RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2377
(340 letters)
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 559 bits (1443), Expect = 0.0
Identities = 172/345 (49%), Positives = 239/345 (69%), Gaps = 9/345 (2%)
Query: 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIID 60
M VRTRFAPSPTG LHIGG RTALF+W +ARH G FILRIEDTD RST A + I++
Sbjct: 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILE 61
Query: 61 GMKWLGLNYDEG-------PFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQ 113
G+KWLGL++DEG P+ Q++R++ Y E LL AYYCY + EE+E+ R++Q
Sbjct: 62 GLKWLGLDWDEGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQ 121
Query: 114 RSFGEKPRYNRIWRPEPGK-ILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKEL 172
R+ GE PRY+ R + + + PVIRFK P G + ++DL++G+I N EL
Sbjct: 122 RAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSEL 181
Query: 173 DDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHL 232
DD VI+R+DG PTYNF +DD M ITHVIRG+DH++NTP+QI + +ALG +P + HL
Sbjct: 182 DDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHL 241
Query: 233 PMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN 292
P+++ + K+SKR AT + Y+ G+LPEA+LNYLA LGWSHG++EIFS+++ F
Sbjct: 242 PLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGWSHGDQEIFSLEELIELF- 300
Query: 293 DCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKK 337
D + +SKSPA+F++KKL+WLN YI+ D ++L L+ P +++
Sbjct: 301 DLERVSKSPARFDIKKLDWLNGHYIRELDPEELAELLLPWHLEQE 345
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 465 bits (1198), Expect = e-164
Identities = 168/335 (50%), Positives = 238/335 (71%), Gaps = 3/335 (0%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VRTRFAPSPTG LHIGG RTALF++ +A+H G F+LRIEDTD+ R+ A + I++G+K
Sbjct: 2 VRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGLK 61
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
WLG+++DEGP+YQ++R++ Y + LL AY CY S E +E R++Q++ E PRY+
Sbjct: 62 WLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYD 121
Query: 124 RIWRP-EPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADG 182
R R +I ++ PV+RFK P G +++ND ++G+IT N ELDD VI+++DG
Sbjct: 122 RHCRNLHNEEIENALAKGIPPVVRFKIPQEGVVSFNDQVRGEITFQNSELDDFVILKSDG 181
Query: 183 IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242
PTYNF +DD+ MKITHVIRG+DHI+NTP+QI I KALG +P + HLPM++ + K
Sbjct: 182 SPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWKIPVFAHLPMILGEDGKK 241
Query: 243 ISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSP 301
+SKR AT IM +K++G+LPEA++NYLA LGWS ++E FS+++ F +SKSP
Sbjct: 242 LSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIF-SLNRVSKSP 300
Query: 302 AQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKK 336
A+F+ KKL+WLN YIK D++L L+ P ++KK
Sbjct: 301 AKFDWKKLQWLNAHYIKELPDEELFELLDPHLQKK 335
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 411 bits (1058), Expect = e-142
Identities = 147/342 (42%), Positives = 215/342 (62%), Gaps = 7/342 (2%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VRTRFAPSPTG LHIG RTAL ++ YAR + G FILRIEDTD R T A I++ ++
Sbjct: 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLE 69
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP-RY 122
WLGL++DEGP+YQ++R + Y+E L+ AY CY + EE+E R+ + + GE P Y
Sbjct: 70 WLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSY 129
Query: 123 NRIWRP-EPGKILPSIPINRKPVIRFKNPLY-GNITWNDLIKGKITISNKELDDLVIVRA 180
+R R + + + V+R K P+ + DL++G+I + K D VI+R
Sbjct: 130 DRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDF-VILRY 188
Query: 181 DGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240
DG PTYNF +DD M ITHV+RG+DH++NTPRQI + +ALG P Y HLP++++ +
Sbjct: 189 DGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG 248
Query: 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH--GNEEIFSIKQFCYWFNDCKYLS 298
K+SKRK A I Y+ +G+LP A+ N LA LG + EIFS+++ WF D +S
Sbjct: 249 KKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWF-DLTIVS 307
Query: 299 KSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKKKKYRI 340
KSPA F+ KKL+WLN Y++ + ++ ++P ++++ +
Sbjct: 308 KSPAAFDRKKLDWLNPRYMRVDPVEVVIENLKPHLEEEGATL 349
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 337 bits (867), Expect = e-116
Identities = 128/317 (40%), Positives = 190/317 (59%), Gaps = 13/317 (4%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VRTRFAPSPTG LHIG RTALF++ +A+++NG FILR +DTD R ++I++ +K
Sbjct: 2 VRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDLK 61
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFG--EKPR 121
WLG+ +DE P+YQ+ R + Y++ L+ AY C+ + EE+E R++Q + G E+PR
Sbjct: 62 WLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPR 121
Query: 122 YNR----IWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVI 177
Y+ ++ E K K +RFK P+ DL++G+I L D
Sbjct: 122 YDEECLRLFEEEMRKGEAE---GGKATLRFKIPMESPYVMRDLVRGRIKFEPSALHDRTG 178
Query: 178 VRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVID 237
++ DG PTY+F IDD M ITHV+RG++H++NTP+QI I +ALG +P + H + ++
Sbjct: 179 LKWDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLN 238
Query: 238 SNKVKISKRKEAT--DIMYYKKKGFLPEAILNYLARLGWS-HGNEEIFSIKQFCYWFNDC 294
+ K+SKRK + I K G PEA+LN+L R GW+ G E F+ ++ F D
Sbjct: 239 LDGTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSF-DL 297
Query: 295 KYLSKSPAQFNLKKLEW 311
+SKS F+ KKL+W
Sbjct: 298 NRVSKSLEAFDRKKLDW 314
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 315 bits (808), Expect = e-104
Identities = 131/342 (38%), Positives = 212/342 (61%), Gaps = 11/342 (3%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VR RFAPSPTGNLH+GG RTALF++ +AR G F+LRIEDTD+ RST + + ++ +K
Sbjct: 46 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLK 105
Query: 64 WLGLNYDEGP--------FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRS 115
WLGL++DEGP + Q++R Y + LL + + Y C+ + EE+E+ +++
Sbjct: 106 WLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAEL 165
Query: 116 FGEKPRYNRIWR-PEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDD 174
PRY W ++ + RF+ P G++ +DLI+G+++ + L D
Sbjct: 166 KKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGD 225
Query: 175 LVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234
V++R++G P YNFC A+DD M ITHVIR ++H+ NT RQ I KALG +P + H+ +
Sbjct: 226 FVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSL 285
Query: 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQFCYWFND 293
++ ++ K+SKR AT + +++ G+LP+A++NYLA LGW+ G E EIF++++ F
Sbjct: 286 ILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEKF-S 344
Query: 294 CKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKK 335
++KS A F+ KL+W+N +++ +++L+ L+ K
Sbjct: 345 IDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERWKS 386
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 297 bits (764), Expect = 2e-98
Identities = 132/322 (40%), Positives = 176/322 (54%), Gaps = 22/322 (6%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
V TRFAPSPTG LH+G RTAL +W YAR G FILRI+DTD+ RS I +
Sbjct: 1 MTVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAED 60
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPR 121
+KWLG+N+D F Q+ R +RY E L + Y CY + EE+E RK Q S G P
Sbjct: 61 LKWLGINWDR-TFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPI 119
Query: 122 YNR---------IWRPEPGKILPSIPINRKPVIRFKNPL-YGNITWNDLIKGKITISNKE 171
Y+R E RKP RFK L I+W+DLI+G+ +I
Sbjct: 120 YDRAALKLTEEEKAALEAE--------GRKPHWRFK--LDDEPISWDDLIRGEQSIDAAS 169
Query: 172 LDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231
L D V++RADG Y + +DD DM ITH+IRG+DH+ NT QI I +ALG P + H
Sbjct: 170 LSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAH 229
Query: 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWF 291
L ++ ++ +SKR I ++ G P AI + LARLG S E S+++ F
Sbjct: 230 LSLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESF 289
Query: 292 NDCKYLSKSPAQFNLKKLEWLN 313
D S++PA+F+ + LE LN
Sbjct: 290 -DLSSFSRAPAKFDPEDLERLN 310
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 300 bits (768), Expect = 2e-98
Identities = 155/335 (46%), Positives = 214/335 (63%), Gaps = 10/335 (2%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRFAPSPTG LHIG RTALF++ +ARH NG F+LRIEDTD RST A + I G+K
Sbjct: 5 VITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLK 64
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRY- 122
WLGL+++ +Q+KR N Y E LL N AYYC++ EEIE R++Q++ K +
Sbjct: 65 WLGLDWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIE--RQRQQALENKQHFI 122
Query: 123 -NRIWRPEPGKILPSI-PINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA 180
N WR + PSI P + KPVIR K P G+IT +D ++G++ I N +DD+V++RA
Sbjct: 123 FNSEWRDKD----PSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSHIDDMVLLRA 178
Query: 181 DGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240
DG TY +DD DM ITH+IRGDDH+ N RQ+ I +A G +P H+P++ ++
Sbjct: 179 DGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG 238
Query: 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKS 300
K+SKR A I YK G+LPE++ NYL RLGWSHG++EI S+ Q WFN L KS
Sbjct: 239 AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDWFN-LDSLGKS 297
Query: 301 PAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPIIKK 335
P++ + K+ LN Y++ D+ L + I+++
Sbjct: 298 PSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEILEQ 332
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 258 bits (662), Expect = 2e-83
Identities = 124/326 (38%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 7 RFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLG 66
RFAPSPTG++HIG +R A+F++ A+ N F++RIEDTD R+ + I++ + G
Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFG 62
Query: 67 LNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIW 126
+++D+ YQ++ + + ++ LLS A+ C+ S EE+E+ ++K ++ + RY+
Sbjct: 63 ISWDK-LVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTC 121
Query: 127 -RPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPT 185
E ++L N+ V+R K P +++ D IKG+++ E+D VI+RAD PT
Sbjct: 122 ENLEDDEVLNC---NKPFVVRLKKPN-HTMSFTDAIKGEVSFEPDEIDSFVILRADKTPT 177
Query: 186 YNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKIS 244
YNF A+DD I+ +IRG+DH++NTP+QI I +ALG Y HLP++++ K+S
Sbjct: 178 YNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGKKMS 237
Query: 245 KRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQF 304
KR A+ + + ++GFLP AI NYL LG + +EIF++++ WF D + +SKSPA+F
Sbjct: 238 KRDNASSVKWLLEQGFLPSAIANYLILLG-NKTPKEIFTLEEAIEWF-DIEKISKSPAKF 295
Query: 305 NLKKLEWLNNFYIKSYDDKKLLNLIQ 330
+LKKL ++N ++K DD++L L+
Sbjct: 296 DLKKLRFINREHLKMLDDERLSKLLG 321
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 217 bits (555), Expect = 2e-69
Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 23/276 (8%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
R RFAPSP+G LH G + AL S+ AR G +++RIED D R A I+ ++
Sbjct: 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
GL++D YQ++R Y ++ LL+ AY C + +EI + Y
Sbjct: 61 AYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAYPCQCTRKEI------AAAHDGGGIYP 114
Query: 124 RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNK-ELDDLVIVRADG 182
R LP P R R + P G I ++D ++G + D V+ RADG
Sbjct: 115 GTCRNG----LPGRPG-RPAAWRLRVPD-GVIAFDDRLQGPQQQDLAAAVGDFVLRRADG 168
Query: 183 IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242
+ Y +DD ITHV+RG D +++TPRQI + + LG+ P Y HLP+V++++ K
Sbjct: 169 LFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEK 228
Query: 243 ISKRKEAT--DIMYYKKKGFLPEAILNYLAR-LGWS 275
+SK+ A D P L R LG
Sbjct: 229 LSKQNGAPALDDSR-------PLPALLAALRFLGLP 257
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 208 bits (531), Expect = 2e-65
Identities = 90/277 (32%), Positives = 135/277 (48%), Gaps = 16/277 (5%)
Query: 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIID 60
MT RFAPSP+G LH G + AL SW AR G ++LRIED D R A I+
Sbjct: 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILA 62
Query: 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP 120
++WLGL++D YQ++R + Y ++ L + Y C+ S +EI + G
Sbjct: 63 DLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGG--G 120
Query: 121 RYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITI-SNKELDDLVIVR 179
Y R P R + P I ++D ++G+ + D V+ R
Sbjct: 121 IYPGTCRD------LLHGPRNPPAWRLRVP-DAVIAFDDRLQGRQHQDLALAVGDFVLRR 173
Query: 180 ADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSN 239
ADG+ Y +DD +THV+RG D +++TPRQI + + LG+ P Y HLP+V++++
Sbjct: 174 ADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNAD 233
Query: 240 KVKISKRKEATDIMYYKKKGFLPEAILNYLAR-LGWS 275
K+SK+ A + G P +L R LG
Sbjct: 234 GQKLSKQNGAPALD---AAG--PLPVLAAALRFLGQP 265
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 200 bits (510), Expect = 5e-63
Identities = 66/140 (47%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Query: 181 DGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240
DG PTY+ +DD M ITHVIRG++H+++TP+QI + +ALG P + HLP++++ +
Sbjct: 101 DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDG 160
Query: 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQFCYWFNDCKYLSK 299
K+SKRK T I Y+++G+LPEA+LNYLA LGWS + E F++++ F D + +SK
Sbjct: 161 KKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELF-DLERVSK 219
Query: 300 SPAQFNLKKLEWLNNFYIKS 319
SPA F+ +KL+WLN YI+
Sbjct: 220 SPAIFDPEKLDWLNGQYIRE 239
Score = 148 bits (377), Expect = 3e-43
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 8/105 (7%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
VRTRFAPSPTG LHIGG RTALF++ +AR G FILRIEDTD RS A + I++ +K
Sbjct: 2 VRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALK 61
Query: 64 WLGLNYDE--------GPFYQTKRINRYFEIINYLLSNDYAYYCY 100
WLGL++DE GP+ Q++R+ Y + LL + Y
Sbjct: 62 WLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKGDGFPTY 106
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 131 bits (332), Expect = 1e-36
Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 177 IVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVI 236
+++ G P YNF +DD M ITHV+RG+DH++NTP Q + +ALG P + H P ++
Sbjct: 88 LIKKGGYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLL 147
Query: 237 DSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCK 295
+ K+SKRK T + +++G+LPEA+ NYLA +GWS + E+F++++ F +
Sbjct: 148 LEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAF-SVE 206
Query: 296 YLSKSPAQFNLKKLEWLNNFYIK 318
++ + A F+ KLEWLN YI+
Sbjct: 207 RVNSADATFDWAKLEWLNREYIR 229
Score = 122 bits (309), Expect = 2e-33
Identities = 48/88 (54%), Positives = 63/88 (71%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRFAPSPTG LHIG RTALF++A+AR + G FILRIEDTD RS ++I++ +K
Sbjct: 2 VVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLK 61
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLL 91
WLGL++DEGP+ Q+ R + Y L+
Sbjct: 62 WLGLDWDEGPYRQSDRFDLYRAYAEELI 89
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 119 bits (299), Expect = 7e-30
Identities = 86/294 (29%), Positives = 132/294 (44%), Gaps = 35/294 (11%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V RFAP+P+G LHIG R A+ + YA+ ++G I+R +DTD R A I++ ++
Sbjct: 94 VVMRFAPNPSGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLE 153
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKK-------QRSF 116
WLG+ +DE YQ+ RI Y++ L+ AY C EE R + RS
Sbjct: 154 WLGVKWDE-VVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEACHCRDRSV 212
Query: 117 GEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPL-YGNITWNDLIKGKITISNKELDDL 175
E W ++L V+R K L + N D + +I K
Sbjct: 213 EENL---ERWE----EMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRI---VKTPHPR 262
Query: 176 VIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLP---FYGHL 232
+ PT +F AIDD + +THV+RG DHI+N +Q I + G P +G L
Sbjct: 263 TGDKYRVYPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGRL 322
Query: 233 PM-----VIDSNKVKISKRKEAT--------DIMYYKKKGFLPEAILNYLARLG 273
+ + S+ K R E + + +++G PEAI ++ +G
Sbjct: 323 KIDDVRALSTSSARKGILRGEYSGWDDPRLPTLRAIRRRGIRPEAIRKFMLSIG 376
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 94.5 bits (236), Expect = 3e-21
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTD--INRSTLSATQTIIDG 61
V RFAP+P+G LH+G R A+ + YA+ + G FILR EDTD R A I++
Sbjct: 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILED 161
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRK 111
+KWLG+ +DE Q+ R+ Y+E L+ AY C EE F++
Sbjct: 162 LKWLGVKWDE-VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEE---FKE 207
Score = 67.2 bits (165), Expect = 3e-12
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 184 PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPF---YGHLPM--VIDS 238
PTYNF A+DD + +THV+RG DHI+NT +Q I G P YG L + + S
Sbjct: 281 PTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLS 340
Query: 239 NKVKISKRKEATDIMYY-----------KKKGFLPEAILNYLARLG 273
KI K E + + +++G LPEAI + +G
Sbjct: 341 -TSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVG 385
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. These
enzymes function as monomers. Archaea and most bacteria
lack GlnRS. In these organisms, the
"non-discriminating" form of GluRS aminoacylates both
tRNA(Glu) and tRNA(Gln) with Glu, which is converted to
Gln when appropriate by a transamidation enzyme.
Length = 240
Score = 85.1 bits (211), Expect = 3e-19
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTD--INRSTLSATQTIIDG 61
V RFAP+P G LH+G R A+ + YA+ + G FILR +DTD R A I +
Sbjct: 2 VVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPED 61
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAY 97
++WLG+ +DE + RI Y+E L+ AY
Sbjct: 62 LEWLGVKWDE-VVIASDRIELYYEYARKLIEMGGAY 96
Score = 65.5 bits (160), Expect = 2e-12
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 184 PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMV-IDSNKVK 242
PT NF A+DD + +THV+RG DHI+NT +Q I + G P H + I+ K+
Sbjct: 109 PTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168
Query: 243 ISKRKEATDIMYY--------------KKKGFLPEAILNYLARLG 273
SK ++ + Y +++G PEAI +++ +G
Sbjct: 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVG 213
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 72.7 bits (178), Expect = 4e-14
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 30/238 (12%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P +G LHIG + AL + A + G + R +DT+ ++ Q I+D +
Sbjct: 53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLA 112
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
LG+++D GP Y + ++ +E L+ AY + EE++ K R G +Y
Sbjct: 113 TLGVSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQ----KCRFDGVPTKYR 168
Query: 124 RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITIS--NKELDDLVIVRAD 181
I E ++ + K G T ++ KI++ NK + D VI R +
Sbjct: 169 DISVEETKRLWNEMK---------KGSAEGQET---CLRAKISVDNENKAMRDPVIYRVN 216
Query: 182 GI------------PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLP 227
PTY+FC I D +TH +R +++ + + ALG+ P
Sbjct: 217 LTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKP 274
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 66.9 bits (163), Expect = 3e-12
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P G LHIG ++ ++ YA+++NG LR +DT+ + ++I ++
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
WLG ++ Y + + + L+ AY + EEI ++ R P N
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEI----REYRGTLTDPGKN 116
Query: 124 RIWR 127
+R
Sbjct: 117 SPYR 120
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 64.7 bits (158), Expect = 2e-11
Identities = 35/107 (32%), Positives = 52/107 (48%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P G LHIG ++ L ++ AR + G LR++DT+ + I D ++
Sbjct: 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVR 91
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFR 110
WLG ++ E +Y + R + L+ AY S EEI R
Sbjct: 92 WLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELR 138
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Gln to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
GlnRS contains the characteristic class I HIGH and
KMSKS motifs, which are involved in ATP binding. These
enzymes function as monomers. Archaea and most bacteria
lack GlnRS. In these organisms, the
"non-discriminating" form of GluRS aminoacylates both
tRNA(Glu) and tRNA(Gln) with Glu, which is converted to
Gln when appropriate by a transamidation enzyme.
Length = 238
Score = 62.3 bits (152), Expect = 3e-11
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P G LHIG + L ++ YA+ + G LR +DT+ + +I + +K
Sbjct: 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVK 61
Query: 64 WLGLNYD 70
WLG+
Sbjct: 62 WLGIKPY 68
Score = 31.1 bits (71), Expect = 0.60
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 23/111 (20%)
Query: 184 PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPF---YGHLPMVIDSNK 240
PTY+F I D ITH + + + P + AL + P + L +
Sbjct: 107 PTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLT---YT 163
Query: 241 VKISKRK-----------EATD-----IMYYKKKGFLPEAILNYLARLGWS 275
V +SKRK D + +++G PEAI ++ R G S
Sbjct: 164 V-MSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVS 213
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 55.4 bits (133), Expect = 2e-08
Identities = 70/266 (26%), Positives = 110/266 (41%), Gaps = 48/266 (18%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
+ TRF P P+G LHIG + AL + YAR + G ILR +DT+ ++ ++II+ +
Sbjct: 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLG 71
Query: 64 WLGLNYDEGPFYQTKRINRYFEIIN----YLLSNDYAYYCYSSVEEIESFRKKQRSFGEK 119
+ + D F + YFE I L+ AY + EE+ KK+R+ +
Sbjct: 72 KIEIKPDSVSF-----TSDYFEPIRCYAIILIEEGLAYMDDTPQEEM----KKERADRAE 122
Query: 120 PRYNRIWRPEPG----KILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITIS--NKELD 173
++ R PE K + S W ++ KI + N L
Sbjct: 123 SKH-RNQSPEEALEMFKEMCSGKEEGGA-------------W--CLRAKIDMQSDNGTLR 166
Query: 174 DLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKA 221
D V+ R + PTY+ I D +TH +R ++ + + I KA
Sbjct: 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKA 226
Query: 222 LGVTLPFYGHLPMVIDSNKVKISKRK 247
LG+ P + N V +SKRK
Sbjct: 227 LGLRRPRIHAFARMNFMNTV-LSKRK 251
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 55.2 bits (133), Expect = 2e-08
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P G LHIG + + A+ G LR +DT+ I + ++
Sbjct: 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVE 324
Query: 64 WLGLNYDEGPF---YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP 120
W+G PF Y + +E+ L+ +AY + + EEI+ +R+K+
Sbjct: 325 WMGWE----PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------ 374
Query: 121 RYNRIWRPEP 130
N WR P
Sbjct: 375 --NSPWRDRP 382
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 51.3 bits (123), Expect = 4e-07
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P+G LHIG + AL + +AR + G I+R +DT+ ++ + + I+ ++
Sbjct: 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIE 273
Query: 64 WLGLNYDE 71
LG+ YD
Sbjct: 274 TLGIKYDA 281
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 49.3 bits (119), Expect = 1e-06
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 42/128 (32%)
Query: 4 VRTRFAPSPTGNLHIG---------GIRTALFSWAYARHFNGIFILRIEDTD-------- 46
V TRF P P G LHIG G+ A+ + G LR +DT+
Sbjct: 30 VHTRFPPEPNGYLHIGHAKSICLNFGL---------AQDYGGKCNLRFDDTNPEKEDQEY 80
Query: 47 INRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEII----NYLLSNDYAYYCYSS 102
++ +I + ++WLG ++ Y + YF+ + L+ AY S
Sbjct: 81 VD--------SIKEDVRWLGFDWSGELRYASD----YFDQLYEYAVELIKKGKAYVDDLS 128
Query: 103 VEEIESFR 110
EEI +R
Sbjct: 129 AEEIREYR 136
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 42.3 bits (99), Expect = 3e-04
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 7 RFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLG 66
RF P P G LHIG ++ ++ AR G LR +DT+ I++ +KW+G
Sbjct: 55 RFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMG 114
Query: 67 LNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR-SFGEKPRYNR 124
D F + ++ E L+ + AY +S+ +E+ K+QR + P NR
Sbjct: 115 WKPDWVTF-SSDYFDQLHEFAVQLIKDGKAYVDHSTPDEL----KQQREQREDSPWRNR 168
>gnl|CDD|130464 TIGR01397, fliM_switch, flagellar motor switch protein FliM.
Members of this family are the flagellar motor switch
protein FliM. The family excludes FliM homologs that
lack an N-terminal region critical to interaction with
phosphorylated CheY. One set lacking this N-terminal
region is found in Rhizobium meliloti, in which the
direction of flagellar rotation is not reversible (i.e.
the FliM homolog does not act to reverse the motor
direction), and in related species. Another is found in
Buchnera, an obligate intracellular endosymbiont with
genes for many of the components of the flagellar
apparatus, but not, apparently, for flagellin iself
[Cellular processes, Chemotaxis and motility].
Length = 320
Score = 31.5 bits (72), Expect = 0.64
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 98 YCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV-----IRFKNPLY 152
YS++E I S ++ EK + WR + L ++P++ + V + + L
Sbjct: 214 LPYSTLEPIRSKLSQRFMQSEKVERDSSWRDALERELSTVPVDMRAVLGEVEVSLRQLL- 272
Query: 153 GNITWNDLIKGKITISNKELDDLVIVRADGIPTY 186
+L G + N ++ + V +R G P +
Sbjct: 273 ------NLQVGDVIPLNTDMPEEVSLRVGGRPKF 300
>gnl|CDD|217007 pfam02383, Syja_N, SacI homology domain. This Pfam family
represents a protein domain which shows homology to the
yeast protein SacI. The SacI homology domain is most
notably found at the amino terminal of the inositol
5'-phosphatase synaptojanin.
Length = 298
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 59 IDGMKWLGLN---YDEGPFYQTKRINRYFEIINYLLSNDYAYYCYS 101
I ++++ LN YD + K Y +++ LLS+ Y+ Y
Sbjct: 36 ITSVEFIPLNSSEYDSESDKKEKDEEHYLKLLKKLLSSGSFYFSYD 81
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 29.8 bits (68), Expect = 1.7
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 170 KELDDLVIVRADGIPTYNF---CAAIDD-WDMKITHVIR--GDDHINNTPRQINILKALG 223
+ D V+VR+DG TY F A D ++ +I G DH + R L+ LG
Sbjct: 126 GDDKDRVLVRSDGTYTY-FTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLG 184
Query: 224 VTLP------FYGHLPMVIDSNKVKISKRK 247
YG MV + K+S R
Sbjct: 185 YDEAKKLEHLLYG---MVNLPKEGKMSTRA 211
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 29.7 bits (68), Expect = 2.5
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 174 DLVIVRADGIPTYNFC----AAIDDWDMKITHVIR--GDDHINNTPRQINILKALG---V 224
D V++++DG TY F + ++ + VI G DH + R LKALG
Sbjct: 245 DRVLIKSDGTYTY-FTRDIAYHLYKFE-RFDRVIYVVGADHHGHFKRLKAALKALGYDPD 302
Query: 225 TLPFYGHLP--MVIDSNKVKISKRK 247
L H +V VK+S R
Sbjct: 303 ALEVLLHQMVGLVRGGEGVKMSTRA 327
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 28.2 bits (64), Expect = 7.2
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 10 PSPTGNLHIGGIRTALFSWAY 30
P+ +G+LHIG + FS+ +
Sbjct: 47 PTVSGSLHIGHV----FSYTH 63
>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of
small GTPases. Ran GTPase is involved in diverse
biological functions, such as nuclear transport, spindle
formation during mitosis, DNA replication, and cell
division. Among the Ras superfamily, Ran is a unique
small G protein. It does not have a lipid modification
motif at the C-terminus to bind to the membrane, which
is often observed within the Ras superfamily. Ran may
therefore interact with a wide range of proteins in
various intracellular locations. Like other GTPases, Ran
exists in GTP- and GDP-bound conformations that interact
differently with effectors. Conversion between these
forms and the assembly or disassembly of effector
complexes requires the interaction of regulator
proteins. The intrinsic GTPase activity of Ran is very
low, but it is greatly stimulated by a GTPase-activating
protein (RanGAP1) located in the cytoplasm. By contrast,
RCC1, a guanine nucleotide exchange factor that
generates RanGTP, is bound to chromatin and confined to
the nucleus. Ran itself is mobile and is actively
imported into the nucleus by a mechanism involving
NTF-2. Together with the compartmentalization of its
regulators, this is thought to produce a relatively high
concentration of RanGTP in the nucleus.
Length = 166
Score = 27.7 bits (62), Expect = 7.4
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 230 GHLPMVIDSNKVKISKRK-EATDIMYYKKKG 259
++P+V+ NKV I RK + I +++KK
Sbjct: 103 ENIPIVLCGNKVDIKDRKVKPKQITFHRKKN 133
>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 122
Score = 26.9 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 143 PVIRFKNPLYGNITWNDLIK 162
PV+ L G ITW DL+K
Sbjct: 102 PVVDENGQLIGIITWKDLLK 121
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 28.1 bits (62), Expect = 9.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 77 TKRINRYFEIINYLLS-NDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
K I ++ IN L ++Y C ++ E IE F KQ E N
Sbjct: 903 NKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKN 950
>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 26.8 bits (60), Expect = 9.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 235 VIDSNKVKISKRKEATDIMYYKKKGF 260
VI++ KV I+ +K TD YY+ G+
Sbjct: 56 VINAEKVVITGKKL-TDKKYYRHSGY 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.442
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,326,970
Number of extensions: 1821708
Number of successful extensions: 1759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 62
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)