RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2377
(340 letters)
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 275 bits (705), Expect = 3e-92
Identities = 111/311 (35%), Positives = 174/311 (55%), Gaps = 15/311 (4%)
Query: 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGM 62
+V TR APSPTG+ H+G ALF++A+AR G FI+RIEDTD R A + I+ +
Sbjct: 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 63 KWLGLNYD--------EGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
KWLGL+YD GP+ Q++R+ Y + LL +AY + + EE+E RK++
Sbjct: 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 115 SFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDD 174
+ + R E VIR K P G D ++G + N+E+ D
Sbjct: 121 GYDGRARNIPPEEAEER-----ARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175
Query: 175 LVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234
+V++++DG PTY+ +DD M +T VIR ++ + +TP + + +A G P + H+P+
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQFCYWFND 293
+ + +K KISKRK T + +YK +GFLPEA+ NYL +G+S + EIF++++F F
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAF-T 294
Query: 294 CKYLSKSPAQF 304
+ +S F
Sbjct: 295 WERVSLGGPVF 305
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 230 bits (587), Expect = 3e-74
Identities = 57/307 (18%), Positives = 114/307 (37%), Gaps = 26/307 (8%)
Query: 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMK 63
V TRF P P G LHIG ++ ++ A+ + G LR +DT+ + + ++I + ++
Sbjct: 20 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 79
Query: 64 WLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYN 123
WLG ++ Y + ++ L++ AY + E+I +R G+ Y
Sbjct: 80 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 139
Query: 124 RIWRPEPGKILPSIPINR----KPVIRFKNPL-YGNITWNDLIKGKITISNKELDDLVIV 178
E + + K +R K + I D + +I
Sbjct: 140 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRI---KFAEHHQTGN 196
Query: 179 RADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV-------------- 224
+ P Y+F I D ITH + + +N +L + +
Sbjct: 197 KWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNL 256
Query: 225 --TLPFYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE--E 280
T+ L +++ V+ I +++G+ +I + R+G + + E
Sbjct: 257 EYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIE 316
Query: 281 IFSIKQF 287
+ S++
Sbjct: 317 MASLESC 323
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 209 bits (532), Expect = 2e-66
Identities = 78/305 (25%), Positives = 127/305 (41%), Gaps = 24/305 (7%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDG 61
T RFAPSP+G LH G + AL S+ AR G +++RIED D R A +TI+
Sbjct: 1 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQ 60
Query: 62 MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPR 121
++ GL++D +Q++R + Y E + +L +YYC + I+S
Sbjct: 61 LEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLH 120
Query: 122 YNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRAD 181
+ +R + + L +D +I R D
Sbjct: 121 HGPDNAA----------------VRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRD 164
Query: 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV 241
G+ YN +DD +T ++RG D I T RQI++ + G +P Y HLP+ ++
Sbjct: 165 GLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGA 224
Query: 242 KISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNE-EIFSIKQFCYWFN---DCKYL 297
K+SK+ A + KG ++ L LG + FS++Q +
Sbjct: 225 KLSKQNHAPAL----PKGDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAV 280
Query: 298 SKSPA 302
+S
Sbjct: 281 PESAI 285
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 74.4 bits (181), Expect = 1e-15
Identities = 35/265 (13%), Positives = 65/265 (24%), Gaps = 19/265 (7%)
Query: 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDINRSTLSATQ 56
+P+G +H+G R ++ + I +D D R
Sbjct: 18 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVP 77
Query: 57 T--------IIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIES 108
I + ++ + ++ E + + YA Y E E
Sbjct: 78 QEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 137
Query: 109 FRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG-KITI 167
R + +R + V ++ I D K
Sbjct: 138 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKC 197
Query: 168 SNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHIN----NTPRQINILKALG 223
+ I + + + + G DH+ + I + G
Sbjct: 198 PEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYG 257
Query: 224 VTLPFYGHLPMV-IDSNKVKISKRK 247
P V I K K+S K
Sbjct: 258 KEAPLSLMYEFVGIKGQKGKMSGSK 282
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA
synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Length = 163
Score = 34.1 bits (77), Expect = 0.009
Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 305 NLKKLEWLNNFYIKSYDD-KKLLNLIQPIIKKKKYRI 340
+L+KL W+N YI+ +++ ++P +++
Sbjct: 1 DLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSW 37
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 31.4 bits (70), Expect = 0.13
Identities = 40/292 (13%), Positives = 79/292 (27%), Gaps = 23/292 (7%)
Query: 9 APSPTGNLHIGGIRTALFSWAYAR--HFNGIFILR---IED--TDINRSTLS------AT 55
+ +P LH+G +R A AR + G +L I+D + +
Sbjct: 15 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTW 74
Query: 56 QTIIDGMKWLGLNY-DEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQR 114
+ G Y + +R+ E + + L + + +
Sbjct: 75 DGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHAL 134
Query: 115 SFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDD 174
+ G + ++ + + F+ G ++ I E
Sbjct: 135 NARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPR-EGKYAGALVMDASPVIPGLEDPF 193
Query: 175 LVIVRADGIPTYNFCA--AIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG-H 231
V++R++G TY + A W M I +R + N + G
Sbjct: 194 FVLLRSNGTATY-YAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEE 252
Query: 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFS 283
V+D + A G+ A + S
Sbjct: 253 TINVVDVRQSHPQALVRAA----LALAGYPALAEKAHHLAYETVLLEGRQMS 300
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 30.3 bits (67), Expect = 0.36
Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 16/107 (14%)
Query: 10 PSPTGNLHIGGIRTALFSWAYARH-----FNGIFI-----------LRIEDTDINRSTLS 53
P G++H+G + + + + R+ FI L+ + I +
Sbjct: 11 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMI 70
Query: 54 ATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCY 100
+ + G N ++ T +
Sbjct: 71 GEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIK 117
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 28.5 bits (62), Expect = 1.4
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 10 PSPTGNLHIGGIRTALFSWAYARH--FNGIFILRIEDTDINRSTLSATQTIIDGMKWLGL 67
H+G T + + AR +G + TD +T+ + G
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTD------EHGETVYRAAQAAGE 65
Query: 68 NYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGE 118
+ + R R ++++ + + ++ KK G+
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGD 116
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 28.0 bits (61), Expect = 2.0
Identities = 27/215 (12%), Positives = 54/215 (25%), Gaps = 23/215 (10%)
Query: 10 PSPTGNLHIGGIRTALFSWAYARH-----FNGIFI-----------LRIEDTDINRSTLS 53
P P+G+LH+G ++ AR + + ++ +
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWT 101
Query: 54 A--TQTIIDGMKWLGLNYDEGPFYQTKRINRY---FEIINYLLSNDYAYYCYSSVEEIES 108
+ + ++ +G+ YD T Y I + AY V
Sbjct: 102 YANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPK 161
Query: 109 FRK--KQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKIT 166
+ E + P + L + + W + +K
Sbjct: 162 CQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQR 221
Query: 167 ISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITH 201
L D +I R T + +
Sbjct: 222 AWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVP 256
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 28.0 bits (61), Expect = 2.1
Identities = 34/291 (11%), Positives = 69/291 (23%), Gaps = 29/291 (9%)
Query: 10 PSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINRSTLSATQTIIDG--- 61
P+ TG+LH+G A R+ F +++ + I + + +G
Sbjct: 43 PNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTR 102
Query: 62 ----MKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFG 117
+ + I + + + + R +
Sbjct: 103 HDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYH 162
Query: 118 E----KPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNK--E 171
E + W P L + + W ++ K
Sbjct: 163 EGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLR 222
Query: 172 LDDLVIVRADGIPTYNFC-AAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230
D+ V + DW ++ R + P
Sbjct: 223 RGDIAFVPERWKKVNMDWLENVKDW-----NISRQLWWGHQIPAWYCEDCQAVNVPRPER 277
Query: 231 HLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEI 281
+L + K D+ + L L+ LGW E++
Sbjct: 278 YLEDPTSCEACGSPRLKRDEDVFDTW-----FSSALWPLSTLGWPEETEDL 323
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 269
Score = 27.3 bits (60), Expect = 2.5
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 134 LPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRAD--GIPTYNFCAA 191
L R PV+ ++ ++ +L + ++ +++ + +F A
Sbjct: 61 LIDYRSRR-PVVVIEHNEVTSMDELNLGLHVVRDNDN--KPFLMLSGPEPDLRWGDFSNA 117
Query: 192 IDDW--DMKITHVI 203
+ D + + I
Sbjct: 118 VVDLVEKFGVENTI 131
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 27.6 bits (60), Expect = 2.7
Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 7/126 (5%)
Query: 10 PSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINRSTLSATQTIIDGMKW 64
P GNLH+G + R+ F ++ + + + +
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 65 LGLNYDEGPFYQTKRINRYFEIINYL--LSNDYAYYCYSSVEEIESFRKKQRSFGEKPRY 122
++ + ++I + L + Y E + + +K
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLI 176
Query: 123 NRIWRP 128
+ +P
Sbjct: 177 YKGKKP 182
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 26.5 bits (57), Expect = 5.8
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 10 PSPTGNLHIGGIRTALFSWAYAR 32
P+ G H+G + + + R
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPR 69
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 348
Score = 26.0 bits (56), Expect = 6.8
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 9 APSPTGNLHIGGIRTALFSWAYAR--HFNG 36
+P+ H G +R+ + A G
Sbjct: 16 SPNIAKPFHAGHLRSTIIGGFLANLYEKLG 45
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 25.7 bits (55), Expect = 8.5
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 4/108 (3%)
Query: 189 CAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKE 248
AA+ +T+++ DD + + +N L ALGV+ +
Sbjct: 31 LAALAHGKTVLTNLLDSDD-VRHM---LNALTALGVSYTLSADRTRCEIIGNGGPLHAEG 86
Query: 249 ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKY 296
A ++ + E ++ D
Sbjct: 87 ALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALR 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.442
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,449,752
Number of extensions: 74571
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 30
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)