TLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (340)
Q Consensus 209 -~~~t~~q~~l~~aLg~-~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~ 276 (340)
|+|.-.|... +.|. +.+.++.+.-+++.+|+||||+.|+ ++++++.+.|+.|+++|.|++.-.++.
T Consensus 255 Hheneiaq~~A--~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~ 323 (411)
T TIGR03447 255 HHEFSAAHAEA--ATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQ 323 (411)
T ss_pred chHhHHHHHHH--hcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCC
Confidence 4566666643 3465 4566655555668899999999997 799999988999999999997555443
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=3e-22 Score=203.16 Aligned_cols=225 Identities=21% Similarity=0.192 Sum_probs=163.9
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc-------------cchHHHHHHHHHHHHHcCCCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~~d 70 (340)
-|+|+++.||||+|+++..|+++| +..| .||..++|+|++ ...+.+++.+.+++..||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 499999999999999999999999 4555 477779999865 2357889999999999999988
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYY------CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~------c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~ 144 (340)
....+.|++++.+.+++++|+++|+||. +||.++ .+.| |..+++ +.++. ..|.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------f~~Y-G~LS~~-~~~~l--~~g~--- 393 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------FAAY-GQLSGK-SLDDL--RAGE--- 393 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--------------cccc-ccccCC-ChHHh--cCCC---
Confidence 6556788999999999999999999995 233321 1234 444333 33221 0000
Q ss_pred EEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHhh-hhcCCCcEEEe--CCCC
Q psy2377 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVIR--GDDH 208 (340)
Q Consensus 145 ~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vvD-D~~~githvIr--G~D~ 208 (340)
|.. ....+.+..||+|||+ .|+|+||+.|++. ....|-+..|. |.||
T Consensus 394 -rve----------------~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DL 456 (699)
T PRK14535 394 -RVE----------------VDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADL 456 (699)
T ss_pred -ccc----------------cccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCcccc
Confidence 111 1112456799999996 3899999999953 23346665554 7776
Q ss_pred ----CCcHHHHHHHHHHhCCC-------------C-C---ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHH
Q psy2377 209 ----INNTPRQINILKALGVT-------------L-P---FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAIL 266 (340)
Q Consensus 209 ----~~~t~~q~~l~~aLg~~-------------~-p---~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~ 266 (340)
|+|...|... +.|.+ + | .|.|..+|. .+|+||||+.|+ ++++++++. +.|+++|
T Consensus 457 iFPHHENEiAQseA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe~-ygpdalR 532 (699)
T PRK14535 457 QFPHHENEIAQSVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLKQ-YDPEVVR 532 (699)
T ss_pred CCCCCccHHHHHHH--hhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHHh-CCHHHHH
Confidence 7899898753 23542 1 1 477777764 799999999997 899999986 9999999
Q ss_pred HHHHHhCCC
Q psy2377 267 NYLARLGWS 275 (340)
Q Consensus 267 ~~l~~lG~~ 275 (340)
.|++.-.+.
T Consensus 533 l~lLsshYR 541 (699)
T PRK14535 533 FFILRAHYR 541 (699)
T ss_pred HHHHcCCCC
Confidence 999875443
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.85 E-value=1e-20 Score=195.17 Aligned_cols=234 Identities=18% Similarity=0.221 Sum_probs=161.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--H-cCC---cEEEEecCCccc--------------cchHHHHHHHHHHHHHcCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--H-FNG---IFILRIEDTDIN--------------RSTLSATQTIIDGMKWLGLN 68 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~-~~G---~~vlRieD~d~~--------------r~~~~~~~~i~~~l~~lGi~ 68 (340)
-|+++++.||||+|+++..|+++| . +.| .||..|+|+|++ .....+++.+.++++.||+.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 399999999999999999999999 4 556 477789999865 12367889999999999999
Q ss_pred CCCCCccccccHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy2377 69 YDEGPFYQTKRINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKP 143 (340)
Q Consensus 69 ~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~ 143 (340)
++....+.|++++.+.+++++|+++|+||.- |+.. .+... + ..| |. + +++. ....
T Consensus 147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~----~f~~~----~--~~Y-g~---L-~p~~-----~~~~ 206 (651)
T PTZ00399 147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVE----AFRKA----G--HVY-PK---L-EPES-----VADE 206 (651)
T ss_pred CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEch----hcccc----h--hhH-Hh---h-Chhh-----cCCH
Confidence 8776677899999999999999999999962 2221 11100 0 123 22 1 2110 0000
Q ss_pred eEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHh--hhhcCCCcEEEe--CC
Q psy2377 144 VIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWDMKITHVIR--GD 206 (340)
Q Consensus 144 ~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vv--DD~~~githvIr--G~ 206 (340)
. .+... ++.+ . .....+.+..||+||+. .|.|+||+.|++ .|++ |.+..|. |.
T Consensus 207 ~-~~~~g-~~~l--~-----~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~l-g~~~DIh~gG~ 276 (651)
T PTZ00399 207 D-RIAEG-EGAL--G-----KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNIL-GDPIDIHSGGI 276 (651)
T ss_pred H-HHhcc-cCCc--c-----ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHc-CCcceeeccCC
Confidence 0 00000 0000 0 01112345678888885 289999998885 4555 6666665 77
Q ss_pred CC----CCcHHHHHHHHHHhCC-CCCc-eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2377 207 DH----INNTPRQINILKALGV-TLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (340)
Q Consensus 207 D~----~~~t~~q~~l~~aLg~-~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~ 276 (340)
|+ |+|.-.|... +.|- +.+. |.|... ++.+|+|||||.|+ ++++++++. ++|+++|.||+.-.+..
T Consensus 277 DL~FPHHeNEiAQseA--~~~~~~~v~y~~H~G~-L~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~lLs~~~~~ 349 (651)
T PTZ00399 277 DLKFPHHDNELAQSEA--YFDKHQWVNYFLHSGH-LHIKGLKMSKSLKNFITIRQALSK-YTARQIRLLFLLHKWDK 349 (651)
T ss_pred CCCCCcchhHHHHHHH--hhCCCCCCcEEEEEEE-EEeccchhhhcCCCcccHHHHHHH-cChHHHHHHHHhcCCCC
Confidence 77 6888888764 3464 3344 666676 47799999999997 899999987 99999999998655543
No 41
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.8e-20 Score=187.71 Aligned_cols=301 Identities=17% Similarity=0.146 Sum_probs=185.9
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccccchHHHHHHHHHHHHHcCCCCC-CCCccccccHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDINRSTLSATQTIIDGMKWLGLNYD-EGPFYQTKRINR 82 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~l~~lGi~~d-~~~~~qS~~~~~ 82 (340)
+|||||||||||+|++++++.+|| +.-|+-|.| |+|.+ +|....+-++... |.... ..+---...-+.
T Consensus 125 SaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G--~Q~~~l~~~~~~~----~~e~~~~~~~~~~~lg~~ 198 (577)
T COG0018 125 SANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG--TQIGMLALSYEKR----GREALGLTPEPDGYLGEY 198 (577)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH--HHHHHHHHHHHHh----ccccccCCCCcchHHHHH
Confidence 799999999999999999999999 789999998 88888 6665555555422 22211 001011122355
Q ss_pred HHHHHHHHHHcCCc--c---------c---cc------CCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCC-C
Q psy2377 83 YFEIINYLLSNDYA--Y---------Y---CY------SSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPIN-R 141 (340)
Q Consensus 83 y~~~~~~L~~~G~a--Y---------~---c~------cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~-~ 141 (340)
|.++.+.|.+.... . . -. +....++.+++.-...| ..||.+..+. +... ++ .
T Consensus 199 y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~--V~fD~~~~E~-e~~~----~~~~ 271 (577)
T COG0018 199 YVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLG--VKFDVYDSEG-ESFY----NGKV 271 (577)
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhC--cccceeeccc-hhhh----cccH
Confidence 77777777665432 1 1 01 01111222233233344 3455443221 1110 11 1
Q ss_pred CceE-EEeCCCCCceeEEeccceee---ee---cCCCCCCeEEEecCCCcchh---hHHHhhhhcCCCcEE--EeCCCCC
Q psy2377 142 KPVI-RFKNPLYGNITWNDLIKGKI---TI---SNKELDDLVIVRADGIPTYN---FCAAIDDWDMKITHV--IRGDDHI 209 (340)
Q Consensus 142 ~~~~-Rl~~~~~~~~~~~D~i~G~~---~~---~~~~~~DfVl~R~dG~ptY~---la~vvDD~~~githv--IrG~D~~ 209 (340)
+.++ .|+. .+.+...| |+. +. ...+..|.||+||||.++|. +|...+.+..|.+.+ |.|+||+
T Consensus 272 ~~vv~~L~~--~~~~~e~~---GA~~vdl~~~~~~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~ 346 (577)
T COG0018 272 EKVVEDLEE--KGLLYEDD---GALVVDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQH 346 (577)
T ss_pred HHHHHHHHh--cCCEeeeC---CeEEEehhhhhhcCCCCCeEEEEcCCCeeeehhHHHHHHHHHhcCCCEEEEEeCCcch
Confidence 1111 1221 12222222 444 22 22344699999999999995 666688887899988 6799999
Q ss_pred CcHHHHHHHHHHhCCCCCc--eEEe--cceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC--CCCC--Ccc
Q psy2377 210 NNTPRQINILKALGVTLPF--YGHL--PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG--WSHG--NEE 280 (340)
Q Consensus 210 ~~t~~q~~l~~aLg~~~p~--~~H~--pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG--~~~~--~~~ 280 (340)
.+.++-...++++|+.++. ..|. .++.+++|+|||||.|. ++++++++. +.-.....+. -..+ ..+
T Consensus 347 ~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde-----~~era~~~~~~~~~~~~~iA~ 421 (577)
T COG0018 347 GHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE-----AGERAPEEMEEKEEKNEEIAE 421 (577)
T ss_pred hHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH-----HHHHhhhHhhhhhhhhHHHHH
Confidence 9998888889999998773 5555 57777899999999995 899998875 1111111000 0000 001
Q ss_pred ccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCC-HHHHHHhHHHHHHhcC
Q psy2377 281 IFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD-DKKLLNLIQPIIKKKK 337 (340)
Q Consensus 281 ~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~-~~~~~~~~~~~~~~~~ 337 (340)
.+.+ +++.++. ++.-+.++..|||+++.++++ .+.+ ..+-..|+.+.|.+++
T Consensus 422 ~vgi-~Avry~~-l~~~~~~~~~Fd~d~~lsfeg---Nt~pYvQYA~ARi~SIlrka~ 474 (577)
T COG0018 422 VVGI-DAVRYAD-LSRSRDKDYVFDWDKALSFEG---NTAPYVQYAHARICSILRKAG 474 (577)
T ss_pred Hhhh-hhHHHHH-HhcCCCCCcEeeHHHHHhccC---CCchhHHHHHHHHHHHHHhcc
Confidence 1111 4677788 999999999999999999988 4444 3456688888888776
No 42
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=9.4e-20 Score=186.11 Aligned_cols=299 Identities=14% Similarity=0.140 Sum_probs=176.6
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
.+|||||+||+||+|++++++.++| +..|.-|.| |+|.+ +++......+. .+|-........-.+....
T Consensus 120 sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G--~Q~~~l~~~~~----~~~~~~~~~~~~~~~l~~~ 193 (562)
T PRK12451 120 SSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWG--TQFGKLITAYK----KWGNEAVVKEDPIRELFKL 193 (562)
T ss_pred cCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCch--HHHHHHHHHHH----HhCCccccccCchHHHHHH
Confidence 4799999999999999999999999 789999998 77888 66665554442 2354321100001113334
Q ss_pred HHHHHHHH-------------H---HcCCcc----cccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2377 83 YFEIINYL-------------L---SNDYAY----YCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRK 142 (340)
Q Consensus 83 y~~~~~~L-------------~---~~G~aY----~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~ 142 (340)
|.++.+.+ . +.|... .-.+....++.+++.-...| ..|+ .+..- +... .+..
T Consensus 194 Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~--V~fD-~~~~e-s~~~----~~~~ 265 (562)
T PRK12451 194 YVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLG--VEFT-NFQGE-AFYN----DLME 265 (562)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CCce-eecch-Hhhh----hhHH
Confidence 44433322 1 122110 00001111222333334444 4555 32222 2211 1112
Q ss_pred ceE-EEeCCCCCceeEEeccceeeeecCCCC--CCeEEEecCCCcchhhHH---HhhhhcC-CCcEE--EeCCCCCCcHH
Q psy2377 143 PVI-RFKNPLYGNITWNDLIKGKITISNKEL--DDLVIVRADGIPTYNFCA---AIDDWDM-KITHV--IRGDDHINNTP 213 (340)
Q Consensus 143 ~~~-Rl~~~~~~~~~~~D~i~G~~~~~~~~~--~DfVl~R~dG~ptY~la~---vvDD~~~-githv--IrG~D~~~~t~ 213 (340)
.++ +|+. .|.+...| |+.+...+.. .|.||+||||.+||...+ ..+.+.. +.+.+ |.|+||....+
T Consensus 266 ~v~~~L~~--~g~~~e~d---Ga~~~~~~~~g~~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~ 340 (562)
T PRK12451 266 DFIGILEE--HDLLEESE---GALVVNLEEEGMPPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFN 340 (562)
T ss_pred HHHHHHHH--CCCEEecC---CeEEEEecccCCCceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHH
Confidence 222 2322 13333333 6666544433 489999999999996544 4677664 88888 67999999999
Q ss_pred HHHHHHHHhCCCCC-ceEEecc-eecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh---CCCCCCcc----ccC
Q psy2377 214 RQINILKALGVTLP-FYGHLPM-VIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL---GWSHGNEE----IFS 283 (340)
Q Consensus 214 ~q~~l~~aLg~~~p-~~~H~pl-l~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l---G~~~~~~~----~~~ 283 (340)
+-..++++||+.++ .+.|+.. +++.+|+|||||.|. +++++|++. ++..+...+ +-..++.+ .+.
T Consensus 341 ~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLlde-----a~~~a~~~~~~~~~~l~~~~~~a~~vg 415 (562)
T PRK12451 341 QFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEE-----AIELAKQNIEEKNPNLKQKEEVAKQVG 415 (562)
T ss_pred HHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHhc
Confidence 99999999998754 4777753 223477899999994 899999975 232222222 11000111 011
Q ss_pred HHHHHHhhcccCcCCCCCccccHHHHHHHHHH---HhhcCCHHHHHHhHHHHHHhcC
Q psy2377 284 IKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNF---YIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 284 ~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~---~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
. +.+.+|. ++.-+.++..||++++..++++ ||+ +-..|+...|.+++
T Consensus 416 ~-~Airy~~-l~~~~~~~~~Fd~d~~l~~~g~t~pYiQ-----Ya~AR~~SIlrka~ 465 (562)
T PRK12451 416 V-GAVIFHD-LKNERMHNIEFSLENMLKFEGETGPYVQ-----YTHARACSILRKES 465 (562)
T ss_pred c-ceeeeHH-hhcCCCCCceECHHHHhCcCCCccHHHH-----HHHHHHHHHHHhcC
Confidence 1 2455677 9999999999999998777533 444 55667777777665
No 43
>PLN02286 arginine-tRNA ligase
Probab=99.81 E-value=3.1e-19 Score=182.60 Aligned_cols=296 Identities=16% Similarity=0.144 Sum_probs=170.6
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
.+|||||+||+||+|++++++.+|| +..|.-|.| |+|.+ +++.....++.. .+|-..+....+-.+....
T Consensus 124 sSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G--~Qi~~l~~~~~~---~~~~~~~~~~~~i~~l~~~ 198 (576)
T PLN02286 124 SSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG--TQFGMLIEHLFE---KFPNWESVSDQAIGDLQEF 198 (576)
T ss_pred cCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH--HHHHHHHHHHHH---hcCcccccCcccHHHHHHH
Confidence 4799999999999999999999999 789999999 77888 666666555532 2331100000001112222
Q ss_pred HHHHHHHH-------------H---HcCCc-------ccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC
Q psy2377 83 YFEIINYL-------------L---SNDYA-------YYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPI 139 (340)
Q Consensus 83 y~~~~~~L-------------~---~~G~a-------Y~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~ 139 (340)
|.++.+.+ . ++|.. ..|..+ ++.+++.-...| ..|+.. .- +... .
T Consensus 199 Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~---~~~~~~~y~~l~--V~fd~~--ge-s~y~----~ 266 (576)
T PLN02286 199 YKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEIS---RREFEKVYQRLR--VELEEK--GE-SFYN----P 266 (576)
T ss_pred HHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHHHHHHHHhC--Ceeeec--Cc-hhhh----h
Confidence 33322221 1 01110 001111 111111122233 233321 11 1111 1
Q ss_pred CCCceE-EEeCCCCCceeEEeccceeeeecCCCC-CCeEEEecCCCcchhhHH---HhhhhcC-CCcEE--EeCCCCCCc
Q psy2377 140 NRKPVI-RFKNPLYGNITWNDLIKGKITISNKEL-DDLVIVRADGIPTYNFCA---AIDDWDM-KITHV--IRGDDHINN 211 (340)
Q Consensus 140 ~~~~~~-Rl~~~~~~~~~~~D~i~G~~~~~~~~~-~DfVl~R~dG~ptY~la~---vvDD~~~-githv--IrG~D~~~~ 211 (340)
+.+.++ +|+. .|.+...| |..++..+.. .|.||+||||.+||...+ ..+.+.. +.+++ |.|+||...
T Consensus 267 ~~~~vi~~L~~--~g~~~e~d---Ga~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~h 341 (576)
T PLN02286 267 YIPGVIEELES--KGLVVESD---GARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQH 341 (576)
T ss_pred hHHHHHHHHHH--CCCEEeeC---CceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHH
Confidence 111121 2222 13333333 6666543444 589999999999996544 4677765 68877 679999999
Q ss_pred HHHHHHHHHHhCCCCC----ceEEec--ceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC-------CCCC
Q psy2377 212 TPRQINILKALGVTLP----FYGHLP--MVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG-------WSHG 277 (340)
Q Consensus 212 t~~q~~l~~aLg~~~p----~~~H~p--ll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG-------~~~~ 277 (340)
..+-..++++||+..+ ...|+. +|...+|.|||||.|. +++++|+++ +.-.....+. ++..
T Consensus 342 f~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dllde-----a~~~a~~~~~~~~~~~~~~~~ 416 (576)
T PLN02286 342 FDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDE-----AKSRSKAALIERGKDSEWTPE 416 (576)
T ss_pred HHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHH-----HHHHHHHHHHhccCccccchh
Confidence 9999999999998633 577775 5655678899999995 899999974 2222222221 1110
Q ss_pred Cc----cccCHHHHHHhhcccCcCCCCCccccHHHHHHHHH---HHhhcCCHHHHHHhHHHHHHhcC
Q psy2377 278 NE----EIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNN---FYIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 278 ~~----~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~---~~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
+. +.+.. +.+.+|. ++.-+.++..||++++..+++ -|| .+-..|+...|.+++
T Consensus 417 ~~~~~a~~vg~-~Airy~~-L~~~~~~~~~Fd~d~~l~~~g~t~pYl-----QYahAR~~SIlrKa~ 476 (576)
T PLN02286 417 ELEQAAEAVGY-GAVKYAD-LKNNRLTNYTFSFDQMLDLKGNTAVYL-----LYAHARICSIIRKSG 476 (576)
T ss_pred hHHHHHHHhhh-hhhhhhh-hhcCCCCCCccCHHHHHhhcCCChHHH-----HHHHHHHHHHHHhcc
Confidence 00 01111 4567788 999999999999999877643 343 345566666666554
No 44
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.80 E-value=1.3e-18 Score=178.03 Aligned_cols=304 Identities=16% Similarity=0.162 Sum_probs=178.8
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccccchHHHHHHHHHHHHHcCCCCC--CCCccccccH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDINRSTLSATQTIIDGMKWLGLNYD--EGPFYQTKRI 80 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~l~~lGi~~d--~~~~~qS~~~ 80 (340)
-+|+|||+|||||+|++++++.++| +..|.-|.| |+|.+ +++.....++. ..|-... ....-...+.
T Consensus 119 ~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G--~Q~~~l~~~~~----~~~~~~~~~~~~~~~~~~~ 192 (566)
T TIGR00456 119 SSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG--RQFGLLALGVE----KFGNEKLNEAVKKPDHGLE 192 (566)
T ss_pred cCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH--HHHHHHHHHHH----HhCCccccCcccCChHHHH
Confidence 4799999999999999999999999 678999998 77888 66666666553 2332210 1111123345
Q ss_pred HHHHHHHHHHHHcCC------cccc--------------cCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2377 81 NRYFEIINYLLSNDY------AYYC--------------YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPIN 140 (340)
Q Consensus 81 ~~y~~~~~~L~~~G~------aY~c--------------~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~ 140 (340)
..|.++.+.+.+.-. .+.+ .+....++.+++.-...| ..|+.+.++. +... .+
T Consensus 193 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~--V~fD~~~~E~-e~~~----~~ 265 (566)
T TIGR00456 193 GFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLN--IHFDSFVWEG-ESVK----NG 265 (566)
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC--Cceeeeeccc-cccc----cc
Confidence 567666665532211 0000 011111222233333444 4555554332 2111 11
Q ss_pred -CCceE-EEeCCCCCceeEEeccceeeeecCCCC----CCeEEEecCCCcchhhHHH---hhhhcCCCcEE--EeCCCCC
Q psy2377 141 -RKPVI-RFKNPLYGNITWNDLIKGKITISNKEL----DDLVIVRADGIPTYNFCAA---IDDWDMKITHV--IRGDDHI 209 (340)
Q Consensus 141 -~~~~~-Rl~~~~~~~~~~~D~i~G~~~~~~~~~----~DfVl~R~dG~ptY~la~v---vDD~~~githv--IrG~D~~ 209 (340)
.+.++ +|+. .+.+ ..| |+++...+.. .|.||+||||.+||...++ .+....+.+.+ |.|+||+
T Consensus 266 ~~~~v~~~L~~--~g~~-~~~---Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~ 339 (566)
T TIGR00456 266 MVPKVLEDLKE--KGLV-VED---GALWLDLTLFGDKDKDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYVWGSDHH 339 (566)
T ss_pred cHHHHHHHHHH--CCCE-EEc---CCEEEEcccccCCCCCeEEEECCCCceechhhHHHHHHHHhcCCCEEEEEecCcHH
Confidence 11222 2332 1322 233 6666654433 4899999999999965554 56666688888 6899999
Q ss_pred CcHHHHHHHHHHhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCC--ccccCHH
Q psy2377 210 NNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGN--EEIFSIK 285 (340)
Q Consensus 210 ~~t~~q~~l~~aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~--~~~~~~~ 285 (340)
.+.++...++++||++.| ...|++.-+. ++.|||||.|+ +++.+++++- .+.....+..-+-...+ .+.+..
T Consensus 340 ~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~~kmSkr~Gn~V~~~dll~~~--~~ra~~~i~~~~~~~~~~~~~~vg~- 415 (566)
T TIGR00456 340 LHIAQFFAILEKLGFYKKKELIHLNFGMV-PLGSMKTRRGNVISLDNLLDEA--SKRAGNVITIKNDLEEEDVADAVGI- 415 (566)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEEEE-ECCCCCccCCceeeHHHHHHHH--HHHHHHHHHhcCCccHHHHHHHhcc-
Confidence 999999999999999777 5788875432 46799999996 6787776541 11222222211100000 000111
Q ss_pred HHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHHHHhHHHHHHhcC
Q psy2377 286 QFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 286 ~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
+.+.+|. ++..+.++..||++++..+|++--- -..+...|+...+.+.+
T Consensus 416 dAvRy~~-L~~~~~~d~~Fd~d~~~~~~~n~~~--yiqYa~aR~~SIlrK~~ 464 (566)
T TIGR00456 416 GAVRYFD-LSQNRETHYVFDWDAMLSFEGNTAP--YIQYAHARICSILRKAD 464 (566)
T ss_pred cceeeHH-hhcCCCCCceecHHHHhccCCCCch--hHHHHHHHHHHHHHhcc
Confidence 3455677 8878888899999987766542211 34455666666666553
No 45
>KOG2007|consensus
Probab=99.79 E-value=2.8e-19 Score=173.07 Aligned_cols=229 Identities=19% Similarity=0.217 Sum_probs=163.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH---HcCC---cEEEEecCCccc---cch---------------HHHHHHHHHHHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR---HFNG---IFILRIEDTDIN---RST---------------LSATQTIIDGMKW 64 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar---~~~G---~~vlRieD~d~~---r~~---------------~~~~~~i~~~l~~ 64 (340)
.|+.+..-||||||+++-.|++-| .+-| .||..|.|+|++ |.. .-|++++..|+..
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~ 141 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAA 141 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998 2444 588899999975 221 1366899999999
Q ss_pred cCCCCCCCCccccccHHHHHHHHHHHHHcCCcccccCCH-HHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q psy2377 65 LGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSV-EEIESFRKKQRSFGEKP-RYNRIWRPEPGKILPSIPINRK 142 (340)
Q Consensus 65 lGi~~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~-~~l~~~~~~~~~~~~~~-~Y~g~cr~~~~~~e~~~~~~~~ 142 (340)
|.+-++....+.|++++.+.+++++++++|.||....+. -++. +.+ .| |.|... . +
T Consensus 142 LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~----------kf~~~Y-gKL~G~-~-~--------- 199 (586)
T KOG2007|consen 142 LNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVD----------KFPHSY-GKLVGQ-R-K--------- 199 (586)
T ss_pred hCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecc----------cccchh-hhhcCc-h-h---------
Confidence 998877667899999999999999999999999742221 0011 011 13 333221 0 0
Q ss_pred ceEEEeCCCCCceeEEeccceeee-ecCCCCCCeEEEecC-------------CCcchhhHHHhh-hhcCCCcEEEe--C
Q psy2377 143 PVIRFKNPLYGNITWNDLIKGKIT-ISNKELDDLVIVRAD-------------GIPTYNFCAAID-DWDMKITHVIR--G 205 (340)
Q Consensus 143 ~~~Rl~~~~~~~~~~~D~i~G~~~-~~~~~~~DfVl~R~d-------------G~ptY~la~vvD-D~~~githvIr--G 205 (340)
. +..+ + |... ..+.+..||+|||+. |.|+||+.|++. -...|-+..|. |
T Consensus 200 -~--~~~g-E----------g~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG 265 (586)
T KOG2007|consen 200 -N--LQEG-E----------GVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGG 265 (586)
T ss_pred -h--cccC-c----------CccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCc
Confidence 0 1111 1 1111 234567899999973 899999999863 23457776675 6
Q ss_pred CCC----CCcHHHHHHHHHHhCCC-CCc-eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy2377 206 DDH----INNTPRQINILKALGVT-LPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG 277 (340)
Q Consensus 206 ~D~----~~~t~~q~~l~~aLg~~-~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~ 277 (340)
.|+ |+|...|... ++.-+ ... |.|..-| +.+|.||||+.++ +||++.++. |+|.++|.+++.--|..+
T Consensus 266 ~DL~FPHHeNEiAQ~eA--~~~~~~wVnYflHtGhL-~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~~~wr~~ 340 (586)
T KOG2007|consen 266 IDLAFPHHENEIAQSEA--AFDDSQWVNYFLHTGHL-TINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLLHQWRSP 340 (586)
T ss_pred ccccCCCcccHHHHHHH--HhcCCccceeEEEcCee-eeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHHHHhcCc
Confidence 664 8899999764 23322 233 5666665 6689999999886 899999986 999999999999888653
No 46
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.73 E-value=9.6e-18 Score=162.49 Aligned_cols=279 Identities=18% Similarity=0.204 Sum_probs=145.9
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccccchHHHHHHHHHHHHHcCCCCCCC-----Ccccc-
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDINRSTLSATQTIIDGMKWLGLNYDEG-----PFYQT- 77 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~-----~~~qS- 77 (340)
+|||||+||+||+|++++++.+|| +..|+-|.| ++|.+ +++.....++......- +..... ..|+.
T Consensus 28 SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G--~Q~~~l~~~~~~~~~~~-~~~~~~~~~l~~~Y~~~ 104 (354)
T PF00750_consen 28 SPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWG--TQIGLLAASYKKFGDEE-LLEEDPIKHLEDLYVGA 104 (354)
T ss_dssp --BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTS--HHHHHHHHHHHHHHHHH-TSHSSCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCC--HHHHHHHHHHHhhhhhh-hcccccccchhhhhhhh
Confidence 699999999999999999999999 789999999 77888 66655555554332210 010000 00111
Q ss_pred --------------ccH-HHHHHHHHHHHHcCCcc-cccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2377 78 --------------KRI-NRYFEIINYLLSNDYAY-YCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINR 141 (340)
Q Consensus 78 --------------~~~-~~y~~~~~~L~~~G~aY-~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~ 141 (340)
+.+ +.-.++..+| +.|... .-.+...-++..++.....+ ..|+-+..+. .... ....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-e~gd~~~~~~~~~~~~~~~k~~l~~l~--i~fDv~~~E~-Es~~---~~~v 177 (354)
T PF00750_consen 105 NKRDEADEIAEKEPEELEEEAREYLKKL-EQGDEEFRELWQKYILEWSKETLQRLY--IRFDVWFDES-ESFY---SGKV 177 (354)
T ss_dssp HHHHHHTTCSSGCCCCHHHHHHHHHHHH-HHCCTTHHHHHHHHHHHHHHHHHHHTT-----SEEEEHC-HHHH---TTHH
T ss_pred hhhhhhhhhccccccccccccceeeeec-ccccHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCcccc-hhhh---hhHH
Confidence 000 1111222222 222211 10111001111122122222 3444333110 0000 0001
Q ss_pred CceE-EEeCCCCCceeEEeccceeeeecCCC---CCCeEEEecCCCcchhhHHH---hhhh-cCCCcEE--EeCCCCCCc
Q psy2377 142 KPVI-RFKNPLYGNITWNDLIKGKITISNKE---LDDLVIVRADGIPTYNFCAA---IDDW-DMKITHV--IRGDDHINN 211 (340)
Q Consensus 142 ~~~~-Rl~~~~~~~~~~~D~i~G~~~~~~~~---~~DfVl~R~dG~ptY~la~v---vDD~-~~githv--IrG~D~~~~ 211 (340)
+.++ +|+. .|.+...| |..++..+. ..|+||+||||.+||...++ .+.. ..+.+.+ |-|+||...
T Consensus 178 ~~vl~~L~e--~g~~~~~d---Ga~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~h 252 (354)
T PF00750_consen 178 DEVLERLKE--KGLLYESD---GALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGH 252 (354)
T ss_dssp HHHHHHHHC--TTTEEEET---TEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHH
T ss_pred HHHHHHHHh--CCcEEecC---CcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhccccEEEEecCchhhH
Confidence 1122 2333 24444444 788877553 36899999999999975554 5666 5678877 679999988
Q ss_pred HHHHHHHHHHhCCCC--CceEEec--ceecCCCc-eecccCCC-CChHHHHHcCCCHHHHHHHHHHh-CCCCCCcc----
Q psy2377 212 TPRQINILKALGVTL--PFYGHLP--MVIDSNKV-KISKRKEA-TDIMYYKKKGFLPEAILNYLARL-GWSHGNEE---- 280 (340)
Q Consensus 212 t~~q~~l~~aLg~~~--p~~~H~p--ll~~~~g~-KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l-G~~~~~~~---- 280 (340)
-.+-..++++||+.+ ....|++ +++..+|+ |||||+|. +++++|+++.. +........- .++..+.+
T Consensus 253 f~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~--~~a~~~~~~~~~~~~~~~~~~a~ 330 (354)
T PF00750_consen 253 FKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAV--ERALEIMEKNPDLSEEEREEIAE 330 (354)
T ss_dssp HHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHH--HHHHHHHHHHTTCTHCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHH--HHHHHHHhcccCCChhhHHHHHH
Confidence 888889999999843 4677875 55567887 99999995 89999998521 1112211111 11111100
Q ss_pred ccCHHHHHHhhcccCcCCCCCccccH
Q psy2377 281 IFSIKQFCYWFNDCKYLSKSPAQFNL 306 (340)
Q Consensus 281 ~~~~~~~~~~f~~~~~~~~~~~~~d~ 306 (340)
.+.+ .++.+++ ++.-+.++..|||
T Consensus 331 ~vg~-~Ai~y~~-l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 331 QVGV-GAIRYFD-LSQKRNKDYVFDW 354 (354)
T ss_dssp HHHH-HHHHHHH-HSS-TTS-EEEEC
T ss_pred Hhhh-hHHHHHH-HhccCCCCceecC
Confidence 1111 2455677 8888888888885
No 47
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.70 E-value=2.5e-16 Score=150.21 Aligned_cols=240 Identities=19% Similarity=0.160 Sum_probs=144.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc--------------------------cchHH
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN--------------------------RSTLS 53 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~--------------------------r~~~~ 53 (340)
++==+|+|||.+||||+++.++.|+++| ...|+.|.. +|+.+.+ ...+.
T Consensus 4 i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
T cd00668 4 VTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEE 83 (312)
T ss_pred EecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHH
Confidence 3444799999999999999999999999 567775544 4444421 12466
Q ss_pred HHHHHHHHHHHcCCCCC--CCC-ccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2377 54 ATQTIIDGMKWLGLNYD--EGP-FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEP 130 (340)
Q Consensus 54 ~~~~i~~~l~~lGi~~d--~~~-~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~ 130 (340)
+.+.+.++|+.||+..| ... ....++.+...++.++|.++|++|.-.-. + +.. ..-...| +..++.
T Consensus 84 ~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~---v---~~~---~~~f~~~-~~l~~~- 152 (312)
T cd00668 84 MSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHP---V---RIT---EQWFFDM-PKFKEK- 152 (312)
T ss_pred HHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecce---e---Eee---eeEEEEc-HHHHHH-
Confidence 78888999999999666 422 22335788999999999999999972110 0 000 0000000 000000
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEecC----CCcchhhHH----H-----hhhhcC
Q psy2377 131 GKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRAD----GIPTYNFCA----A-----IDDWDM 197 (340)
Q Consensus 131 ~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~d----G~ptY~la~----v-----vDD~~~ 197 (340)
-.+.. ..+ .. .|+ ..+..+..--.+..|+.|.|.. +.|.+++-| + .-.+..
T Consensus 153 ~~~~~--~~~-----~~-~p~--------~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~ 216 (312)
T cd00668 153 LLKAL--RRG-----KI-VPE--------HVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPE 216 (312)
T ss_pred HHHHH--hcC-----Cc-CCh--------HHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccchhhccHHHHHHcCCCc
Confidence 00000 000 00 010 0000000000122488888853 457777777 2 111110
Q ss_pred ---------CCcEEEeCCCCC-CcHHHHHHHHHHhCCC-CC-c-eEEecceecCCCceecccCCC-CChHHHHHcCCCHH
Q psy2377 198 ---------KITHVIRGDDHI-NNTPRQINILKALGVT-LP-F-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPE 263 (340)
Q Consensus 198 ---------githvIrG~D~~-~~t~~q~~l~~aLg~~-~p-~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~ 263 (340)
..+--+-|.|++ .......+...+++.. +| . +.| .++...+|+|||||.|+ +++.++++. +.++
T Consensus 217 ~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~d 294 (312)
T cd00668 217 EKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEK-YGAD 294 (312)
T ss_pred cchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHH-cCcH
Confidence 233335699998 5555556666677755 44 3 455 88877777999999996 899999987 9999
Q ss_pred HHHHHHHHhC
Q psy2377 264 AILNYLARLG 273 (340)
Q Consensus 264 al~~~l~~lG 273 (340)
++|.||+..+
T Consensus 295 a~R~~l~~~~ 304 (312)
T cd00668 295 ALRYYLTSLA 304 (312)
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 48
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=5.4e-16 Score=157.25 Aligned_cols=257 Identities=17% Similarity=0.091 Sum_probs=150.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEE---EEecCCccc-------------cchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFI---LRIEDTDIN-------------RSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~v---lRieD~d~~-------------r~~~~~~~~i~~~l~~l 65 (340)
+++==.|+|||.+||||+|+++..|+++| +..|.-| .-++|.|.+ ...+.+.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45556799999999999999999999999 4567544 446666642 34677889999999999
Q ss_pred CCCCCCCCccccc--cHHHHHHHHHHHHHcCCccc-----ccCCHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q psy2377 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY-----CYSSVEEIE-SFRKKQRSFGEKPRYNRIWRPEPGKILPSI 137 (340)
Q Consensus 66 Gi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~-~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~ 137 (340)
|+.+|.. ++.++ +.+..+++.++|.++|++|. .+|+..+-. .-++. . .+ ..+...|-. +++-
T Consensus 84 ~I~~D~~-~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l-~-~~--~p~~~~~~~--~~~~--- 153 (511)
T PRK11893 84 NISYDDF-IRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESEL-I-ED--GYRCPPTGA--PVEW--- 153 (511)
T ss_pred CCCcCCc-eeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHh-c-CC--CCCCCCCCC--cceE---
Confidence 9999863 33443 88999999999999999995 344433110 00000 0 00 011122221 1111
Q ss_pred CCCCCceEEEeCCCCCceeE---------Eeccceee-eecCCCCCCeEEEecCCC-----c--------ch-------h
Q psy2377 138 PINRKPVIRFKNPLYGNITW---------NDLIKGKI-TISNKELDDLVIVRADGI-----P--------TY-------N 187 (340)
Q Consensus 138 ~~~~~~~~Rl~~~~~~~~~~---------~D~i~G~~-~~~~~~~~DfVl~R~dG~-----p--------tY-------~ 187 (340)
.......+++....+....+ .+..+..+ .+-...+.|+.|+|.+.. | +| .
T Consensus 154 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~ 233 (511)
T PRK11893 154 VEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYL 233 (511)
T ss_pred EecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHH
Confidence 01112233332210000000 00000000 000124689999993321 2 22 1
Q ss_pred hH------HH-----hhhhcCCCcEEEeCCCCCCc-HHHHHHHHHHhCCCCCc-eEEecceecCCCceecccCCC-CChH
Q psy2377 188 FC------AA-----IDDWDMKITHVIRGDDHINN-TPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIM 253 (340)
Q Consensus 188 la------~v-----vDD~~~githvIrG~D~~~~-t~~q~~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~ 253 (340)
-+ +. ..++. ..+..+-|.|++.. +....++..++|.+.|. +.|..++. .+|+|||||.|+ +++.
T Consensus 234 s~~~~p~~~~~~~~~~~~~~-~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G~KMSKS~GN~i~~~ 311 (511)
T PRK11893 234 TALGYPDDEELLAELFNKYW-PADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDGEKMSKSLGNVIDPF 311 (511)
T ss_pred hHhccccccccchhHHHhcC-CCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECCeeecccCCcEEcHH
Confidence 11 00 01111 12223458998652 22233444566877784 55666665 489999999996 7999
Q ss_pred HHHHcCCCHHHHHHHHHHhC
Q psy2377 254 YYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 254 ~l~~~G~~p~al~~~l~~lG 273 (340)
++++. +.++++|.||+..+
T Consensus 312 dll~~-~g~DalR~~ll~~~ 330 (511)
T PRK11893 312 DLVDE-YGVDAVRYFLLREI 330 (511)
T ss_pred HHHHH-cCcHHHHHHHHhcC
Confidence 99987 99999999999864
No 49
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-15 Score=154.01 Aligned_cols=269 Identities=22% Similarity=0.188 Sum_probs=161.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~l 65 (340)
++|-=-|+|||.+||||+++.|..|++|| +..|.-++=+..+| |+..++.+.+.+.+++++|
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999999999999999 56787666655444 4456788889999999999
Q ss_pred CCCCCCCCcccc-ccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhcCCCCCC-CCCCC-----------
Q psy2377 66 GLNYDEGPFYQT-KRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRY-NRIWR----------- 127 (340)
Q Consensus 66 Gi~~d~~~~~qS-~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~~~~~~~~~~~~~~~Y-~g~cr----------- 127 (340)
+|++|......+ ++.+.-+++.++|.++|..|. -+|.+.+.- .+.+| .|+|.
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~f----------l~dr~v~g~cp~cg~~~arGD~ 157 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERF----------LPDRYVEGTCPKCGGEDARGDQ 157 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccccc----------ccchheeccCCCcCccccCcch
Confidence 999997544444 477889999999999999984 244443321 01111 22222
Q ss_pred ------CCCCCCCCCCCCCCCceEEEeC-C--CCCceeEE------eccc----eee-------------eecCCCCCCe
Q psy2377 128 ------PEPGKILPSIPINRKPVIRFKN-P--LYGNITWN------DLIK----GKI-------------TISNKELDDL 175 (340)
Q Consensus 128 ------~~~~~~e~~~~~~~~~~~Rl~~-~--~~~~~~~~------D~i~----G~~-------------~~~~~~~~Df 175 (340)
.+ .+.+. +.+.++.-.. | ++....|- |.+. +.. .+-...+.|+
T Consensus 158 Ce~Cg~~~-~P~~l----~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~ 232 (558)
T COG0143 158 CENCGRTL-DPTEL----INPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDL 232 (558)
T ss_pred hhhccCcC-Cchhc----CCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCccc
Confidence 12 22220 1111111100 0 00111121 2111 110 0112347999
Q ss_pred EEEecCC-----------C---------cchhhHH----------Hhhhh----cCCCcEEEeCCCCCCcHHHH-HHHHH
Q psy2377 176 VIVRADG-----------I---------PTYNFCA----------AIDDW----DMKITHVIRGDDHINNTPRQ-INILK 220 (340)
Q Consensus 176 Vl~R~dG-----------~---------ptY~la~----------vvDD~----~~githvIrG~D~~~~t~~q-~~l~~ 220 (340)
.|.|.+. - ..|--+. .-+++ .-.+-|+| |.|.+.--... =+++.
T Consensus 233 ~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfI-GKDii~FHav~wPamL~ 311 (558)
T COG0143 233 SITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFI-GKDIIRFHAVYWPAMLM 311 (558)
T ss_pred ceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEe-ccccCcchhhHHHHHHH
Confidence 9999541 1 1221111 11122 12234666 88875322111 24456
Q ss_pred HhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHh
Q psy2377 221 ALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYW 290 (340)
Q Consensus 221 aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~ 290 (340)
+.|.+.|.-.+..-.++.+|+||||+.|+ +...++.+. ++++++|+||+.-.- ......+|.+++++.
T Consensus 312 ~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p-~~~D~dFs~~~f~~r 380 (558)
T COG0143 312 AAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELP-EGSDGDFSWEDFVER 380 (558)
T ss_pred hCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCC-CCCCCCCCHHHHHHH
Confidence 77888886444444445679999999997 889998887 999999999998432 222233677666554
No 50
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.67 E-value=2.5e-16 Score=133.42 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=58.1
Q ss_pred hhhHHHhhhhcCCC---cEEEeCCCCCCcHHHHHHHHHHhCCC-CCceEEecceecCCCceecccC
Q psy2377 186 YNFCAAIDDWDMKI---THVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDSNKVKISKRK 247 (340)
Q Consensus 186 Y~la~vvDD~~~gi---thvIrG~D~~~~t~~q~~l~~aLg~~-~p~~~H~pll~~~~g~KLSKR~ 247 (340)
|++.+++|+...++ +++++|.|+..+...+.++++++|.. .|.+.|.+++...+|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 99999999999999999999999875 5899999999888889999985
No 51
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.61 E-value=3.5e-14 Score=135.89 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=74.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc-------------cchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN-------------RSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~-------------r~~~~~~~~i~~~l~~l 65 (340)
++|==.|+|||.+||||+++.++.|+++| +..|.-|.- ++|.+.+ ...+.+.+.+.+++++|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45556799999999999999999999999 456765443 6666532 34678888999999999
Q ss_pred CCCCCCCCcc-ccccHHHHHHHHHHHHHcCCccc
Q psy2377 66 GLNYDEGPFY-QTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi~~d~~~~~-qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+.+|..+.. ++.+.+...+++++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999863322 22377888999999999999984
No 52
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=2.2e-14 Score=149.91 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=77.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCcc----------------ccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDI----------------NRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~----------------~r~~~~~~~~i~~~l~~l 65 (340)
++|==.|+|||.+||||+++++..|+++| +..|.-|+-+-.+|. ....+.+.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 55666789999999999999999999999 467877666555542 345688999999999999
Q ss_pred CCCCCCCCcc-ccccHHHHHHHHHHHHHcCCccc
Q psy2377 66 GLNYDEGPFY-QTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi~~d~~~~~-qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+.+|..+.. ..++.+..+++.++|.++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999863322 22588999999999999999984
No 53
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.59 E-value=2.1e-14 Score=146.43 Aligned_cols=95 Identities=22% Similarity=0.320 Sum_probs=75.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCcc-------------ccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDI-------------NRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~-------------~r~~~~~~~~i~~~l~~l 65 (340)
++|--.|+|||.+||||+++++..|+++| +..|.-|+- ++|.|. ....+.+.+.+.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 46777899999999999999999999999 467765554 555443 234678889999999999
Q ss_pred CCCCCCCCc-cccccHHHHHHHHHHHHHcCCccc
Q psy2377 66 GLNYDEGPF-YQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi~~d~~~~-~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+.+|..+. ..+.+.+...++.++|.++|.+|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999985332 233378889999999999999984
No 54
>PLN02224 methionine-tRNA ligase
Probab=99.59 E-value=1.9e-14 Score=147.88 Aligned_cols=256 Identities=17% Similarity=0.099 Sum_probs=146.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCc-------------cccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTD-------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d-------------~~r~~~~~~~~i~~~l~~l 65 (340)
+++=-.|+|||.+||||+++++..|+++| +..|.-|+. +||.+ +.....++.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 34555789999999999999999999999 467765555 44444 2234567778888899999
Q ss_pred CCCCCCCCccccc--cHHHHHHHHHHHHHcCCccc-----ccCCHHHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q psy2377 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY-----CYSSVEEI--ESFRKKQRSFGEKPRYNRIWRPEPGKILPS 136 (340)
Q Consensus 66 Gi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l--~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~ 136 (340)
||++|..+ +.++ +.+..+++..+|.++|++|. -+|.+.+. .+ .+ ..+ +.. +.+... +++-
T Consensus 152 ~I~~D~f~-rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~-~~---l~~--~~~-~~~~~~-~~~~-- 220 (616)
T PLN02224 152 DIAYDKFI-RTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDE-KE---LLE--NNC-CPVHQM-PCVA-- 220 (616)
T ss_pred CCCCCcCe-eCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCH-HH---HcC--CCC-CCCCCC-cceE--
Confidence 99999643 4343 77888999999999999985 13333221 11 00 000 111 111111 1111
Q ss_pred CCCCCCceEEEeCCCCCceeEEe----cc-----ceee-eecCCCCCCeEEEecC---CCc-----------------ch
Q psy2377 137 IPINRKPVIRFKNPLYGNITWND----LI-----KGKI-TISNKELDDLVIVRAD---GIP-----------------TY 186 (340)
Q Consensus 137 ~~~~~~~~~Rl~~~~~~~~~~~D----~i-----~G~~-~~~~~~~~DfVl~R~d---G~p-----------------tY 186 (340)
.....+.+||....+....|.+ .+ +..+ .+-...+.|+.|-|.. |.| .|
T Consensus 221 -~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Y 299 (616)
T PLN02224 221 -RKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGY 299 (616)
T ss_pred -EecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHH
Confidence 0112333343321100000000 00 0000 0112346788888842 322 12
Q ss_pred hhHHHh--hh--h-------cCCCcEEEeCCCCCCc-HHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChH
Q psy2377 187 NFCAAI--DD--W-------DMKITHVIRGDDHINN-TPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIM 253 (340)
Q Consensus 187 ~la~vv--DD--~-------~~githvIrG~D~~~~-t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~ 253 (340)
--++-- ++ . .-..-|++ |.|.+.. +...-+++.++|++.|.-..+.-.++.+|+||||+.|+ ++..
T Consensus 300 ls~~~~~~~~~~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~ 378 (616)
T PLN02224 300 ISALTEDNKQQNLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPF 378 (616)
T ss_pred HHHhcccccccccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCccCCHH
Confidence 111110 00 0 01123545 9998753 22333445567888885333322357799999999996 7889
Q ss_pred HHHHcCCCHHHHHHHHHHhC
Q psy2377 254 YYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 254 ~l~~~G~~p~al~~~l~~lG 273 (340)
++++. ++++++|.||+..+
T Consensus 379 e~l~~-ygaD~~R~yLl~~~ 397 (616)
T PLN02224 379 ELVQK-FGPDAVRYFFLREV 397 (616)
T ss_pred HHHHH-cCcHHHHHHHHhcC
Confidence 99987 99999999999864
No 55
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=1.5e-14 Score=150.68 Aligned_cols=256 Identities=20% Similarity=0.132 Sum_probs=147.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCcc-------------ccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDI-------------NRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~-------------~r~~~~~~~~i~~~l~~l 65 (340)
++|==.|+|||++||||+++++..|+++| +..|.-++- .||.+. ....+.+.+.|.++|++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 56777899999999999999999999999 467765555 444432 235688899999999999
Q ss_pred CCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHH-HHHHHHHhcCCCCCCCCCCCC--CCCCCCC
Q psy2377 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIE-SFRKKQRSFGEKPRYNRIWRP--EPGKILP 135 (340)
Q Consensus 66 Gi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~-~~~~~~~~~~~~~~Y~g~cr~--~~~~~e~ 135 (340)
|+.+|... +.++ +.+..+++.++|.++|++|.- +|...+-- ..+.. .. .+.|.. . +++-
T Consensus 87 gI~~D~f~-rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l--~~------~~~c~~cg~-~~e~- 155 (648)
T PRK12267 87 DISYDKFI-RTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQL--VD------GGKCPDCGR-EVEL- 155 (648)
T ss_pred CCCCCCCe-eCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHh--cc------CCcCCCCCC-cCeE-
Confidence 99999643 4444 667889999999999999841 33322210 00000 00 033421 1 1111
Q ss_pred CCCCCCCceEEEeCCCCCceeE---------Eeccceeee--ecCCCCCCeEEEecC---CCc--------chh------
Q psy2377 136 SIPINRKPVIRFKNPLYGNITW---------NDLIKGKIT--ISNKELDDLVIVRAD---GIP--------TYN------ 187 (340)
Q Consensus 136 ~~~~~~~~~~Rl~~~~~~~~~~---------~D~i~G~~~--~~~~~~~DfVl~R~d---G~p--------tY~------ 187 (340)
.......+||....+....+ ....+..+. +-...+.|+.|-|.. |.| .|-
T Consensus 156 --~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~ 233 (648)
T PRK12267 156 --VKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALL 233 (648)
T ss_pred --EecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchH
Confidence 11223334443211100000 000011110 112236788888852 221 111
Q ss_pred --hHHH-h-h----hhc--CCCcEEEeCCCCCCc-HHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHH
Q psy2377 188 --FCAA-I-D----DWD--MKITHVIRGDDHINN-TPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYY 255 (340)
Q Consensus 188 --la~v-v-D----D~~--~githvIrG~D~~~~-t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l 255 (340)
++.. . + ++. -..+..+-|.|.+.. +-..-+++.++|+++|.-..+.-.+..+|+||||+.|+ ++..++
T Consensus 234 ~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~ 313 (648)
T PRK12267 234 NYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEEL 313 (648)
T ss_pred HHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEECCceecccCCcccCHHHH
Confidence 1111 0 0 000 011222348888642 22222446678988886444443334579999999996 788899
Q ss_pred HHcCCCHHHHHHHHHHhC
Q psy2377 256 KKKGFLPEAILNYLARLG 273 (340)
Q Consensus 256 ~~~G~~p~al~~~l~~lG 273 (340)
++. ++++++|.||+.-+
T Consensus 314 l~~-ygaD~lR~~L~~~~ 330 (648)
T PRK12267 314 VDR-YGLDALRYYLLREV 330 (648)
T ss_pred HHH-cCCcHHHHHHHhcC
Confidence 976 99999999999743
No 56
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.55 E-value=6.8e-14 Score=147.77 Aligned_cols=282 Identities=15% Similarity=0.089 Sum_probs=155.1
Q ss_pred eEEEeCCCCCCcCchhHHHH-HHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRT-ALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKW 64 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rt-al~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~ 64 (340)
++|==.|+|||.+||||+++ ++..|++|| +..|.-++-+..+| |+...+.+.+.+.+.+++
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56777899999999999996 677999999 46787776655554 334467777888888999
Q ss_pred cCCCCCCCCccccc-cHHHHHHHHHHHHHcCCccc-----ccCCHHHHH-HHHHHHHh-----cCCCCCCCCC---CCC-
Q psy2377 65 LGLNYDEGPFYQTK-RINRYFEIINYLLSNDYAYY-----CYSSVEEIE-SFRKKQRS-----FGEKPRYNRI---WRP- 128 (340)
Q Consensus 65 lGi~~d~~~~~qS~-~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~-~~~~~~~~-----~~~~~~Y~g~---cr~- 128 (340)
+||++|....+.++ +.+..+++..+|.++|..|. -+|.+.+.- .-+..... +|....+... |-.
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~ 179 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKL 179 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhcccc
Confidence 99999974333333 67888899999999999884 234332210 00100000 0100111111 211
Q ss_pred CCCCCCCCC----CCCCCce--------EEEeCCCCCceeEEe--ccceee---------eecCCCCCCeEEEec-----
Q psy2377 129 EPGKILPSI----PINRKPV--------IRFKNPLYGNITWND--LIKGKI---------TISNKELDDLVIVRA----- 180 (340)
Q Consensus 129 ~~~~~e~~~----~~~~~~~--------~Rl~~~~~~~~~~~D--~i~G~~---------~~~~~~~~DfVl~R~----- 180 (340)
. .+.+... ..|.+.. +||....+....|.+ .+.+.. .+-...+.|..|-|.
T Consensus 180 ~-~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGi 258 (801)
T PLN02610 180 L-NPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGV 258 (801)
T ss_pred C-ChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcc
Confidence 1 1111100 1122221 122110000000000 011110 011234688888884
Q ss_pred ----CC---C---------cchhhHHH------hhhhcC---CC--cEEEeCCCCCC-cHHHHHHHHHHhCC--CCCceE
Q psy2377 181 ----DG---I---------PTYNFCAA------IDDWDM---KI--THVIRGDDHIN-NTPRQINILKALGV--TLPFYG 230 (340)
Q Consensus 181 ----dG---~---------ptY~la~v------vDD~~~---gi--thvIrG~D~~~-~t~~q~~l~~aLg~--~~p~~~ 230 (340)
|| . ..| ++.. -.++.. .+ .|+| |.|.+. ++-.--+++.++|. +.|.-.
T Consensus 259 pvP~~~~~~~v~YVWfDAl~~Y-is~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi~~fH~i~wPa~L~a~g~~~~~p~~i 336 (801)
T PLN02610 259 PVPLEKYKDKVFYVWFDAPIGY-VSITACYTPEWEKWWKNPENVELYQFM-GKDNVPFHTVMFPSTLLGTGENWTMMKTI 336 (801)
T ss_pred cCCCCCCCCcEEEEehhhHHHH-HHHHhhhhhHHHHhcCCcccceEEEEE-eeecchhHHHHHHHHHHhCCCCcCCCCEE
Confidence 12 1 123 2221 112221 12 4666 888743 22222345567784 467655
Q ss_pred EecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2377 231 HLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (340)
Q Consensus 231 H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~ 289 (340)
++.-.++.+|+||||+.|+ +...++.+.++.++++|+||+.-+- .....-||.+++++
T Consensus 337 ~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p-~~~D~dFs~~~f~~ 395 (801)
T PLN02610 337 SVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRP-EVSDTLFTWADLQA 395 (801)
T ss_pred EeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCC-CCCCCcCCHHHHHH
Confidence 5554557789999999996 7889999878999999999998642 22222355554433
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.55 E-value=2.2e-13 Score=122.96 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=59.7
Q ss_pred hhhHHHh--hhhcCC-CcEEEeCCCCCC-cHHHHHHHHHHh-CCCCCc-eEEecceecCCCceecccCCC-CChHHHHHc
Q psy2377 186 YNFCAAI--DDWDMK-ITHVIRGDDHIN-NTPRQINILKAL-GVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKK 258 (340)
Q Consensus 186 Y~la~vv--DD~~~g-ithvIrG~D~~~-~t~~q~~l~~aL-g~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~ 258 (340)
||+.|++ ..++.. ++.-.-|.||+. .....++...++ |.+.+. +.|. .+++.+|+|||||+|+ +++.++++.
T Consensus 113 Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~-~~v~~~g~KMSKs~Gn~v~~~dll~~ 191 (213)
T cd00672 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHT-GHLTIDGEKMSKSLGNFITVRDALKK 191 (213)
T ss_pred hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEE-EEEeccCcchhhcCCCccCHHHHHHH
Confidence 9999984 444432 333345889853 333333443443 554444 5666 5567899999999997 799999985
Q ss_pred CCCHHHHHHHHHHhCC
Q psy2377 259 GFLPEAILNYLARLGW 274 (340)
Q Consensus 259 G~~p~al~~~l~~lG~ 274 (340)
+.++++|.+++.-.+
T Consensus 192 -~~~da~R~~~l~~~~ 206 (213)
T cd00672 192 -YDPEVLRLALLSSHY 206 (213)
T ss_pred -cCHHHHHHHHHhCCc
Confidence 999999999986554
No 58
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=141.97 Aligned_cols=94 Identities=23% Similarity=0.259 Sum_probs=76.3
Q ss_pred eEEEeCCCCCCcCchhHHHHH-HHHHHHHH--HcCCcEEEE---ecCCccc-------------cchHHHHHHHHHHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTA-LFSWAYAR--HFNGIFILR---IEDTDIN-------------RSTLSATQTIIDGMKW 64 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rta-l~~~~~ar--~~~G~~vlR---ieD~d~~-------------r~~~~~~~~i~~~l~~ 64 (340)
++|==.|+|||.+||||+++. +..|+++| +..|.-|+. +||.+.+ .....+.+.+.+++++
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999998 99999999 467876665 4444432 2357788999999999
Q ss_pred cCCCCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 65 LGLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 65 lGi~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
||+++|.. ++.+ ++.+..+++.++|.++|++|.
T Consensus 86 l~i~~d~~-~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLF-TRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCC-cCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999863 3445 688999999999999999994
No 59
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=4.2e-13 Score=135.72 Aligned_cols=238 Identities=19% Similarity=0.195 Sum_probs=144.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCc---EEEEecCCcc-------------------------------
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGI---FILRIEDTDI------------------------------- 47 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~---~vlRieD~d~------------------------------- 47 (340)
++.--+.+|||.+||||++..+..++++| ...|. +|.--||.|+
T Consensus 25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~ 104 (510)
T PRK00750 25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC 104 (510)
T ss_pred EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence 44555678999999999999999999999 33453 5555677764
Q ss_pred -ccchHHHHHHHHHHHHHcCCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCC
Q psy2377 48 -NRSTLSATQTIIDGMKWLGLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNR 124 (340)
Q Consensus 48 -~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g 124 (340)
+...+.+.+.+.+.|+.+|+++| .+++++ +-..|.+.+...+++-... ++-|...+.... ......|.-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~d--~~~~t~~y~~g~~~~~i~~~l~~~~~i-----~~il~~~~~~~~-~~~~~P~~p 176 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEYE--FISATECYKSGRYDEAILTALENRDEI-----MEILLPYLGEER-QATYSPFLP 176 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCceE--EEehhhhhccCchHHHHHHHHHhHHHH-----HHHHHHhcCCcc-CCCeeeeee
Confidence 12345666777788999999987 344444 2235555555555432111 122222211000 000001111
Q ss_pred CCCCCCCCCCCCCCCCCCceE---EEeCCCCCceeEEec--cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCC
Q psy2377 125 IWRPEPGKILPSIPINRKPVI---RFKNPLYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKI 199 (340)
Q Consensus 125 ~cr~~~~~~e~~~~~~~~~~~---Rl~~~~~~~~~~~D~--i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~gi 199 (340)
.|.+ .|.-... -.... .+++.|.+. -.|.+...... --.-||.|---- . ...||
T Consensus 177 ic~~----------cg~~~~~~~~~~d~~-~~~v~y~~~cG~~~~~~~~~g~--~KL~Wr~dW~~r-------W-~~l~V 235 (510)
T PRK00750 177 ICPK----------CGKVLTTPVISYDAE-AGTVTYDCECGHEGEVPVTGGH--GKLQWKVDWPMR-------W-AALGV 235 (510)
T ss_pred eCCC----------CCccceEEEEEEeCC-CCEEEEEcCCCCEEEEecCCCC--cccCCCCCcHHH-------H-HHcCC
Confidence 2221 2211111 12211 234555442 11222222211 012233331111 1 23599
Q ss_pred cEEEeCCCCCC-cHHHHHHHHH-HhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 200 THVIRGDDHIN-NTPRQINILK-ALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 200 thvIrG~D~~~-~t~~q~~l~~-aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+..+.|.||.. +......+++ +||+++|...|.+++...+|+|||||+|+ +++.++++. ++|+++|.|+..
T Consensus 236 d~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~l~~ 309 (510)
T PRK00750 236 DFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFMFA 309 (510)
T ss_pred CEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHHHHh
Confidence 99999999999 9999999998 99999999899999988779999999997 789999976 999999988774
No 60
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.53 E-value=4.2e-14 Score=136.39 Aligned_cols=91 Identities=13% Similarity=0.229 Sum_probs=70.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecC----Ccc--------------------------ccchH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IED----TDI--------------------------NRSTL 52 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD----~d~--------------------------~r~~~ 52 (340)
=+|+|||.+||||+++.++.|+++| ...|+.|+- +|| ++. ....+
T Consensus 8 ~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
T cd00818 8 GPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFAL 87 (338)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHH
Confidence 3799999999999999999999999 467766544 444 211 12235
Q ss_pred HHHHHHHHHHHHcCC--CCCCCC-ccccccHHHHHHHHHHHHHcCCccc
Q psy2377 53 SATQTIIDGMKWLGL--NYDEGP-FYQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 53 ~~~~~i~~~l~~lGi--~~d~~~-~~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
.+.+.+.++++.||+ +|+... +...++.+...++..+|.++|++|.
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEec
Confidence 677888999999999 776522 2334688999999999999999996
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.52 E-value=1.7e-12 Score=125.07 Aligned_cols=238 Identities=18% Similarity=0.162 Sum_probs=142.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCc---EEEEecCCcccc------------------------------
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGI---FILRIEDTDINR------------------------------ 49 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~---~vlRieD~d~~r------------------------------ 49 (340)
+.-=+++|||.+||||++..+..++++| +..|. |+.-.||.|+-|
T Consensus 22 ~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~~ 101 (353)
T cd00674 22 VVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCES 101 (353)
T ss_pred EEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCHH
Confidence 3444788999999999999999999999 34553 555677776411
Q ss_pred chHHHHHHHHHHHHHcCCCCCCCCccccc--cHHHHHHHHHHHHH-cCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q psy2377 50 STLSATQTIIDGMKWLGLNYDEGPFYQTK--RINRYFEIINYLLS-NDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIW 126 (340)
Q Consensus 50 ~~~~~~~~i~~~l~~lGi~~d~~~~~qS~--~~~~y~~~~~~L~~-~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~c 126 (340)
..+.+.+.+.+.|+.||+++|- +++++ +-..|.+.+...++ .+.+. +-|.+.+....+ .....|.-.|
T Consensus 102 ~~d~~~~~f~~~l~~lgi~~d~--~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~-~~~~P~~p~c 172 (353)
T cd00674 102 YAEHFERPFEESLEKLGIEVEF--ISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQ-ETWYPFMPYC 172 (353)
T ss_pred HHHHHHHHHHHHHHHcCCeeee--eecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccC-CCceeeeeec
Confidence 1566777778889999999873 34443 22355555554443 33322 233332211000 0011121222
Q ss_pred CCCCCCCCCCCCCCCC--ceEEEeCCCCCceeEEec--cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEE
Q psy2377 127 RPEPGKILPSIPINRK--PVIRFKNPLYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHV 202 (340)
Q Consensus 127 r~~~~~~e~~~~~~~~--~~~Rl~~~~~~~~~~~D~--i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githv 202 (340)
.+ .|.- .++-... +.+.+.+.+. -.|.+.....+ --.-||.|----| ...||+.=
T Consensus 173 ~~----------cg~~~~~v~~~d~-~~~~v~y~c~cG~~g~~~~~~g~--~KL~Wr~dW~~rW--------~~l~Vd~E 231 (353)
T cd00674 173 EK----------CGKDTTTVEAYDA-KAGTVTYKCECGHEETVDIRTGR--GKLTWRVDWPMRW--------AILGVDFE 231 (353)
T ss_pred CC----------cCcceeEEEEEeC-CCCeEEEEcCCCCEEEEeecCCC--cccCCCCCchhhh--------hhcCCCEE
Confidence 21 1211 1111211 1234445431 12222222111 0122333211111 23588887
Q ss_pred EeCCCCCCc---HHHHHHHHH-HhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 203 IRGDDHINN---TPRQINILK-ALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 203 IrG~D~~~~---t~~q~~l~~-aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
+-|.||..+ ...-..+++ +||.++|......++...+|+|||||+|+ +++.++++. +.|+++|.+++...
T Consensus 232 ~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~~~l~~~ 306 (353)
T cd00674 232 PFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYARRK 306 (353)
T ss_pred eeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHHHHHhCC
Confidence 889999877 888888888 99999896666677777777899999996 899999987 99999999998755
No 62
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.52 E-value=2.3e-13 Score=133.31 Aligned_cols=94 Identities=21% Similarity=0.180 Sum_probs=69.3
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc--------------------------------cc
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN--------------------------------RS 50 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~--------------------------------r~ 50 (340)
++==.|+|||.|||||+++++..|+++| ...|+.|+.+-.+|.- ..
T Consensus 5 i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
T cd00817 5 IDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEW 84 (382)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHH
Confidence 3344799999999999999999999999 4678777664433320 12
Q ss_pred hHHHHHHHHHHHHHcCCCCC--CCC-ccccccHHHHHHHHHHHHHcCCccc
Q psy2377 51 TLSATQTIIDGMKWLGLNYD--EGP-FYQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 51 ~~~~~~~i~~~l~~lGi~~d--~~~-~~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
.+.+.+.+.++++.||+..| ... +...++.+....+..+|.++|++|.
T Consensus 85 ~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 85 KEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35677888999999998544 532 2222366777888899999999986
No 63
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.52 E-value=1.7e-14 Score=141.47 Aligned_cols=277 Identities=24% Similarity=0.241 Sum_probs=143.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCC----------------ccccchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDT----------------DINRSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~----------------d~~r~~~~~~~~i~~~l~~lG 66 (340)
+|==.|+|||.|||||+.+++.+|++|| +..|.-++-+..+ +|+...+.+.+.|.+.++++|
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4555699999999999999999999999 4677766654433 344567888899999999999
Q ss_pred CCCCCCCcccc-ccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhcCCCCC------CCCCCCC----CC
Q psy2377 67 LNYDEGPFYQT-KRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPR------YNRIWRP----EP 130 (340)
Q Consensus 67 i~~d~~~~~qS-~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~~~~~~~~~~~~~~~------Y~g~cr~----~~ 130 (340)
|++|......+ .+.+..+++.++|.++|..|. -+|...+- +..+..-.|.-|. +...|-+ .
T Consensus 83 I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~--fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~- 159 (391)
T PF09334_consen 83 ISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCER--FLPESFVEGTCPYCGSDKARGDQCENCGRPL- 159 (391)
T ss_dssp ---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTE--EE-GGGETCEETTT--SSCTTTEETTTSSBE-
T ss_pred CCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCc--ccccceeeccccCcCccccCCCcccCCCCCc-
Confidence 99996432233 366778999999999999884 13332221 0000000010000 0011111 1
Q ss_pred CCCCCC----CCCCCCceEE------EeCCCCCceeEEecc----cee-----------e-eecCCCCCCeEEEecC--C
Q psy2377 131 GKILPS----IPINRKPVIR------FKNPLYGNITWNDLI----KGK-----------I-TISNKELDDLVIVRAD--G 182 (340)
Q Consensus 131 ~~~e~~----~~~~~~~~~R------l~~~~~~~~~~~D~i----~G~-----------~-~~~~~~~~DfVl~R~d--G 182 (340)
.+++.. ...|.+..+| |+... |.|.+ ... + .+-...+.|+.|-|.- |
T Consensus 160 ~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~-----~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WG 234 (391)
T PF09334_consen 160 EPEELINPVCKICGSPPEVREEENYFFKLSK-----FRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWG 234 (391)
T ss_dssp ECCCSECEEETTTS-B-EEEEEEEEEE-GGG-----GHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSS
T ss_pred ccccccCCccccccccCccccceEEEEehHH-----hHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCc
Confidence 111110 0122222222 22211 11111 111 0 0112346888888642 2
Q ss_pred --------CcchhhHHH-----------h--------------hhhcCCCcEEEeCCCCCC-cHHHHHHHHHHhCCCCCc
Q psy2377 183 --------IPTYNFCAA-----------I--------------DDWDMKITHVIRGDDHIN-NTPRQINILKALGVTLPF 228 (340)
Q Consensus 183 --------~ptY~la~v-----------v--------------DD~~~githvIrG~D~~~-~t~~q~~l~~aLg~~~p~ 228 (340)
...|-.-.+ . +|..-.+.|+| |.|.+. .+...-+++.|+|++.|.
T Consensus 235 I~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~ 313 (391)
T PF09334_consen 235 IPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPR 313 (391)
T ss_dssp EEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---S
T ss_pred ceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCC
Confidence 112221111 1 11112334666 998842 222233556678999886
Q ss_pred eEEecceecCCCceecccCC-CCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhc
Q psy2377 229 YGHLPMVIDSNKVKISKRKE-ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN 292 (340)
Q Consensus 229 ~~H~pll~~~~g~KLSKR~g-~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~ 292 (340)
-..+.-.+..+|+||||+.| +++..++++. ++++++|.||+..+-... ..-++.+++++.++
T Consensus 314 ~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~~~~-d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 314 RIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGPEGQ-DSDFSWEDFIERVN 376 (391)
T ss_dssp EEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSSTTS--EEE-HHHHHHHHH
T ss_pred EEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcCCCC-CCCCCHHHHHHHHH
Confidence 44444344457999999999 5899999988 999999999999773222 23367777777654
No 64
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.49 E-value=1.8e-12 Score=121.72 Aligned_cols=242 Identities=17% Similarity=0.169 Sum_probs=159.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCC-------ccccchHHHHHHHHHHHHHcCCCCCCC-CccccccHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT-------DINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINR 82 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~-------d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~~ 82 (340)
.|||.|||||+.+|+.+|...+..+...++.|.|. +..++..++..++..++.++|++|+.. +++||+..+.
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~ 86 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPEH 86 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHHH
Confidence 48999999999999999999998888888888887 567888999999999999999999754 5779986532
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
.+ ....+.|.|+..+++.. ..| .+. .+...
T Consensus 87 -~~-------l~~~l~~~~~~~~l~r~----------~~f----k~~-----------------~~~~~----------- 116 (280)
T cd00806 87 -YE-------LAWLLSCVVTFGELERM----------TGF----KDK-----------------SAQGE----------- 116 (280)
T ss_pred -HH-------HHHHHhCcCCHHHHHhc----------cch----hhh-----------------hccCC-----------
Confidence 22 23347899998887532 112 110 00000
Q ss_pred eeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCceEEe--cc
Q psy2377 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGHL--PM 234 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~~~H~--pl 234 (340)
+. +-|..+|-+--+.|=...+.++|..|.|...+...-..+.+.++ ++.|...|. ++
T Consensus 117 ------~~---------~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~ 181 (280)
T cd00806 117 ------SV---------NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAF 181 (280)
T ss_pred ------CC---------cchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCc
Confidence 00 11444554444444445567899889999998888888999999 788988887 88
Q ss_pred eecCCC--ceecccCC--CCChHHHHHcCCCHHHHHHHHHHhCCCC---------CCccccCHHHHHHhhcccCcCCCCC
Q psy2377 235 VIDSNK--VKISKRKE--ATDIMYYKKKGFLPEAILNYLARLGWSH---------GNEEIFSIKQFCYWFNDCKYLSKSP 301 (340)
Q Consensus 235 l~~~~g--~KLSKR~g--~~~l~~l~~~G~~p~al~~~l~~lG~~~---------~~~~~~~~~~~~~~f~~~~~~~~~~ 301 (340)
|.+-+| .||||+.+ ++.|. -+|+.++.-+...=.++ ++.+.-.+-++...|.
T Consensus 182 i~~l~g~~~KMSKS~~~~~I~L~------d~~~~i~~KI~~a~td~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 246 (280)
T cd00806 182 LPGLQGPSKKMSKSDPNNAIFLT------DSPKEIKKKIMKAATDGGRTEHRRDGGGPGVSNLVEIYSAFF--------- 246 (280)
T ss_pred cccCCCCCCcccCCCCCCeEEee------CCHHHHHHHHHhccCCCCCceecCCCCCCCcChHHHHHHHHh---------
Confidence 888776 59999987 35554 26788877776532111 1122234444545443
Q ss_pred ccccHHHHHHHHHHHhhcCCHHHHHHhHHHHH
Q psy2377 302 AQFNLKKLEWLNNFYIKSYDDKKLLNLIQPII 333 (340)
Q Consensus 302 ~~~d~~kl~~~n~~~i~~~~~~~~~~~~~~~~ 333 (340)
.-|.+++..+....-..+...++-+.+..-+
T Consensus 247 -~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i 277 (280)
T cd00806 247 -NDDDEELEEIDEYRSGGLGYGECKKLLAEAI 277 (280)
T ss_pred -CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 1234555544333334556666655555443
No 65
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.47 E-value=2e-13 Score=130.35 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=68.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcE---EEEecCCccc-------------cchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIF---ILRIEDTDIN-------------RSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~---vlRieD~d~~-------------r~~~~~~~~i~~~l~~lG 66 (340)
+|==.|+|||.+||||+++++..|+++| +..|.- +.-++|.+.+ ...+.+.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4455799999999999999999999999 456654 4447777643 235788899999999999
Q ss_pred CCCCCCC-cccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 67 LNYDEGP-FYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 67 i~~d~~~-~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+..|-.+ +..+ ++.+..+.+..+|.++|.+|.
T Consensus 84 i~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9877322 2222 233444445569999999985
No 66
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.25 E-value=9.6e-10 Score=111.02 Aligned_cols=233 Identities=19% Similarity=0.182 Sum_probs=125.5
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCcccc------------------------------
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDINR------------------------------ 49 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~r------------------------------ 49 (340)
+.-=+-+|||.+||||++..+..+.++| ...| .+|.--||.|+-|
T Consensus 21 ~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~~s 100 (515)
T TIGR00467 21 TVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCKTS 100 (515)
T ss_pred EEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCcHH
Confidence 3444557999999999999999999999 3444 4566677775332
Q ss_pred chHHHHHHHHHHHHHcCCCCCCCCcccccc-H-HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCC---CCCC
Q psy2377 50 STLSATQTIIDGMKWLGLNYDEGPFYQTKR-I-NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP---RYNR 124 (340)
Q Consensus 50 ~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~-~-~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~---~Y~g 124 (340)
..+.+...+.+.|+.||++++ .+++++. . ..|.+.+...+++ +++|.++-..-.....+. .|.-
T Consensus 101 ~~~h~~~~~~~~l~~~gi~~e--~~s~te~Y~sG~~~~~i~~~L~~---------~~~I~~il~~~~~~~~~~~~~P~~p 169 (515)
T TIGR00467 101 YAEHFLIPFLESLPVLGINPE--FIRASKQYTSGLYASQIKIALDH---------RKEISEILNEYRTSKLEENWYPISV 169 (515)
T ss_pred HHHHHHHHHHHHHHHcCCeEE--EEEHHHhhhcCChHHHHHHHHHh---------HHHHHHHHHHhcCCccCCCceeeee
Confidence 235555666777888999774 3445541 1 2455555554432 233332211110000111 1111
Q ss_pred CCCCCCCCCCCCCCCCCC--ceEEEeCCCCCceeEEec--cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCc
Q psy2377 125 IWRPEPGKILPSIPINRK--PVIRFKNPLYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKIT 200 (340)
Q Consensus 125 ~cr~~~~~~e~~~~~~~~--~~~Rl~~~~~~~~~~~D~--i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~git 200 (340)
.|.+ +|.- .++-... +.++.|.+. -.|.+...... --.-||.|----| ...|||
T Consensus 170 ic~~----------cGrv~~~~~~~~~--~~~v~Y~c~cG~~g~~~~~~g~--~KL~WkvdW~~RW--------~~lgV~ 227 (515)
T TIGR00467 170 FCEN----------CGRDTTTVNNYDN--EYSIEYSCECGNQESVDIYTGA--IKLPWRVDWPARW--------KIEKVT 227 (515)
T ss_pred ecCC----------cCccCceEEEecC--CceEEEEcCCCCEEEEeecCCC--cccCCCCCcHhhH--------hhhCcc
Confidence 2221 1110 1111111 113444321 11222221111 0222333321111 123777
Q ss_pred EEEeCCCCCCcH----HHHHHHHHHhCCCCCceEEecce-ecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 201 HVIRGDDHINNT----PRQINILKALGVTLPFYGHLPMV-IDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 201 hvIrG~D~~~~t----~~q~~l~~aLg~~~p~~~H~pll-~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.=-.|.||+++. .+.....++||.++|...-.-++ ++.+|+|||||.|+ ++++++++. ++|+++|.+++.
T Consensus 228 ~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pdalR~~~l~ 303 (515)
T TIGR00467 228 FEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPEITRFLFAR 303 (515)
T ss_pred cccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHHHHHHHHhc
Confidence 667899999733 44444447998887742222222 45678999999997 899999987 999999998664
No 67
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.24 E-value=4.7e-10 Score=120.61 Aligned_cols=90 Identities=23% Similarity=0.245 Sum_probs=69.0
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc--------------------------------cchHH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN--------------------------------RSTLS 53 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~--------------------------------r~~~~ 53 (340)
=+|++||.||+||+++.++.|+++| ...|+.|+.+-.+|.. ..+.+
T Consensus 40 ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~ 119 (861)
T TIGR00422 40 PPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEE 119 (861)
T ss_pred CCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHH
Confidence 3799999999999999999999999 5688888775444410 12566
Q ss_pred HHHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+...+.+.++.||+ +|+. .++.. ++.+.......+|.++|++|.
T Consensus 120 ~~~~~~~~~~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 120 SGGTIKNQIKRLGASLDWSR-ERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHhCeeeecCC-CcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 78888999999995 5543 33333 366777788888999999985
No 68
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.19 E-value=6.3e-10 Score=118.75 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecC-----------------Cccc------------cchHHHHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIED-----------------TDIN------------RSTLSATQT 57 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD-----------------~d~~------------r~~~~~~~~ 57 (340)
+|+|||.|||||+++.++.|+++| ...|+.|+.+-. +++. ...+++.+.
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~ 125 (800)
T PRK13208 46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK 125 (800)
T ss_pred cCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999 468887776332 2222 145678889
Q ss_pred HHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 58 IIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 58 i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+.++++.+|+ +|+.. ++.. ++.+..+.+..+|.++|++|.
T Consensus 126 ~~~~~~~lg~s~Dw~~~-~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 126 FRELWRRLGLSVDWSLE-YQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHhCeeeccCCC-cccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 9999999997 55442 3333 366677778888999999884
No 69
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=99.06 E-value=8.3e-09 Score=99.10 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=118.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCC--cEEEE-----ecCCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNG--IFILR-----IEDTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINR 82 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G--~~vlR-----ieD~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~ 82 (340)
-|||.+||||+.+++.+|+..++..| .+++- +++..++....+.......++.++|++|+. ..++||+..+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~- 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE- 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchH-
Confidence 57899999999999999987765555 55553 323334456777777888899999999985 4788998533
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
+.+. .+...|..+-.+|..+. .|-.. ... +.. .+ ..+.+
T Consensus 90 ~~eL-------~~il~~~t~~g~L~R~~----------~~K~k-~~~-~~~-----~~--------------~~~~~--- 128 (332)
T PRK12556 90 IFEL-------AWILSCLTPKGLMNRAH----------AYKAK-VDQ-NKE-----AG--------------LDLDA--- 128 (332)
T ss_pred HHHH-------HHHHHccchHHHHHhcc----------HHHHH-Hhh-hhh-----hc--------------cccCC---
Confidence 2222 23356777766665331 11000 000 000 00 00000
Q ss_pred eeeeecCCCCCCeEEEecCC---CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCceE---
Q psy2377 163 GKITISNKELDDLVIVRADG---IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYG--- 230 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG---~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~~~--- 230 (340)
+. +-| ||.=+.|+++ ..+.++|.-|.|-..+...-.-+.+.++ ++.|...
T Consensus 129 ------~~---------~~gll~YPvLqAADIl---~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~ 190 (332)
T PRK12556 129 ------GV---------NMGLYTYPILMAADIL---LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQE 190 (332)
T ss_pred ------CC---------cchhhhchHHHhhhhh---hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceecccc
Confidence 00 114 4444555443 5578899899999766655556666666 5556543
Q ss_pred EecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 231 HLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 231 H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|.+++..-+|.||||+.++ +.|. -+|+.++.-+..
T Consensus 191 ~~~~l~gLdg~KMSKS~~n~I~L~------D~p~~I~kKI~k 226 (332)
T PRK12556 191 EGAILPGLDGRKMSKSYGNVIPLF------AEQEKLRKLIFK 226 (332)
T ss_pred ccccccCCCCCCCCCCCCCccccc------CCHHHHHHHHHH
Confidence 7888877789999999974 3332 356666665543
No 70
>KOG0436|consensus
Probab=99.02 E-value=1.6e-09 Score=103.99 Aligned_cols=249 Identities=22% Similarity=0.203 Sum_probs=138.6
Q ss_pred CCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHcCCCCCCC
Q psy2377 11 SPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWLGLNYDEG 72 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~lGi~~d~~ 72 (340)
+|+-..||||+++++++|.+|| ...|..+.-...|| |+...+...+++..-+...||.++..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 5788999999999999999999 35677655555555 33344555566666677789999875
Q ss_pred Ccccc--ccHHHHHHHHHHHHHcCCccc-----ccCCHHH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC---CCCCC
Q psy2377 73 PFYQT--KRINRYFEIINYLLSNDYAYY-----CYSSVEE-IESFRKKQRSFGEKPRYNRIWRPEPGKILPS---IPINR 141 (340)
Q Consensus 73 ~~~qS--~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~-l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~---~~~~~ 141 (340)
+ +.+ ++.+..+++-..+.++|..|. .+|-.+| .....+..+. +.-+|.-- +.|-.. -.+..
T Consensus 129 I-RTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~----p~~~gk~v---smEsg~~vv~~kE~ 200 (578)
T KOG0436|consen 129 I-RTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN----PCPPGKVV---SMESGNPVVWRKED 200 (578)
T ss_pred e-ecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC----CCCCCcee---eeccCCceeEeccc
Confidence 4 444 377888888899999999884 2332222 1111111111 11122111 111000 01122
Q ss_pred CceEEEeCCCCCceeEEeccceeeeec-------------CCCCCCeEEEecC-----CCc--------chhhHHHhhhh
Q psy2377 142 KPVIRFKNPLYGNITWNDLIKGKITIS-------------NKELDDLVIVRAD-----GIP--------TYNFCAAIDDW 195 (340)
Q Consensus 142 ~~~~Rl~~~~~~~~~~~D~i~G~~~~~-------------~~~~~DfVl~R~d-----G~p--------tY~la~vvDD~ 195 (340)
.+..||...... ..|-+++...|- .+.+.|+-|-|.. |.| -|..-+++-.+
T Consensus 201 NY~FrLSkfqk~---l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 201 NYFFRLSKFQKP---LEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ceeeeHHhhhhH---HHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 333333221100 011122221111 2346888888842 322 23222221110
Q ss_pred ---c-----------------CCCcEEEeCCCCCCcHHHH-HHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CC
Q psy2377 196 ---D-----------------MKITHVIRGDDHINNTPRQ-INILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TD 251 (340)
Q Consensus 196 ---~-----------------~githvIrG~D~~~~t~~q-~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~ 251 (340)
. =.-.||| |.|.+.-...+ =+++-+-|++.| .+.|-=..+ +|.||||+.|+ +.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~--ngmKMsKSLGNvvd 354 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTK--NGMKMSKSLGNVVD 354 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeee--cceecchhhccccC
Confidence 0 0123666 88875422222 244557799988 467766654 59999999997 45
Q ss_pred hHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 252 IMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 252 l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
-.++.++ |.++++|+||+.-|-
T Consensus 355 P~~l~~k-ygvD~vRyflLr~~~ 376 (578)
T KOG0436|consen 355 PFELVQK-YGVDAVRYFLLREGE 376 (578)
T ss_pred HHHHHHH-hCccceeeEeeeccc
Confidence 6677765 999999999998553
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.98 E-value=2.9e-09 Score=102.16 Aligned_cols=235 Identities=23% Similarity=0.222 Sum_probs=113.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---cEEEEecCCcccc-----------------------------
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH--FNG---IFILRIEDTDINR----------------------------- 49 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~--~~G---~~vlRieD~d~~r----------------------------- 49 (340)
++.--.-+|+|..||||+|-.+..++.+|. ..| ++|+-.||.|+-|
T Consensus 25 ~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~ 104 (360)
T PF01921_consen 25 YVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCH 104 (360)
T ss_dssp EEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSS
T ss_pred EEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCC
Confidence 334445689999999999999999999983 344 4677788887432
Q ss_pred --chHHHHHHHHHHHHHcCCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCC---
Q psy2377 50 --STLSATQTIIDGMKWLGLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRY--- 122 (340)
Q Consensus 50 --~~~~~~~~i~~~l~~lGi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y--- 122 (340)
..+.+...+.+.|+.+|+.+. .++|++ +-..|.+.+...+++ +++|.++-..-.....+..|
T Consensus 105 ~SyaeH~~~~~~~~L~~~gie~e--~~s~te~Y~sG~y~~~i~~aL~~---------~~~I~~Il~~~~~~~~~~~y~Pf 173 (360)
T PF01921_consen 105 ESYAEHFNAPFEEFLDEFGIEYE--FISQTEMYRSGRYDEQIRTALEN---------RDEIREILNEYRGRERPETYSPF 173 (360)
T ss_dssp SCHHHHHHHHHHHHHHTTT---E--EEECCCCCCTTTTHHHHCHHHHT---------HHHHHHHHHHHHHHT--TT--SE
T ss_pred ccHHHHHHHHHHHHHHHcCCceE--EEeHHHhhhCCchHHHHHHHHHh---------HHHHHHHHHHhcCcCCCCCeeee
Confidence 146777888888999999774 344554 123566666655543 23333221111000111111
Q ss_pred CCCCCCCCCCCCCCCCCCC-C--ceEEEeCCCCCceeEEecccee---eeecCCCCCCeEEEecCCCcchhhHHHhhhhc
Q psy2377 123 NRIWRPEPGKILPSIPINR-K--PVIRFKNPLYGNITWNDLIKGK---ITISNKELDDLVIVRADGIPTYNFCAAIDDWD 196 (340)
Q Consensus 123 ~g~cr~~~~~~e~~~~~~~-~--~~~Rl~~~~~~~~~~~D~i~G~---~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~ 196 (340)
.-.|.+ .|+ . .++.+.. +.+.+.+.+.-.|. +.... .+|-..|-.-=+.-=..
T Consensus 174 ~piC~~----------cGri~tt~v~~~d~-~~~~v~Y~c~~cG~~g~~~i~~----------g~gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 174 LPICEK----------CGRIDTTEVTEYDP-EGGTVTYRCEECGHEGEVDITG----------GNGKLQWKVDWPMRWAA 232 (360)
T ss_dssp EEEETT----------TEE--EEEEEEE---SSSEEEEE--TTS---EEETTT----------T-EEE-HHHHHHHHHHH
T ss_pred eeeccc----------cCCcccceeeEeec-CCCEEEEEecCCCCEEEEecCC----------CcccccCCCcChhhhhh
Confidence 111211 121 0 1112221 13456665533232 22211 12444454333321123
Q ss_pred CCCcEEEeCCCCCC---cHHHHHHHH-HHhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 197 MKITHVIRGDDHIN---NTPRQINIL-KALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 197 ~githvIrG~D~~~---~t~~q~~l~-~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.||+.=--|.||.. |...=..++ +.||.++|.....-++....+.||||++|+ +|+++.++- .+||.|+.+++.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTT-S-HHHHHHHHHC
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHh-cCHHHHHHHHcc
Confidence 58887778999998 888878888 889999999888888888888899999996 799999975 788888888764
No 72
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.95 E-value=4.7e-08 Score=93.90 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=118.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCc--------cccchHHHHHHHHHHHHHcCCCCCCC-CccccccHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTD--------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRIN 81 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d--------~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~ 81 (340)
.|||.+||||+.+++.+|...+ .+...++-|-|.. .+.......+.+..++.++|++++.. .+.||+..+
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e 88 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPE 88 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHH
Confidence 5899999999999999998773 4433333333321 23456677777888999999999853 678998652
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
|.+.+- ...|.+|-.+++.+ +.| .+. + .. +
T Consensus 89 -~~el~~-------~l~~~~t~~~l~r~----------~~~----k~k-~----------------~~--~--------- 118 (328)
T TIGR00233 89 -HYELAW-------LLSCQVTFGELKRM----------TQF----KDK-S----------------QA--E--------- 118 (328)
T ss_pred -HHHHHH-------HHHccCCHHHHHhc----------cCc----chh-c----------------cC--C---------
Confidence 333332 24577776666322 111 000 0 00 0
Q ss_pred ceeeeecCCCCCCeEEEecCC---CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCceEE-
Q psy2377 162 KGKITISNKELDDLVIVRADG---IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGH- 231 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG---~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~~~H- 231 (340)
+. +-| ||.-+.|+++ ..+.++|.-|.|-..+.-.-..+.+.+| ++.|...|
T Consensus 119 -------~~---------~~g~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~ 179 (328)
T TIGR00233 119 -------NV---------PIGLFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLIS 179 (328)
T ss_pred -------CC---------CchhhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhc
Confidence 00 113 4555555543 5578899999999776666667778888 67786555
Q ss_pred --ecceecCCCceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 232 --LPMVIDSNKVKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 232 --~pll~~~~g~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+|.|.+.+|+||||+.++ +.|. -+|+.+..-+..
T Consensus 180 ~~~~~l~gl~~~KMSKS~~~s~I~L~------D~~e~I~~KI~~ 217 (328)
T TIGR00233 180 KFFPRLMGLSGKKMSKSDPNSAIFLT------DTPKQIKKKIRK 217 (328)
T ss_pred cccCCCCCCCCCcCCCCCCCCeEeec------CCHHHHHHHHHh
Confidence 356777777999999975 3443 367888777765
No 73
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1e-08 Score=96.91 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=125.8
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHcC-CcEEEEecC------Ccc-ccchHHHHHHHHHHHHHcCCCCCC-CCccccccH
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYARHFN-GIFILRIED------TDI-NRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRI 80 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~ar~~~-G~~vlRieD------~d~-~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~ 80 (340)
=-|||.|||||..+|+.+|+..+... -.|++-.|+ .++ +.....++.++..++.++||+|+. .++.||+..
T Consensus 12 ~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~ 91 (314)
T COG0180 12 IQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVP 91 (314)
T ss_pred CCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCch
Confidence 35999999999999999999998774 556654331 122 156788888999999999999986 478999854
Q ss_pred HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEec
Q psy2377 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
+ +.+. .+.+-|.-+-.+++.+ +.|... +.. .+. .++-
T Consensus 92 e-~~eL-------a~~l~~~~~~gel~r~----------~~fKdk-----~~~-----~~~------~~~~--------- 128 (314)
T COG0180 92 E-HAEL-------AWLLSCVTNFGELERM----------TQFKDK-----SAK-----KGE------SIPI--------- 128 (314)
T ss_pred H-HHHH-------HHHHHccCcHHHHHhh----------cCcchh-----hhc-----ccc------cccc---------
Confidence 3 3333 3456677777777654 223111 000 000 0100
Q ss_pred cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCceEEe--
Q psy2377 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGHL-- 232 (340)
Q Consensus 161 i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~~~H~-- 232 (340)
|- -+||.=+.|+++ .-+-++|=-|.|-........-+.+.++ ++.|.-.+.
T Consensus 129 --Gl----------------~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~ 187 (314)
T COG0180 129 --GL----------------LTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKV 187 (314)
T ss_pred --cc----------------hhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCC
Confidence 00 135555666553 2234677669999888888888888887 667743333
Q ss_pred cceecCCC-ceecccCCCCChHHHHHcCCCHHHHHHHHHHh
Q psy2377 233 PMVIDSNK-VKISKRKEATDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 233 pll~~~~g-~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~l 272 (340)
+.+.+-+| .||||+.++.+|. |. -+|+.++.-+...
T Consensus 188 ~~i~gL~g~~KMSkS~~ns~I~-L~---D~~~~i~kKI~~~ 224 (314)
T COG0180 188 ARLPGLDGPGKMSKSDPNSAIF-LL---DDPKTIRKKIKKA 224 (314)
T ss_pred CcccCCCCCCcccccCCCCeee-cc---CCHHHHHHHHHHh
Confidence 36666677 8999999984442 22 3577777776653
No 74
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=1.3e-07 Score=92.81 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=115.8
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHcCC--cEEEE-----ecCCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHH
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYARHFNG--IFILR-----IEDTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRIN 81 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~ar~~~G--~~vlR-----ieD~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~ 81 (340)
=.|||.+||||+.+++-+|+......| .+++- +.+..++........++..++.++||+|+. ..++||+-.
T Consensus 9 iqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~QSdvp- 87 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFYRQSDIP- 87 (431)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCcch-
Confidence 358999999999999999998875434 34443 212234456667777888899999999985 368899732
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
.+.+ -.+...|.++..+|..+..-..+ ... ... .+. .+.+
T Consensus 88 eh~E-------L~wiL~~it~~g~L~Rm~q~K~k-----------~~~-~~~-----~g~-------~~~~--------- 127 (431)
T PRK12284 88 EIPE-------LTWLLTCVAGKGLLNRAHAYKAA-----------VDK-NVA-----AGE-------DPDA--------- 127 (431)
T ss_pred hHHH-------HHHHHHhhhhHHHHHhhhHHHHH-----------HHh-hhc-----ccc-------Cccc---------
Confidence 2222 23445677777777554211000 000 000 000 0000
Q ss_pred ceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC-------CCCCc--e-EE
Q psy2377 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG-------VTLPF--Y-GH 231 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg-------~~~p~--~-~H 231 (340)
+. +-|..+|-.--+.|=.+.+.++|--|.|-..+...-.-+.+.++ ++.|. . .|
T Consensus 128 -------~i---------~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~ 191 (431)
T PRK12284 128 -------GV---------TAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEES 191 (431)
T ss_pred -------Cc---------chHHhhchHHHHhhhhhcCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccc
Confidence 00 12444554333334345678899889998655544445555554 22342 2 35
Q ss_pred ecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 232 LPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 232 ~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.+.|.+-+|+||||+.++ +.|. -+|+.|+.-+..
T Consensus 192 ~~~I~gLdg~KMSKS~~n~I~L~------Ds~~~I~kKI~~ 226 (431)
T PRK12284 192 VATLPGLDGRKMSKSYDNTIPLF------APREELKKAIFS 226 (431)
T ss_pred cccccCCCCccccCCCCCEeeec------CCHHHHHHHHhc
Confidence 678888889999999874 3333 256666666554
No 75
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.86 E-value=4.4e-07 Score=88.35 Aligned_cols=186 Identities=18% Similarity=0.184 Sum_probs=118.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCc-------cccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTD-------INRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINR 82 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d-------~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~ 82 (340)
.|||.|||||+. .+.++..-+..|...++-|.|.. ....+.....++..++.++|++++. ..+.||+..+
T Consensus 74 ~PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~- 151 (368)
T PRK12285 74 MPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK- 151 (368)
T ss_pred CCCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH-
Confidence 477999999986 46666666665556555555542 2345677777788899999999985 3688998764
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
|.+.+-.| .|..|-.+++.+ ..|.. +. +.
T Consensus 152 ~~~l~~~l-------~~~~t~~~l~r~----------~~f~~---~~-~~------------------------------ 180 (368)
T PRK12285 152 VYDLAFEL-------AKKVNFSELKAI----------YGFTG---ET-NI------------------------------ 180 (368)
T ss_pred HHHHHHHH-------HhhCcHHHHHHh----------hCCCC---CC-ch------------------------------
Confidence 44444433 455555555322 01100 00 00
Q ss_pred eeeeecCCCCCCeEEEecCCCcchhhHHHhh-hh--cCCCcEEEeCCCCCCcHHHHHHHHHHh----CCCCCceEEecce
Q psy2377 163 GKITISNKELDDLVIVRADGIPTYNFCAAID-DW--DMKITHVIRGDDHINNTPRQINILKAL----GVTLPFYGHLPMV 235 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG~ptY~la~vvD-D~--~~githvIrG~D~~~~t~~q~~l~~aL----g~~~p~~~H~pll 235 (340)
|. -.||.=+.|+++- +. ...-++|..|.|-..+.-.-.-+.+.+ |++.|.-.|.+++
T Consensus 181 g~----------------~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~~~~l 244 (368)
T PRK12285 181 GH----------------IFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFM 244 (368)
T ss_pred hh----------------hhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHhhhcc
Confidence 00 0245555565531 11 135578888999976665556666777 9999988888888
Q ss_pred ecCCCceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 236 IDSNKVKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 236 ~~~~g~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.+-+|.||||+... +.|. -+|+.++.-+..
T Consensus 245 pgL~G~KMSkS~~~s~I~L~------D~p~~I~kKI~k 276 (368)
T PRK12285 245 PGLTGGKMSSSKPESAIYLT------DDPETVKKKIMK 276 (368)
T ss_pred cCCCCCcCCCCCCCCeeecc------CCHHHHHHHHHh
Confidence 88899999999853 4443 267777777665
No 76
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=98.84 E-value=2.2e-07 Score=89.40 Aligned_cols=193 Identities=18% Similarity=0.175 Sum_probs=114.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec------CCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE------DTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINRY 83 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie------D~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~y 83 (340)
.|||.+||||+.+++.+|...+..+..+++-.| +..+.....+++.++..++.++|++++. ..+.||+..+ +
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e-~ 88 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPE-L 88 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchH-H
Confidence 468999999999999999888877666666432 2233456777888888889999999974 3678998532 2
Q ss_pred HHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccce
Q psy2377 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G 163 (340)
.+. .+.+.|.++-.++..+...... +... . +. +
T Consensus 89 ~~l-------~~~l~~~~~~~~l~r~~~~k~~----------~~~~-~---------------~~----------~---- 121 (333)
T PRK12282 89 AEL-------TMYYMNLVTVARLERNPTVKTE----------IAQK-G---------------FG----------R---- 121 (333)
T ss_pred HHH-------HHHHHhhchHHHHhhchHHHHH----------Hhcc-C---------------CC----------C----
Confidence 221 2335677666655322110000 0000 0 00 0
Q ss_pred eeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC--CCCCce-------EEecc
Q psy2377 164 KITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG--VTLPFY-------GHLPM 234 (340)
Q Consensus 164 ~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg--~~~p~~-------~H~pl 234 (340)
+. .-|..+|-+--+.|=...+.++|.-|.|-..+.-.-.-+.+.+| +..|.+ .|.|+
T Consensus 122 -----~~---------~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~ 187 (333)
T PRK12282 122 -----SI---------PAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGR 187 (333)
T ss_pred -----CC---------cchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCc
Confidence 00 01333443333333345688999999999766655566667776 332332 24667
Q ss_pred eecCCC-ceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 235 VIDSNK-VKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 235 l~~~~g-~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|.+-+| .||||+.++ +.|. -+|+.+..-+..
T Consensus 188 i~~L~g~~KMSKS~~~~I~L~------D~pe~I~kKI~~ 220 (333)
T PRK12282 188 LPGLDGKAKMSKSLGNAIYLS------DDADTIKKKVMS 220 (333)
T ss_pred ccCCCCCCcCCCCCCCeeeee------CCHHHHHHHHHh
Confidence 766666 799999974 3332 256666666554
No 77
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.79 E-value=7.6e-07 Score=83.49 Aligned_cols=232 Identities=15% Similarity=0.130 Sum_probs=138.2
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCc-EEEE------ecCC-c--------cccchHHHHHHHHHHHHHcCCC--CCC
Q psy2377 11 SPTG-NLHIGGIRTALFSWAYARHFNGI-FILR------IEDT-D--------INRSTLSATQTIIDGMKWLGLN--YDE 71 (340)
Q Consensus 11 sPtG-~LHiG~~rtal~~~~~ar~~~G~-~vlR------ieD~-d--------~~r~~~~~~~~i~~~l~~lGi~--~d~ 71 (340)
-||| .|||||+.+ +.++..-+..+.. +++- +.|- + +.....+..+.+..++.++|++ ++.
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 4899 799999998 7767766664433 3322 3331 1 2355677788888899999998 543
Q ss_pred -CCccccccHH--HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEe
Q psy2377 72 -GPFYQTKRIN--RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFK 148 (340)
Q Consensus 72 -~~~~qS~~~~--~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~ 148 (340)
.++.||+-.. .+.+++..| -|..+-.++..... + .+ |+.
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~~----------~----k~-----------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKTS----------F----QS-----------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhChH----------H----HH-----------------Hhc
Confidence 3677887542 233333322 34445444432110 0 00 000
Q ss_pred CCCCCceeEEeccceeeeecCCCCCCeEEEecCCCcch---hhHHHhh-hhcCCCcEEEeCCCCCCcHHHHHHHHHHhC-
Q psy2377 149 NPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTY---NFCAAID-DWDMKITHVIRGDDHINNTPRQINILKALG- 223 (340)
Q Consensus 149 ~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY---~la~vvD-D~~~githvIrG~D~~~~t~~q~~l~~aLg- 223 (340)
. + + +-|..+| +.++.+- +...++++++-|.|-..+...-.-+.+.++
T Consensus 128 ~---~-----------~--------------~~~~~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~ 179 (273)
T cd00395 128 E---G-----------I--------------SATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNG 179 (273)
T ss_pred C---C-----------C--------------CchhhhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCC
Confidence 0 0 0 1123333 4444321 122466999999999888888888888885
Q ss_pred CCCCceEEecceecCCCceecccCCCC-ChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCc
Q psy2377 224 VTLPFYGHLPMVIDSNKVKISKRKEAT-DIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPA 302 (340)
Q Consensus 224 ~~~p~~~H~pll~~~~g~KLSKR~g~~-~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 302 (340)
++.|.-.+.|+|.+.+|.||||+.++. .+..+ --+|+.+..++...- + -.+.++++.|.
T Consensus 180 ~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~---~dsp~~i~~ki~~a~----d---~~v~~~~~~~t---------- 239 (273)
T cd00395 180 FTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTE---KTSPYEFYQFWINAV----D---SDVINILKYFT---------- 239 (273)
T ss_pred CCCCeEEeeccccCCCCCcCCCCCCCCcccccc---CCCHHHHHHHHHccc----H---hHHHHHHHHHc----------
Confidence 677888888999999999999998753 33322 246888888886422 1 12334555554
Q ss_pred cccHHHHHHHHHHHhhcCCHHHHHHhH
Q psy2377 303 QFNLKKLEWLNNFYIKSYDDKKLLNLI 329 (340)
Q Consensus 303 ~~d~~kl~~~n~~~i~~~~~~~~~~~~ 329 (340)
..+.+++..+-.++-+.....++-+.+
T Consensus 240 ~~~~~ei~~i~~~~~~~~~~~~~K~~L 266 (273)
T cd00395 240 FLSKEEIERLEQEQYEAPGYRVAQKTL 266 (273)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 125677777666666655554444443
No 78
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.73 E-value=1e-06 Score=82.53 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=143.5
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCcEEEEecC-------C---------ccccchHHHHHHHHHHHHHcCCC--CCC
Q psy2377 11 SPTG-NLHIGGIRTALFSWAYARHFNGIFILRIED-------T---------DINRSTLSATQTIIDGMKWLGLN--YDE 71 (340)
Q Consensus 11 sPtG-~LHiG~~rtal~~~~~ar~~~G~~vlRieD-------~---------d~~r~~~~~~~~i~~~l~~lGi~--~d~ 71 (340)
.||| .+||||+..++ ++..-+..|-..+.-|-| - .....+......+..++.++|++ ++.
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5899 99999999765 454444544333333333 2 12345677788888999999996 542
Q ss_pred -CCccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2377 72 -GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (340)
Q Consensus 72 -~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~ 150 (340)
.++.||+-.+. .....++. +.|.++-.++...-.... |+...
T Consensus 87 ~~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~~~~k~-------------------------------r~~~~ 129 (269)
T cd00805 87 AKFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRRDAVKV-------------------------------RLEEE 129 (269)
T ss_pred eEEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHHHHHHH-------------------------------HHhcC
Confidence 36788864332 11111221 456777776654311100 00000
Q ss_pred CCCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceE
Q psy2377 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230 (340)
Q Consensus 151 ~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~ 230 (340)
.+ + +-|..+|-+--+.|=...+.+.++-|.|-..+......+.+.+++..|.-.
T Consensus 130 -~~-----------~--------------~~~~~~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l 183 (269)
T cd00805 130 -EG-----------I--------------SFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGL 183 (269)
T ss_pred -CC-----------C--------------cHHHHHHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 00 0 112334433333333345678999999999988888889999999888888
Q ss_pred EecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHH
Q psy2377 231 HLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (340)
Q Consensus 231 H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~ 310 (340)
|.|++.+.+|.||||+.++..-..+ --+|+.+..++...= +. .+.++++.|. . ++.+++.
T Consensus 184 ~~~ll~~l~G~KMSKS~~~~~~i~l---~dsp~~i~~Ki~~a~----~~---~v~~~l~~~~-~---------~~~~~~e 243 (269)
T cd00805 184 TTPLLTGLDGGKMSKSEGNAIWDPV---LDSPYDVYQKIRNAF----DP---DVLEFLKLFT-F---------LDYEEIE 243 (269)
T ss_pred eeccccCCCCCcccCCCCCcccccC---CCCHHHHHHHHHcCC----cH---HHHHHHHHHH-c---------CCHHHHH
Confidence 9999999999999999975321121 247888888886421 11 3456666665 2 2356666
Q ss_pred HHHHHHhhcCCHHHHHHhHHHHH
Q psy2377 311 WLNNFYIKSYDDKKLLNLIQPII 333 (340)
Q Consensus 311 ~~n~~~i~~~~~~~~~~~~~~~~ 333 (340)
.+-.+|-..-.+.++.+.+...+
T Consensus 244 el~~~~~~~~~~~~~K~~la~~i 266 (269)
T cd00805 244 ELEEEHAEGPLPRDAKKALAEEL 266 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 67677754332666655555443
No 79
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.72 E-value=8.6e-07 Score=86.45 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec------CCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE------DTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINRY 83 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie------D~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~y 83 (340)
.|||.+||||+.+++.+|+.-+...-.+++-.| .-.+...+......+..++.++|++|+. ..+.||+-
T Consensus 10 qPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v---- 85 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV---- 85 (398)
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc----
Confidence 589999999999999998854442223444422 1124466777888889999999999975 36789974
Q ss_pred HHHHHHHHHcCCcccccCCHHHHHH
Q psy2377 84 FEIINYLLSNDYAYYCYSSVEEIES 108 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~~~l~~ 108 (340)
.+.-+..+.+.|..+-.+++.
T Consensus 86 ----~eh~eL~wil~~~t~~~~L~R 106 (398)
T PRK12283 86 ----PEHAELHLLLSMITPLGWLER 106 (398)
T ss_pred ----hHHHHHHHHHHhhccHHHHHh
Confidence 222333456778877776643
No 80
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=98.67 E-value=2.3e-06 Score=82.43 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=120.9
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCC-------ccccchHHHHHHHHHHHHHcCCCCCCC-CccccccHH
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT-------DINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRIN 81 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~-------d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~ 81 (340)
=.|||.+||||+- ++.+|...+..+...++-|-|. .+...+......+..++.++|++++.. .+.||+-..
T Consensus 37 ~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~ 115 (329)
T PRK08560 37 FEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQL 115 (329)
T ss_pred cCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhc
Confidence 3589999999965 6776777666555444434333 134567778888889999999998753 678886322
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
.. ++...+. ...|.++-.++..... .+ + +.. +
T Consensus 116 ~~-~~~~~~~----~l~~~~~~~~l~r~~~---------~~-~--~~~---~---------------------------- 147 (329)
T PRK08560 116 DK-EYWLLVL----KLAKNTTLARARRSMT---------IM-G--RRM---E---------------------------- 147 (329)
T ss_pred cc-hHHHHHH----HHHhhccHHHHHHhhh---------hh-c--ccC---C----------------------------
Confidence 11 1111111 1346666665543210 00 0 000 0
Q ss_pred ceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCc
Q psy2377 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV 241 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~ 241 (340)
.. +-|..+|-+--+.|=...+.++|+-|.|-..+.-.-..+.+.+|...|.-.+.|+|.+-+|.
T Consensus 148 -------~~---------~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~ 211 (329)
T PRK08560 148 -------EP---------DVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGG 211 (329)
T ss_pred -------CC---------CHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCC
Confidence 00 12445555555555556689999999999776666666778889888988899999988887
Q ss_pred --eecccC-C-CCChHHHHHcCCCHHHHHHHHHH
Q psy2377 242 --KISKRK-E-ATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 242 --KLSKR~-g-~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
||||+. + ++.|. -+|+.++.-+..
T Consensus 212 ~~KMSKS~p~~~I~L~------D~~~~I~~KI~k 239 (329)
T PRK08560 212 GIKMSKSKPGSAIFVH------DSPEEIRRKIKK 239 (329)
T ss_pred CCCCcCCCCCCeeccc------CCHHHHHHHHHh
Confidence 999998 4 34554 357777776655
No 81
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=98.58 E-value=4.2e-06 Score=82.81 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=84.4
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCC-CCChHHHH
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKE-ATDIMYYK 256 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g-~~~l~~l~ 256 (340)
|.++|.+--+.|=... +++.++-|.|-..|.-.=.-+.+.+|..++.-.++|+|.+.+|+||||+.+ ++.|.+
T Consensus 168 ~ef~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~d-- 245 (408)
T PRK05912 168 TEFLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLDE-- 245 (408)
T ss_pred hhhhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCCC--
Confidence 3445544444443344 788888999998888777778888887666557899999999999999986 466653
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHHHHhHH
Q psy2377 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQ 330 (340)
Q Consensus 257 ~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~~~~~~ 330 (340)
.-.+|+.+..++.... +. .+..+++.|. .++.+++..+-.+|...-.+.++-+.|.
T Consensus 246 -~~tsp~~i~qki~~~~----D~---~v~~~l~~~t----------~~~~~ei~~l~~~~~~g~~~~~~Kk~LA 301 (408)
T PRK05912 246 -EKTSPYEMYQKWMNIS----DA---DVWRYLKLLT----------FLSLEEIEELEEELAEGPNPREAKKVLA 301 (408)
T ss_pred -CCCCHHHHHHHHhcCC----hH---HHHHHHHHHh----------cCCHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4467889998887531 11 2345556554 1255556666556544434444444333
No 82
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.48 E-value=3.9e-07 Score=97.69 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=70.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~l 65 (340)
+++=-.|+|||.|||||++++++.|+++| ...|+-|+.+-..| +.....++++.+.+.|+.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34445899999999999999999999999 46898888744333 2344677889999999999
Q ss_pred CCC--CCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 66 GLN--YDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi~--~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+. |+. .+..++ +....+.+..+|.++|++|.
T Consensus 112 G~~~Dw~~-~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDR-EIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCC-CcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 975 544 333333 44555555679999999984
No 83
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.46 E-value=3.9e-07 Score=97.39 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=71.7
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~lG 66 (340)
++=-.|+|||.|||||+++.++.|+++| ...|+.|+.+-..| +.....++++.+.+.|+.||
T Consensus 36 i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lG 115 (805)
T PRK00390 36 VLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLG 115 (805)
T ss_pred EEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3344699999999999999999999999 46888877643332 23456788999999999999
Q ss_pred CC--CCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 67 LN--YDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 67 i~--~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+. |+. .+... ++.+..+.+..+|.++|++|.
T Consensus 116 i~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 116 FSYDWSR-EIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CcccCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 84 544 23323 477888888899999999984
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.4e-07 Score=97.50 Aligned_cols=94 Identities=21% Similarity=0.232 Sum_probs=71.6
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ec-------------CCccccchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IE-------------DTDINRSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ie-------------D~d~~r~~~~~~~~i~~~l~~lG 66 (340)
++=-=|+|||.||+||+|++++.|++|| +..|+-||- ++ .++|......+++.+.+.|..||
T Consensus 38 vl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG 117 (814)
T COG0495 38 VLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLG 117 (814)
T ss_pred EEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhC
Confidence 3444599999999999999999999999 578998886 22 55677788999999999999988
Q ss_pred C--CCCCCCcccc-ccHHHHHHHHHHHHHcCCccc
Q psy2377 67 L--NYDEGPFYQT-KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 67 i--~~d~~~~~qS-~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+ +|+.+..+.. +|..-.+=...+|.++|++|.
T Consensus 118 ~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 118 FSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CccccccceecCCccHHHHHHHHHHHHHHCCCEEe
Confidence 5 6665443333 233334445567999999994
No 85
>PLN02886 aminoacyl-tRNA ligase
Probab=98.42 E-value=8.3e-07 Score=86.56 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec-----CCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE-----DTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINRYF 84 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie-----D~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~y~ 84 (340)
.|||.+||||+.+++.+|+.-++....+++-.| ...+.....+....+..++.++|++++. ..+.||+- ..+.
T Consensus 54 qPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v-~e~~ 132 (389)
T PLN02886 54 QPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQSHV-PAHA 132 (389)
T ss_pred CCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEeCCC-chhH
Confidence 478999999999999999877652234555422 2234456777788888999999999975 36889973 2233
Q ss_pred HHHHHHHHcCCcccccCCHHHHH
Q psy2377 85 EIINYLLSNDYAYYCYSSVEEIE 107 (340)
Q Consensus 85 ~~~~~L~~~G~aY~c~cs~~~l~ 107 (340)
+.+ +.+.|..+-.+|+
T Consensus 133 eL~-------wil~~~t~~g~L~ 148 (389)
T PLN02886 133 ELM-------WLLSCSTPIGWLN 148 (389)
T ss_pred HHH-------HHHHhhCcHHHHH
Confidence 322 3356776766664
No 86
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.42 E-value=2.1e-05 Score=77.79 Aligned_cols=101 Identities=13% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCC-CCChHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2377 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKE-ATDIMYYKKKGFLPEAILNYLARLGWSH 276 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g-~~~l~~l~~~G~~p~al~~~l~~lG~~~ 276 (340)
+++.++-|.|-..|.-.=..+.+.+|...|.-.++|+|.+.+|+||||+.+ ++.|.+ .-.+|+.+..++...
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~d---~~tsp~~i~qki~~~---- 258 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLDP---EKTSPYEFYQFWMNI---- 258 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceeccC---CCCCHHHHHHHHHcC----
Confidence 888889999999998888888999998888777899999999999999987 466653 345688888887642
Q ss_pred CCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhh
Q psy2377 277 GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 277 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~ 318 (340)
++. .+.+++..|. .++.+++..+-..|-.
T Consensus 259 ~D~---~v~~~l~~~t----------~l~~~ei~~l~~~~~~ 287 (410)
T PRK13354 259 DDR---DVVKYLKLFT----------DLSPDEIDELEAQLET 287 (410)
T ss_pred ChH---HHHHHHHHHh----------CCCHHHHHHHHHHHhc
Confidence 111 2345555554 1255566666555554
No 87
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.41 E-value=8.8e-07 Score=85.37 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=110.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec-----CCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE-----DTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINRYF 84 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie-----D~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~y~ 84 (340)
.|||.+||||+.+++.+|..-+.....+++-.| +-.....+.+.+..+..++.++|++++. ..+.||+-.+ +.
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~~ 87 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-HA 87 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-hH
Confidence 478999999999999888766654333444321 1123456777788888899999999974 3678997432 33
Q ss_pred HHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecccee
Q psy2377 85 EIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK 164 (340)
Q Consensus 85 ~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~ 164 (340)
+..-. ..|..+-.+++..- .| .+. . + + .. +
T Consensus 88 el~~~-------l~~~~~~~~l~r~~----------~~----k~~-~--------~-----~--~~--------~----- 117 (333)
T PRK00927 88 ELAWI-------LNCITPLGELERMT----------QF----KDK-S--------A-----K--QK--------E----- 117 (333)
T ss_pred HHHHH-------HHhhhhHHHHHhhh----------hH----HHH-H--------h-----c--cC--------C-----
Confidence 33322 23444444443220 11 000 0 0 0 00 0
Q ss_pred eeecCCCCCCeEEEecCC---CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCC------CCCceEE---e
Q psy2377 165 ITISNKELDDLVIVRADG---IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV------TLPFYGH---L 232 (340)
Q Consensus 165 ~~~~~~~~~DfVl~R~dG---~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~------~~p~~~H---~ 232 (340)
+. +-| ||.=+.|+++ ..+.++|.-|.|-..+.-.-.-+.+.++. +.|...| .
T Consensus 118 ----~~---------~~g~~~YP~lQaaDil---~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~ 181 (333)
T PRK00927 118 ----NV---------SAGLFTYPVLMAADIL---LYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVG 181 (333)
T ss_pred ----CC---------CcHhhhcHHHHHHHHH---hcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhcccc
Confidence 00 113 4444555553 45889999999997666555566677663 4564333 3
Q ss_pred cceecCCCc--eecccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy2377 233 PMVIDSNKV--KISKRKEA----TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 233 pll~~~~g~--KLSKR~g~----~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|+|.+-+|. ||||+.++ +.|. -+|+.+..-+..
T Consensus 182 ~~l~gL~g~~~KMSKS~~~~~~~I~l~------D~~~~I~~KI~~ 220 (333)
T PRK00927 182 ARVMGLDGPTKKMSKSDPNDNNTINLL------DDPKTIAKKIKK 220 (333)
T ss_pred ccccCCCCCCCCCCCCCCCCCCeEEee------CCHHHHHHHHHh
Confidence 777777776 99999873 3343 256666666654
No 88
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6e-06 Score=82.02 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=50.7
Q ss_pred CCcEEEeCCCCCCc---HHHHHHHH-HHhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 198 KITHVIRGDDHINN---TPRQINIL-KALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 198 githvIrG~D~~~~---t~~q~~l~-~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|||.=--|.||+.+ -..=..+. +-+|+++|.-...-++...+|.||||++|. +++++.++- .+||.||.++.+
T Consensus 229 gVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev-~~pE~lry~~~r 306 (521)
T COG1384 229 GVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIAR 306 (521)
T ss_pred CcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcEEcHHHHHHh-cCHhHeeeeeee
Confidence 55544459999852 22223333 467999886444445555557999999996 899999975 788888887764
No 89
>KOG0435|consensus
Probab=98.33 E-value=4.4e-07 Score=91.81 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=73.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---------------ec-CCccccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---------------IE-DTDINRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---------------ie-D~d~~r~~~~~~~~i~~~l~~l 65 (340)
++.-.=|+|+|.|||||.|.+.++|.+|| +.+|+-|+. || .++|.......++.+.+.|..+
T Consensus 60 YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~l 139 (876)
T KOG0435|consen 60 YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSL 139 (876)
T ss_pred eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHc
Confidence 45556699999999999999999999999 568988875 22 5567677888999999999999
Q ss_pred CC--CCCCCCcccc-ccHHHHHHHHHHHHHcCCccc
Q psy2377 66 GL--NYDEGPFYQT-KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi--~~d~~~~~qS-~~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+ +||.++.... +|..--+-+.-+|.+.|.||.
T Consensus 140 g~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 140 GISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred CcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 96 6776554444 344444455668999999994
No 90
>PLN02563 aminoacyl-tRNA ligase
Probab=98.26 E-value=2.5e-06 Score=92.26 Aligned_cols=93 Identities=25% Similarity=0.264 Sum_probs=71.2
Q ss_pred EEEeCCCCCCc-CchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHc
Q psy2377 5 RTRFAPSPTGN-LHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 5 ~~RfaPsPtG~-LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~l 65 (340)
++=-.|+|||. |||||++++++.|++|| ...|+-|+.+-..| +.....++++.+.+.|+.|
T Consensus 114 v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~l 193 (963)
T PLN02563 114 VLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSL 193 (963)
T ss_pred EEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHh
Confidence 34446999996 99999999999999999 56898888744333 2345678889999999999
Q ss_pred CC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 66 GL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+ +|+.. +..+ ++...-+.+..+|.++|++|.
T Consensus 194 G~s~DW~r~-~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 194 GFSYDWDRE-ISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred CcEeeCCCC-eecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 95 66553 3333 366667778888999999984
No 91
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=98.24 E-value=0.00019 Score=70.35 Aligned_cols=83 Identities=13% Similarity=0.004 Sum_probs=53.8
Q ss_pred CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCC-CCCceEEecceecC-CC-ceecccCCC--CChHHHHH
Q psy2377 183 IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV-TLPFYGHLPMVIDS-NK-VKISKRKEA--TDIMYYKK 257 (340)
Q Consensus 183 ~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~-~~p~~~H~pll~~~-~g-~KLSKR~g~--~~l~~l~~ 257 (340)
..+|-+--+.|=...+.+++.-|.|-....-.-..+.+.+|. +.|...|.|+|.+- +| .||||+.++ +.|.
T Consensus 195 ~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~---- 270 (383)
T PTZ00126 195 QILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFME---- 270 (383)
T ss_pred hhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCC----
Confidence 334433333333455788888899984333333556678885 46777788999887 45 799999865 3443
Q ss_pred cCCCHHHHHHHHHH
Q psy2377 258 KGFLPEAILNYLAR 271 (340)
Q Consensus 258 ~G~~p~al~~~l~~ 271 (340)
-+|+.++.-+..
T Consensus 271 --Dspe~I~kKI~k 282 (383)
T PTZ00126 271 --DSEEDVNRKIKK 282 (383)
T ss_pred --CCHHHHHHHHHh
Confidence 267777776665
No 92
>KOG2713|consensus
Probab=98.23 E-value=8.9e-06 Score=74.97 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=103.4
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHcCCc---EEEEecCCc------cccchHHHHHHHHHHHHHcCCCCCCC-Ccccccc
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYARHFNGI---FILRIEDTD------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKR 79 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~ar~~~G~---~vlRieD~d------~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~ 79 (340)
--|||.+||||..+|+-+|+--+..... .++-|-|.. ++....++.-.....|.++||++... .++||+
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~- 98 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSD- 98 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeecc-
Confidence 3699999999999999999988853322 344455543 23466667777777799999999754 678886
Q ss_pred HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEe
Q psy2377 80 INRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWND 159 (340)
Q Consensus 80 ~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D 159 (340)
.+.+.++. +...|-.+-..|..+- .| ++. +. |.+
T Consensus 99 Vpqh~el~-------WlLsslt~mg~L~rm~----------Q~----KeK-s~-------------~~~----------- 132 (347)
T KOG2713|consen 99 VPQHAELS-------WLLSSLTTMGRLARMP----------QW----KEK-SE-------------RFK----------- 132 (347)
T ss_pred chHHHHHH-------HHHHhccchHHHHhhH----------HH----Hhh-hh-------------hhc-----------
Confidence 33333322 3334555555554431 11 111 00 111
Q ss_pred ccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC-------CCCCc----
Q psy2377 160 LIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG-------VTLPF---- 228 (340)
Q Consensus 160 ~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg-------~~~p~---- 228 (340)
.+|+- -|.+||-.--+.|=.+.+-|||=-|+|-......-..|.++++ ++.|.
T Consensus 133 ------------~~~~~----vGLftYPvLqAADILLYksThVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~ 196 (347)
T KOG2713|consen 133 ------------VGDVP----VGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILR 196 (347)
T ss_pred ------------cCccc----eeeecchhHhhhhHhhhccccccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHh
Confidence 12222 2777786666666668899999779997544433334445554 22331
Q ss_pred eEEeccee-cCCCceecccCCC
Q psy2377 229 YGHLPMVI-DSNKVKISKRKEA 249 (340)
Q Consensus 229 ~~H~pll~-~~~g~KLSKR~g~ 249 (340)
-.|-.++- ..-.+||||+.++
T Consensus 197 ~~~~rV~SL~dpekKMSKSd~n 218 (347)
T KOG2713|consen 197 QSHARVMSLRDPEKKMSKSDPN 218 (347)
T ss_pred hhhhhhhhccChhhhcccCCCC
Confidence 11322221 1234699999975
No 93
>PLN02943 aminoacyl-tRNA ligase
Probab=98.21 E-value=4e-06 Score=91.15 Aligned_cols=92 Identities=23% Similarity=0.232 Sum_probs=69.5
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc-----------------------c---------ch
Q psy2377 6 TRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN-----------------------R---------ST 51 (340)
Q Consensus 6 ~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~-----------------------r---------~~ 51 (340)
+=.+|+|||.||+||+++.++.|+++| ...|+.++.+-.+|.. | ..
T Consensus 93 ~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~ 172 (958)
T PLN02943 93 PMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWK 172 (958)
T ss_pred ecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHH
Confidence 334799999999999999999999999 5689888765444421 0 12
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 52 LSATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 52 ~~~~~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
.++...|.+.++.||+ +|+. .++..+ +.........+|.++|++|.
T Consensus 173 ~~~~~~~~~~~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 173 EKYGGTITNQIKRLGASCDWSR-ERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHhCcceecCC-CcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 5667888999999997 6654 344443 56667777788999999985
No 94
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=98.20 E-value=3.6e-06 Score=92.09 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=71.0
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc---------------------------------c
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN---------------------------------R 49 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~---------------------------------r 49 (340)
++==+|+|||.||+||+++.++.|+++| ...|+.|+.+-.+|.. .
T Consensus 64 i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~ 143 (995)
T PTZ00419 64 IVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWE 143 (995)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHH
Confidence 3445799999999999999999999999 4688888775544421 1
Q ss_pred chHHHHHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 50 STLSATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 50 ~~~~~~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
....+...+.+.|..||+ +|+.. ++.. ++....+.+..+|.++|++|.
T Consensus 144 w~~~~~~~~~~~~~~lG~~~DW~~~-~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 144 WKDKHGNNICNQLRRLGSSLDWSRE-VFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHhCceeeCCCC-cCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 136778888999999995 66553 3333 466788888889999999985
No 95
>PLN02486 aminoacyl-tRNA ligase
Probab=98.18 E-value=0.00043 Score=67.82 Aligned_cols=189 Identities=14% Similarity=0.197 Sum_probs=103.8
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCcEEEEecCC-------ccccchHHHHHHHHHHHHHcCCCCCCC-CccccccHH
Q psy2377 11 SPTG-NLHIGGIRTALFSWAYARHFNGIFILRIEDT-------DINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRIN 81 (340)
Q Consensus 11 sPtG-~LHiG~~rtal~~~~~ar~~~G~~vlRieD~-------d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~ 81 (340)
.||| .|||||+..+...-.+.+..+...++-|.|- .+...+.++..+...++.++|++++.. ++.+++...
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 5899 5999999988865544444445555556651 122456667778888899999998753 455555442
Q ss_pred --HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEe
Q psy2377 82 --RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWND 159 (340)
Q Consensus 82 --~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D 159 (340)
.|..++ +|-. |+ |-.++.. .. |. +- + .+
T Consensus 161 ~~~~~~~~-~l~r------~~-t~~~~~~------~~-------gf--~~-~-------~~------------------- 190 (383)
T PLN02486 161 GAFYKNMV-KIAK------CV-TLNQVRG------IF-------GF--SG-E-------DN------------------- 190 (383)
T ss_pred HhHHHHHH-HHHh------hC-cHHHHHH------hh-------Cc--CC-C-------CC-------------------
Confidence 122222 1211 10 1122110 00 10 00 0 00
Q ss_pred ccceeeeecCCCCCCeEEEecCCCcchhhHHHhh---hhcCC----C-cEEEeCCCCCCcHHHHHHHHHHhCCCCCceEE
Q psy2377 160 LIKGKITISNKELDDLVIVRADGIPTYNFCAAID---DWDMK----I-THVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (340)
Q Consensus 160 ~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvD---D~~~g----i-thvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H 231 (340)
+ |.+ .||.-+.|+++- +++.| + ++|=.|.|-..+--.-.-+.+.+|...|...|
T Consensus 191 -i-g~~----------------~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~ 252 (383)
T PLN02486 191 -I-GKI----------------SFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIE 252 (383)
T ss_pred -c-hhh----------------hhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceec
Confidence 0 111 244445555431 22222 2 45556888644444445667888987888877
Q ss_pred ecceecCCC--ceecccCCC--CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 232 LPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 232 ~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
.+++-.-.| .||||+.++ +.|.+ +|+.+...+....
T Consensus 253 ~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A 292 (383)
T PLN02486 253 SRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINKYA 292 (383)
T ss_pred cccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhcCC
Confidence 554444444 699999975 44442 7888888887633
No 96
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=98.17 E-value=5.3e-06 Score=89.57 Aligned_cols=93 Identities=14% Similarity=0.221 Sum_probs=68.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc-----------------------cc----------c
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD-----------------------IN----------R 49 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d-----------------------~~----------r 49 (340)
+.=-+|+|||.||+||+++.++.|+++| ...|+.|+.+-..| +. .
T Consensus 40 i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~ 119 (861)
T TIGR00392 40 FHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCRE 119 (861)
T ss_pred EecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHH
Confidence 3445799999999999999999999999 46888777622221 10 2
Q ss_pred chHHHHHHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 50 STLSATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 50 ~~~~~~~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
...++++.+.+.+..||+ +|+. +|...+ +.+.......+|.++|++|.
T Consensus 120 ~~~~~~~~~~~~~~~lG~~~dw~~-~y~T~~p~y~~~~~~~f~~l~~~gliyr 171 (861)
T TIGR00392 120 FALKQIEEQREQFQRLGVWGDWEN-PYKTMDPSYEESQWWLFKEAHEKGLLYR 171 (861)
T ss_pred HHHHHHHHHHHHHHHhCceecCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEee
Confidence 345578888899999998 7775 343333 55556667778999999985
No 97
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.13 E-value=6.5e-06 Score=89.00 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc------------------c--------------chHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN------------------R--------------STLSA 54 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~------------------r--------------~~~~~ 54 (340)
+|++||.||+||+++.++.|+++| ...|+.++.+-.+|.. + ...++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999 4688877765544421 0 14667
Q ss_pred HHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 55 TQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 55 ~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
...|.+.++.||+ +|+. .++.. ++......+..+|.++|++|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSR-ERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCC-CcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 8889999999995 5554 33333 366777788888999999984
No 98
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.13 E-value=6.5e-06 Score=89.23 Aligned_cols=92 Identities=16% Similarity=0.304 Sum_probs=69.1
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEec----------------------CCccc-------cchHHH
Q psy2377 6 TRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIE----------------------DTDIN-------RSTLSA 54 (340)
Q Consensus 6 ~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRie----------------------D~d~~-------r~~~~~ 54 (340)
+=-+|++||.|||||+++.++.|+++| ...|+.++.+= ++++. ....++
T Consensus 54 ~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~ 133 (912)
T PRK05743 54 HDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQ 133 (912)
T ss_pred eCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHH
Confidence 334799999999999999999999999 46788766422 22222 134566
Q ss_pred HHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 55 TQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 55 ~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
.+.+.+++..||+ +|+. +|... ++.........+|.++|++|.
T Consensus 134 ~~~~~~~~~~lG~~~dw~~-~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 134 VDIQREDFKRLGVLGDWDN-PYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHhCCcccCCC-CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7888899999999 8876 33333 366677778888999999885
No 99
>PLN02843 isoleucyl-tRNA synthetase
Probab=98.12 E-value=6.5e-06 Score=89.63 Aligned_cols=91 Identities=19% Similarity=0.304 Sum_probs=67.5
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc-----------------------ccc-------chHHH
Q psy2377 7 RFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD-----------------------INR-------STLSA 54 (340)
Q Consensus 7 RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d-----------------------~~r-------~~~~~ 54 (340)
==+|++||.|||||+++.++.|+++| ...|+.++.+-..| +.. ...++
T Consensus 38 ~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~ 117 (974)
T PLN02843 38 DGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKT 117 (974)
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999 46787776533222 111 13455
Q ss_pred HHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 55 TQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 55 ~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
++.+.+.+..||+ +|+. +|+.. ++.........+|.++|++|.
T Consensus 118 ~~~~~~~~~~lG~~~Dw~~-~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 118 VDTQRESFKRYGVWGDWEN-PYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHhCCceecCC-CCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 6677889999998 8876 44444 356667778888999999884
No 100
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=98.12 E-value=8.6e-06 Score=84.58 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=63.3
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCc-----------------------cc-------cchH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTD-----------------------IN-------RSTL 52 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d-----------------------~~-------r~~~ 52 (340)
=+|++||.||+||+++.++.|+++| ...|+.|+. .+-.+ .+ ....
T Consensus 30 ~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (601)
T PF00133_consen 30 PPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAE 109 (601)
T ss_dssp ---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhh
Confidence 4799999999999999999999999 568988775 22111 11 2346
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 53 SATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 53 ~~~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
++.+.+.+.+..||+ +|+. +|+.. ++.+.......+|.++|++|.
T Consensus 110 ~~~~~~~~~~~~lG~~~Dw~~-~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 110 EFIEEQKEQFKRLGVSIDWDR-EYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHTT--SECTC-EEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhheeeecccCC-ceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 677788899999995 6665 33333 356667777888999999984
No 101
>PLN02381 valyl-tRNA synthetase
Probab=98.12 E-value=7.8e-06 Score=89.68 Aligned_cols=92 Identities=23% Similarity=0.284 Sum_probs=69.0
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc---------------------------------cc
Q psy2377 6 TRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN---------------------------------RS 50 (340)
Q Consensus 6 ~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~---------------------------------r~ 50 (340)
+==+|++||.|||||+++.++.|+++| ...|+.|+.+-.+|.. ..
T Consensus 133 ~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~ 212 (1066)
T PLN02381 133 VLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKW 212 (1066)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHH
Confidence 334799999999999999999999999 4688877764433310 12
Q ss_pred hHHHHHHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 51 TLSATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 51 ~~~~~~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
..++...|.+.++.||+ +|+. .|+..+ +......+..+|.++|++|.
T Consensus 213 ~~~~~~~~~~q~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~L~~~GlIyr 263 (1066)
T PLN02381 213 KDEYGGTILNQLRRLGASLDWSR-ECFTMDEQRSKAVTEAFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHHHHHHHHhCchhccCC-ccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35667788889999994 6665 344443 66777788888999999985
No 102
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=98.11 E-value=1e-05 Score=76.51 Aligned_cols=194 Identities=21% Similarity=0.253 Sum_probs=116.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec-------CCc--cccchHHHHHHHHHH--HHHcCCCCCC-CCccccc
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE-------DTD--INRSTLSATQTIIDG--MKWLGLNYDE-GPFYQTK 78 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie-------D~d--~~r~~~~~~~~i~~~--l~~lGi~~d~-~~~~qS~ 78 (340)
-|||.|||||+... ..+...++.|...+.-|- |-+ +.+.+......+.+. +.++|++++. ..+.||+
T Consensus 13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 48999999966554 445555556655544433 223 346667777777777 8899999864 3678887
Q ss_pred cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEE
Q psy2377 79 RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWN 158 (340)
Q Consensus 79 ~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~ 158 (340)
..... ++...|.. .++..++..+..... ... |+... ++ +
T Consensus 92 ~~~~~-~~~~~l~~-------~~~~~~l~~~~~~~~----------~~~------------------~~~~~-~~-~--- 130 (292)
T PF00579_consen 92 WPEHM-ELWWFLSD-------VARLFSLNRMLRFKD----------VKK------------------RLKNG-EG-I--- 130 (292)
T ss_dssp HHCHH-HHHHHHHH-------HHBHHHHHHHHHHHH----------HHH------------------HHSST-TT-S---
T ss_pred ccccc-chhhhhcc-------cccccchhhhhhhcc----------ccc------------------ccccc-cC-c---
Confidence 44333 44443332 223334433321100 000 00000 00 0
Q ss_pred eccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCC----CCceEEecc
Q psy2377 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT----LPFYGHLPM 234 (340)
Q Consensus 159 D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~----~p~~~H~pl 234 (340)
+-|..+|-+--+.|=...+.++++.|.|-..+.-.-..+.+.+|.. .|...+.|+
T Consensus 131 ---------------------~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~ 189 (292)
T PF00579_consen 131 ---------------------SLGEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPL 189 (292)
T ss_dssp ---------------------BHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETC
T ss_pred ---------------------ceeeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecc
Confidence 0123355444444444566778999999988887778888889887 899999999
Q ss_pred eecCCCc-eecccCCCCChHHHHHcCCCHHHHHHHHHH
Q psy2377 235 VIDSNKV-KISKRKEATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 235 l~~~~g~-KLSKR~g~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+-+.+|. ||||+.++.+|- |. =+++.++..+..
T Consensus 190 l~~l~G~~KMSKS~~ns~I~-L~---d~~~~i~~Ki~~ 223 (292)
T PF00579_consen 190 LPGLDGQKKMSKSDPNSAIF-LD---DSPEEIRKKIKK 223 (292)
T ss_dssp BBSTTSSSBTTTTTTGGS-B-TT---TTHHHHHHHHHH
T ss_pred ccccCCccccCccCCccEEE-Ee---ccchhHHHHHHH
Confidence 9999999 999999874432 11 257777777665
No 103
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.10 E-value=8.4e-06 Score=90.03 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=69.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCcc---------------------------------ccchHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDI---------------------------------NRSTLS 53 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~---------------------------------~r~~~~ 53 (340)
+|++||.||+||+++.++.|+++| ...|+.|+++-.+|. ...+..
T Consensus 110 PPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~ 189 (1205)
T PTZ00427 110 PPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLK 189 (1205)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHH
Confidence 699999999999999999999999 468998887544331 012355
Q ss_pred HHHHHHHHHHHcC--CCCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLG--LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lG--i~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
+.+.+.+.++.|| ++|+. +|+..+ +.+....+..+|.++|++|.
T Consensus 190 ~~~~~~~~~~rlG~~iDw~~-~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 190 YSNEWVKTVERIGRWIDFKN-DYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHhCcEEecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 6777888899999 89986 444443 67777888889999999984
No 104
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=98.10 E-value=7.5e-06 Score=89.83 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=68.4
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc---------------------------------cchH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN---------------------------------RSTL 52 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~---------------------------------r~~~ 52 (340)
=+|+|||.|||||+++.++.|+++| ...|+-|+.+-.+|.- ....
T Consensus 55 pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~ 134 (1052)
T PRK14900 55 PPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKE 134 (1052)
T ss_pred CCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999 4688877764444311 0135
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCccc--cccHHHHHHHHHHHHHcCCccc
Q psy2377 53 SATQTIIDGMKWLGL--NYDEGPFYQ--TKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 53 ~~~~~i~~~l~~lGi--~~d~~~~~q--S~~~~~y~~~~~~L~~~G~aY~ 98 (340)
++.+.|.+.++.||+ +|+. +++. .++......+..+|.++|++|.
T Consensus 135 ~~~~~~~~~~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 135 QYGSRIGEQHKALGASLDWQR-ERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHhchheecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 677888899999995 6654 3333 3467778888889999999985
No 105
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.3e-05 Score=84.60 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=68.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc--------------------------------cchHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN--------------------------------RSTLSA 54 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~--------------------------------r~~~~~ 54 (340)
+|++||.||||||.+..+-|.++| +..|+-++=+-.+|.. ...+++
T Consensus 41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~ 120 (877)
T COG0525 41 PPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES 120 (877)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 699999999999999999999999 4688877654333321 125778
Q ss_pred HHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 55 TQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 55 ~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
...|.+.|..||. +|+.+ ++.- .+....++..-+|.++|..|+
T Consensus 121 ~~~I~~Q~~rLG~S~DWsrE-~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 121 GGTIREQLRRLGVSVDWSRE-RFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHhCCCcccccc-cccCCHHHHHHHHHHHHHHHHCCceee
Confidence 8889999999996 55543 2332 366778888889999999995
No 106
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.05 E-value=1.1e-05 Score=88.05 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=68.1
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc--------------------------c-------ccchH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD--------------------------I-------NRSTL 52 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d--------------------------~-------~r~~~ 52 (340)
-+|+|||.||+||+++.++.|+++| ...|+.|++.=..| . ...+.
T Consensus 48 ~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~ 127 (975)
T PRK06039 48 GPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVL 127 (975)
T ss_pred CCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHH
Confidence 4799999999999999999999999 46898887632221 0 12356
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 53 SATQTIIDGMKWLG--LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 53 ~~~~~i~~~l~~lG--i~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
.+.+.+.+.++.|| ++|+. +|...+ +.+.......+|.++|++|.
T Consensus 128 ~~~~~~~~~~~rlG~~~Dw~~-~y~T~d~~y~~~v~~~F~~l~~kGliyr 176 (975)
T PRK06039 128 RYTDEWEEYTERLGRWVDFDN-PYKTLDNEYMESVWWALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHHHHHhCceeecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67788888899999 68875 344443 55666667779999999985
No 107
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=98.02 E-value=6.9e-06 Score=89.29 Aligned_cols=93 Identities=19% Similarity=0.078 Sum_probs=65.5
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCc---------------------------------
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTD--------------------------------- 46 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d--------------------------------- 46 (340)
++==.|+|||.||+||+++.++.|+++| ...|+-|+. .+.++
T Consensus 29 i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~ 108 (938)
T TIGR00395 29 LTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELL 108 (938)
T ss_pred EecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHH
Confidence 3444799999999999999999999999 467876654 11111
Q ss_pred ----cccchHHHHHHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 47 ----INRSTLSATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 47 ----~~r~~~~~~~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
+......+...+.++++.||+ +|+. .+...+ +....+....+|.++|++|.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r-~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 109 KFTDPEYIVEYFSREAESACKSMGYSIDWRR-SFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHhCceEECCC-CccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 112235566788889999996 5654 333333 55566677778999999984
No 108
>PLN02882 aminoacyl-tRNA ligase
Probab=98.02 E-value=1.4e-05 Score=88.29 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=69.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCcc-----------------c----------------cchHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDI-----------------N----------------RSTLS 53 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~-----------------~----------------r~~~~ 53 (340)
+|++||.+|+||+++.++.|+++| ...|+.|+++-..|. . ..+..
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 799999999999999999999999 468888887433321 0 12456
Q ss_pred HHHHHHHHHHHcC--CCCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLG--LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lG--i~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
|.+.+.+.+..|| ++|+. +|...+ +.+.......+|.++|++|.
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~-~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFEN-DYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7778888899999 78886 444443 66777788889999999984
No 109
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.94 E-value=2.6e-05 Score=84.94 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=65.8
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc-------------------------cc-------cchHH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD-------------------------IN-------RSTLS 53 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d-------------------------~~-------r~~~~ 53 (340)
-+|+|||.||+||+++.++.|+++| ...|+.++.+=..| +. ....+
T Consensus 61 gPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~ 140 (961)
T PRK13804 61 GPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALS 140 (961)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999 46788776522211 10 12345
Q ss_pred HHHHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
+++.+.+.+..||+ +|+. +|...+ +.........+|.++|++|+
T Consensus 141 ~i~~~~~~~~rlG~~~Dw~~-~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 141 WIDVQREEFKRLGVLGDWDN-PYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHhCceecCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 66777889999997 5765 444443 55666777788999999884
No 110
>KOG0432|consensus
Probab=97.65 E-value=0.0001 Score=77.04 Aligned_cols=90 Identities=29% Similarity=0.343 Sum_probs=68.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc---------------------------------cchHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN---------------------------------RSTLS 53 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~---------------------------------r~~~~ 53 (340)
+|+.||.||||||-|..+-|.++| +..|+-++=+-.+|.. ...++
T Consensus 83 PPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e 162 (995)
T KOG0432|consen 83 PPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEE 162 (995)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHH
Confidence 699999999999999999999999 5688877765554422 12467
Q ss_pred HHHHHHHHHHHcC--CCCCCCCcccc-ccHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLG--LNYDEGPFYQT-KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lG--i~~d~~~~~qS-~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+...|.+.|+.|| ++|+..-+.=. +.-....++..+|.++|..|+
T Consensus 163 ~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR 210 (995)
T KOG0432|consen 163 YGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYR 210 (995)
T ss_pred hCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEe
Confidence 7788999999999 57775322222 244667888899999999996
No 111
>PLN02959 aminoacyl-tRNA ligase
Probab=97.60 E-value=0.00017 Score=79.52 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=34.8
Q ss_pred eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 229 YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 229 ~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
+...++++ .+|+||||+.|+ ++..++++. |.++++|.||+..+
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~ 749 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAG 749 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcC
Confidence 44445554 699999999997 788888876 99999999998753
No 112
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=97.49 E-value=0.0012 Score=69.04 Aligned_cols=84 Identities=15% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCC-CCceEEecceecCC-C-ceecccCC--CCChHHHH
Q psy2377 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDSN-K-VKISKRKE--ATDIMYYK 256 (340)
Q Consensus 182 G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~-~p~~~H~pll~~~~-g-~KLSKR~g--~~~l~~l~ 256 (340)
|..+|-+--+.|=...+.++|.-|.|-....-.-..+++.+|.. .|...|.+++.+-+ | .||||+.. ++.|.+
T Consensus 159 gll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D-- 236 (682)
T PTZ00348 159 AQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED-- 236 (682)
T ss_pred HHHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC--
Confidence 33344333333333557888988999743333334555778853 56666778887764 3 69999984 344432
Q ss_pred HcCCCHHHHHHHHHH
Q psy2377 257 KKGFLPEAILNYLAR 271 (340)
Q Consensus 257 ~~G~~p~al~~~l~~ 271 (340)
+|+.++.-+..
T Consensus 237 ----spe~I~kKI~k 247 (682)
T PTZ00348 237 ----TEEDVARKIRQ 247 (682)
T ss_pred ----CHHHHHHHHHh
Confidence 56666666653
No 113
>KOG4426|consensus
Probab=97.42 E-value=0.00098 Score=65.04 Aligned_cols=282 Identities=18% Similarity=0.221 Sum_probs=135.9
Q ss_pred eEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCccc-cchHHHHHHHHHHHH-HcCCCCCCC----Cc
Q psy2377 4 VRTRF-APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDIN-RSTLSATQTIIDGMK-WLGLNYDEG----PF 74 (340)
Q Consensus 4 ~~~Rf-aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~~-r~~~~~~~~i~~~l~-~lGi~~d~~----~~ 74 (340)
+++-| +|+----||+||+|+.++++.++| +..|.-|+|++-+++= -+---.++.+.+.+- .+...++-+ .|
T Consensus 190 vlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFY 269 (656)
T KOG4426|consen 190 VLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFY 269 (656)
T ss_pred EEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHH
Confidence 44555 466667899999999999999999 7899999998866531 111111222211110 112222211 12
Q ss_pred cccc-cHHH---HHHHHH----HHHHcC------CcccccCCHHHHHHHHHHH----HhcCCCCCCCCCCCCCCCCCCCC
Q psy2377 75 YQTK-RINR---YFEIIN----YLLSND------YAYYCYSSVEEIESFRKKQ----RSFGEKPRYNRIWRPEPGKILPS 136 (340)
Q Consensus 75 ~qS~-~~~~---y~~~~~----~L~~~G------~aY~c~cs~~~l~~~~~~~----~~~~~~~~Y~g~cr~~~~~~e~~ 136 (340)
..|. |++. +.+-|. +|.... ++-.|.-||.+.....+.. ...| ..-|.....+. .++
T Consensus 270 keSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~G-ESFYq~~m~~v--vee-- 344 (656)
T KOG4426|consen 270 KESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERG-ESFYQDRMAEV--VEE-- 344 (656)
T ss_pred HHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcc-hhhhhhHHHHH--HHH--
Confidence 2332 2221 222221 122111 1235888888876653311 1111 11121111000 000
Q ss_pred CCCCCCceEEEeCCCCCceeEEeccce-eeeecCCCCCCeEEEecCCCcchhhHHHhh----hhcCCCcEEEeCCCCCCc
Q psy2377 137 IPINRKPVIRFKNPLYGNITWNDLIKG-KITISNKELDDLVIVRADGIPTYNFCAAID----DWDMKITHVIRGDDHINN 211 (340)
Q Consensus 137 ~~~~~~~~~Rl~~~~~~~~~~~D~i~G-~~~~~~~~~~DfVl~R~dG~ptY~la~vvD----D~~~githvIrG~D~~~~ 211 (340)
++. .|.+...| | ++.|....---..+.||||-+||.-++..- =..+.-..+|--.|-=.+
T Consensus 345 ----------l~~--kglvee~~---Gr~i~f~~g~~IPLtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs 409 (656)
T KOG4426|consen 345 ----------LKS--KGLVEEDD---GRRIMFPEGCDIPLTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQS 409 (656)
T ss_pred ----------Hhc--CCceeecC---CceEeccCCCCcceEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEeeCchh
Confidence 111 12222222 2 222322211225678999999997555410 012223334432232223
Q ss_pred HHHHHHH--HHHhCCCCC---ceEEe--cceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccC
Q psy2377 212 TPRQINI--LKALGVTLP---FYGHL--PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFS 283 (340)
Q Consensus 212 t~~q~~l--~~aLg~~~p---~~~H~--pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~ 283 (340)
+..+..+ .+..||-.| ...|+ .++++.+++|.-.|.|. +-+.+|+++|... -...|...|- ....|
T Consensus 410 ~Hf~t~fkAar~~gwld~~~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kR--s~~~Liergr----dk~~t 483 (656)
T KOG4426|consen 410 QHFNTIFKAARKAGWLDPTYPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKR--SKEKLIERGR----DKVLT 483 (656)
T ss_pred HHHHHHHHHHHHcCccCCCccceeeeeeeeEEccCcccccccccceeeHHHHHHHHHHH--HHHHHHHhcc----cccCC
Confidence 3333222 234577544 55676 58999999999999985 5677777654322 1112222332 12244
Q ss_pred HHHHHHh----------hcccCcCCCCCccccHHHHHH
Q psy2377 284 IKQFCYW----------FNDCKYLSKSPAQFNLKKLEW 311 (340)
Q Consensus 284 ~~~~~~~----------f~~~~~~~~~~~~~d~~kl~~ 311 (340)
.+|+-+. +.|++.-.-+..+|+.+++..
T Consensus 484 peeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~ 521 (656)
T KOG4426|consen 484 PEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLE 521 (656)
T ss_pred HHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhh
Confidence 4443221 333666666677788777753
No 114
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=97.27 E-value=0.0039 Score=61.24 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=50.1
Q ss_pred CcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCC
Q psy2377 183 IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKE 248 (340)
Q Consensus 183 ~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g 248 (340)
.++|.+--+.|=.....+.++-|.|-..|.-.=..|.+.++-..+.-..+||+.+.+|.||||+.|
T Consensus 162 ef~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~ 227 (377)
T TIGR00234 162 EFIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGG 227 (377)
T ss_pred hhhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCC
Confidence 345555555554445666788999999988888888888876556667789998889999999975
No 115
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.93 E-value=0.0039 Score=68.17 Aligned_cols=74 Identities=20% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCcEEEeCCCCCCcHHHHHHHHHHhCCC---CC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 198 KITHVIRGDDHINNTPRQINILKALGVT---LP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~~aLg~~---~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
.++..+-|.|++.+-.-.-.+..+..++ .| .+.|.++++. +|+||||+.|+ +++.++++. +.++++|.||+..
T Consensus 573 P~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~-yGaDalRl~Ll~~ 650 (938)
T TIGR00395 573 PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEK-FGADVARLYIADA 650 (938)
T ss_pred CceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhc
Confidence 3444466999976422222233333433 46 5677777765 89999999997 789999987 9999999999986
Q ss_pred C
Q psy2377 273 G 273 (340)
Q Consensus 273 G 273 (340)
|
T Consensus 651 ~ 651 (938)
T TIGR00395 651 A 651 (938)
T ss_pred C
Confidence 5
No 116
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.81 E-value=0.0044 Score=67.25 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCcEEEeCCCCCCcHHHHHHHHH---HhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 198 KITHVIRGDDHINNTPRQINILK---ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~~---aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
.++..+-|.|++..= .|..++. ..|..+| ...-++++++.+|+|||||+|+ ++..++++. +.++++|.||+..
T Consensus 564 P~d~~i~G~Di~r~W-f~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRGW-FYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhccH-HHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC
Confidence 455667799997531 2222222 2265555 3444566667799999999997 788899976 9999999999976
No 117
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=96.81 E-value=0.0032 Score=65.57 Aligned_cols=76 Identities=24% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCCcEEEeCCCCCCcHHHHHHH-HHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 197 MKITHVIRGDDHINNTPRQINI-LKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 197 ~githvIrG~D~~~~t~~q~~l-~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
..++-.+-|.|++.+=-....+ ..++--+.| ....++++++.+|+||||++|+ ++..+++++ +.++++|.+++..
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~ 591 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASS 591 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhc
Confidence 4678888899998654433333 334433334 5677789999999999999997 788999987 9999999999865
Q ss_pred C
Q psy2377 273 G 273 (340)
Q Consensus 273 G 273 (340)
+
T Consensus 592 ~ 592 (601)
T PF00133_consen 592 A 592 (601)
T ss_dssp S
T ss_pred C
Confidence 4
No 118
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0083 Score=59.09 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=52.9
Q ss_pred cchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC
Q psy2377 184 PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA 249 (340)
Q Consensus 184 ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~ 249 (340)
+.|.+--+.|=...+..--+-|.|-..|.-.=..+.+.+|..++.-.|+|||.+.+|.||||+.|.
T Consensus 166 f~YpLmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 166 FNYPLLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred hhhHHHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCC
Confidence 356665565555555554488999998888878888999998888999999999999999999874
No 119
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.63 E-value=0.0072 Score=66.35 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=53.3
Q ss_pred CCCcEEEeCCCCCCcHHHHHHHH--HHhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 197 MKITHVIRGDDHINNTPRQINIL--KALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 197 ~githvIrG~D~~~~t~~q~~l~--~aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
...+.++-|.|++..=..-..+. ..+|.+++ ....++++++.+|+|||||.|+ ++..+++++ +.++++|.||+..
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls~ 622 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLSS 622 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHhC
Confidence 34555567999864322222211 12244433 4566677888899999999997 788899986 9999999999987
Q ss_pred CC
Q psy2377 273 GW 274 (340)
Q Consensus 273 G~ 274 (340)
+.
T Consensus 623 ~~ 624 (975)
T PRK06039 623 SA 624 (975)
T ss_pred CC
Confidence 64
No 120
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=96.61 E-value=0.0052 Score=66.89 Aligned_cols=72 Identities=17% Similarity=0.057 Sum_probs=50.4
Q ss_pred cEEEeCCCCCCcHHHHHHHHHHhCC---CCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 200 THVIRGDDHINNTPRQINILKALGV---TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 200 thvIrG~D~~~~t~~q~~l~~aLg~---~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
+..+-|.|++.+---...+..+..+ +.| ...++++++. +|+|||||.|+ ++..++.++ +.++++|.||+..+
T Consensus 532 D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~~ 608 (897)
T PRK12300 532 DWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSSA 608 (897)
T ss_pred eEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhCC
Confidence 4446689987542111122233333 335 5667777777 89999999997 788898876 99999999999754
No 121
>KOG1195|consensus
Probab=96.46 E-value=0.025 Score=56.42 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCcch---hhHHHhhhhc-CCCcEEE----eCCCCCCcHHHHHHHHHHhCCCC-CceEEecceecCCCce
Q psy2377 172 LDDLVIVRADGIPTY---NFCAAIDDWD-MKITHVI----RGDDHINNTPRQINILKALGVTL-PFYGHLPMVIDSNKVK 242 (340)
Q Consensus 172 ~~DfVl~R~dG~ptY---~la~vvDD~~-~githvI----rG~D~~~~t~~q~~l~~aLg~~~-p~~~H~pll~~~~g~K 242 (340)
.+=-++.|+||..-| ++|-++|-.. ......| +|.+-+-+ .-..+.+++|++. -...|+++= -+..
T Consensus 293 ~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~--~lf~ilk~mg~~~a~~~qHV~~G---~v~G 367 (567)
T KOG1195|consen 293 AGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFC--QLFEILKKMGFDWAKKLQHVNFG---RVQG 367 (567)
T ss_pred cceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHHH--HHHHHHHHhCchhhhhcceeccc---cccc
Confidence 355788899998888 5666665322 2233333 33333221 1234568889875 368999874 3568
Q ss_pred ecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHh-------hcccCcCCCCCccccHHHHHHHHH
Q psy2377 243 ISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYW-------FNDCKYLSKSPAQFNLKKLEWLNN 314 (340)
Q Consensus 243 LSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~-------f~~~~~~~~~~~~~d~~kl~~~n~ 314 (340)
||.|+|+ ..+.+..++ .-+.+.+.++.--..+ ....++++..+. ++|++.-..+...|+|+....+|+
T Consensus 368 msTRkG~~~fl~dil~e--~re~m~e~M~s~~t~~--~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~g 443 (567)
T KOG1195|consen 368 MSTRKGKVVFLDDILEE--AREQMLEVMASNKTKP--VQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEG 443 (567)
T ss_pred ccccCCceeeHHHHHHH--HHHHHHHHHHhccCCC--CCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecC
Confidence 9999997 445665554 2355666666432111 111223332111 222334444556666666665543
No 122
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0055 Score=65.91 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=65.8
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCcEEEEec-------------------------CCccc-------cchHH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYARH--FNGIFILRIE-------------------------DTDIN-------RSTLS 53 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar~--~~G~~vlRie-------------------------D~d~~-------r~~~~ 53 (340)
-+|..||.+|||||.+=++-|++.|. ..|+.+-++= +.... ....+
T Consensus 56 GPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~ 135 (933)
T COG0060 56 GPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALE 135 (933)
T ss_pred CCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHH
Confidence 37999999999999999999999994 5677655422 11111 12455
Q ss_pred HHHHHHHHHHHcCC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lGi--~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+++...+++..||+ +|+. ||..- ++.+....+..++.++|++|.
T Consensus 136 ~v~~q~~~f~RLGv~~Dw~n-pY~Tmd~~ye~~~~~~f~~~~~kGllyr 183 (933)
T COG0060 136 QVDEQKEQFKRLGVWGDWEN-PYKTMDPSYEESVWWAFKELYEKGLLYR 183 (933)
T ss_pred HHHHHHHHHHhheEeeccCC-CeecCCHHHHHHHHHHHHHHHHCCCeec
Confidence 66777788999996 7765 55443 466777788889999999884
No 123
>PLN02882 aminoacyl-tRNA ligase
Probab=96.41 E-value=0.012 Score=65.49 Aligned_cols=75 Identities=17% Similarity=0.074 Sum_probs=52.3
Q ss_pred CCcEEEeCCCCCCcHHHHHHHH--HHhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 198 KITHVIRGDDHINNTPRQINIL--KALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~--~aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
-.+.++-|.|.+..=+.-..+. ..+|.++| ....++++++.+|+|||||.|+ +...++.++ |.+++||.||+.-.
T Consensus 567 PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 567 PADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLINSP 645 (1159)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHhCC
Confidence 3555566778765322211111 12356665 4677789989999999999997 677788875 99999999998643
No 124
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.40 E-value=0.015 Score=63.40 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=51.9
Q ss_pred CCCcEEEeCCCCCCcHHHHHHHHHH---hCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 197 MKITHVIRGDDHINNTPRQINILKA---LGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 197 ~githvIrG~D~~~~t~~q~~l~~a---Lg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
...+..+-|.|++..= .|..++.+ .|.++| ....++++++.+|+||||+.|+ ++..++.++ |.++++|.|++.
T Consensus 544 ~P~Dl~~~G~Di~r~W-f~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHRGW-FQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccchH-HHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh
Confidence 3455557799997422 22222222 455555 4566678888899999999997 678888875 999999999996
No 125
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=96.38 E-value=0.0062 Score=66.27 Aligned_cols=82 Identities=20% Similarity=0.133 Sum_probs=57.9
Q ss_pred CchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc-------------------------------------cchHH
Q psy2377 16 LHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN-------------------------------------RSTLS 53 (340)
Q Consensus 16 LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~-------------------------------------r~~~~ 53 (340)
||+||+++.++.|+++| ...|+.|++ .+.++-+ .....
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999999 468988876 2222211 11233
Q ss_pred HHHHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
+.+.+.+++..||+ +|+. .|...+ +..-......+|.++|++|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r-~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRR-EFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCC-CeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 44778899999995 7765 344443 55556666778999999985
No 126
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.016 Score=61.80 Aligned_cols=74 Identities=26% Similarity=0.148 Sum_probs=56.7
Q ss_pred CcEEEeCCCCC-CcHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 199 ITHVIRGDDHI-NNTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 199 ithvIrG~D~~-~~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
.+-.+-|-|.+ .-..+.+..--.|.-+.| ...-++|+.+.+|+||||++|+ +...+++++ |..+|||.+|+.++
T Consensus 479 t~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~~~ 556 (877)
T COG0525 479 TDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLASLA 556 (877)
T ss_pred CccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHhcc
Confidence 34446688876 456777777666766677 3444578899999999999997 667778876 89999999999875
No 127
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=96.24 E-value=0.015 Score=63.27 Aligned_cols=73 Identities=25% Similarity=0.130 Sum_probs=49.9
Q ss_pred cEEEeCCCCCCcHH-HHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 200 THVIRGDDHINNTP-RQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 200 thvIrG~D~~~~t~-~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
+..+-|.|.+..=+ +.+..--++-...| ...-++++++.+|+|||||.|+ +...+++++ +.++++|.+|+..+
T Consensus 475 d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-yGaDalR~~ll~~~ 551 (874)
T PRK05729 475 SVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-YGADALRFTLAALA 551 (874)
T ss_pred ccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHH-hChHHHHHHHHhCC
Confidence 33355778765322 22222112222345 4566678888899999999997 788888876 99999999999864
No 128
>PLN02843 isoleucyl-tRNA synthetase
Probab=95.99 E-value=0.018 Score=63.12 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=50.8
Q ss_pred CcEEEeCCCCCCc-HHHHHHHHH-HhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHc--------CCCHHHHH
Q psy2377 199 ITHVIRGDDHINN-TPRQINILK-ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK--------GFLPEAIL 266 (340)
Q Consensus 199 ithvIrG~D~~~~-t~~q~~l~~-aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~--------G~~p~al~ 266 (340)
.+..+=|.|.+.. -...++... +.|..++ .+..++++++.+|+||||+.|+ ++..++.+. .+.+++||
T Consensus 565 aDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR 644 (974)
T PLN02843 565 ADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLR 644 (974)
T ss_pred ceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHH
Confidence 3334568888741 222222222 3354443 3444589999999999999997 788888872 38999999
Q ss_pred HHHHHhCC
Q psy2377 267 NYLARLGW 274 (340)
Q Consensus 267 ~~l~~lG~ 274 (340)
.|++....
T Consensus 645 ~~l~~~~~ 652 (974)
T PLN02843 645 LWVASVDY 652 (974)
T ss_pred HHHHhccc
Confidence 99986443
No 129
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=95.51 E-value=0.051 Score=60.79 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCcEEEeCCCCCC-cHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 198 KITHVIRGDDHIN-NTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 198 githvIrG~D~~~-~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
-.+.++=|.|.+. -..+.+.+--++--..| ...-++++++.+|+|||||.|+ +.-.++.+. |.+++||.||+.-+
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcC
Confidence 3555566888863 33344444334433455 4555678889999999999997 566677765 89999999999753
No 130
>PLN02943 aminoacyl-tRNA ligase
Probab=95.50 E-value=0.04 Score=60.50 Aligned_cols=69 Identities=25% Similarity=0.234 Sum_probs=49.4
Q ss_pred CcEEEeCCCCCCcHHHHHHHHH--HhCC----CCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHH
Q psy2377 199 ITHVIRGDDHINNTPRQINILK--ALGV----TLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYL 269 (340)
Q Consensus 199 ithvIrG~D~~~~t~~q~~l~~--aLg~----~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l 269 (340)
.+..+-|.|.+. -|++. ++|. ..| .+.-++++++.+|+||||+.|+ ++..++++. |.++++|.||
T Consensus 537 ~dl~~~G~Dii~-----fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l 610 (958)
T PLN02943 537 TTVLETGHDILF-----FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTL 610 (958)
T ss_pred CeEEEEeehHHH-----HHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHH
Confidence 344455888873 13333 2232 335 4566677778899999999997 788899976 9999999999
Q ss_pred HHhC
Q psy2377 270 ARLG 273 (340)
Q Consensus 270 ~~lG 273 (340)
+.-+
T Consensus 611 ~~~~ 614 (958)
T PLN02943 611 ALGT 614 (958)
T ss_pred HhCC
Confidence 8744
No 131
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=95.44 E-value=0.043 Score=60.21 Aligned_cols=71 Identities=14% Similarity=0.052 Sum_probs=49.4
Q ss_pred cEEEeCCCCCCcHHHHHHHHHHh---CCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 200 THVIRGDDHINNTPRQINILKAL---GVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 200 thvIrG~D~~~~t~~q~~l~~aL---g~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
+..+-|.|.+. .=.|..++.++ |..|+ ...-++++++.+|+||||+.|+ +...++.+. +.++++|.|++.-
T Consensus 585 D~~~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~lls~ 660 (961)
T PRK13804 585 DLYLEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLWVASV 660 (961)
T ss_pred eEEEEEccccc-HHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHHHHhC
Confidence 34456888863 12333444444 33444 3444488888899999999997 678888875 9999999999963
No 132
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=95.11 E-value=0.061 Score=59.63 Aligned_cols=45 Identities=29% Similarity=0.251 Sum_probs=38.3
Q ss_pred ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 228 FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 228 ~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
...-++++++.+|+||||+.|+ ++..++++. |.+|++|.||+..+
T Consensus 524 ~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~ 569 (1052)
T PRK14900 524 TVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALT 569 (1052)
T ss_pred eeEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcC
Confidence 3566678888899999999997 788888876 99999999999754
No 133
>PLN02959 aminoacyl-tRNA ligase
Probab=94.72 E-value=0.069 Score=59.34 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=31.2
Q ss_pred EEEeC-CCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE
Q psy2377 5 RTRFA-PSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR 41 (340)
Q Consensus 5 ~~Rfa-PsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR 41 (340)
..=|+ |++||.|||||++|.+..++++| ...|+.|+.
T Consensus 48 ~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 48 FGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 34455 99999999999999999999999 467887665
No 134
>PLN02381 valyl-tRNA synthetase
Probab=94.59 E-value=0.087 Score=58.45 Aligned_cols=78 Identities=19% Similarity=0.107 Sum_probs=52.4
Q ss_pred CCCcEEEeCCCCCC-cHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHc--------------
Q psy2377 197 MKITHVIRGDDHIN-NTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK-------------- 258 (340)
Q Consensus 197 ~githvIrG~D~~~-~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~-------------- 258 (340)
.-.+..+-|.|.+. -..+.+.+--++.-..| ...-++++++.+|+||||+.|+ +...++++.
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 34565677888763 23333333223444556 4566689999999999999997 555566541
Q ss_pred ----------------------CCCHHHHHHHHHHhCC
Q psy2377 259 ----------------------GFLPEAILNYLARLGW 274 (340)
Q Consensus 259 ----------------------G~~p~al~~~l~~lG~ 274 (340)
-|.+++||.+|+..+.
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~ 724 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTA 724 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCc
Confidence 2689999999997653
No 135
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=94.51 E-value=0.061 Score=59.35 Aligned_cols=76 Identities=22% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCC-cHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHc---------------
Q psy2377 198 KITHVIRGDDHIN-NTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK--------------- 258 (340)
Q Consensus 198 githvIrG~D~~~-~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~--------------- 258 (340)
..+..+-|.|.+. -..+.+.+--++.-+.| ....++++++.+|+||||+.|+ +...++.+.
T Consensus 538 P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~ 617 (995)
T PTZ00419 538 PTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNL 617 (995)
T ss_pred CCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcccc
Confidence 4555567888753 23333333222322556 4667788899999999999997 445555541
Q ss_pred ---------------------CCCHHHHHHHHHHhC
Q psy2377 259 ---------------------GFLPEAILNYLARLG 273 (340)
Q Consensus 259 ---------------------G~~p~al~~~l~~lG 273 (340)
-|.++++|.+|+..+
T Consensus 618 ~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~ 653 (995)
T PTZ00419 618 PEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYT 653 (995)
T ss_pred chhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcC
Confidence 378999999999854
No 136
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.23 E-value=0.061 Score=57.44 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=51.3
Q ss_pred hcCCCcEEEeCCCCCCcHHHHHHHHH-Hh---C-CCC--Cc--eEEecceecCCCceecccCCC-CChHHHHHcCCCHHH
Q psy2377 195 WDMKITHVIRGDDHINNTPRQINILK-AL---G-VTL--PF--YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEA 264 (340)
Q Consensus 195 ~~~githvIrG~D~~~~t~~q~~l~~-aL---g-~~~--p~--~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~a 264 (340)
+-+.|+.-|-|.||..+--....+.+ +| | |+. |- -..-.+++..+|.||||++|+ +++++..++ |.+++
T Consensus 523 yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yGADt 601 (814)
T COG0495 523 YWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YGADT 601 (814)
T ss_pred cccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hCchH
Confidence 34677777889999543322222222 22 2 222 31 222235555579999999997 799999987 99999
Q ss_pred HHHHHHHhC
Q psy2377 265 ILNYLARLG 273 (340)
Q Consensus 265 l~~~l~~lG 273 (340)
+|-|++..|
T Consensus 602 ~Rl~~m~~a 610 (814)
T COG0495 602 VRLYIMFAA 610 (814)
T ss_pred HHHHHHhhC
Confidence 999999876
No 137
>PLN02563 aminoacyl-tRNA ligase
Probab=93.59 E-value=0.082 Score=57.93 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred eecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 242 KISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 242 KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
||||++|+ +...+++++ |.++++|.|++..+
T Consensus 723 KMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~a 754 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMG 754 (963)
T ss_pred ccccccCCcCCHHHHHHH-cCcHHHHHHHHhCC
Confidence 99999997 788888876 99999999999865
No 138
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=93.22 E-value=0.096 Score=56.76 Aligned_cols=76 Identities=24% Similarity=0.213 Sum_probs=53.0
Q ss_pred cCCCcEEEeCCCCCCc-----HHHHHHHHHHhC---CCCC--ceEEecceec----CCCc--------------------
Q psy2377 196 DMKITHVIRGDDHINN-----TPRQINILKALG---VTLP--FYGHLPMVID----SNKV-------------------- 241 (340)
Q Consensus 196 ~~githvIrG~D~~~~-----t~~q~~l~~aLg---~~~p--~~~H~pll~~----~~g~-------------------- 241 (340)
.+-++..|-|.||... .-.|..|+. .| -..| .....+++++ .+|+
T Consensus 518 ~~PvD~yi~G~dhailHLlyaRf~~~~l~~-~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 596 (842)
T TIGR00396 518 WLPVDLYIGGAEHAILHLLYARFWHKFLYD-IGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGE 596 (842)
T ss_pred cCCCcEeeccHHHHHHHHHHHHHHHHHHHh-ccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCc
Confidence 4568888889998321 223333322 23 2345 3455567777 7888
Q ss_pred -------eecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 242 -------KISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 242 -------KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
|||||+|+ +++.+++++ +.++++|.|++..+
T Consensus 597 ~~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~ 635 (842)
T TIGR00396 597 LVVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMG 635 (842)
T ss_pred ccccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999997 789999986 99999999998654
No 139
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=93.20 E-value=0.14 Score=55.36 Aligned_cols=69 Identities=23% Similarity=0.160 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCCc-----HHHHHHHHHHhC---CCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHH
Q psy2377 197 MKITHVIRGDDHINN-----TPRQINILKALG---VTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAI 265 (340)
Q Consensus 197 ~githvIrG~D~~~~-----t~~q~~l~~aLg---~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al 265 (340)
+-++..+-|.||+.. .--+.. +...| -..| ...|.+++ ||||+.|+ ++..+++++ +.++++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~-l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~-ygaD~l 593 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKV-LRDLGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEK-YGADTA 593 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHH-HHHhhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHH-cChHHH
Confidence 568878889998543 222222 22233 2345 56777777 99999997 788999976 999999
Q ss_pred HHHHHHhC
Q psy2377 266 LNYLARLG 273 (340)
Q Consensus 266 ~~~l~~lG 273 (340)
|.|++..+
T Consensus 594 Rl~l~~~~ 601 (805)
T PRK00390 594 RLFEMFAG 601 (805)
T ss_pred HHHHHhcC
Confidence 99998754
No 140
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.11 Score=56.28 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=48.0
Q ss_pred cEEEeCCCCCC-cHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 200 THVIRGDDHIN-NTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 200 thvIrG~D~~~-~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
+.++-|.|-+. -=-.+..+--++--..| ...-+.++++++|+|||||.|+ +.-.++.++ +.+++||.|++.--
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ssd 633 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASSD 633 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeecC
Confidence 45566777652 11111111122222445 4566788999999999999997 567777765 88999999998643
No 141
>KOG0433|consensus
Probab=89.46 E-value=1.5 Score=46.21 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=58.8
Q ss_pred CCCcCchhHHHHHHHHHHHHHH--cCCcEEEE----------ecCCc-----cc----------c-----chHHHHHHHH
Q psy2377 12 PTGNLHIGGIRTALFSWAYARH--FNGIFILR----------IEDTD-----IN----------R-----STLSATQTII 59 (340)
Q Consensus 12 PtG~LHiG~~rtal~~~~~ar~--~~G~~vlR----------ieD~d-----~~----------r-----~~~~~~~~i~ 59 (340)
.+|.||+||++.-++.++.-|. ..|+.++- ||-+. +. | ...++++..+
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~ 145 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM 145 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998883 56665553 33211 00 1 1355666667
Q ss_pred HHHHHcCC--CCCCCCcc--ccccHHHHHHHHHHHHHcCCcccc
Q psy2377 60 DGMKWLGL--NYDEGPFY--QTKRINRYFEIINYLLSNDYAYYC 99 (340)
Q Consensus 60 ~~l~~lGi--~~d~~~~~--qS~~~~~y~~~~~~L~~~G~aY~c 99 (340)
+.+...|+ +|.. +|. +.++...-.++..+|.++|.+|+.
T Consensus 146 e~F~r~gv~aDW~n-~Y~T~~~~ye~aQL~iF~~lyekgLvyR~ 188 (937)
T KOG0433|consen 146 EAFRRWGVTADWEN-PYVTKSPSYEAAQLDIFAKLYEKGLVYRS 188 (937)
T ss_pred HHHHHheeeccCCC-ceeecChHHHHHHHHHHHHHHhccceecc
Confidence 77888898 5543 443 444655556777789999998863
No 142
>KOG0432|consensus
Probab=88.95 E-value=0.66 Score=49.51 Aligned_cols=45 Identities=24% Similarity=0.136 Sum_probs=34.9
Q ss_pred CCCCC-CcHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC
Q psy2377 205 GDDHI-NNTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA 249 (340)
Q Consensus 205 G~D~~-~~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~ 249 (340)
|.|.+ --++|+..|-..|.-+.| ...-+|++.+..|+||||+.|+
T Consensus 553 G~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGN 600 (995)
T KOG0432|consen 553 GHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGN 600 (995)
T ss_pred CchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhcc
Confidence 55553 467888888666665666 5667799999999999999997
No 143
>KOG0434|consensus
Probab=88.73 E-value=1.6 Score=45.73 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=62.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE----------ec-CCccc----------------------cchHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR----------IE-DTDIN----------------------RSTLS 53 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR----------ie-D~d~~----------------------r~~~~ 53 (340)
+|-.||-.|-||+.+..+-++..| ...|.+|-| +| .+|.+ ..+-.
T Consensus 46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmr 125 (1070)
T KOG0434|consen 46 PPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMR 125 (1070)
T ss_pred CccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHH
Confidence 688999999999999999999999 468888876 11 11211 12455
Q ss_pred HHHHHHHHHHHcC--CCCCCCCccccc---cHHHHHHHHHHHHHcCCccc
Q psy2377 54 ATQTIIDGMKWLG--LNYDEGPFYQTK---RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 54 ~~~~i~~~l~~lG--i~~d~~~~~qS~---~~~~y~~~~~~L~~~G~aY~ 98 (340)
|..+.......|| |++|.+ |.+- -++-.--+..+|.++|.+|+
T Consensus 126 YssEWe~tv~RlGRWidF~nd--YkTmyp~FMESvWwvFkeL~~kglVYR 173 (1070)
T KOG0434|consen 126 YSSEWEKTVERLGRWIDFDND--YKTLYPSFMESVWWVFKELHEKGLVYR 173 (1070)
T ss_pred HHHHHHHHHHhhccceeccCC--cceecHHHHHHHHHHHHHHHhcCceec
Confidence 6777777788888 566542 3333 34445556789999999995
No 144
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=87.61 E-value=1.3 Score=34.96 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=26.6
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2377 6 TRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDI 47 (340)
Q Consensus 6 ~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~ 47 (340)
+.|+.++ |++|+||...+-. |.+.....++.+.+..+
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~ 38 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPP 38 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCc
Confidence 6789999 9999999987333 33334667777776654
No 145
>KOG0437|consensus
Probab=79.87 E-value=2.5 Score=44.61 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCCCCcCchhHHHHHHHHHHHH--HHcCCcEEEE---ecCCccccchHHHHHHHHHHHHHcCCCCC
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYA--RHFNGIFILR---IEDTDINRSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~a--r~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~l~~lGi~~d 70 (340)
|+-||.||+||+.+.--....+ .+.+|+-+|- +-.|+ --+....+.+.+.++.+|-.+|
T Consensus 53 PYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 53 PYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred cccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCC
Confidence 7789999999999876433222 2457776654 66777 3355566777777888898776
No 146
>KOG2623|consensus
Probab=78.45 E-value=18 Score=35.59 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=79.1
Q ss_pred cchhhHHHhhhh----cCCCcEEEeCCCCCCcHHHHHHHHHHh-CC-CCCceEEecceecCCCceecccCC-CCChHHHH
Q psy2377 184 PTYNFCAAIDDW----DMKITHVIRGDDHINNTPRQINILKAL-GV-TLPFYGHLPMVIDSNKVKISKRKE-ATDIMYYK 256 (340)
Q Consensus 184 ptY~la~vvDD~----~~githvIrG~D~~~~t~~q~~l~~aL-g~-~~p~~~H~pll~~~~g~KLSKR~g-~~~l~~l~ 256 (340)
+||++--+.|=+ ..|++.-|-|.|-++|.-.=..+.+.+ +. ..+--.-+||+.+.+|.|+-|+.| |++|+.
T Consensus 209 FtYQ~lQAYDfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp-- 286 (467)
T KOG2623|consen 209 FTYQLLQAYDFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDP-- 286 (467)
T ss_pred HHHHHHHHHhHHHHHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecC--
Confidence 678777766521 247887799999998876655544433 43 223446779999999999999998 567753
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCC
Q psy2377 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321 (340)
Q Consensus 257 ~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~ 321 (340)
.--+|=.+-.|+..+- + ..++.++.-|. .++.+++..+=..|++..+
T Consensus 287 -~~tspy~lYQfF~~~p----D---d~v~k~LklfT----------fl~l~eI~~I~~~H~k~P~ 333 (467)
T KOG2623|consen 287 -SKTSPYHLYQFFASLP----D---DDVEKFLKLFT----------FLPLEEIKQILEEHRKEPS 333 (467)
T ss_pred -ccCCcHHHHHHHHhCc----h---hHHHHHHHHHh----------cCCHHHHHHHHHHHhcChh
Confidence 2356778888887532 1 24556777665 3456677766677776554
No 147
>KOG1247|consensus
Probab=76.45 E-value=1.9 Score=42.50 Aligned_cols=95 Identities=22% Similarity=0.206 Sum_probs=65.6
Q ss_pred CceEEEeCCCCCCcCchhHHHHHH-HHHHHHHH--cCCcEEEEecCCc----------------cccchHHHHHHHHHHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTAL-FSWAYARH--FNGIFILRIEDTD----------------INRSTLSATQTIIDGM 62 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal-~~~~~ar~--~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l 62 (340)
+.+.|---|..+.-.|+||.-..+ .++++||. ..|.--++|=.|| |...-+.+.......+
T Consensus 15 nilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy 94 (567)
T KOG1247|consen 15 NILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVY 94 (567)
T ss_pred ceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHH
Confidence 345566679999999999998554 57999994 3455555664444 3233455666666779
Q ss_pred HHcCCCCCCCCcccc-ccHHHHHHHHHHHHHcCCc
Q psy2377 63 KWLGLNYDEGPFYQT-KRINRYFEIINYLLSNDYA 96 (340)
Q Consensus 63 ~~lGi~~d~~~~~qS-~~~~~y~~~~~~L~~~G~a 96 (340)
+|++|+.|+.-...+ ...++-+++..+|.++|+.
T Consensus 95 ~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~ 129 (567)
T KOG1247|consen 95 DWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYL 129 (567)
T ss_pred HhhcccccccCcccCcchhHHHHHHhhchhhcCCc
Confidence 999999997433333 3557888888899888753
No 148
>KOG0437|consensus
Probab=75.48 E-value=0.8 Score=48.16 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=47.6
Q ss_pred CCcEEEeCCCCCCcHH-----HHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 198 KITHVIRGDDHINNTP-----RQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 198 githvIrG~D~~~~t~-----~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
-|+.-|-|.|+++|.- -|.+|+..-.||.-..+.--|++ +++||||+.|+ -||++-.++ ++.++.|..|+-
T Consensus 663 PiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmL--NsEKMSKSTGNfmTL~qaieK-Fgad~tRlalAd 739 (1080)
T KOG0437|consen 663 PIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLML--NSEKMSKSTGNFMTLEQAIEK-FGADGTRLALAD 739 (1080)
T ss_pred ceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEe--cchhhccccCCeeeHHHHHHH-hCccceeeeeec
Confidence 3444456999987642 33444443344443332222344 48899999998 588877765 888888888887
Q ss_pred hCCC
Q psy2377 272 LGWS 275 (340)
Q Consensus 272 lG~~ 275 (340)
.|=+
T Consensus 740 aGD~ 743 (1080)
T KOG0437|consen 740 AGDG 743 (1080)
T ss_pred ccCC
Confidence 7744
No 149
>KOG0434|consensus
Probab=68.51 E-value=2.2 Score=44.68 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=29.8
Q ss_pred eEEecceecCCCceecccCCCCC-hHHHHHcCCCHHHHHHHHHH
Q psy2377 229 YGHLPMVIDSNKVKISKRKEATD-IMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 229 ~~H~pll~~~~g~KLSKR~g~~~-l~~l~~~G~~p~al~~~l~~ 271 (340)
..--.+++-.+|+|||||..+.. -.... +-|.++|||.||..
T Consensus 588 vIvnGlVLAeDG~KMSKrlkNYPdP~~ii-nkYGADalRlYLIn 630 (1070)
T KOG0434|consen 588 VIVNGLVLAEDGKKMSKRLKNYPDPSLII-NKYGADALRLYLIN 630 (1070)
T ss_pred eeEeeeEEecccHHHhhhhhcCCCHHHHH-Hhhcchheeeeeec
Confidence 34447888899999999998643 22233 34788888888763
No 150
>KOG0433|consensus
Probab=65.44 E-value=2.2 Score=44.98 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=33.3
Q ss_pred ceEEecceecCCCceecccCCCCChHHHHHcC------CCHHHHHHHHH
Q psy2377 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKG------FLPEAILNYLA 270 (340)
Q Consensus 228 ~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G------~~p~al~~~l~ 270 (340)
...-+...++.+|.||||+.|++.=.++.-+| |..+.||.+++
T Consensus 599 ~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA 647 (937)
T KOG0433|consen 599 KVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVA 647 (937)
T ss_pred heeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeee
Confidence 34455678899999999999986544445466 88899999988
No 151
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=52.13 E-value=37 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.8
Q ss_pred hHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 252 IMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 252 l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
|..|++.||+.+..+.+|..-++
T Consensus 6 v~~L~~mGf~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 6 VQQLMEMGFSREQAREALRACNG 28 (37)
T ss_dssp HHHHHHHTS-HHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC
Confidence 67889999999999999987664
No 152
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=43.29 E-value=22 Score=31.71 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=35.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y 83 (340)
+.|||-| +|+||+.. +.+.+.+ -...|+=|-..+..+ +. ..|++..+|...+
T Consensus 9 ~iGRFQP-----fH~GHl~~--I~~al~~--~devII~IGSA~~s~------------------t~-~NPFTa~ER~~MI 60 (196)
T PRK13793 9 FIGRFQP-----FHLAHMQT--IEIALQQ--SRYVILALGSAQMER------------------NI-KNPFLAIEREQMI 60 (196)
T ss_pred EEecCCC-----CcHHHHHH--HHHHHHh--CCEEEEEEccCCCCC------------------CC-CCCCCHHHHHHHH
Confidence 6899999 89999954 3344444 224444454433221 22 2377888887777
Q ss_pred HHHHHH
Q psy2377 84 FEIINY 89 (340)
Q Consensus 84 ~~~~~~ 89 (340)
...+..
T Consensus 61 ~~aL~e 66 (196)
T PRK13793 61 LSNFSL 66 (196)
T ss_pred HHhcch
Confidence 776644
No 153
>KOG3349|consensus
Probab=42.45 E-value=16 Score=31.26 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCcccccCCH
Q psy2377 84 FEIINYLLSNDYAYYCYSSV 103 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~ 103 (340)
.|.|++|.++|+.|.|.||.
T Consensus 117 ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 117 LELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHhcCcEEEeeccc
Confidence 57899999999999999885
No 154
>KOG1247|consensus
Probab=40.94 E-value=60 Score=32.44 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=32.9
Q ss_pred ecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHHH
Q psy2377 236 IDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCY 289 (340)
Q Consensus 236 ~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~-~~~~~~~~~~~~~ 289 (340)
++-+..|.||+.|. +-=.+..+-|++|+.-|+||+..- + +....+|.++++.
T Consensus 337 LnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~R--PEssDs~Fsw~df~~ 390 (567)
T KOG1247|consen 337 LNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIR--PESSDSAFSWDDFVL 390 (567)
T ss_pred hccccCcccccccccccccccccCCCCHHHHHHHHhhcc--CcccCCcCcHHHHHH
Confidence 35566799999984 222344557999998899988643 2 2233455555543
No 155
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=39.19 E-value=84 Score=19.34 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=19.9
Q ss_pred hHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 252 IMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 252 l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
|..|++.||+.+..+.+|..-++
T Consensus 5 v~~L~~mGf~~~~a~~aL~~~~~ 27 (37)
T smart00165 5 IDQLLEMGFSREEALKALRAANG 27 (37)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Confidence 67888999999999999988775
No 156
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=36.61 E-value=22 Score=31.08 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTAL 25 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal 25 (340)
+.|||-| +|.||+...-
T Consensus 8 ~~GRFqP-----~H~GHl~vi~ 24 (172)
T COG1056 8 YFGRFQP-----LHTGHLYVIK 24 (172)
T ss_pred EEeccCC-----ccHhHHHHHH
Confidence 7899999 9999997543
No 157
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=34.55 E-value=41 Score=34.65 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred eeecCCCCCCeEEEecCCCcchhhHHHhhhh----cCCCcEEE----eCCCCCCcHHH---HHHHHHHhCCCCCceEEec
Q psy2377 165 ITISNKELDDLVIVRADGIPTYNFCAAIDDW----DMKITHVI----RGDDHINNTPR---QINILKALGVTLPFYGHLP 233 (340)
Q Consensus 165 ~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~----~~githvI----rG~D~~~~t~~---q~~l~~aLg~~~p~~~H~p 233 (340)
+..++..+.|+|+.|.+-.|...-. |++ .....|+| -|--|.-.+-= ...+|++++...+.+.+ |
T Consensus 152 ~~~~n~~~rD~V~~Ri~~~~h~~~g---dk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~-P 227 (522)
T TIGR00440 152 MASPFPVMRDPVAYRIKFAPHHQTG---TKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPR-P 227 (522)
T ss_pred CCCCCceEeeeeEEEEecCCCCCCC---CCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCC-C
Confidence 3444667899999998743322111 111 12344444 35555322211 13678888876655543 5
Q ss_pred ceecCCCceecccCCC---CChHHHHHcCCC------HHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccc
Q psy2377 234 MVIDSNKVKISKRKEA---TDIMYYKKKGFL------PEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQF 304 (340)
Q Consensus 234 ll~~~~g~KLSKR~g~---~~l~~l~~~G~~------p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 304 (340)
..... ..|.-.... -.+..+.+.|+- --.....+...|+ .++.+.+... .-..++.....
T Consensus 228 ~~~~F--~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~--------~PeAi~nfl~-~lG~s~~~~~~ 296 (522)
T TIGR00440 228 AQYEF--SRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGY--------TPASIREFCN-RIGVTKQDNNI 296 (522)
T ss_pred ceEEE--EEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCC--------CHHHHHHHHH-HhCCCCCCCce
Confidence 33321 123321111 234455555431 0112334455564 4545555545 55667777778
Q ss_pred cHHHHHHHHHHHhhcCCHH
Q psy2377 305 NLKKLEWLNNFYIKSYDDK 323 (340)
Q Consensus 305 d~~kl~~~n~~~i~~~~~~ 323 (340)
++.+|..+|++.+......
T Consensus 297 e~~~l~~~~r~f~~~~~~r 315 (522)
T TIGR00440 297 EVVRLESCIREDLNENAPR 315 (522)
T ss_pred ehhhHHHHHHHhhhhcCcc
Confidence 9999999999999866544
No 158
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=33.43 E-value=60 Score=19.84 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.0
Q ss_pred hHHHHHcCCCHHHHHHHHHH
Q psy2377 252 IMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 252 l~~l~~~G~~p~al~~~l~~ 271 (340)
+.+-++.|++.+.++.||..
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 45567789999999999864
No 159
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=30.98 E-value=61 Score=33.70 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCCCccccccHHHHHHHHHHHHHcCCccc
Q psy2377 49 RSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 49 r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+.++...+.+.++|.+||+.+|. ....|.+.+...+++++|.++|.+|.
T Consensus 231 ~~~~~~l~~~~~~~~~l~V~fD~-~~~es~~~~~~~~v~~~L~~~g~~~e 279 (562)
T PRK12451 231 WFRHESLKEFSRIYELLGVEFTN-FQGEAFYNDLMEDFIGILEEHDLLEE 279 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCCcee-ecchHhhhhhHHHHHHHHHHCCCEEe
Confidence 34677778889999999999984 33444455667888999999998874
No 160
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.98 E-value=32 Score=31.76 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=33.7
Q ss_pred CceEEecceecCCCceecccCCCCChHHHHHcCC-CHHHHHHHHHHhCCC
Q psy2377 227 PFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGF-LPEAILNYLARLGWS 275 (340)
Q Consensus 227 p~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~-~p~al~~~l~~lG~~ 275 (340)
|.=.|+.+|+++++ +-.|++|.....+.++ |+ ....+..++..+|..
T Consensus 13 ~~P~HvaiImDGNr-RwAk~~g~~~~~GH~~-G~~~l~~iv~~c~~~gI~ 60 (243)
T PRK14829 13 KLPRHIAVVMDGNG-RWATQRGLKRTEGHKA-GEPVLFDVVAGAIEAGVP 60 (243)
T ss_pred CCCCeEEEecCCCH-HHHHHCCCChhHHHHH-HHHHHHHHHHHHHHcCCC
Confidence 45689999999776 6888888776666664 43 234566777778874
No 161
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=30.54 E-value=2e+02 Score=20.31 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCHHHHHHhHHHHHHhcC
Q psy2377 264 AILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 264 al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
.|..|...+|. |.+++.+.|. - ++.-....-+-..+..++.+++++-+..++++.|
T Consensus 7 ~Ie~~A~~~~~--------s~~ea~~~~~-~---------~~~~~~i~~~Yd~lHt~s~~yivedi~~~l~~~g 62 (62)
T PF12668_consen 7 CIEEFAKKLNI--------SGEEAYNYFK-R---------SGVIDYIIDCYDVLHTQSDEYIVEDIIEYLKNRG 62 (62)
T ss_pred HHHHHHHHHCc--------CHHHHHHHHH-H---------cCcHHHHHHcchHHHHCcHHHHHHHHHHHHHhcC
Confidence 44455555663 4556666665 2 1223356666778899999999999999999876
No 162
>KOG2145|consensus
Probab=29.03 E-value=57 Score=31.01 Aligned_cols=60 Identities=10% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccc-------cchHHHHHHHHHHHHHcCCCCCC
Q psy2377 12 PTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDIN-------RSTLSATQTIIDGMKWLGLNYDE 71 (340)
Q Consensus 12 PtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~-------r~~~~~~~~i~~~l~~lGi~~d~ 71 (340)
-++.||+||+--+++.-.+.-...-..|..+.|-..- .....+..+=..|+-++|.++..
T Consensus 95 SS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 95 SSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 3688999999999987666666677777666553311 12333444444556678888864
No 163
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.86 E-value=35 Score=32.49 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=31.4
Q ss_pred ceEEecceecCCCceecccCCCCChHHHHHcCCC-HHHHHHHHHHhCCC
Q psy2377 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFL-PEAILNYLARLGWS 275 (340)
Q Consensus 228 ~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~-p~al~~~l~~lG~~ 275 (340)
.=.|+.+|++++| +-.|+.|-....+.+. |+. ...+..++..+|+.
T Consensus 67 iP~HVAiIMDGNr-RwAk~~gl~~~~GH~~-G~~~l~~v~~~c~~lGI~ 113 (296)
T PRK14827 67 LPNHVAIVMDGNG-RWATQRGLARTEGHKM-GEAVVIDIACGAIELGIK 113 (296)
T ss_pred CCCeEEEeccCch-HHHHHCCCCHhHHHHH-HHHHHHHHHHHHHHcCCC
Confidence 4479999999877 6888888766666553 432 23556666778864
No 164
>COG4720 Predicted membrane protein [Function unknown]
Probab=27.61 E-value=49 Score=28.95 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHc
Q psy2377 10 PSPTGNLHIGGIRTALFSWAYARHF 34 (340)
Q Consensus 10 PsPtG~LHiG~~rtal~~~~~ar~~ 34 (340)
|-|+|++|+|.+--++++.++--..
T Consensus 31 p~~~~~i~L~da~i~las~lfGs~~ 55 (177)
T COG4720 31 PIPNGFLTLGDAGIALASFLFGSRA 55 (177)
T ss_pred CCCCCeeeHHHHHHHHHHHHHcchH
Confidence 4444999999999999998886543
No 165
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=27.45 E-value=1.6e+02 Score=18.16 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.7
Q ss_pred hHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 252 IMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 252 l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
|..|.+.||+.+..+.+|..-++
T Consensus 5 v~~L~~mGf~~~~~~~AL~~~~~ 27 (38)
T cd00194 5 LEQLLEMGFSREEARKALRATNN 27 (38)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Confidence 67788999999999999987775
No 166
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=26.62 E-value=97 Score=21.22 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHH
Q psy2377 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESF 109 (340)
Q Consensus 77 S~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~ 109 (340)
-+|+..|..+++.|.++|-.+. +..+|.+.
T Consensus 8 i~RL~~Y~r~L~~l~~~G~~~v---SS~~La~~ 37 (50)
T PF06971_consen 8 IRRLPLYLRYLEQLKEEGVERV---SSQELAEA 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEE----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeeE---CHHHHHHH
Confidence 3689999999999999998775 56777543
No 167
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=25.70 E-value=47 Score=28.32 Aligned_cols=18 Identities=44% Similarity=0.678 Sum_probs=14.1
Q ss_pred ceEEEeCCCCCCcCchhHHHHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTAL 25 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal 25 (340)
-+.|||.| +|.||+..+-
T Consensus 3 l~~G~F~P-----~H~GHl~li~ 20 (158)
T cd02167 3 IVFGKFAP-----LHTGHVYLIY 20 (158)
T ss_pred EEeeccCC-----CCHHHHHHHH
Confidence 35799998 8999997444
No 168
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=24.95 E-value=43 Score=32.19 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCCceEEecceecCCCceecccCCCCChHHHHHcCCC-HHHHHHHHHHhCCC
Q psy2377 215 QINILKALGVTLPFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFL-PEAILNYLARLGWS 275 (340)
Q Consensus 215 q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~-p~al~~~l~~lG~~ 275 (340)
+..+...|.. -|.-.|+.+|++++| +-+|++|-....+.+. |+. ...+..++..+|..
T Consensus 7 ~~~~~~~l~~-g~iP~HVAiIMDGNr-RwAk~~gl~~~~GH~~-G~~~l~~il~~c~~lGIk 65 (322)
T PTZ00349 7 ERFITSLLRD-FINIKHISIIMDGNR-RFAKEKGLHSAIGHFM-GSKALIQIIEICIKLKIK 65 (322)
T ss_pred HHHHHHHhhc-CCCCCcEEEEcCCCH-HHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence 3445555553 366689999999877 6888888666656553 432 23456677778864
No 169
>KOG0435|consensus
Probab=24.35 E-value=51 Score=34.96 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=25.7
Q ss_pred CceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 240 KVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 240 g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
-+||||++++ +...+...+ +.++.+|.|++..+
T Consensus 615 ~eKMSKSK~NGVdP~~~v~~-yG~D~tRl~ilf~a 648 (876)
T KOG0435|consen 615 YEKMSKSKHNGVDPADVVLE-YGVDTTRLYILFAA 648 (876)
T ss_pred HHHhhhcccCCCCHHHHHHH-hCchHHHHHHHhhC
Confidence 5799999876 566666654 77899999998754
No 170
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=24.13 E-value=54 Score=29.93 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=31.0
Q ss_pred EEecceecCCCceecccCCCCChHHHHHcCC-CHHHHHHHHHHhCCC
Q psy2377 230 GHLPMVIDSNKVKISKRKEATDIMYYKKKGF-LPEAILNYLARLGWS 275 (340)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~-~p~al~~~l~~lG~~ 275 (340)
.|+.+|++++| +-.|++|-....+.++ |+ ....+..++..+|..
T Consensus 1 ~HVAiImDGNr-RwAk~~gl~~~~GH~~-G~~~~~~v~~~c~~~GI~ 45 (226)
T TIGR00055 1 RHVAIIMDGNG-RWAKKKGKPRAYGHKA-GVKSLRRILRWCANLGVE 45 (226)
T ss_pred CcEEEEcCCCH-HHHHHCCCChhHhHHH-HHHHHHHHHHHHHHcCCC
Confidence 39999999877 5788888766666553 33 234677778888874
No 171
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=22.88 E-value=85 Score=32.61 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=41.5
Q ss_pred EEEEecCCccc------cchHHHHHHHHHHHHHcCCCCCCCCc-cccccHHHHHHHHHHHHHcCCccc
Q psy2377 38 FILRIEDTDIN------RSTLSATQTIIDGMKWLGLNYDEGPF-YQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 38 ~vlRieD~d~~------r~~~~~~~~i~~~l~~lGi~~d~~~~-~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
++..++.-|+. +.++...+.+.++|++||+.+|...+ ..+-+.....+++++|.++|.+|.
T Consensus 215 ~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~ 282 (566)
T TIGR00456 215 LFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVE 282 (566)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEE
Confidence 34456655542 45677888899999999999985211 111233456888899999998873
No 172
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=22.84 E-value=1.4e+02 Score=22.99 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhCCCCCC-c-cccCHHHHHHh
Q psy2377 259 GFLPEAILNYLARLGWSHGN-E-EIFSIKQFCYW 290 (340)
Q Consensus 259 G~~p~al~~~l~~lG~~~~~-~-~~~~~~~~~~~ 290 (340)
+.+|++|+.+|...+..... . +.+|.++|+++
T Consensus 6 ~A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~ 39 (87)
T PF13331_consen 6 HASPEAIREALENARTEDEEPKESEITWEDLIEL 39 (87)
T ss_pred CCCHHHHHHHHHHhCccccCCccCcCCHHHHHHC
Confidence 57899999999998764432 2 24889888873
No 173
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=22.53 E-value=1.7e+02 Score=26.85 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=38.4
Q ss_pred EEEEecCCccccchHHHHHHHHHHHHHcCCCCCC--CCccccc---------cHHHHHHHHHHHHHcCC
Q psy2377 38 FILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE--GPFYQTK---------RINRYFEIINYLLSNDY 95 (340)
Q Consensus 38 ~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~--~~~~qS~---------~~~~y~~~~~~L~~~G~ 95 (340)
-++||||+.|. ...+....+.+.|...|+.+-- .|.+... ....+.++++.+.++|+
T Consensus 2 ~lirleDVsP~-~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg 69 (243)
T PF10096_consen 2 ALIRLEDVSPF-SDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGG 69 (243)
T ss_pred cEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCC
Confidence 47999999984 4455667888889999986421 1222211 13577788888888884
No 174
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.22 E-value=74 Score=29.48 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=31.4
Q ss_pred CceEEecceecCCCceecccCCCCChHHHHHcCC-CHHHHHHHHHHhCCC
Q psy2377 227 PFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGF-LPEAILNYLARLGWS 275 (340)
Q Consensus 227 p~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~-~p~al~~~l~~lG~~ 275 (340)
|.=.|+.+|+++++ +-.|++|.......+. |+ ....+..++..+|..
T Consensus 13 ~~P~HVAiImDGNr-RwAk~~g~~~~~GH~~-G~~~l~~i~~~c~~lgI~ 60 (249)
T PRK14834 13 SVPRHVAIIMDGNG-RWAKARGLPRAAGHRA-GVEALRRVVRAAGELGIG 60 (249)
T ss_pred CCCCeEEEEecCch-HHHHHCCCchhhhHHH-HHHHHHHHHHHHHHcCCC
Confidence 34589999999877 5777777554555443 33 234677778888874
No 175
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.54 E-value=64 Score=29.78 Aligned_cols=47 Identities=11% Similarity=0.221 Sum_probs=33.3
Q ss_pred CceEEecceecCCCceecccCCCCChHHHHHcCC-CHHHHHHHHHHhCCC
Q psy2377 227 PFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGF-LPEAILNYLARLGWS 275 (340)
Q Consensus 227 p~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~-~p~al~~~l~~lG~~ 275 (340)
|.=.|+.+|+++++ +-+|++|.....+.+. |+ ....+..++..+|..
T Consensus 7 ~~P~HVaiImDGNr-RwAk~~gl~~~~GH~~-G~~~l~~i~~~c~~lgI~ 54 (241)
T PRK14842 7 TIPAHIAVIMDGNG-RWAESQGKKRSEGHRE-GANAIDRLMDASLEYGLK 54 (241)
T ss_pred CCCCeEEEEcCCCH-HHHHHCCCChhHhHHH-HHHHHHHHHHHHHHcCCC
Confidence 45589999999776 6788888766666664 33 234677788888874
No 176
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.38 E-value=71 Score=29.61 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=31.9
Q ss_pred CceEEecceecCCCceecccCCCCChHHHHHcCC-CHHHHHHHHHHhCCC
Q psy2377 227 PFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGF-LPEAILNYLARLGWS 275 (340)
Q Consensus 227 p~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~-~p~al~~~l~~lG~~ 275 (340)
|.=.|+.+|+++++ +-+|++|.....+.+. |+ ....+..++..+|..
T Consensus 19 ~~P~HVaiImDGNr-RwA~~~gl~~~~GH~~-G~~~l~~i~~~c~~~GI~ 66 (249)
T PRK14831 19 RLPKHVAVIMDGNG-RWAKRRGLPRIMGHRR-GVDALKDLLRCCKDWGIG 66 (249)
T ss_pred CCCCeEEEecCCcH-HHHHHCCCchhhhHHH-HHHHHHHHHHHHHHcCCC
Confidence 34469999999776 6788888655555553 33 234566777788874
No 177
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=20.35 E-value=67 Score=28.10 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHH
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALF 26 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~ 26 (340)
+.|||-| +|+||+..+..
T Consensus 4 ~~GrF~P-----~H~GHl~~i~~ 21 (181)
T cd02168 4 YIGRFQP-----FHNGHLAVVLI 21 (181)
T ss_pred EeeccCC-----CCHHHHHHHHH
Confidence 5799998 79999965544
Done!