Query psy2377
Match_columns 340
No_of_seqs 222 out of 1674
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:25:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g6z_A Glutamate-tRNA ligase; 100.0 6E-102 2E-106 768.7 35.9 335 2-338 24-359 (490)
2 4gri_A Glutamate--tRNA ligase; 100.0 4E-99 1E-103 759.0 34.3 336 1-338 22-369 (512)
3 2ja2_A Glutamyl-tRNA synthetas 100.0 6.8E-98 2E-102 743.1 31.7 332 3-338 6-353 (498)
4 2cfo_A Glutamyl-tRNA synthetas 100.0 7.1E-97 2E-101 736.8 33.9 333 3-337 1-343 (492)
5 1j09_A Glutamyl-tRNA synthetas 100.0 4.9E-96 2E-100 726.8 31.7 328 3-338 1-340 (468)
6 3afh_A Glutamyl-tRNA synthetas 100.0 9.8E-94 3.3E-98 712.9 25.7 317 3-337 25-349 (488)
7 2o5r_A Glutamyl-tRNA synthetas 100.0 5.6E-91 1.9E-95 693.7 31.0 332 4-338 14-358 (481)
8 3al0_C Glutamyl-tRNA(Gln) amid 100.0 6.9E-90 2.4E-94 699.2 19.9 317 3-337 129-453 (592)
9 1nzj_A Hypothetical protein YA 100.0 1.4E-81 4.7E-86 591.3 23.0 279 2-302 4-288 (298)
10 1qtq_A GLNRS, protein (glutami 100.0 2.2E-75 7.5E-80 583.1 14.5 306 2-329 25-378 (553)
11 3aii_A Glutamyl-tRNA synthetas 100.0 1.8E-71 6.2E-76 554.8 21.9 273 2-322 95-402 (553)
12 2hz7_A Glutaminyl-tRNA synthet 100.0 4.3E-72 1.5E-76 580.4 13.4 288 2-314 65-396 (851)
13 1irx_A Lysyl-tRNA synthetase; 100.0 6E-38 2E-42 316.7 4.2 296 4-332 22-371 (523)
14 1iq0_A Arginyl-tRNA synthetase 99.9 1E-26 3.5E-31 237.7 16.9 268 9-336 111-487 (592)
15 3tqo_A Cysteinyl-tRNA syntheta 99.9 5.4E-26 1.8E-30 224.5 17.6 226 9-275 32-302 (462)
16 3fnr_A Arginyl-tRNA synthetase 99.9 3.8E-26 1.3E-30 226.4 14.4 249 3-271 31-314 (464)
17 1li5_A Cysrs, cysteinyl-tRNA s 99.9 9.7E-26 3.3E-30 224.0 17.3 236 9-288 29-310 (461)
18 2csx_A Methionyl-tRNA syntheta 99.9 8.3E-24 2.8E-28 212.2 15.9 266 4-289 8-341 (497)
19 3sp1_A Cysteinyl-tRNA syntheta 99.9 4.4E-23 1.5E-27 204.9 18.7 225 9-275 49-333 (501)
20 2d5b_A Methionyl-tRNA syntheta 99.9 9.1E-23 3.1E-27 204.6 19.1 261 4-288 6-342 (500)
21 1f7u_A Arginyl-tRNA synthetase 99.9 5E-22 1.7E-26 202.8 17.2 254 9-336 151-503 (607)
22 3c8z_A Cysteinyl-tRNA syntheta 99.9 5.3E-21 1.8E-25 187.7 19.2 222 9-271 46-321 (414)
23 2dlc_X Tyrosyl-tRNA synthetase 99.9 5.4E-21 1.8E-25 186.1 15.5 195 4-271 42-252 (394)
24 2zue_A Arginyl-tRNA synthetase 99.8 2.1E-20 7.3E-25 191.9 14.6 249 9-314 127-501 (629)
25 4dlp_A Aminoacyl-tRNA syntheta 99.8 4E-20 1.4E-24 187.1 9.6 275 4-289 28-367 (536)
26 3h99_A Methionyl-tRNA syntheta 99.8 9.1E-18 3.1E-22 170.6 21.1 275 4-289 21-392 (560)
27 2cyb_A Tyrosyl-tRNA synthetase 99.8 2.9E-18 9.9E-23 162.9 15.8 196 4-272 35-239 (323)
28 1n3l_A Tyrosyl-tRNA synthetase 99.8 2.4E-17 8.2E-22 159.2 18.0 195 4-271 38-247 (372)
29 3kfl_A Methionyl-tRNA syntheta 99.7 2.3E-18 7.8E-23 175.1 8.2 266 4-289 29-385 (564)
30 2x1l_A Methionyl-tRNA syntheta 99.7 1.1E-17 3.8E-22 168.7 12.0 245 5-273 16-341 (524)
31 1rqg_A Methionyl-tRNA syntheta 99.5 2.7E-13 9.2E-18 141.4 20.1 97 1-98 1-119 (722)
32 3u1f_A Methionyl-tRNA syntheta 99.5 1.5E-13 5.1E-18 138.9 14.7 94 4-98 12-125 (542)
33 2g36_A Tryptophanyl-tRNA synth 99.5 4E-12 1.4E-16 121.2 20.1 234 5-318 14-273 (340)
34 2cya_A Tyrosyl-tRNA synthetase 99.4 5.1E-12 1.7E-16 121.6 14.3 197 4-271 38-263 (364)
35 2el7_A Tryptophanyl-tRNA synth 99.3 6.2E-11 2.1E-15 112.9 19.0 189 12-271 10-219 (337)
36 1yi8_B Tryptophanyl-tRNA synth 99.3 2.8E-11 9.5E-16 115.8 14.6 198 4-271 25-239 (351)
37 2zp1_A Tyrosyl-tRNA synthetase 99.3 3.1E-10 1.1E-14 107.1 18.9 189 4-271 31-228 (314)
38 2yy5_A Tryptophanyl-tRNA synth 99.3 1.1E-11 3.8E-16 118.4 9.1 195 11-271 12-229 (348)
39 1i6k_A TRPRS, tryptophanyl-tRN 99.2 1.4E-10 4.9E-15 109.9 16.1 188 12-271 10-219 (328)
40 3tzl_A Tryptophanyl-tRNA synth 99.0 5.4E-09 1.8E-13 98.8 15.8 188 11-271 11-216 (322)
41 3jxe_A Tryptophanyl-tRNA synth 98.8 2.5E-07 8.4E-12 89.5 17.2 182 12-271 82-278 (392)
42 2cyc_A Tyrosyl-tRNA synthetase 98.7 2.4E-07 8.3E-12 89.2 15.5 192 11-271 41-276 (375)
43 3hzr_A Tryptophanyl-tRNA synth 98.7 4.3E-07 1.5E-11 87.6 15.7 185 11-272 90-295 (386)
44 2ip1_A Tryptophanyl-tRNA synth 98.6 1.4E-06 4.7E-11 85.4 18.9 184 11-271 110-320 (432)
45 2jan_A Tyrosyl-tRNA synthetase 98.6 2.8E-07 9.5E-12 90.2 13.9 117 182-318 167-289 (432)
46 4arc_A Leucine--tRNA ligase; l 98.6 5.2E-08 1.8E-12 103.2 9.5 93 5-98 57-171 (880)
47 2v0c_A Aminoacyl-tRNA syntheta 98.6 1E-07 3.6E-12 101.2 9.8 94 5-98 37-151 (878)
48 1h3f_A Tyrosyl-tRNA synthetase 98.6 8E-07 2.7E-11 87.0 14.7 84 182-271 171-256 (432)
49 1wkb_A Leucyl-tRNA synthetase; 98.5 2E-07 7E-12 98.4 10.0 94 4-98 37-178 (810)
50 3hv0_A Tryptophanyl-tRNA synth 98.5 5.3E-06 1.8E-10 80.2 18.1 185 11-272 82-292 (393)
51 2j5b_A Tyrosyl-tRNA synthetase 98.5 4.6E-07 1.6E-11 86.5 10.5 193 11-271 48-257 (348)
52 3prh_A Tryptophanyl-tRNA synth 98.5 9E-08 3.1E-12 92.3 5.6 189 11-271 43-253 (388)
53 1jil_A Tyrrs, tyrosyl-tRNA syn 98.5 2.6E-06 8.9E-11 83.2 14.8 116 182-317 166-287 (420)
54 1r6t_A Tryptophanyl-tRNA synth 98.4 3.6E-06 1.2E-10 83.4 15.3 68 198-271 303-374 (477)
55 3a04_A Tryptophanyl-tRNA synth 98.4 1.8E-06 6E-11 83.1 12.2 186 11-271 78-281 (372)
56 2ts1_A Tyrosyl-tRNA synthetase 98.4 2.2E-06 7.4E-11 83.6 12.5 117 182-318 165-287 (419)
57 2yxn_A Tyrosyl-tRNA synthetase 98.4 4.3E-07 1.5E-11 85.8 7.2 116 182-317 171-291 (322)
58 3n9i_A Tryptophanyl-tRNA synth 98.4 4.3E-07 1.5E-11 86.4 7.1 191 11-271 23-234 (346)
59 3tze_A Tryptophanyl-tRNA synth 98.4 7E-06 2.4E-10 79.6 15.6 68 198-271 243-314 (406)
60 3vgj_A Tyrosyl-tRNA synthetase 98.4 3.1E-06 1.1E-10 81.4 12.7 84 182-271 184-272 (373)
61 3sz3_A Tryptophanyl-tRNA synth 98.4 1.2E-07 4.2E-12 90.1 2.7 191 11-271 14-228 (341)
62 2pid_A Tyrosyl-tRNA synthetase 98.3 3.8E-06 1.3E-10 80.3 12.5 117 182-318 190-311 (356)
63 3foc_A Tryptophanyl-tRNA synth 98.3 1.5E-05 5.1E-10 78.2 16.4 66 201-272 290-359 (451)
64 1gax_A Valrs, valyl-tRNA synth 98.3 1.4E-06 4.7E-11 92.4 9.3 94 5-98 38-168 (862)
65 1ffy_A Isoleucyl-tRNA syntheta 98.3 7.6E-07 2.6E-11 95.0 7.4 92 6-98 53-178 (917)
66 3i05_A Tryptophanyl-tRNA synth 98.3 6.7E-07 2.3E-11 86.6 6.3 66 199-270 225-293 (395)
67 1ile_A Ilers, isoleucyl-tRNA s 98.3 2E-07 6.7E-12 98.6 2.8 90 8-98 45-173 (821)
68 1r6u_A Tryptophanyl-tRNA synth 98.2 2.2E-05 7.4E-10 76.9 15.3 68 198-271 256-327 (437)
69 1wz2_A Leucyl-tRNA synthetase; 98.2 1.8E-06 6.2E-11 92.7 6.8 93 5-98 38-178 (967)
70 1y42_X Tyrosyl-tRNA synthetase 98.1 1.5E-05 5E-10 77.1 11.9 117 182-318 212-350 (392)
71 3p0j_A Tyrosyl-tRNA synthetase 98.1 0.00011 3.7E-09 75.9 17.9 84 182-271 167-255 (690)
72 1ile_A Ilers, isoleucyl-tRNA s 97.1 0.0011 3.8E-08 69.9 9.0 76 197-273 543-622 (821)
73 1ffy_A Isoleucyl-tRNA syntheta 96.9 0.002 7E-08 68.7 9.2 74 197-271 547-624 (917)
74 1gax_A Valrs, valyl-tRNA synth 96.5 0.0093 3.2E-07 63.1 10.0 76 197-273 480-559 (862)
75 1wkb_A Leucyl-tRNA synthetase; 96.3 0.0068 2.3E-07 63.8 7.6 75 197-273 602-681 (810)
76 1wz2_A Leucyl-tRNA synthetase; 96.2 0.0093 3.2E-07 64.0 8.4 75 197-273 602-681 (967)
77 4arc_A Leucine--tRNA ligase; l 95.7 0.01 3.5E-07 62.8 5.8 78 195-273 540-670 (880)
78 2v0c_A Aminoacyl-tRNA syntheta 94.9 0.046 1.6E-06 58.0 7.7 32 241-273 636-668 (878)
79 3p0j_A Tyrosyl-tRNA synthetase 93.2 0.25 8.5E-06 50.9 8.8 72 6-78 385-467 (690)
80 2lnd_A De novo designed protei 41.0 16 0.00054 26.7 2.4 22 316-337 82-103 (112)
81 1z96_A DNA-damage, UBA-domain 35.7 70 0.0024 19.1 4.6 24 251-274 7-30 (40)
82 3fnr_A Arginyl-tRNA synthetase 35.5 32 0.0011 33.4 4.4 47 51-98 144-190 (464)
83 2crn_A Ubash3A protein; compac 26.6 1.5E+02 0.005 20.3 5.4 35 249-290 10-44 (64)
84 2g3q_A Protein YBL047C; endocy 26.5 1E+02 0.0035 18.9 4.3 23 252-274 8-30 (43)
85 2jy5_A Ubiquilin-1; UBA, alter 23.3 1.4E+02 0.0047 19.4 4.6 24 251-274 15-39 (52)
86 1i27_A Transcription factor II 23.1 2E+02 0.007 20.3 6.1 27 258-292 8-34 (73)
87 2dak_A Ubiquitin carboxyl-term 21.9 96 0.0033 21.0 3.7 24 251-274 12-35 (63)
88 1nha_A TFIIF-alpha, transcript 20.3 1.6E+02 0.0053 21.4 4.6 27 258-292 17-43 (82)
89 2knz_A Ubiquilin-4; cytoplasm, 20.2 1.5E+02 0.0053 19.2 4.3 24 251-274 14-38 (53)
No 1
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=5.6e-102 Score=768.70 Aligned_cols=335 Identities=55% Similarity=1.036 Sum_probs=305.0
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|||||||||||+|||||+||||+||++||.++|+||+||||||++|+.++++++|+++|+||||+||+++++||+|++
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~ 103 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMD 103 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHH
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-CCCCCCceEEEeCCCCCceeEEec
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-IPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~-~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
.|++++++|+++|+||+||||+++|++.|+.+.+.|.++.|+|+||++ +.++.. ...|.++++||++|.++.+.|+|.
T Consensus 104 ~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~-~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~ 182 (490)
T 4g6z_A 104 RYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPE-PGKVLPEPPAGVAPVLRFRNPLTGTVAWDDA 182 (490)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCC-TTCCCCCCCTTCCCEEEECCCCSSEEEEEET
T ss_pred HHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccC-ChhhhhhhhcCCCceEEEecCCCCcEEEEEe
Confidence 999999999999999999999999999888777677788999999999 865432 245788999999997789999999
Q ss_pred cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC
Q psy2377 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 161 i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g 240 (340)
++|++.+++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|+|+||+++.+|
T Consensus 183 i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g 262 (490)
T 4g6z_A 183 VKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG 262 (490)
T ss_dssp TTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS
T ss_pred eeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhhcC
Q psy2377 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSY 320 (340)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~ 320 (340)
+|||||+|+++|.+|+++|++|++|+|||+.|||++++.|++|++||+++|+ ++++++++++||++||.|+|++||+.+
T Consensus 263 ~KLSKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~F~-~~~~~~~~~~fd~~KL~~~N~~~i~~~ 341 (490)
T 4g6z_A 263 EKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEWFD-LEHLGKSPAQYDHNKLNWLNNHYIKEA 341 (490)
T ss_dssp SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHHCC-GGGBCSSCEECCHHHHHHHHHHHHHHS
T ss_pred CcccCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhhCC-HhhCCCCCCccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998889999999999999 999999999999999999999999999
Q ss_pred CHHHHHHhHHHHHHhcCC
Q psy2377 321 DDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ 338 (340)
+++++++++.|||++.|+
T Consensus 342 ~~~~l~~~~~~~l~~~~~ 359 (490)
T 4g6z_A 342 DDARLAGLAKPFFAALGI 359 (490)
T ss_dssp CHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 999999999999998875
No 2
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=4e-99 Score=759.00 Aligned_cols=336 Identities=41% Similarity=0.761 Sum_probs=317.5
Q ss_pred CCceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCC--------
Q psy2377 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG-------- 72 (340)
Q Consensus 1 m~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~-------- 72 (340)
|+.|||||||||||+|||||+|||++||++||++||+|+|||||||++|++++++++|+++|+||||+||++
T Consensus 22 ~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~ 101 (512)
T 4gri_A 22 MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYA 101 (512)
T ss_dssp --CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCC
Confidence 456999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCC
Q psy2377 73 PFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNP 150 (340)
Q Consensus 73 ~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~ 150 (340)
||+||+|++.|++++++|+++|+||+|+||++++++.++.+...+.++.|++.|+++ +.++.. ...+.++++|++.|
T Consensus 102 py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~R~k~~ 180 (512)
T 4gri_A 102 PYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNL-SNEEVENALIKKIKPVVRFKIP 180 (512)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTC-CHHHHHHHHHTTCCCEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhccc-chhhhhhhhhhhccceeeeccc
Confidence 579999999999999999999999999999999999998888888889999999998 765432 14567889999999
Q ss_pred CCCceeEEeccceeeeecCCC-CCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCce
Q psy2377 151 LYGNITWNDLIKGKITISNKE-LDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFY 229 (340)
Q Consensus 151 ~~~~~~~~D~i~G~~~~~~~~-~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~ 229 (340)
.++.+.|.|.++|.+.+.+.. .+||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|
T Consensus 181 ~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y 260 (512)
T 4gri_A 181 LEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIY 260 (512)
T ss_dssp SSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred ccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeE
Confidence 778899999999999987654 4799999999999999999999999999999999999999999999999999999999
Q ss_pred EEecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhhcccCcCCCCCccccHHH
Q psy2377 230 GHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNLKK 308 (340)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~d~~k 308 (340)
+|+|++++.+|+|||||+|+.+|++|++.||.|+||.|||+.|||++++ .|++|++||+++|+ ++++++++++||++|
T Consensus 261 ~H~pli~~~~g~kLSKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~Fd-l~~v~ks~a~fD~~K 339 (512)
T 4gri_A 261 CHLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFS-IEKINKSPAIFDYHK 339 (512)
T ss_dssp EEECCCBCTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHHCC-GGGBCSSCCBCCHHH
T ss_pred EecchhccccccccCcccccccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHHHH-hcCCCCCCccccHHH
Confidence 9999999999999999999999999999999999999999999999865 68999999999999 999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHhHHHHHHhcCC
Q psy2377 309 LEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 309 l~~~n~~~i~~~~~~~~~~~~~~~~~~~~~ 338 (340)
|.|+|++||+.++.+++++++.||+++.|+
T Consensus 340 L~~~N~~~i~~~~~~~l~~~~~~~l~~~~~ 369 (512)
T 4gri_A 340 LDFFNSYYIREKKDEDLFNLLLPFFQKKGY 369 (512)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998875
No 3
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=6.8e-98 Score=743.07 Aligned_cols=332 Identities=37% Similarity=0.681 Sum_probs=316.3
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCC--------CCc
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE--------GPF 74 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~--------~~~ 74 (340)
+|||||||||||+|||||+||||+||++||++||+|++||||||++|++++++++|+++|+||||+||+ +||
T Consensus 6 ~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~ 85 (498)
T 2ja2_A 6 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPY 85 (498)
T ss_dssp CCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred CeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCe
Confidence 499999999999999999999999999999999999999999999999999999999999999999998 589
Q ss_pred cccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCC
Q psy2377 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLY 152 (340)
Q Consensus 75 ~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~ 152 (340)
+||+|++.|++++++|+++|+||+||||+++|++.| .+.+.|.++.|+|+||++ +.+|.. ...|.++++|||+| +
T Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r-~~~~~~~~~~Y~~~cr~l-~~~e~~~~~~~g~~~~iR~k~~-~ 162 (498)
T 2ja2_A 86 RQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH-VAAGRNPKLGYDNFDRHL-TDAQRAAYLAEGRQPVVRLRMP-D 162 (498)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHH-HHTTCCTTSCCCCGGGGC-CHHHHHHHHHTTCCCEEEECCC-S
T ss_pred eeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHH-HHHhcCCCCCCCCccccC-CHHHHHhhhccCCCceEEEECC-C
Confidence 999999999999999999999999999999999988 666677778999999999 876532 13577889999999 6
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHh-----CCCCC
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL-----GVTLP 227 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aL-----g~~~p 227 (340)
+.+.|.|.++|.+.+++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++++++| |+++|
T Consensus 163 ~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P 242 (498)
T 2ja2_A 163 DDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIP 242 (498)
T ss_dssp SCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCC
T ss_pred CceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCC
Confidence 7899999999999999889999999999999999999999999999999999999999999999999999 99999
Q ss_pred ceEEecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhhcccCcCCCCCccccH
Q psy2377 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNL 306 (340)
Q Consensus 228 ~~~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~d~ 306 (340)
.|+|+|+++|.+|+|||||+|+.+|++|+++|++|++|++||+.|||+++. .++++++|++++|+ ++++++++++||+
T Consensus 243 ~~~h~plil~~~g~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli~~f~-~~~~~~~~a~fd~ 321 (498)
T 2ja2_A 243 KFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFD-VADVNSSPARFDQ 321 (498)
T ss_dssp EEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHHHHCC-GGGCCCSCEECCH
T ss_pred eEEEeeeeECCCCCcccccCCcccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHhhCC-hhhcCccccccCH
Confidence 999999999999999999999999999999999999999999999999754 68999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHhHHHHHHhcCC
Q psy2377 307 KKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 307 ~kl~~~n~~~i~~~~~~~~~~~~~~~~~~~~~ 338 (340)
+||.|+|++||+.++++++++++.|+|++.|+
T Consensus 322 ~kL~~~N~~~i~~~~~~~l~~~l~~~l~~~~~ 353 (498)
T 2ja2_A 322 KKADALNAEHIRMLDVGDFTVRLRDHLDTHGH 353 (498)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998774
No 4
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=7.1e-97 Score=736.80 Aligned_cols=333 Identities=43% Similarity=0.790 Sum_probs=317.6
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHHH
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~ 82 (340)
+|||||||||||+|||||+||||+||++||.++|+||+||||||++|++++++++|+++|+||||+||+++++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEEec
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
|++++++|+++|+||+||||+++|++.|+.+.+.|.++.|+|+||++ +.+|.. ...|.++++|+++|.++.+.|.|.
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~l-s~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHL-TPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL 159 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTC-CHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccC-CHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence 99999999999999999999999999998887778788999999999 876421 134678899999987678999999
Q ss_pred cceeeeecCCCC-CCeEEEecC-----CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecc
Q psy2377 161 IKGKITISNKEL-DDLVIVRAD-----GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (340)
Q Consensus 161 i~G~~~~~~~~~-~DfVl~R~d-----G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pl 234 (340)
++|.+.+++.++ +||||+|+| |+|||||||||||+.|||||||||+||++|||+|++|+++||+++|.|+|+|+
T Consensus 160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~pl 239 (492)
T 2cfo_A 160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPL 239 (492)
T ss_dssp TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeee
Confidence 999999998888 999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCC-C-CccccCHHHHHHhhcccCcCCCCCccccHHHHHHH
Q psy2377 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH-G-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWL 312 (340)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~-~-~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~ 312 (340)
+++.+|+|||||+|+.+|++|+++|++|++|++||+.|||++ + ..+++++++++++|+ ++++++++++||++||.|+
T Consensus 240 il~~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~f~-~~~i~~~~~~~d~~kl~~~ 318 (492)
T 2cfo_A 240 ILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFS-FERINKAGARFDWDKLNWL 318 (492)
T ss_dssp EECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCC-STTBCSSCEECCHHHHHHH
T ss_pred EECCCCCEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhhcC-hhhcCccccccCHHHHHHH
Confidence 999999999999999999999999999999999999999986 3 368899999999999 9999999999999999999
Q ss_pred HHHHhhcCCHHHHHHhHHHHHHhcC
Q psy2377 313 NNFYIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 313 n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
|++||+.++++++++++.|||.+.|
T Consensus 319 N~~~i~~~~~~~l~~~~~~~l~~~g 343 (492)
T 2cfo_A 319 NRQYIQQLEPEEFLAELIPLWQGAG 343 (492)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999877
No 5
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=4.9e-96 Score=726.76 Aligned_cols=328 Identities=37% Similarity=0.653 Sum_probs=310.9
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCC--------c
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGP--------F 74 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~--------~ 74 (340)
+|||||||||||+|||||+|||++||++||++||+|++||||||++|++++++++|+++|+|||++||+++ +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 38999999999999999999999999999999999999999999999999999999999999999999865 9
Q ss_pred cccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCC
Q psy2377 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLY 152 (340)
Q Consensus 75 ~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~--~~~~~~~~~Rl~~~~~ 152 (340)
+||+|++.|++++++|+++|+||+|+||+++|++.|+.+. .|+|+||++ +.+|.. ...|.++++|||+|.+
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~------~y~~~cr~l-~~~e~~~~~~~g~~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG------GYDGRARNI-PPEEAEERARRGEPHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHS------SCCCGGGGS-CHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcC------CCCCcccCC-CHHHHHHHHhcCCCceEEEecCCC
Confidence 9999999999999999999999999999999998876531 799999999 876522 1346788999999977
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEe
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHL 232 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~ 232 (340)
+.+.|.|.++|++.+++.+++||||+|+||+|||||||||||++|||||||||+||++|||+|.+++++||+++|.|+|+
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~ 233 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHM 233 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred CceEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEe
Confidence 88999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhhcccCcCCCCCccccHHHHHH
Q psy2377 233 PMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEW 311 (340)
Q Consensus 233 pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~ 311 (340)
|+++|.+|+|||||+|+.+|++++++|++|++|+|||+.|||+++. .++++++|++++|+ ++++++++++||++||.|
T Consensus 234 ~li~~~~g~klSKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~f~-~~~~~~~~~~~d~~kl~~ 312 (468)
T 1j09_A 234 PLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFT-WERVSLGGPVFDLEKLRW 312 (468)
T ss_dssp CCCBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCC-GGGCCCSCCBCCHHHHHH
T ss_pred eeeeCCCCCccccccchhhHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhhCC-hhhcCccccccChHHhhh
Confidence 9999999999999999999999999999999999999999999754 48899999999999 999999999999999999
Q ss_pred HHHHHhhc-CCHHHHHHhHHHHHHhcCC
Q psy2377 312 LNNFYIKS-YDDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 312 ~n~~~i~~-~~~~~~~~~~~~~~~~~~~ 338 (340)
+|++||+. ++.+++.+++.||+.+.|+
T Consensus 313 ~N~~~i~~~~~~~~l~~~~~~~~~~~~~ 340 (468)
T 1j09_A 313 MNGKYIREVLSLEEVAERVKPFLREAGL 340 (468)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred hcHHHHHhcCCHHHHHHHHHHHHHHcCC
Confidence 99999999 9999999999999998874
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=9.8e-94 Score=712.95 Aligned_cols=317 Identities=39% Similarity=0.704 Sum_probs=301.2
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCC--------Cc
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------PF 74 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~--------~~ 74 (340)
+|||||||||||+|||||+||||+||++||+++|+|++||||||++|++++++++|+++|+||||+||++ |+
T Consensus 25 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~ 104 (488)
T 3afh_A 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPY 104 (488)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCe
Confidence 5899999999999999999999999999999999999999999999999999999999999999999985 59
Q ss_pred cccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q psy2377 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGN 154 (340)
Q Consensus 75 ~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~ 154 (340)
+||+|++.|++++++|+++|+||+|+||+++|++. .++.|+|+|... ..|.++++||++| ++.
T Consensus 105 ~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~--------~~~~Y~~~~~~~--------~~G~~~~iR~k~~-~~~ 167 (488)
T 3afh_A 105 RQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPHEYK--------EKGHPVTIKFKVL-PGK 167 (488)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSE--------EEEESSCCHHHH--------HTTCCEEEEECCC-SSE
T ss_pred eeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhh--------cCCCCCchhhHH--------hcCCCceEEEECC-CCc
Confidence 99999999999999999999999999999999653 235899986432 2466789999999 688
Q ss_pred eeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecc
Q psy2377 155 ITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (340)
Q Consensus 155 ~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pl 234 (340)
+.|.|.++|.+.+++.+++||||+|+||+|||||||||||++|||||||||+||++|||+|++++++||+++|.|+|+|+
T Consensus 168 ~~~~D~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pl 247 (488)
T 3afh_A 168 TSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 247 (488)
T ss_dssp EEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC
T ss_pred eeEEeccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEee
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHH
Q psy2377 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNN 314 (340)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~ 314 (340)
+++.+|+|||||+|+.+|++|+++|++|++|+|||+.|||+++..++++++|++++|+ ++++++++++||++||.|+|+
T Consensus 248 i~~~~g~KLSKR~g~~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~i~~f~-~~~i~~~~~~fd~~kl~~~N~ 326 (488)
T 3afh_A 248 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFD-PKDISNKGVIFDYQKLEWVNG 326 (488)
T ss_dssp EECTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHHGGGCC-GGGSCSSCEECCHHHHHHHHH
T ss_pred eeCCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCC-hhhcCccccccChHHhhhccH
Confidence 9999999999999999999999999999999999999999975458999999999999 999999999999999999999
Q ss_pred HHhhcCCHHHHHHhHHHHHHhcC
Q psy2377 315 FYIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
+||+.++++++++++.|++++.|
T Consensus 327 ~~i~~~~~~~l~~~l~~~l~~~g 349 (488)
T 3afh_A 327 KHMRRIDLEDLKREFIEWAKYAG 349 (488)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999877
No 7
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-91 Score=693.71 Aligned_cols=332 Identities=41% Similarity=0.743 Sum_probs=315.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCC--------Ccc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------PFY 75 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~--------~~~ 75 (340)
+|+||||||||+|||||+|||++||++||.++|+||+||||||++|++++++++|+++|+|||++||++ +|+
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~ 93 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee
Confidence 799999999999999999999999999999999999999999999999999999999999999999974 599
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCC--CCCCCCCCCCC--CCCCCCceEEEeCCC
Q psy2377 76 QTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRI--WRPEPGKILPS--IPINRKPVIRFKNPL 151 (340)
Q Consensus 76 qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~--cr~~~~~~e~~--~~~~~~~~~Rl~~~~ 151 (340)
||+|++.|++++++|+++|++|+|+||+++++.+|+.+.+.|.++.|+|+ ||++ +.+|.. ...|.++++||+.+.
T Consensus 94 QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l-~~~e~~~~~~~G~~~~iR~k~~~ 172 (481)
T 2o5r_A 94 QSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFD-TPERRREYEEKGLRPAVFFKMPR 172 (481)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTC-CHHHHHHHHHTTCCCEEEECCCS
T ss_pred eeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcC-CHHHHHHHHhcCCcceEEEEcCC
Confidence 99999999999999999999999999999999999888888888899999 9998 755321 124668899999986
Q ss_pred CCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEE
Q psy2377 152 YGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (340)
Q Consensus 152 ~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H 231 (340)
+.+.|.|.++|++++++++++||||+|+||+|||||||||||++|||||||||+||++|||+|++++++||+++|.|+|
T Consensus 173 -~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H 251 (481)
T 2o5r_A 173 -KDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAH 251 (481)
T ss_dssp -SCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred -CceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHHHhhcccCcCCCCCccccHHHHH
Q psy2377 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (340)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~ 310 (340)
+|++++.+|+|||||+|+.+|++++++|++|++|++|++.|||++ ++.+++++++++++|+ ++++++++++||++||.
T Consensus 252 ~plil~~~G~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~e~i~~f~-l~~~~~~~~~fd~~kl~ 330 (481)
T 2o5r_A 252 VSTILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLEELISSFS-LDRLSPNPAIFDPQKLK 330 (481)
T ss_dssp ECCEECTTSSBCCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHHHHHHHCC-GGGBCSSCEECCHHHHH
T ss_pred EeeEECCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHHhCC-hhhCCccCcccChHHhh
Confidence 999999999999999999999999999999999999999999987 4568899999999999 99999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHhHHHHHHhcCC
Q psy2377 311 WLNNFYIKSYDDKKLLNLIQPIIKKKKY 338 (340)
Q Consensus 311 ~~n~~~i~~~~~~~~~~~~~~~~~~~~~ 338 (340)
|+|++||+.++++++++++.|||++.|+
T Consensus 331 ~~n~~~i~~~~~~~l~~~~~~~l~~~~~ 358 (481)
T 2o5r_A 331 WMNGYYLRNMPIEKLAELAKPFFEKAGI 358 (481)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTTC
T ss_pred hhCHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999998774
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=6.9e-90 Score=699.23 Aligned_cols=317 Identities=39% Similarity=0.704 Sum_probs=301.0
Q ss_pred ceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCC--------Cc
Q psy2377 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------PF 74 (340)
Q Consensus 3 ~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~--------~~ 74 (340)
+|+|||||||||+|||||+|||++||++||+++|.|++||||||++|++++++++|+++|+|||++||++ ||
T Consensus 129 ~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp~ 208 (592)
T 3al0_C 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPY 208 (592)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCe
Confidence 5899999999999999999999999999999999999999999999999999999999999999999984 59
Q ss_pred cccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q psy2377 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGN 154 (340)
Q Consensus 75 ~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~ 154 (340)
+||+|++.|++++++|+++|+||+|+||+++|++. .++.|+|+|... ..|.++++||+++ ++.
T Consensus 209 ~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~--------~~~~Y~~~~~~~--------~~g~~~~iR~k~~-~~~ 271 (592)
T 3al0_C 209 RQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPHEYK--------EKGHPVTIKFKVL-PGK 271 (592)
T ss_dssp BSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEE--------CCCCSSCCHHHH--------HTTCCEEEEECCC-SSC
T ss_pred eeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhh--------cCCCCCcHHHHh--------hcCCCceEEEECC-CCC
Confidence 99999999999999999999999999999998653 246899886432 2466789999998 578
Q ss_pred eeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecc
Q psy2377 155 ITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (340)
Q Consensus 155 ~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pl 234 (340)
+.|.|.++|.+.+++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++++++||+++|.|+|+|+
T Consensus 272 ~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpl 351 (592)
T 3al0_C 272 TSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351 (592)
T ss_dssp CEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECC
T ss_pred ceeeecccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeee
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHH
Q psy2377 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNN 314 (340)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~ 314 (340)
+++.+|+|||||+|+.+|++|+++|++|++|+|||+.|||+++..+++++++++++|+ ++++++++++||++||.|+|+
T Consensus 352 i~~~~g~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s~~e~i~~f~-~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFD-PKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp CBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCC-TTSBCSSCCBCCHHHHHHHHH
T ss_pred eeCCCCCcccccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCC-hhhcCcccceeCHHHHhhhhH
Confidence 9999999999999999999999999999999999999999975458899999999999 999999999999999999999
Q ss_pred HHhhcCCHHHHHHhHHHHHHhcC
Q psy2377 315 FYIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
+||+.++++++++++.||+++.|
T Consensus 431 ~~i~~~~~~~l~~~~~~~~~~~~ 453 (592)
T 3al0_C 431 KHMRRIDLEDLKREFIEWAKYAG 453 (592)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999877
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=1.4e-81 Score=591.30 Aligned_cols=279 Identities=29% Similarity=0.460 Sum_probs=244.9
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
+.|||||||||||+|||||+|+||+||++||.++|+|++||||||++|++++++++|+++|+|||++||+++++||+|++
T Consensus 4 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~ 83 (298)
T 1nzj_A 4 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHD 83 (298)
T ss_dssp CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHH
T ss_pred CCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
.|++++++|+++|+||+|+||+++|++. | ..|+|+||++ +.+ +.+.++||+++. +.+.|.|.+
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~-------~--~~Y~g~cr~~-~~~------g~~~~~R~r~~~-~~~~f~D~~ 146 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSI-------G--GIYDGHCRVL-HHG------PDNAAVRIRQQH-PVTQFTDQL 146 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHT-------T--SSCCCTTTTT-CCC------STTCEEEECCSS-CCCEEEETT
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHc-------C--CCCCCccccC-CcC------CCCCcEEEecCC-cccceehhh
Confidence 9999999999999999999999999643 2 2799999998 654 456799999985 679999999
Q ss_pred ceeeeecC-CCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC
Q psy2377 162 KGKITISN-KELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 162 ~G~~~~~~-~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g 240 (340)
+|.+.++. .+++||||+|+||+|||||||||||++|||||||||+||++|||+|++++++||++.|.|+|+|++++.+|
T Consensus 147 ~G~~~~~~~~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g 226 (298)
T 1nzj_A 147 RGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG 226 (298)
T ss_dssp TEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---
T ss_pred CcccccCcccCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC
Confidence 99998875 37899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCChHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHH----HHHHhhcccCcCCCCCc
Q psy2377 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIK----QFCYWFNDCKYLSKSPA 302 (340)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~lG~~~~~-~~~~~~~----~~~~~f~~~~~~~~~~~ 302 (340)
+|||||+|+.+|++++. ..++.++|.+|||+++. .++++++ +++++|+ ++++++++.
T Consensus 227 ~KLSKR~g~~~v~~~~~----~~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~~~~f~-~~~~~~~~~ 288 (298)
T 1nzj_A 227 AKLSKQNHAPALPKGDP----RPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWR-LTAVPESAI 288 (298)
T ss_dssp ----------CCCSSCC----HHHHHHHHHHTTCCCCSCGGGSCHHHHHHHHHHTCC-GGGSCCCSB
T ss_pred CcccccCCccChhcCCc----cHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHhCC-HhhCCCCCC
Confidence 99999999999987654 46799999999998754 5788977 4788999 999999985
No 10
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=2.2e-75 Score=583.07 Aligned_cols=306 Identities=21% Similarity=0.305 Sum_probs=261.1
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|||||||||||+|||||||||++||++||.++|.|++||||||++|+.++|+++|+++|+|||++||+++++||+|++
T Consensus 25 ~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~wde~~~~qSer~~ 104 (553)
T 1qtq_A 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFD 104 (553)
T ss_dssp SSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSSSCEEGGGGHH
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCCCCCCCeehcccHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-----CCC----CCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----IPI----NRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~-----~~~----~~~~~~Rl~~~~~ 152 (340)
.|+++|++|+++|+||+|+||+++|++.+..+ ..+.|+++||++ +.+|.. ... +.++++|++.+-
T Consensus 105 ~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~----~~~g~~~~~R~~-s~ee~~~~fe~m~~G~~~~g~~~lR~kid~- 178 (553)
T 1qtq_A 105 QLHAYAIELINKGLAYVDELTPEQIREYRGTL----TQPGKNSPYRDR-SVEENLALFEKMRAGGFEEGKACLRAKIDM- 178 (553)
T ss_dssp HHHHHHHHHHHTTSEEEECCCHHHHHHHHCCS----SSCCCCCTTTTC-CHHHHHHHHHHHHTTCSCTTSCEEEECSCT-
T ss_pred HHHHHHHHHHHCCCceecCCCHHHHHHHhccc----ccCCCCCccccC-chhhhHhHHHHHhCCCccCCceEEEEeccc-
Confidence 99999999999999999999999998776321 235678889998 875311 011 235788887641
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEe---------cC---CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVR---------AD---GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R---------~d---G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
...+.+++||||+| +| |+|||||||+||||+|||||||||.||++|+|+|.+|++
T Consensus 179 -------------~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~ 245 (553)
T 1qtq_A 179 -------------ASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD 245 (553)
T ss_dssp -------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHH
T ss_pred -------------ccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHH
Confidence 23456789999999 67 599999999999999999999999999999999999999
Q ss_pred HhCCC-CCceEEecceecCCCceecccCC----------------CCChHHHHHcCCCHHHHHHHHHHhCCCCCCc--cc
Q psy2377 221 ALGVT-LPFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNE--EI 281 (340)
Q Consensus 221 aLg~~-~p~~~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~--~~ 281 (340)
+||++ .|.+.|...| +.+|+|||||+| ..||++|+++|++|++|++||+.+||+.++. ++
T Consensus 246 alg~~~~P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~ 324 (553)
T 1qtq_A 246 NITIPVHPRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEM 324 (553)
T ss_dssp TSCCSCCCEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCH
T ss_pred HcCCCCCCCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccch
Confidence 99998 6844444433 568999999995 4689999999999999999999999998654 67
Q ss_pred cCHHHHHHhhcccCc-CCCCCccccHHHHHHHH--H--HHh---hcCCHHHHHHhH
Q psy2377 282 FSIKQFCYWFNDCKY-LSKSPAQFNLKKLEWLN--N--FYI---KSYDDKKLLNLI 329 (340)
Q Consensus 282 ~~~~~~~~~f~~~~~-~~~~~~~~d~~kl~~~n--~--~~i---~~~~~~~~~~~~ 329 (340)
.+++++++ |+ ++. .++++++||+.||.|+| + +++ ...+.+++..+.
T Consensus 325 ~~le~~~~-~~-l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g~r~ 378 (553)
T 1qtq_A 325 ASLESCIR-ED-LNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQ 378 (553)
T ss_dssp HHHHHHHH-HH-HHHHSCEECEESSEEEEEBTTCCSSCEEEEEESCSSCGGGCEEE
T ss_pred hhHHHHHH-hC-cccccccccceeccceEEEEcCCCceEEEEecCCCCChHHhhhh
Confidence 89999887 88 999 57999999999999999 3 466 344444444333
No 11
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.8e-71 Score=554.83 Aligned_cols=273 Identities=31% Similarity=0.483 Sum_probs=227.7
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
+.|+|||||||||+|||||+|||++||++||.++|+|++||||||++|+.++|+++|+++|+|||++||+ +++||+|++
T Consensus 95 g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~-~~~qSdr~~ 173 (553)
T 3aii_A 95 GEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE-TVIQSDRME 173 (553)
T ss_dssp SCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSE-EEEGGGGHH
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC-CcccccCHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999986 789999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-----CCCCC--CceEEEeCCCCCc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----IPINR--KPVIRFKNPLYGN 154 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~-----~~~~~--~~~~Rl~~~~~~~ 154 (340)
.|++++++|+++|+||+|+||++++++.+.. .++|+||++ +.+|.. ...|. .+++|++.+.
T Consensus 174 ~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~--------g~~~~cR~~-s~ee~l~~f~~m~~G~~g~~~lR~k~d~--- 241 (553)
T 3aii_A 174 TYYEYTEKLIERGGAYVCTCRPEEFRELKNR--------GEACHCRSL-GFRENLQRWREMFEMKEGSAVVRVKTDL--- 241 (553)
T ss_dssp HHHHHHHHHHHTTSEEEECSCHHHHHHHHHT--------TCCCGGGGC-CHHHHHHHHHHGGGSCTTSCEEEECCCT---
T ss_pred HHHHHHHHHHHcCCceeCCCCHHHHHHHhhc--------CCCCccccC-CHHHHHHHHHHHhcCCcCceEEEEEccc---
Confidence 9999999999999999999999999877641 467999998 876311 01222 3688887632
Q ss_pred eeEEeccceeeeecCCCCCCeEEEec---------C---CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHh
Q psy2377 155 ITWNDLIKGKITISNKELDDLVIVRA---------D---GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL 222 (340)
Q Consensus 155 ~~~~D~i~G~~~~~~~~~~DfVl~R~---------d---G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aL 222 (340)
...+.+++||||||. | |+|||||||+|||+.|||||||||.||++||++|.+|+++|
T Consensus 242 -----------~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~al 310 (553)
T 3aii_A 242 -----------NHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHL 310 (553)
T ss_dssp -----------TCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHH
T ss_pred -----------ccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHc
Confidence 233457899999997 4 69999999999999999999999999999999999999999
Q ss_pred CCCCCceEEecceecCCCceecccCC----------------CCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHH
Q psy2377 223 GVTLPFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQ 286 (340)
Q Consensus 223 g~~~p~~~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~ 286 (340)
|++.|.|+|+|+| +.+|+|||||++ ..||++|+++|++|++|++||+.+||+.+
T Consensus 311 G~~~P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~--------- 380 (553)
T 3aii_A 311 GWEPPEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIA--------- 380 (553)
T ss_dssp TCCCCEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSS---------
T ss_pred CCCCCeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCc---------
Confidence 9999999999998 679999999997 46899999999999999999999998642
Q ss_pred HHHhhcccCcCCCCCccccHHHHHHHHHHHhhcCCH
Q psy2377 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDD 322 (340)
Q Consensus 287 ~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~~~~~ 322 (340)
+..|++++|.+.|+++|+...+
T Consensus 381 --------------~~~~s~~~L~~~~r~~l~~~a~ 402 (553)
T 3aii_A 381 --------------DSTMSWKKIYGLNRSILEEEAR 402 (553)
T ss_dssp --------------CBCCCHHHHHHHHHHHHTTTCE
T ss_pred --------------cccccHHHHHHHHHHHhhccCh
Confidence 2456777777777777776554
No 12
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=4.3e-72 Score=580.39 Aligned_cols=288 Identities=26% Similarity=0.378 Sum_probs=250.9
Q ss_pred CceEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCccccchHHHHHHHHHHHHHcCCCCCCCCccccccHH
Q psy2377 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (340)
Q Consensus 2 ~~~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~ 81 (340)
++|||||||||||+|||||+|||++||++||.++|.|++||||||++|+.++|+++|+++|+|||++||+++++||+|++
T Consensus 65 ~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~wde~~~~qSer~d 144 (851)
T 2hz7_A 65 PRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHFYYASDYFD 144 (851)
T ss_dssp SSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTTCEEEGGGGHH
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccHhhhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-----CC----CCCCceEEEeCCCC
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----IP----INRKPVIRFKNPLY 152 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~-----~~----~~~~~~~Rl~~~~~ 152 (340)
.|++++++|+++|+||+||||+++|++.+..+ ..+.|++.||++ +.+|.. .. .+.++++|+|.+-
T Consensus 145 ~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~----~~~G~~s~~R~l-s~ee~l~~fe~m~~G~~~~g~~vlR~Kid~- 218 (851)
T 2hz7_A 145 RYYAYAEQLIRQGDAYVESVSPEELSRLRGNA----TTPGTPSPYRDR-SVEENLDLLRRMKAGEFADGEHVLRAKIDL- 218 (851)
T ss_dssp HHHHHHHHHHHTTSEEEECSCHHHHHHHHCBT----TBCCCCCTTTTC-CHHHHHHHHHHHHTTCSCTTSCEEEECCCT-
T ss_pred HHHHHHHHHHHCCCcEeecCCHHHHHHHhcch----hccCCCcccccC-CHHHHhhHHHHHhcCCcccCCeeEEEeccc-
Confidence 99999999999999999999999998765321 124577789998 875310 01 2237899998742
Q ss_pred CceeEEeccceeeeecCCCCCCeEEEecC------------CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHH
Q psy2377 153 GNITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (340)
Q Consensus 153 ~~~~~~D~i~G~~~~~~~~~~DfVl~R~d------------G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~ 220 (340)
...+.+++||||+|++ |+||||||||||||+|||||||||.||+.|+++|.+|++
T Consensus 219 -------------~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~ 285 (851)
T 2hz7_A 219 -------------TAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLME 285 (851)
T ss_dssp -------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHH
T ss_pred -------------cccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHH
Confidence 2335577999999987 699999999999999999999999999999999999999
Q ss_pred HhCCCC-C---ceEEecceecCCCceecccCC----------------CCChHHHHHcCCCHHHHHHHHHHhCCCCCCc-
Q psy2377 221 ALGVTL-P---FYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNE- 279 (340)
Q Consensus 221 aLg~~~-p---~~~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~- 279 (340)
+||++. | .|+|+++ +|+|||||++ ..||++|+++||+|++|++||+.+||+..+.
T Consensus 286 alG~~~~P~~~~fahLn~----~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~ 361 (851)
T 2hz7_A 286 KLNFDPRPHQYEFGRRGL----EYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRT 361 (851)
T ss_dssp HTTCSSCCEEEEECCEEE----TTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEE
T ss_pred HcCCCCCCCceEEEEecC----CCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCccc
Confidence 999986 8 4666654 7999999995 3689999999999999999999999998654
Q ss_pred -cccCHHHHHHhhcccCcC-CCCCccccHHHHHHHHH
Q psy2377 280 -EIFSIKQFCYWFNDCKYL-SKSPAQFNLKKLEWLNN 314 (340)
Q Consensus 280 -~~~~~~~~~~~f~~~~~~-~~~~~~~d~~kl~~~n~ 314 (340)
++.+++.++ .|+ ++.+ ++++++||+.||.|+|.
T Consensus 362 ~e~~~le~~~-r~~-l~~~~~r~~av~d~~Kl~~~N~ 396 (851)
T 2hz7_A 362 VDIAVYENAV-RDD-LNHRAPRVMAVLDPVKVTLTNL 396 (851)
T ss_dssp ECHHHHHHHH-HHH-HHTTCCEECEESSEEEEEETTC
T ss_pred ccHHHHHHHH-Hhc-ccccccccceEecceeEEEecC
Confidence 556676554 478 9994 79999999999999985
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=6e-38 Score=316.70 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=189.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCcEEEEecCCccccch---------------------------
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDINRST--------------------------- 51 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar-----~~~G~~vlRieD~d~~r~~--------------------------- 51 (340)
+++.-||||||++||||+|+|+++|+++| .++|.|++||||+|+.|.+
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 34444999999999999999999999987 3577899999999954433
Q ss_pred ---HHHHHHHHHHHHHcCCCCCCCCccccc-cHH-HHHHHHHHHHHcC-CcccccCCHHHHHHHHHHHHhcCCCC--CCC
Q psy2377 52 ---LSATQTIIDGMKWLGLNYDEGPFYQTK-RIN-RYFEIINYLLSND-YAYYCYSSVEEIESFRKKQRSFGEKP--RYN 123 (340)
Q Consensus 52 ---~~~~~~i~~~l~~lGi~~d~~~~~qS~-~~~-~y~~~~~~L~~~G-~aY~c~cs~~~l~~~~~~~~~~~~~~--~Y~ 123 (340)
+.+.+.|.++|+||||+||. ++||+ |.+ .|.+++++|+++| .+|.|++....+. +..+...+-.+ .|.
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D~--~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~--~~~~y~~~~~~~~~~~ 177 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVDL--LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIA--KQPPLPENWWPAMVYC 177 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCEE--EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHT--TCCCCCTTCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCceE--EechhhccchHHHHHHHHHHHchHHHHHHHHhhcccc--ccccccCCceeccccc
Confidence 45999999999999999985 59999 988 9999999999999 8887763211100 00000001011 355
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEE
Q psy2377 124 RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVI 203 (340)
Q Consensus 124 g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvI 203 (340)
..|+.. +.+ ... .+. ..+|++.. .|...|.|.+.|....... -|+ |.|+|+|+++|| +
T Consensus 178 ~~~~~~-~~~-~~~-~~~-~~~~f~~~-~g~~~~~d~~~G~g~~~w~--~d~------~~~~~~l~~~vd---------~ 235 (523)
T 1irx_A 178 PEHRRE-AEI-IEW-DGG-WKVKYKCP-EGHEGWVDIRSGNVKLRWR--VDW------PMRWSHFGVDFE---------P 235 (523)
T ss_dssp TTTCCE-ECE-EEE-CSS-SCEEECCS-SSCCCEECTTSSCEEECHH--HHH------HHHHHHSCCCBC---------C
T ss_pred hhhCCc-ccc-ccc-CCC-Cceeeeec-CCCccccCCcCCCCCCCCC--cch------HhhHHHcCCCCc---------C
Confidence 556554 321 000 111 34677663 3666777766433221100 011 456666665555 4
Q ss_pred eCCCCCC---cHHHHHHHH-HHhCCCCCceEEecceecC-CCceecccCCCC-ChHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy2377 204 RGDDHIN---NTPRQINIL-KALGVTLPFYGHLPMVIDS-NKVKISKRKEAT-DIMYYKKKGFLPEAILNYLARLGWSHG 277 (340)
Q Consensus 204 rG~D~~~---~t~~q~~l~-~aLg~~~p~~~H~pll~~~-~g~KLSKR~g~~-~l~~l~~~G~~p~al~~~l~~lG~~~~ 277 (340)
.|.||+. |++.+..++ ++||+++|.|.|++++.+. +|+|||||+|+. ++.++++. +.|+++|+||+..|+..+
T Consensus 236 ~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~l~~~~~~~~ 314 (523)
T 1irx_A 236 AGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYARHRPNKE 314 (523)
T ss_dssp EEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHSSCTTSC
T ss_pred CCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHHHHhcCCCCC
Confidence 4555554 444444444 7999999999999999887 799999999975 99999998 999999999998887442
Q ss_pred CccccC----HHHHHHhhcccCcCCCCCccccHH--HHHHHHHHH-hhcC-CHHHHHHhHHHH
Q psy2377 278 NEEIFS----IKQFCYWFNDCKYLSKSPAQFNLK--KLEWLNNFY-IKSY-DDKKLLNLIQPI 332 (340)
Q Consensus 278 ~~~~~~----~~~~~~~f~~~~~~~~~~~~~d~~--kl~~~n~~~-i~~~-~~~~~~~~~~~~ 332 (340)
..++ ++++.+.| +++.+....++.. ||.|+|+.| |+.+ +++++. ...||
T Consensus 315 --~~fs~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~n~~~~i~~~~~~~~~~-~~~p~ 371 (523)
T 1irx_A 315 --IKIDLGLGILNLYDEF---EKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLV-AQAPF 371 (523)
T ss_dssp --EEECCSTTHHHHHHHH---HHHHHHHTTSCC-----CHHHHHHHHHCSSCCCCCC-CCCCH
T ss_pred --ceeCcchhHHHHHHHH---HHHHHHHhcccccchhhhhhcceeEeeccCCCCCCC-CCCCH
Confidence 2233 44444443 3555555555655 699999999 9987 665533 55566
No 14
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.94 E-value=1e-26 Score=237.67 Aligned_cols=268 Identities=16% Similarity=0.112 Sum_probs=193.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCcc------------------------------------
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDI------------------------------------ 47 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~------------------------------------ 47 (340)
+|+|||++||||+|++++++.++| +..|+-|.+ |+|.+.
T Consensus 111 spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~ 190 (592)
T 1iq0_A 111 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQD 190 (592)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHH
Confidence 699999999999999999999999 678988777 667641
Q ss_pred ----------------------ccchHHHHHHHHHHHHHcCCCCCCCCcccccc--HHHHHHHHHHHHHcCCcccccCCH
Q psy2377 48 ----------------------NRSTLSATQTIIDGMKWLGLNYDEGPFYQTKR--INRYFEIINYLLSNDYAYYCYSSV 103 (340)
Q Consensus 48 ----------------------~r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~--~~~y~~~~~~L~~~G~aY~c~cs~ 103 (340)
++.++.+.+.+.+++++||+.+|. ....|++ .+.+.+++++|.++|.+|.|.
T Consensus 191 ~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~-~~~es~~~~~~~v~~~~~~L~~kG~~y~~~--- 266 (592)
T 1iq0_A 191 PEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDL-LVWESDIVRAGLLQKALALLEQSPHVFRPR--- 266 (592)
T ss_dssp TTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSE-EEEHHHHHHTTHHHHHHHHHTTSTTEECCS---
T ss_pred HHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEE-eccCCcccccchHHHHHHHHHHCCCcccCc---
Confidence 122345667788999999999986 2456665 678999999999999999871
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEecCCC
Q psy2377 104 EEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGI 183 (340)
Q Consensus 104 ~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ 183 (340)
.| .|+|. +-++.+.. | ....+++.|+.|+||.
T Consensus 267 ------------~g---~~~G~-------------------~~~~~~~~----------g----~~~~l~~~vi~ksdG~ 298 (592)
T 1iq0_A 267 ------------EG---KYAGA-------------------LVMDASPV----------I----PGLEDPFFVLLRSNGT 298 (592)
T ss_dssp ------------SS---TTTTC-------------------EEEECTTT----------S----CSCSCCEEEEECTTSC
T ss_pred ------------cc---CcCCC-------------------EEEechhc----------C----CCCCCCceEEEecCCc
Confidence 01 22221 11222211 1 1123467999999999
Q ss_pred cchhhHH---Hhhh-------hcC----------------------CCcEE--EeCCCCCCcHHHHHHHHHHhCCCCC--
Q psy2377 184 PTYNFCA---AIDD-------WDM----------------------KITHV--IRGDDHINNTPRQINILKALGVTLP-- 227 (340)
Q Consensus 184 ptY~la~---vvDD-------~~~----------------------githv--IrG~D~~~~t~~q~~l~~aLg~~~p-- 227 (340)
|+|.+.+ ++++ ... +.+|+ |+|.||..+.+++..+++++|++.|
T Consensus 299 ~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~ 378 (592)
T 1iq0_A 299 ATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAE 378 (592)
T ss_dssp BCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHT
T ss_pred eEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCC
Confidence 9998755 4552 122 78888 7999999999999999999999763
Q ss_pred ceEEecc--eecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHH-----HHHHhhcccCcCCC
Q psy2377 228 FYGHLPM--VIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIK-----QFCYWFNDCKYLSK 299 (340)
Q Consensus 228 ~~~H~pl--l~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~-----~~~~~f~~~~~~~~ 299 (340)
.+.|++. |. .+|+|||||.|+ +++++|+++|+ +++++++...+...++.| .+. +++++|. ++..+.
T Consensus 379 ~~~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~--~~~~~~~~~~~~~~~~~e--~~a~~vg~~aiRyf~-L~~~~~ 452 (592)
T 1iq0_A 379 KAHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEAT--RRARAIVEEKNPDHPDKE--EAARMVALGAIRFSM-VKTEPK 452 (592)
T ss_dssp TEEEEEECCEE-ETTBCSCC----CCBHHHHHHHHH--HHHHHHHHHHCTTCSCHH--HHHHHHHHHHHHHHH-HHSCTT
T ss_pred cEEEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHH--HHHHHHHHhhCCCCCcHH--HHHHhhcHHHHHHHH-HhcCCC
Confidence 6889954 64 478999999997 68999999876 778888888765433333 222 4788899 999999
Q ss_pred CCccccHHHHHHHHHHHhhcCCHHHHHHhHHHHHHhc
Q psy2377 300 SPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKK 336 (340)
Q Consensus 300 ~~~~~d~~kl~~~n~~~i~~~~~~~~~~~~~~~~~~~ 336 (340)
++..||++++.+.|++ .-+ -..+...++...+.+.
T Consensus 453 ~~~~Fd~d~~~~~~~~-~~~-ylqya~aR~~sil~k~ 487 (592)
T 1iq0_A 453 KQIDFRYQEALSFEGD-TGP-YVQYAHARAHSILRKA 487 (592)
T ss_dssp SCEEECHHHHHCSSSS-SHH-HHHHHHHHHHHHHHHH
T ss_pred CCCeecHHHHHHHhcc-chH-HHHHHHHHHHHHHHhh
Confidence 9999999999988763 000 1123456666666654
No 15
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=5.4e-26 Score=224.54 Aligned_cols=226 Identities=19% Similarity=0.132 Sum_probs=165.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCc---EEEEecCCccc-------------cchHHHHHHHHHHHHHcCCCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGI---FILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~---~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~~d 70 (340)
.|+|+|++||||+|++++.|+++| ...|+ |+..++|+|++ ...+.+++.+.+++++||+.+|
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 699999999999999999999999 56674 66678999864 2357899999999999999997
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYY------CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~------c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~ 144 (340)
....+.|++++.+.+++++|+++|++|. +||.++. +.| |..+.. +.++. ..|
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~--------------~~y-g~Ls~~-~~~~~--~~g---- 169 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF--------------KDY-GKLSHR-HLDEL--QAG---- 169 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC--------------TTT-TTTTTC-SCC-----------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc--------------ccc-ccccCC-ChHHh--hcc----
Confidence 6445889999999999999999999994 4665431 234 332333 33321 001
Q ss_pred EEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec-------------CCCcchhhHHHhhh-hcCCCcEEE--eCCCC
Q psy2377 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAIDD-WDMKITHVI--RGDDH 208 (340)
Q Consensus 145 ~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~-------------dG~ptY~la~vvDD-~~~githvI--rG~D~ 208 (340)
-|+. ......+..||+|||. .|.|+||+.|++.. ...|-+..| .|.|+
T Consensus 170 ~r~~----------------~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl 233 (462)
T 3tqo_A 170 ARVE----------------VSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDL 233 (462)
T ss_dssp -----------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGG
T ss_pred Cccc----------------cccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEcccccc
Confidence 0111 1122456789999996 47899999999643 333666555 58887
Q ss_pred C----CcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCC
Q psy2377 209 I----NNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (340)
Q Consensus 209 ~----~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~ 275 (340)
+ .|...|... +.|.+.+.|.+++.+++.+|+|||||.|+ ++++++++. +.|+++|.||+.-.+.
T Consensus 234 ~FpHheneiaqs~a--~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls~~yr 302 (462)
T 3tqo_A 234 KFPHHENEIAQSEA--GEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLRYFLLSGHYR 302 (462)
T ss_dssp TTTHHHHHHHHHHH--HHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHSCTT
T ss_pred ccHHHHhHHHHHHH--HcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhhhhhccCCCC
Confidence 4 566666542 34765567766666678899999999997 899999986 9999999999986553
No 16
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.93 E-value=3.8e-26 Score=226.40 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=172.3
Q ss_pred ceEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccccchHHHHHHHHHH-HH-HcCCCC--CCC
Q psy2377 3 IVRTRF-APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDINRSTLSATQTIIDG-MK-WLGLNY--DEG 72 (340)
Q Consensus 3 ~~~~Rf-aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~r~~~~~~~~i~~~-l~-~lGi~~--d~~ 72 (340)
+|++=| +|+|||+||+||+|++++++.+|| +..|.-|+| |+|.+ +++.....++... .+ ++|.+. ++
T Consensus 31 ~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G--~Q~g~l~~~~~~~y~~~~~~~~~~~p~- 107 (464)
T 3fnr_A 31 SFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG--NQIYLLGLSILLSVKESILHENVEYPE- 107 (464)
T ss_dssp EEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH--HHHHHHHHHHHHHHHHHTSCCCCCCCS-
T ss_pred EEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc--HHHHHHHHHHHHHHHHHhcCCCCCCch-
Confidence 366777 799999999999999999999999 679999999 77888 7777777777544 44 466542 22
Q ss_pred CccccccHHHHHHHHHHHHHc-CCcccccCCH---------HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2377 73 PFYQTKRINRYFEIINYLLSN-DYAYYCYSSV---------EEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRK 142 (340)
Q Consensus 73 ~~~qS~~~~~y~~~~~~L~~~-G~aY~c~cs~---------~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~ 142 (340)
..|++ +.+.++++++.++ +..+.-.-.. ..++.+++.-...| ..|+.+..+. +... ..+
T Consensus 108 ~~y~g---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~--V~fD~~~~Es-s~~~-----~~~ 176 (464)
T 3fnr_A 108 QYYKG---EYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAK--IKIDSYVSER-SYYD-----ALN 176 (464)
T ss_dssp SCCCS---HHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTT--CCCSCEEEGG-GGST-----THH
T ss_pred hhcCc---cHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhC--CCceeecCHH-HHHH-----HHH
Confidence 35666 4566777777765 4433210000 11222333334455 4566544332 2221 111
Q ss_pred ceE-EEeCCCCCceeEEeccceeeeecCCCC---CCeEEEecCCCcchh---hHHHhhhhcCCCcEE--EeCCCCCCcHH
Q psy2377 143 PVI-RFKNPLYGNITWNDLIKGKITISNKEL---DDLVIVRADGIPTYN---FCAAIDDWDMKITHV--IRGDDHINNTP 213 (340)
Q Consensus 143 ~~~-Rl~~~~~~~~~~~D~i~G~~~~~~~~~---~DfVl~R~dG~ptY~---la~vvDD~~~githv--IrG~D~~~~t~ 213 (340)
.++ +|+. .|.+...| |+.++..+.. .|+||+|+||.|||. +|.++++..++++++ |+|+||+.+.+
T Consensus 177 ~vv~~L~~--~g~~~e~d---Ga~~~~~~~~g~~~~~vl~ksDG~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~ 251 (464)
T 3fnr_A 177 ATLESLKE--HKGIYEQE---GKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIP 251 (464)
T ss_dssp HHHHHHHH--TTCEEEET---TEEEECGGGGTCSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHH
T ss_pred HHHHHHHH--CCCEEEeC---CeEEEEecccCCCCceEEEeCCCceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHH
Confidence 122 2332 24555555 8888875543 579999999999998 677799999999999 69999999999
Q ss_pred HHHHHHHHhCCCCCceEEec--ce-ecCCC--ceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 214 RQINILKALGVTLPFYGHLP--MV-IDSNK--VKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 214 ~q~~l~~aLg~~~p~~~H~p--ll-~~~~g--~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
++..+++++|+++|.+.|++ ++ +..+| .|||||.|+ +++.++++. +.++++|.|++.
T Consensus 252 ~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~-~g~dalRy~~l~ 314 (464)
T 3fnr_A 252 RMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE-IGSDALRYIFLS 314 (464)
T ss_dssp HHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH-HCHHHHHHHTTS
T ss_pred HHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhh-ccHHHHHHHHHh
Confidence 99999999999888877775 55 44556 599999996 699999987 788999888764
No 17
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.93 E-value=9.7e-26 Score=223.96 Aligned_cols=236 Identities=19% Similarity=0.175 Sum_probs=166.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCC---cEEEEecCCccc---c----------chHHHHHHHHHHHHHcCCCCC
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG---IFILRIEDTDIN---R----------STLSATQTIIDGMKWLGLNYD 70 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G---~~vlRieD~d~~---r----------~~~~~~~~i~~~l~~lGi~~d 70 (340)
.|+|+|++||||+|+++++|+++| +..| .|+.+++|+|++ + ..+.+.+.+.+++++||+.++
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 688889999999999999999999 3456 566778999964 1 256889999999999999984
Q ss_pred CCCccccccHHHHHHHHHHHHHcCCcccc------cCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2377 71 EGPFYQTKRINRYFEIINYLLSNDYAYYC------YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (340)
Q Consensus 71 ~~~~~qS~~~~~y~~~~~~L~~~G~aY~c------~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~ 144 (340)
....++|++++.+++++++|+++|++|.+ ||+.+. +.|..-|. . ++++. ..|.
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~--------------~~yg~lsg-~-~~~~l--~~g~--- 167 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD--------------PTYGVLSR-Q-DLDQL--QAGA--- 167 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC--------------TTTTTTTT-C---------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc--------------cccccccC-C-CHHHh--hcCC---
Confidence 43568999999999999999999999986 665431 23422332 2 22211 0110
Q ss_pred EEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec--C-----------CCcchhhHHHhh-hhcCCCcEEEe--CCC-
Q psy2377 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA--D-----------GIPTYNFCAAID-DWDMKITHVIR--GDD- 207 (340)
Q Consensus 145 ~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~--d-----------G~ptY~la~vvD-D~~~githvIr--G~D- 207 (340)
|+. + .....+..||++||+ + |+|+||++|++. ....|.++.|+ |.|
T Consensus 168 -rv~--------~--------~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl 230 (461)
T 1li5_A 168 -RVD--------V--------VDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDL 230 (461)
T ss_dssp ------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGG
T ss_pred -ccc--------c--------hhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCcc
Confidence 111 0 012345679999986 3 458889999853 33447888888 999
Q ss_pred ---CCCcHHHHHHHHHHhCCCCCc-eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCcccc
Q psy2377 208 ---HINNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIF 282 (340)
Q Consensus 208 ---~~~~t~~q~~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~ 282 (340)
|+.+.+.|... ++|.+.|. +.|..++.. +|+|||||.|+ ++++++++. +.|+++|.||+...+ ...-.+
T Consensus 231 ~fpH~~~~~aq~~a--~~g~~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~~-~g~dalR~~ll~~~~--~~~~~f 304 (461)
T 1li5_A 231 MFPHHENEIAQSTC--AHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSGHY--RSQLNY 304 (461)
T ss_dssp TTTHHHHHHHHHHH--HSSSCCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSSCT--TSCEEE
T ss_pred CchHHHHHHHHHHH--hcCCCCCcEEEEeeEEEE-CCeEccccCCCccChhHHhhh-CCHHHHHHHHHcCCc--CCCCCC
Confidence 56677777754 35887664 677777654 79999999997 899999986 999999999996322 222235
Q ss_pred CHHHHH
Q psy2377 283 SIKQFC 288 (340)
Q Consensus 283 ~~~~~~ 288 (340)
+.+.+.
T Consensus 305 s~~~l~ 310 (461)
T 1li5_A 305 SEENLK 310 (461)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 555443
No 18
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.91 E-value=8.3e-24 Score=212.16 Aligned_cols=266 Identities=17% Similarity=0.140 Sum_probs=170.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~l 65 (340)
+++...|+|||++||||+|+++++|+++| ...|+.|+++.++| +....+.+.+.+.+++++|
T Consensus 8 ~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 87 (497)
T 2csx_A 8 YVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL 87 (497)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 68888899999999999999999999999 56999999988887 5567788999999999999
Q ss_pred CCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhcCCCCCCCCCCCC--CCCCCCCC
Q psy2377 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRP--EPGKILPS 136 (340)
Q Consensus 66 Gi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~--~~~~~e~~ 136 (340)
|+.+|. .+++++ |.+.+++++++|.++|++|.| +|...+....... ....|.|.. . +++.
T Consensus 88 gi~~d~-~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~-------~~~~~~c~~~~~-~~~~-- 156 (497)
T 2csx_A 88 KIEYTK-FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAE-------LAEDHTCPIHQK-KCEY-- 156 (497)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------------------------------
T ss_pred CCcCCC-CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHH-------hccCCCCCCCCC-CCeE--
Confidence 999985 567888 999999999999999999988 6766542110000 000144532 1 2221
Q ss_pred CCCCCCceEEEeCCCCCc--e--------eE-Eeccceee-eecCCCCCCeEEEe--cC---CC--c---chhh------
Q psy2377 137 IPINRKPVIRFKNPLYGN--I--------TW-NDLIKGKI-TISNKELDDLVIVR--AD---GI--P---TYNF------ 188 (340)
Q Consensus 137 ~~~~~~~~~Rl~~~~~~~--~--------~~-~D~i~G~~-~~~~~~~~DfVl~R--~d---G~--p---tY~l------ 188 (340)
-....+.|+...-.. . .+ .+..+..+ .+-...+.|++|.| .+ |. | ++++
T Consensus 157 ---~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds 233 (497)
T 2csx_A 157 ---IKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDA 233 (497)
T ss_dssp ----CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHH
T ss_pred ---EecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEeccc
Confidence 112244555432000 0 00 00000000 00012458999999 44 53 4 4442
Q ss_pred ----HHHhhh---hcCCCcEEEeCCCCCC----cHHHHHHHHHHhCCCCCc-eEEecceecCCCceecccCCC-CChHHH
Q psy2377 189 ----CAAIDD---WDMKITHVIRGDDHIN----NTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYY 255 (340)
Q Consensus 189 ----a~vvDD---~~~githvIrG~D~~~----~t~~q~~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l 255 (340)
++++.+ ....++..+.|.|++. +.+.| +.++|+++|. +.|++++.. +|+|||||.|+ +++.++
T Consensus 234 ~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~---l~~~g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dl 309 (497)
T 2csx_A 234 LFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAF---LMSLGYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEV 309 (497)
T ss_dssp HTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHH---HHHHTCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHH
T ss_pred chhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHH---HHHcCCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHH
Confidence 333433 2237787788999975 44444 3577988875 788888766 89999999997 789999
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2377 256 KKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (340)
Q Consensus 256 ~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~ 289 (340)
++. +.++++|.||+..+- ......++.+.+.+
T Consensus 310 i~~-~g~DalR~~ll~~~~-~~~d~~fs~~~l~~ 341 (497)
T 2csx_A 310 VQE-YGLDEVRYFLLREVP-FGQDGDFSKKAILN 341 (497)
T ss_dssp HHH-HCHHHHHHHHHHSSC-TTSCEECCHHHHHH
T ss_pred HHH-CCcHHHHHHHHhcCC-cccCCCCChHHHHH
Confidence 975 999999999998542 22223356655443
No 19
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.90 E-value=4.4e-23 Score=204.86 Aligned_cols=225 Identities=17% Similarity=0.178 Sum_probs=146.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCc---EEEEecCC----------ccc-------------cchHHHHHHHHH
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGI---FILRIEDT----------DIN-------------RSTLSATQTIID 60 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~---~vlRieD~----------d~~-------------r~~~~~~~~i~~ 60 (340)
.|+|+|++||||+|++++.|+++| ...|+ |+..|+|+ |.+ ...+.+++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 588889999999999999999999 44554 66668888 432 235789999999
Q ss_pred HHHHcCCCCCCCCccccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-CC
Q psy2377 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGK-IL 134 (340)
Q Consensus 61 ~l~~lGi~~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~-~e 134 (340)
++++||+.+|....+.+++++.+++++++|+++|++|. .||.++ .+.| |..+.. +. ++
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--------------f~~y-G~ls~~-~~~~~ 192 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--------------FKSY-GEMAGI-DLIDK 192 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--------------CTTT-TTTTC-------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--------------cCCc-cccCCC-Chhhh
Confidence 99999999986545789999999999999999999995 355433 1234 332332 22 21
Q ss_pred CCCCCCCCceEEEeCCCCCceeEEeccceeeeecCCCCCCeEEEec---C-------------CCcchhhHHHh--hhhc
Q psy2377 135 PSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA---D-------------GIPTYNFCAAI--DDWD 196 (340)
Q Consensus 135 ~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~---d-------------G~ptY~la~vv--DD~~ 196 (340)
+.. +.. .++...+.++.||+|||. + |+|.||+.|++ .+++
T Consensus 193 ------------~~~---g~r-------~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~l 250 (501)
T 3sp1_A 193 ------------DMT---LPR-------VDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYF 250 (501)
T ss_dssp ---------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHT
T ss_pred ------------hcc---CCc-------cCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHc
Confidence 111 100 011123456789999986 2 68999999985 3444
Q ss_pred CCC--cEEEeCCCCC----CcHHHHHHHHHHhCCCCCc-eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHH
Q psy2377 197 MKI--THVIRGDDHI----NNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNY 268 (340)
Q Consensus 197 ~gi--thvIrG~D~~----~~t~~q~~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~ 268 (340)
|- +.-+-|.|++ .|.+.|... +.|-+.+. |.|..++ +.+|+|||||.|+ ++++++++.|+.|+++|.|
T Consensus 251 -g~~~DIH~gG~DLifpHheneiAqs~a--~~g~~~~~~w~H~g~v-~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~ 326 (501)
T 3sp1_A 251 -KDALDIHLGGVDHIGVHHINEIAIAEC--FLNKKWCDVFVHGEFL-IMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYL 326 (501)
T ss_dssp -TTCCCEEEEEGGGTTTHHHHHHHHHHH--HHTSCCCSEEEEECCE-ECC----------CCCHHHHHHTTCCHHHHHHH
T ss_pred -CCCceEEeeccccccchHHHHHHHHHH--ccCCCCCeEEEEeeeE-eeCCeEccccCCCcCCHHHHHhcCCCHHHHHHH
Confidence 44 3234599985 456666542 23544444 5666666 5699999999997 8999999999999999999
Q ss_pred HHHhCCC
Q psy2377 269 LARLGWS 275 (340)
Q Consensus 269 l~~lG~~ 275 (340)
|+.-.+.
T Consensus 327 lls~~yr 333 (501)
T 3sp1_A 327 CLTSHYR 333 (501)
T ss_dssp HHTSCTT
T ss_pred HHhccCC
Confidence 9876443
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.90 E-value=9.1e-23 Score=204.64 Aligned_cols=261 Identities=19% Similarity=0.207 Sum_probs=172.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~l 65 (340)
+++--.|+|||++||||+|+++++|+++| +..|+.|+++.++| +....+.+.+.+.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666689999999999999999999999 56999999988777 4456788899999999999
Q ss_pred CCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCCCC
Q psy2377 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPE-PGKILPSI 137 (340)
Q Consensus 66 Gi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~-~~~~e~~~ 137 (340)
|+.+|. .+++++ |.+.+++++++|.++|.+|.+ +|.+.+- . ......-+|.|..- .+.+.
T Consensus 86 gi~~d~-~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~--~------~~~~~l~~g~c~~~~~~v~~--- 153 (500)
T 2d5b_A 86 GIAYDD-FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCER--F------YTEKELVEGLCPIHGRPVER--- 153 (500)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE--E------CCTTTSBTTBCTTTCSBCEE---
T ss_pred CCcCCC-CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCc--c------cCchhccCCcCCCCCCeeeE---
Confidence 999985 456777 899999999999999999976 3433210 0 00000113455321 01110
Q ss_pred CCCCCceEEEeCCCCCceeEEeccc-----e--eee----------ecCCCCCCeEEEe--cC---CC--c---------
Q psy2377 138 PINRKPVIRFKNPLYGNITWNDLIK-----G--KIT----------ISNKELDDLVIVR--AD---GI--P--------- 184 (340)
Q Consensus 138 ~~~~~~~~Rl~~~~~~~~~~~D~i~-----G--~~~----------~~~~~~~DfVl~R--~d---G~--p--------- 184 (340)
-....+-++... +.|.+. + .+. +-...+.|++|.| .+ |. |
T Consensus 154 --~~~~~wf~~l~~-----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~v 226 (500)
T 2d5b_A 154 --RKEGNYFFRMEK-----YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFV 226 (500)
T ss_dssp --EEEEEEEECGGG-----GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECH
T ss_pred --EecCceEEEcHH-----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEE
Confidence 000112222210 011000 0 000 0013468999999 44 53 4
Q ss_pred ------------chhhHHHhhhhcCCCcEEEeCCCCCCcHHHHH---HHHHHhCCCCCc-eEEecceecCCCceecccCC
Q psy2377 185 ------------TYNFCAAIDDWDMKITHVIRGDDHINNTPRQI---NILKALGVTLPF-YGHLPMVIDSNKVKISKRKE 248 (340)
Q Consensus 185 ------------tY~la~vvDD~~~githvIrG~D~~~~t~~q~---~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g 248 (340)
.|+..+..+++. +.+..+.|.||+. +.+. +.+.++|+++|. +.|+++++..+|+|||||.|
T Consensus 227 Wfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~G 303 (500)
T 2d5b_A 227 WFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLG 303 (500)
T ss_dssp HHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTT
T ss_pred ccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCC
Confidence 355444344443 5666788999976 3221 344678998885 78889998879999999999
Q ss_pred C-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHH
Q psy2377 249 A-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFC 288 (340)
Q Consensus 249 ~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~ 288 (340)
+ +++.++++. +.++++|.||+..+- ......++.+.+.
T Consensus 304 N~i~p~d~i~~-~g~DalR~~ll~~~~-~~~d~~fs~~~~~ 342 (500)
T 2d5b_A 304 NVVDPFALLEK-YGRDALRYYLLREIP-YGQDTPVSEEALR 342 (500)
T ss_dssp CCCCHHHHHHH-HCHHHHHHHHHHHSC-TTSCEECCHHHHH
T ss_pred CCCCHHHHHHh-cCcHHHHHHHHhcCC-cccCCCCCHHHHH
Confidence 7 789999975 999999999998542 2222335555543
No 21
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.88 E-value=5e-22 Score=202.83 Aligned_cols=254 Identities=14% Similarity=0.181 Sum_probs=184.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCc-------------------------------------
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTD------------------------------------- 46 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d------------------------------------- 46 (340)
+|+|||+|||||+|++++++.++| +..|+-|.| |+|.+
T Consensus 151 spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~~~~~~ 230 (607)
T 1f7u_A 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVRINKD 230 (607)
T ss_dssp CCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHHHHHHHHH
Confidence 799999999999999999999999 688998888 55611
Q ss_pred -----------c-----c-------------------cchHHHHHHHHHHHHHcCCCCCCCCccccccH-HHHHHHHHHH
Q psy2377 47 -----------I-----N-------------------RSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI-NRYFEIINYL 90 (340)
Q Consensus 47 -----------~-----~-------------------r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~-~~y~~~~~~L 90 (340)
+ . ...+.+.+.+.++++.||+.+|.. ...|++. +.+.++++.|
T Consensus 231 ~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~-~~ES~~~~~~~~~vi~~L 309 (607)
T 1f7u_A 231 IEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVY-SGESQVSKESMLKAIDLF 309 (607)
T ss_dssp HHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEE-EEGGGCCHHHHHHHHHHH
T ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceee-cCcchhhhhHHHHHHHHH
Confidence 0 0 123456667788899999999752 3566666 7889999999
Q ss_pred HHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccceeeeecCC
Q psy2377 91 LSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNK 170 (340)
Q Consensus 91 ~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~~ 170 (340)
.++|.+|.. +| ++=++... | |+
T Consensus 310 ~~kG~~ye~-----------------------dG-------------------a~~~~~~~-----~-----g~------ 331 (607)
T 1f7u_A 310 KEKGLTHED-----------------------KG-------------------AVLIDLTK-----F-----NK------ 331 (607)
T ss_dssp HHTTCEEEE-----------------------TT-------------------EEEEEGGG-----T-----CT------
T ss_pred HhCCCEEEE-----------------------CC-------------------cEEEEecc-----c-----CC------
Confidence 999999851 01 11112110 0 11
Q ss_pred CCCCeEEEecCCCcchhh---HHHhhhh-cCCCcEEE--eCCCCCCcHHHHHHHHHHhCCCCC-ceEEecc-eecCCCce
Q psy2377 171 ELDDLVIVRADGIPTYNF---CAAIDDW-DMKITHVI--RGDDHINNTPRQINILKALGVTLP-FYGHLPM-VIDSNKVK 242 (340)
Q Consensus 171 ~~~DfVl~R~dG~ptY~l---a~vvDD~-~~githvI--rG~D~~~~t~~q~~l~~aLg~~~p-~~~H~pl-l~~~~g~K 242 (340)
..++.|+.|+||.|+|.. |.+++.. .++.+++| +|.||....++...+++++|++.+ .+.|+++ +++ |
T Consensus 332 ~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~----k 407 (607)
T 1f7u_A 332 KLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ----G 407 (607)
T ss_dssp TTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE----S
T ss_pred CCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc----c
Confidence 223589999999999976 4567776 46889885 999999999999999999999766 5999998 444 6
Q ss_pred ecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCC----CccccCHHH-----HHHhhcccCcCCCCCccccHHHHHHH
Q psy2377 243 ISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG----NEEIFSIKQ-----FCYWFNDCKYLSKSPAQFNLKKLEWL 312 (340)
Q Consensus 243 LSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~----~~~~~~~~~-----~~~~f~~~~~~~~~~~~~d~~kl~~~ 312 (340)
||||.|+ +++++|+++.. .++ .+ +.. . ++. ..++..+.+ ++.+|+ ++...+++..||++++.++
T Consensus 408 MSkR~G~~v~L~dLlde~~-~~a-~~-~~~-~-~~~~~~~~~e~~~~a~~vgi~avry~~-Ls~~~~s~~~Fd~d~~~~~ 481 (607)
T 1f7u_A 408 MSTRKGTVVFLDNILEETK-EKM-HE-VMK-K-NENKYAQIEHPEEVADLVGISAVMIQD-MQGKRINNYEFKWERMLSF 481 (607)
T ss_dssp CCGGGTCCCBHHHHHHHHH-HHH-HH-HHH-T-CHHHHTTCSCHHHHHHHHHHHHHHHHH-HSSCTTCCEECCHHHHHCC
T ss_pred ccCCCCCcccHHHHHHHHH-HHH-HH-HHH-h-CcccccchhhHHHHHHHHHHHHHHHHH-hccCCCCCcccCHHHHHHH
Confidence 9999996 68999998733 344 22 222 1 110 123333443 678899 9999999999999999988
Q ss_pred HH---HHhhcCCHHHHHHhHHHHHHhc
Q psy2377 313 NN---FYIKSYDDKKLLNLIQPIIKKK 336 (340)
Q Consensus 313 n~---~~i~~~~~~~~~~~~~~~~~~~ 336 (340)
++ -||+ +-..++...|.++
T Consensus 482 ~g~t~pylq-----Ya~aRi~SIlrka 503 (607)
T 1f7u_A 482 EGDTGPYLQ-----YAHSRLRSVERNA 503 (607)
T ss_dssp SSSSHHHHH-----HHHHHHHHHHHHT
T ss_pred hccchHHHH-----HHHHHHHHHHHHh
Confidence 76 3333 4557777777665
No 22
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.86 E-value=5.3e-21 Score=187.67 Aligned_cols=222 Identities=19% Similarity=0.168 Sum_probs=141.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCc---EEEEecCCccc-------------cchHHHHHHHHHHHHHcCCC-C
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGI---FILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLN-Y 69 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~---~vlRieD~d~~-------------r~~~~~~~~i~~~l~~lGi~-~ 69 (340)
.|+|+|++||||+|++++.|+++| +..|+ ++..++|.|++ ...+.+.+.+.+++++||+. +
T Consensus 46 gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~ 125 (414)
T 3c8z_A 46 GITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPP 125 (414)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 699999999999999999999999 45665 55668888854 23577888999999999998 7
Q ss_pred CCCCccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCC----CCCCCCCCCCCCCCCCCCCCCCCCceE
Q psy2377 70 DEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGE----KPRYNRIWRPEPGKILPSIPINRKPVI 145 (340)
Q Consensus 70 d~~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~----~~~Y~g~cr~~~~~~e~~~~~~~~~~~ 145 (340)
|. ..+.|++.+.+++++++|+++|.+|.+.++ ..+. ...|.. |-.+ + +..
T Consensus 126 d~-~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~------------~e~~~~f~~~~~~~-~g~l-~--------~~~--- 179 (414)
T 3c8z_A 126 HD-YVAATDAIAEVVEMVEKLLASGAAYIVEDA------------EYPDVYFRADATAQ-FGYE-S--------GYD--- 179 (414)
T ss_dssp SE-EEEGGGCHHHHHHHHHHHHHHTSEEECSCS------------SCCCEEECTTSSTT-TTTT-T--------CCC---
T ss_pred cc-eecccchHHHHHHHHHHHHHCCCEEeccCC------------cCCCEEEEchhhhh-hHhh-c--------CCC---
Confidence 75 346778999999999999999999987654 0010 001110 0011 0 000
Q ss_pred EEeCCCCCceeEEeccc------eee-eecCCCCCCeEEEec-------------CCCcchhhHHHh--hhhcCCCcEE-
Q psy2377 146 RFKNPLYGNITWNDLIK------GKI-TISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWDMKITHV- 202 (340)
Q Consensus 146 Rl~~~~~~~~~~~D~i~------G~~-~~~~~~~~DfVl~R~-------------dG~ptY~la~vv--DD~~~githv- 202 (340)
..+.+. |+. ...+....||++||. .|+|.||+.|+. .++. |.+..
T Consensus 180 -----------~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~-g~~~di 247 (414)
T 3c8z_A 180 -----------RDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRI-GTGLDI 247 (414)
T ss_dssp -----------HHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHT-CSCEEE
T ss_pred -----------HHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhc-CCCceE
Confidence 000000 111 112335578888883 257889998874 3444 33333
Q ss_pred -EeCCC----CCCcHHHHHHHHHHhCCCCC--ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 203 -IRGDD----HINNTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 203 -IrG~D----~~~~t~~q~~l~~aLg~~~p--~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+-|.| |+.+.+.|... +.|.+++ .+.|..++ +.+|+|||||.|+ +++.+++++|+.|+++|.||+.
T Consensus 248 ~~~G~D~~~~H~~~~~a~~~a--~~g~~~~~~~~~h~g~v-~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 248 QGGGSDLIFPHHEYSAAHAES--VTGERRFARHYVHTGMI-GWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp EEEEGGGTTTHHHHHHHHHHH--HHCCSCSEEEEEEECCB-C-------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred EEeccccccHHHHHHHHHHHH--hcCCCCcCeEEEEcCEE-ecCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 44999 45566666543 2387444 36666666 4489999999996 8999999999999999999997
No 23
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.4e-21 Score=186.12 Aligned_cols=195 Identities=13% Similarity=0.015 Sum_probs=141.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecC----Cccccch--------HHHHHHHHHHHHHcCCCCCC
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDINRST--------LSATQTIIDGMKWLGLNYDE 71 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD----~d~~r~~--------~~~~~~i~~~l~~lGi~~d~ 71 (340)
+.++|+| ||.|||||+++++.+|.+++ .++.++++|.| |+.++.. ..+...+...|.|+|++|+.
T Consensus 42 vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k 118 (394)
T 2dlc_X 42 LYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEK 118 (394)
T ss_dssp EEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred EEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 6789988 79999999999999999998 78899999999 6533211 12446677789999999986
Q ss_pred -CCccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2377 72 -GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (340)
Q Consensus 72 -~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~ 150 (340)
.+++||++.. +.+++..++ .|.|+||..+++... ... . |..
T Consensus 119 ~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~----------------~~~-~--------------r~~-- 160 (394)
T 2dlc_X 119 LKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAG----------------ADV-V--------------KQV-- 160 (394)
T ss_dssp CEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHT----------------TTT-S--------------CCC--
T ss_pred cEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhccc----------------Hhh-h--------------ccc--
Confidence 4789998642 233333333 689999998875421 000 0 000
Q ss_pred CCCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceE
Q psy2377 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230 (340)
Q Consensus 151 ~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~ 230 (340)
++ . +-|..+|.+--+.|...++++|+++|.|+..++..+..+++.+|++.|.+.
T Consensus 161 -~~----------------~---------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l 214 (394)
T 2dlc_X 161 -AN----------------P---------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHL 214 (394)
T ss_dssp -SS----------------C---------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEE
T ss_pred -CC----------------c---------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCCCCEEE
Confidence 00 0 236778888888888889999999999999999999999999999999999
Q ss_pred EecceecCC-CceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 231 HLPMVIDSN-KVKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 231 H~pll~~~~-g~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|+|+|.+.+ |+|||||.++ +.|. -+|+.++..+..
T Consensus 215 ~~pll~gl~~G~KMSKS~~ns~I~L~------D~p~~i~kKI~k 252 (394)
T 2dlc_X 215 MNPMVPGLAQGGKMSASDPNSKIDLL------EEPKQVKKKINS 252 (394)
T ss_dssp EECCCCCCC----------CCSCBTT------CCHHHHHHHHHH
T ss_pred ecccccCCCCCCcCCCCCCCCEEecc------CCHHHHHHHHHH
Confidence 999999999 9999999876 4444 368888888876
No 24
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.83 E-value=2.1e-20 Score=191.88 Aligned_cols=249 Identities=20% Similarity=0.180 Sum_probs=165.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc-----------------------------------
Q psy2377 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN----------------------------------- 48 (340)
Q Consensus 9 aPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~----------------------------------- 48 (340)
+|+|||+|||||+|++++++.++| +..|+-|.| |+|.+.+
T Consensus 127 spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 206 (629)
T 2zue_A 127 SVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHA 206 (629)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHH
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccCcchhh
Confidence 799999999999999999999999 678988887 6675211
Q ss_pred -------------------------------------cchHHHHHHHHHHHHHcCCCCCCCCcccccc--HHHHHHHHHH
Q psy2377 49 -------------------------------------RSTLSATQTIIDGMKWLGLNYDEGPFYQTKR--INRYFEIINY 89 (340)
Q Consensus 49 -------------------------------------r~~~~~~~~i~~~l~~lGi~~d~~~~~qS~~--~~~y~~~~~~ 89 (340)
..++.+.+.+.++++.||+.+|. ....|++ .+.+.+++++
T Consensus 207 ~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~-~~~es~~~~~~~v~~vi~~ 285 (629)
T 2zue_A 207 LGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDL-LVWESDIVRRKLFEIALEL 285 (629)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSE-EEEHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcccc-ccCcCccccchhHHHHHHH
Confidence 12345566778889999999985 3456665 6788999999
Q ss_pred HHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccceeeeecC
Q psy2377 90 LLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISN 169 (340)
Q Consensus 90 L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~~~~ 169 (340)
|.++|.+|.+. .| .|+|. .+ ++.... | ..
T Consensus 286 L~~kG~~y~~~---------------~g---e~~Ga-----------------~~--v~~~~~----------g----~~ 314 (629)
T 2zue_A 286 LSKNENFYIPS---------------DG---KYRGA-----------------FV--MDLRKL----------F----PD 314 (629)
T ss_dssp HHTSTTEECCS---------------SS---TTTTC-----------------EE--EECTTT----------C----SS
T ss_pred HHHCCCccccc---------------cC---CcCCc-----------------EE--EECccc----------C----Cc
Confidence 99999999641 01 12221 01 111110 1 01
Q ss_pred CCCCCeEEEecCCCcchhhHHH---hhh--------hcC---------------------CCcEE--EeCCCCCCcHHHH
Q psy2377 170 KELDDLVIVRADGIPTYNFCAA---IDD--------WDM---------------------KITHV--IRGDDHINNTPRQ 215 (340)
Q Consensus 170 ~~~~DfVl~R~dG~ptY~la~v---vDD--------~~~---------------------githv--IrG~D~~~~t~~q 215 (340)
...+..|+.|+||.++|...+. .++ ... +.+|+ |+|.||....++.
T Consensus 315 ~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~~~~l 394 (629)
T 2zue_A 315 MKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAI 394 (629)
T ss_dssp SSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHHHHHH
T ss_pred cccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhHHHHH
Confidence 1123489999999999987665 442 111 77787 7899998777777
Q ss_pred HHHHHHhCCCC-C-ceEEe--cceecCCCceecccCC--C-CChHHHHHcCCCHHHHHHHHHHhCCCCCCcc------cc
Q psy2377 216 INILKALGVTL-P-FYGHL--PMVIDSNKVKISKRKE--A-TDIMYYKKKGFLPEAILNYLARLGWSHGNEE------IF 282 (340)
Q Consensus 216 ~~l~~aLg~~~-p-~~~H~--pll~~~~g~KLSKR~g--~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~------~~ 282 (340)
...++++|++. + .+.|+ .++ +.+|.|||||.| + +++++|++++. +..+..+...+-..+..+ .+
T Consensus 395 ~~~l~~lG~~~~~~~~~h~~~g~V-~~~~~KMSkr~G~~n~v~l~dLl~e~~--~~a~~~~~~~~~~~~~~~~~~~a~~v 471 (629)
T 2zue_A 395 KYALQLLGFEDAAANLYHLAYEHV-ERPEGKFSGRKGTWVGFTVDEVIQEAV--KRARELIEEKNPALSDEEKAEVAEKV 471 (629)
T ss_dssp HHHHHHTTCHHHHHTEEEEEECCE-EBTTBCCCTTTTTTTTCBHHHHHHHHH--HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEEEeeeE-EcCCCcccCCCCCCCeeeHHHHHHHHH--HHHHHHHHhcCcccchhhHHHHHHhc
Confidence 78889999976 3 57888 455 457889999999 6 78999997521 222222222221000000 01
Q ss_pred CHHHHHHhhcccCcCCCCCccccHHHHHHHHH
Q psy2377 283 SIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNN 314 (340)
Q Consensus 283 ~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~ 314 (340)
.+ +.+.+|. ++.-+.++..||++++...++
T Consensus 472 g~-~AvRy~~-L~~~~~~~~~Fd~d~~~~~~~ 501 (629)
T 2zue_A 472 GI-GAIRYNL-IKYSPDKKIIFRWEDVLNFEG 501 (629)
T ss_dssp HH-HHHHHHH-HSSCTTSCEECCHHHHSCCSS
T ss_pred Ch-hHhhHHH-HhcCCCCCCeecHHHHHHHhc
Confidence 12 4566677 777777788888888775544
No 25
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.81 E-value=4e-20 Score=187.08 Aligned_cols=275 Identities=16% Similarity=0.126 Sum_probs=148.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCcc-------------ccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDI-------------NRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~-------------~r~~~~~~~~i~~~l~~l 65 (340)
+++.-.|+|||++||||+|+++++|+++| +..|+-|.. ++|.+. ....+.+.+.+.++|++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 67888899999999999999999999999 567875544 666553 345678899999999999
Q ss_pred CCCCCCCCccccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCCCCC
Q psy2377 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNR-IWRPEPGKILPSI 137 (340)
Q Consensus 66 Gi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~~~~~~~~~~~~~~~Y~g-~cr~~~~~~e~~~ 137 (340)
|+.+|. .++.++ +.+.+++++++|.++|.+|.+ +|...+-.- .+.....+. +| .|..--++-+.
T Consensus 108 gi~~d~-~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~~~~~~----~g~~c~~~g~~~e~-- 179 (536)
T 4dlp_A 108 NSSNDD-YIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYY-GEEETEVRA----DGVRYGPQGTPVEW-- 179 (536)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGCEECT----TSCEECTTSSBCEE--
T ss_pred CCCCCc-ceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCccc-CHHHhhcCC----CCCcccCCCCcceE--
Confidence 999995 334444 889999999999999999964 454332100 000000000 12 12110000000
Q ss_pred CCCCCceEEEeCCCCCceeEEeccceeee----------ecCCCCCCeEEEecC-------------CCcchhhHHH---
Q psy2377 138 PINRKPVIRFKNPLYGNITWNDLIKGKIT----------ISNKELDDLVIVRAD-------------GIPTYNFCAA--- 191 (340)
Q Consensus 138 ~~~~~~~~Rl~~~~~~~~~~~D~i~G~~~----------~~~~~~~DfVl~R~d-------------G~ptY~la~v--- 191 (340)
.......+|+....+....+.+.....+. +-...+.|++|-|++ ...+|.=|.+
T Consensus 180 ~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~ 259 (536)
T 4dlp_A 180 VEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYI 259 (536)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHH
T ss_pred EeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHH
Confidence 00001111211100000000000000000 001357999999973 1223321111
Q ss_pred --h------hhhcC--CCcEEEeCCCCCCc-HHHHHHHHHHhCCCCCc-eEEecceecCCCceecccCCC-CChHHHHHc
Q psy2377 192 --I------DDWDM--KITHVIRGDDHINN-TPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKK 258 (340)
Q Consensus 192 --v------DD~~~--githvIrG~D~~~~-t~~q~~l~~aLg~~~p~-~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~ 258 (340)
+ ++... ..+..+-|.|++.. +..+.+++.++|.++|. ...+.++. .+|+|||||.|+ +++.++++.
T Consensus 260 s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~-~~G~KMSKS~GNvi~p~d~i~~ 338 (536)
T 4dlp_A 260 TALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVER 338 (536)
T ss_dssp HTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEE-C------------CCHHHHHHH
T ss_pred HhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEe-eCCceecccCCCCCCHHHHHHH
Confidence 0 01111 12333559999751 22344566788998874 33336664 499999999996 789999986
Q ss_pred CCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2377 259 GFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (340)
Q Consensus 259 G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~ 289 (340)
+.++++|.||+..+ +......++.+.+++
T Consensus 339 -~GaDalR~~ll~~~-~~~~d~~fs~~~~~~ 367 (536)
T 4dlp_A 339 -YGLDQLRYFLMREV-PFGQDGSYSHEAIVN 367 (536)
T ss_dssp -HCHHHHHHHHHHHS-CTTSCEECCHHHHHH
T ss_pred -cCcHHHHHHHHhcC-CCCCCCCCCHHHHHH
Confidence 99999999999853 222233466666544
No 26
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.78 E-value=9.1e-18 Score=170.62 Aligned_cols=275 Identities=15% Similarity=0.162 Sum_probs=158.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCc-------------cccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTD-------------INRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d-------------~~r~~~~~~~~i~~~l~~l 65 (340)
+++--.|+|||++||||+|++++.|+++| +..|+-|+. ++|.+ +....+.+.+.+.++|++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 56777899999999999999999999999 578887766 44333 3456788899999999999
Q ss_pred CCCCCCCCcccc-ccHHHHHHHHHHHHHcCCccc-----ccCCHHH--HHHHHHHHHhcCCCCC------CCCCC---CC
Q psy2377 66 GLNYDEGPFYQT-KRINRYFEIINYLLSNDYAYY-----CYSSVEE--IESFRKKQRSFGEKPR------YNRIW---RP 128 (340)
Q Consensus 66 Gi~~d~~~~~qS-~~~~~y~~~~~~L~~~G~aY~-----c~cs~~~--l~~~~~~~~~~~~~~~------Y~g~c---r~ 128 (340)
|+.+|......+ ++.+..+++.++|.++|.+|. -+|...+ +.. + .-.|.-|. |-..| ..
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~-~---~v~g~cp~c~~~~~~gd~ce~cg~ 176 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPD-R---FVKGTCPKCKSPDQYGDNCEVCGA 176 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCG-G---GEEEECTTTCCSSEETTBCTTTCC
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecc-h---hcCCCCCCCCCcccccchhhhccc
Confidence 999986322222 466777889999999999983 1222111 100 0 00011111 11112 11
Q ss_pred CCCCCCCC----CCCCCCceEEEeCCCCCceeEE-----eccc-----eeee---------ecCCCCCCeEEEecC---C
Q psy2377 129 EPGKILPS----IPINRKPVIRFKNPLYGNITWN-----DLIK-----GKIT---------ISNKELDDLVIVRAD---G 182 (340)
Q Consensus 129 ~~~~~e~~----~~~~~~~~~Rl~~~~~~~~~~~-----D~i~-----G~~~---------~~~~~~~DfVl~R~d---G 182 (340)
...+.+.. ...|....+|.. ....|+ |.+. +.+. +-...+.|+.|-|.. |
T Consensus 177 ~~~~~~l~~~~~~~~g~~~~~~~~----~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG 252 (560)
T 3h99_A 177 TYSPTELIEPKSVVSGATPVMRDS----EHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFG 252 (560)
T ss_dssp BCCGGGCEEEEETTTCCCCEEEEE----EEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSS
T ss_pred cCChhhhcCCccccCCCCceEEec----ceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCC
Confidence 00111100 011222222211 011111 1000 0000 001257999999987 5
Q ss_pred Cc----------chhhHHH-----h------------------hhhcCCCcEEEeCCCCCC-cHHHHHHHHHHhCCCCCc
Q psy2377 183 IP----------TYNFCAA-----I------------------DDWDMKITHVIRGDDHIN-NTPRQINILKALGVTLPF 228 (340)
Q Consensus 183 ~p----------tY~la~v-----v------------------DD~~~githvIrG~D~~~-~t~~q~~l~~aLg~~~p~ 228 (340)
.| +|.-|.+ + .|....+.|++ |.|++. .+....+++.++|++.|.
T Consensus 253 ~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~ 331 (560)
T 3h99_A 253 FEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPS 331 (560)
T ss_dssp CBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCS
T ss_pred eeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCc
Confidence 42 2221111 1 11112234665 999975 233444677889998883
Q ss_pred -eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2377 229 -YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (340)
Q Consensus 229 -~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~ 289 (340)
...+.++.. +|+|||||.|+ +++.+++++ +.++++|.||+..+-.....-.++.+.+++
T Consensus 332 ~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 332 NLFVHGYVTV-NGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQ 392 (560)
T ss_dssp EEEEECCEEE-TTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHH
T ss_pred EEEEEeEEEe-CCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 222345444 89999999997 899999988 999999999998653221222356666553
No 27
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.78 E-value=2.9e-18 Score=162.89 Aligned_cols=196 Identities=13% Similarity=0.126 Sum_probs=152.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecC-------CccccchHHHHHHHHHHHHHcCCCCCCC-Ccc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED-------TDINRSTLSATQTIIDGMKWLGLNYDEG-PFY 75 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD-------~d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~ 75 (340)
+.+-| .|||.|||||+ .++.+|...+..|+..++.|-| .+++..++++.+.+.++|.++|++|+.. +++
T Consensus 35 vy~G~--~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~ 111 (323)
T 2cyb_A 35 AYVGY--EPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVL 111 (323)
T ss_dssp EEEEE--CCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEE
T ss_pred EEECc--CCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 44556 47799999997 7899999999888888887654 4456788999999999999999999863 689
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCce
Q psy2377 76 QTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNI 155 (340)
Q Consensus 76 qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~ 155 (340)
||+.... .+ +.+....+.|.||..++.... .+.+ . . .
T Consensus 112 qS~~~~~-~~----~~~~~~~l~~~~t~~~l~~~~----------~~~~----~-~-----------------~------ 148 (323)
T 2cyb_A 112 GSEYQLS-RD----YVLDVLKMARITTLNRARRSM----------DEVS----R-R-----------------K------ 148 (323)
T ss_dssp GGGTTTS-HH----HHHHHHHHHHHSBHHHHHHHT----------TTTC----S-C-----------------S------
T ss_pred cchhccc-hH----HHHHHHHHhCccCHHHHhccc----------hhhc----c-c-----------------c------
Confidence 9986522 12 222334578999999885431 1100 0 0 0
Q ss_pred eEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecce
Q psy2377 156 TWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMV 235 (340)
Q Consensus 156 ~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll 235 (340)
++ + +.|..+|.+..+.|....++++|++|.|...++..+..+.+.+|.+.|...|+|++
T Consensus 149 -----------------~~-~---~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll 207 (323)
T 2cyb_A 149 -----------------ED-P---MVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPIL 207 (323)
T ss_dssp -----------------SS-C---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCC
T ss_pred -----------------CC-C---CchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCcc
Confidence 00 0 34778999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 236 IDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 236 ~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
.+.+|+|||||.++ +.+. -+|++++..+...
T Consensus 208 ~~l~G~KMSKS~~n~I~l~------d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 208 VGLDGQKMSSSKGNYISVR------DPPEEVERKIRKA 239 (323)
T ss_dssp BCTTSSBCCTTTTCSCBTT------CCHHHHHHHHHTS
T ss_pred cCCCCCcccCCcCceeCCC------CCHHHHHHHHHhc
Confidence 99999999999764 5565 3699999998863
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.75 E-value=2.4e-17 Score=159.22 Aligned_cols=195 Identities=16% Similarity=0.051 Sum_probs=139.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecC----Cccc-------cchHHHHHH-HHHHHHHcCCCCCC
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN-------RSTLSATQT-IIDGMKWLGLNYDE 71 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD----~d~~-------r~~~~~~~~-i~~~l~~lGi~~d~ 71 (340)
+.++|. |||.|||||+.+++.+|.+.+ .++..++.|.| |+.+ +....+.+. +...|.|+|++|++
T Consensus 38 vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k 114 (372)
T 1n3l_A 38 IYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEK 114 (372)
T ss_dssp EEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred EEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 678888 679999999999999999887 68889999998 6532 234445555 44557999999986
Q ss_pred -CCccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2377 72 -GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (340)
Q Consensus 72 -~~~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~ 150 (340)
.+++||+.. .+.+++..++. |.|+||..+++.. . ... .|...
T Consensus 115 ~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~-------~---------~~v---------------~~~~~- 157 (372)
T 1n3l_A 115 LKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKA-------G---------AEV---------------VKQVE- 157 (372)
T ss_dssp EEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHH-------T---------TTT---------------SCCCS-
T ss_pred cEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhc-------h---------hhh---------------hcccC-
Confidence 478999873 23344444443 7788998876531 0 000 00000
Q ss_pred CCCceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceE
Q psy2377 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230 (340)
Q Consensus 151 ~~~~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~ 230 (340)
+ + +-|..+|.+--+.|-...+.+||++|.|+..+...++.+++.+|+..|...
T Consensus 158 --~-----------~--------------~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l 210 (372)
T 1n3l_A 158 --H-----------P--------------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHL 210 (372)
T ss_dssp --S-----------C--------------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEE
T ss_pred --C-----------C--------------cceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEEE
Confidence 0 0 125567777777776778999999999999999999999999999999999
Q ss_pred EecceecCCCceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 231 HLPMVIDSNKVKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 231 H~pll~~~~g~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|.|+|.+.+|+|||||.++ +.|. -+|+.++..+..
T Consensus 211 ~~pll~gldG~KMSKS~~ns~I~L~------d~p~~i~kKi~~ 247 (372)
T 1n3l_A 211 MNPMVPGLTGSKMSSSEEESKIDLL------DRKEDVKKKLKK 247 (372)
T ss_dssp EECCCCCSSCC-------CCSCBTT------CCHHHHHHHHHT
T ss_pred ecCccCCCCcccccCCCCCCeEecc------CCHHHHHHHHHH
Confidence 9999999999999999876 4554 358999998875
No 29
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.73 E-value=2.3e-18 Score=175.14 Aligned_cols=266 Identities=17% Similarity=0.099 Sum_probs=155.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCcc-------------ccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDI-------------NRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~-------------~r~~~~~~~~i~~~l~~l 65 (340)
+++--.|+|||++||||+|++++.|++|| +..|.-|+. ++|.+. ....+.+.+.+.+++++|
T Consensus 29 ~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~l 108 (564)
T 3kfl_A 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM 108 (564)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 57777899999999999999999999999 556765554 666653 234678889999999999
Q ss_pred CCCCCCCCcccc--ccHHHHHHHHHHHHHcCCcccc-----cCCHHHHH-HHHHHHHhcCCCCCCCCCC----CCCCCCC
Q psy2377 66 GLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYYC-----YSSVEEIE-SFRKKQRSFGEKPRYNRIW----RPEPGKI 133 (340)
Q Consensus 66 Gi~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~-~~~~~~~~~~~~~~Y~g~c----r~~~~~~ 133 (340)
|+.+|.. ++.+ ++.+..+++.++|.++|.+|.. +|...+-. ..++ ...+ .+.+.+.| +.-.+++
T Consensus 109 gi~~D~~-~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~--~~~~-~~~~g~~c~~~~~~g~~~~ 184 (564)
T 3kfl_A 109 NYDMNYF-IRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQN--VADG-VDRDGKPCKVSLESGHVVT 184 (564)
T ss_dssp TCCCSEE-EETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGG--EEEE-ECTTSCEEEEETTTSCBCE
T ss_pred CCCCCcc-ccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHH--hccC-cCCCCCEeccccCCCCccE
Confidence 9999853 3344 4889999999999999999963 44433200 0000 0000 00011222 1110110
Q ss_pred CCCCCCCCCceEEEeCCCCCceeEEeccc----e---eee----------ecCCCCCCeEEEe---cC---C--------
Q psy2377 134 LPSIPINRKPVIRFKNPLYGNITWNDLIK----G---KIT----------ISNKELDDLVIVR---AD---G-------- 182 (340)
Q Consensus 134 e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~----G---~~~----------~~~~~~~DfVl~R---~d---G-------- 182 (340)
. ....... |+.+. +.|.+. . .+. +-...+.|++|-| ++ |
T Consensus 185 ~---~~~~~~f--~~l~~-----~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~ 254 (564)
T 3kfl_A 185 W---VEEENYM--FRLSA-----FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDER 254 (564)
T ss_dssp E---EEEEEEE--ECGGG-----GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEE
T ss_pred E---EecceeE--EEHHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCC
Confidence 0 0000111 11110 111100 0 000 0012578999999 22 2
Q ss_pred ---------CcchhhHHHh--hh---------h--cC--CCcEEEeCCCCCCcHHHHH----HHHHHhCCCCCce-EEec
Q psy2377 183 ---------IPTYNFCAAI--DD---------W--DM--KITHVIRGDDHINNTPRQI----NILKALGVTLPFY-GHLP 233 (340)
Q Consensus 183 ---------~ptY~la~vv--DD---------~--~~--githvIrG~D~~~~t~~q~----~l~~aLg~~~p~~-~H~p 233 (340)
..+|.-+.-- ++ + .. ..+..+-|.|++. .|. +++.++|.++|.- ..+.
T Consensus 255 ~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~---FH~~~wpa~L~a~g~~~~~~v~~hg 331 (564)
T 3kfl_A 255 HCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK---FHAIYWPAFLMSAELPLPERLVSHG 331 (564)
T ss_dssp EEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHH---HHHTHHHHHHHHTTCCCCSCEEEEC
T ss_pred CEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccc---hHHHHHHHHHHhCCCCCCcEEEEcc
Confidence 1233222111 11 1 11 1122345999864 332 3457789988843 3334
Q ss_pred ceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2377 234 MVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (340)
Q Consensus 234 ll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~ 289 (340)
++ +.+|+|||||.|+ +++.++++. +.++++|.||+..+- ....-.++.+.+.+
T Consensus 332 ~v-~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~~-~~~D~~fs~~~~~~ 385 (564)
T 3kfl_A 332 WW-TKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRESN-FQDDGDYSDKNMVA 385 (564)
T ss_dssp CE-EETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCC-SSCCEECCHHHHHH
T ss_pred cE-eeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcCC-cccCCCCCHHHHHH
Confidence 54 7799999999996 789999986 899999999998531 22233366666654
No 30
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.73 E-value=1.1e-17 Score=168.67 Aligned_cols=245 Identities=19% Similarity=0.172 Sum_probs=152.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------cccchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~~r~~~~~~~~i~~~l~~lG 66 (340)
++=-.|+|||++||||+|++++.|+++| ...|+.|+++.++| +....+.+.+.+.+++++||
T Consensus 16 i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lg 95 (524)
T 2x1l_A 16 ITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLN 95 (524)
T ss_dssp EEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3445699999999999999999999999 57999999877776 22345678899999999999
Q ss_pred CCCCCCCccccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHH-HHHHHHHhcCCCCCCCC-CCCCCCCCCCCCC
Q psy2377 67 LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIE-SFRKKQRSFGEKPRYNR-IWRPEPGKILPSI 137 (340)
Q Consensus 67 i~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~c-----~cs~~~l~-~~~~~~~~~~~~~~Y~g-~cr~~~~~~e~~~ 137 (340)
+.+|. .++.++ +.+.++++.++|.++|.+|.. +|.+.+-. ...+ ...|. +| .|.-+
T Consensus 96 i~~d~-~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~e--v~~g~----~G~~c~~~-------- 160 (524)
T 2x1l_A 96 ISFDR-FIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENE--TTEQP----DGTRIATE-------- 160 (524)
T ss_dssp CCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGG--EEECT----TSCEEETT--------
T ss_pred CcCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHH--hccCC----CCCccccc--------
Confidence 99985 456777 899999999999999999953 45432100 0000 00000 01 12101
Q ss_pred CCCCCceEEEeCCCCCceeEE-----ec----cc-ee--ee----------ecCCCCCCeEEEec---CCCc--------
Q psy2377 138 PINRKPVIRFKNPLYGNITWN-----DL----IK-GK--IT----------ISNKELDDLVIVRA---DGIP-------- 184 (340)
Q Consensus 138 ~~~~~~~~Rl~~~~~~~~~~~-----D~----i~-G~--~~----------~~~~~~~DfVl~R~---dG~p-------- 184 (340)
.|.+ ++....+ ...++ +. +. |. +. +-...+.|+.|.|. -|.|
T Consensus 161 -~g~~-v~~~~~~---qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~ 235 (524)
T 2x1l_A 161 -TGAP-VTWTEEQ---TYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHV 235 (524)
T ss_dssp -TCCB-EEEEEEE---EEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEE
T ss_pred -cCCc-ceEEecC---CeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCE
Confidence 1111 1111110 01111 10 11 11 00 11235789999986 3542
Q ss_pred chhhHHH-h-----------h--h--hcCCCcEEEeCCCCCCcHHHHH---HHHHHhCCCCC-ceEEecceecCCCceec
Q psy2377 185 TYNFCAA-I-----------D--D--WDMKITHVIRGDDHINNTPRQI---NILKALGVTLP-FYGHLPMVIDSNKVKIS 244 (340)
Q Consensus 185 tY~la~v-v-----------D--D--~~~githvIrG~D~~~~t~~q~---~l~~aLg~~~p-~~~H~pll~~~~g~KLS 244 (340)
.|-.-.+ + + + ..-+++..+-|.|++- +.+. +.+.++|.++| .+.++.++.. +|+|||
T Consensus 236 ~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G~KMS 312 (524)
T 2x1l_A 236 MYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RGEKMS 312 (524)
T ss_dssp ECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEE-CSCSEE
T ss_pred EEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEe-CCcccC
Confidence 1211011 0 0 0 0124565577999962 3222 23456798877 3445577765 899999
Q ss_pred ccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 245 KRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 245 KR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
||.|+ +++.++++. +.++++|.|++..+
T Consensus 313 KS~GN~v~p~d~i~~-~g~DalR~~ll~~~ 341 (524)
T 2x1l_A 313 KSIGNVVDPVNLVDT-FGLDQVRYFLLREV 341 (524)
T ss_dssp TTTEESSCHHHHHHH-HCHHHHHHHHHHHS
T ss_pred CcCCCCCCHHHHHHH-cChHHHHHHHHhcC
Confidence 99996 899999986 99999999999854
No 31
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.53 E-value=2.7e-13 Score=141.39 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=77.8
Q ss_pred CCc-eEEEeCCCCCCcCchhHHHH-HHHHHHHHH--HcCCcEEEE---ecCCc-------------cccchHHHHHHHHH
Q psy2377 1 MTI-VRTRFAPSPTGNLHIGGIRT-ALFSWAYAR--HFNGIFILR---IEDTD-------------INRSTLSATQTIID 60 (340)
Q Consensus 1 m~~-~~~RfaPsPtG~LHiG~~rt-al~~~~~ar--~~~G~~vlR---ieD~d-------------~~r~~~~~~~~i~~ 60 (340)
|++ ++|=-.|+|||.+||||+++ +++.|+++| ...|+-|+. .|+.+ +....+.+.+.+.+
T Consensus 1 m~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 533 57777899999999999998 999999999 568887666 44443 33456888999999
Q ss_pred HHHHcCCCCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 61 GMKWLGLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 61 ~l~~lGi~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
++++||+.+|. .++.++ +.+..+++..+|.++|++|.
T Consensus 81 ~~~~lgis~D~-~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 81 TFQRAKISFDF-FGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HHHHHTCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhCCCCCC-CeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99999999986 344443 77888999999999999985
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.50 E-value=1.5e-13 Score=138.92 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=76.5
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCcc----------------ccchHHHHHHHHHHHHHc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDI----------------NRSTLSATQTIIDGMKWL 65 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~----------------~r~~~~~~~~i~~~l~~l 65 (340)
++|==.|+|||.+||||++++++.|+++| ...|+-|+-+-++|. ....+++.+.+.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555699999999999999999999999 568988877766663 234688889999999999
Q ss_pred CCCCCCCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 66 GLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 66 Gi~~d~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
|+.+|-. ++.+ ++.+..+++..+|.++|.+|.
T Consensus 92 gi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYF-IRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEE-EETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcC-ccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 9999852 3333 467788889999999999985
No 33
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.46 E-value=4e-12 Score=121.17 Aligned_cols=234 Identities=18% Similarity=0.228 Sum_probs=155.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecC----Cc---cccchHHHHHHHHHHHHHcCCCCCCC-Cccc
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TD---INRSTLSATQTIIDGMKWLGLNYDEG-PFYQ 76 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD----~d---~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~q 76 (340)
++.....|||.|||||+..++.+|...+..|...++.|.| |+ ++....+.+.+...++.++|++++.. .+.|
T Consensus 14 ~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~if~q 93 (340)
T 2g36_A 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVIFVQ 93 (340)
T ss_dssp EEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred eEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 4555567889999999999999999888887777777877 42 44567888888899999999999743 6789
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCcee
Q psy2377 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNIT 156 (340)
Q Consensus 77 S~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~ 156 (340)
|+..+ +.+.+ +.+.|.++-.+++.... |-. .. .|++..
T Consensus 94 S~~~~-~~el~-------~~l~~~~~v~~l~r~~~----------~k~---~~---------------~r~~~~------ 131 (340)
T 2g36_A 94 SGVKE-HAELA-------LLFSMIVSVSRLERVPT----------YKE---IK---------------SELNYK------ 131 (340)
T ss_dssp GGCTH-HHHHH-------HHHHTTSCHHHHHTCHH----------HHT---C----------------------------
T ss_pred CchHH-HHHHH-------HHHHccCCHHHHHHhHH----------HHh---HH---------------HHhccC------
Confidence 98654 33332 34678888887753211 100 00 011100
Q ss_pred EEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCc--
Q psy2377 157 WNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPF-- 228 (340)
Q Consensus 157 ~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~-- 228 (340)
| .. +-|..+|-+--+.|=...+.++|+.|.|...+......+.+.++ ++.|.
T Consensus 132 --~---------~~---------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 191 (340)
T 2g36_A 132 --D---------LS---------TAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAI 191 (340)
T ss_dssp --C---------CC---------SHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEE
T ss_pred --C---------CC---------ChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhh
Confidence 0 00 12445665555555556799999999999999888888888764 34564
Q ss_pred eEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCC---------CccccCHHHHHHhhcccCcCC
Q psy2377 229 YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG---------NEEIFSIKQFCYWFNDCKYLS 298 (340)
Q Consensus 229 ~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~---------~~~~~~~~~~~~~f~~~~~~~ 298 (340)
..|.|+|.+-+|+||||+.++ +.|.+ +|+.+...+... .+.+ +.+..++-++++.|. .
T Consensus 192 ~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~a-~td~~~~~~~~~~~p~~~~v~~~~~~f~-~---- 259 (340)
T 2g36_A 192 LSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILRM-MTDPARVRRSDPGNPENCPVWKYHQAFD-I---- 259 (340)
T ss_dssp ECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHTC-CCCTTCSSTTSCCCGGGCHHHHHHHHTT-C----
T ss_pred hccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHhC-CCCcccccccCCCCCchhHHHHHHHHHC-C----
Confidence 557899999999999999875 55553 799999998763 2221 123334445555554 1
Q ss_pred CCCccccHHHHHHHHHHHhh
Q psy2377 299 KSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 299 ~~~~~~d~~kl~~~n~~~i~ 318 (340)
+.+++..+-.+|-.
T Consensus 260 ------~~~~ieel~~~~~~ 273 (340)
T 2g36_A 260 ------SEEESKWVWEGCTT 273 (340)
T ss_dssp ------CHHHHHHHHHHHHT
T ss_pred ------CHhHHHHHHHHHhc
Confidence 45555666666654
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.37 E-value=5.1e-12 Score=121.57 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=140.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCC----cc-----ccchHHHHHHHHHHHHHcCCCCCCC-C
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT----DI-----NRSTLSATQTIIDGMKWLGLNYDEG-P 73 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~----d~-----~r~~~~~~~~i~~~l~~lGi~~d~~-~ 73 (340)
+.+-|.| ||.||||| ..++.+|...+..|...++.|.|. ++ ...+.+....+..++.++|++++.. .
T Consensus 38 iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i 114 (364)
T 2cya_A 38 GYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRF 114 (364)
T ss_dssp EEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEE
T ss_pred EEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4566765 69999999 999999999998888888877762 22 2367777888899999999999753 6
Q ss_pred ccccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q psy2377 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYG 153 (340)
Q Consensus 74 ~~qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~ 153 (340)
+.||+.... ..+...++ .+.|.+|..++... ..|-+ |.... .+
T Consensus 115 ~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~----------~~~k~---------------------r~~~~-~~ 157 (364)
T 2cya_A 115 VDAEELASD-KDYWGLVI----RVAKRASLARVRRA----------LTIMG---------------------RRAEE-AE 157 (364)
T ss_dssp EEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTT----------C---------------------------CCG-GG
T ss_pred Eecchhhcc-hHHHHHHH----HHHCcCcHHHHHcC----------chhhh---------------------hhcCC-CC
Confidence 789975432 23333333 35678887776432 11100 11000 00
Q ss_pred ceeEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEec
Q psy2377 154 NITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLP 233 (340)
Q Consensus 154 ~~~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~p 233 (340)
+ +-|..+|.+--+.|=...++++++.|.|...+......+.+.+|.+.|...|.|
T Consensus 158 -----------i--------------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ 212 (364)
T 2cya_A 158 -----------V--------------DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTP 212 (364)
T ss_dssp -----------S--------------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEEC
T ss_pred -----------c--------------cchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeeccc
Confidence 0 235667776666666678999999999999999999999999999999999999
Q ss_pred ceecCC-----------------CceecccC--CCCChHHHHHcCCCHHHHHHHHHH
Q psy2377 234 MVIDSN-----------------KVKISKRK--EATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 234 ll~~~~-----------------g~KLSKR~--g~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+|.+-+ |+||||+. +++.|.+ +|+.+...+..
T Consensus 213 ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d------~p~~i~~Ki~~ 263 (364)
T 2cya_A 213 IISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD------SDDDIRRKIRK 263 (364)
T ss_dssp CCBCSSCC----------------CBCCSSSGGGSCBTTC------CHHHHHHHHHT
T ss_pred eeeCCCcccccccccccccccccccccCCCCCCCEeeccC------CHHHHHHHHHh
Confidence 999988 79999994 3566653 58889888875
No 35
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.33 E-value=6.2e-11 Score=112.85 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=131.6
Q ss_pred CCCcCchhHHHHHHHHHHHHHHcC-CcEEEEecCC----cc----ccchHHHHHHHHHHHHHcCCCCCC-CCccccccHH
Q psy2377 12 PTGNLHIGGIRTALFSWAYARHFN-GIFILRIEDT----DI----NRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRIN 81 (340)
Q Consensus 12 PtG~LHiG~~rtal~~~~~ar~~~-G~~vlRieD~----d~----~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~ 81 (340)
|||.|||||+..++.+|+..+..| ...++.|-|. ++ +..+.+.+..+..++.++|++++. ..+.||+..+
T Consensus 10 PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~ 89 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPE 89 (337)
T ss_dssp SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTH
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchh
Confidence 679999999999999998777776 5666666652 11 246777888888999999999974 3688998654
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
+.+.+. .+.|.++-.+++..-.... . ++.. ++
T Consensus 90 -~~el~~-------~l~~~~~~~~l~r~~~~k~--------------r-----------------~~~~-~~-------- 121 (337)
T 2el7_A 90 -HTELSW-------VFTTLTPLGDLTRMTQFKD--------------K-----------------ASKQ-ET-------- 121 (337)
T ss_dssp -HHHHHH-------HHHHTSBHHHHHTSHHHHH--------------H-----------------TTSS-SC--------
T ss_pred -hHHHHH-------HHHccCCHHHHHHhHHHHH--------------H-----------------hccC-CC--------
Confidence 333332 3568888777653211000 0 0000 00
Q ss_pred ceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHh----C--CCCCceEEe---
Q psy2377 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL----G--VTLPFYGHL--- 232 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aL----g--~~~p~~~H~--- 232 (340)
+ +-|..+|-+--+.|=...+.++|+.|.|...+......+.+.+ | +..|...|.
T Consensus 122 ---~--------------~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~ 184 (337)
T 2el7_A 122 ---V--------------WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEA 184 (337)
T ss_dssp ---C--------------BHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTS
T ss_pred ---C--------------ChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeeccccc
Confidence 0 1144566555555555679999999999999998888887765 5 677887777
Q ss_pred cceecCCC-ceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 233 PMVIDSNK-VKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 233 pll~~~~g-~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|+|.+.+| +||||+.++ +.|. -+|+.+...+..
T Consensus 185 p~l~gldG~~KMSKS~~n~I~L~------d~p~~i~~Ki~~ 219 (337)
T 2el7_A 185 PRVPGIDGKAKMSKSLGNTIGLL------EPEESIWQKIQH 219 (337)
T ss_dssp CCCBCTTSSSBCCTTTTCCCBSS------SCHHHHHHHHHT
T ss_pred ccccCCCCccccCCCCCCeeeCc------CCHHHHHHHHHh
Confidence 89999999 999999886 4444 258888888875
No 36
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.30 E-value=2.8e-11 Score=115.83 Aligned_cols=198 Identities=16% Similarity=0.150 Sum_probs=134.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCC------ccccchHHHHHHHHHHHHHcCCCCCC-CCccc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT------DINRSTLSATQTIIDGMKWLGLNYDE-GPFYQ 76 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~------d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~q 76 (340)
+.+.|.| ||.|||||+.+++.+|...+.....+++..+.+ .++..+.+....+..++.++|++++. ..+.|
T Consensus 25 vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~q 102 (351)
T 1yi8_B 25 VLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQ 102 (351)
T ss_dssp EEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEEEG
T ss_pred EEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEEc
Confidence 5677776 699999999999999987665555566654422 22356788888889999999999974 36789
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCcee
Q psy2377 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNIT 156 (340)
Q Consensus 77 S~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~ 156 (340)
|+..+ +.+. .+.|.|.++-.++...-....... .. ++ . ++
T Consensus 103 S~~~~-~~el-------~~~l~~~~~v~~l~r~~~~k~~~~---~~-~f-------~------------------~~--- 142 (351)
T 1yi8_B 103 SAVPE-LAEL-------TVYFLNLVTVSHLRQNPTVKAEIA---QK-GY-------G------------------ER--- 142 (351)
T ss_dssp GGCTH-HHHH-------HHHHHTTSBHHHHHTCHHHHHHHH---HH-TC-------T------------------TC---
T ss_pred Cchhh-HHHH-------HHHHhccCCHHHHHhhhHHHHHHh---hc-CC-------C------------------CC---
Confidence 98654 3332 235678888887753211000000 00 00 0 00
Q ss_pred EEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHh----C--CCCCc--
Q psy2377 157 WNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL----G--VTLPF-- 228 (340)
Q Consensus 157 ~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aL----g--~~~p~-- 228 (340)
+ +-|..+|.+--+.|=...+.++|+.|.|...+......+.+.+ | ++.|.
T Consensus 143 --------~--------------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 143 --------V--------------PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp --------C--------------BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred --------C--------------chHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 0 1244566655555555578999999999999998888887765 4 45665
Q ss_pred eEEecceecCCCc-eecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 229 YGHLPMVIDSNKV-KISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 229 ~~H~pll~~~~g~-KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+.|.|+|.+-+|+ ||||+.++ +.|. -+|+.+...+..
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n~I~L~------d~p~~i~~Ki~~ 239 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGNAIALG------DSADEVARKVMG 239 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTCCCBTT------CCHHHHHHHHHT
T ss_pred eecCccccCCCCccccCCCCCCeecCC------CCHHHHHHHHHh
Confidence 3368999999997 99999886 4454 358999998875
No 37
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.25 E-value=3.1e-10 Score=107.07 Aligned_cols=189 Identities=11% Similarity=0.040 Sum_probs=130.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec-------CCccccchHHHHHHHHHHHHHcCCCCCCCCccc
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIE-------DTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQ 76 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie-------D~d~~r~~~~~~~~i~~~l~~lGi~~d~~~~~q 76 (340)
+.+.|.| ||.||||| ..++.+|...+..|...++.|- |..+.+.+.+....+..++.++|++ . ..++|
T Consensus 31 vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~-~~~~q 105 (314)
T 2zp1_A 31 AYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-A-KYVYG 105 (314)
T ss_dssp EEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-C-EEEEG
T ss_pred EEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-e-EEEEC
Confidence 5678887 68999999 9999999999988777777763 3234577888899999999999998 3 35679
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCcee
Q psy2377 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNIT 156 (340)
Q Consensus 77 S~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~ 156 (340)
|+.... .++.+.++ .+.|.+|..++.... .|-+ . ..+ .+
T Consensus 106 s~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~----------~~~~----~-~~~------------------~~--- 144 (314)
T 2zp1_A 106 SEFQLD-KDYTLNVY----RLALKTTLKRARRSM----------ELIA----R-EDE------------------NP--- 144 (314)
T ss_dssp GGTTTS-HHHHHHHH----HHHHHSCHHHHHHHT----------TTTS----C-CCS------------------SC---
T ss_pred Chhhcc-hHHHHHHH----HHHCcCcHHHHhccc----------hhhh----h-ccC------------------CC---
Confidence 986543 33444443 356888888876531 1100 0 000 00
Q ss_pred EEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEeccee
Q psy2377 157 WNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVI 236 (340)
Q Consensus 157 ~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~ 236 (340)
+-|..+|-+--+.|=...++++++.|.|...+. .+.+-+.-+.|...|.|+|.
T Consensus 145 -----------------------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~----~l~R~i~~~~~~~~~~~~l~ 197 (314)
T 2zp1_A 145 -----------------------KVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH----MLARELLPKKVVCIHNPVLT 197 (314)
T ss_dssp -----------------------CTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH----HHHHHHSSSCCEEEEECCCB
T ss_pred -----------------------CchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH----HHHHHhcCCCcEEeeccccc
Confidence 114445555555554556899999999997654 33344444678889999999
Q ss_pred cCCC-ceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 237 DSNK-VKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 237 ~~~g-~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+.+| +||||+.++ +.|. -+|+.++.-+..
T Consensus 198 ~l~G~~KMSKS~~~~I~L~------d~~~~i~~KI~~ 228 (314)
T 2zp1_A 198 GLDGEGKMSSSKGNFIAVD------DSPEEIRAKIKK 228 (314)
T ss_dssp CTTSSSBCCTTTTCSCBTT------CCHHHHHHHHHH
T ss_pred cCCcccccCCCCcceecCC------CCHHHHHHHHHh
Confidence 9999 799999764 5554 367778777765
No 38
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.25 E-value=1.1e-11 Score=118.45 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=132.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecC-------CccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED-------TDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINR 82 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD-------~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~ 82 (340)
-|||.|||||+.+++.+|...+. +...++.|.| .|+ .++.+....+..++.++||+++. ..++||+..+
T Consensus 12 ~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~-~~i~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~- 88 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQP-QALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLE- 88 (348)
T ss_dssp CCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCHH-
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCH-HHHHHHHHHHHHHHHHhCCChhHeEEEECCcccc-
Confidence 36799999999999999987776 5666777766 454 47777888889999999999974 3788998765
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
+.+.. +.+.|.++..+++.+.. |..... |. + ..|.|
T Consensus 89 ~~el~-------w~l~~~~~~~~l~R~~~----------~k~~~~------------------~~-----~-~~~~~--- 124 (348)
T 2yy5_A 89 HSMMG-------YLMMVQSNLGELQRMTQ----------FKAKKA------------------EQ-----T-RNPNG--- 124 (348)
T ss_dssp HHHHH-------HHHHHHSBHHHHHHCHH----------HHTTC------------------------------------
T ss_pred hhHHH-------HHHHhhccHHHHhchHH----------HHHHHH------------------hh-----c-ccccc---
Confidence 33332 22357888888765421 100000 00 0 00111
Q ss_pred eeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCceEE---ec
Q psy2377 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGH---LP 233 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~~~H---~p 233 (340)
... -+-|..+|-+--+.|=...+.++|+.|.|...+......+.+.++ ++.|...| .|
T Consensus 125 ------~~~-------~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~ 191 (348)
T 2yy5_A 125 ------TLN-------IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTN 191 (348)
T ss_dssp --------C-------CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTT
T ss_pred ------CCC-------CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccc
Confidence 000 023555665555555556799999999999999888888888875 66788877 58
Q ss_pred ceecCCC--ceecccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy2377 234 MVIDSNK--VKISKRKEA----TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 234 ll~~~~g--~KLSKR~g~----~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+|.+-+| +||||+.++ +.|. -+|+.++.-+..
T Consensus 192 ~l~gL~g~~~KMSKS~~n~~~~I~L~------D~~~~i~~KI~~ 229 (348)
T 2yy5_A 192 RIMDLFDPTKKMSKSSKNQNGVIYLD------DPKEVVVKKIRQ 229 (348)
T ss_dssp TCBCSSCTTSBCCSSCSCGGGCCBTT------CCHHHHHHHHHT
T ss_pred cccCCCCcchhcCCCCCCCCceEeec------CCHHHHHHHHHh
Confidence 8888888 899999987 4443 357777776665
No 39
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.24 E-value=1.4e-10 Score=109.94 Aligned_cols=188 Identities=17% Similarity=0.173 Sum_probs=129.4
Q ss_pred CCCcCchhHHHHHHHHHHHHHHcCCcEEEEecC----Cc--cccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHHHH
Q psy2377 12 PTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TD--INRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINRYF 84 (340)
Q Consensus 12 PtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD----~d--~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~y~ 84 (340)
|||.|||||+.+++.+|+..+. +...++.|.| |+ .+..+.+....+..++.++|++++. ..++||+..+ +.
T Consensus 10 PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS~~~~-~~ 87 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPA-HA 87 (328)
T ss_dssp CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCTH-HH
T ss_pred CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecCchhh-hh
Confidence 5699999999999999987755 6677777777 53 2346777888899999999999974 3678998754 33
Q ss_pred HHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecccee
Q psy2377 85 EIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK 164 (340)
Q Consensus 85 ~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~ 164 (340)
+.. +.+.|.++-.+++.+.. | +|.+...
T Consensus 88 ~l~-------w~l~~~~~~~~l~r~~~----------~-----------------------------------k~~~~~~ 115 (328)
T 1i6k_A 88 QAA-------WMLQCIVYIGELERMTQ----------F-----------------------------------KEKSAGK 115 (328)
T ss_dssp HHH-------HHHHHHSCHHHHHTCHH----------H-----------------------------------HHHHTTC
T ss_pred HHH-------HHHhccccHHHHHHHHH----------H-----------------------------------HHHHhcc
Confidence 333 22347777776653311 1 0000000
Q ss_pred eeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCceE---Eecce
Q psy2377 165 ITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYG---HLPMV 235 (340)
Q Consensus 165 ~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~~~---H~pll 235 (340)
... +-|..+|-+--+.|=...+.++|+.|.|...+......+.+.+| +..|... |.|+|
T Consensus 116 ---~~~---------~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l 183 (328)
T 1i6k_A 116 ---EAV---------SAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARI 183 (328)
T ss_dssp ---SSC---------CHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSC
T ss_pred ---CCC---------CchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccc
Confidence 000 11444555555555455799999999999999988888888876 5567654 46899
Q ss_pred ecCCC--ceecccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy2377 236 IDSNK--VKISKRKEA----TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 236 ~~~~g--~KLSKR~g~----~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.+-+| +||||+.++ +.|. -+|+.++.-+..
T Consensus 184 ~gl~G~~~KMSKS~~n~~~~I~L~------d~~~~i~~KI~~ 219 (328)
T 1i6k_A 184 MSLVDPTKKMSKSDPNPKAYITLL------DDAKTIEKKIKS 219 (328)
T ss_dssp BCSSCTTSBCCTTCSCGGGCCBTT------CCHHHHHHHHHH
T ss_pred cCCCCCccCCCCCCCCcCceeeec------CCHHHHHHHHHh
Confidence 89888 999999987 4443 368888887776
No 40
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.02 E-value=5.4e-09 Score=98.84 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=121.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCc-EEEE------ecCCccccchHHHHHHHHHHHHHcCCCCCCC-CccccccHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGI-FILR------IEDTDINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINR 82 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~-~vlR------ieD~d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~~ 82 (340)
-|||.|||||+.+++.+|..-+. +.. +++- +.|-+ .....+....+..++.++|++++.. .+.||+..+
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~-~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~- 87 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQD-GEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE- 87 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCC-HHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCC-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-
Confidence 47899999999999998876555 333 3443 22222 3567777888889999999998753 678998654
Q ss_pred HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccc
Q psy2377 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (340)
Q Consensus 83 y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~ 162 (340)
+.+.+- .+.|.++-.++..+.......+ .. ++
T Consensus 88 ~~el~~-------~l~~~~~~~~l~r~~~~K~~~~-------------------------------~~-~~--------- 119 (322)
T 3tzl_A 88 VMELYW-------ILSQFTPMGLLERAHSYKDKVA-------------------------------KG-LS--------- 119 (322)
T ss_dssp HHHHHH-------HHGGGCBHHHHHSCHHHHHHHH-------------------------------TT-CC---------
T ss_pred HHHHHH-------HHhccCcHHHHHhhhHHHHHHc-------------------------------cC-CC---------
Confidence 333332 2458888777643211000000 00 00
Q ss_pred eeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCC------CCCceEE---ec
Q psy2377 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV------TLPFYGH---LP 233 (340)
Q Consensus 163 G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~------~~p~~~H---~p 233 (340)
+ +-|..+|-+--+.|=...+.++|.-|.|-..+.-.-.-+.+.+|. +.|.-.| .|
T Consensus 120 --~--------------~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~ 183 (322)
T 3tzl_A 120 --A--------------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVA 183 (322)
T ss_dssp --C--------------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSC
T ss_pred --C--------------chHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccc
Confidence 0 114456655555555557899999999997766655666666643 4565444 78
Q ss_pred ceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 234 MVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 234 ll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+|.+-+|+||||+.++ +.|. -+|+.++..+..
T Consensus 184 ~l~~l~G~KMSKS~~n~I~L~------d~p~~i~~KI~~ 216 (322)
T 3tzl_A 184 VVVGTDGAKMSKSYQNTIDIF------SSEKTLKKQISS 216 (322)
T ss_dssp CCBCTTSSBCCGGGTCCCBSS------CCHHHHHHHHHT
T ss_pred cccCCCCCcCCCCCCCceecC------CCHHHHHHHHHh
Confidence 9999999999999875 4554 268899888875
No 41
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=98.76 E-value=2.5e-07 Score=89.48 Aligned_cols=182 Identities=17% Similarity=0.135 Sum_probs=117.7
Q ss_pred CCCcCchhHHHHHH-HHHHHHHHcCCc-EEEEec------C-CccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHH
Q psy2377 12 PTGNLHIGGIRTAL-FSWAYARHFNGI-FILRIE------D-TDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRIN 81 (340)
Q Consensus 12 PtG~LHiG~~rtal-~~~~~ar~~~G~-~vlRie------D-~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~ 81 (340)
|||.|||||+..++ .+| +....+.. +++-.| | ..+...+.+....+..++.++|++++. ..++||+..+
T Consensus 82 PTG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~ 160 (392)
T 3jxe_A 82 PSGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK 160 (392)
T ss_dssp CSSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTH
T ss_pred CCCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHH
Confidence 66999999999996 777 33335553 334322 2 123456777788888899999999875 3678999876
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
|.+.+-.|- |..|-.++... .+ | .- +.
T Consensus 161 -~~~~~~~l~-------~~~t~~~~~~~------~~----~-----~~-~~----------------------------- 187 (392)
T 3jxe_A 161 -IYEMAIPIA-------KKINFSMAKAV------FG----F-----TE-QS----------------------------- 187 (392)
T ss_dssp -HHHHHHHHH-------HHSBHHHHHHH------HC----C-----CT-TS-----------------------------
T ss_pred -HHHHHHHHH-------hhCCHHHHhhh------hc----c-----CC-CC-----------------------------
Confidence 555555452 44555555322 00 1 00 00
Q ss_pred ceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcC-CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC
Q psy2377 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDM-KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~-githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g 240 (340)
+-|..+|-+--+.|=... .-++|..|.|-..+.-.-.-+.+.+|++.|...|.|+|.+-+|
T Consensus 188 ------------------~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG 249 (392)
T 3jxe_A 188 ------------------KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTS 249 (392)
T ss_dssp ------------------BHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCSSC
T ss_pred ------------------chHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecccccCCCC
Confidence 113344544444443334 3577888999987776667777889998898889999988888
Q ss_pred --ceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 241 --VKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 241 --~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+||||+.++ +.|. -+|+.++.=+..
T Consensus 250 ~~~KMSKS~~ns~I~L~------D~p~~I~kKI~k 278 (392)
T 3jxe_A 250 LSGKMSASKPETAIYLT------DSPEDVEKKVWK 278 (392)
T ss_dssp SSSCCCTTSGGGCCBTT------CCHHHHHHHHHT
T ss_pred CccccccCCCCCeeeCC------CCHHHHHHHHHh
Confidence 599999965 4443 356666665543
No 42
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=98.71 E-value=2.4e-07 Score=89.23 Aligned_cols=192 Identities=15% Similarity=0.055 Sum_probs=122.0
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCC-----c----cccchHHHH-HHHH----HHHHHcCCCCCCC-Ccc
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT-----D----INRSTLSAT-QTII----DGMKWLGLNYDEG-PFY 75 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~-----d----~~r~~~~~~-~~i~----~~l~~lGi~~d~~-~~~ 75 (340)
-|||.|||||+..++.+|..-+..|...++-|-|. | ....+.+.. ..+. .++.++|++++.. .+.
T Consensus 41 ~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~ 120 (375)
T 2cyc_A 41 EISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVL 120 (375)
T ss_dssp CCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEE
T ss_pred CCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 46799999998889998988887765544443331 1 123444555 5555 7889999998743 678
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCce
Q psy2377 76 QTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNI 155 (340)
Q Consensus 76 qS~~~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~ 155 (340)
||+-.+.. .+..-+.. +.|..+-.++... ..|-+ . . . . ++
T Consensus 121 qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~~----------~~~k~----r-~----------------~-~-~~-- 160 (375)
T 2cyc_A 121 ASEILEKG-DYWQTVID----ISKNVTLSRVMRS----------ITIMG----R-Q----------------M-G-EA-- 160 (375)
T ss_dssp THHHHTBH-HHHHHHHH----HHTTSBHHHHHHT----------GGGGT----C-C----------------C-C-TT--
T ss_pred cchhhhhh-HHHHHHHH----HhceeEHHHHhcc----------chhhh----h-c----------------c-C-CC--
Confidence 88633221 22222222 2344444444321 01100 0 0 0 0 00
Q ss_pred eEEeccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCC--------C-C
Q psy2377 156 TWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV--------T-L 226 (340)
Q Consensus 156 ~~~D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~--------~-~ 226 (340)
+ +-|..+|-+--+.|=...+.+++.-|.|-..+.-.-..+.+.+|. . .
T Consensus 161 ---------i--------------~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~ 217 (375)
T 2cyc_A 161 ---------I--------------DFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLK 217 (375)
T ss_dssp ---------C--------------BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEEC
T ss_pred ---------C--------------ChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCc
Confidence 0 125566766666665567899999999998877777777788886 3 6
Q ss_pred CceEEecceecCCC------------------ceecccC-C-CCChHHHHHcCCCHHHHHHHHHH
Q psy2377 227 PFYGHLPMVIDSNK------------------VKISKRK-E-ATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 227 p~~~H~pll~~~~g------------------~KLSKR~-g-~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
|...|.|+|.+-+| +||||+. + ++.|. -+|+.++..+..
T Consensus 218 ~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~------d~p~~i~~KI~~ 276 (375)
T 2cyc_A 218 PVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIH------DSPEEIRQKLRK 276 (375)
T ss_dssp CEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTT------CCHHHHHHHHHH
T ss_pred cEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccC------CCHHHHHHHHHH
Confidence 77889999999988 8999998 3 46665 358899998876
No 43
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=98.67 E-value=4.3e-07 Score=87.63 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=114.0
Q ss_pred CCCCcCchhHHHHH-HHHHHHHHHcCCcEEEEecCCc-------cccchHHHHHHHHHHHHHcCCCCCC-CCccccccHH
Q psy2377 11 SPTGNLHIGGIRTA-LFSWAYARHFNGIFILRIEDTD-------INRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRIN 81 (340)
Q Consensus 11 sPtG~LHiG~~rta-l~~~~~ar~~~G~~vlRieD~d-------~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~ 81 (340)
-|||.|||||+..+ +.+| +.+..+..+++-|.|.. +...+.+.....+.++.++|++++. ..+.||+..+
T Consensus 90 ~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~ 168 (386)
T 3hzr_A 90 YPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG 168 (386)
T ss_dssp CCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH
Confidence 58999999999999 7888 44444545555566632 3456677777888889999999874 2567887554
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
.|...+-+|-. .. +-++. + . .+ + . .+
T Consensus 169 ~~~~~~~~l~r---~~----t~~~~---~------~---~~-~----~----------------------------~~-- 194 (386)
T 3hzr_A 169 KMYRTISLVEK---AT----AYNVV---Q------P---FF-N----F----------------------------EY-- 194 (386)
T ss_dssp HHHHHHHHHHH---HC----BHHHH---T------T---TS-C----C----------------------------CS--
T ss_pred HHHHHHHHHHh---hc----cHHHH---H------H---Hh-C----C----------------------------CC--
Confidence 22222211110 00 00000 0 0 00 0 0 00
Q ss_pred ceeeeecCCCCCCeEEEecCC---CcchhhHHHh----hhhcCC--CcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEe
Q psy2377 162 KGKITISNKELDDLVIVRADG---IPTYNFCAAI----DDWDMK--ITHVIRGDDHINNTPRQINILKALGVTLPFYGHL 232 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG---~ptY~la~vv----DD~~~g--ithvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~ 232 (340)
.+ +-| ||.-+.|+++ +|++.. -++|-.|.|-..+.-.-.-+.+.+|.+.|...|.
T Consensus 195 --~~--------------~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~ 258 (386)
T 3hzr_A 195 --SD--------------NIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFH 258 (386)
T ss_dssp --SS--------------BHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred --CC--------------chhhHhhHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCCCCceEeec
Confidence 00 113 3444455444 255432 3556569999887777778888999988988899
Q ss_pred cceecCCCc-eecccC--CCCChHHHHHcCCCHHHHHHHHHHh
Q psy2377 233 PMVIDSNKV-KISKRK--EATDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 233 pll~~~~g~-KLSKR~--g~~~l~~l~~~G~~p~al~~~l~~l 272 (340)
|+|.+-+|. ||||++ +++.|.+ +|+.++.-+...
T Consensus 259 ~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k~ 295 (386)
T 3hzr_A 259 KMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINKL 295 (386)
T ss_dssp CCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHHT
T ss_pred CeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHHh
Confidence 999998985 999994 3466642 688888877764
No 44
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=98.65 E-value=1.4e-06 Score=85.36 Aligned_cols=184 Identities=10% Similarity=0.102 Sum_probs=108.6
Q ss_pred CCC-CcCchhHHHHHH-HHHHHHHHcCCcEEEEecC----Cc----cccchHHHHHHHHHHHHHcCCCCCC-CCcccccc
Q psy2377 11 SPT-GNLHIGGIRTAL-FSWAYARHFNGIFILRIED----TD----INRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKR 79 (340)
Q Consensus 11 sPt-G~LHiG~~rtal-~~~~~ar~~~G~~vlRieD----~d----~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~ 79 (340)
-|| |.|||||+..++ .+| +.+..+...++-|-| ++ +...+.+.+..+..++.++|++++. .++.||+.
T Consensus 110 dPTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~ 188 (432)
T 2ip1_A 110 GPSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQY 188 (432)
T ss_dssp CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHH
T ss_pred cCCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchh
Confidence 478 899999999877 566 333356554554555 22 2345677777888888899999864 36788875
Q ss_pred H-HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEE
Q psy2377 80 I-NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWN 158 (340)
Q Consensus 80 ~-~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~ 158 (340)
. ..|.+.+-.+ ++ ..+.++++. +| + . + .+.
T Consensus 189 ~~~~~~~~~~~v-~r------m~~~~~~k~------------r~-~----~---~-----~~~----------------- 219 (432)
T 2ip1_A 189 MGGAFYETVVRV-SR------QITGSTAKA------------VF-G----F---N-----DSD----------------- 219 (432)
T ss_dssp CSHHHHHHHHHH-HT------SCCHHHHHH------------TT-C----C---C-----TTS-----------------
T ss_pred hhhhHHHHHHHH-Hh------hhcHHHHHH------------Hh-C----C---C-----CCC-----------------
Confidence 4 2333333321 11 012222211 01 0 0 0 000
Q ss_pred eccceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhc-----------CCCcEEEeCCCCCCcHHHHHHHHHHhCCCCC
Q psy2377 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWD-----------MKITHVIRGDDHINNTPRQINILKALGVTLP 227 (340)
Q Consensus 159 D~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~-----------~githvIrG~D~~~~t~~q~~l~~aLg~~~p 227 (340)
+-|..+|-+--+.|=.. .+.++|..|.|-..+.-.-.-+.+.+|++.|
T Consensus 220 ---------------------s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p 278 (432)
T 2ip1_A 220 ---------------------CIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKP 278 (432)
T ss_dssp ---------------------CHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCC
T ss_pred ---------------------chhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCCCCc
Confidence 01223443333322111 3578899999999888777788899999889
Q ss_pred ceEEecceecCCC--ceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 228 FYGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 228 ~~~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
...|.|+|.+-+| +||||+.++ +.|. -+|+.++.-+..
T Consensus 279 ~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~~KI~~ 320 (432)
T 2ip1_A 279 ALLHSRFFPALQGSTTKMSASDDTTAIFMT------DTPKQIQKKINK 320 (432)
T ss_dssp EEEEECCCCCTTC--------CGGGCCBTT------CCHHHHHHHHHH
T ss_pred eeeccccccCCCCCccccCCCCCCCeEecc------CCHHHHHHHhhh
Confidence 8899999999999 899999865 5554 357777776665
No 45
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=98.65 E-value=2.8e-07 Score=90.15 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC--CChHHH
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA--TDIMYY 255 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~--~~l~~l 255 (340)
|.++|.+--+.|=... +.++++-|.|-..|...-.-+.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 167 ~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d- 245 (432)
T 2jan_A 167 TEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLDP- 245 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSST-
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEccC-
Confidence 4456665555554445 8999999999999998888888999888788888999999999999999876 55543
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhh
Q psy2377 256 KKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 256 ~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~ 318 (340)
.-.+|+.+..++... ++. .+..+++.|. . ++.+++..+-.+|-.
T Consensus 246 --~~tsp~~i~qki~~~----~D~---~v~~~l~l~t-~---------~~~~ei~~l~~~~~~ 289 (432)
T 2jan_A 246 --QMTSPYAWYQYFVNT----ADA---DVIRYLRWFT-F---------LSADELAELEQATAQ 289 (432)
T ss_dssp --TTSCHHHHHHHHHTC----CHH---HHHHHHHHHS-C---------CCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHhcC----Cch---hHHHHHHHHH-c---------CChHHHHHHHHHHhh
Confidence 345888888888742 111 2334555554 1 355666666665553
No 46
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.65 E-value=5.2e-08 Score=103.15 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=72.7
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc-------------cchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN-------------RSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~-------------r~~~~~~~~i~~~l~~lG 66 (340)
++=-.|+|||.|||||+|++++.|+++| ...|+-|+. +|+.+.+ .....+++.|.++|+.||
T Consensus 57 v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LG 136 (880)
T 4arc_A 57 CLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLG 136 (880)
T ss_dssp EEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3334699999999999999999999999 568998887 5555432 335667888999999999
Q ss_pred CCCC--CCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 67 LNYD--EGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 67 i~~d--~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+..| . .++.+ ++....+.+..+|.++|++|.
T Consensus 137 is~Dw~~-~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 137 FGYDWSR-ELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CCCCGGG-CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCcCCCC-CEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 8666 3 23333 467778888999999999985
No 47
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.59 E-value=1e-07 Score=101.17 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=73.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEE---ecCCccc-------------cchHHHHHHHHHHHHHcC
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IEDTDIN-------------RSTLSATQTIIDGMKWLG 66 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlR---ieD~d~~-------------r~~~~~~~~i~~~l~~lG 66 (340)
++=-.|+|||.|||||+|++++.|+++| ...|+-|+. +++.+.+ .....+++.+.++|+.||
T Consensus 37 v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LG 116 (878)
T 2v0c_A 37 VLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMG 116 (878)
T ss_dssp EEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3434699999999999999999999999 568888887 4444422 345778899999999999
Q ss_pred CCCC--CC-CccccccHHHHHHHHHHHHHcCCccc
Q psy2377 67 LNYD--EG-PFYQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 67 i~~d--~~-~~~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
+..| .. .....++.+..+.+..+|.++|++|.
T Consensus 117 i~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 117 ILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp CCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 8666 32 23344577888899999999999984
No 48
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=98.57 E-value=8e-07 Score=87.02 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCc-eecccCCC-CChHHHHHcC
Q psy2377 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV-KISKRKEA-TDIMYYKKKG 259 (340)
Q Consensus 182 G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~-KLSKR~g~-~~l~~l~~~G 259 (340)
|.++|.+--+.|=.....++++.|.|...|...-..+.+.+|..+|...+.|+|.+.+|+ ||||+.++ +.|.+
T Consensus 171 ~ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d----- 245 (432)
T 1h3f_A 171 HELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE----- 245 (432)
T ss_dssp GGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----
T ss_pred cccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC-----
Confidence 456776666666666679999999999999998889999999887888899999999997 99999875 66653
Q ss_pred CCHHHHHHHHHH
Q psy2377 260 FLPEAILNYLAR 271 (340)
Q Consensus 260 ~~p~al~~~l~~ 271 (340)
+|+.+..++..
T Consensus 246 -sp~~i~~Ki~~ 256 (432)
T 1h3f_A 246 -PPEAMFKKLMR 256 (432)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHHhC
Confidence 89999988875
No 49
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.53 E-value=2e-07 Score=98.36 Aligned_cols=94 Identities=21% Similarity=0.127 Sum_probs=71.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEe---cCCccc------------------------------
Q psy2377 4 VRTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRI---EDTDIN------------------------------ 48 (340)
Q Consensus 4 ~~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRi---eD~d~~------------------------------ 48 (340)
+++--+|+|||+|||||++++++.|+++| ...|+.|+++ ++.+.+
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 56777899999999999999999999999 6789999884 443321
Q ss_pred -------cchHHHHHHHHHHHHHcCCCCC--CCCcccc----ccHHHHHHHHHHHHHcCCccc
Q psy2377 49 -------RSTLSATQTIIDGMKWLGLNYD--EGPFYQT----KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 49 -------r~~~~~~~~i~~~l~~lGi~~d--~~~~~qS----~~~~~y~~~~~~L~~~G~aY~ 98 (340)
.....+.+.+.++|++||+..| . .++.+ .+.+..+.+..+|.++|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~-~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSR-EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGG-CCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCC-ceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 1123445778899999998665 4 33333 355666788889999999984
No 50
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=98.50 E-value=5.3e-06 Score=80.21 Aligned_cols=185 Identities=17% Similarity=0.145 Sum_probs=104.2
Q ss_pred CCC-CcCchhHHHHHH-HHHHHHHHcCCcEEEEecCCc--------cccchHHHHHHHHHHHHHcCCCCCCC-Ccccccc
Q psy2377 11 SPT-GNLHIGGIRTAL-FSWAYARHFNGIFILRIEDTD--------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKR 79 (340)
Q Consensus 11 sPt-G~LHiG~~rtal-~~~~~ar~~~G~~vlRieD~d--------~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~ 79 (340)
-|| |.|||||+..++ .+| +.+..+...++-|-|.. +...+.+.+..+..++.++|++++.. ++.||+.
T Consensus 82 ~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~ 160 (393)
T 3hv0_A 82 GPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEY 160 (393)
T ss_dssp CCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHH
T ss_pred CCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHH
Confidence 478 689999999999 777 34443445566676532 23456777778888999999998752 5677765
Q ss_pred HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEe
Q psy2377 80 INRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWND 159 (340)
Q Consensus 80 ~~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D 159 (340)
...| ...+.+-+. |+ |-.++... .+ ++. +.
T Consensus 161 ~~~~---~~~~~~l~r---~~-t~~~~~~~------~~---------~~~-~~--------------------------- 190 (393)
T 3hv0_A 161 IAEL---YPDILRIEK---KI-SCSQIKSI------FG---------FKD-SC--------------------------- 190 (393)
T ss_dssp HHHH---HHHHHHHHH---HS-BHHHHHHH------HC---------CCT-TS---------------------------
T ss_pred HHHH---HHHHHHHHc---cC-CHHHHHHh------hC---------CCC-CC---------------------------
Confidence 4422 111221111 11 11221110 00 000 00
Q ss_pred ccceeeeecCCCCCCeEEEecCCCcchhhHHHhhh-------h---cCCC-cEEEeCCCCCCcHHHHHHHHHHhCCCCCc
Q psy2377 160 LIKGKITISNKELDDLVIVRADGIPTYNFCAAIDD-------W---DMKI-THVIRGDDHINNTPRQINILKALGVTLPF 228 (340)
Q Consensus 160 ~i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD-------~---~~gi-thvIrG~D~~~~t~~q~~l~~aLg~~~p~ 228 (340)
+-|..+|-+--+.|= . ..+| ++|..|.|-..+.-.-..+.+.+|++.|.
T Consensus 191 --------------------s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~ 250 (393)
T 3hv0_A 191 --------------------NVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPS 250 (393)
T ss_dssp --------------------BHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCE
T ss_pred --------------------chhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCce
Confidence 012334433332221 0 1134 57789999988877777788889999999
Q ss_pred eEEecceecCCC--ceecccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 229 YGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 229 ~~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~l 272 (340)
..|.|+|.+-+| .||||+.++ +.|. -+|+.++.-+...
T Consensus 251 ~l~~~~l~gLdG~~~KMSKS~~nsaI~L~------D~p~~i~kKI~k~ 292 (393)
T 3hv0_A 251 SIHSIFLPSLQGSQTKMSASVQNSSIFVN------DNEESIRNKIMKY 292 (393)
T ss_dssp EEEECCCCC-------------CCCCBTT------CCHHHHHHHHHHH
T ss_pred eeccCcccCCCCCCcCCCCCCCCCeEecc------CCHHHHHHHHHhh
Confidence 899999999899 799999864 5554 3688888877664
No 51
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=98.50 E-value=4.6e-07 Score=86.49 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=116.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCC-----c----cccchHHHHHHHHHHHHHcCCCCCCC-CccccccH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT-----D----INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRI 80 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~-----d----~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~ 80 (340)
-|||.|||||+..++.++..-+..|...+.-|-|. | +...+.+....+.+.+.++|++++.. .+.||+-+
T Consensus 48 ~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 48 EPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp CCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhh
Confidence 46699999998888888887777654444443331 1 23566777888888899999998743 67888632
Q ss_pred HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEec
Q psy2377 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (340)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~ 160 (340)
.....+..-+. |....-.+..+. +.+ +. .+ |..
T Consensus 128 ~~~~~~~~~~~-------~v~~~~~~~~m~----------~~~-------~~------~~-----r~~------------ 160 (348)
T 2j5b_A 128 ASNPSYIERML-------DIAEFSTISRVK----------RCC-------QI------MG-----RNE------------ 160 (348)
T ss_dssp HHCHHHHHHHH-------HHHHHHHHHHHT----------C---------------------------------------
T ss_pred hhhhHHHHHHH-------HHHhheeHHHHH----------hhh-------hh------hh-----hhc------------
Confidence 11111111111 111111121110 000 00 00 000
Q ss_pred cceeeeecCCCCCCeEEEecCCCcchhhHHHhhhhcC---CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceec
Q psy2377 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDM---KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVID 237 (340)
Q Consensus 161 i~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~---githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~ 237 (340)
+|-+ +-|..+|-+--+.|=... +.++++-|.|-..+.-.-.-+.+.+|...|...|.|+|.+
T Consensus 161 ------------~~~i---~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~g 225 (348)
T 2j5b_A 161 ------------SDCL---KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMS 225 (348)
T ss_dssp -----------------------CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCC
T ss_pred ------------cCCc---ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccC
Confidence 0000 225566766555555555 8999999999988877777778899998898899999988
Q ss_pred C-CC-ceecccCC--CCChHHHHHcCCCHHHHHHHHHH
Q psy2377 238 S-NK-VKISKRKE--ATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 238 ~-~g-~KLSKR~g--~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
- +| +||||+.+ ++.|. -+|+.++.-+..
T Consensus 226 L~dg~~KMSKS~~~~~I~L~------d~p~~i~kKI~k 257 (348)
T 2j5b_A 226 LSGPKKKMSKSDPQGAIFMD------DTEQEVSEKISR 257 (348)
T ss_dssp TTCSSCCCSTTCGGGSCBTT------CCHHHHHHHHHH
T ss_pred CCCcccccccCCCCCeEeec------CCHHHHHHHHhc
Confidence 8 67 69999983 56665 367778777766
No 52
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=98.49 E-value=9e-08 Score=92.32 Aligned_cols=189 Identities=14% Similarity=0.150 Sum_probs=107.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCc-EEEEec-----CCccccchHHHHHHHHHHHHHcCCCCCC-CCccccccHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGI-FILRIE-----DTDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINRY 83 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~-~vlRie-----D~d~~r~~~~~~~~i~~~l~~lGi~~d~-~~~~qS~~~~~y 83 (340)
.|||.|||||+.+++.+|..-+. +.. +++-.| +-.++....+.+.++..++.++|++++. ..+.||+..+ +
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~-~ 120 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPA-H 120 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTH-H
T ss_pred CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccc-h
Confidence 57899999999999998875554 332 333322 2223456777888889999999999985 3678998643 3
Q ss_pred HHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeccce
Q psy2377 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (340)
Q Consensus 84 ~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G 163 (340)
.+..- .+.|..+-.+++.+ +.| .+. .+.. +
T Consensus 121 ~el~w-------~l~~~~~~~~L~R~----------~~f----k~k-----------------~~~~--------~---- 150 (388)
T 3prh_A 121 AQAGW-------MMQCVAYIGELERM----------TQF----KDK-----------------SKGN--------E---- 150 (388)
T ss_dssp HHHHH-------HHHTTSCHHHHHTT----------C-------------------------------------------
T ss_pred HHHHH-------HHHhhccHHHHHhh----------hhH----hHH-----------------hhcc--------C----
Confidence 33322 23476676665321 111 000 0000 0
Q ss_pred eeeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCC--CCceEEecce------
Q psy2377 164 KITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT--LPFYGHLPMV------ 235 (340)
Q Consensus 164 ~~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~--~p~~~H~pll------ 235 (340)
+. +-|..+|-+--+.|=...+.++|.-|.|-..+...-.-+.+.+|.. .+.-.+-|++
T Consensus 151 -----~~---------~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~ 216 (388)
T 3prh_A 151 -----AV---------VSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGAR 216 (388)
T ss_dssp -----CC---------BHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCC
T ss_pred -----CC---------cchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccc
Confidence 00 1144455444444444568999999999976665555666666531 1111222222
Q ss_pred -ecC-C-CceecccC---C-CCChHHHHHcCCCHHHHHHHHHH
Q psy2377 236 -IDS-N-KVKISKRK---E-ATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 236 -~~~-~-g~KLSKR~---g-~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.+- + ++||||+. + ++.|. -+|+.|+.=+..
T Consensus 217 l~gL~dg~~KMSKS~~~~~n~I~L~------D~p~~I~kKI~k 253 (388)
T 3prh_A 217 IMSLNDPLKKMSKSDPNQKAYITLL------DEPKQLEKKIKS 253 (388)
T ss_dssp CBCSSCTTSBCCTTCSSTTSCCBTT------CCHHHHHHHHHT
T ss_pred cccCCCCCCccCCCCCCCCCeeecC------CCHHHHHHHHhh
Confidence 222 3 37999998 3 35543 256666665554
No 53
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=98.45 E-value=2.6e-06 Score=83.18 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=82.3
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHh-CCCCCceEEecceecCCCceecccCCC-CChHHH
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKAL-GVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYY 255 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aL-g~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l 255 (340)
|.++|.+--+.|=... +.++++-|.|-..|.-.-.-+.+.+ +..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 166 ~ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d- 244 (420)
T 1jil_A 166 TEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDA- 244 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSST-
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecCC-
Confidence 4456666555555455 8999999999999988888888999 887788889999999999999999875 55553
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHh
Q psy2377 256 KKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYI 317 (340)
Q Consensus 256 ~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i 317 (340)
.-.+|+.+..++... ++. .+..+++.|. . ++.+++..+-.+|-
T Consensus 245 --~~tsp~~i~~ki~~~----~D~---~v~~~l~~~t-~---------~~~~ei~~l~~~~~ 287 (420)
T 1jil_A 245 --EKTSPYEFYQFWINQ----SDE---DVIKFLKYFT-F---------LGKEEIDRLEQSKN 287 (420)
T ss_dssp --TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC-C---------CCHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHhcC----Cch---hHHHHHHHHH-c---------CCHHHHHHHHHHHh
Confidence 335788888888641 111 2344555555 1 34566666655555
No 54
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=98.43 E-value=3.6e-06 Score=83.38 Aligned_cols=68 Identities=10% Similarity=-0.019 Sum_probs=56.0
Q ss_pred CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC--ceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+.++|..|.|-..+.-.-.-+.+.+|++.|...|.|+|.+.+| .||||+.++ +.|. -+|+.|+.-+..
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~kKi~~ 374 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNK 374 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTT------CCHHHHHHHHHH
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeec------CCHHHHHHHhcc
Confidence 4578888999998888888888999998898899999999999 899999875 5554 357777776665
No 55
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=98.41 E-value=1.8e-06 Score=83.10 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=114.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEecCCc--------cccchHHHHHHHHHHHHHcCCCCCCC-CccccccHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTD--------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRIN 81 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRieD~d--------~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~ 81 (340)
-|||.|||||+.+++..+.+ ++.+...++-|-|.. .+......+.+...++.++|++++.. .++||++..
T Consensus 78 ~PTG~lHLGhyv~~~~~~~l-q~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~ 156 (372)
T 3a04_A 78 MPSGKFHFGHKLTVDQLIYL-QKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGT 156 (372)
T ss_dssp CCCSCCBHHHHHHHHHHHHH-HHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCH
T ss_pred CCCcHhHHHHHHHHHHHHHH-HhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccchH
Confidence 47899999999977665544 444444443344321 22345667777788899999999864 678998766
Q ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecc
Q psy2377 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (340)
Q Consensus 82 ~y~~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i 161 (340)
.|.+.+..+ .|..+..+++... + .. +.
T Consensus 157 ~~~~l~~~~-------~~~~~~~~~~~~~------~----------~~-~~----------------------------- 183 (372)
T 3a04_A 157 PYFRLIQLF-------SGKVTAAEMEAIY------G----------EL-TP----------------------------- 183 (372)
T ss_dssp HHHHHHHHH-------TTSSCHHHHHHHH------S----------SC-CH-----------------------------
T ss_pred HHHHHHHHH-------HhhhhHHHHhhhh------h----------cc-Cc-----------------------------
Confidence 555544332 3445555553321 0 00 00
Q ss_pred ceeeeecCCCCCCeEEEecCCCcchhhHHHhh---hhc--CCCcEEEeCCCCCCcHHHHHHHHHHhC----CCCCceEEe
Q psy2377 162 KGKITISNKELDDLVIVRADGIPTYNFCAAID---DWD--MKITHVIRGDDHINNTPRQINILKALG----VTLPFYGHL 232 (340)
Q Consensus 162 ~G~~~~~~~~~~DfVl~R~dG~ptY~la~vvD---D~~--~githvIrG~D~~~~t~~q~~l~~aLg----~~~p~~~H~ 232 (340)
|. -.+|.-+.|+++- |.. -.-++|=.|.|-..+...-.-+.+.+| ++.|.-.|.
T Consensus 184 -~~----------------~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~ 246 (372)
T 3a04_A 184 -AK----------------MMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYH 246 (372)
T ss_dssp -HH----------------HHHHHHHHHHHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEE
T ss_pred -cc----------------ccCCcchhHHHhhhcCccccCccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhh
Confidence 00 0245555666531 222 234577779998766655556667776 677888899
Q ss_pred cceecCCCceecccCCCCChHHHHHcCCCHHHHHHHHHH
Q psy2377 233 PMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 233 pll~~~~g~KLSKR~g~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+++-.-+|.||||+..+.+|. .--+|+.++.=+..
T Consensus 247 ~~~pgldG~KmS~S~~ns~I~----l~D~p~~i~kKI~k 281 (372)
T 3a04_A 247 KLQPGLDGRKMSSSRPDSTIF----LTDPPEVARNKLFR 281 (372)
T ss_dssp CCCBCTTSSBCCTTSGGGSCB----TTCCHHHHHHHHHT
T ss_pred cccCCCCCCccCCCCCCcccc----cCCCHHHHHHHHhc
Confidence 998888999999998653332 11367777776654
No 56
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=98.39 E-value=2.2e-06 Score=83.62 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=81.2
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHh-CCCCCceEEecceecCCCceecccCCC-CChHHH
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKAL-GVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYY 255 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aL-g~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l 255 (340)
|.++|.+--+.|=... +.++++-|.|-..|.-.-.-+.+.+ +..+|.-.+.|++.+.+|+||||+.++ +.|.+
T Consensus 165 ~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~d- 243 (419)
T 2ts1_A 165 TEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDK- 243 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSST-
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecCC-
Confidence 4456665555554455 8999999999999988888888999 877778889999999999999999874 66653
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhh
Q psy2377 256 KKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 256 ~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~ 318 (340)
.-.+|+.+..++... ++. .+..+++.|. . ++.+++..+-.+|-.
T Consensus 244 --~~tsp~~i~qki~~~----~D~---~v~~~l~l~t-~---------~~~~ei~~l~~~~~~ 287 (419)
T 2ts1_A 244 --EKTSPYEFYQFWINT----DDR---DVIRYLKYFT-F---------LSKEEIEALEQELRE 287 (419)
T ss_dssp --TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC-C---------CCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHhcC----Cch---hHHHHHHHHH-c---------CCHHHHHHHHHHHHc
Confidence 335788888888641 111 2344555555 1 345666666666653
No 57
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=98.38 E-value=4.3e-07 Score=85.80 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHHH
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (340)
|..+|-+--+.|=... +.+.++-|.|-..+.-.-.-+.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 171 g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d-- 248 (322)
T 2yxn_A 171 TEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP-- 248 (322)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST--
T ss_pred hhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC--
Confidence 4445554444443333 7776677999999888888888999887777788999999899999999885 55554
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHh
Q psy2377 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYI 317 (340)
Q Consensus 257 ~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i 317 (340)
.-.+|+.+..++... ++ -.+..+++.|. . ++.+++..+-.+|-
T Consensus 249 -~~tsp~~~~~ki~~~----~d---~~v~~~l~~~~-~---------~~~~~i~~l~~~~~ 291 (322)
T 2yxn_A 249 -KKTSPYKFYQFWINT----AD---ADVYRFLKFFT-F---------MSIEEINALEEEDK 291 (322)
T ss_dssp -TTSCHHHHHHHHHTC----CH---HHHHHHHHHHC-C---------CCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHhCC----Cc---ccHHHHHHHHH-c---------CCHHHHHHHHHHHH
Confidence 336888998888642 11 12345555555 1 24566666655655
No 58
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=98.38 E-value=4.3e-07 Score=86.42 Aligned_cols=191 Identities=18% Similarity=0.249 Sum_probs=109.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec-----CCccccchHHHHHHHHHHHHHcCCCCCCC-CccccccHHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE-----DTDINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRYF 84 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie-----D~d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~~y~ 84 (340)
.|||.|||||+.+++-+|..-+...-.+++-.| +-.++....+.+..+..++.++|++++.. .+.||+..+. .
T Consensus 23 ~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~v~~~-~ 101 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEH-S 101 (346)
T ss_dssp CSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGCTHH-H
T ss_pred CCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccccccc-h
Confidence 578999999999999888644332222333322 22334667788888899999999999863 6789985432 2
Q ss_pred HHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecccee
Q psy2377 85 EIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK 164 (340)
Q Consensus 85 ~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~ 164 (340)
+.. +.+.|.++..+++.+.......+ ++ . +
T Consensus 102 el~-------~~l~~~~~~~~l~R~~~~k~~~~---~~-------------------------~----------~----- 131 (346)
T 3n9i_A 102 QLS-------WALNCYTYFGELSRMTQFKDKSA---RY-------------------------A----------E----- 131 (346)
T ss_dssp HHH-------HHHHTTSBHHHHHTCHHHHHHHH---HS-------------------------G----------G-----
T ss_pred HHH-------HHHHHHhhHHHHHHHHHHHHHHh---cc-------------------------C----------C-----
Confidence 211 22456667666653321100000 00 0 0
Q ss_pred eeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC------CCCCc--e-EEecce
Q psy2377 165 ITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPF--Y-GHLPMV 235 (340)
Q Consensus 165 ~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg------~~~p~--~-~H~pll 235 (340)
+. +-|..+|-+--+.|=...+.++|..|.|-..+.-.-..+.+.+| +..|. . .|.+.+
T Consensus 132 ----~~---------~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l 198 (346)
T 3n9i_A 132 ----NI---------NAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARV 198 (346)
T ss_dssp ----GC---------BHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCC
T ss_pred ----CC---------CchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccC
Confidence 00 11444555444455456689999999999766655555556655 12232 2 122444
Q ss_pred ecC-CC-ceecccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy2377 236 IDS-NK-VKISKRKEA----TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 236 ~~~-~g-~KLSKR~g~----~~l~~l~~~G~~p~al~~~l~~ 271 (340)
.+- +| +||||+.++ +.|. -+|+.|+.-+..
T Consensus 199 ~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~k 234 (346)
T 3n9i_A 199 MSLQDPTKKMSKSDDNRNNVIELL------EDPKSVVKKIKR 234 (346)
T ss_dssp BCSSCTTSBCCTTCSCGGGCCBTT------SCHHHHHHHHHT
T ss_pred ccCCCCccccCCCCCCCCceecCC------CCHHHHHHHHHh
Confidence 444 56 499999863 4443 356777666654
No 59
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=98.38 E-value=7e-06 Score=79.64 Aligned_cols=68 Identities=16% Similarity=0.021 Sum_probs=54.7
Q ss_pred CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC--ceecccCC--CCChHHHHHcCCCHHHHHHHHHH
Q psy2377 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKE--ATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g--~KLSKR~g--~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+.++|..|.|-..+.-.-.-+.+.+|++.|...|.|+|.+-+| .||||+.. ++.|. -+|+.++.=+..
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~------D~p~~I~kKI~k 314 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD------DAQDTIRKKIIA 314 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTT------CCHHHHHHHHHH
T ss_pred CCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCC------CCHHHHHHHHHh
Confidence 4667788999988777777788899999998889999999999 69999973 56664 367777776655
No 60
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=98.37 E-value=3.1e-06 Score=81.41 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=63.8
Q ss_pred CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCC-CCceEEecceecC-CCc-eecccCC--CCChHHHH
Q psy2377 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDS-NKV-KISKRKE--ATDIMYYK 256 (340)
Q Consensus 182 G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~-~p~~~H~pll~~~-~g~-KLSKR~g--~~~l~~l~ 256 (340)
|..+|-+--+.|=...+.+++.-|.|-..+.-.-..+.+.+|.. .|...|.|+|.+- +|+ ||||+.+ ++.|.
T Consensus 184 g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~--- 260 (373)
T 3vgj_A 184 SQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD--- 260 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT---
T ss_pred HHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecC---
Confidence 55666666666666678999999999987776667778889976 5888899999884 885 9999984 45554
Q ss_pred HcCCCHHHHHHHHHH
Q psy2377 257 KKGFLPEAILNYLAR 271 (340)
Q Consensus 257 ~~G~~p~al~~~l~~ 271 (340)
-+|+.++.-+..
T Consensus 261 ---D~p~~i~~KI~k 272 (373)
T 3vgj_A 261 ---DSESDVNRKIKK 272 (373)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHh
Confidence 367777776665
No 61
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=98.36 E-value=1.2e-07 Score=90.07 Aligned_cols=191 Identities=17% Similarity=0.242 Sum_probs=109.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCcEEEEec-----CCccccchHHHHHHHHHHHHHcCCCCCCC-CccccccHHHHH
Q psy2377 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIE-----DTDINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRYF 84 (340)
Q Consensus 11 sPtG~LHiG~~rtal~~~~~ar~~~G~~vlRie-----D~d~~r~~~~~~~~i~~~l~~lGi~~d~~-~~~qS~~~~~y~ 84 (340)
.|||.|||||+.+++-+|..-+...-.+++-.| +-.++..+.+....+..++.++|++++.. .++||+..+. .
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~qS~v~~~-~ 92 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEH-A 92 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHH-H
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEeccchhhh-H
Confidence 477999999999999888755553223444322 12234667888888999999999999853 6789985432 2
Q ss_pred HHHHHHHHcCCcccccCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEecccee
Q psy2377 85 EIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK 164 (340)
Q Consensus 85 ~~~~~L~~~G~aY~c~cs~~~l~~~~~~~~~~~~~~~Y~g~cr~~~~~~e~~~~~~~~~~~Rl~~~~~~~~~~~D~i~G~ 164 (340)
+.. +.+.|.++..+++.+..-....+ |.. +
T Consensus 93 el~-------~~l~~~~~~~~l~R~~~~k~~~~----------------------------~~~----------~----- 122 (341)
T 3sz3_A 93 QLG-------WVLNCYTQMGELSRMTQFKDKSA----------------------------RYA----------N----- 122 (341)
T ss_dssp HHH-------HHHHTTSCHHHHHTCHHHHHHHH----------------------------HHG----------G-----
T ss_pred HHH-------HHHHhhccHHHHHHHHHHHHHHh----------------------------hcc----------C-----
Confidence 211 22357777777654321000000 000 0
Q ss_pred eeecCCCCCCeEEEecCCCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhC--CC-------CCc-eEE--e
Q psy2377 165 ITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG--VT-------LPF-YGH--L 232 (340)
Q Consensus 165 ~~~~~~~~~DfVl~R~dG~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg--~~-------~p~-~~H--~ 232 (340)
+. +-|..+|-+--+.|=...+.++|..|.|-..+.-.-.-+.+.+| +. .|. ..+ .
T Consensus 123 ----~~---------~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~ 189 (341)
T 3sz3_A 123 ----DV---------NAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVN 189 (341)
T ss_dssp ----GC---------CHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCC
T ss_pred ----CC---------ChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCc
Confidence 00 11444555444455455688999999998766655555556554 11 221 111 2
Q ss_pred cceecC-CC-ceecccCC----CCChHHHHHcCCCHHHHHHHHHH
Q psy2377 233 PMVIDS-NK-VKISKRKE----ATDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 233 pll~~~-~g-~KLSKR~g----~~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+.+.+- +| +||||+.. ++.|. -+|+.|+.=+..
T Consensus 190 ~~l~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~~ 228 (341)
T 3sz3_A 190 ARVMSLQDATKKMSKSDDNRKNVITLL------EDPKSIIKKINK 228 (341)
T ss_dssp CCCEETTEEEEECCTTCSCGGGCCBTT------CCHHHHHHHHHT
T ss_pred ccccCCCCCCCccCCCCCCCCCeeecC------CCHHHHHHHhhh
Confidence 334444 46 69999984 34443 356666665554
No 62
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=98.34 E-value=3.8e-06 Score=80.29 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=71.1
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCceecccCCC-CChHHHH
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (340)
|..+|.+--+.|=... +.++++-|.|-..+.-.-.-+.+.++..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 190 g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 267 (356)
T 2pid_A 190 AEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR-- 267 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST--
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC--
Confidence 4556655555554445 8999999999999888888888999987788888999999999999999874 56653
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhh
Q psy2377 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 257 ~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~ 318 (340)
.-.+|+.+..++... ++. .+..+++.|. .++.+++..+-.+|-.
T Consensus 268 -~~tsp~~i~~ki~~~----~D~---~v~~~l~~~t----------~~~~~~i~~l~~~~~~ 311 (356)
T 2pid_A 268 -DKTSPFELYQFFVRQ----PDD---SVERYLKLFT----------FLPLPEIDHIMQLHVK 311 (356)
T ss_dssp -TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC----------CCCHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHcC----Cch---hHHHHHHHHH----------cCCchHHHHHHHHHhc
Confidence 235788888888741 111 2345555555 1355666666566554
No 63
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=98.32 E-value=1.5e-05 Score=78.16 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=50.9
Q ss_pred EEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCCc--eecccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 201 HVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV--KISKRKEA--TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 201 hvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g~--KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~l 272 (340)
+|..|.|-..+.-.-..+.+.+|++.|...|.|+|.+-+|. ||||+.++ +.|. -+|+.|+.-+...
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~------D~p~~I~kKI~k~ 359 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT------DTPAQIKNKINRY 359 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT------CCHHHHHHHHHHH
T ss_pred eeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeec------CCHHHHHHHHhhh
Confidence 56679998766666666777889988988899999888885 99999975 4443 4688888777664
No 64
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=98.30 E-value=1.4e-06 Score=92.37 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=71.0
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc--------------------cc------------cc
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD--------------------IN------------RS 50 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d--------------------~~------------r~ 50 (340)
++=-+|+|||.|||||+++.++.|+++| ...|+-++.+-.+| +. ..
T Consensus 38 i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 117 (862)
T 1gax_A 38 IFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQW 117 (862)
T ss_dssp EECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHH
T ss_pred EEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHH
Confidence 3445799999999999999999999999 56899888744333 11 11
Q ss_pred hHHHHHHHHHHHHHcCCCCC-CCCcccc--ccHHHHHHHHHHHHHcCCccc
Q psy2377 51 TLSATQTIIDGMKWLGLNYD-EGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 51 ~~~~~~~i~~~l~~lGi~~d-~~~~~qS--~~~~~y~~~~~~L~~~G~aY~ 98 (340)
..++.+.+.+.|+.||+..| .-+++.. ++.+..+.+..+|.++|++|.
T Consensus 118 ~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 118 KEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 46788899999999997555 1133333 366777888889999999985
No 65
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=98.30 E-value=7.6e-07 Score=94.97 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=68.9
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCc----------------c-----c-------cchHHHH
Q psy2377 6 TRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTD----------------I-----N-------RSTLSAT 55 (340)
Q Consensus 6 ~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d----------------~-----~-------r~~~~~~ 55 (340)
+=-+|+|||.|||||+++.++.|+++| ...|+-++.+-..| + . ....+++
T Consensus 53 ~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~ 132 (917)
T 1ffy_A 53 HDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQI 132 (917)
T ss_dssp ECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHH
Confidence 334799999999999999999999999 46888776532221 1 0 1345678
Q ss_pred HHHHHHHHHcCC--CCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 56 QTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 56 ~~i~~~l~~lGi--~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
+.+.+.|+.||+ +||. ++...+ +....+.+..+|.++|++|.
T Consensus 133 ~~~~~~~~rlG~~~Dwd~-~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 133 ELQKKDFRRLGVRGDFND-PYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHTTTCCSCTTS-CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCeEEccCC-CeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 888999999998 5775 444443 55666777888999999984
No 66
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=98.30 E-value=6.7e-07 Score=86.58 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=44.1
Q ss_pred CcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC--ceecccCC-CCChHHHHHcCCCHHHHHHHHH
Q psy2377 199 ITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKE-ATDIMYYKKKGFLPEAILNYLA 270 (340)
Q Consensus 199 ithvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g--~KLSKR~g-~~~l~~l~~~G~~p~al~~~l~ 270 (340)
.+.|..|.|-..+.-.-.-+.+.+|.+.|...|.|+|.+-+| +||||+.+ ++.|.+ +|+.++.-+.
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D------~p~~i~kKI~ 293 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD------TEKMVKDKIN 293 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBTTC------CHHHHHHHHC
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccCCC------CHHHHHHHHH
Confidence 557788999988877777788899999998899999999999 79999965 466642 6777776653
No 67
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.29 E-value=2e-07 Score=98.61 Aligned_cols=90 Identities=13% Similarity=0.236 Sum_probs=66.6
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEecCCcc---c------------------------------cchH
Q psy2377 8 FAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRIEDTDI---N------------------------------RSTL 52 (340)
Q Consensus 8 faPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRieD~d~---~------------------------------r~~~ 52 (340)
-+|+|||.|||||+++.++.|+++| ...|+-|+.+-.+|. + ....
T Consensus 45 ~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~ 124 (821)
T 1ile_A 45 GPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVF 124 (821)
T ss_dssp CCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHH
Confidence 3699999999999999999999999 568887776443331 1 0122
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCccccc--cHHHHHHHHHHHHHcCCccc
Q psy2377 53 SATQTIIDGMKWLG--LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 53 ~~~~~i~~~l~~lG--i~~d~~~~~qS~--~~~~y~~~~~~L~~~G~aY~ 98 (340)
.+.+.+.+.+++|| ++||. .++..+ +.+..+.+..+|.++|++|.
T Consensus 125 ~~~~~~~~~~~~lg~~~dwd~-~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 125 TYEKEWEAFTERIAYWVDLED-AYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTHHHHTTHHHHTTCCCEEEE-EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCeEccCC-CeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 45666778899999 88886 344433 55566677789999999984
No 68
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=98.23 E-value=2.2e-05 Score=76.89 Aligned_cols=68 Identities=10% Similarity=-0.019 Sum_probs=54.3
Q ss_pred CCcEEEeCCCCCCcHHHHHHHHHHhCCCCCceEEecceecCCC--ceecccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy2377 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 198 githvIrG~D~~~~t~~q~~l~~aLg~~~p~~~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~p~al~~~l~~ 271 (340)
+.++|-.|.|-..+.-.-.-+.+.+|++.|...+.|+|.+.+| +||||+.++ +.|. -+|+.|+.-+..
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------D~p~~I~kKI~~ 327 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNK 327 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTT------CCHHHHHHHHHH
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeecc------CCHHHHHHHhhc
Confidence 3467777999988877777778889988898899999999999 899999875 5554 357777777665
No 69
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=98.16 E-value=1.8e-06 Score=92.69 Aligned_cols=93 Identities=20% Similarity=0.136 Sum_probs=67.9
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCcEEEEe---cCCcc--------------------------------
Q psy2377 5 RTRFAPSPTGNLHIGGIRTALFSWAYAR--HFNGIFILRI---EDTDI-------------------------------- 47 (340)
Q Consensus 5 ~~RfaPsPtG~LHiG~~rtal~~~~~ar--~~~G~~vlRi---eD~d~-------------------------------- 47 (340)
++=-+|+|||.||+||+++.++.|+++| ...|+-|+.. |..+-
T Consensus 38 i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~ 117 (967)
T 1wz2_A 38 ITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILW 117 (967)
T ss_dssp EEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHH
T ss_pred EEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHH
Confidence 4445799999999999999999999999 4688887773 22221
Q ss_pred -----ccchHHHHHHHHHHHHHcCC--CCCCCCccccc----cHHHHHHHHHHHHHcCCccc
Q psy2377 48 -----NRSTLSATQTIIDGMKWLGL--NYDEGPFYQTK----RINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 48 -----~r~~~~~~~~i~~~l~~lGi--~~d~~~~~qS~----~~~~y~~~~~~L~~~G~aY~ 98 (340)
......+.+.+.+.|+.||+ +|+. ++...+ +....+.+..+|.++|++|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r-~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 118 TFEDPINIVKYFMKAAKETFIRAGFSVDWSR-EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHTTTCCCCTTS-CCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceEecCC-CeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 11234455778899999997 5554 333333 56666777888999999984
No 70
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=98.13 E-value=1.5e-05 Score=77.13 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=78.3
Q ss_pred CCcchhhHHHhhhhcC----CCcEEEeCCCCCCcHHHHHHHHHHhC-----------------CCCCceEEecceecCCC
Q psy2377 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALG-----------------VTLPFYGHLPMVIDSNK 240 (340)
Q Consensus 182 G~ptY~la~vvDD~~~----githvIrG~D~~~~t~~q~~l~~aLg-----------------~~~p~~~H~pll~~~~g 240 (340)
|.++|.+--+.|=... +.++++-|.|-..|...=.-+.+.++ +++|.-.+.|+|.+.+|
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG 291 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG 291 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch
Confidence 4556665555544323 79999999999887776666655542 24566788999999999
Q ss_pred ceecccCCC-CChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhcccCcCCCCCccccHHHHHHHHHHHhh
Q psy2377 241 VKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (340)
Q Consensus 241 ~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~d~~kl~~~n~~~i~ 318 (340)
+||||+.++ +.|.+ .--+|..+..++... ++. .+..++..|. .++.+++..+-.+|-.
T Consensus 292 ~KMSKS~~naI~L~d---~~tsp~~i~qki~~~----~D~---~v~~~l~~ft----------~l~~~ei~~l~~~~~~ 350 (392)
T 1y42_X 292 AKFGKSAGNAIWLDP---YQTSVFDFYGYFVRR----SDQ---EVENLLKLFT----------FMPISEITKTMEEHIK 350 (392)
T ss_dssp CBTTBCSSSBCBSST---TTSCHHHHHHHHHTC----CTT---THHHHHHHHC----------CCCHHHHHHHHHHHHH
T ss_pred hhccCCCCCeeeccC---CCCCHHHHHHHHHcC----Cch---hHHHHHHHHH----------hCChhHHHHHHHHHhc
Confidence 999999874 55543 335899999988752 122 3445666665 2356666666666654
No 71
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=98.09 E-value=0.00011 Score=75.91 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=64.9
Q ss_pred CCcchhhHHHhhhhcCCCcEEEeCCCCCCcHHHHHHHHHHhCCC-CCceEEecceecC-CCc-eecccCC--CCChHHHH
Q psy2377 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDS-NKV-KISKRKE--ATDIMYYK 256 (340)
Q Consensus 182 G~ptY~la~vvDD~~~githvIrG~D~~~~t~~q~~l~~aLg~~-~p~~~H~pll~~~-~g~-KLSKR~g--~~~l~~l~ 256 (340)
|..+|-+--+.|=...+.+++.-|.|-..+.-.-.-+.+.+|.. .|...+.|+|.+- +|+ ||||+.+ ++.|.
T Consensus 167 g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~--- 243 (690)
T 3p0j_A 167 AQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME--- 243 (690)
T ss_dssp SCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT---
T ss_pred hhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc---
Confidence 66677766666666678999999999988777667778889876 5788899999887 885 9999986 45554
Q ss_pred HcCCCHHHHHHHHHH
Q psy2377 257 KKGFLPEAILNYLAR 271 (340)
Q Consensus 257 ~~G~~p~al~~~l~~ 271 (340)
-+|+.++.-+..
T Consensus 244 ---D~p~~i~kKI~~ 255 (690)
T 3p0j_A 244 ---DTEEDVARKIRQ 255 (690)
T ss_dssp ---CCHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHh
Confidence 367777777665
No 72
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.10 E-value=0.0011 Score=69.90 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=55.5
Q ss_pred CCCcEEEeCCCCCCc-HHHHHHHHHHh-CCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 197 MKITHVIRGDDHINN-TPRQINILKAL-GVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 197 ~githvIrG~D~~~~-t~~q~~l~~aL-g~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
..++..+-|.||+.. .....++..++ |.+++ .+.-+.++++.+|+|||||.|+ +++.++++. +.++++|.||+..
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~~ 621 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVS 621 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHH
T ss_pred CCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHhC
Confidence 346656779999743 22333333333 65444 4566677778899999999997 799999976 9999999999987
Q ss_pred C
Q psy2377 273 G 273 (340)
Q Consensus 273 G 273 (340)
+
T Consensus 622 ~ 622 (821)
T 1ile_A 622 A 622 (821)
T ss_dssp S
T ss_pred C
Confidence 6
No 73
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=96.94 E-value=0.002 Score=68.66 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=51.9
Q ss_pred CCCcEEEeCCCCCCc-HHHHHHHHH-HhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 197 MKITHVIRGDDHINN-TPRQINILK-ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 197 ~githvIrG~D~~~~-t~~q~~l~~-aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
..++..+-|.||+.. -.+.++... ..|..++ ....+.++++.+|+|||||.|+ ++..++++. +.++++|.|++.
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls 624 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS 624 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT
T ss_pred CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc
Confidence 345666789999742 222222212 2355443 3444488888899999999997 789999976 999999999997
No 74
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=96.46 E-value=0.0093 Score=63.14 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=54.4
Q ss_pred CCCcEEEeCCCCCC-cHHHHHHHH-HHhCCCCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy2377 197 MKITHVIRGDDHIN-NTPRQINIL-KALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (340)
Q Consensus 197 ~githvIrG~D~~~-~t~~q~~l~-~aLg~~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~l 272 (340)
...+..+-|.|.+. -..+.+... ...|..|. ...-+.++++.+|+|||||.|+ ++..+++++ +.++++|.||+..
T Consensus 480 ~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~ll~~ 558 (862)
T 1gax_A 480 YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIYL 558 (862)
T ss_dssp CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHH
T ss_pred CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHHHHHHhc
Confidence 34555677888764 333333332 33465332 4555678888999999999997 789999986 9999999999986
Q ss_pred C
Q psy2377 273 G 273 (340)
Q Consensus 273 G 273 (340)
+
T Consensus 559 ~ 559 (862)
T 1gax_A 559 A 559 (862)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0068 Score=63.81 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=52.5
Q ss_pred CCCcEEEeCCCCCCc-HHHHHHHHHH-hCC-CCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 197 MKITHVIRGDDHINN-TPRQINILKA-LGV-TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 197 ~githvIrG~D~~~~-t~~q~~l~~a-Lg~-~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
..++..+-|.||+.. ....+++..+ ++. +.| .+.|+.+++. +|+|||||.|+ +++.++++. +.++++|.||+.
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~ 679 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHh
Confidence 456666779999642 2222333233 232 235 4677777765 89999999997 789999986 999999999986
Q ss_pred hC
Q psy2377 272 LG 273 (340)
Q Consensus 272 lG 273 (340)
.+
T Consensus 680 ~~ 681 (810)
T 1wkb_A 680 LA 681 (810)
T ss_dssp HC
T ss_pred cC
Confidence 44
No 76
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.0093 Score=63.99 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=52.9
Q ss_pred CCCcEEEeCCCCCCc-HHHHHHHHHH-hCC-CCC-ceEEecceecCCCceecccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy2377 197 MKITHVIRGDDHINN-TPRQINILKA-LGV-TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (340)
Q Consensus 197 ~githvIrG~D~~~~-t~~q~~l~~a-Lg~-~~p-~~~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~ 271 (340)
..++..+-|.|++.. ....++...+ ++. +.| .+.|+.+++. +|+|||||.|+ ++..+++++ +.++++|.||+.
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~ 679 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHH-hChHHHHHHHHh
Confidence 456666779999643 1222222233 343 234 4677787766 89999999997 789999986 999999999986
Q ss_pred hC
Q psy2377 272 LG 273 (340)
Q Consensus 272 lG 273 (340)
.+
T Consensus 680 ~~ 681 (967)
T 1wz2_A 680 LA 681 (967)
T ss_dssp HC
T ss_pred CC
Confidence 55
No 77
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=95.68 E-value=0.01 Score=62.84 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred hcCCCcEEEeCCCCCCcHH----HHHHHHHHhCC---CCC--ceEEeccee-------cCCCc-----------------
Q psy2377 195 WDMKITHVIRGDDHINNTP----RQINILKALGV---TLP--FYGHLPMVI-------DSNKV----------------- 241 (340)
Q Consensus 195 ~~~githvIrG~D~~~~t~----~q~~l~~aLg~---~~p--~~~H~pll~-------~~~g~----------------- 241 (340)
..+.++..|-|.||....- ....++..+|+ ..| ...+..+++ +.+|+
T Consensus 540 ~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~ 619 (880)
T 4arc_A 540 YWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKG 619 (880)
T ss_dssp HHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTC
T ss_pred ccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhcccccccc
Confidence 3568888899999843221 12223344564 456 345557775 66776
Q ss_pred -------------------eecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 242 -------------------KISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 242 -------------------KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
|||||+|+ ++..+++++ |.++++|.|++..+
T Consensus 620 ~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~ 670 (880)
T 4arc_A 620 RIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFAS 670 (880)
T ss_dssp CEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS
T ss_pred ccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999997 789999987 99999999999875
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=94.90 E-value=0.046 Score=57.99 Aligned_cols=32 Identities=13% Similarity=-0.053 Sum_probs=29.1
Q ss_pred ceecccCCC-CChHHHHHcCCCHHHHHHHHHHhC
Q psy2377 241 VKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (340)
Q Consensus 241 ~KLSKR~g~-~~l~~l~~~G~~p~al~~~l~~lG 273 (340)
+|||||+|+ ++..+++++ |.++++|.|++..+
T Consensus 636 ~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~ 668 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-QGADIARITILFAA 668 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHS
T ss_pred HHhhccCCCcccHHHHHHH-cCccHHHHHHhccC
Confidence 999999997 789999987 99999999999854
No 79
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=93.17 E-value=0.25 Score=50.92 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=48.7
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHH-HHH-cCCcEEEEecCCc---------cccchHHHHHHHHHHHHHcCCCCCCCCc
Q psy2377 6 TRFAPSPTGNLHIGGIRTALFSWAY-ARH-FNGIFILRIEDTD---------INRSTLSATQTIIDGMKWLGLNYDEGPF 74 (340)
Q Consensus 6 ~RfaPsPtG~LHiG~~rtal~~~~~-ar~-~~G~~vlRieD~d---------~~r~~~~~~~~i~~~l~~lGi~~d~~~~ 74 (340)
+=|-| |||.|||||+...+...-. .+. .|+..++-|-|.. ....+..+......++.++|+++....+
T Consensus 385 ~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv 463 (690)
T 3p0j_A 385 CMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIV 463 (690)
T ss_dssp EEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEE
T ss_pred EEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEE
Confidence 44778 9999999999988762222 222 3556655555442 2245666777778889999998644577
Q ss_pred cccc
Q psy2377 75 YQTK 78 (340)
Q Consensus 75 ~qS~ 78 (340)
++|+
T Consensus 464 ~~S~ 467 (690)
T 3p0j_A 464 TENE 467 (690)
T ss_dssp EHHH
T ss_pred ECCc
Confidence 8886
No 80
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=41.03 E-value=16 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.7
Q ss_pred HhhcCCHHHHHHhHHHHHHhcC
Q psy2377 316 YIKSYDDKKLLNLIQPIIKKKK 337 (340)
Q Consensus 316 ~i~~~~~~~~~~~~~~~~~~~~ 337 (340)
.|+..+||++..++..||+.+|
T Consensus 82 vlkstdpeeltqrvreflktag 103 (112)
T 2lnd_A 82 VLKSTDPEELTQRVREFLKTAG 103 (112)
T ss_dssp EEECCCHHHHHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHHHHhcc
Confidence 5778899999999999999987
No 81
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.73 E-value=70 Score=19.12 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=19.6
Q ss_pred ChHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 251 DIMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 251 ~l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
.|..|.+.|++.+..+.+|..-++
T Consensus 7 ~i~~L~~mGf~~~~a~~AL~~~~~ 30 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALDAANG 30 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC
Confidence 367888999999988888887665
No 82
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=35.52 E-value=32 Score=33.41 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCccccccHHHHHHHHHHHHHcCCccc
Q psy2377 51 TLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY 98 (340)
Q Consensus 51 ~~~~~~~i~~~l~~lGi~~d~~~~~qS~~~~~y~~~~~~L~~~G~aY~ 98 (340)
++...+.+.++++.||+.+|.. +.-|.-...+.++++.|.++|.+|.
T Consensus 144 ~~~~l~~~~~~~~~l~V~fD~~-~~Ess~~~~~~~vv~~L~~~g~~~e 190 (464)
T 3fnr_A 144 KDKMLVLIKQNLEQAKIKIDSY-VSERSYYDALNATLESLKEHKGIYE 190 (464)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCE-EEGGGGSTTHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHhCCCceee-cCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 3445667888999999999862 2222222278899999999999996
No 83
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.62 E-value=1.5e+02 Score=20.27 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=27.4
Q ss_pred CCChHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHh
Q psy2377 249 ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYW 290 (340)
Q Consensus 249 ~~~l~~l~~~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~ 290 (340)
...|..|.++||+.+..+.+|..-|.. +++.+++|
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~-------~~e~A~~w 44 (64)
T 2crn_A 10 PSLLEPLLAMGFPVHTALKALAATGRK-------TAEEALAW 44 (64)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHHHTSC-------CHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-------CHHHHHHH
Confidence 357899999999999999999887642 45566665
No 84
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.49 E-value=1e+02 Score=18.90 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.2
Q ss_pred hHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 252 IMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 252 l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
|..|.+.||+.+..+.+|..-++
T Consensus 8 i~~L~~MGF~~~~a~~AL~~~~~ 30 (43)
T 2g3q_A 8 VEELSGMGFTEEEAHNALEKCNW 30 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCc
Confidence 67888999999988888877664
No 85
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=23.32 E-value=1.4e+02 Score=19.40 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=20.2
Q ss_pred ChHHHHHcCC-CHHHHHHHHHHhCC
Q psy2377 251 DIMYYKKKGF-LPEAILNYLARLGW 274 (340)
Q Consensus 251 ~l~~l~~~G~-~p~al~~~l~~lG~ 274 (340)
.|..|+++|| ..+..+.+|..-++
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGG 39 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC
Confidence 4889999999 88888888887775
No 86
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=23.14 E-value=2e+02 Score=20.34 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.5
Q ss_pred cCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhc
Q psy2377 258 KGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN 292 (340)
Q Consensus 258 ~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~ 292 (340)
.|++.|++|.||.+ . +++..||+..|.
T Consensus 8 ~~iTEe~VrryL~r-k-------PmTt~dLl~KFK 34 (73)
T 1i27_A 8 VQVTEDAVRRYLTR-K-------PMTTKDLLKKFQ 34 (73)
T ss_dssp SSCCHHHHHHHHHH-S-------CBCHHHHHHTSC
T ss_pred CCcCHHHHHHHHHc-C-------CccHHHHHHHHH
Confidence 47888999999983 1 267889999887
No 87
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.92 E-value=96 Score=21.01 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.0
Q ss_pred ChHHHHHcCCCHHHHHHHHHHhCC
Q psy2377 251 DIMYYKKKGFLPEAILNYLARLGW 274 (340)
Q Consensus 251 ~l~~l~~~G~~p~al~~~l~~lG~ 274 (340)
.|..|.+.||+.+..+.+|...++
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~~ 35 (63)
T 2dak_A 12 CVTTIVSMGFSRDQALKALRATNN 35 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC
Confidence 578899999999999999988775
No 88
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=20.28 E-value=1.6e+02 Score=21.44 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.2
Q ss_pred cCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhhc
Q psy2377 258 KGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN 292 (340)
Q Consensus 258 ~G~~p~al~~~l~~lG~~~~~~~~~~~~~~~~~f~ 292 (340)
.|++.|++|.||.+ . .++..||+..|.
T Consensus 17 ~~iTEe~VRryL~r-k-------PmTT~dLl~KFK 43 (82)
T 1nha_A 17 VQVTEDAVRRYLTR-K-------PMTTKDLLKKFQ 43 (82)
T ss_dssp CCCCHHHHHHHHHH-S-------CBCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHh-C-------CccHHHHHHHHH
Confidence 58899999999984 1 267889999997
No 89
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=20.24 E-value=1.5e+02 Score=19.21 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=19.9
Q ss_pred ChHHHHHcCC-CHHHHHHHHHHhCC
Q psy2377 251 DIMYYKKKGF-LPEAILNYLARLGW 274 (340)
Q Consensus 251 ~l~~l~~~G~-~p~al~~~l~~lG~ 274 (340)
.|..|+++|| ..+..+.+|..-++
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATGG 38 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC
Confidence 3788999999 88888888887775
Done!