BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2378
(956 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. Marseille]
gi|151280873|gb|ABR89283.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
Length = 344
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 180/266 (67%), Positives = 211/266 (79%), Gaps = 3/266 (1%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
N N KY R+IS+APMM+ TDRHCRMFHRQITR++WLYTEM TT A+L G+ LDFN
Sbjct: 7 NTANGKYQGRRISVAPMMDWTDRHCRMFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFN 66
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EEHP+A Q+G +EP LAKSAK+ ++WGYDE+NLNCGCPS RVQ G FGA LM + LV
Sbjct: 67 EEEHPVALQLGGSEPADLAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLV 126
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+DC+KAMRD+V ID+TVKHRIGIDDI SYDFVRDFVGT++ AGC TFIVHARNA LK L+
Sbjct: 127 ADCVKAMRDAVSIDVTVKHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLS 186
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L+Y F Y LKKDFP LEIIINGG KT EID HL ++DGVMLGREAY NPF
Sbjct: 187 PKENREIPPLRYEFAYQLKKDFPALEIIINGGTKTVAEIDTHLQHVDGVMLGREAYHNPF 246
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDIIN 266
LMS FD YY + K TR +++
Sbjct: 247 LMSTFDARYYGDDATSK--TRAEVVQ 270
>gi|134095593|ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
gi|133739496|emb|CAL62547.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
Length = 338
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 174/249 (69%), Positives = 206/249 (82%), Gaps = 1/249 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
KR++S+APMM+ TDRHCRMFHRQITR++W YTEM TT A+L G+ LDFN EEHP+A
Sbjct: 8 KRRVSVAPMMDWTDRHCRMFHRQITRHTWFYTEMVTTGALLHGDVSRHLDFNHEEHPVAL 67
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G +EP LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAMR
Sbjct: 68 QLGGSEPADLAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEAALVADCVKAMR 127
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V+ID+TVKHRIGIDDI SYDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP
Sbjct: 128 DAVQIDVTVKHRIGIDDIASYDFVRDFVGTVAEAGCNTFIVHARNAVLKGLSPKENREIP 187
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y F Y LK+DFP+LEIIINGGIKT EID HL ++DGVMLGREAY NP+LMS FD
Sbjct: 188 PLRYEFAYQLKQDFPQLEIIINGGIKTLAEIDTHLVHVDGVMLGREAYHNPYLMSAFDAR 247
Query: 249 YYSNLPQYK 257
YY ++ K
Sbjct: 248 YYGDIAAPK 256
>gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1]
gi|300075667|gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 357
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 168/257 (65%), Positives = 208/257 (80%), Gaps = 1/257 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R +S+APMM+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ +EHP+A Q
Sbjct: 25 RTLSVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQ 84
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD
Sbjct: 85 LGGSEPADLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRD 144
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V ID+TVKHRIGID++ SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP
Sbjct: 145 AVSIDVTVKHRIGIDEVESYDFVRDFVGQIAEAGCQTFIVHARNAILKGLSPKENREIPP 204
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
LKY++ Y LKKDFP LEI+INGGIKT EID HL ++DGVMLGREAY NP+LM+ FD Y
Sbjct: 205 LKYDYAYQLKKDFPSLEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMAGFDARY 264
Query: 250 YSNLPQYKIPTRIDIIN 266
Y+ L +R ++I
Sbjct: 265 YAALEGGLQRSRAEVIE 281
>gi|409407337|ref|ZP_11255788.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
gi|386433088|gb|EIJ45914.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
Length = 329
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 165/249 (66%), Positives = 206/249 (82%), Gaps = 1/249 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ +EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+T
Sbjct: 61 DLAHSARLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRDAVSIDVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGIDD+ SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+LEI+INGGIKT EID HL ++DGVMLGREAY NP+LM++FD YY LP
Sbjct: 181 QLKQDFPDLEILINGGIKTLPEIDEHLRHVDGVMLGREAYHNPYLMASFDARYYGELPGG 240
Query: 257 KIPTRIDII 265
+ P+R ++I
Sbjct: 241 RQPSRAEVI 249
>gi|398832210|ref|ZP_10590374.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
gi|398223747|gb|EJN10082.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
Length = 328
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 164/248 (66%), Positives = 202/248 (81%), Gaps = 1/248 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDFN EEHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPAD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA++A++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 61 LAQAARLGQQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGID + SYDFVRDFVG ++ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGIDSVESYDFVRDFVGQIADAGCHTFIVHARNAILKGLSPKENREIPPLKYDYAYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFP+LEI+INGGIKT EID HL ++DGVMLGREAY NP+LM+ FD YY +LP +
Sbjct: 181 LKRDFPQLEILINGGIKTVAEIDAHLQHVDGVMLGREAYHNPYLMAGFDARYYGDLPHGR 240
Query: 258 IPTRIDII 265
+R +I
Sbjct: 241 QASREQVI 248
>gi|340788618|ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
gi|340553885|gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
Length = 338
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/252 (67%), Positives = 203/252 (80%), Gaps = 1/252 (0%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
M+ N NKR +S+APMM+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF
Sbjct: 1 MSTKNPLINKRLVSVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDF 60
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G +E LAKSAK+ Q+WGYDEINLNCGCPS RVQ G FGA LM + L
Sbjct: 61 SDVEHPVALQLGGSESADLAKSAKLGQEWGYDEINLNCGCPSERVQKGAFGACLMAEAEL 120
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC+KAMRD+V ID+TVKHRIGID SY+FVRDFVGTV+ AGC+TFIVHARNA LK L
Sbjct: 121 VADCVKAMRDAVSIDVTVKHRIGIDKTESYEFVRDFVGTVAQAGCQTFIVHARNAILKGL 180
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR+IP LKY + Y L +DFPELEIIING IKT +EID HL Y+DGVMLGREAY NP
Sbjct: 181 SPKENREIPPLKYEYAYQLARDFPELEIIINGAIKTTEEIDFHLQYVDGVMLGREAYHNP 240
Query: 240 FLMSNFDLNYYS 251
+LM++FD YY
Sbjct: 241 YLMADFDSRYYG 252
>gi|415944436|ref|ZP_11556234.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
gi|407758516|gb|EKF68332.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
Length = 323
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 204/250 (81%), Gaps = 1/250 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ +EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+T
Sbjct: 61 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRDAVSIDVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID + SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGIDQVESYDFVRDFVGQIADAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LKKDFPELEI+INGGIKT EID HL ++DGVMLGREAY NP+LM+ FD YY +L
Sbjct: 181 QLKKDFPELEILINGGIKTLPEIDEHLLHVDGVMLGREAYHNPYLMAAFDARYYGDLEGG 240
Query: 257 KIPTRIDIIN 266
+ P+R ++I
Sbjct: 241 RQPSRAEVIE 250
>gi|445495230|ref|ZP_21462274.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
gi|444791391|gb|ELX12938.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
Length = 341
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 163/243 (67%), Positives = 200/243 (82%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APMM+ TDRHCR+FHR I++++WLYTEM TT A++ G+ + L FN EEHP+A Q
Sbjct: 18 RRLSVAPMMDWTDRHCRVFHRHISQHTWLYTEMVTTGALVYGDVERHLRFNDEEHPVALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LA SAK+ +KWGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD
Sbjct: 78 LGGSDPADLATSAKLGEKWGYDEINLNCGCPSERVQKGAFGACLMAEPQLVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V ID+TVKHR+GID SYDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP
Sbjct: 138 AVSIDVTVKHRVGIDQTESYDFVRDFVGTVAEAGCTTFIVHARNAILKGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
LKY F Y LK+DFP+ EIIINGGIKT+ EID HL ++DGVMLGREAY NPF+M+ FD Y
Sbjct: 198 LKYEFAYQLKRDFPDFEIIINGGIKTEAEIDEHLKHLDGVMLGREAYHNPFVMAGFDQRY 257
Query: 250 YSN 252
Y +
Sbjct: 258 YGD 260
>gi|399017469|ref|ZP_10719661.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
gi|398103343|gb|EJL93514.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
Length = 322
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/249 (66%), Positives = 201/249 (80%), Gaps = 1/249 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ L+FN EEHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLYGDVGRHLNFNEEEHPVALQLGGSEPVD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 61 LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMAEPTLVADCVKAMRDAVSIDVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGIDD+ SYDFVRDFVG ++ AG +TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGIDDVESYDFVRDFVGKIAEAGSKTFIVHARNAVLKGLSPKENREIPPLKYDYAYR 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFPELEI+INGGIKT EID HL ++DGVMLGREAY NPFLM+ FD YY+ L
Sbjct: 181 LKRDFPELEILINGGIKTVAEIDEHLKHVDGVMLGREAYHNPFLMAGFDARYYAELDGGV 240
Query: 258 IPTRIDIIN 266
R ++I
Sbjct: 241 QANRSEVIE 249
>gi|83749666|ref|ZP_00946647.1| NIFR3-like protein [Ralstonia solanacearum UW551]
gi|83723668|gb|EAP70865.1| NIFR3-like protein [Ralstonia solanacearum UW551]
Length = 344
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 206/265 (77%), Gaps = 3/265 (1%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
M+ S N R++S+APMM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF
Sbjct: 1 MSAERSTPNPRRLSVAPMMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDF 60
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G +EP LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P L
Sbjct: 61 DETEHPVALQLGGSEPDDLAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKL 120
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC++AMRD+V I +TVKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L
Sbjct: 121 VADCVRAMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGL 180
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR+IP L+Y Y LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P
Sbjct: 181 SPKENREIPPLRYEVAYQLKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHP 240
Query: 240 FLMSNFDLNYYSNLPQYKIPTRIDI 264
LM+NFD YY PTR ++
Sbjct: 241 HLMANFDARYYGA--DTVAPTRAEV 263
>gi|398832720|ref|ZP_10590875.1| putative oxygen-independent coproporphyrinogen III oxidase
[Herbaspirillum sp. YR522]
gi|398222813|gb|EJN09174.1| putative oxygen-independent coproporphyrinogen III oxidase
[Herbaspirillum sp. YR522]
Length = 414
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/346 (52%), Positives = 232/346 (67%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E+ YL+AL D+EL+LP+I R+IHTIFIGGGTPSL+S GLD L+ +++ LL F +I
Sbjct: 70 EQAYLDALRTDLELALPLIWGRRIHTIFIGGGTPSLLSAAGLDRLMSDVRTLLPFDGDIE 129
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
IT+EANP TFE +KF +Y GINRLSIGIQSFN +L LGR HD +QA A+EIA
Sbjct: 130 ITMEANPGTFEADKFRAYRASGINRLSIGIQSFNAGHLQALGRIHDGQQALKAVEIAHAN 189
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL+YALP QTL++ D+ AI ++PPHLSLY LT+EPNT F KYPP ++P +D
Sbjct: 190 FDNFNLDLMYALPQQTLAQARADIETAIAFAPPHLSLYHLTLEPNTLFAKYPP-AVPDDD 248
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I L Y NYE+SAY++ G ++HNLNYW+FGDYL
Sbjct: 249 ASADMQDMIAQLTGAAGYGNYEVSAYARPGRRARHNLNYWQFGDYLGIGAGAHSKLSFPH 308
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G I + +IE+ L FEFMLN LRL DGFSPNLF ERTG
Sbjct: 309 RIVRQMRYKHPQAYLAQTAAGAPIQEEAEIERDALGFEFMLNTLRLVDGFSPNLFAERTG 368
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+++ IE +L AE+ G+L R++ I+PT GR FLNDLQ+IFL++
Sbjct: 369 MSLNRIEQQLNLAEQKGMLYRDHAVIRPTPLGRRFLNDLQEIFLSD 414
>gi|386333724|ref|YP_006029895.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum Po82]
gi|334196174|gb|AEG69359.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum Po82]
Length = 344
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 205/265 (77%), Gaps = 3/265 (1%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
M+ S N R++S+APMM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF
Sbjct: 1 MSAERSTPNPRRLSVAPMMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDF 60
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G +EP LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P L
Sbjct: 61 DETEHPVALQLGGSEPDDLAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKL 120
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC++AMRD+V I +TVKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L
Sbjct: 121 VADCVRAMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGL 180
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR+IP L+Y Y LK+DFP LEI++NGG++ ++ID HL ++DGVM+GREAY +P
Sbjct: 181 SPKENREIPPLRYEVAYQLKRDFPRLEILLNGGVQALEQIDTHLAHVDGVMIGREAYHHP 240
Query: 240 FLMSNFDLNYYSNLPQYKIPTRIDI 264
LM+NFD YY PTR ++
Sbjct: 241 HLMANFDARYYGA--DTVAPTRAEV 263
>gi|395761105|ref|ZP_10441774.1| tRNA-dihydrouridine synthase A [Janthinobacterium lividum PAMC
25724]
Length = 317
Score = 365 bits (936), Expect = 8e-98, Method: Composition-based stats.
Identities = 160/236 (67%), Positives = 195/236 (82%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHR+ITR++WLYTEM TT A++ G+ + L FN EEHP+A Q+G ++P
Sbjct: 1 MMDWTDRHCRKFHREITRHTWLYTEMVTTGALVYGDVERHLRFNEEEHPVALQLGGSDPT 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SAK+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V+ID+T
Sbjct: 61 DLATSAKLGQQWGYDEVNLNCGCPSERVQKGAFGACLMAEPQLVADCVKAMRDVVDIDVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGIDD SYDFVRDFVGTV+ AGC+TFIVHARNA LK L+PK+NR++P LKY++ Y
Sbjct: 121 VKHRIGIDDSESYDFVRDFVGTVADAGCKTFIVHARNAILKGLSPKENREVPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP+ E IINGGIKT EIDLHL ++DGVMLGREAY NP+LM+ FD YY +
Sbjct: 181 RLKRDFPQFEFIINGGIKTLDEIDLHLQHLDGVMLGREAYHNPYLMAQFDQRYYGD 236
>gi|194289932|ref|YP_002005839.1| tRNA-dihydrouridine synthase a [Cupriavidus taiwanensis LMG 19424]
gi|193223767|emb|CAQ69774.1| tRNA-dihydrouridine synthase A [Cupriavidus taiwanensis LMG 19424]
Length = 337
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 201/257 (78%), Gaps = 2/257 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
N R+IS+APMM+ TDRHCRMFHRQ++R++WLYTEM TT A+L G+ LDF+A EHP+A
Sbjct: 4 NPRRISVAPMMDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFDAAEHPVA 63
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA +AK+ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 64 LQLGGSEPADLAMAAKLGQQWGYAEINLNCGCPSERVQRGAFGACLMAEPELVADCVKAM 123
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+VEI +TVKHRIGID I YDFVRDFVG V+ AGC TFIVHARNA LK L+PK+NR+I
Sbjct: 124 RDAVEIPVTVKHRIGIDKIEHYDFVRDFVGKVAQAGCGTFIVHARNAILKGLSPKENREI 183
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L+Y Y LK++FPELEI+INGGI + EI HL ++DGVM+GREAY P++++ D
Sbjct: 184 PPLRYEVAYQLKREFPELEILINGGILSHDEIARHLEHVDGVMIGREAYHQPYILAEMDA 243
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y + +P+R+ +
Sbjct: 244 RFYGDA-SAPVPSRLAV 259
>gi|17546018|ref|NP_519420.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum GMI1000]
gi|17428313|emb|CAD15001.1| putative trna-dihydrouridine synthase protein [Ralstonia
solanacearum GMI1000]
Length = 344
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 204/265 (76%), Gaps = 3/265 (1%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
M+ S N R++S+APMM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF
Sbjct: 1 MSAERSTPNPRRLSVAPMMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDF 60
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G +EP LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P L
Sbjct: 61 DEAEHPVALQLGGSEPDDLAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKL 120
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+D +KAMRD+V I +TVKHRIGID I +YDFVRDFVG ++ AGC TFIVHARNA LK L
Sbjct: 121 VADGVKAMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGAIAEAGCETFIVHARNAILKGL 180
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR+IP L+Y VY LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P
Sbjct: 181 SPKENREIPPLRYEVVYQLKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHP 240
Query: 240 FLMSNFDLNYYSNLPQYKIPTRIDI 264
LM+ FD YY PTR ++
Sbjct: 241 HLMAGFDARYYGA--DAVAPTRAEV 263
>gi|241662836|ref|YP_002981196.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12D]
gi|240864863|gb|ACS62524.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12D]
Length = 346
Score = 361 bits (927), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 204/264 (77%), Gaps = 3/264 (1%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
N I K R++S+APMM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+
Sbjct: 4 NRIPMKSTPRRLSVAPMMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFD 63
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EHP+A Q+G +EP LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV
Sbjct: 64 EFEHPVALQLGGSEPDDLAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLV 123
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+ +KAMRD+V I +TVKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+
Sbjct: 124 AQGVKAMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLS 183
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L+Y VY LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P
Sbjct: 184 PKENREIPPLRYEVVYQLKRDFPHLEILLNGGVQTLEQIDAHLAHVDGVMIGREAYHHPH 243
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDI 264
LM+ FD YY + PTR ++
Sbjct: 244 LMAAFDARYYGA--GTEAPTRAEV 265
>gi|309782238|ref|ZP_07676967.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
gi|308919009|gb|EFP64677.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
Length = 346
Score = 361 bits (927), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 204/264 (77%), Gaps = 3/264 (1%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
N I K R++S+APMM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+
Sbjct: 4 NRIPMKSTPRRLSVAPMMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFD 63
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EHP+A Q+G +EP LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV
Sbjct: 64 EFEHPVALQLGGSEPDDLAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLV 123
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+ +KAMRD+V I +TVKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+
Sbjct: 124 AQGVKAMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLS 183
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L+Y VY LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P
Sbjct: 184 PKENREIPPLRYEVVYQLKRDFPHLEILLNGGVQTLEQIDAHLAHVDGVMIGREAYHHPH 243
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDI 264
LM+ FD YY + PTR ++
Sbjct: 244 LMAAFDARYYGA--GTEAPTRAEV 265
>gi|113868264|ref|YP_726753.1| tRNA-dihydrouridine synthase A [Ralstonia eutropha H16]
gi|113527040|emb|CAJ93385.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16]
Length = 345
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 154/257 (59%), Positives = 201/257 (78%), Gaps = 2/257 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCRMFHRQ++R++WLYTEM TT A+L G+ LDF+A EHP+A
Sbjct: 12 SPRRVSVAPMMDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFDAAEHPVA 71
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA +AK+ Q+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 72 LQLGGSEPADLAMAAKLGQQWGYAEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAM 131
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V+I +TVKHRIGID I YDFVRDFVG V+ AGC TFIVHARNA LK L+PK+NR+I
Sbjct: 132 RDAVDIPVTVKHRIGIDKIEHYDFVRDFVGRVAEAGCGTFIVHARNAILKGLSPKENREI 191
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L+Y Y LK++FPELEI+INGGI + E+ HL ++DGVM+GREAY P++++ D
Sbjct: 192 PPLRYEVAYQLKQEFPELEILINGGIVSYDEVAAHLEHVDGVMIGREAYHQPYVLAEMDA 251
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y + P+R+D+
Sbjct: 252 RFYGDA-SAPAPSRLDV 267
>gi|399021546|ref|ZP_10723643.1| putative oxygen-independent coproporphyrinogen III oxidase
[Herbaspirillum sp. CF444]
gi|398091319|gb|EJL81766.1| putative oxygen-independent coproporphyrinogen III oxidase
[Herbaspirillum sp. CF444]
Length = 418
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/348 (52%), Positives = 233/348 (66%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G+ E YL+AL D+E +LP+I RKI+++FIGGGTPSL+S GLD LL +I+ LL
Sbjct: 70 GSFPEDAYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAAGLDRLLSDIRTLLPMD 129
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+I IT+EANP TFE EKF SY GINRLSIGIQSFN+ +L LGR HD QA+ A+EI
Sbjct: 130 VDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSTHLAALGRIHDGDQARKAVEI 189
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL+YALP+Q++ E D+ AI +PPHLSLY LT+EPNT F KYPP ++
Sbjct: 190 AHANFDNFNLDLMYALPSQSVEEARRDIRTAIDCAPPHLSLYHLTLEPNTLFAKYPP-AV 248
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P D +A MQD IT+L Y++YE+SAY++ ++++HNLNYW+FGDYL
Sbjct: 249 PDEDASADMQDMITALTTAAGYQHYEVSAYARPKHQARHNLNYWQFGDYLGIGAGAHSKL 308
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN+I + +I + L FEFMLNALRL+DGF NLF
Sbjct: 309 SFPHRIVRQMRHKHPQTYLEKMRSGNAIQEEGEIGRDALGFEFMLNALRLQDGFPANLFA 368
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+ I I++ L AEK GLL R++ NI+PT GR FLNDLQ++FL
Sbjct: 369 ERTGMGINNIDAALNEAEKKGLLYRDHMNIRPTELGRRFLNDLQEMFL 416
>gi|427402986|ref|ZP_18893983.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
gi|425718169|gb|EKU81120.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
Length = 344
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 155/257 (60%), Positives = 206/257 (80%), Gaps = 1/257 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APMM+ TDRHCR+FHRQITR++WLYTEM TT A++ G+ + L ++ EHP+A Q
Sbjct: 19 RRLSVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALVYGDVERHLRYDDVEHPVALQ 78
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD
Sbjct: 79 LGGSDPADLAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEPQLVADCVKAMRD 138
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V ID+TVKHRIGID Y FVRDFVGT++ AGC+TFIVHARNA LK L+PK+NR+IP
Sbjct: 139 AVSIDVTVKHRIGIDYDEEYGFVRDFVGTIADAGCKTFIVHARNAVLKGLSPKENREIPP 198
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y Y LK++FP+LEI+INGGIK+ EI LHL ++DGVMLGREAY NP+ M+++D +
Sbjct: 199 LRYAVAYQLKREFPDLEILINGGIKSDDEIALHLQHVDGVMLGREAYHNPWTMADWDRRF 258
Query: 250 YSNLPQYKIPTRIDIIN 266
Y + + +R++++
Sbjct: 259 YGDAGAGRPRSRVEVLE 275
>gi|390572878|ref|ZP_10253071.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
gi|389935131|gb|EIM97066.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
Length = 333
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 202/254 (79%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR ++R++WLYTEM TT A++ G+ + L F A+E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIHGDVERHLAFTADEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V + +TVKHRIG+DD+ Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSVPVTVKHRIGVDDVEDYAFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NP+++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIIINGGIKTLDEVEAHLQHVDGVMLGREAYHNPYVLADVDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y + PTR
Sbjct: 248 RFYGSTD--AAPTR 259
>gi|340787014|ref|YP_004752479.1| coproporphyrinogen III oxidase-like protein, oxygen-independent
[Collimonas fungivorans Ter331]
gi|340552281|gb|AEK61656.1| coproporphyrinogen III oxidase-like protein, oxygen-independent
[Collimonas fungivorans Ter331]
Length = 418
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 230/348 (66%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G E++YL AL +D+E SLP+I RKI+TIFIGGGTPSL+S GLD L+ +++ LL
Sbjct: 70 GGFPEEEYLAALRLDLEASLPLIWGRKIYTIFIGGGTPSLMSAAGLDRLMSDVRSLLPLD 129
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
IT+EANP TFE+EKF SY GINRLSIGIQSFN ++L LGR HD +A+ A+EI
Sbjct: 130 GAAEITMEANPGTFEVEKFKSYRNSGINRLSIGIQSFNGRHLQALGRIHDDGEARRAVEI 189
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL+YALP+QTL E D+ AI ++PPHLSLY LT+EPNTYF KYPP+ +
Sbjct: 190 AHATFDNFNLDLMYALPSQTLEEAQQDVATAIGFAPPHLSLYHLTLEPNTYFAKYPPV-V 248
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDY----------- 869
P +D +A MQD I++ Y +YE+SAY++ G +++HNLNYW+FGDY
Sbjct: 249 PDDDASAEMQDMISAHTSAAGYGHYEVSAYAQAGRQARHNLNYWQFGDYLGIGAGAHSKL 308
Query: 870 -----------------------LGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
LGN + + +I + L FEFMLNALRL +GF NLF
Sbjct: 309 SFPHRVIRQMRYKQPKAYLEHSRLGNVVQEETEIGRDDLGFEFMLNALRLNNGFEVNLFS 368
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+ + IE L AE GLL R++K I+PT GR FLNDLQQ+FL
Sbjct: 369 ERTGLALNTIEKSLNQAEAKGLLYRDHKIIRPTELGRRFLNDLQQVFL 416
>gi|415902048|ref|ZP_11552023.1| Oxygen-independent coproporphyrinogen III oxidase [Herbaspirillum
frisingense GSF30]
gi|407763966|gb|EKF72538.1| Oxygen-independent coproporphyrinogen III oxidase [Herbaspirillum
frisingense GSF30]
Length = 414
Score = 358 bits (919), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 178/350 (50%), Positives = 233/350 (66%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G+ E+ YL+AL +D+E +LP+I RKI+TIFIGGGTPSL+S GLD LL +++ LL F
Sbjct: 66 GSFPEEDYLDALRLDLEQALPLIWGRKINTIFIGGGTPSLLSAAGLDRLLSDLRTLLPFD 125
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+I IT+EANP TFE +KF SY GINRLSIGIQSFN ++L LGR HD QA+ A+EI
Sbjct: 126 ADIEITMEANPGTFEADKFRSYRESGINRLSIGIQSFNAQHLEALGRIHDGDQARKAVEI 185
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL+YALP QTL+E D+ A+ ++P HLSLY LT+EPNT F ++PP ++
Sbjct: 186 AHSNFDNFNLDLMYALPRQTLAEAQADITTALAFAPSHLSLYHLTLEPNTLFARFPP-AV 244
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P D +A MQD I +L + Y NYE+SAY++ G ++HNLNYW+FGDYL
Sbjct: 245 PDEDASADMQDMIATLTSADGYANYEVSAYAQPGRRARHNLNYWQFGDYLGIGAGAHSKL 304
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G I + +I + L FEFMLNALRL +GFSPNLF
Sbjct: 305 SFPHRIVRQMRYKHPQAYLDQTRAGRPIQEEAEIGRDALGFEFMLNALRLTEGFSPNLFA 364
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+++ I +L AE+ G+L R++ I+PT GR FLNDLQ+IFL+
Sbjct: 365 ERTGMSLNQIGKQLDLAEQKGMLYRDHAVIRPTDLGRRFLNDLQEIFLSG 414
>gi|420249934|ref|ZP_14753167.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
gi|398063231|gb|EJL54981.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
Length = 333
Score = 358 bits (918), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 202/254 (79%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR ++R++WLYTEM TT A++ G+ + L F A+E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIHGDVERHLAFTADEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD V + +TVKHRIG+DD++ Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDVVSVPVTVKHRIGVDDVDDYAFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NP+++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIIINGGIKTLDEVEAHLQHVDGVMLGREAYHNPYVLADVDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y + PTR
Sbjct: 248 RFYGSTD--AAPTR 259
>gi|339326315|ref|YP_004686008.1| tRNA-dihydrouridine synthase A [Cupriavidus necator N-1]
gi|338166472|gb|AEI77527.1| tRNA-dihydrouridine synthase A [Cupriavidus necator N-1]
Length = 354
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 154/255 (60%), Positives = 199/255 (78%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
RKIS+APMM+ TDRHCRMFHRQ++R++WLYTEM TT A+L G+ LDF+A EHP+A Q
Sbjct: 23 RKISVAPMMDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFDAAEHPVALQ 82
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP LA +AK+ Q+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMR+
Sbjct: 83 LGGSEPADLAMAAKLGQQWGYAEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMRE 142
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V+I +TVKHRIGID I YDFVRDFVG V+ AGC TFIVHARNA LK L+PK+NR+IP
Sbjct: 143 AVDIPVTVKHRIGIDKIEHYDFVRDFVGRVAEAGCGTFIVHARNAILKGLSPKENREIPP 202
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y Y LK++FP LEI+INGGI + E+ HL ++DGVM+GREAY P++++ D +
Sbjct: 203 LRYEVAYQLKQEFPGLEILINGGIVSYDEMAAHLEHVDGVMIGREAYHQPYVLAEMDARF 262
Query: 250 YSNLPQYKIPTRIDI 264
Y + P+R+D+
Sbjct: 263 YGDA-SAPTPSRLDV 276
>gi|445498721|ref|ZP_21465576.1| oxygen-independent coproporphyrinogen III oxidase HemN
[Janthinobacterium sp. HH01]
gi|444788716|gb|ELX10264.1| oxygen-independent coproporphyrinogen III oxidase HemN
[Janthinobacterium sp. HH01]
Length = 419
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 181/344 (52%), Positives = 230/344 (66%), Gaps = 35/344 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E++YL+AL D+E++LP+I RKI+TIFIGGGTPSL+S GLD LL +++ LL +
Sbjct: 75 EQEYLDALRTDLEMALPLIWGRKIYTIFIGGGTPSLMSAAGLDRLLSDVRTLLPLDSDCE 134
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
IT+EANP TFE EKF SY GINRLSIGIQSFN+++L LGR HD +A+ A+EIA+
Sbjct: 135 ITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSRHLKALGRIHDDNEARRAVEIAQAN 194
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL+YALP+QTL E D+ A+ + PPHLSLY LT+EPNT F KYPP ++P +D
Sbjct: 195 FDNFNLDLMYALPSQTLEEARHDVETAMAFQPPHLSLYHLTMEPNTLFAKYPP-TLPDDD 253
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG-NSIAKSK----- 878
+A MQD I L N Y YE+SAY+K G+ ++HNLNYW+FGDYLG + A SK
Sbjct: 254 ASADMQDLIAELTAANGYGQYEVSAYAKEGHRARHNLNYWEFGDYLGIGAGAHSKLSFPH 313
Query: 879 ----------------------------KIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
+I + + FEFMLN LRL GF PNLF ERTG
Sbjct: 314 RILRQARYKQPKAYMEQVRLGAPVQDEYEIGRDDMGFEFMLNTLRLHGGFDPNLFSERTG 373
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+++ IE +L AE GLL R+ K IKPT G+ FLNDLQQ+FL
Sbjct: 374 LSLNAIEQQLNAAEAKGLLYRDYKLIKPTELGQRFLNDLQQMFL 417
>gi|427401114|ref|ZP_18892352.1| hypothetical protein HMPREF9710_01948 [Massilia timonae CCUG 45783]
gi|425720010|gb|EKU82937.1| hypothetical protein HMPREF9710_01948 [Massilia timonae CCUG 45783]
Length = 411
Score = 356 bits (913), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/348 (51%), Positives = 228/348 (65%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E+ YL+AL +D+E SLP+I RKIHT+FIGGGTPSL+S GLD L+ +++ LL +
Sbjct: 63 GELPEQAYLDALRLDLEQSLPLIWGRKIHTVFIGGGTPSLMSAAGLDRLMSDLRTLLPLE 122
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP TFE E+F SY GINRLSIGIQSF+ +L LGR HD +A A+EI
Sbjct: 123 LDAEITMEANPGTFEAERFKSYRASGINRLSIGIQSFHPAHLKALGRIHDGDEALRAVEI 182
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
AK F NFNLDL+YALP+QTL E DL A+ ++PPHLSLY LT+EPNT F KYPP ++
Sbjct: 183 AKNTFENFNLDLMYALPSQTLEEARRDLETALSFAPPHLSLYHLTMEPNTVFAKYPP-AL 241
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD I + Y++YE+SAY++ G ++HNLNYWKFGDYL
Sbjct: 242 PDDDLSADMQDMIAEVTGAAGYEHYEVSAYAQPGRRARHNLNYWKFGDYLGIGAGAHSKL 301
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN + + +I + + FEFMLNALRL GF PNLF
Sbjct: 302 SFPHRVLRQARFKQPASFIEAARRGNPVQEEHEIGRADMGFEFMLNALRLTGGFDPNLFG 361
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+NI I L AE GL+ R++K IKPT G+ FLNDLQ++FL
Sbjct: 362 ERTGMNIGAITKALNEAEAKGLIYRDHKLIKPTELGQRFLNDLQEMFL 409
>gi|186476399|ref|YP_001857869.1| YjbN family TIM-barrel protein [Burkholderia phymatum STM815]
gi|184192858|gb|ACC70823.1| TIM-barrel protein, yjbN family [Burkholderia phymatum STM815]
Length = 333
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 205/261 (78%), Gaps = 5/261 (1%)
Query: 4 INSKYN--KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
++SK N R++S+APMM+ TDRHCR FHR ++R++WLYTEM TT A++ G+ L F
Sbjct: 1 MSSKPNVSARRVSVAPMMDWTDRHCRSFHRTLSRHAWLYTEMVTTGALIHGDVARHLAFT 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
A+E P+A Q+G +E + LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV
Sbjct: 61 ADEAPVALQLGGSEREDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPELV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+DC+KAMRD+V + +TVKHRIG+DD+ Y FVRDFVGT++ AGC FIVHARNA LK L+
Sbjct: 121 ADCVKAMRDAVSVPVTVKHRIGVDDVEDYAFVRDFVGTIADAGCDVFIVHARNAILKGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP LKY++ Y LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NPF
Sbjct: 181 PKENREIPPLKYDYAYRLKRDFPQLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPF 240
Query: 241 LMSNFDLNYYSNLPQYKIPTR 261
++++ D +Y + PTR
Sbjct: 241 VLADVDARFYGSTD--AAPTR 259
>gi|409405948|ref|ZP_11254410.1| anaerobic coproporphyrinogen III oxidase oxidoreductase
[Herbaspirillum sp. GW103]
gi|386434497|gb|EIJ47322.1| anaerobic coproporphyrinogen III oxidase oxidoreductase
[Herbaspirillum sp. GW103]
Length = 414
Score = 355 bits (912), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 229/349 (65%), Gaps = 35/349 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G+ E+ YL+AL D+E SLP+I RKIHTIFIGGGTPSL+S GLD LL +++ LL F
Sbjct: 66 GSFPEEAYLDALRSDLEQSLPLIWGRKIHTIFIGGGTPSLLSAAGLDRLLSDLRTLLPFD 125
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+I I +EANP TFE +KF SY G+NRLSIGIQSFN+++L+ LGR HD QA+ A+EI
Sbjct: 126 NDIEINMEANPGTFEADKFRSYRDSGVNRLSIGIQSFNSRHLHALGRIHDGDQARKAVEI 185
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL+YALP QTL E D+ AI ++PPHLSLY LT+EPNT F KYPP +
Sbjct: 186 AHANFDNFNLDLMYALPQQTLEEARTDIATAIGFAPPHLSLYHLTLEPNTLFAKYPP-PV 244
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD I L Y NYE+SAY++ ++HNLNYW+FGDYL
Sbjct: 245 PDDDTSADMQDMIAELTNAAGYANYEVSAYAQPKRRARHNLNYWQFGDYLGIGAGAHSKL 304
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G I + +I + L FEFMLNALRL +GFSPNLF
Sbjct: 305 SFPHRIVRQMRYKHPQAYLDHARAGTHIQEEAEIGRDALGFEFMLNALRLTEGFSPNLFA 364
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955
ERTG+++ I L AE+ G+L R++ I+P+ GR FLNDLQ+IFL+
Sbjct: 365 ERTGMSLNQIGKALDLAEQKGMLYRDHALIRPSDLGRRFLNDLQEIFLS 413
>gi|413962803|ref|ZP_11402030.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
gi|413928635|gb|EKS67923.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
Length = 334
Score = 355 bits (911), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 202/261 (77%), Gaps = 5/261 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
SK + R++S+APMM+ TDRHCR HR ++R++WLYTEM TT A+L G+ L F E
Sbjct: 5 SKISPRRVSVAPMMDWTDRHCRSLHRLVSRHTWLYTEMVTTGALLYGDVARHLAFTPAEA 64
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G +EP LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+
Sbjct: 65 PVALQLGGSEPADLAKSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCV 124
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
KAMRD+V I +TVKHRIG+D + Y+FVRDFVGT++ AGC FIVHARNA LK L+PK+N
Sbjct: 125 KAMRDAVSIPVTVKHRIGVDTVEEYEFVRDFVGTIADAGCEVFIVHARNAILKGLSPKEN 184
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP LKY + Y LK+DFP+LEI INGGIKT E++ HL ++DGVMLGREAY NP++++
Sbjct: 185 REIPPLKYEYAYRLKRDFPQLEISINGGIKTLDEVEEHLKHVDGVMLGREAYHNPYVLAG 244
Query: 245 FDLNYY-SNLPQYKIPTRIDI 264
D +Y +N P +P+R +I
Sbjct: 245 VDTRFYGANTP---VPSREEI 262
>gi|237746180|ref|ZP_04576660.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
gi|229377531|gb|EEO27622.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
Length = 328
Score = 355 bits (910), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 152/246 (61%), Positives = 199/246 (80%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPI 66
Y KR ISIAPM++ TDRHCR FHR I+R +WLYTEM TT A+L G+ LDF+ EEHP+
Sbjct: 3 YKKRTISIAPMLDWTDRHCRYFHRLISRNTWLYTEMVTTGALLYGDVARHLDFSEEEHPV 62
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G +EP +LA+ AK+ +KWGYDEINLNCGCPS RVQ G FGA LM + LV+DC++A
Sbjct: 63 ALQLGGSEPAELAQCAKLGEKWGYDEINLNCGCPSERVQKGAFGACLMKESKLVADCVRA 122
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
M+D+V ID+TVKHRIGIDD+++YDFVRDF+G ++ AGC+TFIVHARNA LK L+PK+NR+
Sbjct: 123 MKDAVSIDVTVKHRIGIDDMHTYDFVRDFIGEIAGAGCQTFIVHARNAILKGLSPKENRE 182
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L+Y+ VY LKKDFP LEI++NGG++T +++ HL ++DGVM+GR AY P+ M+ FD
Sbjct: 183 IPPLRYDVVYQLKKDFPGLEILLNGGVETAGQVEEHLKHVDGVMIGRAAYHYPWRMAEFD 242
Query: 247 LNYYSN 252
+Y +
Sbjct: 243 ARFYGD 248
>gi|330816761|ref|YP_004360466.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
gi|327369154|gb|AEA60510.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
Length = 345
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 157/260 (60%), Positives = 198/260 (76%), Gaps = 3/260 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
+K R+IS+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F EE
Sbjct: 8 TKSTGRRISVAPMMDWTDRHCRSLHRSISRHTWLYTEMVTTGALLHGDVARHLAFMPEEA 67
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G +EP+ LAKSA++ + WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+
Sbjct: 68 PVALQLGGSEPEDLAKSARLGENWGYDEINLNCGCPSERVQRGAFGACLMNEPALVADCV 127
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
KAMRD+V I +TVKHRIG+D + Y FVRDFVGTV+ AGC FIVHARNA LK L+PK+N
Sbjct: 128 KAMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCEVFIVHARNAILKGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP LKY++ Y LK+DFP+LEI+INGGI T E++ HL ++DGVMLGREAY NPF+++
Sbjct: 188 REIPPLKYDYAYRLKQDFPDLEILINGGITTLDEVETHLQHVDGVMLGREAYHNPFVLAE 247
Query: 245 FDLNYYSNLPQYKIPTRIDI 264
D +Y PTR +I
Sbjct: 248 VDARFYGA--ARPAPTREEI 265
>gi|73541705|ref|YP_296225.1| tRNA-dihydrouridine synthase A [Ralstonia eutropha JMP134]
gi|72119118|gb|AAZ61381.1| tRNA-U16,U17-dihydrouridine synthase [Ralstonia eutropha JMP134]
Length = 341
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 153/259 (59%), Positives = 200/259 (77%), Gaps = 2/259 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHP 65
K + R+IS+APMM+ TDRHCR FHRQ++R++WLYTEM TT A+L G+ LDFNA EHP
Sbjct: 2 KVSPRRISVAPMMDWTDRHCRTFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFNAAEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G +EP LA +A++ Q+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+K
Sbjct: 62 VALQLGGSEPADLAVAARLGQQWGYAEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVK 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
AMRD+V I +TVKHRIGID + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR
Sbjct: 122 AMRDAVSIPVTVKHRIGIDKVEHYGFVRDFVGTVAQAGCETFIVHARNAILKGLSPKENR 181
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
+IP L+Y Y LK+DFP+LEI+INGGI + E+ HL +DGVM+GREAY P++++
Sbjct: 182 EIPPLRYEVAYQLKQDFPQLEILINGGIVSYDEMASHLENVDGVMIGREAYHQPYVLAEM 241
Query: 246 DLNYYSNLPQYKIPTRIDI 264
D +Y + + + +R+D+
Sbjct: 242 DGRFYGDA-EAPVRSRLDV 259
>gi|307729510|ref|YP_003906734.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1003]
gi|307584045|gb|ADN57443.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1003]
Length = 333
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 149/245 (60%), Positives = 195/245 (79%), Gaps = 1/245 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V + +TVKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDAVGVPVTVKHRIGVDAVEDYSFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEI+INGGIKT E++ HL ++DGVMLGREAY NP+L+++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIVINGGIKTLDEVEAHLQHVDGVMLGREAYHNPYLLADVDA 247
Query: 248 NYYSN 252
+Y +
Sbjct: 248 RFYGS 252
>gi|295676394|ref|YP_003604918.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1002]
gi|295436237|gb|ADG15407.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1002]
Length = 333
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD V + +TVKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDVVSVPVTVKHRIGVDTVEEYGFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEIIINGGIKT E+D HL ++DGVMLGREAY NP+++++ D
Sbjct: 188 PPLKYDYAYQLKRDFPQLEIIINGGIKTLDEVDTHLQHVDGVMLGREAYHNPYVLADVDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y + PTR
Sbjct: 248 RFYGS--TQSPPTR 259
>gi|167582008|ref|ZP_02374882.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis TXDOH]
Length = 339
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 152/254 (59%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP +LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPAELAHSARLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D I Y FVRDFVGTV+SAGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAIEDYAFVRDFVGTVASAGCEVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEI+INGGI T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIVINGGITTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y PTR
Sbjct: 248 RFYGA--TEPAPTR 259
>gi|207743351|ref|YP_002259743.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum
IPO1609]
gi|206594748|emb|CAQ61675.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum
IPO1609]
Length = 327
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 153/248 (61%), Positives = 195/248 (78%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +T
Sbjct: 61 DLAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 121 VKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 181 QLKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADT 238
Query: 257 KIPTRIDI 264
PTR ++
Sbjct: 239 VAPTRAEV 246
>gi|83721523|ref|YP_443015.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|167620175|ref|ZP_02388806.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis Bt4]
gi|257139245|ref|ZP_05587507.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|83655348|gb|ABC39411.1| dihydrouridine synthase [Burkholderia thailandensis E264]
Length = 339
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 152/254 (59%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP +LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPAELAHSARLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D I Y FVRDFVGTV+SAGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAIEDYAFVRDFVGTVASAGCEVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEI+INGGI T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIVINGGITTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y PTR
Sbjct: 248 RFYGA--TEPAPTR 259
>gi|237748250|ref|ZP_04578730.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
gi|229379612|gb|EEO29703.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
Length = 330
Score = 353 bits (905), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 154/256 (60%), Positives = 198/256 (77%), Gaps = 1/256 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPI 66
Y KR IS+APM++ TDRHCR FHR I+R++WLYTEM TT A+L G+ LDF+ EEHPI
Sbjct: 6 YKKRTISVAPMLDWTDRHCRYFHRLISRHTWLYTEMVTTGALLFGDVARHLDFSEEEHPI 65
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G +EP LA+ A++ +KWGYDEINLNCGCPS RVQ G FGA LM++ LV++C+KA
Sbjct: 66 ALQLGGSEPGDLAQCARLGEKWGYDEINLNCGCPSERVQKGAFGACLMSESTLVANCVKA 125
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
M+D+V ID+TVKHRIGID SYDFVRDF+G V+ AGC+TFIVHARNA LK L+P++NR+
Sbjct: 126 MQDAVSIDVTVKHRIGIDKNESYDFVRDFIGEVAEAGCKTFIVHARNAILKGLSPRENRE 185
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L+Y VY LKKDFPELEI++NGGI+T E+ H+ ++DGVM+GR AY P+ M+ FD
Sbjct: 186 IPPLRYEVVYQLKKDFPELEILLNGGIETADEVGEHIKHVDGVMIGRAAYHYPYRMAEFD 245
Query: 247 LNYYSNLPQYKIPTRI 262
+Y + P +
Sbjct: 246 ARFYDDPTTATTPADV 261
>gi|237812120|ref|YP_002896571.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
gi|237505677|gb|ACQ97995.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
Length = 439
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 108 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 167
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 168 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 227
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 228 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 287
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 288 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 347
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 348 RFYGA--SAPAPTREEV 362
>gi|323526215|ref|YP_004228368.1| hypothetical protein BC1001_1876 [Burkholderia sp. CCGE1001]
gi|323383217|gb|ADX55308.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1001]
Length = 333
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/245 (60%), Positives = 194/245 (79%), Gaps = 1/245 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPHDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD V + +TVKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDVVSVPVTVKHRIGVDAVEDYSFVRDFVGTIAQAGCEVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEI+INGGIKT E++ HL ++DGVMLGREAY NP+L+++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIVINGGIKTLDEVETHLQHVDGVMLGREAYHNPYLLADVDA 247
Query: 248 NYYSN 252
+Y +
Sbjct: 248 RFYGS 252
>gi|121600739|ref|YP_993040.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|251768090|ref|ZP_04820399.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
gi|121229549|gb|ABM52067.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|243060848|gb|EES43034.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
Length = 436
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 105 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 164
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 165 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 224
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 225 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 284
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 285 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 344
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 345 RFYGA--SAPAPTREEV 359
>gi|217423368|ref|ZP_03454869.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
gi|217393226|gb|EEC33247.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
Length = 439
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 108 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 167
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 168 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 227
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 228 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 287
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 288 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 347
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 348 RFYGA--SAPAPTREEV 362
>gi|242317073|ref|ZP_04816089.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
gi|242140312|gb|EES26714.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
Length = 439
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 108 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 167
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 168 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 227
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 228 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 287
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 288 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 347
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 348 RFYGA--SAPAPTREEV 362
>gi|238563470|ref|ZP_00438839.2| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
gi|238520653|gb|EEP84111.1| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
Length = 439
Score = 352 bits (904), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 108 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 167
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 168 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 227
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 228 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 287
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 288 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 347
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 348 RFYGA--SAPAPTREEV 362
>gi|254179915|ref|ZP_04886514.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
gi|184210455|gb|EDU07498.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
Length = 339
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 150/257 (58%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL Y+DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRYVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 248 RFYGA--SAPAPTREEV 262
>gi|76809017|ref|YP_333391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710b]
gi|76578470|gb|ABA47945.1| dihydrouridine synthase [Burkholderia pseudomallei 1710b]
Length = 442
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 111 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 170
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 171 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 230
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 231 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 290
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 291 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 350
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 351 RFYGA--SAPAPTREEV 365
>gi|187923745|ref|YP_001895387.1| tRNA-dihydrouridine synthase A [Burkholderia phytofirmans PsJN]
gi|187714939|gb|ACD16163.1| TIM-barrel protein, yjbN family [Burkholderia phytofirmans PsJN]
Length = 333
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 150/244 (61%), Positives = 193/244 (79%), Gaps = 1/244 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F EE P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSLHRVISRHTWLYTEMVTTGALLHGDVPRHLAFTPEEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V + +TVKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSVPVTVKHRIGVDAVEEYGFVRDFVGTIAEAGCNVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY + Y LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NP+++++ D
Sbjct: 188 PPLKYEYAYQLKRDFPQLEIIINGGIKTLDEVEAHLEHVDGVMLGREAYHNPYVLADVDA 247
Query: 248 NYYS 251
+Y
Sbjct: 248 RFYG 251
>gi|393778283|ref|ZP_10366562.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
gi|392714749|gb|EIZ02344.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
Length = 362
Score = 352 bits (903), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 152/257 (59%), Positives = 197/257 (76%), Gaps = 3/257 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
++ N R++S+APM++ TDRHCR FHRQ++R++WLYTEM TT A+L G+ L F+A EH
Sbjct: 31 ARANPRRVSVAPMLDWTDRHCRYFHRQLSRHTWLYTEMVTTGALLHGDVARHLAFDAHEH 90
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G +EP LA +AK+ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+D +
Sbjct: 91 PVALQLGGSEPADLAAAAKLGEQWGYAEINLNCGCPSERVQRGAFGACLMAEPALVADGV 150
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
+AMRD+V I +TVKHRIGID + Y FVRDFVGTV+ AGC FIVHARNA LK L+PK+N
Sbjct: 151 RAMRDAVSIPVTVKHRIGIDAVEEYAFVRDFVGTVAQAGCNVFIVHARNAILKGLSPKEN 210
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP LKY Y LK+DFP+LEI+INGGI T + +D HL ++DGVM+GREAY NP+ ++
Sbjct: 211 REIPPLKYEVAYQLKRDFPDLEIVINGGIDTLEAMDAHLRHVDGVMIGREAYHNPYFLAA 270
Query: 245 FDLNYYSNLPQYKIPTR 261
FD +Y +PTR
Sbjct: 271 FDERFYGA--AEPLPTR 285
>gi|254177532|ref|ZP_04884187.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
gi|160698571|gb|EDP88541.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
Length = 339
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 150/257 (58%), Positives = 199/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTRIDI 264
+YS PTR ++
Sbjct: 248 RFYSA--SAPAPTREEV 262
>gi|377820579|ref|YP_004976950.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
gi|357935414|gb|AET88973.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
Length = 334
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 154/258 (59%), Positives = 199/258 (77%), Gaps = 5/258 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
SK + R++S+APMM+ TDRHCR HR ++R++WLYTEM TT A+L G+ L F E
Sbjct: 5 SKISPRRVSVAPMMDWTDRHCRSLHRLVSRHAWLYTEMVTTGALLYGDVARHLAFTPAEA 64
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G +EP LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+
Sbjct: 65 PVALQLGGSEPADLAKSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCV 124
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
KAMRD+V I +TVKHRIG+D + Y+FVRDFVGT++ AGC FIVHARNA LK L+PK+N
Sbjct: 125 KAMRDAVSIPVTVKHRIGVDTVEDYEFVRDFVGTIADAGCEVFIVHARNAILKGLSPKEN 184
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP LKY + Y LK+DFP LEI INGGIKT E++ HL ++DGVMLGREAY NP++++
Sbjct: 185 REIPPLKYEYAYRLKRDFPHLEISINGGIKTLDEVEEHLKHVDGVMLGREAYHNPYVLAG 244
Query: 245 FDLNYY-SNLPQYKIPTR 261
D +Y ++ P +P+R
Sbjct: 245 VDTRFYGADTP---VPSR 259
>gi|344170016|emb|CCA82390.1| tRNA-dihydrouridine synthase A [blood disease bacterium R229]
Length = 326
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 152/247 (61%), Positives = 196/247 (79%), Gaps = 3/247 (1%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEMEHPVALQLGGSEPGD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 61 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVKAMRDTVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 121 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFP+LEI++NGG++ ++ID HL ++DGVM+GREAY++P LM++FD YY
Sbjct: 181 LKRDFPQLEILLNGGVQALEQIDAHLAHVDGVMIGREAYRHPHLMASFDARYYG--ADTV 238
Query: 258 IPTRIDI 264
PTR ++
Sbjct: 239 APTRAEV 245
>gi|167836742|ref|ZP_02463625.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 339
Score = 351 bits (901), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 149/254 (58%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA +AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHAAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D ++ Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDSVDDYAFVRDFVGTVAAAGCEVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQLEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y PTR
Sbjct: 248 RFYGA--TAPAPTR 259
>gi|421888439|ref|ZP_16319534.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum K60-1]
gi|378966249|emb|CCF96282.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum K60-1]
Length = 327
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 150/235 (63%), Positives = 190/235 (80%), Gaps = 1/235 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +T
Sbjct: 61 DLAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 121 VKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 181 QLKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG 235
>gi|254197994|ref|ZP_04904416.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
gi|169654735|gb|EDS87428.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
Length = 377
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 46 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 105
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 106 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 165
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 166 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 225
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 226 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 285
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 286 RFYGA--SAPAPTREEV 300
>gi|134282264|ref|ZP_01768969.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
gi|134246302|gb|EBA46391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
Length = 379
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 48 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 107
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 108 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 167
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 168 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 227
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 228 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 287
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 288 RFYGA--SAPAPTREEV 302
>gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen III oxidase oxidoreductase
[Herbaspirillum seropedicae SmR1]
gi|300074236|gb|ADJ63635.1| anaerobic coproporphyrinogen III oxidase oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 414
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/346 (50%), Positives = 226/346 (65%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E++YL+AL +D+E +LP+I RKI++IFIGGGTPSL+S GLD LL +++ LL +I
Sbjct: 70 EQEYLDALRLDLEQALPLIWGRKIYSIFIGGGTPSLLSAAGLDRLLSDLRTLLPLDADIE 129
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
IT+EANP TFE +KF SY GINRLSIGIQSFN+ +L LGR HD QA A+EIA
Sbjct: 130 ITMEANPGTFEADKFRSYRDSGINRLSIGIQSFNSAHLQALGRIHDGGQAHQAVEIAHAN 189
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL+YALP QTL + D+ AI ++PPHLSLY LT+EPNT F K+PP ++P D
Sbjct: 190 FDNFNLDLMYALPQQTLEQARTDIQTAIDFAPPHLSLYHLTLEPNTLFAKFPP-AVPDED 248
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I L Y NYE+SAY++ G ++HNLNYW+FGDYL
Sbjct: 249 TSADMQDMIGELTTQAGYGNYEVSAYAQPGRRARHNLNYWQFGDYLGIGAGAHSKLSFPH 308
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G I + +I + L FEFMLNALRL +GF PNLF ERTG
Sbjct: 309 RIVRQMRYKHPQAYLQHIKAGTHIQEEAEIGRDALGFEFMLNALRLTEGFPPNLFAERTG 368
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + I +L AE+ G+L R++ I+PT GR FLNDLQ+IFL+
Sbjct: 369 LALNQIGKQLDLAERKGMLYRDHALIRPTPLGRRFLNDLQEIFLSG 414
>gi|34496379|ref|NP_900594.1| tRNA-dihydrouridine synthase A [Chromobacterium violaceum ATCC
12472]
gi|34102232|gb|AAQ58598.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 347
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 154/257 (59%), Positives = 203/257 (78%), Gaps = 3/257 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R F RQITR++WLYTEM TT A+L G+ L F+ EHP+A Q
Sbjct: 26 RRLSVAPMLDWTDRHYRYFARQITRHTWLYTEMVTTGALLNGDVARHLRFDEAEHPVALQ 85
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP +LA AK+ Q+WGYDE+NLN GCPS RVQ G FGA LM +P LVSDC+KAMRD
Sbjct: 86 LGGSEPAELATCAKLAQQWGYDEVNLNVGCPSERVQKGAFGACLMAEPQLVSDCVKAMRD 145
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V+ID+TVKHRIGID I YD++R+FV TV+ AGCRTFIVHARNA LK L+PK+NR+IP
Sbjct: 146 AVDIDVTVKHRIGIDQIEHYDYLREFVDTVAEAGCRTFIVHARNAILKGLSPKENREIPP 205
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
LKY++VY LK++ P+LEI+INGG+KT EI HL ++DGVM+GREAY NP+LM+++D +
Sbjct: 206 LKYDYVYRLKRERPDLEILINGGVKTNAEIAEHLKHVDGVMVGREAYHNPWLMADWDALF 265
Query: 250 YSNLPQYKIPTRIDIIN 266
Y + + P R+ ++
Sbjct: 266 YGD--ETARPERVAVVE 280
>gi|421897245|ref|ZP_16327613.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum MolK2]
gi|206588451|emb|CAQ35414.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum MolK2]
Length = 327
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 152/248 (61%), Positives = 194/248 (78%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHRQI+ ++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRYFHRQISSHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +T
Sbjct: 61 DLAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 121 VKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 181 QLKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADT 238
Query: 257 KIPTRIDI 264
PTR ++
Sbjct: 239 VAPTRAEV 246
>gi|254258242|ref|ZP_04949296.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
gi|254216931|gb|EET06315.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
Length = 339
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 248 RFYGA--SAPAPTREEV 262
>gi|167566497|ref|ZP_02359413.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis EO147]
gi|167570050|ref|ZP_02362924.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis C6786]
Length = 339
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 198/258 (76%), Gaps = 3/258 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S ++ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F E
Sbjct: 4 SSSFSPRRVSVAPMMDWTDRHCRSFHRTISRHTWLYTEMVTTGALVHGDVARHLAFTPGE 63
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC
Sbjct: 64 APVALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADC 123
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAM D+V I +TVKHRIG+D + Y FVRDFVGTV++AGC FIVHARNA LK L+PK+
Sbjct: 124 VKAMCDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFIVHARNAILKGLSPKE 183
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP LKY++ Y LK+DFP+LEII+NGGI T E++ HL ++DGVMLGREAY NP++++
Sbjct: 184 NREIPPLKYDYAYRLKQDFPQLEIIVNGGITTLDEVERHLQHVDGVMLGREAYHNPYVLA 243
Query: 244 NFDLNYYSNLPQYKIPTR 261
+ D +Y PTR
Sbjct: 244 DVDARFYGA--ATPAPTR 259
>gi|53719465|ref|YP_108451.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei K96243]
gi|126438522|ref|YP_001058864.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126452196|ref|YP_001066108.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
gi|167719732|ref|ZP_02402968.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei DM98]
gi|167738727|ref|ZP_02411501.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 14]
gi|167815950|ref|ZP_02447630.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 91]
gi|167911080|ref|ZP_02498171.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 112]
gi|52209879|emb|CAH35851.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|126218015|gb|ABN81521.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126225838|gb|ABN89378.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
Length = 339
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 248 RFYGA--SAPAPTREEV 262
>gi|53723486|ref|YP_102906.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 23344]
gi|124383650|ref|YP_001026373.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126449152|ref|YP_001080353.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|167894436|ref|ZP_02481838.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 7894]
gi|254199845|ref|ZP_04906211.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|254206173|ref|ZP_04912525.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|254358573|ref|ZP_04974846.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
gi|52426909|gb|AAU47502.1| dihydrouridine synthase [Burkholderia mallei ATCC 23344]
gi|124291670|gb|ABN00939.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126242022|gb|ABO05115.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|147749441|gb|EDK56515.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|147753616|gb|EDK60681.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|148027700|gb|EDK85721.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
Length = 339
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 248 RFYGA--SAPAPTREEV 262
>gi|152980187|ref|YP_001353024.1| coproporphyrinogen III oxidase [Janthinobacterium sp. Marseille]
gi|151280264|gb|ABR88674.1| oxygen-independent coproporphyrinogen III oxidase
[Janthinobacterium sp. Marseille]
Length = 414
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/353 (49%), Positives = 232/353 (65%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
++ G E +YL AL D+E++LP+I RKI+TIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 63 EATGGFPEDEYLSALRADLEMALPLIWGRKIYTIFIGGGTPSLLSAAGLDRLLSDIRTLL 122
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ IT+EANP TFE EKF SY GINRLSIGIQSFN+++L+ LGR H+ +A+ A
Sbjct: 123 PLDGAVEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSRHLDALGRIHNGDEAQRA 182
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
++IA F+NFNLDL+YALP+QTL E LD+ AI Y+PPHLSLY LT+EPNT F KYPP
Sbjct: 183 VDIAASNFDNFNLDLMYALPSQTLDEARLDVQTAIAYAPPHLSLYHLTMEPNTVFAKYPP 242
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDY-------- 869
+ +P +D +A MQD I Y++YE+SAY++ +++HNLNYW+FGDY
Sbjct: 243 V-VPDDDASADMQDMIEQETGAAGYQHYEVSAYAQPKRQARHNLNYWQFGDYLGIGAGAH 301
Query: 870 --------------------------LGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
LGN I + K+I + L FEFMLNA+RL +G N
Sbjct: 302 TKLSFPHRVIRQARYKQPKSYMEQMRLGNPIQEEKEITRSELGFEFMLNAMRLVEGVEVN 361
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+F ERTG+ + +E L AE GLL R++K IKPT G+ FLNDLQ++FL +
Sbjct: 362 MFAERTGMPLNAVERALNEAEAKGLLYRDHKTIKPTVLGQRFLNDLQEMFLAD 414
>gi|329901885|ref|ZP_08272972.1| Radical SAM family enzyme, coproporphyrinogen III oxidase-like
protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548977|gb|EGF33594.1| Radical SAM family enzyme, coproporphyrinogen III oxidase-like
protein [Oxalobacteraceae bacterium IMCC9480]
Length = 418
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 231/353 (65%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
+S E+ YL+A+ D+E +LP+I RKI+TIFIGGGTPSL+S GLD L+ +++ LL
Sbjct: 67 QSQSGFPEEAYLDAVRADLESALPLIWGRKIYTIFIGGGTPSLMSAAGLDRLMSDVRTLL 126
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
IT+EANP TFE+EKF SY GINRLSIGIQSFN ++L LGR HD +A+ A
Sbjct: 127 PLDGAAEITMEANPGTFEVEKFRSYRASGINRLSIGIQSFNGEHLRALGRIHDHDEARRA 186
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
++IA F+NFNLDL+YALP+QTL+E D+ A+ Y+PPHLSLY LT+EPNT F K+PP
Sbjct: 187 VDIAHSTFDNFNLDLMYALPSQTLAEATQDIRTALGYAPPHLSLYHLTMEPNTVFAKFPP 246
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD I + Y +YE+SAY++ G +S+HNLNYW+FGDYL
Sbjct: 247 -ALPDDDLSADMQDMIAAETGAAGYGHYEVSAYAQPGRQSRHNLNYWQFGDYLGVGAGAH 305
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G++I + +I + L FEFMLN LRL GF N
Sbjct: 306 SKLSFPHRIIRQARFKQPKSYMENMARGSAIQEENEIARGELGFEFMLNTLRLTSGFQVN 365
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
LF ERTG+ + +ES L+ AE GLL R++K I+PT G+ FLNDLQQ+FL +
Sbjct: 366 LFAERTGLGLNAVESALQAAEAKGLLFRDHKTIRPTLLGQRFLNDLQQMFLAD 418
>gi|167902837|ref|ZP_02490042.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei NCTC
13177]
Length = 339
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 198/257 (77%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVATAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR ++
Sbjct: 248 RFYGA--SAPAPTREEV 262
>gi|300704326|ref|YP_003745929.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum CFBP2957]
gi|299071990|emb|CBJ43320.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum CFBP2957]
Length = 326
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 152/247 (61%), Positives = 194/247 (78%), Gaps = 3/247 (1%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 61 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 121 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 181 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADTV 238
Query: 258 IPTRIDI 264
PTR ++
Sbjct: 239 APTRAEV 245
>gi|238027482|ref|YP_002911713.1| dihydrouridine synthase [Burkholderia glumae BGR1]
gi|237876676|gb|ACR29009.1| Dihydrouridine synthase [Burkholderia glumae BGR1]
Length = 336
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 153/257 (59%), Positives = 195/257 (75%), Gaps = 3/257 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 11 RSRRVSVAPMMDWTDRHCRSLHRTISRHTWLYTEMVTTGALMHGDVARHLAFTPDEAPVA 70
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LAKSA++ + WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 71 LQLGGSEPDDLAKSARLGENWGYDEINLNCGCPSERVQRGAFGACLMNEPGLVADCVKAM 130
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 131 RDAVSVPVTVKHRIGVDAVEEYAFVRDFVGTVAQAGCDVFIVHARNAILKGLSPKENREI 190
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP+LEIIINGGI T E++ HL ++DGVMLGREAY NPF+++ D
Sbjct: 191 PPLKYDYAYRLKQDFPDLEIIINGGITTLDEVEAHLQHVDGVMLGREAYHNPFVLAEVDR 250
Query: 248 NYYSNLPQYKIPTRIDI 264
+Y PTR +I
Sbjct: 251 RFYGAAA--AAPTREEI 265
>gi|167919102|ref|ZP_02506193.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BCC215]
Length = 339
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 149/254 (58%), Positives = 196/254 (77%), Gaps = 3/254 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V I +TVKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D
Sbjct: 188 PPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDA 247
Query: 248 NYYSNLPQYKIPTR 261
+Y PTR
Sbjct: 248 RFYGA--SAPAPTR 259
>gi|134295639|ref|YP_001119374.1| tRNA-dihydrouridine synthase A [Burkholderia vietnamiensis G4]
gi|134138796|gb|ABO54539.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia vietnamiensis
G4]
Length = 344
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 153/257 (59%), Positives = 196/257 (76%), Gaps = 3/257 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E
Sbjct: 5 STLPPRRVSVAPMLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNES 64
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G +EP LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+
Sbjct: 65 PVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCV 124
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+N
Sbjct: 125 KAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAQAGCDTFIVHARNAILKGLSPKEN 184
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP LKY++ Y LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++
Sbjct: 185 REIPPLKYDYAYRLKRDFPALEIVINGGIKTLDEVAEHLEHVDGVMLGREAYHNPYVLAG 244
Query: 245 FDLNYYSNLPQYKIPTR 261
D +Y + PTR
Sbjct: 245 VDARFYGS--TAPAPTR 259
>gi|91783334|ref|YP_558540.1| tRNA-dihydrouridine synthase A [Burkholderia xenovorans LB400]
gi|91687288|gb|ABE30488.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia xenovorans
LB400]
Length = 333
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 150/245 (61%), Positives = 192/245 (78%), Gaps = 1/245 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSLHRVISRHTWLYTEMVTTGALLHGDVPRHLAFTPVEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V + +TVKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSVPVTVKHRIGVDAVEEYGFVRDFVGTIADAGCNVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP LEIIINGGIKT E++ HL ++DGVMLGREAY NP+L++ D
Sbjct: 188 PPLKYDYAYQLKRDFPHLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPYLLAGVDA 247
Query: 248 NYYSN 252
+Y +
Sbjct: 248 RFYGS 252
>gi|395763554|ref|ZP_10444223.1| coproporphyrinogen III oxidase [Janthinobacterium lividum PAMC
25724]
Length = 424
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 170/346 (49%), Positives = 224/346 (64%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL AL +D+E++LP+I RKIHTIFIGGGTPSL+S GL+ L+ +++ LL N
Sbjct: 80 EAQYLAALRLDLEMALPLIWGRKIHTIFIGGGTPSLMSAAGLERLMSDVRTLLPLDGNCE 139
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
IT+EANP TFE EKF SY GINRLSIGIQSFN ++L LGR HD +A+ A+EIA
Sbjct: 140 ITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNGRHLQALGRIHDDNEARRAVEIAHAN 199
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL+YALP QTL+E DL A+ ++PPHLSLY LT+EPNT F KYPP+ +P +D
Sbjct: 200 FDNFNLDLMYALPTQTLAEAQQDLETALSFAPPHLSLYHLTLEPNTLFAKYPPV-LPDDD 258
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
E+A + D + Y YE+SAY++ G +++HN NYW+FGDYL
Sbjct: 259 ESADIADMVAERAAQAGYGRYEVSAYAQPGRQARHNRNYWEFGDYLGIGAGAHSKISFPH 318
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ ++ + FEFMLN LRL GF+PNLF ERTG
Sbjct: 319 RVLRQARYKQPRAYMDAVLAGQPVQEERELAREEMGFEFMLNTLRLTQGFAPNLFAERTG 378
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I I+ L AE GLL R+++ I PT G FLNDLQQ+FL +
Sbjct: 379 LAINAIDKPLNTAEAKGLLYRDHQIIGPTPLGLRFLNDLQQMFLED 424
>gi|189350413|ref|YP_001946041.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|189334435|dbj|BAG43505.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
Length = 344
Score = 348 bits (893), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 197/258 (76%), Gaps = 3/258 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E
Sbjct: 4 SSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNE 63
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G +EP LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC
Sbjct: 64 SPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADC 123
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+
Sbjct: 124 VKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKE 183
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP LKY++ Y LK++FP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++
Sbjct: 184 NREIPPLKYDYAYRLKREFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLA 243
Query: 244 NFDLNYYSNLPQYKIPTR 261
+ D +Y + PTR
Sbjct: 244 DVDARFYGSTD--AAPTR 259
>gi|444358841|ref|ZP_21160214.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
gi|443603248|gb|ELT71271.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
Length = 344
Score = 348 bits (893), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 196/259 (75%), Gaps = 3/259 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
+ S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F
Sbjct: 3 VPSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPS 62
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E PIA Q+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 63 ESPIALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVAD 122
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK
Sbjct: 123 CVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPK 182
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP LKY++ Y LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP+++
Sbjct: 183 ENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVL 242
Query: 243 SNFDLNYYSNLPQYKIPTR 261
+ D +Y + +PTR
Sbjct: 243 AEVDARFYGS--TAAVPTR 259
>gi|385209824|ref|ZP_10036692.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
gi|385182162|gb|EIF31438.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
Length = 333
Score = 348 bits (892), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 149/245 (60%), Positives = 192/245 (78%), Gaps = 1/245 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R++S+APMM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F E P+A
Sbjct: 8 SPRRVSVAPMMDWTDRHCRSLHRVISRHTWLYTEMVTTGALLHGDVPRHLAFTPAEAPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 68 LQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
RD+V + +TVKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+I
Sbjct: 128 RDAVSVPVTVKHRIGVDAVEEYGFVRDFVGTIADAGCNVFIVHARNAILKGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P LKY++ Y LK+DFP LEIIINGGIKT E++ HL ++DGVMLGREAY NP+ +++ D
Sbjct: 188 PPLKYDYAYQLKRDFPHLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPYRLADVDA 247
Query: 248 NYYSN 252
+Y +
Sbjct: 248 RFYGS 252
>gi|206559989|ref|YP_002230753.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
gi|198036030|emb|CAR51923.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
Length = 353
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 196/259 (75%), Gaps = 3/259 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
+ S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F
Sbjct: 12 VPSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPS 71
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E PIA Q+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 72 ESPIALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVAD 131
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK
Sbjct: 132 CVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPK 191
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP LKY++ Y LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP+++
Sbjct: 192 ENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVL 251
Query: 243 SNFDLNYYSNLPQYKIPTR 261
+ D +Y + +PTR
Sbjct: 252 AEVDARFYGS--TAAVPTR 268
>gi|124267105|ref|YP_001021109.1| tRNA-dihydrouridine synthase A [Methylibium petroleiphilum PM1]
gi|124259880|gb|ABM94874.1| tRNA-dihydrouridine synthase A [Methylibium petroleiphilum PM1]
Length = 352
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 148/251 (58%), Positives = 198/251 (78%), Gaps = 1/251 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+ ++N ++S+APMM+ TDRHCR FHR ++R++ LYTEM TT A+L G+ LDF EE
Sbjct: 22 DRQWNPWRLSVAPMMDWTDRHCRHFHRLLSRHTRLYTEMVTTGALLHGDVPRHLDFGPEE 81
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G +EP+ LA AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 82 HPVALQLGGSEPEDLAACAKLGERWGYDEINLNCGCPSERVQRGAFGACLMAEPDLVADG 141
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V I +TVKHRIGID SY FVRDF+GTV++AGC FIVHARNA+LK L+PK+
Sbjct: 142 VKAMRDAVGIPVTVKHRIGIDRTESYGFVRDFIGTVAAAGCEVFIVHARNAWLKGLSPKE 201
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR++P L++ +VY LK+DFP L I++NGG+KT EI HL +DGVMLGREAY +P+LM+
Sbjct: 202 NRELPPLRHEWVYRLKRDFPALTIVLNGGVKTHDEIATHLAQVDGVMLGREAYHHPWLMA 261
Query: 244 NFDLNYYSNLP 254
++D+ ++ + P
Sbjct: 262 DWDVRFFGDAP 272
>gi|221197852|ref|ZP_03570898.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
gi|221204590|ref|ZP_03577607.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221175447|gb|EEE07877.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221181784|gb|EEE14185.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
Length = 357
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 153/258 (59%), Positives = 196/258 (75%), Gaps = 3/258 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E
Sbjct: 17 SSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNE 76
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G +EP LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC
Sbjct: 77 SPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADC 136
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+
Sbjct: 137 VKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKE 196
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP LKY++ Y LK DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++
Sbjct: 197 NREIPPLKYDYAYRLKHDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLA 256
Query: 244 NFDLNYYSNLPQYKIPTR 261
+ D +Y + PTR
Sbjct: 257 DVDARFYGSTD--AAPTR 272
>gi|161524837|ref|YP_001579849.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|160342266|gb|ABX15352.1| TIM-barrel protein, yjbN family [Burkholderia multivorans ATCC
17616]
Length = 357
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 197/258 (76%), Gaps = 3/258 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E
Sbjct: 17 SSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNE 76
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G +EP LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC
Sbjct: 77 SPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADC 136
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+
Sbjct: 137 VKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKE 196
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP LKY++ Y LK++FP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++
Sbjct: 197 NREIPPLKYDYAYRLKREFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLA 256
Query: 244 NFDLNYYSNLPQYKIPTR 261
+ D +Y + PTR
Sbjct: 257 DVDARFYGSTD--AAPTR 272
>gi|167586199|ref|ZP_02378587.1| tRNA-dihydrouridine synthase A [Burkholderia ubonensis Bu]
Length = 339
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 147/249 (59%), Positives = 193/249 (77%), Gaps = 1/249 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
++S R++S+APM++ TDRHCR FHR +TR++WLYTEM TT A+L G+ + L F
Sbjct: 3 VSSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRHTWLYTEMITTGALLFGDAQRHLAFTPS 62
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E P+A Q+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 63 ESPVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVAD 122
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC F+VHARNA LK L+PK
Sbjct: 123 CVKAMRDAVSVPVTVKHRIGVDAVEEYAFVRDFVGTVAEAGCEVFVVHARNAILKGLSPK 182
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP LKY++ Y LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++
Sbjct: 183 ENREIPPLKYDYAYRLKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVL 242
Query: 243 SNFDLNYYS 251
+ D +Y
Sbjct: 243 AGVDARFYG 251
>gi|299067351|emb|CBJ38550.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum CMR15]
Length = 326
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 153/247 (61%), Positives = 193/247 (78%), Gaps = 3/247 (1%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V I +TV
Sbjct: 61 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPRLVADGVKAMRDAVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 121 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFP LEI++NGG++T ++ID HL +IDGVM+GREAY +P LM+ FD YY
Sbjct: 181 LKRDFPRLEILLNGGVQTLEQIDTHLAHIDGVMIGREAYHHPHLMAGFDARYYGA--DTV 238
Query: 258 IPTRIDI 264
PTR ++
Sbjct: 239 APTRTEV 245
>gi|221213021|ref|ZP_03585997.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
gi|221167234|gb|EED99704.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
Length = 357
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 196/258 (75%), Gaps = 3/258 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E
Sbjct: 17 SSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNE 76
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G +EP LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC
Sbjct: 77 SPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADC 136
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+
Sbjct: 137 VKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKE 196
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP LKY++ Y LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++
Sbjct: 197 NREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLA 256
Query: 244 NFDLNYYSNLPQYKIPTR 261
+ D +Y + PTR
Sbjct: 257 DVDARFYGSTD--AAPTR 272
>gi|78066180|ref|YP_368949.1| tRNA-dihydrouridine synthase A [Burkholderia sp. 383]
gi|77966925|gb|ABB08305.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia sp. 383]
Length = 344
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 150/259 (57%), Positives = 196/259 (75%), Gaps = 3/259 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
+ S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F
Sbjct: 3 VPSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPN 62
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E P+A Q+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 63 ESPVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPSLVAD 122
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK
Sbjct: 123 CVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPK 182
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP LKY++ Y LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP+++
Sbjct: 183 ENREIPPLKYDYAYQLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVL 242
Query: 243 SNFDLNYYSNLPQYKIPTR 261
+ D +Y + +PTR
Sbjct: 243 AEVDARFYGS--TEAVPTR 259
>gi|404377933|ref|ZP_10983033.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
gi|348615864|gb|EGY65372.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
Length = 327
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 152/248 (61%), Positives = 194/248 (78%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEFEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+ +KAMRD+V I +T
Sbjct: 61 DLAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLVAQGVKAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 121 VKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY
Sbjct: 181 QLKRDFPHLEILLNGGVQTLEQIDAHLAHVDGVMIGREAYHHPHLMAAFDARYYG--AGT 238
Query: 257 KIPTRIDI 264
+ PTR ++
Sbjct: 239 EAPTRAEV 246
>gi|186475431|ref|YP_001856901.1| coproporphyrinogen III oxidase [Burkholderia phymatum STM815]
gi|184191890|gb|ACC69855.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
phymatum STM815]
Length = 404
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/350 (48%), Positives = 224/350 (64%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G E +YL+AL D+E SLP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 55 GTFPEDEYLDALRSDLERSLPLVWGRQVHTVFIGGGTPSLMSAKGLDRLLSDVRALLPLD 114
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE EKF + G+NRLS+GIQSFN +L LGR HDS QA++A+E+
Sbjct: 115 ADAEITLEANPGTFEAEKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSTQARHAVEV 174
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F NFNLDL++ALP QTL+E D+ A+ Y+PPHLSLY LT+EPNT F K+PP +
Sbjct: 175 AANTFGNFNLDLMFALPKQTLAECQADIETALSYAPPHLSLYHLTLEPNTLFAKFPP-PL 233
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD I + Y+ YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 234 PDDDSSADMQDWIHERTREAGYERYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAHTKL 293
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++ + ++ + L FEFMLNALRL +GF + F
Sbjct: 294 SFPNRILRQMRYKHPATFIEEARSGNAVQEEHEVGARDLPFEFMLNALRLVEGFPVHRFI 353
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+ I IE L+ AE+ GL+ R+ + I PT G+ FLNDLQ +FL +
Sbjct: 354 ERTGLPITSIEPALQEAERRGLITRDFEKIAPTPLGQAFLNDLQALFLKD 403
>gi|115351522|ref|YP_773361.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria AMMD]
gi|115281510|gb|ABI87027.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia ambifaria AMMD]
Length = 344
Score = 346 bits (887), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 150/257 (58%), Positives = 195/257 (75%), Gaps = 3/257 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E
Sbjct: 5 SSLPPRRVSVAPMLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNES 64
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+
Sbjct: 65 PVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCV 124
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
KAMRD+V + +TVKHRIG+D + Y FVRDFVG V+ AGC TF+VHARNA LK L+PK+N
Sbjct: 125 KAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGKVAEAGCETFVVHARNAILKGLSPKEN 184
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP LKY++ Y LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++
Sbjct: 185 REIPPLKYDYAYQLKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAG 244
Query: 245 FDLNYYSNLPQYKIPTR 261
D +Y + +PTR
Sbjct: 245 VDARFYGSTA--AVPTR 259
>gi|107022641|ref|YP_620968.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia AU 1054]
gi|116689590|ref|YP_835213.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia HI2424]
gi|105892830|gb|ABF75995.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia AU
1054]
gi|116647679|gb|ABK08320.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia
HI2424]
Length = 365
Score = 345 bits (885), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 148/259 (57%), Positives = 195/259 (75%), Gaps = 3/259 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
+ S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F
Sbjct: 24 VPSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPS 83
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E P+A Q+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 84 ESPVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVAD 143
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C++AMRD+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK
Sbjct: 144 CVRAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPK 203
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP LKY++ Y LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP+++
Sbjct: 204 ENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVL 263
Query: 243 SNFDLNYYSNLPQYKIPTR 261
+ D +Y + +P R
Sbjct: 264 AEVDARFYGS--TAAVPMR 280
>gi|187928263|ref|YP_001898750.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12J]
gi|187725153|gb|ACD26318.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12J]
Length = 327
Score = 345 bits (885), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 193/248 (77%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEFEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+ + AMRD+V I +T
Sbjct: 61 DLAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLVAQGVTAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 121 VKHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY
Sbjct: 181 QLKRDFPHLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMAAFDARYYG--AGT 238
Query: 257 KIPTRIDI 264
+ PTR ++
Sbjct: 239 EAPTRAEV 246
>gi|254245521|ref|ZP_04938842.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
gi|124870297|gb|EAY62013.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
Length = 359
Score = 345 bits (884), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 148/252 (58%), Positives = 193/252 (76%), Gaps = 3/252 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q
Sbjct: 25 RRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPVALQ 84
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +E LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD
Sbjct: 85 LGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVRAMRD 144
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V + +TVKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP
Sbjct: 145 AVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPP 204
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
LKY++ Y LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +
Sbjct: 205 LKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARF 264
Query: 250 YSNLPQYKIPTR 261
Y +PTR
Sbjct: 265 YGA--TAAVPTR 274
>gi|134095309|ref|YP_001100384.1| coproporphyrinogen III oxidase [Herminiimonas arsenicoxydans]
gi|133739212|emb|CAL62261.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Herminiimonas arsenicoxydans]
Length = 414
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 226/351 (64%), Gaps = 35/351 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
++ G E +YL AL D+E +LP+I RKI+TIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 63 EATGGFPEDEYLSALRADLEQALPLIWGRKIYTIFIGGGTPSLLSAKGLDRLLSDIRTLL 122
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ IT+EANP TFE EKF SY G+NRLSIGIQSFN ++L LGR HD +A+ A
Sbjct: 123 PLDGAVEITMEANPGTFEAEKFKSYRSSGVNRLSIGIQSFNARHLQALGRIHDGDEARRA 182
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
++IA F NFNLDL+YALP+QTL E D+ AI ++PPHLSLY LT+EPNT F KYPP
Sbjct: 183 VDIAMANFENFNLDLMYALPSQTLEEARQDVQTAIAFAPPHLSLYHLTMEPNTVFAKYPP 242
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDY-------- 869
+ +P +D +A MQD I Y++YE+SAY++ +++HNLNYW+FGDY
Sbjct: 243 V-VPDDDASADMQDMIAEETTAAGYQHYEVSAYAQPKRQARHNLNYWQFGDYLGIGAGAH 301
Query: 870 --------------------------LGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
LGN I + +I + L FEFMLNA+RL +G N
Sbjct: 302 TKLSFPHRVIRQARYKQPKSYMEQMRLGNPIQEETEISRSELGFEFMLNAMRLTNGVEVN 361
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
LF +RTG+ + IE L+ AE GLL R++K IKPT G+ FLNDLQQ+FL
Sbjct: 362 LFADRTGMPLNAIERALRAAEDKGLLYRDHKTIKPTELGQRFLNDLQQMFL 412
>gi|209519148|ref|ZP_03267953.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
H160]
gi|209500448|gb|EEA00499.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
H160]
Length = 409
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 225/346 (65%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YLEAL D+E++LP+I R++HT+FIGGGTPSL+S GLD +L +I+ LL +
Sbjct: 63 EGDYLEALRADLEMALPLIWGRQVHTVFIGGGTPSLLSAAGLDSMLSDIRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE +KF + G+NRLS+GIQSFN +L LGR HD+ QA++A+E+A
Sbjct: 123 ITLEANPGTFEADKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDAAQARHAVEVAATT 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPGQTLAECQADVETALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y+ YE+SAY++ +S+HNLNYW+FGDYL
Sbjct: 242 ASADMQDWIHQRTAEAGYERYEVSAYARPHRQSKHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G S+ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RIVRQARYKHPTTFIEQARAGASVQEEHEVGPRDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
++I IE+ L+ AE+ L+ R+++ I PT G+ FLNDLQ +FL +
Sbjct: 362 LSITTIEAALEEAERRKLITRDHERIAPTPLGQAFLNDLQALFLKD 407
>gi|420252461|ref|ZP_14755571.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia sp. BT03]
gi|398054686|gb|EJL46798.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia sp. BT03]
Length = 404
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 225/350 (64%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 55 GAFPEDDYLDALRSDLEQALPLVWGRQVHTVFIGGGTPSLMSAKGLDRLLSDVRALLPLD 114
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE +KF + G+NRLS+GIQSFN +L LGR HD+ QA++A+E+
Sbjct: 115 ADAEITLEANPGTFEADKFAQFRASGVNRLSVGIQSFNETHLKALGRIHDATQARHAVEV 174
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP +
Sbjct: 175 AASTFDNFNLDLMFALPKQTLAECQADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-PL 233
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD I + Y+ YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 234 PDDDSSADMQDWIHERTREAGYERYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAHTKL 293
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++ + ++ + L FEFMLNALRL +GF + F
Sbjct: 294 SFPNRILRQMRYKHPATFIEEARSGNAVQEEHEVGARDLPFEFMLNALRLVEGFPVHRFI 353
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+ + IE LK AE+ GL+ R+ + I PT G+ FLNDLQ++FL +
Sbjct: 354 ERTGLPMTSIEPALKEAERRGLITRDYEKIAPTPLGQAFLNDLQELFLKD 403
>gi|390567585|ref|ZP_10247913.1| coproporphyrinogen III oxidase [Burkholderia terrae BS001]
gi|389940486|gb|EIN02287.1| coproporphyrinogen III oxidase [Burkholderia terrae BS001]
Length = 404
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 163/350 (46%), Positives = 225/350 (64%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 55 GAFPEDDYLDALRSDLEQALPLVWGRQVHTVFIGGGTPSLMSAKGLDRLLSDVRALLPLD 114
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE +KF + G+NRLS+GIQSFN +L LGR HD+ QA++A+E+
Sbjct: 115 ADAEITLEANPGTFEADKFAQFRASGVNRLSVGIQSFNETHLKALGRIHDATQARHAVEV 174
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP +
Sbjct: 175 AATTFDNFNLDLMFALPKQTLAECQADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-PL 233
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD I + Y+ YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 234 PDDDSSADMQDWIHERTREAGYERYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAHTKL 293
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++ + ++ + L FEFMLNALRL +GF + F
Sbjct: 294 SFPNRILRQMRYKHPATFIEEARSGNAVQEEHEVGARDLPFEFMLNALRLVEGFPVHRFI 353
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+ + IE L+ AE+ GL+ R+ + I PT G+ FLNDLQ++FL +
Sbjct: 354 ERTGLPMTSIEPALQEAERRGLITRDYEKIAPTPLGQAFLNDLQELFLKD 403
>gi|393775593|ref|ZP_10363904.1| coproporphyrinogen iii oxidase [Ralstonia sp. PBA]
gi|392717319|gb|EIZ04882.1| coproporphyrinogen iii oxidase [Ralstonia sp. PBA]
Length = 407
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 161/350 (46%), Positives = 228/350 (65%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G+I E++YL+AL D+E +LP++ R +HT+FIGGGTPSL+S G+D LL +++ LL +
Sbjct: 57 GDIPEQRYLDALRADLEQALPMVWGRPVHTVFIGGGTPSLLSAAGMDRLLSDVRALLPLE 116
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP TFE E+F Y GINRLSIG+QSFN+++L LGR H +A+ AI+I
Sbjct: 117 ADAEITMEANPGTFEAERFREYRTSGINRLSIGVQSFNSQHLAALGRIHGGDEARRAIDI 176
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+ +F+N NLDL+YALP Q+L+E D+ A+ + HLSLY LT+EPNTYF K+PP ++
Sbjct: 177 AQCHFDNINLDLMYALPGQSLAECQADVETALGFGTTHLSLYHLTLEPNTYFAKFPP-AL 235
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D A MQD I + +++YE+SAY++ G S+HNLNYW+FGDYL
Sbjct: 236 PDDDTAADMQDWIAERTRAAGFEHYEVSAYARPGRRSKHNLNYWRFGDYLGIGAGAHGKL 295
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G + S++ L FEFMLNALRL +GF LF+
Sbjct: 296 SFPHRILREARYKHPQTYMEQCEAGQPVQDSREPGPDTLPFEFMLNALRLTEGFPSTLFY 355
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ TG+ + IE++L AE+ GLL+R++ I+PT G+ FLNDLQ++FL N
Sbjct: 356 DHTGLPLHTIEAQLDAAERKGLLERDHLTIRPTPLGQRFLNDLQEMFLGN 405
>gi|312795399|ref|YP_004028321.1| Oxygen-independent coproporphyrinogen-III oxidase [Burkholderia
rhizoxinica HKI 454]
gi|312167174|emb|CBW74177.1| Oxygen-independent coproporphyrinogen-III oxidase (EC 1.3.99.22)
[Burkholderia rhizoxinica HKI 454]
Length = 426
Score = 342 bits (876), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 228/369 (61%), Gaps = 35/369 (9%)
Query: 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI 681
+K PY + A + E +YL+AL D+E +LP+I R +HT+FIGGGTPSL+
Sbjct: 57 HKCPYCDFNSHAFTRGPNDAQFPETEYLDALRADLEAALPLIWGRPVHTVFIGGGTPSLL 116
Query: 682 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKY 741
S +D LL +++ LL + ITLEANP TFE KF S+ GINRLSIGIQSFN+ +
Sbjct: 117 SAQAIDRLLSDLRALLPLDADAEITLEANPGTFEAAKFASFRSSGINRLSIGIQSFNDAH 176
Query: 742 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 801
L LGR HD+ QA+ A+EIA F+NFNLDL++ALP Q L++ D+ A+ ++PPHLSL
Sbjct: 177 LQALGRIHDAAQARRAVEIAHSSFDNFNLDLMFALPGQRLAQCQADVETALSFAPPHLSL 236
Query: 802 YSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNL 861
Y LT+EPNTYF KYPP ++P +D +A MQ+ I + Y YE+SAY++T +S+HNL
Sbjct: 237 YHLTLEPNTYFHKYPP-ALPDDDTSADMQEWIHARTHEAGYNRYEVSAYARTHRQSRHNL 295
Query: 862 NYWKFGDYL----------------------------------GNSIAKSKKIEKKCLIF 887
NYW+FGDYL G I + ++ + L F
Sbjct: 296 NYWQFGDYLGIGAGAHSKLSFPERIVRQMRYKHPATYLAQTAAGAPIQEQHEVGVRDLPF 355
Query: 888 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 947
EFMLNALRL GF + F ERTG+ + IE L AE+ GL++R++ +I PT G+ FLN
Sbjct: 356 EFMLNALRLTQGFPVHRFIERTGLTMTSIEPALAQAERRGLIRRDHASIAPTPLGQRFLN 415
Query: 948 DLQQIFLNN 956
DLQ +FL +
Sbjct: 416 DLQALFLKD 424
>gi|254252479|ref|ZP_04945797.1| TIM-barrel protein, yjbN family [Burkholderia dolosa AUO158]
gi|124895088|gb|EAY68968.1| TIM-barrel protein, yjbN family [Burkholderia dolosa AUO158]
Length = 242
Score = 341 bits (875), Expect = 1e-90, Method: Composition-based stats.
Identities = 149/240 (62%), Positives = 190/240 (79%), Gaps = 1/240 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
+ S R++S+APM++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F
Sbjct: 3 VPSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVQRHLGFTPS 62
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E P+A Q+G +EP LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D
Sbjct: 63 ESPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVAD 122
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAMRD+V + +TVKHRIG+D I Y FVRDFVGT++ AGCRTFIVHARNA LK L+PK
Sbjct: 123 CVKAMRDAVSVPVTVKHRIGVDAIEDYAFVRDFVGTIADAGCRTFIVHARNAILKGLSPK 182
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP LKY++ Y LK+DFP LEI+INGGIKT E+ LHL ++DG MLGREAY NP+++
Sbjct: 183 ENREIPPLKYDYAYRLKRDFPSLEIVINGGIKTLDEVALHLEHVDGAMLGREAYHNPYVL 242
>gi|413963301|ref|ZP_11402528.1| coproporphyrinogen III oxidase [Burkholderia sp. SJ98]
gi|413929133|gb|EKS68421.1| coproporphyrinogen III oxidase [Burkholderia sp. SJ98]
Length = 407
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 223/348 (64%), Gaps = 37/348 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E++YL+AL D+E +LP++ R++HTIFIGGGTPSL+S GLD LL + + LL +
Sbjct: 58 EERYLDALRADLESALPLVWGRQVHTIFIGGGTPSLLSAKGLDRLLSDARALLPIDADAE 117
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF S+ G+NRLSIGIQSFN +L LGR HD+ QAK A+EIA ++
Sbjct: 118 ITLEANPGTFEAAKFASFRASGVNRLSIGIQSFNEAHLKALGRIHDAMQAKKAVEIAAKH 177
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP Q+L E D+ AI ++PPHLSLY LT+EPNT F KYPP ++P +D
Sbjct: 178 FDNFNLDLMFALPQQSLDECKHDIETAISFAPPHLSLYHLTMEPNTVFAKYPP-ALPDDD 236
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG------------- 871
+A MQD I + Y YE+SAY+K +S+HNLNYW+FGDYLG
Sbjct: 237 ASADMQDWIHERTREAGYARYEVSAYAKPHRQSRHNLNYWRFGDYLGIGAGAHTKLSFPS 296
Query: 872 -----------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
+I + +++ + L FEFMLN LRL +GF + F ER
Sbjct: 297 KILRQARFKHPSSYMDHALSPAETAIQEEREVGPRDLPFEFMLNTLRLVEGFPVHSFVER 356
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + IE L AEK GL+ R+ + I PT G+ FLNDLQ++FL +
Sbjct: 357 TGLALSAIEPALAEAEKRGLITRDIERIAPTELGQRFLNDLQELFLKD 404
>gi|295677346|ref|YP_003605870.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
CCGE1002]
gi|295437189|gb|ADG16359.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
CCGE1002]
Length = 409
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 224/350 (64%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
+ E YL+AL D+E++LP+I R++HT+FIGGGTPSL+S GLD +L +I+ LL
Sbjct: 59 ASFPESDYLDALRADLEMALPLIWGRQVHTVFIGGGTPSLLSAAGLDRMLSDIRALLPLD 118
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE +KF + G+NRLS+GIQSFN L LGR HD+ QA++A+E+
Sbjct: 119 ADAEITLEANPGTFEADKFAQFRASGVNRLSVGIQSFNETQLKALGRIHDAAQARHAVEV 178
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++
Sbjct: 179 AATTFDNFNLDLMFALPKQTLAECQADVETALSFAPPHLSLYHLTLEPNTLFAKFPP-AL 237
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD I Y+ YE+SAY++ +S+HNLNYW+FGDYL
Sbjct: 238 PDDDASADMQDWIHQRTAAAGYERYEVSAYARPHRQSKHNLNYWRFGDYLGIGAGAHTKL 297
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G S+ + ++ + L FEFMLNALRL +GF + F
Sbjct: 298 SFPNRIVRQARYKHPTTFIEQARAGASVQEEHEVGPRDLPFEFMLNALRLVEGFPVHRFI 357
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG++I IE L+ AE+ L+ R+++ I PT G+ FLNDLQ +FL +
Sbjct: 358 ERTGLSITTIEPALQEAERRKLITRDHERIAPTPLGQAFLNDLQALFLKD 407
>gi|91784890|ref|YP_560096.1| coproporphyrinogen III oxidase [Burkholderia xenovorans LB400]
gi|91688844|gb|ABE32044.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia xenovorans LB400]
Length = 409
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 226/346 (65%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 63 ETEYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE +KF + G++RLS+GIQSFN +L LGR HDS QA++A+E+A
Sbjct: 123 ITLEANPGTFEADKFAQFRASGVSRLSVGIQSFNEAHLKALGRIHDSAQARHAVEVASTT 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPGQTLAECQADVEMALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y+ YE+SAY++ +S+HNLNYW+FGDYL
Sbjct: 242 ASADMQDWIHERTSAAGYERYEVSAYARPHRQSRHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPTTFIEQAKAGTAVQEEHEVGTRDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+++ IE L+ AE+ L+ R+++ I PT G+ FLNDLQ++FL +
Sbjct: 362 MSMTSIEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQELFLKD 407
>gi|416938695|ref|ZP_11934319.1| coproporphyrinogen III oxidase [Burkholderia sp. TJI49]
gi|325524720|gb|EGD02707.1| coproporphyrinogen III oxidase [Burkholderia sp. TJI49]
Length = 404
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRADIETALSFAPPHLSLYHLTLEPNTMFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALKEAERRGLIARDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|94310927|ref|YP_584137.1| tRNA-dihydrouridine synthase A [Cupriavidus metallidurans CH34]
gi|93354779|gb|ABF08868.1| tRNA-dihydrouridine synthase A [Cupriavidus metallidurans CH34]
Length = 351
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 188/243 (77%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+IS+APMM+ TDRHCR FHR +++++WLYTEM TT A+L G+ LDF+A E P+A Q
Sbjct: 23 RRISVAPMMDWTDRHCRTFHRALSQHTWLYTEMVTTGALLHGDVARHLDFSAAEQPVALQ 82
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP LA++AK+ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD
Sbjct: 83 LGGSEPVDLAQAAKLGEQWGYKEINLNCGCPSERVQRGAFGACLMAEPQLVADCVRAMRD 142
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V + +TVKHRIGID I Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP
Sbjct: 143 VVSVPVTVKHRIGIDTIEHYGFVRDFVGTIAEAGCDIFIVHARNAILKGLSPKENREIPP 202
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y Y LK++FP LEI+INGG+ + EID HL ++DGVM+GR+AY +P+ +S D +
Sbjct: 203 LRYEVAYELKREFPHLEILINGGVVSYGEIDEHLRHVDGVMIGRQAYHDPYFLSEMDARF 262
Query: 250 YSN 252
Y
Sbjct: 263 YGG 265
>gi|171058412|ref|YP_001790761.1| tRNA-dihydrouridine synthase A [Leptothrix cholodnii SP-6]
gi|170775857|gb|ACB33996.1| TIM-barrel protein, yjbN family [Leptothrix cholodnii SP-6]
Length = 342
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 147/259 (56%), Positives = 198/259 (76%), Gaps = 9/259 (3%)
Query: 3 MINSKYNKR--------KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNK 53
MI+S+ +++ ++S+APM++ TDRHCR FHR +TR + LYTEM TT A+L G++
Sbjct: 1 MIDSRAHQQPGIAPEAWRLSVAPMLDWTDRHCRHFHRLLTRRTRLYTEMVTTGALLHGDQ 60
Query: 54 KHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAIL 113
LDF+A EHP+A Q+G ++P LA A++ Q+WGYDE+NLNCGCPS RVQ G FGA L
Sbjct: 61 ARHLDFDAIEHPVALQLGGSDPADLAACARLAQRWGYDEVNLNCGCPSERVQKGAFGACL 120
Query: 114 MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN 173
M +P LV+D +KAMRD+V++ +TVKHRIGID SYDFVRDFVGT++ AGC FIVHARN
Sbjct: 121 MAEPALVADGVKAMRDAVDVPVTVKHRIGIDRGESYDFVRDFVGTLADAGCEVFIVHARN 180
Query: 174 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGR 233
A+L+ L+PK+NR IP L+Y VY LK+DFP+L I+INGGI+T EI HL ++DGVM+GR
Sbjct: 181 AWLQGLSPKENRDIPPLRYEQVYQLKRDFPQLTIVINGGIRTDDEIAAHLAHVDGVMVGR 240
Query: 234 EAYKNPFLMSNFDLNYYSN 252
+AY P+ M+ +DL ++
Sbjct: 241 QAYHEPWQMAGWDLRFFGE 259
>gi|167580994|ref|ZP_02373868.1| coproporphyrinogen III oxidase [Burkholderia thailandensis TXDOH]
Length = 405
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 221/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPEHDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALTFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 233 -AVPDDDASADMQDWLHERTAQAGYARYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G ++ + +++ + L FEFMLNALRL DG +
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGAAVQEEREVGPRDLPFEFMLNALRLVDGVPTH 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+++ I L A++ GL+ ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFAERTGMSLASIGPALAQAQQRGLIVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|385208465|ref|ZP_10035333.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia sp. Ch1-1]
gi|385180803|gb|EIF30079.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia sp. Ch1-1]
Length = 409
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 225/346 (65%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 63 ENEYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HDS QA++A+E+A
Sbjct: 123 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSAQARHAVEVASTT 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPGQTLAECQTDVETALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y+ YE+SAY++ +S+HNLNYW+FGDYL
Sbjct: 242 ASADMQDWIHERTSAAGYERYEVSAYAQPHRQSKHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPTTFIEQAKAGTAVQEEHEVGTRDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+++ IE L+ AE+ L+ R+++ I PT G+ FLNDLQ++FL +
Sbjct: 362 MSMTSIEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQELFLKD 407
>gi|170698510|ref|ZP_02889581.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
ambifaria IOP40-10]
gi|170136594|gb|EDT04851.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
ambifaria IOP40-10]
Length = 404
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S +GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSASGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTMFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHERTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGPRDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALKEAERRGLITRDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|402566633|ref|YP_006615978.1| yjbN family TIM-barrel protein [Burkholderia cepacia GG4]
gi|402247830|gb|AFQ48284.1| TIM-barrel protein, yjbN family [Burkholderia cepacia GG4]
Length = 328
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 147/245 (60%), Positives = 188/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +EP
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 QLKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGATAE- 239
Query: 257 KIPTR 261
PTR
Sbjct: 240 -APTR 243
>gi|126438587|ref|YP_001059968.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 668]
gi|167720745|ref|ZP_02403981.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei DM98]
gi|217420410|ref|ZP_03451915.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 576]
gi|237813384|ref|YP_002897835.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei MSHR346]
gi|254181026|ref|ZP_04887624.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1655]
gi|254298854|ref|ZP_04966304.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 406e]
gi|386860849|ref|YP_006273798.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1026b]
gi|418533319|ref|ZP_13099186.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1026a]
gi|126218080|gb|ABN81586.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 668]
gi|157808917|gb|EDO86087.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 406e]
gi|184211565|gb|EDU08608.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1655]
gi|217395822|gb|EEC35839.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 576]
gi|237505440|gb|ACQ97758.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei MSHR346]
gi|385361354|gb|EIF67239.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1026a]
gi|385657977|gb|AFI65400.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1026b]
Length = 405
Score = 338 bits (868), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 219/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E+ YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPERDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALAFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 233 -TVPDDDASADMQDWLHERTAQAGYARYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G + + +++ + L FEFMLNALRL DG
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGTPVQEEREVGPRDLPFEFMLNALRLVDGVPAY 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F RTG+++ I L AE+ GLL ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFEARTGMSLAAIGPALAQAEQRGLLVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|167903811|ref|ZP_02491016.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei NCTC
13177]
Length = 405
Score = 338 bits (868), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 219/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E+ YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPERDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALAFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 233 -TVPDDDASADMQDWLHERTAQAGYARYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G + + +++ + L FEFMLNALRL DG
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGTPVQEEREVGPRDLPFEFMLNALRLVDGVPAY 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F RTG+++ I L AE+ GLL ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFEARTGMSLAAIGPALAQAEQRGLLVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|187925063|ref|YP_001896705.1| coproporphyrinogen III oxidase [Burkholderia phytofirmans PsJN]
gi|187716257|gb|ACD17481.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
phytofirmans PsJN]
Length = 409
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 225/346 (65%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 63 ENEYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HDS QA++A+E+A
Sbjct: 123 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSAQARHAVEVAATT 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL++ D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P D
Sbjct: 183 FDNFNLDLMFALPGQTLAQCQADVETALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDAD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y+ YE+SAY++ +S+HNLNYW+FGDYL
Sbjct: 242 SSADMQDWIHERTSAAGYERYEVSAYARPHRQSKHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + +++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPTTFIERALAGTAVQEEREVGTRDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+++ IE L+ AE+ L+ R+++ I PT G+ FLNDLQ++FL +
Sbjct: 362 MSMTSIEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQELFLKD 407
>gi|76808674|ref|YP_334428.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1710b]
gi|126453675|ref|YP_001067260.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1106a]
gi|167825333|ref|ZP_02456804.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 9]
gi|167846835|ref|ZP_02472343.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei B7210]
gi|167895427|ref|ZP_02482829.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 7894]
gi|167920051|ref|ZP_02507142.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei BCC215]
gi|226193887|ref|ZP_03789489.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei Pakistan 9]
gi|242315904|ref|ZP_04814920.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1106b]
gi|254191872|ref|ZP_04898375.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei Pasteur 52237]
gi|254258471|ref|ZP_04949525.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1710a]
gi|403519681|ref|YP_006653815.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei BPC006]
gi|418540108|ref|ZP_13105671.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1258a]
gi|418546358|ref|ZP_13111578.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1258b]
gi|76578127|gb|ABA47602.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1710b]
gi|126227317|gb|ABN90857.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1106a]
gi|157939543|gb|EDO95213.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei Pasteur 52237]
gi|225934192|gb|EEH30177.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei Pakistan 9]
gi|242139143|gb|EES25545.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1106b]
gi|254217160|gb|EET06544.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 1710a]
gi|385362691|gb|EIF68498.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1258a]
gi|385364776|gb|EIF70483.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 1258b]
gi|403075324|gb|AFR16904.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei BPC006]
Length = 405
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 219/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E+ YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPERDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALAFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 233 -TVPDDDASADMQDWLHERTAQAGYARYEVSAYTKPHRQSKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G + + +++ + L FEFMLNALRL DG
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGTPVQEEREVGPRDLPFEFMLNALRLVDGVPAY 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F RTG+++ I L AE+ GLL ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFEARTGMSLAAIGPALAQAEQRGLLVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|377820104|ref|YP_004976475.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
YI23]
gi|357934939|gb|AET88498.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
YI23]
Length = 407
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 167/348 (47%), Positives = 221/348 (63%), Gaps = 37/348 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E++YL+AL D+E +LP++ R++HTIFIGGGTPSL+S GLD LL + + LL +
Sbjct: 58 EERYLDALRADLESALPLVWGRQVHTIFIGGGTPSLLSAKGLDRLLSDARALLPIDADAE 117
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF S+ G+NRLSIGIQSFN +L LGR HD+ QA+ A+EIA ++
Sbjct: 118 ITLEANPGTFEAAKFASFRASGVNRLSIGIQSFNEAHLKALGRIHDATQARRAVEIAAKH 177
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP Q+L E D+ AI ++PPHLSLY LT+EPNT F KYPP ++P +D
Sbjct: 178 FDNFNLDLMFALPQQSLDECRHDIETAISFAPPHLSLYHLTMEPNTVFAKYPP-ALPDDD 236
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG------------- 871
+A MQD I Y+ YE+SAY+K +S+HNLNYW+FGDYLG
Sbjct: 237 ASADMQDWIHERTHAAGYERYEVSAYAKPHRQSRHNLNYWRFGDYLGIGAGAHTKLSFPS 296
Query: 872 -----------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
I + +++ + L FEFMLN LRL +GF + F ER
Sbjct: 297 KILRQARFKHPASYMDHALAPDETPIQEEREVGPRDLPFEFMLNTLRLVEGFPVHAFVER 356
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + IE L AEK GL+ R + I PT G+ FLNDLQ++FL +
Sbjct: 357 TGLALSAIEPALVQAEKRGLITRTIERIAPTELGQRFLNDLQELFLKD 404
>gi|424904267|ref|ZP_18327777.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
gi|390930245|gb|EIP87647.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 323
Score = 338 bits (867), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 145/245 (59%), Positives = 189/245 (77%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA +AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +T
Sbjct: 61 DLAHAAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D ++ Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDSVDDYAFVRDFVGTVAAAGCEVFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+LEI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 181 RLKRDFPQLEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDARFYGATA-- 238
Query: 257 KIPTR 261
PTR
Sbjct: 239 PAPTR 243
>gi|134295023|ref|YP_001118758.1| coproporphyrinogen III oxidase [Burkholderia vietnamiensis G4]
gi|387901644|ref|YP_006331983.1| fadical SAM family protein [Burkholderia sp. KJ006]
gi|134138180|gb|ABO53923.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia vietnamiensis G4]
gi|387576536|gb|AFJ85252.1| Radical SAM family enzyme, similar to coproporphyrinogen III
oxidase, oxygen-independent, clustered with
nucleoside-triphosphatase RdgB [Burkholderia sp. KJ006]
Length = 404
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA Q
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAQT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL+E D+ A+ Y+PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLAECRADIETALSYAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHERTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMGTIEPALNEAERRGLITRDFTQIAPTPLGQRFLNDLQELFLRD 403
>gi|172059922|ref|YP_001807574.1| coproporphyrinogen III oxidase [Burkholderia ambifaria MC40-6]
gi|171992439|gb|ACB63358.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
ambifaria MC40-6]
Length = 404
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTMFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHERTAEAGYGRYEVSAYAKPDHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQATAGTPVQEEREVGPRDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALKEAERRGLITRDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|115350909|ref|YP_772748.1| coproporphyrinogen III oxidase [Burkholderia ambifaria AMMD]
gi|115280897|gb|ABI86414.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia ambifaria AMMD]
Length = 404
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTMFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHERTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGPRDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALKEAERRGLITRDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|53720178|ref|YP_109164.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei K96243]
gi|53726004|ref|YP_103674.1| coproporphyrinogen III oxidase [Burkholderia mallei ATCC 23344]
gi|67643941|ref|ZP_00442684.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
mallei GB8 horse 4]
gi|121598921|ref|YP_992154.1| coproporphyrinogen III oxidase [Burkholderia mallei SAVP1]
gi|124383729|ref|YP_001028599.1| coproporphyrinogen III oxidase [Burkholderia mallei NCTC 10229]
gi|126448733|ref|YP_001081502.1| coproporphyrinogen III oxidase [Burkholderia mallei NCTC 10247]
gi|166998296|ref|ZP_02264156.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
mallei PRL-20]
gi|167739727|ref|ZP_02412501.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 14]
gi|167816930|ref|ZP_02448610.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 91]
gi|167912077|ref|ZP_02499168.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 112]
gi|254175530|ref|ZP_04882190.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei ATCC 10399]
gi|254196044|ref|ZP_04902469.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei S13]
gi|254202372|ref|ZP_04908735.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei FMH]
gi|254207706|ref|ZP_04914056.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei JHU]
gi|254356394|ref|ZP_04972670.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei 2002721280]
gi|418398301|ref|ZP_12971890.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 354a]
gi|418557410|ref|ZP_13122005.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 354e]
gi|52210592|emb|CAH36575.1| putative coproporphyrinogen III oxidase family protein
[Burkholderia pseudomallei K96243]
gi|52429427|gb|AAU50020.1| oxygen-independent coproporphyrinogen III oxidase, putative
[Burkholderia mallei ATCC 23344]
gi|121227731|gb|ABM50249.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei SAVP1]
gi|124291749|gb|ABN01018.1| coproporphyrinogen dehydrogenase [Burkholderia mallei NCTC 10229]
gi|126241603|gb|ABO04696.1| coproporphyrinogen dehydrogenase [Burkholderia mallei NCTC 10247]
gi|147746619|gb|EDK53696.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei FMH]
gi|147751600|gb|EDK58667.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei JHU]
gi|148025391|gb|EDK83545.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei 2002721280]
gi|160696574|gb|EDP86544.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia mallei ATCC 10399]
gi|169652788|gb|EDS85481.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei S13]
gi|238525410|gb|EEP88838.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
mallei GB8 horse 4]
gi|243065371|gb|EES47557.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
mallei PRL-20]
gi|385365052|gb|EIF70749.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 354e]
gi|385366371|gb|EIF71994.1| coproporphyrinogen III oxidase [Burkholderia pseudomallei 354a]
Length = 405
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 218/353 (61%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E+ YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPERDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALAFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K S+HNLNYW+FGDYL
Sbjct: 233 -TVPDDDASADMQDWLHERTAQAGYARYEVSAYAKPHRRSKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G + + +++ + L FEFMLNALRL DG
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGTPVQEEREVGPRDLPFEFMLNALRLVDGVPAY 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F RTG+++ I L AE+ GLL ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFEARTGMSLAAIGPALAQAEQRGLLVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|167563699|ref|ZP_02356615.1| coproporphyrinogen III oxidase [Burkholderia oklahomensis EO147]
gi|167570849|ref|ZP_02363723.1| coproporphyrinogen III oxidase [Burkholderia oklahomensis C6786]
Length = 405
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 222/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPEHDYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSF+ +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFDESHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F+NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFDNFNLDLMFALPNQTLDECRTDLETALSFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y+ YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 233 -AVPDDDASADMQDWLHERTAQAGYERYEVSAYAKPHRQCKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G ++ + +++ + L FEFMLNALRL +G +
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGAAVQEEREVGPRDLPFEFMLNALRLVEGVPTH 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+++ I L AE+ GL+ ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFAERTGMSLAAIGPALAEAERRGLIVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|307730702|ref|YP_003907926.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
CCGE1003]
gi|307585237|gb|ADN58635.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
CCGE1003]
Length = 409
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +I+ LL +
Sbjct: 63 ENDYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDIRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HDSKQA+ A+E+A
Sbjct: 123 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSKQARQAVEVAATT 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D+ A+ + PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPQQTLAECEADVETALSFEPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y+ YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 242 ASADMQDWIHERTSAAGYERYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPATFIEQAKAGAAVQEEHEVSARDLPFEFMLNALRLMEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L+ AE+ L+ R+++ I PT G+ FLNDLQ +FL +
Sbjct: 362 LPMTSIEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQALFLKD 407
>gi|170693636|ref|ZP_02884794.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
graminis C4D1M]
gi|170141418|gb|EDT09588.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
graminis C4D1M]
Length = 409
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 222/346 (64%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +I+ LL +
Sbjct: 63 ENDYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDIRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HDS QA+ A+E+A
Sbjct: 123 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSTQARRAVEVAAST 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D++ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPQQTLAECQADIDTALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y+ YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 242 ASADMQDWIQERTSAAGYERYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPATFIEQAKAGAAVQEEHEVGPRDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L+ AE+ L+ R+++ I PT G+ FLNDLQ +FL +
Sbjct: 362 LPMTSIEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQALFLKD 407
>gi|167586473|ref|ZP_02378861.1| coproporphyrinogen III oxidase [Burkholderia ubonensis Bu]
Length = 404
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+E+A
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNETHLKALGRIHDAAQARAAVEVAANT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRADIETALSFAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y+ YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYERYEVSAYAKPHHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALKEAERRGLIARDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|83720503|ref|YP_442123.1| coproporphyrinogen III oxidase [Burkholderia thailandensis E264]
gi|257138311|ref|ZP_05586573.1| coproporphyrinogen III oxidase [Burkholderia thailandensis E264]
gi|83654328|gb|ABC38391.1| oxygen-independent coproporphyrinogen III oxidase, putative
[Burkholderia thailandensis E264]
Length = 405
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 220/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPEHDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALTFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW FGDYL
Sbjct: 233 -AVPDDDASADMQDWLHERTAQASYARYEVSAYAKPHRQSKHNLNYWCFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G ++ + +++ + L FEFMLNALRL DG +
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGAAVQEEREVGPRDLPFEFMLNALRLVDGVPTH 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+++ I L A++ GL+ ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFAERTGMSLASIGPALAQAQQRGLIVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|226196332|ref|ZP_03791914.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|254297746|ref|ZP_04965199.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|386861884|ref|YP_006274833.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403518544|ref|YP_006652677.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
gi|418387439|ref|ZP_12967302.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|418534028|ref|ZP_13099879.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|418553491|ref|ZP_13118314.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|157807557|gb|EDO84727.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|225931549|gb|EEH27554.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|385360277|gb|EIF66216.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|385371644|gb|EIF76811.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|385376345|gb|EIF81036.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|385659012|gb|AFI66435.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403074186|gb|AFR15766.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
Length = 323
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 190/248 (76%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +T
Sbjct: 61 DLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 181 RLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SA 238
Query: 257 KIPTRIDI 264
PTR ++
Sbjct: 239 PAPTREEV 246
>gi|418541069|ref|ZP_13106570.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|418547309|ref|ZP_13112472.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
gi|385359224|gb|EIF65198.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|385361779|gb|EIF67653.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
Length = 323
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 190/248 (76%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +T
Sbjct: 61 DLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 181 RLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SA 238
Query: 257 KIPTRIDI 264
PTR ++
Sbjct: 239 PAPTREEV 246
>gi|167619071|ref|ZP_02387702.1| coproporphyrinogen III oxidase [Burkholderia thailandensis Bt4]
Length = 405
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 220/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPEHDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALTFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW FGDYL
Sbjct: 233 -AVPDDDASADMQDWLHERTAQAGYARYEVSAYAKPHRQSKHNLNYWCFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G ++ + +++ + L FEFMLNALRL DG +
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGAAVQEEREVGPRDLPFEFMLNALRLVDGVPTH 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+++ I L A++ GL+ ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFAERTGMSLASIGPALAQAQQRGLIVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|239815113|ref|YP_002944023.1| tRNA-dihydrouridine synthase A [Variovorax paradoxus S110]
gi|239801690|gb|ACS18757.1| TIM-barrel protein, yjbN family [Variovorax paradoxus S110]
Length = 333
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 153/271 (56%), Positives = 199/271 (73%), Gaps = 7/271 (2%)
Query: 1 MNMINSKYN--KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCL 57
MN I N ++ +S+APMM+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L
Sbjct: 1 MNDIAKSLNLKEKTVSVAPMMDWTDRHCRYFHRLMSRHALLYTEMVTTGALVHGDVPRHL 60
Query: 58 DFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP 117
FN EEHP+A Q+G +EP LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P
Sbjct: 61 RFNEEEHPVALQLGGSEPADLAHCARLGEEWGYDEINLNCGCPSERVQRGAFGACLMAEP 120
Query: 118 LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
LV+DC+KAM D+ + +TVKHRIGID I SY+FVRDFVG VS AGCR FIVHARNA+L+
Sbjct: 121 ALVADCVKAMVDATRLPVTVKHRIGIDKIESYEFVRDFVGAVSEAGCRGFIVHARNAWLQ 180
Query: 178 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYK 237
L+PKQNR+IP L+Y V+ LK +FPEL+ INGGI ++ HL +DGVM+GREAY
Sbjct: 181 GLSPKQNREIPPLRYELVHRLKHEFPELDFSINGGISASAQVHEHLRLLDGVMVGREAYH 240
Query: 238 NPFLMSNFDLNYYSNLPQYKIP-TRIDIINL 267
NP+ ++ +D +Y +PQ P TR D+ +L
Sbjct: 241 NPWWLAEWDAEFYGAVPQ---PLTREDVESL 268
>gi|78065575|ref|YP_368344.1| coproporphyrinogen III oxidase [Burkholderia sp. 383]
gi|77966320|gb|ABB07700.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia sp. 383]
Length = 404
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 223/346 (64%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HTIFIGGGTPSL+S GLD +L +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTIFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNETHLKALGRIHDTTQARAAVEIAAKN 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ Y+PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDVETALSYAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y +YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGHYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTAVQEEREVGARDLPFEFMLNTLRLVEGFPVHNFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALQEAERRGLIARDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|107022074|ref|YP_620401.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia AU 1054]
gi|116689018|ref|YP_834641.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia HI2424]
gi|170732307|ref|YP_001764254.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia MC0-3]
gi|105892263|gb|ABF75428.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia cenocepacia AU 1054]
gi|116647107|gb|ABK07748.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia cenocepacia HI2424]
gi|169815549|gb|ACA90132.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
cenocepacia MC0-3]
Length = 404
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 59 EADYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKN 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAKAGTAVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALKEAERRGLITRDFTQIAPTPLGQRFLNDLQELFLRD 403
>gi|402567284|ref|YP_006616629.1| coproporphyrinogen III oxidase [Burkholderia cepacia GG4]
gi|402248481|gb|AFQ48935.1| coproporphyrinogen III oxidase [Burkholderia cepacia GG4]
Length = 404
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 222/346 (64%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKN 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFMEQAKAGTAVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALQEAERRGLIARDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|387902163|ref|YP_006332502.1| trNA dihydrouridine synthase A [Burkholderia sp. KJ006]
gi|387577055|gb|AFJ85771.1| tRNA dihydrouridine synthase A [Burkholderia sp. KJ006]
Length = 328
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 148/245 (60%), Positives = 188/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +EP
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAQAGCDTFIVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 RLKRDFPALEIVINGGIKTLDEVAEHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA-- 238
Query: 257 KIPTR 261
PTR
Sbjct: 239 PAPTR 243
>gi|421468097|ref|ZP_15916664.1| putative coproporphyrinogen dehydrogenase [Burkholderia multivorans
ATCC BAA-247]
gi|400232603|gb|EJO62209.1| putative coproporphyrinogen dehydrogenase [Burkholderia multivorans
ATCC BAA-247]
Length = 404
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQT E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTFDECRADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y+ YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYERYEVSAYAKPNHRCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RIVRQARYKHPATFIEQALAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALQEAERRGLITRDFTRIAPTPLGQRFLNDLQELFLRD 403
>gi|206561361|ref|YP_002232126.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia J2315]
gi|444361969|ref|ZP_21162542.1| putative coproporphyrinogen dehydrogenase [Burkholderia cenocepacia
BC7]
gi|444373849|ref|ZP_21173162.1| putative coproporphyrinogen dehydrogenase [Burkholderia cenocepacia
K56-2Valvano]
gi|198037403|emb|CAR53338.1| putative coproporphyrinogen III oxidase family protein
[Burkholderia cenocepacia J2315]
gi|443591009|gb|ELT59941.1| putative coproporphyrinogen dehydrogenase [Burkholderia cenocepacia
K56-2Valvano]
gi|443597840|gb|ELT66249.1| putative coproporphyrinogen dehydrogenase [Burkholderia cenocepacia
BC7]
Length = 404
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 222/346 (64%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKN 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAKAGAAVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALKEAERRGLITRDFTQIAPTPLGQRFLNDLQELFLRD 403
>gi|421480048|ref|ZP_15927700.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
gi|400221841|gb|EJO52267.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
Length = 328
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 148/245 (60%), Positives = 188/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAQAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 181 RLKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD-- 238
Query: 257 KIPTR 261
PTR
Sbjct: 239 AAPTR 243
>gi|167824321|ref|ZP_02455792.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 9]
Length = 334
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 190/248 (76%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +T
Sbjct: 61 DLAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 181 RLKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYG--ASA 238
Query: 257 KIPTRIDI 264
PTR ++
Sbjct: 239 PAPTREEV 246
>gi|421478103|ref|ZP_15925873.1| putative coproporphyrinogen dehydrogenase [Burkholderia multivorans
CF2]
gi|400225250|gb|EJO55427.1| putative coproporphyrinogen dehydrogenase [Burkholderia multivorans
CF2]
Length = 404
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQT E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTFDECRADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y+ YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYERYEVSAYAKPNHRCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAIAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALQEAERRGLITRDFTRIAPTPLGQRFLNDLQELFLRD 403
>gi|221201199|ref|ZP_03574239.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia multivorans CGD2M]
gi|221206347|ref|ZP_03579360.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia multivorans CGD2]
gi|221213627|ref|ZP_03586601.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia multivorans CGD1]
gi|221166416|gb|EED98888.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia multivorans CGD1]
gi|221173656|gb|EEE06090.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia multivorans CGD2]
gi|221179049|gb|EEE11456.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia multivorans CGD2M]
Length = 404
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQT E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTFDECRADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y+ YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYERYEVSAYAKPNHRCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFMEQALAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALQEAERRGLITRDFTRIAPTPLGQRFLNDLQELFLRD 403
>gi|187929361|ref|YP_001899848.1| coproporphyrinogen III oxidase [Ralstonia pickettii 12J]
gi|309781784|ref|ZP_07676517.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia sp.
5_7_47FAA]
gi|404396556|ref|ZP_10988350.1| hypothetical protein HMPREF0989_03247 [Ralstonia sp. 5_2_56FAA]
gi|187726251|gb|ACD27416.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia
pickettii 12J]
gi|308919425|gb|EFP65089.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia sp.
5_7_47FAA]
gi|348613646|gb|EGY63225.1| hypothetical protein HMPREF0989_03247 [Ralstonia sp. 5_2_56FAA]
Length = 422
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 225/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R +HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 69 GIPEERFLAAVRQDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDIRMLLPVDA 128
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ YL LGR H + +A+ AI++A
Sbjct: 129 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAYLQALGRIHSAAEARAAIDMA 188
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 189 RAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFAKYPP-ALP 247
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY+K G +HNLNYW+FGDYLG
Sbjct: 248 DDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGPGAHGKLS 307
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL DGF L
Sbjct: 308 FPHRVIREMRHKHPDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLTDGFPVTL 367
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ++FL +
Sbjct: 368 FQERTGLPLRSIERQLDAAEQRGLLTRDHVAIRPTELGQRFLNDLQELFLAD 419
>gi|171315532|ref|ZP_02904768.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
ambifaria MEX-5]
gi|171099369|gb|EDT44107.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
ambifaria MEX-5]
Length = 404
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQ+L E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQSLDECRTDIETALSFAPPHLSLYHLTLEPNTMFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHERTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPIGTIEPALKEAERRGLITRDFAQIAPTPLGQRFLNDLQELFLRD 403
>gi|407714475|ref|YP_006835040.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
phenoliruptrix BR3459a]
gi|407236659|gb|AFT86858.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
phenoliruptrix BR3459a]
Length = 409
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +I+ LL +
Sbjct: 63 ENDYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDIRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HDS QA+ A+E+A
Sbjct: 123 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSTQARRAVEVAANT 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPRQTLAECQADVETALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 242 ASADMQDWIHERTSAAGYGRYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G+++ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPATFIEQAKAGSAVQEEHEVSARDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + +E L+ AE+ L+ R+++ I PT G+ FLNDLQ +FL +
Sbjct: 362 LPMTSVEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQALFLKD 407
>gi|254246046|ref|ZP_04939367.1| Coproporphyrinogen III oxidase [Burkholderia cenocepacia PC184]
gi|124870822|gb|EAY62538.1| Coproporphyrinogen III oxidase [Burkholderia cenocepacia PC184]
Length = 404
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 59 EADYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAVKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKN 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAKAGTAVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALKEAERRGLITRDFTQIAPTPLGQRFLNDLQELFLRD 403
>gi|134280350|ref|ZP_01767061.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 305]
gi|134248357|gb|EBA48440.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia pseudomallei 305]
Length = 405
Score = 335 bits (860), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 218/353 (61%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E+ YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPERDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+EIA + F NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 VEIAARTFENFNLDLMFALPNQTLDECRADLETALAFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K +S+HNLNYW+FGDYL
Sbjct: 233 -TVPDDDASADMQDWLHERTAQAGYARYEVSAYAKPHRQSKHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G + + +++ + L FEFMLNALRL DG
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGTPVQEEREVGPRDLPFEFMLNALRLVDGVPAY 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F RTG+++ I L AE+ LL ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFEARTGMSLAAIGPALAQAEQRDLLVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|254252977|ref|ZP_04946295.1| Coproporphyrinogen III oxidase [Burkholderia dolosa AUO158]
gi|124895586|gb|EAY69466.1| Coproporphyrinogen III oxidase [Burkholderia dolosa AUO158]
Length = 404
Score = 335 bits (860), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 219/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ESDYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQT E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTFDECRADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y+ YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYERYEVSAYAKPNRQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL DGF + F ERTG
Sbjct: 298 RILRQARYKHPAAFIEHAMAGTPVQEEREVGARDLPFEFMLNTLRLVDGFPVHSFIERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALQEAERRGLIVRDFTRIAPTPLGQRFLNDLQELFLRD 403
>gi|444365932|ref|ZP_21166033.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
gi|443605311|gb|ELT73169.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
Length = 328
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E PIA Q+G +E
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPIALQLGGSERD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 RLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA-- 238
Query: 257 KIPTR 261
+PTR
Sbjct: 239 AVPTR 243
>gi|421867277|ref|ZP_16298936.1| Radical SAM family enzyme, similar to coproporphyrinogen III
oxidase, oxygen-independent,clustered with
nucleoside-triphosphatase RdgB [Burkholderia cenocepacia
H111]
gi|358072691|emb|CCE49814.1| Radical SAM family enzyme, similar to coproporphyrinogen III
oxidase, oxygen-independent,clustered with
nucleoside-triphosphatase RdgB [Burkholderia cenocepacia
H111]
Length = 404
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 221/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD +L +++ LL +
Sbjct: 59 ETEYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEGHLKALGRIHDTAQARAAVEIAAKN 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQTL E D+ A+ ++PPHLSLY LT+EPNT F K+PP+ +P +D
Sbjct: 179 FDNFNLDLMFALPNQTLDECRTDIETALSFAPPHLSLYHLTLEPNTLFAKFPPV-VPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y YE+SAY+K ++ +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYGRYEVSAYAKPNHQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEQAKAGAVVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE LK AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPMSTIEPALKEAERRGLITRDFTQIAPTPLGQRFLNDLQELFLRD 403
>gi|300690922|ref|YP_003751917.1| coproporphyrinogen dehydrogenase [Ralstonia solanacearum PSI07]
gi|299077982|emb|CBJ50623.1| Coproporphyrinogen dehydrogenase [Ralstonia solanacearum PSI07]
Length = 424
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 225/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 71 GIPEERFLAAIRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAHGLDTLLSDIRMLLPVDA 130
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI++A
Sbjct: 131 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHSAAEARAAIDLA 190
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF K+PP ++P
Sbjct: 191 RAHFDNINLDLMFALPGQTLAECEADVEAALSFDTSHVSLYHLTLEPNTYFAKHPP-ALP 249
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 250 DDDTAFAMQDWIHARLAGAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 309
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL DGF L
Sbjct: 310 FPHRVIREMRHKHPETYLRQAETAGGAAMVQEQREVDAADLPFEFMLNALRLTDGFPVTL 369
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 370 FQERTGLPLRSIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 421
>gi|344171893|emb|CCA84517.1| coproporphyrinogen dehydrogenase [Ralstonia syzygii R24]
Length = 423
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 226/352 (64%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 70 GIPEERFLAAIRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAHGLDTLLSDIRMLLPVDA 129
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI++A
Sbjct: 130 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHSAAEARAAIDLA 189
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF K+PP ++P
Sbjct: 190 RAHFDNINLDLMFALPGQTLAECEADVEAALSFGTSHVSLYHLTLEPNTYFAKHPP-ALP 248
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 249 DDDTAFAMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 308
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
++ + ++++ L FEFMLNALRL +GF L
Sbjct: 309 FPHRVIREMRHKHPETYLRQAETAGGAAAVQEQREVDAADLPFEFMLNALRLTEGFPVTL 368
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 369 FQERTGLPLRTIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 420
>gi|161525575|ref|YP_001580587.1| coproporphyrinogen III oxidase [Burkholderia multivorans ATCC
17616]
gi|189349697|ref|YP_001945325.1| coproporphyrinogen III oxidase [Burkholderia multivorans ATCC
17616]
gi|160343004|gb|ABX16090.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
multivorans ATCC 17616]
gi|189333719|dbj|BAG42789.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
multivorans ATCC 17616]
Length = 404
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 220/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 ETEYLDALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSF+ +L LGR HD+ QA+ A+EIA +
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFDEAHLKALGRIHDTAQARAAVEIAAKT 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQT E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQTFDECRADIETALSFAPPHLSLYHLTLEPNTLFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I + Y+ YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIHARTAEAGYERYEVSAYAKPNHRCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + F ERTG
Sbjct: 298 RILRQARYKHPATFIEHALAGTPVQEEREVGARDLPFEFMLNTLRLVEGFPVHSFVERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ I IE L+ AE+ GL+ R+ I PT G+ FLNDLQ++FL +
Sbjct: 358 LPISTIEPALQEAERRGLITRDFTRIAPTPLGQRFLNDLQELFLRD 403
>gi|421865213|ref|ZP_16296893.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
gi|358074676|emb|CCE47771.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
Length = 328
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E PIA Q+G +E
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPIALQLGGSERD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 RLKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA-- 238
Query: 257 KIPTR 261
+PTR
Sbjct: 239 AVPTR 243
>gi|344167236|emb|CCA79439.1| coproporphyrinogen dehydrogenase [blood disease bacterium R229]
Length = 422
Score = 335 bits (858), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 225/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 69 GIPEERFLAAIRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAHGLDTLLSDIRMLLPVDA 128
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI++A
Sbjct: 129 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHSAAEARAAIDLA 188
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF K+PP ++P
Sbjct: 189 RAHFDNINLDLMFALPGQTLAECEADVEAALSFDTSHVSLYHLTLEPNTYFAKHPP-ALP 247
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 248 DDDTAFAMQDWIHARLAGAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 307
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL DGF L
Sbjct: 308 FPHRVIREMRHKHPETYLRQAETAGGAAMVQEQREVDAADLPFEFMLNALRLTDGFPVTL 367
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 368 FQERTGLPLRSIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 419
>gi|421472742|ref|ZP_15920917.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
gi|400222506|gb|EJO52881.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
Length = 328
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 148/245 (60%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 181 RLKHDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD-- 238
Query: 257 KIPTR 261
PTR
Sbjct: 239 AAPTR 243
>gi|323527038|ref|YP_004229191.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
CCGE1001]
gi|323384040|gb|ADX56131.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia sp.
CCGE1001]
Length = 409
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 219/346 (63%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E YL+AL D+E++LP++ R++HT+FIGGGTPSL+S GLD +L +I+ LL +
Sbjct: 63 ENDYLDALRADLEMALPLVWGRQVHTVFIGGGTPSLLSAAGLDRMLSDIRALLPLDADAE 122
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLS+GIQSFN +L LGR HDS QA+ A+E+A
Sbjct: 123 ITLEANPGTFEAAKFAQFRASGVNRLSVGIQSFNEAHLKALGRIHDSTQARRAVEVAAST 182
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL+E D+ A+ ++PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 183 FDNFNLDLMFALPRQTLAECQADVETALSFAPPHLSLYHLTLEPNTLFAKFPP-ALPDDD 241
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y YE+SAY+K +S+HNLNYW FGDYL
Sbjct: 242 ASADMQDWIHERTSAAGYGRYEVSAYAKPHRQSKHNLNYWGFGDYLGIGAGAHTKLSFPN 301
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G ++ + ++ + L FEFMLNALRL +GF + F ERTG
Sbjct: 302 RVLRQARYKHPATFIEQAKAGAAVQEEHEVSARDLPFEFMLNALRLVEGFPVHRFIERTG 361
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + +E L+ AE+ L+ R+++ I PT G+ FLNDLQ +FL +
Sbjct: 362 LPMTSVEPALQEAERRKLITRDHEKIAPTPLGQAFLNDLQALFLKD 407
>gi|167845866|ref|ZP_02471374.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei B7210]
Length = 333
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 144/247 (58%), Positives = 189/247 (76%), Gaps = 3/247 (1%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 1 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 61 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 181 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYG--ASAP 238
Query: 258 IPTRIDI 264
PTR ++
Sbjct: 239 APTREEV 245
>gi|238026482|ref|YP_002910713.1| coproporphyrinogen III oxidase [Burkholderia glumae BGR1]
gi|237875676|gb|ACR28009.1| coproporphyrinogen III oxidase [Burkholderia glumae BGR1]
Length = 406
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 217/346 (62%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E++YL+AL D+E +LP + R++HT+FIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 EQEYLDALRADLEQALPFVWGRQVHTVFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HDS QA+ A+EIA
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDSAQARAAVEIAASR 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALPNQ+L E D+ A+ Y+PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPNQSLDECRADIETALAYAPPHLSLYHLTLEPNTMFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQD I Y +YE+SAY++ + +HNLNYW+FGDYL
Sbjct: 238 ASADMQDWIHERTAEAGYGHYEVSAYAQPHRQCRHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + ERTG
Sbjct: 298 RILRQARYKHPATFIEQAMAGTPVQEEREVGPRDLPFEFMLNTLRLVEGFPVASYAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ IE L AE+ GL++R+ + I PT G+ FLNDLQ++FL
Sbjct: 358 LPFSTIEPALAEAERRGLIQRDFERIAPTPLGQRFLNDLQELFLRG 403
>gi|209520920|ref|ZP_03269659.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
gi|209498644|gb|EDZ98760.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
Length = 317
Score = 333 bits (854), Expect = 2e-88, Method: Composition-based stats.
Identities = 145/236 (61%), Positives = 185/236 (78%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F EE P+A Q+G +EP
Sbjct: 1 MMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPEEAPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SA++ ++WGYDEINLNCGCPS RV+ G FGA LM +P LV+DC+KAMRD V + +T
Sbjct: 61 DLARSARLGEQWGYDEINLNCGCPSERVRRGAFGACLMNEPQLVADCVKAMRDVVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDTVEEYGFVRDFVGTIAQAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP+LEIIINGGIKT E+D HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 QLKRDFPQLEIIINGGIKTLDEVDTHLQHVDGVMLGREAYHNPYVLAEVDSRFYGS 236
>gi|330815845|ref|YP_004359550.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia gladioli BSR3]
gi|327368238|gb|AEA59594.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderia gladioli BSR3]
Length = 409
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 216/346 (62%), Gaps = 35/346 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E+ YL+AL D+E +LP + R++HTIFIGGGTPSL+S GLD LL +++ LL +
Sbjct: 59 EEAYLDALRADLEQALPFVWGRQVHTIFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAE 118
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF + G+NRLSIGIQSFN +L LGR HD+ QA+ A+EIA
Sbjct: 119 ITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFNEAHLKALGRIHDTAQARAAVEIAAST 178
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDL++ALP QTL++ D+ A+ Y+PPHLSLY LT+EPNT F K+PP ++P +D
Sbjct: 179 FDNFNLDLMFALPKQTLAQCQADIETALSYAPPHLSLYHLTLEPNTLFAKFPP-AVPDDD 237
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
+A MQ+ I Y YE+SAY++ + +HNLNYW+FGDYL
Sbjct: 238 ASADMQEWIQERTAQAGYGRYEVSAYARPNRQCKHNLNYWRFGDYLGIGAGAHTKLSFPN 297
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G + + +++ + L FEFMLN LRL +GF + ERTG
Sbjct: 298 RILRQARYKHPATYMEQAMAGTPVQEEREVGPRDLPFEFMLNTLRLAEGFPVASYAERTG 357
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+ + IE L AE+ GL+ R+ + I PT G+ FLNDLQ++FL +
Sbjct: 358 LPLSTIEPALAEAERRGLIARDYERIAPTPLGQRFLNDLQELFLRD 403
>gi|170698688|ref|ZP_02889754.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
gi|170136392|gb|EDT04654.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
Length = 328
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 145/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSERD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVG V+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGKVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 QLKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA-- 238
Query: 257 KIPTR 261
+PTR
Sbjct: 239 AVPTR 243
>gi|171317498|ref|ZP_02906688.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|172060541|ref|YP_001808193.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria MC40-6]
gi|171097327|gb|EDT42172.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|171993058|gb|ACB63977.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MC40-6]
Length = 328
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 145/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSERD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVG V+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGKVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 QLKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA-- 238
Query: 257 KIPTR 261
+PTR
Sbjct: 239 AVPTR 243
>gi|170732894|ref|YP_001764841.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia MC0-3]
gi|169816136|gb|ACA90719.1| TIM-barrel protein, yjbN family [Burkholderia cenocepacia MC0-3]
Length = 328
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 144/245 (58%), Positives = 186/245 (75%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPVALQLGGSERD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVRAMRDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 RLKHDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA-- 238
Query: 257 KIPTR 261
+PTR
Sbjct: 239 AVPTR 243
>gi|170692264|ref|ZP_02883427.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
gi|170142694|gb|EDT10859.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
Length = 317
Score = 332 bits (851), Expect = 7e-88, Method: Composition-based stats.
Identities = 145/236 (61%), Positives = 184/236 (77%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 1 MMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V + +T
Sbjct: 61 DLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDVVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY + Y
Sbjct: 121 VKHRIGVDAVEEYGFVRDFVGTIAEAGCDVFIVHARNAILKGLSPKENREIPPLKYEYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP LEIIINGGI+T E++ HL ++DGVMLGREAY NP+L+++ D +Y +
Sbjct: 181 QLKRDFPHLEIIINGGIRTLDEVETHLQHVDGVMLGREAYHNPYLLADVDARFYGS 236
>gi|350545390|ref|ZP_08914877.1| Radical SAM family enzyme, similar to coproporphyrinogen III
oxidase, oxygen-independent,clustered with
nucleoside-triphosphatase RdgB [Candidatus Burkholderia
kirkii UZHbot1]
gi|350526824|emb|CCD39452.1| Radical SAM family enzyme, similar to coproporphyrinogen III
oxidase, oxygen-independent,clustered with
nucleoside-triphosphatase RdgB [Candidatus Burkholderia
kirkii UZHbot1]
Length = 407
Score = 332 bits (850), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 217/348 (62%), Gaps = 37/348 (10%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E++YL+A D+E +LP++ R +HTIFIGGGTPSL+S GLD LL + LL +
Sbjct: 58 EERYLDAFRADLESALPLVWGRHVHTIFIGGGTPSLLSAKGLDRLLSDALALLPIDADAE 117
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE KF S+ G+NRLSIGIQSFN +L LGR HD+ Q + A+EIA ++
Sbjct: 118 ITLEANPGTFEAAKFASFRASGVNRLSIGIQSFNEAHLKALGRIHDAAQVRKAVEIAAKH 177
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+NFNLDLI+ALP Q+L E D+ AI ++PPHLSLY LT+EPNT F KYPP +P +D
Sbjct: 178 FDNFNLDLIFALPQQSLEECRHDIETAISFAPPHLSLYHLTMEPNTLFAKYPP-PLPDDD 236
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG------------- 871
A MQD I + Y+ YE+SAY+K +S+HNLNYW+FGDYLG
Sbjct: 237 AAAGMQDWIYQRTREAGYERYEVSAYAKPHRQSRHNLNYWRFGDYLGIGAGAHTKLSFPS 296
Query: 872 -----------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
+ + +++ + L FEFMLN LRL +GF + F ER
Sbjct: 297 KILRQARFKHPASYMDHVLSRTETPVQEEREVGPRDLPFEFMLNTLRLVEGFPVHSFVER 356
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+++ IE L AEK GL+ R + I PT G+ FLNDLQ++FL +
Sbjct: 357 TGLSLSAIEPALVEAEKHGLIARTIERIAPTELGQRFLNDLQELFLKD 404
>gi|407713533|ref|YP_006834098.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
gi|407235717|gb|AFT85916.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
Length = 316
Score = 331 bits (849), Expect = 1e-87, Method: Composition-based stats.
Identities = 143/235 (60%), Positives = 186/235 (79%), Gaps = 1/235 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 1 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPDD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 61 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGVDAVEDYSFVRDFVGTIAQAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP+LEI+INGGIKT E++ HL ++DGVMLGREAY +P+L+++ D +Y +
Sbjct: 181 LKRDFPQLEIVINGGIKTLDEVETHLQHVDGVMLGREAYHHPYLLADVDARFYGS 235
>gi|416934020|ref|ZP_11933791.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
gi|325525397|gb|EGD03227.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
Length = 328
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 145/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F+ E P+A Q+G +E
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFSPNESPVALQLGGSERD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V + +T
Sbjct: 61 DLARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMNDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 VKHRIGVDAVEDYAFVRDFVGTVAEAGCATFVVHARNAILKGLSPKENREIPPLKYDYAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFPELEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 181 RLKRDFPELEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTD-- 238
Query: 257 KIPTR 261
PTR
Sbjct: 239 AAPTR 243
>gi|260221113|emb|CBA29353.1| tRNA-dihydrouridine synthase A [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 370
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 144/241 (59%), Positives = 184/241 (76%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L FN EEHP+A Q+
Sbjct: 47 RLSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGALIHGDVPRHLRFNVEEHPVALQL 106
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++AK+ Q WGYDEIN+NCGCPS RVQ G FGA LM + LV+DC+K+M D+
Sbjct: 107 GGSEPADLARAAKLGQDWGYDEININCGCPSERVQRGAFGACLMNEAPLVADCVKSMVDA 166
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +TVKHRIGID SY FVRDFVGTV+ AGC FI HARNA+LK L+PK+NR+IP L
Sbjct: 167 VDVPVTVKHRIGIDKEESYSFVRDFVGTVADAGCNVFIAHARNAWLKGLSPKENREIPPL 226
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y VY LKKDFP L I INGGI E+ HL ++DGVMLGREAY NP+ ++ +D +Y
Sbjct: 227 RYELVYQLKKDFPHLTIAINGGITQTAEVAGHLEHVDGVMLGREAYHNPWWLAEWDSAFY 286
Query: 251 S 251
Sbjct: 287 G 287
>gi|94309795|ref|YP_583005.1| coproporphyrinogen III oxidase [Cupriavidus metallidurans CH34]
gi|430807407|ref|ZP_19434522.1| coproporphyrinogen III oxidase [Cupriavidus sp. HMR-1]
gi|93353647|gb|ABF07736.1| Oxygen-independent coproporphyrinogen III oxidase-like protein
[Cupriavidus metallidurans CH34]
gi|429500311|gb|EKZ98688.1| coproporphyrinogen III oxidase [Cupriavidus sp. HMR-1]
Length = 419
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/368 (45%), Positives = 223/368 (60%), Gaps = 35/368 (9%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + A I E YL+AL D+E SLP++ R +HT+FIGGGTPSL+S
Sbjct: 53 KCPYCDFNSHAAPGKPDSHEIPEDAYLDALRADLEQSLPLVWGRPVHTVFIGGGTPSLLS 112
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
G+D LL +I+ LL + IT+EANP TFE E+F SY GINRLSIGIQSFN+ +L
Sbjct: 113 AAGMDRLLSDIRALLPLDADAEITMEANPGTFEAERFASYRASGINRLSIGIQSFNDAHL 172
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR H ++A+ AI+IA ++F+N NLDL+YALP QTL E DL+ A+ Y HLSLY
Sbjct: 173 KALGRIHGEREARAAIDIALKHFDNVNLDLMYALPGQTLDECARDLDAALSYGTTHLSLY 232
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LT+EPNT F K+PP ++P D MQD + + Y++YE SAY+K E++HNLN
Sbjct: 233 HLTLEPNTLFAKFPP-ALPDEDTAYEMQDIVEARTAQAGYRHYETSAYAKPHREARHNLN 291
Query: 863 YWKFGDYL----------------------------------GNSIAKSKKIEKKCLIFE 888
YW+FGDYL GN++ +++++ L FE
Sbjct: 292 YWRFGDYLGIGAGAHGKLSFPNRILRQMRHKHPATYMEQALAGNAVQEAREVGADELPFE 351
Query: 889 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 948
FMLNALRL DG + F + TG+ + +I +L AEK GLL + IKPT GR FLND
Sbjct: 352 FMLNALRLTDGVPASSFHDYTGLPLHMIGKQLAAAEKKGLLDADPTVIKPTELGRRFLND 411
Query: 949 LQQIFLNN 956
LQ++FL +
Sbjct: 412 LQEMFLKD 419
>gi|73542165|ref|YP_296685.1| coproporphyrinogen III oxidase [Ralstonia eutropha JMP134]
gi|72119578|gb|AAZ61841.1| coproporphyrinogen III oxidase, anaerobic [Ralstonia eutropha
JMP134]
Length = 413
Score = 329 bits (843), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 165/368 (44%), Positives = 224/368 (60%), Gaps = 35/368 (9%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + A+ +I E YL+AL D+E SLP++ R +HT+FIGGGTPSL+S
Sbjct: 47 KCPYCDFNSHAVPGKDGSHDIPEDAYLDALRADLEQSLPLVWGRPVHTVFIGGGTPSLLS 106
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
G+D LL +I+ LL + IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L
Sbjct: 107 AAGMDRLLSDIRALLPLDADAEITMEANPGTFEAERFASYRASGVNRLSIGIQSFNDSHL 166
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR H ++A+ AI+IA++ F+N NLDL+YALP QTL + DL A+ Y HLSLY
Sbjct: 167 QALGRIHGEREARAAIDIAQRSFDNVNLDLMYALPGQTLEQCRSDLESALSYGTTHLSLY 226
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LT+EPNT F K+PP ++P +D MQD I + Y++YE SAY++ E++HNLN
Sbjct: 227 HLTLEPNTLFAKFPP-ALPDDDLAYEMQDLIEARTTEAGYRHYETSAYARAHREARHNLN 285
Query: 863 YWKFGDYL----------------------------------GNSIAKSKKIEKKCLIFE 888
YW+FGDYL GN++ +++++ L FE
Sbjct: 286 YWRFGDYLGIGAGAHGKLSFPNRILRQMRHKHPATYMAQAMAGNAVQEAREVGADELPFE 345
Query: 889 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 948
FMLNALRL DG + F + TG+ + I +L AEK GLL + I+PT GR FLND
Sbjct: 346 FMLNALRLTDGVPASSFHDMTGLPLHAISRQLAAAEKKGLLDADPTVIRPTELGRRFLND 405
Query: 949 LQQIFLNN 956
LQ++FL +
Sbjct: 406 LQEMFLKD 413
>gi|226940607|ref|YP_002795681.1| tRNA-dihydrouridine synthase A [Laribacter hongkongensis HLHK9]
gi|226715534|gb|ACO74672.1| Dihydrouridine synthase [Laribacter hongkongensis HLHK9]
Length = 339
Score = 328 bits (842), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 139/260 (53%), Positives = 196/260 (75%), Gaps = 3/260 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPI 66
Y R++ +APM++ TDRH R F R ++R++WLYTEM TT A++ G+ L F+ EHPI
Sbjct: 16 YRGRRVCVAPMLDWTDRHYRYFARLLSRHTWLYTEMVTTGALIHGDVPRHLTFHETEHPI 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G +EP +LA+ A++ + WGYDE+NLN GCPS RVQ G FGA LM +P LV+DC++A
Sbjct: 76 ALQLGGSEPAELAQCARLAESWGYDEVNLNVGCPSERVQKGAFGACLMKEPGLVADCVRA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
MRD + +TVKHRIG+DD+ ++ FV DFVG V++AGC TFIVHARNA LK L+PK+NR+
Sbjct: 136 MRDVTTLPVTVKHRIGVDDVEAFGFVSDFVGEVAAAGCSTFIVHARNAILKGLSPKENRE 195
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP LKY++ + LK +FP+LEI++NGGI+T E L ++DGVM+GREAY NP+L++ D
Sbjct: 196 IPPLKYDYAWRLKAEFPDLEILVNGGIRTLDEAAEQLGHVDGVMIGREAYHNPYLLAGVD 255
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+Y + ++ +PTR ++I
Sbjct: 256 ARFYGD--EHPVPTRAEVIE 273
>gi|418529717|ref|ZP_13095649.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
gi|371453237|gb|EHN66257.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
Length = 330
Score = 328 bits (841), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 146/267 (54%), Positives = 198/267 (74%), Gaps = 4/267 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F EEHP+A Q+
Sbjct: 3 RMSVAPMMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEVEEHPVALQL 62
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D
Sbjct: 63 GGSEPADLAHSARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADV 122
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVKHRIGID I SYDFVRDFVGTV+ AGC+ F+VHARNA+LK L+PK+NR++P L
Sbjct: 123 VSVPVTVKHRIGIDKIESYDFVRDFVGTVADAGCQVFVVHARNAWLKGLSPKENREVPPL 182
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V LK+DFP L I +NGGIKT + + L +DGVM+GREAY NP+ MS++D YY
Sbjct: 183 RYEVVAQLKRDFPGLTIAVNGGIKTDEIVLQQLQQVDGVMVGREAYHNPWWMSSWDALYY 242
Query: 251 SNLPQYKIPTRID---IINLDSENREN 274
+ + + I+ ++ ++ E RE+
Sbjct: 243 QDKSRERTREHIEEQMVLYMEREAREH 269
>gi|347538423|ref|YP_004845847.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345641600|dbj|BAK75433.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 316
Score = 327 bits (838), Expect = 2e-86, Method: Composition-based stats.
Identities = 142/239 (59%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Query: 15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDN 73
+APM++ TDRH R F RQITR++WLYTEM TT A+L G+ L ++ EHP+A Q+G +
Sbjct: 1 MAPMLDWTDRHYRFFARQITRHTWLYTEMVTTGALLYGDVARHLRYHECEHPVALQLGGS 60
Query: 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 133
EP +LA+ A++ ++WGYDE+NLN GCPS RVQ G FGA LM +P LV+DC+K+MRD+V I
Sbjct: 61 EPDELARCARLAEEWGYDEVNLNVGCPSERVQKGAFGACLMAEPQLVADCVKSMRDAVGI 120
Query: 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193
D+TVKHRIGID + Y +VRDFVG + AGC TFIVHARNA LK L+PK+NR+IP LKY+
Sbjct: 121 DVTVKHRIGIDAVEDYGYVRDFVGHIVEAGCATFIVHARNAILKGLSPKENREIPPLKYD 180
Query: 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
+VY LK+DFP++EI++NGG+K+ EI HL ++DGVM+GREAY NP+LM+++D +Y +
Sbjct: 181 YVYRLKRDFPDVEILLNGGVKSNDEIAGHLQHVDGVMVGREAYHNPWLMADWDARFYDD 239
>gi|388565745|ref|ZP_10152228.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
gi|388267108|gb|EIK92615.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
Length = 335
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 138/244 (56%), Positives = 189/244 (77%), Gaps = 1/244 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR HR +T+++ LYTEM TT A++ G+ + L FNAEEHP+A Q+
Sbjct: 11 RLSVAPMMDWTDRHCRFLHRLLTKHTLLYTEMVTTGALMHGSVQRHLRFNAEEHPVALQL 70
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +E +LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P V+D +KAMRD+
Sbjct: 71 GGSEADELARAARLGEEWGYDEINLNCGCPSERVQRGAFGACLMAEPQTVADGVKAMRDA 130
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVKHRIGID SY+FVRDFVGTV+ AGC FIVHARNA+L+ L+PK+NR++P L
Sbjct: 131 VSLPVTVKHRIGIDKTESYEFVRDFVGTVADAGCEVFIVHARNAWLQGLSPKENREVPPL 190
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y + LK+DFP L I +NGG T ++I HL ++DGVMLGREAY +P+L++ +D ++
Sbjct: 191 RYELAHRLKRDFPRLTIAVNGGFTTNEQIAEHLQHVDGVMLGREAYHHPWLLTTWDEAFF 250
Query: 251 SNLP 254
P
Sbjct: 251 GAPP 254
>gi|337279450|ref|YP_004618922.1| tRNA-dihydrouridine synthase [Ramlibacter tataouinensis TTB310]
gi|334730527|gb|AEG92903.1| candidate tRNA-dihydrouridine synthase [Ramlibacter tataouinensis
TTB310]
Length = 331
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 139/250 (55%), Positives = 189/250 (75%), Gaps = 1/250 (0%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
M + + + ++S+APMM+ TDRHCR FHR ++R + LYTEM TT A+L G+ LDF
Sbjct: 1 MQVPSPPPHPWRLSVAPMMDWTDRHCRYFHRLLSRRALLYTEMVTTGALLHGDVPRHLDF 60
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+A EHP+A Q+G +EP LA+ A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P L
Sbjct: 61 DAAEHPVALQLGGSEPADLAQCARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPRL 120
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC+KAM D+V++ +TVKHRIGID SYDFVRDFVGTV+ AGCR FIVHARNA+L+ L
Sbjct: 121 VADCVKAMVDAVDLPVTVKHRIGIDKTESYDFVRDFVGTVAEAGCRVFIVHARNAWLQGL 180
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR++P L+Y V+ LK+DFP L I INGG+ ++ L +DGVM+GR+AY P
Sbjct: 181 SPKENREVPPLRYELVHRLKRDFPGLVIAINGGVTADDQVAGQLQVLDGVMVGRQAYHQP 240
Query: 240 FLMSNFDLNY 249
+ ++++D +
Sbjct: 241 WWLASWDAAF 250
>gi|348618093|ref|ZP_08884625.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816605|emb|CCD29291.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 334
Score = 325 bits (834), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 188/257 (73%), Gaps = 7/257 (2%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN--KKHCLDFNAEEHPIAFQ 69
++ IAPMM TDRHCR FHR +TR +WLYTEM A+L + +H L F+ EHP+A Q
Sbjct: 2 RLCIAPMMGWTDRHCRYFHRLLTRRAWLYTEMVAVGALLHSDAARH-LAFDESEHPVALQ 60
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA AK + GYDEINLNCGCPS RVQ G FGA LM +PL V++C++AMRD
Sbjct: 61 LGGSNPDELADCAKRGEAAGYDEINLNCGCPSARVQRGVFGAALMAQPLRVAECVRAMRD 120
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIG+DDI Y FVRDF+GTV+ AGC+TFIVHAR+A L LNPK+NR +P
Sbjct: 121 AVSIPVTVKHRIGLDDIEEYAFVRDFIGTVAHAGCQTFIVHARSAVLHGLNPKENRSVPP 180
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y Y LK+DFP LEII+NGG+ T +++ HL +IDGVMLGR AY NP+L++ D +
Sbjct: 181 LRYEVAYRLKRDFPALEIILNGGVTTLAQVERHLAHIDGVMLGRAAYHNPWLLAGIDHRF 240
Query: 250 Y-SNLPQYKIPTRIDII 265
Y +N P + R D+I
Sbjct: 241 YQANAP---VAQRADVI 254
>gi|421748343|ref|ZP_16185953.1| coproporphyrinogen III oxidase [Cupriavidus necator HPC(L)]
gi|409772944|gb|EKN54839.1| coproporphyrinogen III oxidase [Cupriavidus necator HPC(L)]
Length = 414
Score = 325 bits (834), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 160/349 (45%), Positives = 217/349 (62%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E YL+AL D+E SLP++ R +HT+FIGGGTPSL+S G+D LL +I+ LL
Sbjct: 67 EIPEAAYLDALRADLEQSLPLVWGRPVHTVFIGGGTPSLLSAAGMDRLLSDIRALLPLDA 126
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY GINRLSIGIQSFN+++L LGR H +A+ AI+IA
Sbjct: 127 DAEITMEANPGTFEAERFASYRASGINRLSIGIQSFNDEHLQALGRIHGGAEARAAIDIA 186
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
++F+N NLDL+YALP QTL++ D+ A+ Y HLSLY LT+EPNT F ++PP ++P
Sbjct: 187 LRHFDNVNLDLMYALPGQTLAQCRQDVETALSYRTTHLSLYHLTLEPNTLFARFPP-ALP 245
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D MQD I + Y++YE SAY++ E++HNLNYW+FGDYL
Sbjct: 246 DDDTAYEMQDWIEARTAEAGYRHYETSAYAQPHREARHNLNYWRFGDYLGIGAGAHGKLS 305
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
GN++ +++ ++ L FEFMLNALRL DG +LF +
Sbjct: 306 FPHRVLRQMRYKHPATYMAQAMAGNAVQEARDVDAAELPFEFMLNALRLTDGVPASLFHD 365
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + I +L A GLL + I+PT GR FLNDLQ+IFL +
Sbjct: 366 HTGLPLHAIRRELAQATDKGLLDPDPTVIRPTELGRRFLNDLQEIFLKS 414
>gi|194289071|ref|YP_002004978.1| coproporphyrinogen iii oxidase [Cupriavidus taiwanensis LMG 19424]
gi|193222906|emb|CAQ68911.1| Oxygen-independent coproporphyrinogen III
oxidase(Coproporphyrinogenase)(Coprogen oxidase)
[Cupriavidus taiwanensis LMG 19424]
Length = 410
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 163/349 (46%), Positives = 216/349 (61%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E YL+AL D+E SLP++ R +HT+FIGGGTPSL+S G+D LL +I+ LL
Sbjct: 63 EIPEDLYLDALRADLEQSLPLVWGRPVHTVFIGGGTPSLLSAAGMDRLLSDIRALLPLDA 122
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE EKF SY GINRLSIGIQSFN+++L LGR H +A+ AI+IA
Sbjct: 123 DAEITMEANPGTFEAEKFASYRASGINRLSIGIQSFNDRHLQALGRIHGGTEARRAIDIA 182
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F+N NLDL+YALP QTL E D+ A+ Y HLSLY LT+EPNT F K+PP ++P
Sbjct: 183 QASFDNINLDLMYALPGQTLQECQADVETALGYGTTHLSLYHLTLEPNTLFAKFPP-ALP 241
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D MQD I + Y++YE SAY++ E++HNLNYW+FGDYL
Sbjct: 242 DDDTAYEMQDWIEARTAAAGYRHYETSAYARPHREARHNLNYWRFGDYLGIGAGAHGKLS 301
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
GN++ +++ + L FEFMLNALRL DG + F +
Sbjct: 302 FPQRVLRQMRHKHPATYMAQAMAGNAVQEARDVGADELPFEFMLNALRLTDGVPASSFQD 361
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + I +L AEK GLL+ + I+PT GR FLNDLQ++FL +
Sbjct: 362 YTGLPLHTISKQLAEAEKKGLLEADLTTIRPTELGRRFLNDLQEMFLKD 410
>gi|388569531|ref|ZP_10155923.1| oxygen-independent coproporphyrinogen III oxidase [Hydrogenophaga
sp. PBC]
gi|388263280|gb|EIK88878.1| oxygen-independent coproporphyrinogen III oxidase [Hydrogenophaga
sp. PBC]
Length = 406
Score = 325 bits (832), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 222/347 (63%), Gaps = 35/347 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
++ E +YL+AL D+E SLP++ R +H++FIGGGTPSL S +D LL +++ L +
Sbjct: 59 DMPEARYLDALRADLEASLPLVWGRPVHSVFIGGGTPSLFSPEAIDRLLADVRARLPLEA 118
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE ++F ++ G+ RLSIG+QSF++ L LGR H+ QA+ A+E A
Sbjct: 119 DAEITLEANPGTFEKDRFRAFRQAGVTRLSIGVQSFDDAQLKALGRVHNGAQARAALEEA 178
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
Q F+ FNLDL+YALP QTL++ DL A+ ++PPHLS+Y LT+EPNTYF K+PP +P
Sbjct: 179 AQVFDTFNLDLMYALPGQTLAQCEADLRTALSFAPPHLSVYHLTLEPNTYFAKFPP-RLP 237
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
S+DE M D+IT++ + + YE+SAY++ G+ +HNLNYW+FGDYL
Sbjct: 238 SDDEAYEMLDRITAITGESGLQRYEVSAYARPGHACRHNLNYWRFGDYLGIGAGAHGKLS 297
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G+++A ++ + L FEFMLNALRL++GF+ F
Sbjct: 298 FAHRIARPVRVREPRLYMERALAGDAVASMDEVPRAQLPFEFMLNALRLREGFALADFMA 357
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
TG+ + I++ L+ AE GL++R+ + ++PT G FL+DLQ +FL
Sbjct: 358 STGLPLSSIDTALREAEAKGLIERDARQVRPTERGFDFLSDLQSLFL 404
>gi|264678472|ref|YP_003278379.1| TIM-barrel protein, yjbN family [Comamonas testosteroni CNB-2]
gi|262208985|gb|ACY33083.1| TIM-barrel protein, yjbN family [Comamonas testosteroni CNB-2]
Length = 344
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 200/267 (74%), Gaps = 4/267 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F AEEHP+A Q+
Sbjct: 17 RMSVAPMMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEAEEHPVALQL 76
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D
Sbjct: 77 GGSEPADLAHSARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADV 136
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVKHRIGID I SYDFVRDFVGTV+ AGC+ F+VHARNA+LK L+PK+NR+IP L
Sbjct: 137 VSVPVTVKHRIGIDKIESYDFVRDFVGTVADAGCQVFVVHARNAWLKGLSPKENREIPPL 196
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V LK+DFP L I +NGGIKT + L +DGVM+GREAY NP+ M+++D+ YY
Sbjct: 197 RYEVVAQLKRDFPGLTIAVNGGIKTDDVVQQQLQQVDGVMVGREAYHNPWWMASWDVLYY 256
Query: 251 SNLPQYKIPTRID---IINLDSENREN 274
+ + + +I+ ++ ++ E RE+
Sbjct: 257 QDESRERTREQIEEQMVLYMEREAREH 283
>gi|339325046|ref|YP_004684739.1| oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
[Cupriavidus necator N-1]
gi|338165203|gb|AEI76258.1| oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
[Cupriavidus necator N-1]
Length = 410
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 216/349 (61%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E YL+AL D+E SLP++ R +HT+FIGGGTPSL+S G+D LL +I+ LL
Sbjct: 63 EIPEDIYLDALRADLEQSLPLVWGRPVHTVFIGGGTPSLLSAAGMDRLLSDIRALLPLDA 122
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE +KF SY GINRLSIGIQSFN+++L LGR H +A+ AI+IA
Sbjct: 123 DAEITMEANPGTFEADKFASYRASGINRLSIGIQSFNDRHLQALGRIHGGAEARKAIDIA 182
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F+N NLDL+YALP QTL E D+ A+ Y HLSLY LT+EPNT F ++PP ++P
Sbjct: 183 QASFDNINLDLMYALPGQTLDECRQDVETALSYGTTHLSLYHLTLEPNTLFARFPP-ALP 241
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D MQD I + Y++YE SAY+K E++HNLNYW+FGDYL
Sbjct: 242 DDDSAYEMQDWIEARTAEAGYRHYETSAYAKPHREARHNLNYWRFGDYLGIGAGAHGKLS 301
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
GN++ +++ + L FEFMLNALRL DG + F +
Sbjct: 302 FPHRILRQMRHKHPATYMERALAGNAVQEARDVGADELPFEFMLNALRLTDGVPASSFHD 361
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + I +L AEK GLL+ + I+PT GR FLNDLQ++FL +
Sbjct: 362 YTGLPLHTISKQLAEAEKKGLLEADLTTIRPTELGRRFLNDLQEMFLKD 410
>gi|224824837|ref|ZP_03697944.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
gi|224603330|gb|EEG09506.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
Length = 313
Score = 323 bits (829), Expect = 2e-85, Method: Composition-based stats.
Identities = 141/236 (59%), Positives = 188/236 (79%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRH R F RQITR++WLYTEM TT A+L G+ L ++ EHP+A Q+G +EP
Sbjct: 1 MLDWTDRHYRFFARQITRHTWLYTEMVTTGALLYGDVARHLRYHECEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
+LA+ A++ ++WGYDE+NLN GCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+T
Sbjct: 61 ELARCARLAEEWGYDEVNLNVGCPSERVQKGAFGACLMAEPQLVADCVKAMRDAVGIDVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID + Y +VRDFVG + AGC TFIVHARNA LK L+PK+NR+IP LKY++VY
Sbjct: 121 VKHRIGIDAVEDYGYVRDFVGHIVEAGCATFIVHARNAILKGLSPKENREIPPLKYDYVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP++EI++NGG+K+ EI HL ++DGVM+GREAY NP+LM+++D +Y +
Sbjct: 181 RLKRDFPDVEILLNGGVKSNDEIARHLQHVDGVMVGREAYHNPWLMADWDARFYDD 236
>gi|333914801|ref|YP_004488533.1| yjbN family TIM-barrel protein [Delftia sp. Cs1-4]
gi|333745001|gb|AEF90178.1| TIM-barrel protein, yjbN family [Delftia sp. Cs1-4]
Length = 325
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 143/242 (59%), Positives = 185/242 (76%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TD+HCR HR ++R++ LYTEM TT A+L G+ L F AEEHP+A Q+
Sbjct: 3 RMSVAPMMDWTDKHCRYLHRLLSRHTLLYTEMVTTGALLHGDVPRHLRFEAEEHPVALQL 62
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++ +WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D
Sbjct: 63 GGSEPSDLAQAARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEAPLVADCVKAMVDV 122
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +TVKHRIGID SY+FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L
Sbjct: 123 VDMPVTVKHRIGIDKDESYEFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPL 182
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V LK+DFPEL I INGGIK + L +DGVM+GREAY NP+ ++++D YY
Sbjct: 183 RYEIVARLKQDFPELTIAINGGIKADATVQELLQQVDGVMVGREAYHNPWWLASWDALYY 242
Query: 251 SN 252
+
Sbjct: 243 GD 244
>gi|337280949|ref|YP_004620421.1| oxygen-independent coproporphyrinogen III oxidase [Ramlibacter
tataouinensis TTB310]
gi|334732026|gb|AEG94402.1| candidate oxygen-independent coproporphyrinogen III oxidase-like
protein [Ramlibacter tataouinensis TTB310]
Length = 395
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 216/347 (62%), Gaps = 35/347 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
++ E++YL+AL+ D+E +LP++ R IH+IFIGGGTPSL S +D LL +++ L +
Sbjct: 48 DMPEQRYLDALVADLESALPLVWGRTIHSIFIGGGTPSLFSPAAIDRLLGDVRARLRLEP 107
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE E+F Y G+ RLS+G+QSF++ +L LGR HD QA A+E A
Sbjct: 108 DCEITLEANPGTFEKERFRGYRAAGVTRLSVGVQSFDDAHLKALGRVHDRAQAIAAVEEA 167
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F FNLDL+YALP QTL +L DL A+ +PPHLS+Y LTIEPNTYF K+PP +P
Sbjct: 168 AGAFGTFNLDLMYALPGQTLEQLDQDLTQALALAPPHLSVYHLTIEPNTYFAKFPP-QVP 226
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D M D++T YE+SAY++ G+ +HNLNYW+FGDYL
Sbjct: 227 PDDTAYAMLDRLTERTAAAGLGRYEVSAYARPGHACRHNLNYWQFGDYLGLGAGAHGKLS 286
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G IA+ ++ + L FEFMLNALRLKDGF+ F E
Sbjct: 287 FAHRVVRQVRYREPRLYMERALAGQPIAQEDEVRRADLPFEFMLNALRLKDGFALRDFSE 346
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RTG+ + IE L+ A++ GL++R+ +++PT+ G FL+DLQ +FL
Sbjct: 347 RTGLPLTAIEGGLEEAQRRGLIERSLGHVRPTARGFDFLSDLQALFL 393
>gi|398804027|ref|ZP_10563030.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
gi|398095035|gb|EJL85385.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
Length = 352
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 143/241 (59%), Positives = 191/241 (79%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR FHR ++R++ LYTEM TT A++ G+ + L FNAEEHP+A Q+
Sbjct: 21 RLSVAPMMDWTDRHCRHFHRLLSRHALLYTEMVTTGALIHGDVERHLRFNAEEHPVALQL 80
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA+ A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D
Sbjct: 81 GGSEPADLAQCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMVDV 140
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVKHRIGID SY+FVRDFVGTVS AGC+ FIVHARNA+LK L+PK+NR++P L
Sbjct: 141 VAVPVTVKHRIGIDKGESYEFVRDFVGTVSEAGCKVFIVHARNAWLKGLSPKENREVPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V+ LK++FP L I INGGI T++E+ HL +DGVM+GREAY NP+ ++++D ++
Sbjct: 201 RYELVHRLKREFPHLGICINGGINTQEEVAGHLAALDGVMIGREAYHNPWWLASWDSAFF 260
Query: 251 S 251
Sbjct: 261 G 261
>gi|365091176|ref|ZP_09328683.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
gi|363416294|gb|EHL23414.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
Length = 328
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 183/244 (75%), Gaps = 3/244 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQV 70
+S+APMM+ TDRHCR FHR +TR + LYTEM AI+ G ++H L FNAEEHP+A Q+
Sbjct: 1 MSVAPMMDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIHGGTERH-LRFNAEEHPVALQL 59
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G NEP KLA++A++ +WGY EINLNCGCPS+RVQ G FGA LM P LV+DC+KAM+D
Sbjct: 60 GGNEPDKLAEAARLGAQWGYGEINLNCGCPSDRVQRGAFGASLMKSPQLVADCVKAMKDV 119
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +TVKHRIGID + Y FVRDF+GTV+ AGC FIVHARNA+L+ L+PK+NR +P L
Sbjct: 120 VDVPVTVKHRIGIDKVEDYGFVRDFIGTVADAGCSVFIVHARNAWLQGLSPKENRDVPPL 179
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V+ LK +FP+ I INGGI T + L ++DGVM+GREAY NP+ ++ +D YY
Sbjct: 180 RYEVVHRLKAEFPQFTIAINGGITTDAVVQEQLTHLDGVMIGREAYHNPWWLARWDQLYY 239
Query: 251 SNLP 254
P
Sbjct: 240 GGAP 243
>gi|395006482|ref|ZP_10390300.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
gi|394315574|gb|EJE52368.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
Length = 341
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEE 63
S ++ ++S+APMM+ TDRHCR FHR +TR + LYTEM AI+ G ++H L FNAEE
Sbjct: 14 STFSPWRMSVAPMMDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIHGGTERH-LRFNAEE 72
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G NEP+ LA++A++ +WGY EINLNCGCPS+RVQ G FGA LM P LV+D
Sbjct: 73 HPVALQLGGNEPELLAQAARLGAQWGYGEINLNCGCPSDRVQRGAFGASLMKAPQLVADG 132
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAM+D V++ +TVKHRIGID + Y FVRDFVGTV+ AGC FIVHARNA+L+ L+PK+
Sbjct: 133 VKAMKDVVDVPVTVKHRIGIDKVEDYGFVRDFVGTVADAGCTVFIVHARNAWLQGLSPKE 192
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR IP L+Y V+ LK++FP+L I INGGI+ + + L ++DGVM+GREAY NP+ ++
Sbjct: 193 NRDIPPLRYEVVHRLKQEFPQLTIAINGGIQADEVVLEQLQHLDGVMIGREAYHNPWWLA 252
Query: 244 NFDLNYYSNLPQYKIPTRIDIINLDSENRE 273
+D YY P +++ +D RE
Sbjct: 253 RWDQIYYGGEPCALTREEVELAMVDYMERE 282
>gi|121603727|ref|YP_981056.1| putative oxygen-independent coproporphyrinogen III oxidase
[Polaromonas naphthalenivorans CJ2]
gi|120592696|gb|ABM36135.1| putative oxygen-independent coproporphyrinogen III oxidase
[Polaromonas naphthalenivorans CJ2]
Length = 396
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 218/350 (62%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E++Y++AL+ D+E SLP++ R +H+IFIGGGTPSL S +D LL +I+ L +
Sbjct: 48 GELPEQRYIDALVADLEASLPLVWGRTVHSIFIGGGTPSLFSPQAIDRLLGDIRARLRLE 107
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE ++F ++ G+NRLSIG+QSF++ +L LGR HD QA A+E
Sbjct: 108 ADCEITLEANPGTFEKDRFRAFCSAGVNRLSIGVQSFDDVHLKALGRVHDRAQAIAAVEE 167
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A Q F+ FNLD++YALP QTL D+ A+ PPH+S+Y LTIEPNTYF K+PPL +
Sbjct: 168 AAQAFDTFNLDIMYALPGQTLENQAQDMRQALAMQPPHISIYHLTIEPNTYFAKFPPL-I 226
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P D M D+IT + + + YE+SAY++ G+ HNLNYW+FGDYL
Sbjct: 227 PEEDTAYAMLDQITEMTEGAGLQRYEVSAYARPGHRCFHNLNYWQFGDYLGIGAGAHSKL 286
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++A+ ++ + L FEFMLNALRLKDGF F
Sbjct: 287 SFAHRVVRQVRAREPRLYMDKALAGNAVAQETEVSRADLPFEFMLNALRLKDGFKLQDFA 346
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
E+TG+ I+ L+ AE+ GL++R+ + KPT G FLNDLQ +FL +
Sbjct: 347 EKTGLPFTAIQKGLEEAERKGLIERDFVHAKPTERGFDFLNDLQSLFLAD 396
>gi|121607273|ref|YP_995080.1| tRNA-dihydrouridine synthase A [Verminephrobacter eiseniae EF01-2]
gi|121551913|gb|ABM56062.1| TIM-barrel protein, yjbN family [Verminephrobacter eiseniae EF01-2]
Length = 360
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 182/243 (74%), Gaps = 3/243 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQ 69
++S+APMM+ TDRHCR FHR +TR + LYTEM A+L G ++H L NAEEHP+A Q
Sbjct: 31 RLSVAPMMDWTDRHCRYFHRLLTRQTRLYTEMVNAGAVLHGGTERH-LRLNAEEHPVALQ 89
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G NEP LA++A++ +WGYDEINLNCGCPS+RVQ G FGA LM P V+DC+KAMRD
Sbjct: 90 LGGNEPADLARAARLGAQWGYDEINLNCGCPSDRVQRGAFGARLMQTPQRVADCVKAMRD 149
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V+ +TVKHRIGID SY FVRDFVG V+ AGC FIVHARNA+L+ L+PK+NR+IP
Sbjct: 150 MVDRPVTVKHRIGIDQGQSYGFVRDFVGVVADAGCSVFIVHARNAWLQGLSPKENREIPP 209
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y V+ LK DFP L ++INGGI T + L+ +DGVM+GR+AY P+ ++ +D Y
Sbjct: 210 LRYALVHQLKADFPRLTVVINGGIATDAVVQQQLHLLDGVMVGRQAYHQPWWLARWDALY 269
Query: 250 YSN 252
Y+N
Sbjct: 270 YAN 272
>gi|319761727|ref|YP_004125664.1| oxygen-independent coproporphyrinogen iii oxidase [Alicycliphilus
denitrificans BC]
gi|317116288|gb|ADU98776.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
denitrificans BC]
Length = 411
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 154/348 (44%), Positives = 211/348 (60%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y AL+ D+E +LP++ R +H+IFIGGGTPSL S +D LL +I+ L
Sbjct: 65 LPEARYTAALVADLEAALPLVWGRTVHSIFIGGGTPSLFSPEAMDRLLGDIRARLPLDAG 124
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
+TLEANP TFE E+F +Y G+ RLSIG+QSFN+++L LGR HD QA A+E A
Sbjct: 125 CEVTLEANPGTFEKERFRAYRGAGVTRLSIGVQSFNDRHLQALGRVHDRAQALAAVEEAA 184
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
Q F FNLD++YALP QT +E D+ A+ +PPH+S+Y LTIEPNTYF KYPP +P
Sbjct: 185 QAFETFNLDIMYALPGQTPAEQEQDMRQALALAPPHISIYHLTIEPNTYFAKYPP-RLPE 243
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D+ M D+IT L YE+SAY++ G++ QHN NYW+FGDYL
Sbjct: 244 DDQAYAMLDRITELTAAAGLSRYEVSAYAREGHQCQHNRNYWQFGDYLGIGAGAHSKLSF 303
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +IA+ + + + L FEFMLNALRL++GF+ F ER
Sbjct: 304 AHRIVRQVRLRDPQLYMTGALAGRAIAQDEDVRRADLPFEFMLNALRLREGFALQDFTER 363
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG + I L+ AE GL+ R+ +++PT G FL+DLQ +FL +
Sbjct: 364 TGQPLTAIAQGLQQAEARGLIARDMGHVRPTERGFDFLSDLQALFLGD 411
>gi|120612224|ref|YP_971902.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax citrulli AAC00-1]
gi|120590688|gb|ABM34128.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax citrulli AAC00-1]
Length = 390
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 220/350 (62%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E++YL+AL+ D+E +LP++ R +H++FIGGGTPSL S +D L+ ++ L +
Sbjct: 42 GALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPSLFSPQAIDQLIGGVRARLRLE 101
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE ++F +Y G+ RLS+G+QSF++++L LGR HD QA A++
Sbjct: 102 ADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQE 161
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A Q F+ FNLD++YALP Q+L +L D+ A+ PPHLS+Y LTIEPNTYF ++PP+ +
Sbjct: 162 AAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPV-V 220
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D M D+IT++ + + YEISAYS+ G++ HN NYW+FGDYL
Sbjct: 221 PEDDLAYAMLDRITAMTEAAGLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKL 280
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++A+ ++ + L FEFMLNALRL++GF+ F
Sbjct: 281 SFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLPFEFMLNALRLREGFALQDFM 340
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+RTG+ + I L A + GL+ R+ ++PT G FL+DLQ++FL +
Sbjct: 341 DRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD 390
>gi|299531032|ref|ZP_07044445.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni S44]
gi|298720989|gb|EFI61933.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni S44]
Length = 327
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 198/266 (74%), Gaps = 4/266 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F AEEHP+A Q+G
Sbjct: 1 MSVAPMMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEAEEHPVALQLG 60
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V
Sbjct: 61 GSEPADLAHSARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADVV 120
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+ +TVKHRIGID I SYDFVRDFVGTV+ AGC+ F+VHARNA+LK L+PK+NR+IP L+
Sbjct: 121 SVPVTVKHRIGIDKIESYDFVRDFVGTVADAGCQVFVVHARNAWLKGLSPKENREIPPLR 180
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y V LK+DFP L I +NGGIKT + L +DGVM+GREAY NP+ M+++D YY
Sbjct: 181 YEVVAQLKRDFPGLTIAVNGGIKTDDVVQQQLQQVDGVMVGREAYHNPWWMASWDALYYQ 240
Query: 252 NLPQYKIPTRID---IINLDSENREN 274
+ + + +I+ ++ ++ E RE+
Sbjct: 241 DESRERTREQIEEQMVLYMEREAREH 266
>gi|326318284|ref|YP_004235956.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
avenae subsp. avenae ATCC 19860]
gi|323375120|gb|ADX47389.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 416
Score = 322 bits (824), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 219/350 (62%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E++YL+AL+ D+E +LP++ R +H++FIGGGTPSL S +D L+ ++ L +
Sbjct: 68 GALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPSLFSPEAIDRLISGVRARLRLE 127
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE ++F +Y G+ RLS+G+QSF++++L LGR HD QA A++
Sbjct: 128 ADAEITLEANPGTFEKDRFRAYRTAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQE 187
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A Q F+ FNLD++YALP Q+L +L D+ A+ PPHLS+Y LTIEPNTYF K+PP+ +
Sbjct: 188 AAQAFDTFNLDIMYALPGQSLEDLEQDVALALSLQPPHLSIYHLTIEPNTYFAKFPPV-V 246
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D M D+IT + + + YEISAY++ G++ HN NYW+FGDYL
Sbjct: 247 PEDDLAYAMLDRITEMTETAGLRRYEISAYARPGHQCVHNTNYWQFGDYLGIGAGAHGKL 306
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++A+ ++ + L FEFMLNALRL++GF+ F
Sbjct: 307 SFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLPFEFMLNALRLREGFALQDFA 366
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
+RTG+ + I L A + GL+ R+ ++PT G FL+DLQ++FL +
Sbjct: 367 DRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD 416
>gi|398806941|ref|ZP_10565836.1| putative oxygen-independent coproporphyrinogen III oxidase
[Polaromonas sp. CF318]
gi|398086775|gb|EJL77383.1| putative oxygen-independent coproporphyrinogen III oxidase
[Polaromonas sp. CF318]
Length = 397
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 219/351 (62%), Gaps = 35/351 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
++ G + E++Y++A++ D+E +LP++ R +H+IFIGGGTPSL S +D LL +I+ L
Sbjct: 46 EAVGEMPEQRYIDAVIADLEAALPLVWGRTVHSIFIGGGTPSLFSPQAIDRLLGDIRARL 105
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ + ITLEANP TFE ++F ++ G+ RLS+G+QSF++++L LGR HD QA A
Sbjct: 106 RLEADCEITLEANPGTFEKDRFKAFRAAGVTRLSVGVQSFDDQHLKALGRVHDRAQAIAA 165
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+E A Q F+ FNLD++YALP QT+ L D+ A+ PPH+S+Y LTIEPNTYF K+PP
Sbjct: 166 VEEAAQAFDTFNLDIMYALPGQTMESLERDMRQALALQPPHISIYHLTIEPNTYFAKFPP 225
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
+ +P D M DKIT L + + YE+SAY+K G++ HNLNYW+FGDYL
Sbjct: 226 V-VPEEDTAYAMLDKITELTEAAGLRRYEVSAYAKAGHQCFHNLNYWQFGDYLGLGAGAH 284
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G ++ + ++ + L FEFMLNALRL++GF
Sbjct: 285 SKLSFAHRVVRQVRFREPKLYMEKALAGEAVTQETEVSRADLPFEFMLNALRLREGFKLQ 344
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F E+TG+ + I L+ AE+ GL++R+ +KPT G FLNDLQ +FL
Sbjct: 345 DFTEKTGLPVTAIRQGLEEAERKGLIERDFARVKPTERGFDFLNDLQSLFL 395
>gi|398807368|ref|ZP_10566246.1| tRNA dihydrouridine synthase A [Variovorax sp. CF313]
gi|398089378|gb|EJL79894.1| tRNA dihydrouridine synthase A [Variovorax sp. CF313]
Length = 329
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/263 (56%), Positives = 191/263 (72%), Gaps = 1/263 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L F+AEEHP+A Q+
Sbjct: 10 RLSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGALVHGDVPRHLRFHAEEHPVALQL 69
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D
Sbjct: 70 GGSEPADLAHCAKLGEEWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDV 129
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVKHRIGID I SY+FVRDFVG VS AGC+TFIVHARNA+LK L+PKQNR+IP L
Sbjct: 130 VSVPVTVKHRIGIDKIESYEFVRDFVGQVSEAGCQTFIVHARNAWLKGLSPKQNREIPPL 189
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V+ LK +FP L INGGI ++ HL +DGVM+GREAY NP+ ++ +D +Y
Sbjct: 190 RYELVHRLKHEFPSLRFSINGGISVSAQVHEHLRLLDGVMVGREAYHNPWWLAEWDAEFY 249
Query: 251 SNLPQYKIPTRIDIINLDSENRE 273
Q ++ + D RE
Sbjct: 250 GAEAQSLTRDEVESLMCDYMARE 272
>gi|89900729|ref|YP_523200.1| tRNA-dihydrouridine synthase A [Rhodoferax ferrireducens T118]
gi|89345466|gb|ABD69669.1| TIM-barrel protein, yjbN family [Rhodoferax ferrireducens T118]
Length = 331
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 190/244 (77%), Gaps = 1/244 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
++ ++S+APM++ TDRHCR FHR +T+++ LYTEM TT A++ G+ L +N +EHP+A
Sbjct: 10 DRWRLSVAPMLDWTDRHCRYFHRLLTQHALLYTEMVTTGALIYGDVSRHLRYNEQEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA+ AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 70 LQLGGSEPADLARCAKLGEEWGYDEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
D V + +TVKHRIGID SY+FVRDFVG+VS AGCRTFIVHARNA+LK L+PK+NR +
Sbjct: 130 VDVVSVPVTVKHRIGIDKTESYEFVRDFVGSVSEAGCRTFIVHARNAWLKGLSPKENRDV 189
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L+Y Y LK+DFP L I+INGGI + +I HL ++DGVMLGREAY NP+ ++++D
Sbjct: 190 PPLRYELAYQLKRDFPSLVIVINGGITSSAQIAGHLLHLDGVMLGREAYHNPWWLASWDA 249
Query: 248 NYYS 251
++
Sbjct: 250 TFFG 253
>gi|237745874|ref|ZP_04576354.1| coproporphyrinogen III oxidase [Oxalobacter formigenes HOxBLS]
gi|229377225|gb|EEO27316.1| coproporphyrinogen III oxidase [Oxalobacter formigenes HOxBLS]
Length = 402
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/349 (48%), Positives = 219/349 (62%), Gaps = 36/349 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +YL+ L D+ELSLP+I NRKI +IFIGGGTPSL S G+D LL +++LL +
Sbjct: 55 LPENEYLKVLRRDLELSLPLIENRKISSIFIGGGTPSLFSAGGIDKLLSFVRELLPVLPD 114
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
I+LEANP TFE KF SY GINRLSIG+QSF + L+ LGR HD+ +A+ A+E A
Sbjct: 115 AEISLEANPGTFEAGKFQSYRRSGINRLSIGVQSFTQERLHELGRIHDADEARAAVETAG 174
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
YF+NFNLDL+Y LP QTL +L D++ A+ Y P HLS Y LTIEPNTY+FK+PP+ +P
Sbjct: 175 HYFDNFNLDLMYGLPFQTLDQLKDDVSIALSYKPAHLSFYQLTIEPNTYYFKHPPV-LPD 233
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKI-- 880
D MQ I + Y++YE+SAY+++G + HN NYW FGDYLG A KI
Sbjct: 234 EDAIDEMQTWIETSTAATGYEHYEVSAYARSGRQCLHNRNYWLFGDYLGIGAAAHSKITL 293
Query: 881 ---------------------------EKKC------LIFEFMLNALRLKDGFSPNLFFE 907
E++ L FEFMLNALRL DGFSP LF E
Sbjct: 294 PDQRIIRQMRLRNPHLYMQGIKQGIPLEEQFEVPVSDLGFEFMLNALRLTDGFSPALFRE 353
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + +I+ L A LGLL + +I+PT G+ FLNDLQQIFL +
Sbjct: 354 RTGLPLSVIDEGLARAAHLGLLHISPLHIRPTELGKRFLNDLQQIFLPD 402
>gi|17546880|ref|NP_520282.1| coproporphyrinogen III oxidase [Ralstonia solanacearum GMI1000]
gi|17429180|emb|CAD15868.1| putative cog0635, coproporphyrinogen III oxidase and related fe-s
oxidoreductases oxidoreductase protein [Ralstonia
solanacearum GMI1000]
Length = 424
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 223/353 (63%), Gaps = 38/353 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
I E ++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 70 AGIPEDRFLAAIRQDLEAALPMVWGRRVHTIFIGGGTPSLLSARGLDTLLSDIRMLLPVD 129
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+I
Sbjct: 130 ADAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDTHLQALGRIHSAAEARAAIDI 189
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF K+PP ++
Sbjct: 190 ARAHFDNINLDLMFALPGQTLAECEADVEAALSFGTSHVSLYHLTLEPNTYFAKHPP-AL 248
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--------- 871
P +D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 249 PDDDTAFAMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKL 308
Query: 872 ----------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
+ + ++++ L FEFMLNALRL DGF
Sbjct: 309 SFPHRVIRDMRHKHPETYLRQAETAGGATVVQEQREVDAADLPFEFMLNALRLTDGFPVT 368
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
LF ERTG+ ++ IE +L AE+ GLL ++ I+PT G+ FLNDLQ +FL +
Sbjct: 369 LFQERTGLPLRGIERELDAAERRGLLVHDHATIRPTELGQRFLNDLQALFLAD 421
>gi|167837504|ref|ZP_02464387.1| coproporphyrinogen III oxidase [Burkholderia thailandensis MSMB43]
gi|424903244|ref|ZP_18326757.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
thailandensis MSMB43]
gi|390931117|gb|EIP88518.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
thailandensis MSMB43]
Length = 405
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 219/353 (62%), Gaps = 35/353 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
K G + E+ YL AL D+E +LP++ R++HT+FIGGGTPSL+S GLD LL +++ LL
Sbjct: 53 KDGGALPERDYLGALRADLEHALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL 112
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE KF + G+NRLSIGIQSF+ +L LGR HD+ QA+ A
Sbjct: 113 PLDADAEITLEANPGTFEAAKFAQFRASGVNRLSIGIQSFSEAHLKALGRIHDATQARAA 172
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
EIA + F+NFNLDL++ALPNQTL E DL A+ ++PPHLSLY LT+EPNTYF K+PP
Sbjct: 173 AEIAARTFDNFNLDLMFALPNQTLDECRADLETALSFAPPHLSLYHLTLEPNTYFAKFPP 232
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQD + Y YE+SAY+K + +HNLNYW+FGDYL
Sbjct: 233 -TVPDDDTSADMQDWLHERTAQAGYARYEVSAYAKPHRQCRHNLNYWRFGDYLGIGAGAH 291
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G ++ + +++ L FEFMLNALRL +G +
Sbjct: 292 TKLSFPNRILRQARYKHPATFIEQAKAGAAVQEEREVGPHDLPFEFMLNALRLVEGVPTH 351
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+++ I L AE+ GL+ ++ I PT G+ FLNDLQ +FL +
Sbjct: 352 SFAERTGMSLASIGPALAQAERRGLIVHDHTRIAPTPLGQRFLNDLQALFLRD 404
>gi|83746456|ref|ZP_00943507.1| Coproporphyrinogen oxidase, anaerobic [Ralstonia solanacearum
UW551]
gi|83726787|gb|EAP73914.1| Coproporphyrinogen oxidase, anaerobic [Ralstonia solanacearum
UW551]
Length = 425
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 224/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 72 GIPEERFLAAVRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAQGLDTLLSDIRMLLPVDA 131
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+IA
Sbjct: 132 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHSAAEARAAIDIA 191
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 192 RAHFDNINLDLMFALPGQTLAECEADVEAALSFETSHVSLYHLTLEPNTYFAKYPP-ALP 250
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 251 DDDTAFGMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 310
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL GF L
Sbjct: 311 FPHRVLREMRHRHPETYLRQAETAGGAAVLQEQREVDAADLPFEFMLNALRLTGGFPVTL 370
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 371 FQERTGLPLRAIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 422
>gi|421897803|ref|ZP_16328170.1| cog0635, coproporphyrinogen III oxidase and related fe-s
oxidoreductases protein, partial [Ralstonia solanacearum
MolK2]
gi|206589009|emb|CAQ35971.1| cog0635, coproporphyrinogen III oxidase and related fe-s
oxidoreductases protein, partial [Ralstonia solanacearum
MolK2]
Length = 405
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 224/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 52 GIPEERFLAAVRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAQGLDTLLSDIRMLLPVDA 111
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+IA
Sbjct: 112 DAEITMEANPGTFEAERFRSYHASGVNRLSIGIQSFNDAHLQALGRIHSAAEARAAIDIA 171
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 172 RAHFDNINLDLMFALPGQTLAECEADVEAALSFETSHVSLYHLTLEPNTYFAKYPP-ALP 230
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 231 DDDTAFGMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 290
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL GF L
Sbjct: 291 FPHRVLREMRHRHPETYLRQAETAGGAAVLQEQREVDAADLPFEFMLNALRLTGGFPVTL 350
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 351 FQERTGLPLRAIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 402
>gi|121605287|ref|YP_982616.1| tRNA-dihydrouridine synthase A [Polaromonas naphthalenivorans CJ2]
gi|120594256|gb|ABM37695.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas naphthalenivorans
CJ2]
Length = 337
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 142/269 (52%), Positives = 195/269 (72%), Gaps = 1/269 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
N ++S+APMM+ +DRHCR FHR ++R++ LYTEM TT A++ G+ L FNAEEHP+A
Sbjct: 15 NPWRLSVAPMMDWSDRHCRYFHRLLSRHALLYTEMVTTGALIHGDVGRHLRFNAEEHPVA 74
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA A++ ++WGY EIN+NCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 75 LQLGGSEPADLAHCARLGEQWGYSEININCGCPSERVQRGAFGACLMAEPKLVADCVKAM 134
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
D+V + +TVKHRIGID Y+FVRDFVGTVS AGC TFIVHARNA+LK L+PK+NR++
Sbjct: 135 VDAVSVPVTVKHRIGIDREERYEFVRDFVGTVSEAGCDTFIVHARNAWLKGLSPKENREV 194
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L+Y V+ LKK+F L I +NGGI T +++ L +DGVM+GREAY NP+ ++++D
Sbjct: 195 PPLRYELVHRLKKEFAHLTICVNGGITTGEQVQGQLLELDGVMIGREAYHNPWWLASWDA 254
Query: 248 NYYSNLPQYKIPTRIDIINLDSENRENEG 276
+++ + +++ D RE G
Sbjct: 255 DFFGAGGESITREQVEAQMCDYMVREAAG 283
>gi|241767031|ref|ZP_04764816.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
delafieldii 2AN]
gi|241362434|gb|EER58378.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
delafieldii 2AN]
Length = 418
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 217/368 (58%), Gaps = 35/368 (9%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + + E +YL+AL+ D+E +LP++ R +H+IFIGGGTPSL S
Sbjct: 52 KCPYCDFNSHEWRSAGGAQELPEARYLDALVADLEAALPLVWGRSVHSIFIGGGTPSLFS 111
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
+D L+ +I+ L + ITLEANP TFE ++F ++ G+ RLS+G+QSFN+++L
Sbjct: 112 PQSIDRLIGDIRARLPLAADCEITLEANPGTFEKDRFRAFRAAGVTRLSVGVQSFNDRHL 171
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR HD QA A++ A F+ FNLD++YALP QTL EL D+ A+ +PPHLS+Y
Sbjct: 172 QALGRVHDRAQALAAVQEAASAFDTFNLDIMYALPGQTLQELEQDMATALALAPPHLSVY 231
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LTIEPNTYF KYPP ++P +D+ M D+IT + YEISAY++ G+ HN N
Sbjct: 232 HLTIEPNTYFAKYPP-AIPEDDQAYAMLDRITEMTGQAGLARYEISAYARPGHACFHNTN 290
Query: 863 YWKFGDYL----------------------------------GNSIAKSKKIEKKCLIFE 888
YW+FGDYL G ++A + + + L FE
Sbjct: 291 YWQFGDYLGLGAGAHSKLSFAHRVVRQARFRDPRLYMDNALAGRAVALDEDVRRADLPFE 350
Query: 889 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 948
FMLNALRL++GF+ F ERTG ++ I L AE+ GL+ R+ ++PT G FLND
Sbjct: 351 FMLNALRLREGFALQDFVERTGQSLTAIAGALDEAERKGLITRDLGRVRPTERGVDFLND 410
Query: 949 LQQIFLNN 956
LQ +FL +
Sbjct: 411 LQALFLTD 418
>gi|113866971|ref|YP_725460.1| coproporphyrinogen III oxidase [Ralstonia eutropha H16]
gi|113525747|emb|CAJ92092.1| Coproporphyrinogen III oxidase, Fe-S oxidoreductase [Ralstonia
eutropha H16]
Length = 410
Score = 319 bits (818), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 214/349 (61%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E YL+AL D+E SLP++ R +HT+FIGGGTPSL+S G+D LL +I+ LL
Sbjct: 63 EIPEDIYLDALRADLEQSLPLVWGRPVHTVFIGGGTPSLLSAAGMDRLLSDIRALLPLDA 122
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EA P TFE +KF SY GINRLSIGIQSFN+++L LGR H +A+ AI+IA
Sbjct: 123 DAEITMEAKPGTFEADKFASYRASGINRLSIGIQSFNDRHLQALGRIHGGAEARKAIDIA 182
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F+N NLDL+YALP QTL E D+ A+ Y HLSLY LT+EPNT F K+PP ++P
Sbjct: 183 QASFDNINLDLMYALPGQTLDECRQDVEAALSYGTTHLSLYHLTLEPNTLFAKFPP-ALP 241
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D MQD I + Y++YE SAY+K E++HNLNYW+FGDYL
Sbjct: 242 DDDSAYEMQDWIEARTAQAGYRHYETSAYAKPHREARHNLNYWRFGDYLGIGAGAHGKLS 301
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
GN++ +++ + L FEFMLNALRL DG + F +
Sbjct: 302 FPHRILRQMRHKHPATYMERALAGNAVQEARDVGADELPFEFMLNALRLTDGVPASSFHD 361
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + I +L AEK GLL+ + I+ T GR FLNDLQ++FL +
Sbjct: 362 YTGLPLHTISKQLAEAEKKGLLEADLTTIRATELGRRFLNDLQEMFLKD 410
>gi|319794422|ref|YP_004156062.1| tim-barrel protein, yjbn family [Variovorax paradoxus EPS]
gi|315596885|gb|ADU37951.1| TIM-barrel protein, yjbN family [Variovorax paradoxus EPS]
Length = 324
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 191/262 (72%), Gaps = 1/262 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
IS+APMM+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L FNAEEHP+A Q+G
Sbjct: 6 ISVAPMMDWTDRHCRYFHRLMSRHALLYTEMVTTGALVHGDVPRHLRFNAEEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V
Sbjct: 66 GSEPADLAHCAKLGEEWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+ +TVKHRIGID I Y+FVRDFVG VS AGC TFIVHARNA+L+ L+PKQNR+IP L+
Sbjct: 126 SVPVTVKHRIGIDKIERYEFVRDFVGQVSEAGCDTFIVHARNAWLQGLSPKQNREIPPLR 185
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y V+ LK DFP L+ INGGI +++ HL +DGVM+GREAY NP+ ++ +D ++
Sbjct: 186 YALVHRLKHDFPGLKFSINGGISVNEQVHEHLRLLDGVMVGREAYHNPWWLAEWDAEFFG 245
Query: 252 NLPQYKIPTRIDIINLDSENRE 273
PQ ++ + D RE
Sbjct: 246 AAPQPLTREEVESLMCDYMVRE 267
>gi|421891387|ref|ZP_16322191.1| Coproporphyrinogen dehydrogenase [Ralstonia solanacearum K60-1]
gi|378963262|emb|CCF98939.1| Coproporphyrinogen dehydrogenase [Ralstonia solanacearum K60-1]
Length = 425
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 224/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E ++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 72 GIPEARFLAAVRQDLEAALPMVWGRRVHTIFIGGGTPSLLSARGLDTLLSDIRMLLPVDA 131
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H++ +A+ AI+IA
Sbjct: 132 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHNAAEARAAIDIA 191
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 192 RAHFDNINLDLMFALPGQTLAECEADVEAALSFETSHVSLYHLTLEPNTYFAKYPP-ALP 250
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 251 DDDTAFGMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 310
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL GF L
Sbjct: 311 FPHRVLREMRHRHPETYLRQAETAGGAAVVQEQREVDAADLPFEFMLNALRLTGGFPVTL 370
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 371 FQERTGLPLRTIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 422
>gi|291612876|ref|YP_003523033.1| oxygen-independent coproporphyrinogen III oxidase [Sideroxydans
lithotrophicus ES-1]
gi|291582988|gb|ADE10646.1| oxygen-independent coproporphyrinogen III oxidase [Sideroxydans
lithotrophicus ES-1]
Length = 399
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/350 (46%), Positives = 223/350 (63%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I EK+Y+ AL+ D+E++LP+I RK++T+F GGGTPSL+S L +L+ ++ LL
Sbjct: 49 GAIPEKQYVAALVRDLEMALPLIWGRKVYTVFFGGGTPSLLSGEVLAEILRQVRMLLPLD 108
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
N ITLEANP T E +KF + G+NRLS+GIQSFN+ +L LGR H S +A+ AI I
Sbjct: 109 INAEITLEANPGTVEADKFARFREAGVNRLSLGIQSFNDTHLQALGRIHSSAEARSAIGI 168
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q+F+N NLDL+YALP QTL E + D+ A+QY P HLS Y LT+EPNT F PP +
Sbjct: 169 AQQHFDNINLDLMYALPQQTLEEALQDVQTALQYRPQHLSCYHLTLEPNTLFAHQPP-PL 227
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--------- 871
P +D ++ MQ I +LL + Y++YE SA+++ G S+HNLNYW+FGDYLG
Sbjct: 228 PDDDASSDMQLAIEALLATHGYQHYETSAFAQPGRRSRHNLNYWQFGDYLGIGAGAHSKL 287
Query: 872 -------------------NSIAKSKKIEKKC------LIFEFMLNALRLKDGFSPNLFF 906
++A+ + ++ + L FEFM+NALRL +GF LF
Sbjct: 288 SFHDKVLRQARYKQPQAYMEAVARGEPVQDEHEVAHAELAFEFMMNALRLNEGFDSTLFQ 347
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERT + + I +L AEK GLL +++K I PT GR FLNDL Q+FL++
Sbjct: 348 ERTSLPLLSIRRELDAAEKRGLLFQDHKKIAPTEAGRRFLNDLLQLFLHD 397
>gi|300703569|ref|YP_003745171.1| coproporphyrinogen dehydrogenase [Ralstonia solanacearum CFBP2957]
gi|299071232|emb|CBJ42550.1| Coproporphyrinogen dehydrogenase [Ralstonia solanacearum CFBP2957]
Length = 425
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 223/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E ++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 72 GIPEARFLAAVRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAQGLDTLLSDIRMLLPVDA 131
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+IA
Sbjct: 132 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHSAAEARAAIDIA 191
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 192 RAHFDNINLDLMFALPGQTLAECEADVEAALSFETSHVSLYHLTLEPNTYFAKYPP-ALP 250
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 251 DDDTAFGMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 310
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL GF L
Sbjct: 311 FPHRVLREMRHRHPETYLRQAETASGAAVVQEQREVDAADLPFEFMLNALRLTGGFPVTL 370
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 371 FQERTGLPLRAIERELDAAEQRGLLARDHVAIRPTELGQRFLNDLQALFLAD 422
>gi|91787237|ref|YP_548189.1| putative oxygen-independent coproporphyrinogen III oxidase
[Polaromonas sp. JS666]
gi|91696462|gb|ABE43291.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Polaromonas sp. JS666]
Length = 394
Score = 318 bits (816), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 218/348 (62%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E++YL+AL+ D+E +LP++ R +H+IFIGGGTPSL S +D LL +I+ L +
Sbjct: 46 GEMPEQRYLDALIADLEAALPLVWGRTVHSIFIGGGTPSLFSPQAIDRLLGDIRARLRLE 105
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP TFE ++F ++ G+ RLS+G+QSF++++L LGR HD QA A+E
Sbjct: 106 ADCEITLEANPGTFEKDRFKAFRSAGVTRLSVGVQSFDDRHLKALGRVHDRAQAIAAVEE 165
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A Q F+ FNLD++YALP QTL L D+ A+ PPH+S+Y LTIEPNTYF K+PP ++
Sbjct: 166 AAQAFDTFNLDIMYALPGQTLDNLAQDMRQALALQPPHISIYHLTIEPNTYFAKFPP-AI 224
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P D M DKIT + + + YE+SAY++ G++ HNLNYW+FGDYL
Sbjct: 225 PEEDMAYAMLDKITEMTEGAGLQRYEVSAYARAGHQCFHNLNYWQFGDYLGIGAGAHGKL 284
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G+++ + ++ + L FEFMLNALRL++GF F
Sbjct: 285 SFAHRVVRQVRYRDPKLYMEKALAGDAVTQETEVSRTELPFEFMLNALRLREGFKLQDFC 344
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
++TG+ + I+ L+ E+ GLL+R+ +KPT G FLNDLQ +FL
Sbjct: 345 DKTGLPLTAIQQGLEEGERKGLLERDFVRVKPTERGFDFLNDLQSLFL 392
>gi|347820391|ref|ZP_08873825.1| putative oxygen-independent coproporphyrinogen III oxidase
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 414
Score = 318 bits (816), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 219/368 (59%), Gaps = 36/368 (9%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY N S G++ E++Y +AL D+E +LP++ R +H++FIGGGTPSL S
Sbjct: 49 KCPY-CDFNSHAWHAGSAGDLPEQRYTDALFADLEAALPLVWGRMVHSVFIGGGTPSLFS 107
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
+D L+ ++ LL + ITLEANP TFE E+F ++ G+ RLS+G+QSFN+++L
Sbjct: 108 PRSIDRLIGGVRARLLLAPDCEITLEANPGTFEKERFRAFRTAGVTRLSVGVQSFNDRHL 167
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR HD QA A++ A Q F+ FNLDL+YALP QT EL D+ A+ PPHLS+Y
Sbjct: 168 QALGRVHDGAQALAAVQEAAQAFDCFNLDLMYALPGQTPQELEQDVQTALALDPPHLSVY 227
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
L+IEPNT+F K+PP ++P +D+ M D+IT + + YE+SAY++ G + HN N
Sbjct: 228 HLSIEPNTWFAKHPP-ALPGDDQAYAMLDRITEMTGHAGLARYEVSAYARAGQQCSHNTN 286
Query: 863 YWKFGDYL----------------------------------GNSIAKSKKIEKKCLIFE 888
YW+FGDYL G ++A+ + + L FE
Sbjct: 287 YWRFGDYLGIGAGAHSKLSFAHRVLRQVRLREPRRYMDGALAGRALAQEHDVRRADLPFE 346
Query: 889 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 948
FMLNALRL++GF+ F RTG+ + L+ AE+ GL++R+ ++PT G FLND
Sbjct: 347 FMLNALRLREGFALQDFSARTGLPPSCLAKGLEAAERRGLIERDMLRVRPTQRGFDFLND 406
Query: 949 LQQIFLNN 956
LQ +FL +
Sbjct: 407 LQALFLPD 414
>gi|386332961|ref|YP_006029130.1| coproporphyrinogen III oxidase [Ralstonia solanacearum Po82]
gi|334195409|gb|AEG68594.1| coproporphyrinogen III oxidase [Ralstonia solanacearum Po82]
Length = 425
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 222/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E ++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 72 GIPEDRFLAAVRQDLEAALPMVWGRRVHTIFIGGGTPSLLSAQGLDTLLSDIRMLLPVDA 131
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+IA
Sbjct: 132 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLRALGRIHSAAEARAAIDIA 191
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 192 RAHFDNINLDLMFALPGQTLAECEADVEAALSFETSHVSLYHLTLEPNTYFAKYPP-ALP 250
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 251 DDDTAFGMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 310
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL GF L
Sbjct: 311 FPHRVLREMRHRHPETYLRQAETAGGAAVVQEQREVDAADLPFEFMLNALRLTGGFPVTL 370
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I PT G+ FLNDLQ +FL +
Sbjct: 371 FQERTGLPLRAIERELDAAEQRGLLARDHVAICPTELGQRFLNDLQALFLAD 422
>gi|299066244|emb|CBJ37428.1| Coproporphyrinogen dehydrogenase [Ralstonia solanacearum CMR15]
Length = 424
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 223/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E ++L A+ D+E +LP++ R++HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 71 GIPEDRFLAAIRQDLEAALPMVWGRRVHTIFIGGGTPSLLSARGLDTLLSDIRMLLPVDA 130
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+IA
Sbjct: 131 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLQALGRIHSAAEARAAIDIA 190
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF K+PP ++P
Sbjct: 191 RAHFDNINLDLMFALPGQTLAECEADVEAALSFGTSHVSLYHLTLEPNTYFAKHPP-ALP 249
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY++ G +HNLNYW+FGDYLG
Sbjct: 250 DDDTAFAMQDWIHARLAAAGYEHYEVSAYARPGKRCKHNLNYWQFGDYLGIGPGAHGKLS 309
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLN LRL +GF L
Sbjct: 310 FPHRVIREMRHKHPETYLRQSETAGGATVVQEQREVDAADLPFEFMLNTLRLTEGFPVTL 369
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+PT G+ FLNDLQ +FL +
Sbjct: 370 FQERTGLPLRGIERELDAAERRGLLVRDHVAIRPTELGQRFLNDLQALFLAD 421
>gi|241663554|ref|YP_002981914.1| coproporphyrinogen III oxidase [Ralstonia pickettii 12D]
gi|240865581|gb|ACS63242.1| oxygen-independent coproporphyrinogen III oxidase [Ralstonia
pickettii 12D]
Length = 422
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 224/352 (63%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+++L A+ D+E +LP++ R +HTIFIGGGTPSL+S GLD LL +I+ LL
Sbjct: 69 GIPEERFLAAVRQDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDIRMLLPVDA 128
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE E+F SY G+NRLSIGIQSFN+ +L LGR H + +A+ AI+IA
Sbjct: 129 DAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAHLQALGRIHSAAEARAAIDIA 188
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ +F+N NLDL++ALP QTL+E D+ A+ + H+SLY LT+EPNTYF KYPP ++P
Sbjct: 189 RAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFAKYPP-ALP 247
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
+D MQD I + L Y++YE+SAY+K G +HNLNYW+FGDYLG
Sbjct: 248 DDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGPGAHGKLS 307
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
+ + ++++ L FEFMLNALRL DGF L
Sbjct: 308 FPHRVIREMRHKHPDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLTDGFPVTL 367
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ ++ IE +L AE+ GLL R++ I+ T G+ FLNDLQ++FL +
Sbjct: 368 FQERTGLPLRSIERQLDVAEQRGLLTRDHVAIRLTELGQRFLNDLQELFLAD 419
>gi|120611162|ref|YP_970840.1| tRNA-dihydrouridine synthase A [Acidovorax citrulli AAC00-1]
gi|120589626|gb|ABM33066.1| tRNA-U16,U17-dihydrouridine synthase [Acidovorax citrulli AAC00-1]
Length = 347
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 139/246 (56%), Positives = 185/246 (75%), Gaps = 2/246 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ +IS+APMM+ TDRHCR FHR ++R++ LYTEM TT A++ G+ + L FNAEEHP+A
Sbjct: 19 GRWRISVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGALVHGDVERHLRFNAEEHPVA 78
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAM
Sbjct: 79 LQLGGSEPGDLAHSARLGERWGYGEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAM 138
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
D+V + +TVKHRIGI Y FVRDFVGTV+ AGCR FIVHARNA+L+ L+PK+NR+I
Sbjct: 139 VDAVSVPVTVKHRIGIGRSEEYAFVRDFVGTVAEAGCRVFIVHARNAWLEGLSPKENREI 198
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFD 246
P L+Y+ V+ LK +FP+L I INGG+ T + L +DG M+GREAY NP+ ++ +D
Sbjct: 199 PPLRYDVVHRLKAEFPDLVIAINGGLATDAAVQEALGGGLDGAMIGREAYHNPWWLARWD 258
Query: 247 LNYYSN 252
Y+ +
Sbjct: 259 ALYFGD 264
>gi|330826507|ref|YP_004389810.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
denitrificans K601]
gi|329311879|gb|AEB86294.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
denitrificans K601]
Length = 410
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/348 (43%), Positives = 211/348 (60%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y AL+ D+E +LP++ R + TIFIGGGTPSL + +D LL +I+ L + +
Sbjct: 64 LPEARYTAALVADLEAALPLVWGRTVQTIFIGGGTPSLFAPQSIDRLLSDIRARLRLEAD 123
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
+TLEANP TFE E+F +Y G+ RLSIG+QSFN+++L LGR HD QA A+E A
Sbjct: 124 CEVTLEANPGTFEKERFRAYRDAGVTRLSIGVQSFNDRHLQALGRVHDRAQALAAVEEAA 183
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
Q F FNLD++YALP QT +E D+ A+ +PPH+S+Y LTIEPNTYF KYPP +P
Sbjct: 184 QAFETFNLDIMYALPGQTPAEQEQDMRQALALAPPHISIYHLTIEPNTYFAKYPP-RLPE 242
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D+ M D+IT L YE+SAY++ G++ HN NYW+FGDYL
Sbjct: 243 DDQAYAMLDRITELTAAAGLSRYEVSAYAREGHQCLHNRNYWQFGDYLGIGAGAHSKLSF 302
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +IA+ + + + L FEFMLNALRL++GF+ F ER
Sbjct: 303 AHRIVRQVRLRDPQLYMAGALSGRAIAQDEDVRRADLPFEFMLNALRLREGFALQDFTER 362
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG + I L+ AE GL+ R+ +++PT G FL+DLQ +FL +
Sbjct: 363 TGQPLTAIAQGLQQAEARGLIARDMGHVRPTERGFDFLSDLQALFLAD 410
>gi|348617681|ref|ZP_08884217.1| Oxygen-independent coproporphyrinogen III oxidase-like protein
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816917|emb|CCD28839.1| Oxygen-independent coproporphyrinogen III oxidase-like protein
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 400
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/348 (45%), Positives = 213/348 (61%), Gaps = 35/348 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
++ EK+YL+AL D+EL+LP I R+I ++FIGGGTPSL+S G+D LL I+ L
Sbjct: 54 DVPEKEYLDALRGDLELALPSIWGRRIQSVFIGGGTPSLLSAAGIDRLLSEIRARLPLNP 113
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ +TLEANP FE +F + G+NRLSIGIQSFN+ +L LGR HD++QA+ A+EIA
Sbjct: 114 EVEVTLEANPGAFEAARFKQFRASGVNRLSIGIQSFNDAHLKALGRVHDAQQARRAVEIA 173
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F++FNLDL++ALP Q E D+ A+ Y+P HLS+Y LT+E NTYF KYPP +P
Sbjct: 174 HNAFDHFNLDLMFALPCQIFDECRADVETALSYAPTHLSIYQLTLEANTYFSKYPP-RLP 232
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKIE 881
++ A MQD I + L+ Y +YE+SAY++ HNLNYW+FGDYLG K+
Sbjct: 233 DEEQCADMQDWIHARLREAGYSHYEVSAYAQPHQRCWHNLNYWQFGDYLGIGAGAHSKLS 292
Query: 882 ------------------KKC----------------LIFEFMLNALRLKDGFSPNLFFE 907
++C L FEFMLNALRL GF + F E
Sbjct: 293 FPQRIVRQMRYKQPAAYLRQCAENAPIQQEYAVNAEDLPFEFMLNALRLTQGFPVHWFSE 352
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955
RTG+ I+ IE L+ A GLL R+++ I PT G+ FL+DLQ +FL
Sbjct: 353 RTGLPIRAIEQPLRTAIARGLLTRDHQMIIPTPLGQRFLSDLQALFLE 400
>gi|351728741|ref|ZP_08946432.1| tRNA-dihydrouridine synthase A [Acidovorax radicis N35]
Length = 328
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 178/239 (74%), Gaps = 3/239 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEP 75
MM+ TDRHCR FHR +TR + LYTEM AI+ G ++H L FNAEEHP+A Q+G NEP
Sbjct: 1 MMDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIHGGTERH-LRFNAEEHPVALQLGGNEP 59
Query: 76 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI 135
+LA++A++ +WGY EINLNCGCPS+RVQ G FGA LM P LV+DC+KAM+D V++ +
Sbjct: 60 DRLAEAARLGAQWGYGEINLNCGCPSDRVQRGAFGASLMKSPQLVADCVKAMKDVVDVPV 119
Query: 136 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 195
TVKHRIGID + Y FVRDF+GTV+ AGC FIVHARNA+L+ L+PK+NR IP L+Y V
Sbjct: 120 TVKHRIGIDKVEDYGFVRDFIGTVADAGCTVFIVHARNAWLQGLSPKENRDIPPLRYEVV 179
Query: 196 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP 254
+ LK +FP+ I INGGI T + L ++DGVM+GREAY NP+ ++ +D YY P
Sbjct: 180 HQLKAEFPQFTIAINGGIATDAVVQEQLEHLDGVMIGREAYHNPWWLARWDQLYYGGAP 238
>gi|374371010|ref|ZP_09628998.1| tRNA-dihydrouridine synthase A [Cupriavidus basilensis OR16]
gi|373097456|gb|EHP38589.1| tRNA-dihydrouridine synthase A [Cupriavidus basilensis OR16]
Length = 312
Score = 315 bits (807), Expect = 7e-83, Method: Composition-based stats.
Identities = 142/238 (59%), Positives = 182/238 (76%), Gaps = 3/238 (1%)
Query: 28 MFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ 86
MFHRQ++R++WLYTEM TT A+L G+ L F+A E P+A Q+G +EP LA +AK+ +
Sbjct: 1 MFHRQLSRHTWLYTEMVTTGALLHGDVARHLAFDASEQPVALQLGGSEPADLAAAAKLGE 60
Query: 87 KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 146
+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIGID I
Sbjct: 61 QWGYVEVNLNCGCPSERVQRGAFGACLMAEPELVADCVKAMRDAVSIPVTVKHRIGIDTI 120
Query: 147 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE 206
YDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y LK++FP LE
Sbjct: 121 EHYDFVRDFVGTVAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQLKQEFPHLE 180
Query: 207 IIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDI 264
I+INGGI T E+D HL ++DGVM+GREAY P++++ D +Y Q +P+R D+
Sbjct: 181 ILINGGIVTHDEMDEHLAHVDGVMIGREAYHQPYVLAGMDGRFYG--AQTPVPSRRDV 236
>gi|407939138|ref|YP_006854779.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
gi|407896932|gb|AFU46141.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
Length = 328
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 141/239 (58%), Positives = 177/239 (74%), Gaps = 3/239 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEP 75
MM+ TDRHCR FHR +TR + LYTEM IL G ++H L FNAEEHP+A Q+G NEP
Sbjct: 1 MMDWTDRHCRYFHRLLTRQTLLYTEMVNAGGILYGGTERH-LRFNAEEHPVALQLGGNEP 59
Query: 76 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI 135
KLA++A++ ++WGYDEINLNCGCPS+RVQ G FGA LM P LV+D IKAM+D V + +
Sbjct: 60 DKLAQAARLGEEWGYDEINLNCGCPSDRVQRGAFGASLMKAPQLVADGIKAMKDVVSVPV 119
Query: 136 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 195
TVKHRIGID + Y FVRDFVGTV+ AGC FIVHARNA+L+ L+PK+NR IP L+Y V
Sbjct: 120 TVKHRIGIDKVEDYGFVRDFVGTVAEAGCTVFIVHARNAWLQGLSPKENRDIPPLRYEVV 179
Query: 196 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP 254
+ LK +FP+ I INGGI T + L ++DGVM+GREAY NP+ ++ +D YY P
Sbjct: 180 HRLKAEFPQFTIAINGGITTDDVVQEQLQHLDGVMIGREAYHNPWWLARWDQLYYGGAP 238
>gi|395006709|ref|ZP_10390513.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax sp. CF316]
gi|394315275|gb|EJE52086.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax sp. CF316]
Length = 426
Score = 315 bits (806), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 217/350 (62%), Gaps = 36/350 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ E++Y++AL+ D+E +LP+I R +H+IFIGGGTPSL S +D L+ I+ L +
Sbjct: 78 EVPEQRYIDALMADLEAALPLIWGRPVHSIFIGGGTPSLFSPAAIDRLVGGIRARLRLEA 137
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE ++F ++ GI RLSIG+QSFN+++L LGR HD QA A+ A
Sbjct: 138 DCEITMEANPGTFEKDRFKAFRAAGITRLSIGVQSFNDRHLKALGRVHDRAQALAAVREA 197
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F+ FNLD++YALP QT +EL D+ A+ +PPH+S+Y LTIEPNTYF KYPP ++P
Sbjct: 198 AEAFDTFNLDIMYALPGQTPAELEEDMATALSLNPPHISIYHLTIEPNTYFAKYPP-AIP 256
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+DE M D+IT + YEISAY++ G++ HN NYW+FGDYL
Sbjct: 257 EDDEAYAMLDRITEMTGQAGLSRYEISAYARAGHQCWHNTNYWQFGDYLGIGAGAHSKLS 316
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G+++A+ +++ + L FE+MLNALRL++GF+ F E
Sbjct: 317 FAHRVVRQVRFRDPGRYMDNALAGHAVAQDEEVRRADLPFEYMLNALRLREGFALKDFTE 376
Query: 908 RTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ I I L AE GL+ R ++PT G FL+DLQ++FL +
Sbjct: 377 RTGLPITAIAKALDKAEAKGLIVREPGGQVRPTERGFDFLSDLQELFLAD 426
>gi|301631758|ref|XP_002944962.1| PREDICTED: oxygen-independent coproporphyrinogen-III oxidase-like
protein HI_0463-like [Xenopus (Silurana) tropicalis]
Length = 398
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 224/368 (60%), Gaps = 39/368 (10%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + A++ G + E++Y++AL+ D+E +LP++ R +H+IFIGGGTPSL S
Sbjct: 36 KCPYCDFNSHAMQA----GTLPEQRYIDALVADLEAALPLVWGRTVHSIFIGGGTPSLFS 91
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
+D LL +++ L + + TLEANP TFE E+F ++ G+ RLSIG+QSF++ +L
Sbjct: 92 PDSIDRLLSDLRARLRIEADCETTLEANPGTFEKERFRAFRAAGVTRLSIGVQSFDDGHL 151
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR H+ QA A++ A Q F F LD++YALP Q++++L DL A+ ++PPHLS+Y
Sbjct: 152 QALGRVHNRAQALAAVQEAAQAFETFTLDIMYALPGQSMADLERDLETALAFAPPHLSVY 211
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LTIEPNT+F K+PP ++P DE M D+IT + YE+SAY++ G++ HN N
Sbjct: 212 HLTIEPNTWFAKHPP-ALPEGDEAYAMLDRITEMTGAAGLTRYEVSAYARKGHQCVHNGN 270
Query: 863 YWKFGDYL----------------------------------GNSIAKSKKIEKKCLIFE 888
YW+FGDYL G ++A+ + + + L FE
Sbjct: 271 YWQFGDYLGIGAGAHSKLSFAHRIVRQVRYREPRRYMDKALAGCAVAQDEDVRRADLPFE 330
Query: 889 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 948
+MLNALRL+ GF+ F ERTG+ + I L+ AE+ GL+ R+ +++PT G FL+D
Sbjct: 331 YMLNALRLRQGFALQHFCERTGLPVTAIARGLEQAERKGLIVRDMGHVRPTERGFDFLSD 390
Query: 949 LQQIFLNN 956
LQ +FL+
Sbjct: 391 LQTLFLDG 398
>gi|121611071|ref|YP_998878.1| putative oxygen-independent coproporphyrinogen III oxidase
[Verminephrobacter eiseniae EF01-2]
gi|121555711|gb|ABM59860.1| putative oxygen-independent coproporphyrinogen III oxidase
[Verminephrobacter eiseniae EF01-2]
Length = 416
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 209/348 (60%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E++YL AL+ D+E +LP++ R + ++FIGGGTPSL S +D L+ I+ L
Sbjct: 67 LPEQRYLAALMADLEAALPLVWGRMVRSVFIGGGTPSLFSPAAIDQLIGAIRARLPLVPA 126
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
ITLEANP +FE E+F ++ G+ RLS+G+QSF +++L LGR HD QA A++ A
Sbjct: 127 CEITLEANPGSFEKERFRAFRAAGVTRLSVGVQSFADRHLAALGRVHDRAQALAAVQEAA 186
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
Q F FNLD++YALP QTL EL DL A+ PPH+S+Y LTIEPNT F K+PP ++P
Sbjct: 187 QAFETFNLDIMYALPGQTLQELEQDLRQALALEPPHISVYQLTIEPNTRFAKFPP-ALPE 245
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D M D+IT L YEISAY++ G + HN NYW+FGDYL
Sbjct: 246 DDLAYAMLDRITQLTGQAGLARYEISAYARPGQQCAHNTNYWQFGDYLGIGAGAHSKLSF 305
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G ++A+ +++ + L FEFMLNALRL DGF+P F R
Sbjct: 306 AHRVVRQVRLREPGRYMEQALAGRALAQDEEVRRADLPFEFMLNALRLCDGFAPQDFMAR 365
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + I L +AE+ GL++R+ + I+ T G FLNDLQ +FL +
Sbjct: 366 TGLPLSAIAEGLASAERQGLIERSMERIRATPRGLDFLNDLQVLFLAD 413
>gi|171057394|ref|YP_001789743.1| oxygen-independent coproporphyrinogen III oxidase [Leptothrix
cholodnii SP-6]
gi|170774839|gb|ACB32978.1| oxygen-independent coproporphyrinogen III oxidase [Leptothrix
cholodnii SP-6]
Length = 457
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 220/351 (62%), Gaps = 35/351 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
++ G I E +YL+AL D+E +LP+I R+I +IFIGGGTPSL S G++ LL +++ LL
Sbjct: 107 QARGGIPEARYLDALRADLEAALPLIWGRQILSIFIGGGTPSLFSPEGINRLLSDVRALL 166
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ ITLEANP TFE E+F ++ G+NRLSIG+QSFN+ +L LGR HD QA A
Sbjct: 167 PLMPDCEITLEANPGTFERERFRAFRGAGVNRLSIGVQSFNDDHLRALGRVHDRGQALAA 226
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
E A F+ FNLDL+YALP Q+L++ DL A+ PPHLS+Y LTIEPNT F PP
Sbjct: 227 AEEAADAFDTFNLDLMYALPGQSLAQAGEDLRTALALQPPHLSVYHLTIEPNTLFAVRPP 286
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++ P +D + M D+I L + YE+SA++K G+ HNLNYW+FGDYL
Sbjct: 287 VT-PDDDAASEMLDQIVDLTGATGLERYEVSAFAKPGHRCAHNLNYWQFGDYLGIGAGAH 345
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
G +++ +++ +K L FEFMLNALRL++GF+
Sbjct: 346 SKLSFPHRVLRQVRWREPAAYMTQALAGQAVSNEEEVGRKALPFEFMLNALRLREGFALE 405
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
LF ERTG+ + IE+ L+ AE+ GL+ R+ ++P++ G FLNDLQ++FL
Sbjct: 406 LFRERTGLPLSSIEAALQQAEQRGLITRDFAQMRPSARGFDFLNDLQELFL 456
>gi|91788026|ref|YP_548978.1| tRNA-dihydrouridine synthase A [Polaromonas sp. JS666]
gi|91697251|gb|ABE44080.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas sp. JS666]
Length = 344
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 191/270 (70%), Gaps = 1/270 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
N ++ ++S+APMM+ TDRHCR FHR ++ ++ LYTEM TT A++ G+ L F EE
Sbjct: 18 NRAHSPWRLSVAPMMDWTDRHCRHFHRLLSGHALLYTEMVTTGALIHGDVARHLRFGVEE 77
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G +EP +LA+ A + ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC
Sbjct: 78 HPVALQLGGSEPAELAQCATLGEQWGYDEINLNCGCPSERVQRGSFGACLMAEPQLVADC 137
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAM D V + +TVKHRIGID SY FVRDFVG VS AGC TFIVHARNA+LK L+PK+
Sbjct: 138 VKAMVDVVSVPVTVKHRIGIDKGESYGFVRDFVGAVSEAGCSTFIVHARNAWLKGLSPKE 197
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR++P L+Y V+ LK +FP+L I INGGI T ++ L +DGVM+GREAY NP+ +S
Sbjct: 198 NREVPPLRYELVHRLKAEFPQLTIAINGGITTSTQVAEQLQQLDGVMIGREAYHNPWWLS 257
Query: 244 NFDLNYYSNLPQYKIPTRIDIINLDSENRE 273
+D +Y + ++ +D RE
Sbjct: 258 VWDAAFYGVADAGRTRESVEAQMVDYMARE 287
>gi|383758492|ref|YP_005437477.1| tRNA-dihydrouridine synthase A DusA [Rubrivivax gelatinosus IL144]
gi|381379161|dbj|BAL95978.1| tRNA-dihydrouridine synthase A DusA [Rubrivivax gelatinosus IL144]
Length = 342
Score = 313 bits (801), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM++ TDRHCR FHR +++++ LYTEM TT A+L G++ LDF EEHP+A Q+
Sbjct: 17 RLCVAPMLDWTDRHCRHFHRLLSKHARLYTEMVTTGALLHGDQPRHLDFGDEEHPVALQL 76
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+
Sbjct: 77 GGSEPSDLAACAKLAERWGYDEVNLNCGCPSPRVQRGAFGACLMNEPALVADAVKAMRDA 136
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVKHRIG+ SY FVRDFVGTV++AGC FIVHARNA+L+ L+PK+NR IP L
Sbjct: 137 VSLPVTVKHRIGLGKDESYAFVRDFVGTVAAAGCEVFIVHARNAWLEGLSPKENRDIPPL 196
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y + LK +FP L I++NGGI + I L ++DGVM+GR AY P+ ++ +D ++
Sbjct: 197 RYEVAHRLKAEFPALTIVVNGGIAGDEAIAAQLAHVDGVMVGRAAYHEPWTLATWDERFF 256
Query: 251 SN 252
Sbjct: 257 GE 258
>gi|89900421|ref|YP_522892.1| putative oxygen-independent coproporphyrinogen III oxidase
[Rhodoferax ferrireducens T118]
gi|89345158|gb|ABD69361.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Rhodoferax ferrireducens T118]
Length = 394
Score = 313 bits (801), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/348 (44%), Positives = 217/348 (62%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
+ E++YL AL+ D+E +LP+ R +H+IFIGGGTPSL S +D+LL I+ L +
Sbjct: 44 AELPEQRYLAALMADLEAALPLTWGRTVHSIFIGGGTPSLFSPEAIDHLLSGIRARLRLE 103
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
ITLEANP +FE ++F ++ G+ RLS+G+QSFN+ +L LGR HDS QA A+E
Sbjct: 104 AGCEITLEANPGSFEKDRFRAFRGAGVTRLSVGVQSFNDSFLKTLGRVHDSAQALAAVEE 163
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A Q F+ FNLDL+YALP QTL+++ D+ A+ +SPPH+S+Y LTIEPNT+F KYPP +
Sbjct: 164 AAQAFDTFNLDLMYALPGQTLADVKQDMARALTFSPPHISIYQLTIEPNTFFAKYPP-PL 222
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D M D IT + + + YE+SAY+ G+ HNLNYW+FGDYL
Sbjct: 223 PEDDTAYDMLDLITDMTGSAGLQRYEVSAYAAPGHRCFHNLNYWQFGDYLGLGAGAHSKL 282
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G+ +A+ +++ + L FEFMLNALRLKDGF+ LF
Sbjct: 283 SFAHRVVRQVRFREPGRYMEQALAGHCLAQDEEVSRADLPFEFMLNALRLKDGFALQLFS 342
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+ I I++ L+ A+ GL+ R+ + PT G FL+DLQ +FL
Sbjct: 343 ERTGLAITTIQAALEQAQAQGLIVRDLARVTPTVRGFDFLSDLQSLFL 390
>gi|160899058|ref|YP_001564640.1| tRNA-dihydrouridine synthase A [Delftia acidovorans SPH-1]
gi|160364642|gb|ABX36255.1| TIM-barrel protein, yjbN family [Delftia acidovorans SPH-1]
Length = 336
Score = 312 bits (800), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 143/242 (59%), Positives = 185/242 (76%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TD+HCR HR ++R++ LYTEM TT A+L G+ L F AEEHP+A Q+
Sbjct: 14 RMSVAPMMDWTDKHCRYLHRLLSRHTLLYTEMVTTGALLHGDVPRHLRFEAEEHPVALQL 73
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++ +WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D
Sbjct: 74 GGSEPSDLAQAARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEAPLVADCVKAMVDV 133
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +TVKHRIGID SY+FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L
Sbjct: 134 VDVPVTVKHRIGIDKDESYEFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V LK+DFPEL I INGGIK + L +DGVM+GREAY NP+ ++++D YY
Sbjct: 194 RYEIVARLKQDFPELTIAINGGIKADATVQDLLQQVDGVMVGREAYHNPWWLASWDALYY 253
Query: 251 SN 252
+
Sbjct: 254 GD 255
>gi|239817290|ref|YP_002946200.1| oxygen-independent coproporphyrinogen III oxidase [Variovorax
paradoxus S110]
gi|239803867|gb|ACS20934.1| oxygen-independent coproporphyrinogen III oxidase [Variovorax
paradoxus S110]
Length = 419
Score = 312 bits (800), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 211/349 (60%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E YL+AL+ D++ +LP+I R +HTIFIGGGTPSL S +D LL +++ L
Sbjct: 71 GIPESAYLDALIADLDAALPLIWGRTVHTIFIGGGTPSLFSPQAIDRLLGDVRARLKLAP 130
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
ITLEANP TFE +F +Y G+ RLS+G+QSFN+++L LGR HD QA A+E A
Sbjct: 131 ECEITLEANPGTFERNRFRAYRSAGVTRLSVGVQSFNDEHLKALGRVHDRAQAIAAVEEA 190
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F+ FNLDL+YALP QTL L DL A+ +PPH+S+Y LTIEPNT F K+PP ++P
Sbjct: 191 ASAFDTFNLDLMYALPGQTLEGLDADLTQALALAPPHISVYHLTIEPNTRFAKFPP-ALP 249
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D M D+IT + YE+SAY+++G+ HNLNYW+FGDYL
Sbjct: 250 EDDLAYAMLDRITERTAASGMSRYEVSAYARSGHACAHNLNYWQFGDYLGIGAGAHSKLS 309
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G ++A+S ++ L FEFMLNALRLK+GF+ F E
Sbjct: 310 FAHRIVRQVRFREPRLYMNNARAGAAVAQSDEVALADLPFEFMLNALRLKEGFTLPQFSE 369
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I+ L+ AE+ GL+ R+ + PT G FL+DLQ +FL +
Sbjct: 370 RTGLAMTSIQKGLEEAERKGLIARDLHRVWPTERGLDFLSDLQSLFLPD 418
>gi|329905074|ref|ZP_08274002.1| tRNA-dihydrouridine synthase A [Oxalobacteraceae bacterium
IMCC9480]
gi|327547746|gb|EGF32522.1| tRNA-dihydrouridine synthase A [Oxalobacteraceae bacterium
IMCC9480]
Length = 295
Score = 311 bits (798), Expect = 9e-82, Method: Composition-based stats.
Identities = 140/211 (66%), Positives = 172/211 (81%), Gaps = 1/211 (0%)
Query: 43 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 101
M TT A++ G+ LDFN EEHP+A Q+G ++P LA SA++ Q+WGYDEINLNCGCPS
Sbjct: 1 MVTTGALVHGDVARHLDFNDEEHPVALQLGGSDPADLAHSARLGQQWGYDEINLNCGCPS 60
Query: 102 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 161
RVQ G FGA LM +P LV+DC+KAMRD+V ID+TVKHRIGID SY F+RDFVGTV+
Sbjct: 61 ERVQKGAFGACLMAEPQLVADCVKAMRDAVSIDVTVKHRIGIDKNESYAFMRDFVGTVAE 120
Query: 162 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221
AGC TFIVHARNA LK L+PK+NR++P L+Y+ VY LK++FP+LEIIINGGIKT+ EIDL
Sbjct: 121 AGCTTFIVHARNAILKGLSPKENREVPPLRYDAVYQLKREFPDLEIIINGGIKTEAEIDL 180
Query: 222 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
HL ++DGVMLGREAY NP+LM+ FD YY +
Sbjct: 181 HLQHVDGVMLGREAYHNPYLMAGFDARYYDD 211
>gi|319795586|ref|YP_004157226.1| oxygen-independent coproporphyrinogen iii oxidase [Variovorax
paradoxus EPS]
gi|315598049|gb|ADU39115.1| oxygen-independent coproporphyrinogen III oxidase [Variovorax
paradoxus EPS]
Length = 420
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 212/349 (60%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E Y++AL+ D++ +LP+I R +HTIFIGGGTPSL S +D LL +++ L
Sbjct: 71 GIPEAAYIDALVADLDAALPLIWGRTVHTIFIGGGTPSLFSPQAIDRLLGDVRARLKLAP 130
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE +F +Y G+ RLS+G+QSFN+++L LGR HD QA A+E A
Sbjct: 131 DCEITLEANPGTFERNRFRAYRSAGVTRLSVGVQSFNDEHLTALGRVHDRAQAIAAVEEA 190
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F+ FNLDL+YALP QTL L DL+ A+ +PPH+S+Y LTIEPNT+F K+PP ++P
Sbjct: 191 ASAFDTFNLDLMYALPGQTLEHLEADLSQALALAPPHISVYHLTIEPNTWFAKFPP-TLP 249
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D M D+IT YE+SAY++ G++ HNLNYW+FGDYL
Sbjct: 250 EDDIAYAMLDRITERTGEQGMSRYEVSAYAREGHQCAHNLNYWQFGDYLGIGAGAHSKLS 309
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G ++++S ++ L FEFMLNALRLK GF+ F E
Sbjct: 310 FAHRIVRQVRYREPRLYMENARAGAAVSQSDEVSLADLPFEFMLNALRLKAGFTLPQFSE 369
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I+ L+ AE+ GL+ R+ + PT G FL+DLQ +FL +
Sbjct: 370 RTGLAMTSIQRGLEEAERKGLVARDLFRVWPTERGLDFLSDLQTLFLPD 418
>gi|410666192|ref|YP_006918563.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
gi|409028549|gb|AFV00834.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
Length = 325
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 188/247 (76%), Gaps = 1/247 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
+ R S+APMM +DRHCR F R +++ ++LYTEM TT A++ G+++ L++N EEHP+A
Sbjct: 4 SPRAFSLAPMMEWSDRHCRYFWRLLSKQAFLYTEMVTTGALIHGDRERFLNYNPEEHPVA 63
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G + P++LA A++ + WGYDE+NLNCGCPS+RVQNG GA LM +P LV+DCIKAM
Sbjct: 64 LQLGGSNPQELAACAQMAESWGYDEVNLNCGCPSDRVQNGMIGACLMAQPQLVADCIKAM 123
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+D+V+I +TVKHRIGIDD++ + DFV +++ GC TFIVHAR A+LK L+PK+NR+I
Sbjct: 124 QDAVQIPVTVKHRIGIDDMDDDQGLLDFVAPIAATGCVTFIVHARKAWLKGLSPKENREI 183
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y+ V+ LK++FP+LEIIINGG+KT + L ++DGVM+GREAY NP+L+S D
Sbjct: 184 PPLNYDRVHKLKQEFPDLEIIINGGLKTLADCQAQLAHVDGVMVGREAYHNPWLLSEVDA 243
Query: 248 NYYSNLP 254
Y P
Sbjct: 244 AIYGQPP 250
>gi|392954830|ref|ZP_10320381.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
gi|391857487|gb|EIT68018.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
Length = 345
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 135/256 (52%), Positives = 188/256 (73%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TD HCR FHR + ++ LYTEM TT A+L G+ + L F+A EHP+A Q+
Sbjct: 22 RLSVAPMMDWTDTHCRSFHRLLAPHALLYTEMVTTGALLHGDVERHLRFDASEHPLALQL 81
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA+ A + ++W YDE+NLNCGCPS+RVQ G FGA LM + V+DC++AMR +
Sbjct: 82 GGSEPDALARCAALAEQWQYDEVNLNCGCPSDRVQEGRFGACLMREADRVADCVRAMRSA 141
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVKHR+GIDD Y F+R FV TV++AGC TFIVHAR A+L+ L+P++NR+IP L
Sbjct: 142 TDLPVTVKHRVGIDDSEDYAFMRGFVETVAAAGCTTFIVHARKAWLQGLSPRENREIPPL 201
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK++FP+L ++INGGI+T + HL Y+DGVMLGREAY+NP+ ++ D +
Sbjct: 202 TYEHVYRLKQEFPQLTVLINGGIRTLDQCRQHLRYVDGVMLGREAYENPYALAGLDRELF 261
Query: 251 SNLPQYKIPTRIDIIN 266
IPTR +I+N
Sbjct: 262 ET--DGDIPTREEIMN 275
>gi|375110873|ref|ZP_09757088.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
gi|374569043|gb|EHR40211.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
Length = 331
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 139/264 (52%), Positives = 192/264 (72%), Gaps = 2/264 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+N+ +K S+APM++ TDRHCR FHR +++++ LYTEM TT AI+ K L FN +E
Sbjct: 1 MNNAILPQKFSVAPMLDWTDRHCRYFHRLMSKHAVLYTEMVTTGAIIHGKGDYLGFNPQE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+ Q+G +EP +LA AK+ ++ GY INLN GCPS+RVQNG FGA LM +P LV+D
Sbjct: 61 QPVVLQLGGSEPAELAHCAKLAEQRGYAAINLNVGCPSDRVQNGMFGACLMARPQLVADS 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAM+D+V I ++VK RIGIDD + Y F++DFV TV++AGCR F++HAR A+LK L+PK+
Sbjct: 121 VKAMQDAVSIPVSVKTRIGIDDSDEYQFLQDFVATVAAAGCRQFVIHARKAWLKGLSPKE 180
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L+I INGGIKT E + L Y+DGVM+GREAY NP+L+S
Sbjct: 181 NREIPPLNYPRVYQLKQDFPTLDISINGGIKTLAEAEQQLQYLDGVMIGREAYTNPYLLS 240
Query: 244 NFDLNYYSNLPQYKIPTRIDIINL 267
D Y ++ + +P + ++ L
Sbjct: 241 QVDAVLYQDV--WSVPGQHQLVRL 262
>gi|407937709|ref|YP_006853350.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax sp.
KKS102]
gi|407895503|gb|AFU44712.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax sp.
KKS102]
Length = 416
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 221/350 (63%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E++Y++AL+ D+E +LP++ R +H+IFIGGGTPSL S +D L+ +I+ L +
Sbjct: 68 GEVPEQRYIDALMADLEAALPLVWGRSVHSIFIGGGTPSLFSPAAIDRLIGDIRARLRLE 127
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP TFE ++F ++ G+ RLS+G+QSFN+++L LGR HD QA A+E
Sbjct: 128 PDCEITMEANPGTFEKDRFRAFRAAGVTRLSVGVQSFNDQHLKALGRVHDRAQAMAAVEE 187
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+ FNLD++YALP QTL EL DL A+ + PPH+S+Y LTIEPNTYF K+PP ++
Sbjct: 188 AAASFDTFNLDIMYALPGQTLPELEQDLQTALAFKPPHISIYHLTIEPNTYFAKFPP-AI 246
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D+ M D+IT + YEISAY++ G++ HN NYW+FGDYL
Sbjct: 247 PEDDQAYAMLDRITEMTGQTGMTRYEISAYAQPGHQCFHNTNYWQFGDYLGIGAGAHSKL 306
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G+++A+ ++ + L FE+MLNALRL++GF+ F
Sbjct: 307 SFAHRVVRQVRFRDPTRYMDNALAGHAVAQDDEVRRADLPFEYMLNALRLREGFALQDFM 366
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I L+ AE+ GL++R+ ++PT G FL+DLQ++FL +
Sbjct: 367 ARTGLPLTAIAKGLEAAERKGLIERDMARVRPTERGFDFLSDLQELFLAD 416
>gi|398811122|ref|ZP_10569928.1| putative oxygen-independent coproporphyrinogen III oxidase
[Variovorax sp. CF313]
gi|398081495|gb|EJL72272.1| putative oxygen-independent coproporphyrinogen III oxidase
[Variovorax sp. CF313]
Length = 420
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 214/349 (61%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+ Y+++L+ D++ +LP+I R +HTIFIGGGTPSL S +D LL +++ L
Sbjct: 71 GIPEQAYIDSLVADLDAALPLIWGRTVHTIFIGGGTPSLFSPQAIDRLLGDVRARLKLTP 130
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE +F +Y G+ RLS+G+QSFN+++L LGR HD QA A+E A
Sbjct: 131 DCEITLEANPGTFERNRFRAYRAAGVTRLSVGVQSFNDEHLKALGRVHDRAQAIAALEEA 190
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F+ FNLDL+YALP QTL L DL+ A+ +PPHLS+Y LTIEPNT+F K+PP ++P
Sbjct: 191 ASTFDTFNLDLMYALPGQTLEGLDADLSQALALAPPHLSVYHLTIEPNTWFAKFPP-TLP 249
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D M D+IT YE+SAY++ G++ HNLNYW+FGDYL
Sbjct: 250 EDDIAYAMLDRITERTTAAGMSRYEVSAYARDGHQCAHNLNYWQFGDYLGIGAGAHSKLS 309
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G ++++S ++ L FEFMLNALRLK+GF+ F E
Sbjct: 310 FAHRIVRQVRFREPRLYMENARAGAAVSQSDEVALADLPFEFMLNALRLKEGFTLPQFSE 369
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I+ L+ AE+ GL+ R+ + PT G FL+DLQ +FL +
Sbjct: 370 RTGLAMTSIQRGLEEAERKGLVARDLFRVWPTERGLDFLSDLQAMFLPD 418
>gi|302877639|ref|YP_003846203.1| oxygen-independent coproporphyrinogen III oxidase [Gallionella
capsiferriformans ES-2]
gi|302580428|gb|ADL54439.1| oxygen-independent coproporphyrinogen III oxidase [Gallionella
capsiferriformans ES-2]
Length = 394
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G EK+Y++AL+ D+E++LP I RK++T+F GGGTPSL+S + +L+ ++ LL
Sbjct: 44 GGFSEKEYVDALIRDLEMALPQIWGRKVYTVFFGGGTPSLLSGEAITEILRQVRMLLPLS 103
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP T E KF ++ G+NRLS+GIQSFN+ +L LGR H + +AK AI+I
Sbjct: 104 GDAEITLEANPGTVEAAKFAAFRDAGVNRLSMGIQSFNDTHLQALGRIHTADEAKAAIDI 163
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+ +F+N NLDL+YALP QTL + + D+ A+ + P HLS Y LT+EPNT F++ PP S+
Sbjct: 164 AQLHFDNINLDLMYALPKQTLDQALQDVQTALTFKPQHLSAYHLTLEPNTLFYRNPP-SL 222
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG-NSIAKSK- 878
P +D +A MQ I +LL N Y++YE SA+++ S+HNLNYWKFGDYLG + A SK
Sbjct: 223 PDDDASADMQQAIEALLAENGYQHYETSAFAQPNRRSRHNLNYWKFGDYLGIGAGAHSKL 282
Query: 879 --------------------------------KIEKKCLIFEFMLNALRLKDGFSPNLFF 906
++ + + FEFM+NALRL +GF LF
Sbjct: 283 SFPDKIVREARYKQPQAYMQQVALGAPVQTEHEVSRDEIPFEFMMNALRLNEGFDAALFC 342
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERT +++ I+ +L +AEK GLL R+ + I PT G+ FLNDL +IFL +
Sbjct: 343 ERTSLSLISIQRELLDAEKRGLLSRDIQRIAPTLQGQRFLNDLLEIFLAD 392
>gi|351730188|ref|ZP_08947879.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax radicis N35]
Length = 418
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 218/349 (62%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ E++Y++AL+ D+E +LP+I R +H+IFIGGGTPSL S +D LL +I+ L +
Sbjct: 71 GVPEQRYIDALMADLEAALPLIWGRTVHSIFIGGGTPSLFSPAAIDRLLGDIRARLRLEP 130
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE ++F ++ G+ RLS+G+QSFN+++L LGR HD QA A+E A
Sbjct: 131 DCEITLEANPGTFEKDRFRAFRSAGVTRLSVGVQSFNDQHLKALGRVHDRSQALAAVEEA 190
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F+ +NLD++YALP QT +L D+ A+ + PPH+S+Y LTIEPNTYF K+PP ++P
Sbjct: 191 AASFDTYNLDIMYALPGQTPQQLEQDMVTALAFKPPHISIYHLTIEPNTYFAKFPP-AIP 249
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D+ M D+IT+L YEISAY++ G++ HN NYW+FGDYL
Sbjct: 250 EDDQAYAMLDRITALTGQAGMARYEISAYAQPGHQCFHNTNYWQFGDYLGIGAGAHSKLS 309
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G ++A+ + + L FEFMLNALRL+DGF+ F
Sbjct: 310 FAHRVVRQVRFRDPGRYMDNALAGRAVAQDDDVRRADLPFEFMLNALRLRDGFALQDFMA 369
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I L+ AE+ GL++R+ ++PT G FLNDLQ++FL +
Sbjct: 370 RTGLPLTAIAKGLEAAERKGLIERDMARVRPTERGFDFLNDLQELFLAD 418
>gi|221066936|ref|ZP_03543041.1| TIM-barrel protein, yjbN family [Comamonas testosteroni KF-1]
gi|220711959|gb|EED67327.1| TIM-barrel protein, yjbN family [Comamonas testosteroni KF-1]
Length = 322
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/261 (55%), Positives = 190/261 (72%), Gaps = 4/261 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F AEEHP+A Q+G +EP
Sbjct: 1 MMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEAEEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SA++ +WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V + +T
Sbjct: 61 DLAHSARLGVQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADVVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID I SYDFVRDFVGTV+ AGC F+VHARNA+LK L+PK+NR+IP L+Y V
Sbjct: 121 VKHRIGIDKIESYDFVRDFVGTVADAGCHVFVVHARNAWLKGLSPKENREIPPLRYEVVA 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP L I +NGGIKT + L +DGVM+GREAY NP+ M+++D YY + +
Sbjct: 181 QLKRDFPGLTIAVNGGIKTDDVVQQQLQQVDGVMVGREAYHNPWWMASWDALYYQDESRE 240
Query: 257 KIPTRID---IINLDSENREN 274
+ I+ ++ ++ E RE+
Sbjct: 241 RTREGIEEQMVLYMEREAREH 261
>gi|350546169|ref|ZP_08915586.1| tRNA dihydrouridine synthase A [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526052|emb|CCD41462.1| tRNA dihydrouridine synthase A [Candidatus Burkholderia kirkii
UZHbot1]
Length = 328
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 140/234 (59%), Positives = 179/234 (76%), Gaps = 5/234 (2%)
Query: 33 ITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYD 91
++R++WLYTEM TT A+L G+ L F E P+A Q+G +EP LAKSAK+ ++WGYD
Sbjct: 1 MSRHAWLYTEMVTTGALLYGDVARHLAFTPAEAPVALQLGGSEPADLAKSAKLGEQWGYD 60
Query: 92 EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 151
EINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIG+D + Y+F
Sbjct: 61 EINLNCGCPSERVQCGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYEF 120
Query: 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211
VRDFVGTV+ AGC FIVHARNA LK L+PK+NR+IP LKY + Y LK+DFP LEI ING
Sbjct: 121 VRDFVGTVADAGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYRLKRDFPHLEISING 180
Query: 212 GIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYKIPTRIDI 264
GIKT E+D HL ++DGVMLGREAY +P++++ D + ++ P IP+R +I
Sbjct: 181 GIKTLDEVDEHLKHVDGVMLGREAYHHPYVLAGVDTRFCGADTP---IPSRDEI 231
>gi|386286577|ref|ZP_10063765.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
gi|385280374|gb|EIF44298.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
Length = 327
Score = 308 bits (790), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 198/264 (75%), Gaps = 3/264 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
++ K R+ +APM++ +DRHCR+F RQ++ ++ LYTEM TT A++ G+ K LD++
Sbjct: 1 MSKKILDRRFCVAPMLDWSDRHCRVFWRQLSHHAVLYTEMITTGALIHGDHKRHLDYSDI 60
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP+A Q+G ++P+ LA S ++ ++W YDE+NLNCGCPS+RVQNGFFGA LM +P LV+D
Sbjct: 61 EHPVALQLGGSDPEALAISVRMAEQWHYDEVNLNCGCPSDRVQNGFFGACLMARPTLVAD 120
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAM+D+ ++ ITVKHRIGID+ Y +++FVG ++ AG IVHAR A+L+ L+PK
Sbjct: 121 CVKAMKDAGDLPITVKHRIGIDEQEGYGPLQEFVGAIADAGTDAIIVHARKAWLQGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y+ VY LKKDFP+LEIIINGGI+T ++ L+Y+DG+M+GR AY+ P+L+
Sbjct: 181 ENREIPPLNYDLVYQLKKDFPDLEIIINGGIQTLEDARSQLSYVDGIMMGRSAYQTPYLL 240
Query: 243 SNFDLNYYSNLPQYKIPTRIDIIN 266
+ D ++Y K TR DII+
Sbjct: 241 AEVDEHFYQQAATGK--TRRDIIH 262
>gi|257092564|ref|YP_003166205.1| coproporphyrinogen III oxidase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045088|gb|ACV34276.1| oxygen-independent coproporphyrinogen III oxidase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 417
Score = 308 bits (790), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 162/370 (43%), Positives = 222/370 (60%), Gaps = 39/370 (10%)
Query: 623 KIPYKVIINEAIELVKSFGN----IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP 678
K PY + A+ + S G I E YL AL+ D+E +LP++ R++ ++FIGGGTP
Sbjct: 45 KCPYCDFNSHALPVGSSIGQRQTAIPESDYLAALIADLESALPLVWGRRVDSVFIGGGTP 104
Query: 679 SLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFN 738
SL+S G+D LL ++ L N ITLEANP T E KF ++ G+NRLS+GIQSFN
Sbjct: 105 SLLSGEGVDELLAAVRSRLPLLPNAEITLEANPGTVEAGKFAAFRAAGVNRLSLGIQSFN 164
Query: 739 NKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPH 798
+++L LGR HD + A+ AI IA +F+NFNLDL+Y LP QTL+E + D++ A+ +PPH
Sbjct: 165 SRHLTALGRIHDDRDARLAIGIAASHFDNFNLDLMYGLPGQTLAEALADVDAALACAPPH 224
Query: 799 LSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQ 858
LS Y LTIE NT F PP ++P D A MQD I + L Y++YEISA+++ G E +
Sbjct: 225 LSCYQLTIEANTAFAARPP-ALPDPDTCADMQDAIETKLAAAGYRHYEISAFARAGQECR 283
Query: 859 HNLNYWKFGDYLG----------------------------NSIAKSKKIEKKC------ 884
HNLNYW+FGDYLG +A ++++
Sbjct: 284 HNLNYWQFGDYLGIGAGAHGKLTLHDRVQRQMRWKRPEQYLAKVAAGTPVQQEFTVAPAE 343
Query: 885 LIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 944
L EFM+NALRL +GF+ LF RT + + IES+L+ AE+ GLL+R + I P+ GR
Sbjct: 344 LPCEFMMNALRLVEGFAAPLFEMRTALPLISIESQLRQAERDGLLQRQGQRIAPSERGRR 403
Query: 945 FLNDLQQIFL 954
FLN L Q FL
Sbjct: 404 FLNQLVQRFL 413
>gi|359799315|ref|ZP_09301877.1| coproporphyrinogen III oxidase [Achromobacter arsenitoxydans SY8]
gi|359362619|gb|EHK64354.1| coproporphyrinogen III oxidase [Achromobacter arsenitoxydans SY8]
Length = 406
Score = 308 bits (790), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 209/350 (59%), Gaps = 36/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E SLP I R++ T+FIGGGTPSL+S GLD LL ++ L
Sbjct: 57 GEIPERAYLDALRSDLEQSLPSIWGRQVTTVFIGGGTPSLLSSAGLDELLAVLRAYLNVW 116
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ R S+GIQSF++ L LGR HDS QA+ AIE+
Sbjct: 117 PDAEITMEANPGTAEAGRFRDYAASGVTRFSLGIQSFDDAQLKKLGRIHDSAQARAAIEM 176
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A++ NLD+++ALP QTL DL A+ + HLSLY LT+EPNT F K+PP +
Sbjct: 177 AQRAAPRVNLDMMFALPGQTLEACRTDLRQAVSFGTEHLSLYHLTMEPNTVFAKFPPEDL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + S L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDTSAAMQDLVESELAAAGLARYEVSAYARPGARCRHNLNYWEFGDYLGIGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+++ + L FEFMLNALRLKDG +
Sbjct: 297 SFHDRIVREARLRSPDSWMQAAMARDGSHLAESRQVGPEELPFEFMLNALRLKDGVAATS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ +I +L+ A K GLL + ++ T G FLNDLQ++FL
Sbjct: 357 FNERTGLSLAVIAHQLEAASKRGLLDADPTRLRATPLGWSFLNDLQEMFL 406
>gi|241766211|ref|ZP_04764111.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
gi|241363710|gb|EER59087.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
Length = 313
Score = 308 bits (789), Expect = 8e-81, Method: Composition-based stats.
Identities = 142/248 (57%), Positives = 187/248 (75%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR HR ++R++ LYTEM TT A++ G+ + L +NAEEHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRYLHRLLSRHTLLYTEMVTTGALIHGDVERHLRYNAEEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V+I +T
Sbjct: 61 DLAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVQIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGID SY FVRDF+GTV++AGC FIVHARNA+LK L+PK+NR++P L+Y V+
Sbjct: 121 VKHRIGIDKDESYGFVRDFIGTVAAAGCEVFIVHARNAWLKGLSPKENREVPPLRYAVVH 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP L I INGGI+T + L ++DGVM+GREAY NP+ ++ +D YY P+
Sbjct: 181 QLKRDFPHLTIAINGGIQTDDVVHEQLGHLDGVMVGREAYHNPWWLARWDALYYG-APES 239
Query: 257 KIPTRIDI 264
+ TR D+
Sbjct: 240 SL-TRDDV 246
>gi|386817163|ref|ZP_10104381.1| coproporphyrinogen III oxidase, anaerobic [Thiothrix nivea DSM
5205]
gi|386421739|gb|EIJ35574.1| coproporphyrinogen III oxidase, anaerobic [Thiothrix nivea DSM
5205]
Length = 382
Score = 308 bits (789), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 218/352 (61%), Gaps = 38/352 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ EK Y++ALL D+ LP I R++ +IFIGGGTPSL S +D LL I+ LL F+
Sbjct: 32 GLPEKAYIQALLTDLASELPHIWGRRLESIFIGGGTPSLFSAESIDALLNGIRALLPFRP 91
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
NI +T+EANP TFE +KF + GINRLS+GIQSFN ++L LGR H+ ++A A +IA
Sbjct: 92 NIEVTMEANPGTFEQDKFRGFREAGINRLSVGIQSFNQQHLQALGRVHNREEALRAADIA 151
Query: 762 KQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
+ FNNFNLDL++ LP QTL E M DL A++ P HLS Y LT+EPNT F+K PP S+
Sbjct: 152 RTAGFNNFNLDLMFGLPQQTLEEAMQDLQQAVELQPTHLSWYQLTLEPNTLFYKQPP-SL 210
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D A MQ +K++ Y YE+SAY++ G++ +HN NYW+FGDY+
Sbjct: 211 PDDDLTAEMQFSGQQFIKSSCYDQYEVSAYARPGFQCRHNRNYWEFGDYVAIGAGAHGKI 270
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G + + + + L FEFMLNALRL++GF+P+L
Sbjct: 271 THPVEASVIRYHKYRQPAEYMQQAIQGKARSGEQVLTPADLSFEFMLNALRLREGFAPSL 330
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG++++ +++ L A + GLL N + I+PT G FLN++ Q+FL +
Sbjct: 331 FTERTGLSVQHLQAGLDQAAQRGLLDFNGELIRPTETGWQFLNEVIQLFLED 382
>gi|293605629|ref|ZP_06688009.1| coproporphyrinogen III oxidase [Achromobacter piechaudii ATCC
43553]
gi|292816009|gb|EFF75110.1| coproporphyrinogen III oxidase [Achromobacter piechaudii ATCC
43553]
Length = 406
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 207/350 (59%), Gaps = 36/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E +LP I R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 57 GEIPERAYLDALRSDLEQALPSIWGRQVVSVFIGGGTPSLLSSAGLDELLAMLRACLNLW 116
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ R S+GIQSF++ L LGR HD+ QA+ AI++
Sbjct: 117 PDAEITMEANPGTAEASRFRDYAASGVTRFSLGIQSFDDAQLKKLGRIHDAAQARAAIDM 176
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+ + NLD+++ALP QTL + DL AI + HLSLY LT+EPNT F K+PP +
Sbjct: 177 AQHAVSRVNLDMMFALPGQTLEACVADLRQAISFGTEHLSLYHLTMEPNTVFAKFPPAEL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDTSAAMQDAVEAELAAAGLSRYEVSAYARAGARCRHNLNYWEFGDYLGIGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+++ L FEFMLNALRLKDG
Sbjct: 297 SFHDRIVREARLRSPDSWMQAAMARDGSHLAESRQVGPDELPFEFMLNALRLKDGVPATA 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A K GLL + +K T G FLNDLQ++FL
Sbjct: 357 FNERTGLSLAAIAHQLEAASKRGLLDADPTRLKATPLGWRFLNDLQEMFL 406
>gi|251793819|ref|YP_003008551.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|422337222|ref|ZP_16418194.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
gi|247535218|gb|ACS98464.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|353345774|gb|EHB90065.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
Length = 327
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 182/239 (76%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + +IAPM++ T RHCR FHRQ +R++ LYTEM T QAI+ K LDF+A EHP+A
Sbjct: 8 FYRGRFAIAPMLDWTTRHCRYFHRQFSRHTLLYTEMVTAQAIIHAKYDHLDFDAAEHPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM KP LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKPNLVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGIDD +SYDF+ +FV TV GCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QSAVQIPVTVKTRIGIDDFDSYDFLYNFVQTVKQVGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P+L Y VY LK+DFP+L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ + D
Sbjct: 188 PLLDYERVYQLKRDFPDLLISINGGIKTIEEIQQHLQHVDGVMVGREAYQNPSLLGHID 246
>gi|407790626|ref|ZP_11137719.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
gi|407203749|gb|EKE73734.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
Length = 323
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/241 (57%), Positives = 180/241 (74%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R S+APM++ TDRH R+F RQ++R++ LYTEM TT AI+ K L F+ EHP+A Q+
Sbjct: 4 RTFSVAPMLDWTDRHYRVFARQLSRHALLYTEMVTTGAIIHGKGDYLAFSEAEHPVALQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAM+D+
Sbjct: 64 GGSNPADLAHCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMAEPTLVADCVKAMKDA 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGIDD++SY F+ DFV T+S AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VSIPVTVKSRIGIDDMDSYPFLVDFVSTISEAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKDFP L I INGGIKT E+ HL ++D VM+GREAY+NP+L++ D Y
Sbjct: 184 DYPRVYQLKKDFPNLHIGINGGIKTLDEMQGHLAHVDSVMVGREAYQNPYLLAEVDAALY 243
Query: 251 S 251
Sbjct: 244 G 244
>gi|237748599|ref|ZP_04579079.1| coproporphyrinogen oxidase [Oxalobacter formigenes OXCC13]
gi|229379961|gb|EEO30052.1| coproporphyrinogen oxidase [Oxalobacter formigenes OXCC13]
Length = 401
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 165/349 (47%), Positives = 220/349 (63%), Gaps = 35/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
N+ E +YL+ L D+E SLP++ R + +IFIGGGTPSL+S G+D LL +I+ LL
Sbjct: 54 NLPEAEYLDVLRSDLEASLPLVWGRPVSSIFIGGGTPSLMSADGIDRLLSSIRALLPVLP 113
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ I++EANP TFE KF SY GINRLSIGIQSFN ++L+ LGR HDS +AK AI IA
Sbjct: 114 DAEISMEANPGTFESGKFKSYRESGINRLSIGIQSFNARHLHQLGRIHDSDEAKDAIAIA 173
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+YF+N NLDL+ ALP QTL EL D++ A+ + HLSLY LTIEPNTYF K PP+ +P
Sbjct: 174 MKYFDNVNLDLMIALPEQTLEELEQDISTALSFQTQHLSLYQLTIEPNTYFAKRPPV-LP 232
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG-NSIAKSK-- 878
+ D MQ+++ + +++YE+SAY+K G++ HN NYW FGDYLG + A SK
Sbjct: 233 NEDVIERMQNRVEEMTALAGFEHYEVSAYAKPGHQCWHNKNYWLFGDYLGIGAAAHSKLT 292
Query: 879 -------------------------KIEKKCLI------FEFMLNALRLKDGFSPNLFFE 907
++E++ + FEFMLNALR GF +LF E
Sbjct: 293 VNDEIIRQMRHRNPKLYMEGDEIKSRVEEQFTVQSSDVGFEFMLNALRFTGGFPASLFCE 352
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I L+ A K GLL ++ I+PT G+ FLNDLQQIFL +
Sbjct: 353 RTGLPLSFILEPLEKARKKGLLTMDSSFIRPTELGKRFLNDLQQIFLPD 401
>gi|82701203|ref|YP_410769.1| coproporphyrinogen III oxidase [Nitrosospira multiformis ATCC
25196]
gi|82409268|gb|ABB73377.1| coproporphyrinogen III oxidase, anaerobic [Nitrosospira multiformis
ATCC 25196]
Length = 408
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/358 (45%), Positives = 212/358 (59%), Gaps = 39/358 (10%)
Query: 635 ELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 694
E+ G + E +Y+ AL+ D+E SLP I RK+ +IF GGGTPSL S +D +L ++
Sbjct: 46 EVRDRSGGMPEAEYVAALIRDLEASLPQIWGRKVISIFFGGGTPSLFSPHSIDGILAAVR 105
Query: 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQA 754
LL + ITLEANP TFE ++F + GINRLSIGIQSFN ++L LGR HD K A
Sbjct: 106 ALLPLEHLAEITLEANPGTFEAQRFADFQAAGINRLSIGIQSFNARHLASLGRIHDGKDA 165
Query: 755 KYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 814
+ AIEIA++ F+N NLDL+Y LPNQTL E D+ AI + H+S Y L +EPNT F +
Sbjct: 166 RRAIEIAQKNFDNINLDLMYGLPNQTLEEAREDIETAIAHGVQHISAYHLALEPNTLFHR 225
Query: 815 YPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSI 874
YPP S+P ++ A MQ I L Y NYE SA+++ G ES+HN+NYW FGDYLG
Sbjct: 226 YPP-SLPDDELTADMQAMIEQTLAREGYANYETSAFARPGRESRHNMNYWLFGDYLGIGA 284
Query: 875 AKSKKIE--------------KKCLI------------------------FEFMLNALRL 896
KI K+ LI FEF++NALRL
Sbjct: 285 GAHSKISFRDRIVRQMRYRQPKEYLIKSVPEMASEPPVMEQHEVGRNDRAFEFVMNALRL 344
Query: 897 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
DGF+P +F ERTG+ + I+ +L AE+ L+ R+ + I PT GR FLNDL QIFL
Sbjct: 345 TDGFAPQMFIERTGLALTHIQRQLDEAERRQLITRDFQRIAPTFAGRRFLNDLLQIFL 402
>gi|221065459|ref|ZP_03541564.1| oxygen-independent coproporphyrinogen III oxidase [Comamonas
testosteroni KF-1]
gi|220710482|gb|EED65850.1| oxygen-independent coproporphyrinogen III oxidase [Comamonas
testosteroni KF-1]
Length = 409
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 216/346 (62%), Gaps = 35/346 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y++AL+ D+E +LP+I R +H++F+GGGTPSL S +D L+ ++ L + +
Sbjct: 65 LPEDRYIDALMADLESALPLIWGRTVHSVFMGGGTPSLFSPESIDKLIAGLRARLRMEPD 124
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
IT+EANP TFE ++F ++ G+NRLSIG+QSF+++YL +GR HD+ QA+ A+ A
Sbjct: 125 CEITMEANPGTFEKDRFKAFRAAGVNRLSIGVQSFDDRYLQAVGRVHDAAQAQAAVREAA 184
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
F FN+DL+YALP Q+L++L D++ A+ ++PPHLS+Y LTIEPNTYF KYPPL +P
Sbjct: 185 DNFETFNIDLMYALPGQSLADLQRDVDTALAFAPPHLSIYHLTIEPNTYFAKYPPL-VPE 243
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D M D IT+ + + YE+SAY+K G++ HN NYW+FGDYL
Sbjct: 244 DDTAYEMLDLITASTQGAGMQRYEVSAYAKEGHQCFHNSNYWQFGDYLGIGAGAHSKLSF 303
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +A+ ++++ L FE+MLNALRL+ GF+ F ER
Sbjct: 304 AHRIVRQVRFRDPARYMDMALAGTPLAQDNEVKRAELPFEYMLNALRLRGGFALQEFMER 363
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
TG+ + I L A+ GL+ R+ + PT G FL+DLQ++FL
Sbjct: 364 TGLPMSAIAKGLDQAQAKGLITRDLGRVVPTERGFDFLSDLQEMFL 409
>gi|311106530|ref|YP_003979383.1| oxygen-independent coproporphyrinogen III oxidase 2 [Achromobacter
xylosoxidans A8]
gi|310761219|gb|ADP16668.1| oxygen-independent coproporphyrinogen III oxidase 2 [Achromobacter
xylosoxidans A8]
Length = 406
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 209/350 (59%), Gaps = 36/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E +LP I R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 57 GEIPERAYLDALRSDLEQALPSIWGRQVVSVFIGGGTPSLLSSEGLDELLAMLRACLNLW 116
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ R S+GIQSF++ L LGR HDS QA+ AIE+
Sbjct: 117 PDAEITMEANPGTAEAGRFRDYAASGVTRFSLGIQSFDDAQLKKLGRIHDSAQARAAIEM 176
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A++ + NLD+++ALP QTL + DL A+ + HLSLY LT+EPNT F K+PP +
Sbjct: 177 AQRAVSRVNLDMMFALPGQTLEACVADLRQAVAFGTEHLSLYHLTMEPNTVFAKFPPEDL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + + L YE+SAY+K G +HNLNYW+FGDYL
Sbjct: 237 PDDDTSAAMQDAVEAELAAAGLARYEVSAYAKPGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ IA+S+++ L FEFMLNALRLKDG +
Sbjct: 297 SFHDRILREARLRSPDSWMQAAMARDGSHIAESRQVGPDELPFEFMLNALRLKDGVAATA 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A K GLL + ++ T G FLNDLQ++FL
Sbjct: 357 FNERTGLSLAAIAHQLEAASKRGLLDADPTRLRATPLGWRFLNDLQEMFL 406
>gi|124267888|ref|YP_001021892.1| anaerobic coproporphyrinogen III oxidase oxidoreductase
[Methylibium petroleiphilum PM1]
gi|124260663|gb|ABM95657.1| putative anaerobic coproporphyrinogen III oxidase oxidoreductase
protein [Methylibium petroleiphilum PM1]
Length = 417
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 207/344 (60%), Gaps = 34/344 (9%)
Query: 645 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704
E +YL+AL D+E +LP++ R++ ++FIGGGTPSL S + LL +++ L +
Sbjct: 73 ESRYLDALRADLEGALPLVWGRRVVSVFIGGGTPSLFSPDAIGQLLADVRARLPLEPGCE 132
Query: 705 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 764
ITLEANP TFE E+F ++ G+ RLSIG+QSF++ L LGR HD QA A+E A+
Sbjct: 133 ITLEANPGTFERERFRAFRAAGVTRLSIGVQSFDDAKLKALGRVHDRAQALAAVEEARSA 192
Query: 765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 824
F+ FNLDL+YALP Q+L++ D+ A+ + PPHLS+Y LT+EPNT F PP +P +D
Sbjct: 193 FDTFNLDLMYALPGQSLADCEADVRQALTFEPPHLSVYHLTLEPNTQFASRPPAGLPDDD 252
Query: 825 ENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL-------------- 870
M D+IT L YE+SAY++ G+ QHNLNYW+FGDYL
Sbjct: 253 TAFGMLDRITELTTAAGLGRYEVSAYARPGHRCQHNLNYWQFGDYLGIGAGAHSKLSFAH 312
Query: 871 --------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTG 910
G +++ ++ ++ L FEFMLNALRL++GF F ERTG
Sbjct: 313 RVLRQTRWREPAAYLRQAVEGAAVSNEHEVARQELPFEFMLNALRLREGFELARFAERTG 372
Query: 911 INIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+ + I+ L+ AE GL++R+ + + PT G FL+DLQ +FL
Sbjct: 373 LAVTAIQRGLEAAEAKGLIERDLQRVWPTERGFDFLSDLQSLFL 416
>gi|326317525|ref|YP_004235197.1| yjbN family TIM-barrel protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374361|gb|ADX46630.1| TIM-barrel protein, yjbN family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 320
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 136/237 (57%), Positives = 178/237 (75%), Gaps = 2/237 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR FHR ++R++ LYTEM TT A++ GN + L FNAEEHP+A Q+G +EP
Sbjct: 1 MMDWTDRHCRYFHRLLSRHALLYTEMVTTGALVHGNVERHLRFNAEEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V + +T
Sbjct: 61 DLAHSARLGERWGYGEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDAVSVPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGI Y FVRDFVGTV+ AGCR FIVHARNA+L+ L+PK+NR+IP L+Y+ V+
Sbjct: 121 VKHRIGIGRSEEYAFVRDFVGTVAEAGCRVFIVHARNAWLEGLSPKENREIPPLRYDVVH 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK +FP+L I INGG+ T + L +DG M+GREAY NP+ ++ +D Y+ +
Sbjct: 181 RLKAEFPDLVIAINGGLATDDAVQEALGGGLDGAMIGREAYHNPWWLARWDALYFGD 237
>gi|386815146|ref|ZP_10102364.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
gi|386419722|gb|EIJ33557.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
Length = 328
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 187/253 (73%), Gaps = 6/253 (2%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
MN +N RK ++APM++ TDRHCR FHR +T+ + LYTEM T AIL G++ L F
Sbjct: 1 MNKLN-----RKFTVAPMLDWTDRHCRYFHRLLTKQAVLYTEMVTVGAILHGDRDRHLRF 55
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G +EP ++A+ A+I + +GYDE+N+N GCPS RVQ G FGA LM +P L
Sbjct: 56 DVAEHPVALQLGGSEPAEMAECARIAEDYGYDEVNINVGCPSERVQKGAFGACLMAEPQL 115
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
+++C+ AM+ +V I +TVK+RIGID+ Y +R FV TVS AGC+TFIVHAR A+LK L
Sbjct: 116 IAECVAAMQAAVSIPVTVKNRIGIDEQEDYAGLRQFVSTVSEAGCQTFIVHARKAWLKGL 175
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR+IP L+Y VY LK++FP+LEIIINGGI T ++ HL ++DGVM+GREAY NP
Sbjct: 176 SPKENREIPPLRYELVYQLKQEFPDLEIIINGGITTLEQCQQHLRHVDGVMVGREAYHNP 235
Query: 240 FLMSNFDLNYYSN 252
+L++ DL Y
Sbjct: 236 WLLAQVDLVLYGT 248
>gi|256821809|ref|YP_003145772.1| yjbN family TIM-barrel protein [Kangiella koreensis DSM 16069]
gi|256795348|gb|ACV26004.1| TIM-barrel protein, yjbN family [Kangiella koreensis DSM 16069]
Length = 330
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 141/255 (55%), Positives = 190/255 (74%), Gaps = 3/255 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
RKI IAPM++ TDRH R F R IT+++ LYTEM TT AI+ G + L FN EEHP+A Q
Sbjct: 7 RKICIAPMLDWTDRHQRRFMRLITKHAVLYTEMITTGAIIHGGAERHLKFNQEEHPVAVQ 66
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++PK LA AKI + +GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM +
Sbjct: 67 LGGSDPKDLAHCAKICEDFGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECMSAMAN 126
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V++ +TVK RIGID+++SY+ + F+ TV SAG +TFI+HAR A+L L+PKQNR+IP
Sbjct: 127 VVDVPVTVKSRIGIDELDSYEHLHHFINTVQSAGVKTFIIHARKAWLSGLSPKQNREIPP 186
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ Y +KKDFPELEII+NGG+ T + + H+ + DGVM+GREAY NP+ ++ D +
Sbjct: 187 LRYDIAYQVKKDFPELEIIVNGGVNTLDQAEDHMKHADGVMIGREAYHNPYFLAEVDNRF 246
Query: 250 YSNLPQYKIPTRIDI 264
Y Y IP+RI+I
Sbjct: 247 YGK--DYDIPSRIEI 259
>gi|374620237|ref|ZP_09692771.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
gi|374303464|gb|EHQ57648.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
Length = 329
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 178/237 (75%), Gaps = 1/237 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR F R ++R++ +YTEM TT A++ G+ L FN EEHP+A Q+G + PK
Sbjct: 1 MDWTDRHCRYFWRLMSRHTRVYTEMVTTGALIHGDADRHLRFNEEEHPVALQLGGSSPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA SA++ +GYDEINLNCGCPS+RVQNG FGA LM + LV DC+ AM ++V+I +TV
Sbjct: 61 LAVSARMGADYGYDEINLNCGCPSDRVQNGAFGACLMREAELVRDCVSAMNEAVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHR+GIDD NSYD VRDFVGTV+ G + FI HARNA+LK L+PK+NR++P LKY +VY
Sbjct: 121 KHRLGIDDDNSYDIVRDFVGTVAEGGSQVFIAHARNAWLKGLSPKENREVPPLKYEWVYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP 254
LK+DFP+L I+INGGI T +E HL ++DGVMLGRE Y+NP+ +S D + P
Sbjct: 181 LKRDFPDLTIVINGGITTLEECQAHLAHVDGVMLGREPYQNPWFLSAVDELLFQETP 237
>gi|222111076|ref|YP_002553340.1| tRNA-dihydrouridine synthase a [Acidovorax ebreus TPSY]
gi|221730520|gb|ACM33340.1| TIM-barrel protein, yjbN family [Acidovorax ebreus TPSY]
Length = 351
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 186/258 (72%), Gaps = 3/258 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPI 66
++ ++S+APMM+ TDRHCR HR ++R++ LYTEM TT A+ G+ + L F+A EHP+
Sbjct: 7 HSPWRMSVAPMMDWTDRHCRYLHRLLSRHTLLYTEMVTTGALAHGDVQRHLRFDAAEHPV 66
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G +EP LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KA
Sbjct: 67 ALQLGGSEPADLAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKA 126
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
M D V++ +TVKHRIGID Y FVRDFVG V+ AGCR FIVHARNA+LK L+PK+NR+
Sbjct: 127 MVDVVQVPVTVKHRIGIDQNEDYGFVRDFVGVVADAGCRVFIVHARNAWLKGLSPKENRE 186
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L+Y+ LK DFP+L I INGG +T + L +DGVM+GREAY NP+ ++ +D
Sbjct: 187 IPPLRYDVAARLKADFPQLTIAINGGFQTDAAVLEELARVDGVMVGREAYHNPWWLARWD 246
Query: 247 LNYYSNLPQYKIPTRIDI 264
++ P PTR +
Sbjct: 247 EQFFGAAP--AAPTREQV 262
>gi|418528607|ref|ZP_13094555.1| putative oxygen-independent coproporphyrinogen III oxidase
[Comamonas testosteroni ATCC 11996]
gi|371454361|gb|EHN67365.1| putative oxygen-independent coproporphyrinogen III oxidase
[Comamonas testosteroni ATCC 11996]
Length = 409
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 215/346 (62%), Gaps = 35/346 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y++AL+ D+E +LP+I R +H++F+GGGTPSL S +D L+ ++ L + +
Sbjct: 65 LPEDRYIDALMADLESALPLIWGRTVHSVFMGGGTPSLFSPESIDKLIAGLRARLRMEPD 124
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
IT+EANP TFE ++F ++ G+NRLSIG+QSF+++YL +GR HD+ QA+ A+ A
Sbjct: 125 CEITMEANPGTFEKDRFKAFRAAGVNRLSIGVQSFDDRYLQAVGRVHDAAQAQAAVREAA 184
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
F FN+DL+YALP Q+L +L D++ A+ ++PPHLS+Y LTIEPNTYF KYPP+ +P
Sbjct: 185 DNFETFNIDLMYALPGQSLDDLQRDVDTALSFAPPHLSIYHLTIEPNTYFAKYPPV-VPE 243
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D M D IT+ + + YE+SAY+K G++ HN NYW+FGDYL
Sbjct: 244 DDTAYEMLDLITASTQGAGMQRYEVSAYAKDGHQCFHNSNYWQFGDYLGIGAGAHSKLSF 303
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +A+ ++++ L FE+MLNALRL+ GF+ F ER
Sbjct: 304 AHRIVRQVRFRDPARYMDMALAGTPLAQDNEVKRAELPFEYMLNALRLRGGFALQEFMER 363
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
TG+ + I L A+ GL+ R+ + PT G FL+DLQ++FL
Sbjct: 364 TGLPMSAISKGLDQAQAKGLISRDLGRVVPTERGFDFLSDLQEMFL 409
>gi|94986095|ref|YP_605459.1| tRNA-dihydrouridine synthase A [Deinococcus geothermalis DSM 11300]
gi|94556376|gb|ABF46290.1| tRNA-U16,U17-dihydrouridine synthase [Deinococcus geothermalis DSM
11300]
Length = 344
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 181/254 (71%), Gaps = 3/254 (1%)
Query: 14 SIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGD 72
S+APMM+ TDRHCR FHR +TR + LYTEM TT AIL G++ L F+ EHP+A Q+G
Sbjct: 12 SVAPMMDWTDRHCRAFHRTLTRRTLLYTEMVTTGAILHGDRARHLGFSPAEHPVALQLGG 71
Query: 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 132
++P LA+ A+I Q WGYDE+NLNCGCPS+RVQNG FGA LM P +V+ ++AMR +
Sbjct: 72 SDPAALAECARIAQDWGYDEVNLNCGCPSDRVQNGSFGACLMATPDVVARAVEAMRGATT 131
Query: 133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 192
+ +TVKHRIGIDD++SY+ + FV TV+ AGC+TFIVHAR A+L L+PK+NR+IP L+Y
Sbjct: 132 LPVTVKHRIGIDDLDSYEHLTRFVRTVAEAGCQTFIVHARKAWLSGLSPKENREIPPLRY 191
Query: 193 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
V LK DFP L +++NGG+ T HL + DGVM+GR AY++P+L++ D + +
Sbjct: 192 EVVRQLKADFPHLTVVLNGGVLTLAAAQEHLAWADGVMVGRAAYQDPYLLAAADRDLFGE 251
Query: 253 LPQYKIPTRIDIIN 266
PTR + I
Sbjct: 252 --DVTPPTRREAIE 263
>gi|407774714|ref|ZP_11122011.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
gi|407282196|gb|EKF07755.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
Length = 331
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 187/244 (76%), Gaps = 3/244 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAF 68
R+IS+APMM+ TDRH R F RQI+R++ LYTEM TT AIL G ++H L +N EHP+A
Sbjct: 5 RRISVAPMMDWTDRHDRYFLRQISRHTLLYTEMVTTGAILHGGVERH-LRYNDAEHPVAL 63
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P LA++ +I + YDEINLNCGCPS+RVQNG FGA LM P +V++C+K+M
Sbjct: 64 QLGGSDPDNLARACEIANDYAYDEINLNCGCPSDRVQNGAFGACLMATPDVVANCVKSMI 123
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+ + +TVK+RIGIDD Y ++ F TV+ AGC+TFIVHAR A+LK L+PK+NR++P
Sbjct: 124 SASDAPVTVKNRIGIDDQEDYPSLKRFTETVAEAGCKTFIVHARKAWLKGLSPKENREVP 183
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY VY LK++FPELEI+INGGIKT E D HL ++DGVM+GREAY+NP+++++ D
Sbjct: 184 PLKYELVYQLKQEFPELEILINGGIKTLDETDAHLKHVDGVMIGREAYQNPYVLADVDRR 243
Query: 249 YYSN 252
+Y +
Sbjct: 244 FYGD 247
>gi|421494448|ref|ZP_15941796.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455737888|ref|YP_007504154.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
gi|400191310|gb|EJO24458.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455419451|gb|AGG29781.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
Length = 348
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 178/239 (74%), Gaps = 1/239 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR FHR+++R++ LYTEM TT AIL K L +N EHP+A
Sbjct: 24 NLNRFSVAPMLDWTDRHCRYFHRKLSRHALLYTEMVTTGAILFGKGDYLAYNEAEHPVAL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P LA+ AKI Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+ AMR
Sbjct: 84 QLGGSDPAALAQCAKIAQERGYDEINLNVGCPSDRVQNGMFGACLMGNASLVADCVAAMR 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKI 187
D +I +TVK RIGIDD +SY+F+ DFVGTV+ GC F++HAR A+L L+PK+NR+I
Sbjct: 144 DVTDIPVTVKTRIGIDDQDSYEFLCDFVGTVAERGGCEMFVIHARKAWLSGLSPKENREI 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LKKDFP L + +NGGIKT +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 204 PPLDYPRVYQLKKDFPHLTMALNGGIKTLEEAKTHLQYMDGVMVGREAYQNPSILAQVD 262
>gi|332525913|ref|ZP_08402054.1| tRNA-dihydrouridine synthase A [Rubrivivax benzoatilyticus JA2]
gi|332109464|gb|EGJ10387.1| tRNA-dihydrouridine synthase A [Rubrivivax benzoatilyticus JA2]
Length = 320
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR +T+++ LYTEM TT A+L G++ LDF EEHP+A Q+G +EP
Sbjct: 1 MLDWTDRHCRHFHRLLTQHARLYTEMVTTGALLHGDQPRHLDFGDEEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V + +T
Sbjct: 61 DLAACAKLAERWGYDEVNLNCGCPSPRVQRGAFGACLMNEPALVADAVKAMRDAVSLPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+ SY FVRDFVG+V+ AGC FIVHARNA+L+ L+PK+NR IP L+Y +
Sbjct: 121 VKHRIGLGKDESYAFVRDFVGSVAEAGCEVFIVHARNAWLEGLSPKENRDIPPLRYEVAH 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK +FP+L I++NGGI + I L ++DGVM+GR AY P+ +S +D ++
Sbjct: 181 RLKTEFPQLTIVVNGGIAGDEAIAAQLAHVDGVMVGRAAYHEPWTLSTWDERFFGE 236
>gi|264679918|ref|YP_003279827.1| oxygen-independent coproporphyrinogen [Comamonas testosteroni
CNB-2]
gi|262210433|gb|ACY34531.1| putative oxygen-independent coproporphyrinogen [Comamonas
testosteroni CNB-2]
Length = 409
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 215/346 (62%), Gaps = 35/346 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y++AL+ D+E +LP+I R +H++F+GGGTPSL S +D L+ ++ L + +
Sbjct: 65 LPEDRYIDALMADLESALPLIWGRTVHSVFMGGGTPSLFSPESMDKLIAGLRARLRMEPD 124
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
IT+EANP TFE ++F ++ G+NRLSIG+QSF+++YL +GR HD+ QA+ A+ A
Sbjct: 125 CEITMEANPGTFEKDRFKAFRAAGVNRLSIGVQSFDDRYLQAVGRVHDAAQAQAAVREAA 184
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
F FN+DL+YALP Q++ +L D++ A+ ++PPHLS+Y LTIEPNTYF KYPP+ +P
Sbjct: 185 DNFETFNIDLMYALPGQSMVDLQRDVDTALSFAPPHLSIYHLTIEPNTYFAKYPPV-VPE 243
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D M D IT+ + + YE+SAY+K G++ HN NYW+FGDYL
Sbjct: 244 DDTAYEMLDLITASTRAAGMQRYEVSAYAKDGHQCFHNSNYWQFGDYLGIGAGAHSKLSF 303
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +A+ ++++ L FE+MLNALRL+ GF+ F ER
Sbjct: 304 AHRIVRQVRFRDPARYMDMALAGTPLAQDNEVKRADLPFEYMLNALRLRGGFALQEFMER 363
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
TG+ + I L A+ GL+ R+ + PT G FL+DLQ++FL
Sbjct: 364 TGLPMSAIAKGLDQAQAKGLISRDLGRVVPTERGFDFLSDLQEMFL 409
>gi|410638177|ref|ZP_11348741.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
gi|410142097|dbj|GAC15946.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
Length = 345
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 135/256 (52%), Positives = 191/256 (74%), Gaps = 2/256 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R IS+APM++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN +EHP+A Q+
Sbjct: 10 RTISVAPMLDWTDKHCRYFLRQISQHALLYTEMVTTGAIIFGKGDYLAFNHQEHPVALQL 69
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+ CIK+M+
Sbjct: 70 GGSDPTDMARCAVLAQQRGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAQCIKSMQAE 129
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++I +TVK RIGID+++ Y+ + F+ TV+ AGC TFIVHAR A+LK L+PK+NR IP L
Sbjct: 130 IDIPVTVKSRIGIDEMDEYEDLTRFITTVADAGCDTFIVHARKAWLKGLSPKENRDIPPL 189
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY+LK+ FP+L I INGG+KT ++ LHL YIDGVM+GRE Y NP+++++ D +Y
Sbjct: 190 MYERVYHLKEQFPDLHISINGGVKTLDDVALHLKYIDGVMIGREVYSNPYILADVDKRFY 249
Query: 251 SNLPQYKIPTRIDIIN 266
+ +K+PTR D++
Sbjct: 250 GD--NHKVPTRHDVVE 263
>gi|303256981|ref|ZP_07342995.1| tRNA-dihydrouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|330999169|ref|ZP_08322888.1| tRNA dihydrouridine synthase A [Parasutterella excrementihominis
YIT 11859]
gi|302860472|gb|EFL83549.1| tRNA-dihydrouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|329575369|gb|EGG56913.1| tRNA dihydrouridine synthase A [Parasutterella excrementihominis
YIT 11859]
Length = 343
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/260 (53%), Positives = 189/260 (72%), Gaps = 3/260 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ +APM++LTDRHCR FHR ++ + LYTEM TT A++ G+ H LDF+ EH +A Q+
Sbjct: 12 RFCVAPMLDLTDRHCRYFHRLLSHRARLYTEMVTTGALVHGDVPHHLDFSEAEHRVALQL 71
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA AK+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 72 GGSDPKDLAHGAKLAQQWGYDEVNLNCGCPSERVQKGSFGACLMAEPGLVADCVKAMQDA 131
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +T+KHR+GID N Y FVRDFVGT+ +AG R FIVHARNA+LK L+PK+NR+IP L
Sbjct: 132 THLPVTIKHRVGIDANNDYGFVRDFVGTLFNAGVRVFIVHARNAWLKGLSPKENREIPPL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+ VY LKKDFPE I+ING ++ E + L ++DGVMLGR AY P+L+++ D Y
Sbjct: 192 RREVVYQLKKDFPEAIIVINGALQDLGECEAELKHVDGVMLGRAAYYTPWLLTDVDARLY 251
Query: 251 SNLPQYKIPTRIDIINLDSE 270
++ ++ TR +I+ E
Sbjct: 252 ND--EHAPVTRDRVIDAMEE 269
>gi|121594416|ref|YP_986312.1| tRNA-dihydrouridine synthase A [Acidovorax sp. JS42]
gi|120606496|gb|ABM42236.1| tRNA-U16,U17-dihydrouridine synthase [Acidovorax sp. JS42]
Length = 351
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 182/248 (73%), Gaps = 1/248 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPI 66
++ ++S+APMM+ TDRHCR HR ++R++ LYTEM TT A+ G+ + L F+A EHP+
Sbjct: 7 HSPWRMSVAPMMDWTDRHCRYLHRLLSRHTLLYTEMVTTGALAHGDVQRHLRFDAAEHPV 66
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G +EP LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KA
Sbjct: 67 ALQLGGSEPTDLAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKA 126
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
M D V++ +TVKHRIGID Y FVRDFVG V+ AGCR FIVHARNA+LK L+PK+NR+
Sbjct: 127 MVDVVQVPVTVKHRIGIDQNEDYGFVRDFVGVVADAGCRVFIVHARNAWLKGLSPKENRE 186
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L+Y+ LK DFP+L I INGG +T + L +DGVM+GREAY NP+ ++ +D
Sbjct: 187 IPPLRYDVAARLKADFPQLTIAINGGFQTDAAVLQELARVDGVMVGREAYHNPWWLARWD 246
Query: 247 LNYYSNLP 254
++ P
Sbjct: 247 EQFFGAAP 254
>gi|422322084|ref|ZP_16403127.1| porphyrin oxidoreductase [Achromobacter xylosoxidans C54]
gi|317403014|gb|EFV83552.1| porphyrin oxidoreductase [Achromobacter xylosoxidans C54]
Length = 407
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 209/350 (59%), Gaps = 36/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E +LP I R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALRSDLEQALPSIWGRQVVSVFIGGGTPSLLSAAGLDELLAMLRACLNVW 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ R S+GIQSF++ L LGR HDS QA+ AIE+
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRFSLGIQSFDDAQLKKLGRIHDSAQARAAIEM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A++ NLD+++ALP QTL+ + DL AI + HLSLY LT+EPNT F K+PP +
Sbjct: 178 AQRAAPRVNLDMMFALPGQTLAACVDDLRQAIGFGTEHLSLYHLTMEPNTVFAKFPPEDL 237
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 238 PDDDTSAAMQDAVEAELAAAGLARYEVSAYARPGARCRHNLNYWEFGDYLGLGPGAHGKL 297
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+++ L FEFMLNALRLKDG + L
Sbjct: 298 SFHDRIVREARLRSPESWLRAAAARDGSHLAESRQVGPDELPFEFMLNALRLKDGVAATL 357
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A GLL + ++ T G FLNDLQ++FL
Sbjct: 358 FNERTGLSLAAIAHQLEAASAKGLLDADPTRLRATPLGWRFLNDLQEMFL 407
>gi|34496382|ref|NP_900597.1| coproporphyrinogen III oxidase [Chromobacterium violaceum ATCC
12472]
gi|34102235|gb|AAQ58601.1| probable porphyrin oxidoreductase [Chromobacterium violaceum ATCC
12472]
Length = 396
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 207/347 (59%), Gaps = 34/347 (9%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
DE Y++ALL D+E SLP + R + +IF+GGGTPSL S +D LL ++ +
Sbjct: 45 GFDEMAYVDALLRDLEYSLPEVWGRPLTSIFMGGGTPSLFSPQAMDALLAGVRARMKLHP 104
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFEIE+F Y GINRLSIGIQSFN K+L LGR HD +AK A+EIA
Sbjct: 105 DAEITMEANPGTFEIERFRGYREAGINRLSIGIQSFNPKHLKALGRIHDGDEAKRAVEIA 164
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+F+N NLDL+YALP QTL E + DLN A+ Y HLS Y LTIEPNT F P ++P
Sbjct: 165 LTHFDNVNLDLMYALPGQTLDEALSDLNTALSYGITHLSAYHLTIEPNTLFAAQTPQNLP 224
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
++ +A MQ+ I S L+ + +YE SA++K G S+HNLNYW+FGDY+
Sbjct: 225 DDEVSADMQEAIESCLEAAGFDHYETSAFAKPGRHSRHNLNYWQFGDYVGIGAGAHGKIS 284
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G + S+K+ + L FEFM+N LRL GF LF E
Sbjct: 285 SHAGIVRQMRHKQPAAYLKAVAAGAPLQSSQKVARADLPFEFMMNLLRLTSGFESRLFQE 344
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RTG+ + +I +L A+ GLL + ++PT G+ FLNDL +FL
Sbjct: 345 RTGLPLALIRRQLDAAQAQGLLDTDGAILRPTLKGQRFLNDLLTLFL 391
>gi|149907717|ref|ZP_01896464.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
gi|149809387|gb|EDM69316.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
Length = 330
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/244 (56%), Positives = 183/244 (75%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE 62
+ S + + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ + L +N E
Sbjct: 5 VTTSVHAPGRFSIAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIHGRGDYLAYNKE 64
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP++ Q+G + P LA+SAK+ Q+ GYDEINLN GCPS+RVQ+G FGA LM +P LV+D
Sbjct: 65 EHPVSLQLGGSNPIDLAQSAKLAQERGYDEINLNVGCPSDRVQSGKFGACLMAEPTLVAD 124
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAM+D V+I ITVK RIGIDD +SY+F++ F+ TV++ GC+ F +HAR A+L L+PK
Sbjct: 125 CVKAMQDVVDIPITVKTRIGIDDQDSYEFLQTFIDTVAATGCKDFTLHARKAWLSGLSPK 184
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY++K+DFP L I INGG+KT E LHL +DGVM+GREAY NPFL+
Sbjct: 185 ENREIPELNYQRVYDIKQDFPALFIAINGGVKTLAETQLHLGNVDGVMMGREAYHNPFLL 244
Query: 243 SNFD 246
S D
Sbjct: 245 SQID 248
>gi|299529925|ref|ZP_07043353.1| putative oxygen-independent coproporphyrinogen III oxidase
[Comamonas testosteroni S44]
gi|298722097|gb|EFI63026.1| putative oxygen-independent coproporphyrinogen III oxidase
[Comamonas testosteroni S44]
Length = 409
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 215/346 (62%), Gaps = 35/346 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y++AL+ D+E +LP+I R +H++F+GGGTPSL S +D L+ ++ L + +
Sbjct: 65 LPEDRYIDALMADLESALPLIWGRTVHSVFMGGGTPSLFSPESIDKLIAGLRARLRMEPD 124
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
IT+EANP TFE ++F ++ G+NRLSIG+QSF+++YL +GR HD+ QA+ A+ A
Sbjct: 125 CEITMEANPGTFEKDRFKAFRAAGVNRLSIGVQSFDDRYLQAVGRVHDAAQAQAAVREAA 184
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
F FN+DL+YALP Q++ +L D++ A+ ++PPHLS+Y LTIEPNTYF KYPP+ +P
Sbjct: 185 DNFETFNIDLMYALPGQSMVDLQRDVDTALSFAPPHLSIYHLTIEPNTYFAKYPPV-VPE 243
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D M D IT+ + + YE+SAY+K G++ HN NYW+FGDYL
Sbjct: 244 DDTAYEMLDLITASTRAAGMQRYEVSAYAKDGHQCFHNSNYWQFGDYLGIGAGAHSKLSF 303
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +A+ ++++ L FE+MLNALRL+ GF+ F ER
Sbjct: 304 AHRIVRQVRFRDPARYIDMALAGTPLAQDNEVKRADLPFEYMLNALRLRGGFALQEFMER 363
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
TG+ + I L A+ GL+ R+ + PT G FL+DLQ++FL
Sbjct: 364 TGLPMSAIAKGLDQAQAKGLISRDLGRVVPTERGFDFLSDLQEMFL 409
>gi|313199821|ref|YP_004038479.1| oxygen-independent coproporphyrinogen iii oxidase [Methylovorus sp.
MP688]
gi|312439137|gb|ADQ83243.1| oxygen-independent coproporphyrinogen III oxidase [Methylovorus sp.
MP688]
Length = 405
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/348 (43%), Positives = 212/348 (60%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
I E Y++AL+ D+E + P++ RK+ +IF GGGTPSL S +D +L +++ L +
Sbjct: 59 IPESTYVDALIADLEQATPLVWGRKVRSIFFGGGTPSLFSAESIDRILSHVRMLTPLEYE 118
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
ITLEANP TFE E+F Y G+NR+SIGIQSFN ++L LGR H+S++A+YA E A
Sbjct: 119 AEITLEANPGTFEAERFAGYRDAGVNRISIGIQSFNPRHLQALGRIHNSEEAQYAAEHAI 178
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
+ F N NLDL+YALP QTL E + D+ AI P H+S Y LT+EPNT F+ PP ++P
Sbjct: 179 KIFGNVNLDLMYALPEQTLEEALQDMRTAIALGPTHISAYHLTLEPNTPFYYKPP-ALPD 237
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG----------- 871
+D +A MQ+ I LL + Y +YE SA+ K G +HNLNYW FGDYLG
Sbjct: 238 DDTSATMQEAIEHLLAEHGYSHYETSAFGKAGKRCRHNLNYWVFGDYLGIGAGAHSKLSF 297
Query: 872 -----------------NSIAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFFER 908
++A++ IE++ L+ FEFM+NALRL +GF P LF
Sbjct: 298 HDRILRQSRIKQPNAYMKAVAETGHIEEERLLDRSDLGFEFMMNALRLTEGFDPMLFTTM 357
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG + +E L+ AE+ GL+ R + I PT+ G+ FLN+L Q+FL
Sbjct: 358 TGQALSTVEPALQQAEQRGLITRTPELIAPTALGQRFLNELLQLFLEE 405
>gi|398796281|ref|ZP_10555894.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
gi|398203746|gb|EJM90563.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
Length = 332
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/250 (55%), Positives = 184/250 (73%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHRQ++ + LYTEM TT AI+ K L ++ EE
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRQLSGDTLLYTEMVTTGAIIHGKGDYLAYSEEE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 61 HPLALQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGDAALVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGID+ +SY+F+ DF+GTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVSIPVTVKTRIGIDEQDSYEFLCDFIGTVAQQGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGGIKT +E LHL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPALTMAINGGIKTLEEAKLHLQHMDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRELFGR 250
>gi|347822203|ref|ZP_08875637.1| tRNA-dihydrouridine synthase A [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 319
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 130/244 (53%), Positives = 178/244 (72%), Gaps = 3/244 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQV 70
+S+APMM+ TDRHCR FHR +TR + LYTEM A++ G ++H L F+AEEHP+A Q+
Sbjct: 1 MSVAPMMDWTDRHCRYFHRLLTRRTRLYTEMLHAGAVIHGGTERH-LRFHAEEHPVALQL 59
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA++A++ +WGYDEINLNCGCPS RVQ G FGA LM P V+DCI+AM+D
Sbjct: 60 GGSDPADLARAARLGAQWGYDEINLNCGCPSERVQRGAFGASLMKAPQRVADCIRAMQDQ 119
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +TVKHRIG+D Y FVRDFVGT++ AGC FIVHARNA+L+ L+PK+NR +P L
Sbjct: 120 VDVPVTVKHRIGVDRQEDYGFVRDFVGTLTDAGCNVFIVHARNAWLQGLSPKENRDVPPL 179
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V+ L+ DFP + + INGG+ + + L +DGVM+GR AY NP+ ++ +D Y+
Sbjct: 180 RYAVVHRLRADFPGITLAINGGMDSDALVQEQLRALDGVMVGRAAYHNPWWLARWDALYH 239
Query: 251 SNLP 254
P
Sbjct: 240 GGEP 243
>gi|121593341|ref|YP_985237.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax sp. JS42]
gi|222110070|ref|YP_002552334.1| oxygen-independent coproporphyrinogen iii oxidase [Acidovorax
ebreus TPSY]
gi|120605421|gb|ABM41161.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax sp. JS42]
gi|221729514|gb|ACM32334.1| oxygen-independent coproporphyrinogen III oxidase [Acidovorax
ebreus TPSY]
Length = 414
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 155/348 (44%), Positives = 212/348 (60%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E +Y++ALL D+E +LP+I R +H+IFIGGGTPSL + +D LL +I+ L
Sbjct: 68 VPEARYIDALLADLEAALPLIWGRTVHSIFIGGGTPSLFAPESIDRLLGDIRARLRLDAG 127
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
ITLEANP TFE E+F +Y G+ RLSIG+QSFN+++L LGR H+ QA A+E A
Sbjct: 128 CEITLEANPGTFEKERFRAYRGAGVTRLSIGVQSFNDRHLQALGRVHNRAQALAAVEEAA 187
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
Q F+ FNLD++YALP QT +EL D+ A+ PPH+S+Y LTIEPNTYF KYPP +P
Sbjct: 188 QAFDTFNLDIMYALPGQTPAELDEDMRTALALQPPHISIYHLTIEPNTYFAKYPP-PLPE 246
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D M D+IT L YE+SAY++ G++ HN NYW+FGDYL
Sbjct: 247 DDAAYAMLDRITELTGAAGLARYEVSAYAREGHQCVHNRNYWQFGDYLGIGAGAHSKLSF 306
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G +IA+ + + L FEFMLNALRL++GF+ F R
Sbjct: 307 AHRVVRQVRLRDPQLYMAGALAGRAIAQDDDVRRADLPFEFMLNALRLQEGFALQDFTAR 366
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ I I + L+ AE GL+ R+ + ++PT G FL+DLQ +FL +
Sbjct: 367 TGLAITAIAAGLQQAEAQGLITRDMERVRPTQRGFDFLSDLQALFLAD 414
>gi|416893370|ref|ZP_11924558.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
gi|347813924|gb|EGY30576.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
Length = 327
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 181/239 (75%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM++ T RHCR FHRQ +R++ LYTEM T QAI+ K LDF+A EHP+A
Sbjct: 8 FYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTAQAIIHAKYDHLDFDAAEHPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKADLVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGIDD +SYDF+ +FV TV AGC+ FIVHAR A+L L+PKQNR+I
Sbjct: 128 QSAVQIPVTVKTRIGIDDFDSYDFLYNFVQTVKQAGCQEFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP+L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ + D
Sbjct: 188 PPLDYERVYQLKRDFPDLLISINGGIKTIEEIQRHLQHVDGVMVGREAYQNPSLLGHID 246
>gi|160897476|ref|YP_001563058.1| oxygen-independent coproporphyrinogen III oxidase [Delftia
acidovorans SPH-1]
gi|160363060|gb|ABX34673.1| oxygen-independent coproporphyrinogen III oxidase [Delftia
acidovorans SPH-1]
Length = 414
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 211/347 (60%), Gaps = 35/347 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ E +Y++AL+ D+E +LP+I R +H+IFIGGGTPSL + +D LL I+ L +
Sbjct: 67 ELPEDRYIDALVADLESALPLIWGRTVHSIFIGGGTPSLFAPESIDRLLAAIRARLRMEA 126
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE ++F ++ G+ RLSIG+QSF+++ L +GR HD QA+ A+ A
Sbjct: 127 DCEITMEANPGTFETDRFRAFRAAGVTRLSIGVQSFDDRLLQAVGRVHDGAQARAAVREA 186
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F FN+DL+YALP QT +L DL+ A+ ++PPHLS+Y LTIEPNTYF K+PP ++P
Sbjct: 187 ADSFETFNIDLMYALPGQTELDLARDLDVAMSFAPPHLSVYHLTIEPNTYFAKFPP-AIP 245
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D M D+IT+ + YEISAY++ G++ HN NYW+FGDYL
Sbjct: 246 EDDLAYDMLDRITARTAAAGMQRYEISAYAREGHQCWHNRNYWQFGDYLGIGAGAHSKLS 305
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G +A+ ++ + L FE+MLNALRL++GF+ F E
Sbjct: 306 FAHRIVRQVRFRDPARYMDQALAGAPLAQDGEVRRADLPFEYMLNALRLREGFALQDFME 365
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RTG+ + I L A+ GL+ R+ + PT G FL+DLQ++FL
Sbjct: 366 RTGLPLSSIAKGLDAAQAKGLITRDLGRVVPTERGFDFLSDLQELFL 412
>gi|440761201|ref|ZP_20940293.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
gi|436425131|gb|ELP22876.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
Length = 330
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 137/262 (52%), Positives = 189/262 (72%), Gaps = 3/262 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
S ++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP
Sbjct: 2 SNFSSQRFSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IK
Sbjct: 62 VALQLGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAIK 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+N
Sbjct: 122 AMRDVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKEN 181
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++
Sbjct: 182 REIPPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAQTHLQHLDGVMMGREAYQNPGILAQ 241
Query: 245 FDLNYYSNLPQYKIPTRIDIIN 266
D + Q+ +D++
Sbjct: 242 VDQTLFGR--QHPAANPVDVVR 261
>gi|333916258|ref|YP_004489990.1| oxygen-independent coproporphyrinogen III oxidase [Delftia sp.
Cs1-4]
gi|333746458|gb|AEF91635.1| oxygen-independent coproporphyrinogen III oxidase [Delftia sp.
Cs1-4]
Length = 414
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 211/347 (60%), Gaps = 35/347 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ E +Y++AL+ D+E +LP+I R +H+IFIGGGTPSL + +D LL I+ L +
Sbjct: 67 ELPEDRYIDALVADLESALPLIWGRTVHSIFIGGGTPSLFAPESIDRLLAAIRARLRMEA 126
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE ++F ++ G+ RLSIG+QSF+++ L +GR HD QA+ A+ A
Sbjct: 127 DCEITMEANPGTFETDRFRAFRAAGVTRLSIGVQSFDDRLLQAVGRVHDGAQARAAVREA 186
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F FN+DL+YALP QT +L DL+ A+ ++PPHLS+Y LTIEPNTYF K+PP ++P
Sbjct: 187 ADSFETFNIDLMYALPGQTELDLARDLDVAMSFAPPHLSVYHLTIEPNTYFAKFPP-AIP 245
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D M D+IT+ + YEISAY++ G++ HN NYW+FGDYL
Sbjct: 246 EDDLAYDMLDRITARTAAAGMQRYEISAYAREGHQCWHNRNYWQFGDYLGIGAGAHSKLS 305
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G +A+ ++ + L FE+MLNALRL++GF+ F E
Sbjct: 306 FAHRIVRQVRFRDPARYMDQALAGAPLAQDGEVRRADLPFEYMLNALRLREGFALQDFME 365
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RTG+ + I L A+ GL+ R+ + PT G FL+DLQ++FL
Sbjct: 366 RTGLPLSSIAKGLDAAQAKGLITRDLGRVVPTERGFDFLSDLQELFL 412
>gi|152987423|ref|YP_001347729.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PA7]
gi|150962581|gb|ABR84606.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PA7]
Length = 334
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 137/256 (53%), Positives = 187/256 (73%), Gaps = 3/256 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 16 RRFSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALLHGDRQRFLRHDECEHPLALQ 75
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAMRD
Sbjct: 76 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMRD 135
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY +RDFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 136 AVEIPVTVKHRIGINGRDSYAELRDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 195
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 196 LRYEVAAQLKKDFPDLEIVLNGGIKTLEDCREHLRTFDGVMLGREAYHNPYLLAAVDSQL 255
Query: 250 YSNLPQYKIPTRIDII 265
+ + Q P+R + +
Sbjct: 256 FGS--QVPPPSRSEAL 269
>gi|241758541|ref|ZP_04756659.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
gi|241321314|gb|EER57468.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
Length = 334
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 139/252 (55%), Positives = 183/252 (72%), Gaps = 2/252 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNA 61
M S R++S+APM++ TDRH R RQITR +WLY+EM + A++ G+K L FN
Sbjct: 1 MSASSLPSRRLSVAPMLDWTDRHYRFMARQITRNAWLYSEMVNSGAVVYGDKDRFLSFNE 60
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E P+A Q+G ++P LA +AK + +GY+E+NLNCGCPS RVQ G FGA LM LV+
Sbjct: 61 GEQPVALQLGGSDPHDLAIAAKAAETYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVA 120
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLN 180
DC+ AM+D VEI +TVKHRIG+D Y V DFVGT+ CRTFIVHARNA+L L+
Sbjct: 121 DCLNAMQDVVEIPVTVKHRIGVDRQTEYQVVADFVGTLREKTACRTFIVHARNAWLDGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR++P LKY +VY LK++FP+LEI+INGGI T +EI HL ++DGVM+GREAY NP
Sbjct: 181 PKENREVPPLKYEYVYRLKQEFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPM 240
Query: 241 LMSNFDLNYYSN 252
LM ++D +Y+N
Sbjct: 241 LMRDWDALFYNN 252
>gi|410085161|ref|ZP_11281881.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
gi|409768370|gb|EKN52432.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
Length = 348
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 177/239 (74%), Gaps = 1/239 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR FHR+++R++ LYTEM TT AIL K L +N EHP+A
Sbjct: 24 NLNRFSVAPMLDWTDRHCRYFHRKLSRHALLYTEMVTTGAILFGKGDYLAYNEAEHPVAL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P LA+ AKI Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+ AMR
Sbjct: 84 QLGGSDPAALAQCAKIAQERGYDEINLNVGCPSDRVQNGMFGACLMGNASLVADCVAAMR 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKI 187
D +I +TVK RIGIDD +SY+F+ DFVGTV+ GC F++H R A+L L+PK+NR+I
Sbjct: 144 DVTDIPVTVKTRIGIDDQDSYEFLCDFVGTVADRGGCEMFVIHGRKAWLSGLSPKENREI 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LKKDFP L + +NGGIKT +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 204 PPLDYPRVYQLKKDFPHLTMALNGGIKTLEEAKTHLQYMDGVMVGREAYQNPSILAQVD 262
>gi|90021133|ref|YP_526960.1| tRNA-dihydrouridine synthase A [Saccharophagus degradans 2-40]
gi|89950733|gb|ABD80748.1| TIM-barrel protein, yjbN family [Saccharophagus degradans 2-40]
Length = 331
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 181/242 (74%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
+ ++ + +APMM+ +D+HCR F RQ+T+ S LYTEM T AI+ G+++ L FN EH
Sbjct: 8 TTFDSHRFCLAPMMDWSDKHCRYFWRQLTKKSRLYTEMVVTGAIIHGDRERFLQFNNAEH 67
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
PIA QVG ++P LA+ A+I Q WGYDEINLNCGCPS+RVQNG GAILM+KP LV++CI
Sbjct: 68 PIALQVGGSDPAALAQCARIAQDWGYDEINLNCGCPSDRVQNGMIGAILMSKPELVAECI 127
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
AM+ + +I +TVKHRIGIDD+ Y+ + +FV TV+ GC TFIVHAR A+LK L+PK+N
Sbjct: 128 DAMQKACDIPVTVKHRIGIDDMEDYEALSNFVTTVAQTGCNTFIVHARKAWLKGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L+Y+ V LKK FP L I+INGGI ++ LN +DGVM+GREAY NPF +++
Sbjct: 188 REIPPLRYDLVVQLKKAFPHLNIVINGGINCLEQAKTLLNDLDGVMIGREAYHNPFFLAD 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|421481240|ref|ZP_15928826.1| coproporphyrinogen III oxidase [Achromobacter piechaudii HLE]
gi|400200690|gb|EJO33640.1| coproporphyrinogen III oxidase [Achromobacter piechaudii HLE]
Length = 406
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 208/350 (59%), Gaps = 36/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E +LP I R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 57 GEIPERAYLDALRSDLEQALPSIWGRQVVSVFIGGGTPSLLSSAGLDELLAMLRACLNVW 116
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ R S+GIQSF+N L LGR HD+ QA+ AI +
Sbjct: 117 PDAEITMEANPGTAEASRFRDYASSGVTRFSLGIQSFDNAQLKKLGRIHDADQARAAIGM 176
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A++ + NLD+++ALP QTL + DL AI + HLSLY LT+EPNT F K+PP +
Sbjct: 177 AQRAVSRVNLDMMFALPGQTLDACVADLREAISFGTEHLSLYHLTMEPNTVFAKFPPEDL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + + L YE+SAY+K G +HN+NYW+FGDYL
Sbjct: 237 PDDDTSAAMQDAVEAELAAAGLARYEVSAYAKPGARCRHNVNYWEFGDYLGIGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+++ + L FEFMLNALRLKDG
Sbjct: 297 SFHDRIVREARLRSPDSWMQAAMARDGSHLAESRQVGPEELPFEFMLNALRLKDGVPSTA 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A K GLL + +K T G FLNDLQ++FL
Sbjct: 357 FNERTGLSLAAIAHQLEAASKRGLLDGDPTRLKATPLGWRFLNDLQEMFL 406
>gi|423017549|ref|ZP_17008270.1| coproporphyrinogen III oxidase [Achromobacter xylosoxidans AXX-A]
gi|338779367|gb|EGP43811.1| coproporphyrinogen III oxidase [Achromobacter xylosoxidans AXX-A]
Length = 407
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 208/350 (59%), Gaps = 36/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E +LP I R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GGIPERAYLDALRSDLEQALPSIWGRQVVSVFIGGGTPSLLSAAGLDELLAMLRACLNVW 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E ++F Y+ G+ R S+GIQSF++ L LGR HDS QA+ AIE+
Sbjct: 118 PDAEITMEANPGTAEADRFRDYAASGVTRFSLGIQSFDDAQLKKLGRIHDSAQARAAIEM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A++ NLD+++ALP Q L + DL AI + HLSLY LT+EPNT F K+PP +
Sbjct: 178 AQRAAPRVNLDMMFALPGQPLEACVDDLRQAIGFGTEHLSLYHLTMEPNTVFAKFPPEDL 237
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 238 PDDDTSAAMQDAVEAELAAAGLARYEVSAYARPGARCRHNLNYWEFGDYLGLGPGAHGKL 297
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+++ L FEFMLNALRLKDG + L
Sbjct: 298 SFHDRIVREARLRSPESWMQAAAARDGSHLAESRQVGPDELPFEFMLNALRLKDGVAATL 357
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A GLL + ++ T G FLNDLQ++FL
Sbjct: 358 FNERTGLSLAAIAHQLEAASSKGLLDADPTRLRATPLGWRFLNDLQEMFL 407
>gi|304398443|ref|ZP_07380316.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
gi|304353948|gb|EFM18322.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
Length = 330
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 137/262 (52%), Positives = 189/262 (72%), Gaps = 3/262 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
S ++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP
Sbjct: 2 SNFSSQRFSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IK
Sbjct: 62 VALQLGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAIK 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+N
Sbjct: 122 AMRDVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKEN 181
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++
Sbjct: 182 REIPPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQ 241
Query: 245 FDLNYYSNLPQYKIPTRIDIIN 266
D + Q+ +D++
Sbjct: 242 VDQTLFGR--QHPAANPVDVVR 261
>gi|372487181|ref|YP_005026746.1| putative oxygen-independent coproporphyrinogen III oxidase
[Dechlorosoma suillum PS]
gi|359353734|gb|AEV24905.1| putative oxygen-independent coproporphyrinogen III oxidase
[Dechlorosoma suillum PS]
Length = 412
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 205/349 (58%), Gaps = 39/349 (11%)
Query: 644 DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNI 703
DE Y+ AL+ D+E +LP + RK+ +IFIGGGTPSL+S L LL ++ L
Sbjct: 63 DEAAYVAALIADLESALPSVWGRKVSSIFIGGGTPSLLSGEALHELLNAVRMRLPLLPEA 122
Query: 704 SITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 763
+TLEANP T E KF ++ G+NRLS+GIQSFN+++L LGR HDS +A+ AIE+AK
Sbjct: 123 EVTLEANPGTAEAGKFAAFRAAGVNRLSLGIQSFNDRHLEALGRIHDSAEARAAIELAKT 182
Query: 764 YFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 823
+F FNLDL+Y LP Q+ +E M DL A+ ++PPHLS Y LT+EPNT F PP +P
Sbjct: 183 HFERFNLDLMYGLPQQSQAEAMADLETALSFAPPHLSCYQLTLEPNTLFAARPP-QLPEG 241
Query: 824 DENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG------------ 871
D A MQD I + L Y +YE SA+++ GY+ +HNLNYW FGDYLG
Sbjct: 242 DTCADMQDAIEACLAAAGYVHYETSAFARPGYQCRHNLNYWTFGDYLGIGAGAHGKLTLP 301
Query: 872 --------------------NSIAKSKKIEKKC------LIFEFMLNALRLKDGFSPNLF 905
+A + ++++ L FEF++NALRL GF P LF
Sbjct: 302 DHSGFSVQRQMRWKQPKQYLEQVAAGQPVQEQHGVGADELPFEFLMNALRLNQGFDPALF 361
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+RTG+ + ++ +L+ A + GLL I PT GR FLN L + FL
Sbjct: 362 EQRTGLPLLLVRGELEKAAREGLLTLAPDCIAPTERGRRFLNALLERFL 410
>gi|90416108|ref|ZP_01224041.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
gi|90332482|gb|EAS47679.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
Length = 322
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 134/255 (52%), Positives = 189/255 (74%), Gaps = 3/255 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
RK +APM++ TDRHCR F R I++++ LYTEM TT AI+ G+ + L +A EHP+A Q
Sbjct: 4 RKFCVAPMLDWTDRHCRYFLRLISQHTMLYTEMLTTGAIIHGDSDYHLQMDAFEHPVALQ 63
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA + K+ ++ Y EINLNCGCPS+RVQNG FGA++M + ++C+ AMR+
Sbjct: 64 LGGSSPADLATACKMAAQYDYAEINLNCGCPSDRVQNGMFGAVMMKDAEITANCVSAMRE 123
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V++ ITVKHRIG+D+ +SY+F+RDFVG V+ +GC F+VHAR A+LK L+PKQNR+IP
Sbjct: 124 AVDLPITVKHRIGVDEYDSYEFLRDFVGRVTESGCEVFLVHARKAWLKGLSPKQNREIPE 183
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y+ VY LKKDFP+LEIIINGG+ T ++ HL ++DGVM+GRE Y NP+L+++ D +
Sbjct: 184 LNYDRVYRLKKDFPQLEIIINGGVTTLEQSKEHLQHLDGVMVGREVYSNPYLLASVDQDI 243
Query: 250 YSNLPQYKIPTRIDI 264
Y + + TR I
Sbjct: 244 YG--ASHGVKTRRQI 256
>gi|452878029|ref|ZP_21955266.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa VRFPA01]
gi|452185286|gb|EME12304.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa VRFPA01]
Length = 332
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 137/256 (53%), Positives = 187/256 (73%), Gaps = 3/256 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRHDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAMRD
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMRD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY +RDFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIPVTVKHRIGINGRDSYAELRDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEDCREHLRTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSNLPQYKIPTRIDII 265
+ + Q P+R + +
Sbjct: 254 FGS--QVPPPSRSEAL 267
>gi|146306962|ref|YP_001187427.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina ymp]
gi|145575163|gb|ABP84695.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas mendocina ymp]
Length = 331
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 136/237 (57%), Positives = 180/237 (75%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P+ LA AK+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSNPQDLAACAKMAEQHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYSELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L+Y+ LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAAQLKRDFPDLEIILNGGIKTLEECEQHLQTFDGVMLGREAYHNPYLLAQVD 249
>gi|395233275|ref|ZP_10411517.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
gi|394732321|gb|EJF32016.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
Length = 334
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 139/243 (57%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 7 QTPFQPHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
PIA Q+G ++P+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCI
Sbjct: 67 PIALQLGGSDPQALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCI 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+GTV+ G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIGTVAGKGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP+L + INGGIKT +E HL ++DGVM+GREAY+NP L++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPQLTMAINGGIKTLEEAKTHLEHLDGVMVGREAYQNPGLLT 246
Query: 244 NFD 246
D
Sbjct: 247 TVD 249
>gi|452125287|ref|ZP_21937871.1| coproporphyrinogen III oxidase [Bordetella holmesii F627]
gi|452128697|ref|ZP_21941274.1| coproporphyrinogen III oxidase [Bordetella holmesii H558]
gi|451924517|gb|EMD74658.1| coproporphyrinogen III oxidase [Bordetella holmesii F627]
gi|451925744|gb|EMD75882.1| coproporphyrinogen III oxidase [Bordetella holmesii H558]
Length = 407
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 215/349 (61%), Gaps = 37/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+I E+ YL+AL D+E SLP+I R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 60 DIPERAYLDALRADLEQSLPLIWGRQVISVFIGGGTPSLLSSAGLDELLAMLRACLNLWP 119
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP T E +F Y G+NRLS+GIQSF++ L LGR HD+ QA+ AI++A
Sbjct: 120 DAEITMEANPGTAEAGRFMDYGASGVNRLSLGIQSFDDTQLRKLGRIHDANQARAAIDMA 179
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
++ NLDL++ALP Q L + D+ A+ + HLS+Y LT+EPNT F KYPP +P
Sbjct: 180 QRAVPRVNLDLMFALPGQDLDACLDDVRQALGFGTEHLSMYHLTLEPNTVFAKYPP-EVP 238
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D +A+MQD + + L YE+SAY++ G S+HN+NYW+FGDYL
Sbjct: 239 DDDLSALMQDAVKATLGEAGLARYEVSAYARAGGRSKHNVNYWEFGDYLGLGPGAHGKLS 298
Query: 871 -------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLF 905
G+ IA+S+++ ++ L FEFMLNALRLKDG + + F
Sbjct: 299 FHDRIIRQARHRNPESWMAKAMAQDGSHIAESRQVGQQELPFEFMLNALRLKDGVAASTF 358
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ+IFL
Sbjct: 359 SERTGLSLAGIAHQLEAATQRGLLDADPTRLRATALGWRFLNDLQEIFL 407
>gi|421501772|ref|ZP_15948729.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina DLHK]
gi|400347515|gb|EJO95868.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina DLHK]
Length = 331
Score = 302 bits (773), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 136/237 (57%), Positives = 180/237 (75%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P+ LA AK+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSNPQDLAACAKMAEQHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYSELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L+Y+ LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAAQLKQDFPDLEIILNGGIKTLEECEQHLQTFDGVMLGREAYHNPYLLAQVD 249
>gi|330825043|ref|YP_004388346.1| yjbN family TIM-barrel protein [Alicycliphilus denitrificans K601]
gi|329310415|gb|AEB84830.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans K601]
Length = 316
Score = 302 bits (773), Expect = 7e-79, Method: Composition-based stats.
Identities = 138/243 (56%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRHCR HR ++R++ LYTEM TT A+L G+ L F EHP+A Q+G
Sbjct: 1 MSVAPMMDWTDRHCRHLHRLLSRHALLYTEMVTTGALLHGDVPRHLRFGEAEHPVALQLG 60
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA SA++ +WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V
Sbjct: 61 GSEPADLAHSARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDVV 120
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
++ +TVKHRIGID Y FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L+
Sbjct: 121 DMPVTVKHRIGIDQTEDYGFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLR 180
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y LK DFP+L I ING ++T + L +DGVM+GREAY NP+ ++ +D ++
Sbjct: 181 YEVAARLKSDFPQLTIAINGSLQTDAAVLEQLALVDGVMVGREAYHNPWWLTRWDELFFG 240
Query: 252 NLP 254
P
Sbjct: 241 AKP 243
>gi|319762963|ref|YP_004126900.1| tim-barrel protein, yjbn family [Alicycliphilus denitrificans BC]
gi|317117524|gb|ADV00013.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans BC]
Length = 316
Score = 302 bits (773), Expect = 7e-79, Method: Composition-based stats.
Identities = 138/243 (56%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRHCR HR ++R++ LYTEM TT A+L G+ L F EHP+A Q+G
Sbjct: 1 MSVAPMMDWTDRHCRHLHRLLSRHALLYTEMVTTGALLHGDVPRHLRFGEAEHPVALQLG 60
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA SA++ +WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V
Sbjct: 61 GSEPADLAHSARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDVV 120
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
++ +TVKHRIGID Y FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L+
Sbjct: 121 DMPVTVKHRIGIDQTEGYGFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLR 180
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y LK DFP+L I ING ++T + L +DGVM+GREAY NP+ ++ +D ++
Sbjct: 181 YEVAARLKSDFPQLTIAINGSLQTDAAVLEQLALVDGVMVGREAYHNPWWLTRWDELFFG 240
Query: 252 NLP 254
P
Sbjct: 241 AKP 243
>gi|253997757|ref|YP_003049820.1| oxygen-independent coproporphyrinogen III oxidase [Methylovorus
glucosetrophus SIP3-4]
gi|253984436|gb|ACT49293.1| oxygen-independent coproporphyrinogen III oxidase [Methylovorus
glucosetrophus SIP3-4]
Length = 405
Score = 302 bits (773), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 213/348 (61%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
I E Y++AL+ D+E + P++ RK+ +IF GGGTPSL S +D +L +++ L +
Sbjct: 59 IPESAYVDALIADLEQATPLVWGRKVRSIFFGGGTPSLFSAESIDRILSHVRMLTPLEYE 118
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
ITLEANP TFE E+F Y G+NR+SIGIQSFN ++L LGR H+S++A+YA E A
Sbjct: 119 AEITLEANPGTFEAERFAGYRDAGVNRISIGIQSFNPRHLQALGRIHNSEEAQYAAEHAI 178
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
+ F N NLDL+YALP QTL E + D++ AI P H+S Y LT+EPNT F+ PP ++P
Sbjct: 179 KIFGNVNLDLMYALPEQTLEEALQDMHTAIALGPTHISAYHLTLEPNTPFYYKPP-ALPD 237
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG----------- 871
+D +A MQ+ I LL ++ Y +YE SA+ K G +HNLNYW FGDYLG
Sbjct: 238 DDTSATMQEAIEHLLADHGYGHYETSAFGKAGKRCRHNLNYWVFGDYLGIGAGAHSKLSF 297
Query: 872 -----------------NSIAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFFER 908
++A+ +E++ L+ FEFM+NALRL +GF P LF
Sbjct: 298 HDRILRQSRIKQPNAYMKAVAEMSHVEEERLLDRADLGFEFMMNALRLTEGFDPKLFTTM 357
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG + ++ L+ AE+ GL+ R + I PT+ G+ FLN+L Q+FL
Sbjct: 358 TGQALSTVDPALQQAEQRGLITRTPELIAPTALGQRFLNELLQLFLEE 405
>gi|220935021|ref|YP_002513920.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996331|gb|ACL72933.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 336
Score = 302 bits (773), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 192/257 (74%), Gaps = 3/257 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APMM+ TDRHCR F R I+R++ LYTEM TT A+L G+++ L F+ +EHP+A Q
Sbjct: 19 RRVSVAPMMDWTDRHCRYFLRLISRHTLLYTEMVTTGALLHGDRERFLAFHPDEHPLALQ 78
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP +LA A++ + GYDE+NLN GCPS+RVQ+G FGA LM +P LV+DC++AMR
Sbjct: 79 LGGSEPGELAACARMAEDHGYDEVNLNVGCPSDRVQSGRFGACLMAEPQLVADCVEAMRS 138
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+ + +TVK RIGIDD +SY + F+ TV +GCRTFI+HAR A+L+ L+P++NR++P
Sbjct: 139 ACGLPVTVKTRIGIDDRDSYPELTAFIDTVQRSGCRTFIIHARKAWLQGLSPRENREVPP 198
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L++++VY LK+DFP LEII+NGG+K + L +DGVMLGREAY NP++++ D +
Sbjct: 199 LRHDWVYRLKQDFPALEIILNGGVKDLDTVSDALRQVDGVMLGREAYHNPYVLAQVDARF 258
Query: 250 YSNLPQYKIPTRIDIIN 266
Y + + +P+R ++
Sbjct: 259 YGD--AHPVPSRHQVVE 273
>gi|319943446|ref|ZP_08017728.1| coproporphyrinogen dehydrogenase [Lautropia mirabilis ATCC 51599]
gi|319743261|gb|EFV95666.1| coproporphyrinogen dehydrogenase [Lautropia mirabilis ATCC 51599]
Length = 423
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 210/347 (60%), Gaps = 36/347 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+DE YL AL D++ SLP++ R++ T+FIGGGTPSL S +D LL +++ L
Sbjct: 51 GVDENAYLTALEADLDASLPLVWGRRVVTVFIGGGTPSLFSGAAIDRLLSSLRARLPLIA 110
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ +T+EANP TFE +F Y G+NRLS+GIQSF++ L LGR HD QA A E A
Sbjct: 111 DAEVTMEANPGTFERARFADYRAAGVNRLSLGIQSFSDAKLKALGRVHDRAQACAAAEAA 170
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F FNLDL+YALP QTL EL DL A+ +SPPHLS Y LT+EPNT F ++PP +P
Sbjct: 171 AELFETFNLDLMYALPEQTLPELRADLTQALAFSPPHLSCYHLTLEPNTLFARFPP-PVP 229
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
D+ A MQD + +L ++ Y+NYE+SA+++ G+++QHNLNYW FGDYL
Sbjct: 230 DEDQAAAMQDLLGEMLGDS-YRNYEVSAWARPGHQAQHNLNYWMFGDYLGIGAGAHGKLS 288
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
GN+ + ++ L FEFMLNALRL +G LF E
Sbjct: 289 FPDRIVRQAKYKHPRRYMETALAGNACEIDEVVQPTDLPFEFMLNALRLTEGVDTALFQE 348
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RTG+ +I KL+ A + GL+ + ++PT GR FLNDL +IFL
Sbjct: 349 RTGLLPAVIRVKLRQAVERGLMVDDPARLQPTPLGRAFLNDLLEIFL 395
>gi|94499718|ref|ZP_01306255.1| Dihydrouridine synthase TIM-barrel protein yjbN [Bermanella
marisrubri]
gi|94428472|gb|EAT13445.1| Dihydrouridine synthase TIM-barrel protein yjbN [Oceanobacter sp.
RED65]
Length = 330
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 181/252 (71%), Gaps = 3/252 (1%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNKKHCLDFNAEEHP 65
N R+ APMM+ +D HCR+F R +++ ++LYTEM TT A++ G + + EEHP
Sbjct: 9 NARRFCTAPMMDWSDSHCRLFWRTLSKDAFLYTEMVTTGALIHGDGGPDRFIRYRDEEHP 68
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + PK LA+ AKI Q +GYDE+NLN GCPS+RVQN GA LM P LV+DCIK
Sbjct: 69 VALQLGGSNPKDLAQCAKIAQDFGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCIK 128
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
AM+D+VEI +TVKHRIGIDD +SY+ + FV TV++ GC TFI+H R A L L+PK+NR
Sbjct: 129 AMQDAVEIPVTVKHRIGIDDQDSYEHLHHFVDTVAATGCETFIIHGRKAILDGLSPKENR 188
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
+IP L+Y V +K+D P+LE+I+NGGIKT KE HL + DGVMLGREAY NP ++ +
Sbjct: 189 EIPPLRYEVVQQIKQDLPQLEVILNGGIKTHKEATEHLKWADGVMLGREAYHNPSVLMDV 248
Query: 246 DLNYYSNLPQYK 257
D YY + PQ K
Sbjct: 249 DALYYGHEPQTK 260
>gi|333929381|ref|YP_004502960.1| yjbN family TIM-barrel protein [Serratia sp. AS12]
gi|333934334|ref|YP_004507912.1| hypothetical protein SerAS9_4557 [Serratia plymuthica AS9]
gi|386331204|ref|YP_006027374.1| yjbN family TIM-barrel protein [Serratia sp. AS13]
gi|333475941|gb|AEF47651.1| TIM-barrel protein, yjbN family [Serratia plymuthica AS9]
gi|333493441|gb|AEF52603.1| TIM-barrel protein, yjbN family [Serratia sp. AS12]
gi|333963537|gb|AEG30310.1| TIM-barrel protein, yjbN family [Serratia sp. AS13]
Length = 336
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/242 (56%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
SKY + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 SKYAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIK
Sbjct: 68 VALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C F VHAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTVHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R++P L Y VY LK+DFP+L + INGG+KT +E HL ++DGVM+GREAY+NP +++
Sbjct: 188 REVPPLDYPRVYQLKRDFPQLTLAINGGVKTLEEAKQHLEHLDGVMMGREAYQNPGILAR 247
Query: 245 FD 246
D
Sbjct: 248 ID 249
>gi|390437556|ref|ZP_10226094.1| tRNA-dihydrouridine synthase A [Pantoea agglomerans IG1]
Length = 330
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 190/260 (73%), Gaps = 3/260 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A
Sbjct: 4 FSSQRFSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVA 63
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D +KAM
Sbjct: 64 LQLGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAVKAM 123
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+
Sbjct: 124 RDVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENRE 183
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L I +NGG+KT +E +HL ++DGVM+GREAY+NP +++ D
Sbjct: 184 IPPLDYPRVYQLKRDFPQLTIALNGGVKTLEEAQIHLQHLDGVMMGREAYQNPGILAQVD 243
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+ Q+ ++++
Sbjct: 244 QTLFGR--QHPAANPVEVVR 261
>gi|192359553|ref|YP_001981977.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
gi|190685718|gb|ACE83396.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
Length = 341
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 133/252 (52%), Positives = 185/252 (73%), Gaps = 1/252 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
+ + S R+ ++APMM + CR F R +T+ + LY+EM TT A+L G++K LD+N
Sbjct: 6 DTVPSPRLDRRFTLAPMMEWSTSDCRTFWRILTQRAVLYSEMVTTGALLYGDRKRFLDYN 65
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
A EHP+A Q+G ++P+ LA+ A+I + WGYDE+NLNCGCPS+RVQNG GA LM +P LV
Sbjct: 66 ACEHPLALQLGGSDPRALAECARIAEGWGYDEVNLNCGCPSDRVQNGMIGACLMAEPQLV 125
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++CI AM+ +V I +TVKHRIGIDD++ Y+ + FV T+++ GC TFIVHAR A+LK L+
Sbjct: 126 AECIAAMQQAVSIPVTVKHRIGIDDMDDYEGLETFVRTIAATGCNTFIVHARKAWLKGLS 185
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L+Y+ VY LK+DFP L IIINGGI T ++ L ++DGVM+GREAY NP+
Sbjct: 186 PKENREIPPLQYDKVYQLKQDFPHLNIIINGGITTLEQSQALLEHVDGVMVGREAYSNPY 245
Query: 241 LMSNFDLNYYSN 252
L++ D Y
Sbjct: 246 LLAQVDQTLYGE 257
>gi|398800266|ref|ZP_10559539.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
gi|398095794|gb|EJL86127.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
Length = 332
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/250 (54%), Positives = 184/250 (73%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHR+++ + LYTEM TT AI+ K L ++ +E
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRKLSGNTLLYTEMVTTGAIIHGKGDYLAYSEDE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 61 HPLALQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMADAALVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGID+ +SY+F+ DF+GTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVSIPVTVKTRIGIDEQDSYEFLCDFIGTVAQQGGCETFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGGIKT +E LHL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPALTMAINGGIKTLEEAKLHLQHMDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRELFGR 250
>gi|378769115|ref|YP_005197590.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
gi|365188603|emb|CCF11553.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
Length = 331
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/250 (54%), Positives = 183/250 (73%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L +N +E
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGDYLAYNEQE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ A + ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 HPVALQLGGSDPVALAQCAALAEQHGYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADG 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
IKAMRD V+I +TVK RIGIDD +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVDIPVTVKTRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L I INGG+KT +E HL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPQLTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRELFGR 250
>gi|157372686|ref|YP_001480675.1| tRNA-dihydrouridine synthase A [Serratia proteamaculans 568]
gi|157324450|gb|ABV43547.1| TIM-barrel protein, yjbN family [Serratia proteamaculans 568]
Length = 336
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/242 (56%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
SKY + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 SKYAANRFSIAPMLDWTDRHCRYFHRLLTKDTLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIK
Sbjct: 68 VALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R++P L Y VY LK+DFPEL + INGG+KT +E HL ++DGVM+GREAY+NP +++
Sbjct: 188 REVPPLDYPRVYQLKRDFPELTLAINGGVKTLEEAKQHLQHLDGVMMGREAYQNPGILAR 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|149926267|ref|ZP_01914529.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
gi|149825085|gb|EDM84297.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
Length = 314
Score = 301 bits (770), Expect = 1e-78, Method: Composition-based stats.
Identities = 140/250 (56%), Positives = 184/250 (73%), Gaps = 4/250 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR I++++WLYTEM TT A++ G++ L FN EEHP+AFQ+G ++P+
Sbjct: 1 MIDWTDRHCRRFHRAISQHTWLYTEMITTGALVYGDRNRFLAFNDEEHPVAFQLGGSDPE 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
+A+ AK I++ GYDE+N+N GCPS RVQ G FGA LM +P LV+DC+KAMRD+ ID+T
Sbjct: 61 HMARCAKWIEQAGYDELNMNVGCPSERVQKGAFGACLMAEPGLVADCVKAMRDACSIDVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIG+D S + DFVG VS AGC TFIVHARNA LK L+PK+NR IP L+Y V
Sbjct: 121 VKHRIGLDYDESETMLFDFVGKVSEAGCNTFIVHARNAVLKGLSPKENRDIPPLRYEVVK 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+ FP L+II+NGGI T + I+ HL + DG M+GREAY NP+L++ FD Q
Sbjct: 181 RLKQHFPHLQIILNGGITTLEAIESHLQWADGCMIGREAYSNPWLLAGFDEVIGKPTTQ- 239
Query: 257 KIPTRIDIIN 266
TR+D+I+
Sbjct: 240 --KTRLDVID 247
>gi|381406043|ref|ZP_09930727.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
gi|380739242|gb|EIC00306.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
Length = 330
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 188/262 (71%), Gaps = 3/262 (1%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
+ ++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP
Sbjct: 2 ATFSSQRFSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSDAEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+D +K
Sbjct: 62 VALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEATLVADAVK 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGID+++SY F+ DF+GTV+ G C TFI+HAR A+L L+PK+N
Sbjct: 122 AMRDVVSIPVTVKTRIGIDELDSYAFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKEN 181
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++
Sbjct: 182 REIPPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAQAHLEHLDGVMMGREAYQNPGILAQ 241
Query: 245 FDLNYYSNLPQYKIPTRIDIIN 266
D + Q+ ++++
Sbjct: 242 VDQQLFGR--QHPAANPVEVVR 261
>gi|394989568|ref|ZP_10382401.1| hypothetical protein SCD_01993 [Sulfuricella denitrificans skB26]
gi|393791068|dbj|GAB72040.1| hypothetical protein SCD_01993 [Sulfuricella denitrificans skB26]
Length = 398
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 219/351 (62%), Gaps = 35/351 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
+S + E++Y+ AL+ D+E +LP++ RK+ +IF+GGGTPSL S +D LL ++ LL
Sbjct: 47 ESREGVPEQEYIAALIKDLEAALPLVWGRKVVSIFMGGGTPSLFSARAIDTLLTQVRTLL 106
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
+ + ITLEANP T E +KF + G+NRLS+GIQSFN ++L LGR HD ++A++A
Sbjct: 107 PVEAHAEITLEANPGTAEAQKFADFRSAGVNRLSLGIQSFNPRHLQALGRVHDDREARFA 166
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+E+A + F+N NLDL+YALP Q + E + D+ A+ + P H+S Y LT+EPNT F+ PP
Sbjct: 167 VELALRNFDNVNLDLMYALPEQAMEEALADIREAVSFGPQHISAYHLTLEPNTVFYNKPP 226
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------- 870
++P +D +A MQ+ I + L Y++YE SA++K +HNLNYW FGDYL
Sbjct: 227 -TLPDDDMSAAMQEVIEAELAGAGYEHYETSAFAKKHQRCRHNLNYWSFGDYLGIGAGAH 285
Query: 871 ---------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPN 903
GN++ + + + + L FEFM+NALRL +GF +
Sbjct: 286 GKLTLHDQILRQVRHRQPKAYMERAMAGNALEEERTVSQGELPFEFMMNALRLTEGFPVS 345
Query: 904 LFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
LF RTG+++ L+ A++ GL++R+ +I+PT G+ FLN+L Q+FL
Sbjct: 346 LFSARTGLSLTAALPMLEEAQRRGLIERDALHIRPTLLGQRFLNELLQLFL 396
>gi|270263331|ref|ZP_06191601.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386823311|ref|ZP_10110462.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
gi|270043019|gb|EFA16113.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386379771|gb|EIJ20557.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
Length = 336
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
SKY + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 SKYAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIK
Sbjct: 68 VALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R++P L Y VY LK+DFP+L + INGG+KT +E HL ++DGVM+GREAY+NP +++
Sbjct: 188 REVPPLDYPRVYQLKRDFPQLTLAINGGVKTLEEAKQHLEHLDGVMMGREAYQNPGILAR 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|292489772|ref|YP_003532662.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|292898020|ref|YP_003537389.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|428786747|ref|ZP_19004225.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
gi|291197868|emb|CBJ44967.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|291555209|emb|CBA23447.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|426275016|gb|EKV52756.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
Length = 349
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/241 (56%), Positives = 180/241 (74%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
KY+ + S+APM++ TDRHCR FHRQ+TR + LYTEM TT AI+ K L F++EEHP+
Sbjct: 22 KYSPSRFSVAPMLDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGDYLAFSSEEHPV 81
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P LA+ AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKA
Sbjct: 82 ALQLGGSDPAALAQCAKLAERRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKA 141
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNR 185
MRD V + +TVK RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR
Sbjct: 142 MRDVVSVPVTVKTRIGIDDQDSYEFLCDFMRTVSEQGGCEMFIIHARKAWLSGLSPKENR 201
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP L + INGG+K+ E +HL ++DGVM+GREAY+NP L++
Sbjct: 202 EVPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQHLDGVMMGREAYQNPGLLAQV 261
Query: 246 D 246
D
Sbjct: 262 D 262
>gi|312173953|emb|CBX82207.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC BAA-2158]
Length = 349
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/241 (56%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
KY+ + S+APM++ TDRHCR FHRQ+TR + LYTEM TT AI+ K L F +EEHP+
Sbjct: 22 KYSPSRFSVAPMLDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGDYLAFGSEEHPV 81
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P LA+ AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKA
Sbjct: 82 ALQLGGSDPAALAQCAKLAERRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKA 141
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNR 185
MRD V + +TVK RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR
Sbjct: 142 MRDVVSVPVTVKTRIGIDDQDSYEFLCDFMRTVSEQGGCEMFIIHARKAWLSGLSPKENR 201
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP L + INGG+K+ E +HL ++DGVM+GREAY+NP L++
Sbjct: 202 EVPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQHLDGVMMGREAYQNPGLLAQV 261
Query: 246 D 246
D
Sbjct: 262 D 262
>gi|315633448|ref|ZP_07888738.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
gi|315477490|gb|EFU68232.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
Length = 327
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 184/255 (72%), Gaps = 1/255 (0%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
M+ + + + ++APM++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+
Sbjct: 1 MSQNQPHFYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFD 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
E+P+A Q+G ++P++L A++ Q+ GY EINLN GCPS+RVQNG FGA LM LV
Sbjct: 61 TAENPVALQLGGSDPEQLQHCAQLAQQRGYQEINLNVGCPSDRVQNGMFGACLMANAELV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++C++ M+ +V I +TVK RIGIDD +SYDF+ DFV V AGC+ FIVHAR A+L L+
Sbjct: 121 AECVQQMQSAVHIPVTVKTRIGIDDFDSYDFLCDFVQKVHQAGCQEFIVHARKAWLSGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PKQNR+IP L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP
Sbjct: 181 PKQNREIPPLNYERVYQLKQDFPHLLISINGGIKTTEEMQQHLKYVDGVMVGREAYQNPA 240
Query: 241 LMSNFDLNYY-SNLP 254
L+ + D + +N P
Sbjct: 241 LLGHIDHTLFDANAP 255
>gi|146282034|ref|YP_001172187.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri A1501]
gi|145570239|gb|ABP79345.1| TIM-barrel protein, yjbN family [Pseudomonas stutzeri A1501]
Length = 334
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q
Sbjct: 16 RRFSVAPMMDWTDRHCRFFLRQLSKHALLYTEMVTTGALLHGDTARFLRYDESEHPLALQ 75
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 76 LGGSVPGDLAACAKLAEVAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 135
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +++TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P
Sbjct: 136 AVGVEVTVKHRIGINGRDSYSQLCDFVGQVREAGCRSFTVHARIAILEGLSPKQNREVPP 195
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D +
Sbjct: 196 LRYDVAAQLKRDFPDLEIILNGGIKTLEECREHLQTFDGVMLGREAYHNPYLLAQVDSSL 255
Query: 250 YSN 252
+ N
Sbjct: 256 FGN 258
>gi|15806701|ref|NP_295421.1| tRNA-dihydrouridine synthase A [Deinococcus radiodurans R1]
gi|6459466|gb|AAF11254.1|AE002011_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 333
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 129/254 (50%), Positives = 181/254 (71%), Gaps = 1/254 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNA 61
M + +S+APMM+ TDRHCRMFHR +TR + LYTEM TT AIL G++ LDF+A
Sbjct: 1 MTAAPRPPHTLSVAPMMDWTDRHCRMFHRTLTRRTLLYTEMVTTGAILHGDQGRHLDFSA 60
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
EHP+A Q+G ++ LA+ A++ + WGYDE+NLNCGCPS+RV +G FGA LM P +V+
Sbjct: 61 PEHPLALQLGGSDAAALAECARLAEDWGYDEVNLNCGCPSDRVSSGSFGACLMGTPDVVA 120
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
++AMR + + +TVKHRIGIDD++SY+ + FV TV++AGC FIVHAR A+L L+P
Sbjct: 121 RAVEAMRAATRLPVTVKHRIGIDDLDSYEHLTGFVRTVAAAGCEQFIVHARKAWLSGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L+Y V LK DFP+L +++NGG+K+ E L + DGVM+GR AY+ P+L
Sbjct: 181 KENREIPPLRYEVVQQLKADFPQLTVVLNGGVKSLTEAQQALAWADGVMIGRAAYQEPYL 240
Query: 242 MSNFDLNYYSNLPQ 255
++ D + + Q
Sbjct: 241 LAAADRDVFGEDAQ 254
>gi|407769501|ref|ZP_11116876.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287423|gb|EKF12904.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 331
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 182/244 (74%), Gaps = 3/244 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAF 68
R+IS+APMM+ TDRH R F RQI+R++ LYTEM TT AI+ G +H L +N EHP+A
Sbjct: 5 RRISVAPMMDWTDRHDRYFLRQISRHALLYTEMVTTGAIIHGGADRH-LRYNTAEHPVAL 63
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA++ +I + YDEINLNCGCPS+RVQNG FGA LM P +V++C+KAM
Sbjct: 64 QLGGSNPDDLARACEIANDYAYDEINLNCGCPSDRVQNGAFGACLMATPDVVANCVKAMI 123
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+ +TVK+RIGIDD Y ++ FV TV+ AGCRTFIVHAR A+L L+PK+NR++P
Sbjct: 124 ATSNASVTVKNRIGIDDQEDYPSLKRFVETVADAGCRTFIVHARKAWLNGLSPKENREVP 183
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY VY LK++ PELEI+INGGIKT E + HL +DGVM+GREAY+NP+++S+ D
Sbjct: 184 PLKYELVYQLKQELPELEILINGGIKTLDETEEHLKQVDGVMIGREAYQNPYVLSDVDRR 243
Query: 249 YYSN 252
+Y +
Sbjct: 244 FYGD 247
>gi|227112414|ref|ZP_03826070.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 340
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/241 (57%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G
Sbjct: 23 RFSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|403059923|ref|YP_006648140.1| yjbN family TIM-barrel protein [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807249|gb|AFR04887.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 340
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/241 (57%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G
Sbjct: 23 RFSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|226940859|ref|YP_002795933.1| coproporphyrinogen III oxidase [Laribacter hongkongensis HLHK9]
gi|226715786|gb|ACO74924.1| Probable porphyrin oxidoreductase [Laribacter hongkongensis HLHK9]
Length = 406
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 207/350 (59%), Gaps = 34/350 (9%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G +DE Y++ALL D++ SLP++ R + T+FIGGGTPSL+S D LL ++ L
Sbjct: 46 GPVDEAGYIDALLADLDQSLPLVWGRSLKTVFIGGGTPSLLSAEAFDRLLSGVRARLKLD 105
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
ITLEANP T E +F Y GINRLSIGIQSF++++L+ LGR HD K+A A ++
Sbjct: 106 PQAEITLEANPGTAEAGRFREYRAAGINRLSIGIQSFDDRFLHALGRVHDGKEAHLAADL 165
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+ FNLDL+YALP QTL+E D+ A+ + P HLS Y LT+EPNT F PP +
Sbjct: 166 AADTFDTFNLDLMYALPGQTLAEAQADVTAAVAHRPTHLSCYHLTLEPNTLFAAAPPAGL 225
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--------- 871
P +D +A MQ+ I + L + +YE SA+++ G+ES+HNLNYW FGDYLG
Sbjct: 226 PDDDTSADMQEAIEARLAEAGFCHYETSAFARPGFESRHNLNYWTFGDYLGIGAGAHGKI 285
Query: 872 -------------------NSIAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFF 906
++A+ + ++ + I FEFM+NALRL G LF
Sbjct: 286 SFADRIVRQMKHKQPQAYLEAVARGQAVQNEHEIAVVDRPFEFMMNALRLTGGVPTPLFS 345
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+ + I +L A + GLL + + PT G+ FLNDL +FL +
Sbjct: 346 ERTGVPLARISRELAEAVRQGLLDADPARLAPTPQGQRFLNDLLTLFLRD 395
>gi|421785829|ref|ZP_16222252.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
gi|407752018|gb|EKF62178.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
Length = 336
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 178/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
SKY + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 SKYAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIK
Sbjct: 68 VALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R++P L Y VY LK+DFP+L + INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 188 REVPPLDYPRVYQLKRDFPQLTLAINGGVKTLGEAKQHLEHLDGVMMGREAYQNPGILAR 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|308188956|ref|YP_003933087.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
gi|308059466|gb|ADO11638.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
Length = 330
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 188/260 (72%), Gaps = 3/260 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A
Sbjct: 4 FSSQRFSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVA 63
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAM
Sbjct: 64 LQLGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAIKAM 123
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+
Sbjct: 124 RDVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENRE 183
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 184 IPPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAQTHLQHLDGVMMGREAYQNPGILAQVD 243
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+ Q+ ++++
Sbjct: 244 QTLFGR--QHPAANPVEVVR 261
>gi|254514697|ref|ZP_05126758.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
gi|219676940|gb|EED33305.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
Length = 343
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/256 (52%), Positives = 183/256 (71%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ APMM+ ++RHCR F R +++++ LYTEM TT A++ G+++ L FNAEE PIA Q+
Sbjct: 24 RFCTAPMMDWSNRHCRYFWRLLSQHARLYTEMVTTGALIHGDRQRFLQFNAEETPIALQL 83
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ A + WGYDE+NLNCGCPS+RVQNG FGA LM +P LV D + AMR +
Sbjct: 84 GGSNPDDLARCAAWAEAWGYDEVNLNCGCPSDRVQNGAFGACLMAEPELVRDAVSAMRSA 143
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
EID+TVKHRIGID + SY+ + FVGTV+ GC FIVHAR A+LK L+PK+NR++P L
Sbjct: 144 CEIDVTVKHRIGIDHMESYEELCHFVGTVADGGCSVFIVHARKAWLKGLSPKENREVPPL 203
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y +VY LK+DFP L I+INGGI++ + + HL +DGVMLGR AY NP++++ D +
Sbjct: 204 TYPWVYRLKRDFPALTIVINGGIESIDDCEPHLARVDGVMLGRSAYHNPWVLAEVDRRLF 263
Query: 251 SNLPQYKIPTRIDIIN 266
Q + R DII+
Sbjct: 264 GEPQQPRC--REDIID 277
>gi|187478425|ref|YP_786449.1| coproporphyrinogen III oxidase [Bordetella avium 197N]
gi|115423011|emb|CAJ49541.1| putative oxygen-independent coprophorphyrinogen III oxidasee
[Bordetella avium 197N]
Length = 405
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 214/349 (61%), Gaps = 37/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+I E+ YL+AL D+E ++P++ R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 DIPERAYLDALRADLEQAVPLVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLLP 117
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP T E +F Y+ G+ R S+GIQSF++ L+ LGR HDS QA+ AIE+A
Sbjct: 118 DAEITMEANPGTAEASRFLDYAASGVTRFSLGIQSFDDAQLHKLGRIHDSAQARAAIEMA 177
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
++ + NLD+++ALP Q ++ + DL A+ + HLSLY LT+EPNT F KYPP +P
Sbjct: 178 QRAVSRVNLDVMFALPGQDINACVADLREALSFGTEHLSLYHLTLEPNTVFAKYPP-ELP 236
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D++A MQD + + L + YE+SAY++ G +HN+NYW+FGDYL
Sbjct: 237 DDDDSAAMQDAVEATLADAGLARYEVSAYARQGARCKHNVNYWEFGDYLGLGPGAHGKLS 296
Query: 871 -------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLF 905
G+ +A+++++ L FEFMLNALRLKDG + + F
Sbjct: 297 FHDRIVREARHRNPESWMQRAMARDGSHVAENRQVGPDELPFEFMLNALRLKDGVAASSF 356
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+++ I +L A + GLL + ++ T+ G FLNDLQ+IFL
Sbjct: 357 SERTGLSLAAIAHQLDAASQRGLLDADPTRLRATALGWRFLNDLQEIFL 405
>gi|163856586|ref|YP_001630884.1| coproporphyrinogen III oxidase [Bordetella petrii DSM 12804]
gi|163260314|emb|CAP42616.1| putative porphyrin oxidoreductase [Bordetella petrii]
Length = 405
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 210/350 (60%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
+ E+ YL+AL D+E +LP + R++ ++F+GGGTPSL+S GLD LL ++ L
Sbjct: 57 AELPERAYLDALRADLEQALPSVWGRQVVSVFLGGGTPSLLSAAGLDELLAMLRACLNVL 116
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+NRLS+GIQSF++ L LGR HD+ QA+ AIE+
Sbjct: 117 PDAEITMEANPGTAEAGRFRDYAASGVNRLSLGIQSFDDAQLKKLGRIHDASQARAAIEM 176
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A++ + NLDL++ALP Q ++ + D+ A+ + HLSLY LT+EPNT F KYPP +
Sbjct: 177 AQRAVDRVNLDLMFALPGQDMTACLDDVRQALSFGTEHLSLYHLTLEPNTVFAKYPP-EL 235
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + + L+ YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 236 PDDDASAAMQDAVEAALQAAGLLRYEVSAYARPGARCRHNLNYWEFGDYLGLGPGAHGKL 295
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ IA+++ + L FEFMLNALRLKDG + +
Sbjct: 296 SFHDRIVREARLRNPDSWMAAAIARDGSHIAEARTVGPDELPFEFMLNALRLKDGVAASS 355
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I L+ A K GLL + ++ T G FLNDLQ++FL
Sbjct: 356 FQERTGLSLAAIAQPLQAATKRGLLDPDPTRLRATPLGWRFLNDLQEMFL 405
>gi|88706546|ref|ZP_01104250.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
gi|88699258|gb|EAQ96373.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
Length = 359
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/256 (53%), Positives = 184/256 (71%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ APMM+ +DRHCR F R ++R + LYTEM TT A++ G+++ L F+ EE PIA Q+
Sbjct: 40 RFCTAPMMDWSDRHCRYFWRLLSRRARLYTEMVTTGALIHGDRQRFLQFHEEEAPIALQL 99
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK + WGYDE+NLNCGCPS+RVQNG FGA LM + LV DCI AMR +
Sbjct: 100 GGSNPGDLARCAKWAEDWGYDEVNLNCGCPSDRVQNGAFGACLMGEASLVRDCISAMRSA 159
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
ID+TVKHRIGID + SY+ + DFVGTV+ G FIVHAR A+LK L+PK+NR++P L
Sbjct: 160 CAIDVTVKHRIGIDHMESYEELCDFVGTVAEGGSEVFIVHARKAWLKGLSPKENREVPPL 219
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y +VY LK+DFPEL I++NGGI++ ++ HL ++DGVMLGR AY NP++++ D +
Sbjct: 220 NYPWVYQLKEDFPELTIVMNGGIESLEDSQTHLGHVDGVMLGRSAYHNPWVLAEVDHRLF 279
Query: 251 SNLPQYKIPTRIDIIN 266
++ Q + R DII
Sbjct: 280 GDVKQPRY--REDIIE 293
>gi|365092309|ref|ZP_09329457.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax sp. NO-1]
gi|363415433|gb|EHL22560.1| putative oxygen-independent coproporphyrinogen III oxidase
[Acidovorax sp. NO-1]
Length = 419
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/348 (41%), Positives = 217/348 (62%), Gaps = 35/348 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E++Y++AL+ D+E +LP+I R +H+IFIGGGTPSL S +D L+ +I+ LL +
Sbjct: 73 VPEQRYIDALMADLEAALPLIWGRTVHSIFIGGGTPSLFSPAAIDRLIGDIRARLLLAPD 132
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
I LEANP TFE ++F ++ G+ RLS+G+QSFN+++L LGR HD QA A+E A
Sbjct: 133 CEINLEANPGTFEKDRFRAFRAAGVTRLSVGVQSFNDQHLKALGRVHDRAQAMAAVEEAA 192
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
F+ +NLD++YALP QT EL D+ A+ + PPH+S+Y LTIEPNTYF K+PP ++P
Sbjct: 193 ASFDTYNLDIMYALPGQTPQELEQDMLTALAFKPPHISIYHLTIEPNTYFAKFPP-AIPE 251
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D+ M D+IT + YEISAY+ G+ HN NYW+FGDYL
Sbjct: 252 DDQAYAMLDRITEMTGQAGMARYEISAYALPGHACFHNTNYWQFGDYLGIGAGAHSKLSF 311
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G ++A+ + + + L FE+MLNALRL+DGF+ F +R
Sbjct: 312 AHRVVRQVRFREPARYMDNALAGRAMAQDEDVRRAELPFEYMLNALRLRDGFALQDFMDR 371
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
TG+ + + L+ AE+ GL++R+ +++PT G FL+DLQ++FL +
Sbjct: 372 TGLPVTAVARGLEAAERKGLIERSLTHVRPTERGFDFLSDLQELFLAD 419
>gi|33592223|ref|NP_879867.1| tRNA-dihydrouridine synthase A [Bordetella pertussis Tohama I]
gi|384203526|ref|YP_005589265.1| tRNA-dihydrouridine synthase A [Bordetella pertussis CS]
gi|408416157|ref|YP_006626864.1| hypothetical protein BN118_2305 [Bordetella pertussis 18323]
gi|33571868|emb|CAE41383.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381640|gb|AEE66487.1| tRNA-dihydrouridine synthase A [Bordetella pertussis CS]
gi|401778327|emb|CCJ63730.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 337
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 182/256 (71%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+
Sbjct: 7 RLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 67 GGSEPDALAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCMKAMQDA 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVKHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L
Sbjct: 127 VDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++
Sbjct: 187 RYDVARQLKRDFPDCVIVLNGGLADAQAAQAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW 246
Query: 251 SNLPQYKIPTRIDIIN 266
P ++P+ +++
Sbjct: 247 ---PAIRLPSDAQVVD 259
>gi|388257749|ref|ZP_10134928.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
gi|387938916|gb|EIK45468.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
Length = 346
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ ++APMM + CR F R +T+ + LY+EM TT A+L G+KK LD+NA EHP+A Q
Sbjct: 22 RRFTLAPMMEWSTSDCRTFWRMLTKEAVLYSEMVTTGALLHGDKKRFLDYNACEHPLALQ 81
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA+ A+I + WGYDE+NLNCGCPS+RVQNG GA LM +P LV+DCI +M+
Sbjct: 82 LGGSNPTDLAECARIAEDWGYDEVNLNCGCPSDRVQNGMIGACLMAEPELVADCIASMQH 141
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V+I +TVKHRIGIDD+ Y + FV T+++ GC TFIVHAR A+LK L+PK+NR++P
Sbjct: 142 AVKIPVTVKHRIGIDDMEDYAGLVKFVSTIAATGCSTFIVHARKAWLKGLSPKENREVPP 201
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ VY LK+DFP+L IIINGGI T ++ L ++DGVM+GREAY NP+L++ D
Sbjct: 202 LQYDKVYQLKQDFPQLNIIINGGITTLEQTKTLLAHVDGVMIGREAYSNPYLLAEVDQQI 261
Query: 250 YSN 252
Y +
Sbjct: 262 YGS 264
>gi|409394966|ref|ZP_11246092.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409395931|ref|ZP_11246956.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409119430|gb|EKM95813.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409120335|gb|EKM96684.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
Length = 336
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 180/243 (74%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A++ G+ L ++A EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRYFLRQLSRHALLYTEMVTTGALIHGDAARYLRYDACEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA K+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPAELAACVKMAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPSLVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
SV +++TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 138 SVGLEVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREVPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEII+NGGIKT E + HL+ DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKRDFPDLEIILNGGIKTLDECEAHLHTFDGVMLGREAYHNPYLLAQVDQRL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|237809463|ref|YP_002893903.1| yjbN family TIM-barrel protein [Tolumonas auensis DSM 9187]
gi|237501724|gb|ACQ94317.1| TIM-barrel protein, yjbN family [Tolumonas auensis DSM 9187]
Length = 338
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 176/247 (71%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
S Y + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AIL K L ++ EEHP
Sbjct: 12 SGYPLNRFSIAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAILFGKGDYLQYSTEEHP 71
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
IA Q+G ++P LAK A+I + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 72 IALQLGGSDPVDLAKCARIAEDRGYDEINLNVGCPSDRVQNGRFGACLMASAQLVADCVA 131
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
AMR V+I +TVK RIGID+++SY F+ DF+ TV GC TFIVHAR A+L L+PK+NR
Sbjct: 132 AMRAEVQIPVTVKTRIGIDELDSYAFLCDFIETVQQTGCNTFIVHARKAWLSGLSPKENR 191
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
IP L Y VY LK+D+P L I INGGI + HL Y+DGVM+GREAY+NP++++
Sbjct: 192 DIPPLDYERVYQLKRDYPHLTIAINGGITDLAQAKHHLQYVDGVMVGREAYQNPYMLAQV 251
Query: 246 DLNYYSN 252
D +++
Sbjct: 252 DAQLFAD 258
>gi|406678525|ref|ZP_11085700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
gi|404621638|gb|EKB18504.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
Length = 328
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 212/326 (65%), Gaps = 24/326 (7%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+
Sbjct: 2 QAQRFSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISL 61
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMR
Sbjct: 62 QLGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMR 121
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQTFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIP 181
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L Y VY +K+D+PEL I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D
Sbjct: 182 PLDYPRVYRVKQDYPELTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNL 241
Query: 249 YYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------ 302
+ + +P+R +++ + E E N ++ M+++ GL
Sbjct: 242 VFGQI--NAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGAR 291
Query: 303 ---MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 292 AWRRHLSENACKPGAGIQVVLDAMAK 317
>gi|429220848|ref|YP_007182492.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
gi|429131711|gb|AFZ68726.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
Length = 339
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R F R ITR + LYTEM TT AIL G+K LD++ EEHP+A Q+G
Sbjct: 9 LSVAPMMDWTDRHDRFFLRLITRRALLYTEMVTTGAILHGDKGRHLDYSPEEHPLALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ A+I Q WGY EINLN GCPS+RVQ+G FGA LM P LV+ C++AMR V
Sbjct: 69 GSDPAALAECARIAQDWGYAEINLNVGCPSDRVQSGMFGACLMAHPDLVARCVEAMRAVV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+ +TVKHR+GIDD++SY+ + FV TVS AGC TFIVHAR A+L L+PK+NR+IP L+
Sbjct: 129 GVPVTVKHRLGIDDLDSYEHLTRFVQTVSGAGCETFIVHARKAWLSGLSPKENREIPPLR 188
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y V LK DFP L +++NGGIK+ ++ HL + DGVM+GREAY+NP++++ D +
Sbjct: 189 YEVVRQLKVDFPHLTVVLNGGIKSLEDSKAHLEWADGVMIGREAYQNPYMLALADAVLFG 248
Query: 252 N 252
+
Sbjct: 249 D 249
>gi|336125336|ref|YP_004567384.1| NIFR3-like protein [Vibrio anguillarum 775]
gi|335343059|gb|AEH34342.1| NIFR3-like protein [Vibrio anguillarum 775]
Length = 326
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 177/236 (75%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
K+S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 KLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LA AK+ Q++GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V
Sbjct: 66 GSNPQDLAHCAKLAQQYGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKSVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD++SY+F+ DF+ VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDMDSYEFLTDFISLVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y+ Y LKKDFP L I +NGG+KT E+ HL ++DGVM+GREAY++P+L++ D
Sbjct: 186 DYSRAYQLKKDFPHLVIAVNGGVKTLAEVSEHLQHLDGVMIGREAYQSPYLLAEVD 241
>gi|387872936|ref|YP_005804323.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
gi|283480036|emb|CAY75952.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
Length = 332
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 179/245 (73%), Gaps = 1/245 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE 62
M+ K + SIAPM++ TDRHCR FHRQ+T+ + LY+EM TT AI+ K L F++E
Sbjct: 1 MMTEKLPAHRFSIAPMLDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGDYLAFSSE 60
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP+A Q+G ++P LA AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 EHPVALQLGGSDPAALAHCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVAD 120
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNP 181
IKAMRD V + +TVK RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+P
Sbjct: 121 GIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y VY LK+DFP L + INGG+K+ E +HL Y+DGVM+GREAY+NP L
Sbjct: 181 KENREIPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQYLDGVMMGREAYQNPGL 240
Query: 242 MSNFD 246
++ D
Sbjct: 241 LAQVD 245
>gi|372275615|ref|ZP_09511651.1| tRNA-dihydrouridine synthase A [Pantoea sp. SL1_M5]
Length = 330
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 189/260 (72%), Gaps = 3/260 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A
Sbjct: 4 FSSQRFSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVA 63
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D +KAM
Sbjct: 64 LQLGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAVKAM 123
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+
Sbjct: 124 RDVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENRE 183
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 184 IPPLDYPRVYQLKRDFPQLTIALNGGVKTLEEALTHLQHLDGVMMGREAYQNPGILAQVD 243
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+ Q+ ++++
Sbjct: 244 QTLFGR--QHPAANPVEVVR 261
>gi|163857356|ref|YP_001631654.1| tRNA-dihydrouridine synthase A [Bordetella petrii DSM 12804]
gi|163261084|emb|CAP43386.1| putative dihydrouridine synthase [Bordetella petrii]
Length = 358
Score = 299 bits (765), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 180/256 (70%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + + LYTEM TT A+L GN LDF+A EHP+A Q+
Sbjct: 28 RLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGNVGRHLDFDAAEHPVALQL 87
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA +A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 88 GGSEPDALAHAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCMKAMQDA 147
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +T+KHR+G+D SY FVRDFVG + + GCR FIVHARNA LK L+PK NR+IP L
Sbjct: 148 VDLPVTIKHRLGLDYDESYSFVRDFVGAIHATGCRVFIVHARNAVLKGLSPKDNREIPPL 207
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK DFP+ I++NGG+ + DGVMLGR A+ P ++S + +
Sbjct: 208 RYDVARQLKADFPDSVIVLNGGLADAAQAVGAAGEFDGVMLGRAAWHTPRVLSEVSMQLW 267
Query: 251 SNLPQYKIPTRIDIIN 266
P ++PT +++
Sbjct: 268 ---PSVRLPTDAQVVD 280
>gi|114330337|ref|YP_746559.1| coproporphyrinogen III oxidase [Nitrosomonas eutropha C91]
gi|114307351|gb|ABI58594.1| coproporphyrinogen III oxidase, anaerobic [Nitrosomonas eutropha
C91]
Length = 411
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 215/371 (57%), Gaps = 43/371 (11%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + AI+ + + E +Y+ AL D+ELSLP I R + ++F+GGGTPSL S
Sbjct: 36 KCPYCDFNSHAIDPNSA---LPEAEYVAALKRDLELSLPQIWGRPVTSVFLGGGTPSLFS 92
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
+D +L + LL F ITLEANP T E +KF + GINRLSIGIQSFN +L
Sbjct: 93 GASIDAILSYARMLLSFAPETEITLEANPGTLEAQKFADFRSAGINRLSIGIQSFNPGHL 152
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR H+ +A A+E A Q+F+N NLDL+YALPNQT E + D+ A + PH+S Y
Sbjct: 153 QALGRIHNDAEASRAVEQALQHFSNINLDLMYALPNQTQDEALQDIEAACGWGVPHISAY 212
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LT+EPNT F++ PP +P D +A MQ I +L Y++YE SA+++ G HN+N
Sbjct: 213 HLTLEPNTLFYRQPP-KLPDEDTSADMQIMIERVLAEKGYQHYETSAFAQPGRMCVHNMN 271
Query: 863 YWKFGDYLG---------------------------------------NSIAKSKKIEKK 883
YW++GDYLG N +A +++ +
Sbjct: 272 YWQYGDYLGIGAGAHSKISFREKIIRQMRHKHPRHYLEQAAARNTNLENMLATEQEVGPQ 331
Query: 884 CLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 943
IFEFM+NALRL DGF P LF RTG+ + I+ +L AE+ GL++ + I+PT+ GR
Sbjct: 332 DRIFEFMMNALRLTDGFDPGLFHTRTGLTVASIQQQLTTAEQRGLIEWQHDCIRPTADGR 391
Query: 944 YFLNDLQQIFL 954
FLNDL +IFL
Sbjct: 392 RFLNDLLEIFL 402
>gi|383191973|ref|YP_005202101.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590231|gb|AEX53961.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 342
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 138/249 (55%), Positives = 179/249 (71%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ ++ ++ S+APM++ TDRHCR FHR +T + LYTEM TT AI+ K L F EEH
Sbjct: 11 TTPFSAQRFSVAPMLDWTDRHCRHFHRLMTGQTLLYTEMVTTGAIIHGKGDYLGFGDEEH 70
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P++ Q+G + P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCI
Sbjct: 71 PVSLQLGGSNPADLAHCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGQASLVADCI 130
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ VS GC TFI+HAR A+L L+PK+
Sbjct: 131 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIRQVSENGGCDTFIIHARKAWLSGLSPKE 190
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIKT +E HL Y+DGVM+GREAY+NP ++
Sbjct: 191 NREIPPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKTHLQYMDGVMVGREAYQNPGILL 250
Query: 244 NFDLNYYSN 252
N D + +
Sbjct: 251 NVDRELFGS 259
>gi|354596235|ref|ZP_09014252.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
gi|353674170|gb|EHD20203.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
Length = 346
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 134/246 (54%), Positives = 183/246 (74%), Gaps = 1/246 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
K+ + S+APM++ TDRHCR F R++TR++ LYTEM TT AI+ K L ++ EEHP+
Sbjct: 22 KHPPHRFSVAPMLDWTDRHCRYFLRRLTRHALLYTEMVTTGAIIHGKGDYLAYSEEEHPL 81
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA+ A++ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DC+KA
Sbjct: 82 ALQLGGSDPEALAQCAQLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAPLVADCVKA 141
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNR 185
M+D V I +TVK RIGIDD +SY+F+ DF+ TV+ GC TFIVHAR A+L L+PK+NR
Sbjct: 142 MKDRVAIPVTVKTRIGIDDRDSYEFLCDFIHTVAERGGCDTFIVHARKAWLSGLSPKENR 201
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
+IP L Y VY LK+DFP L I INGG+KT +E +HL ++DGVM+GREAY NP +++
Sbjct: 202 EIPPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKIHLQHLDGVMMGREAYHNPGILAQV 261
Query: 246 DLNYYS 251
D +
Sbjct: 262 DAELFG 267
>gi|440232766|ref|YP_007346559.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
gi|440054471|gb|AGB84374.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
Length = 348
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/266 (51%), Positives = 186/266 (69%), Gaps = 3/266 (1%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N +N + SIAPM++ TDRHCR FHR +++ + LYTEM TT AI+ K L ++
Sbjct: 16 NGAERPFNASRFSIAPMLDWTDRHCRYFHRLLSKETLLYTEMVTTGAIIHGKGDYLAYSE 75
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
+EHP+A Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+
Sbjct: 76 QEHPLALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQAALVA 135
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLN 180
DCIKAMRD+V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+
Sbjct: 136 DCIKAMRDAVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLS 195
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR++P L Y VY LK+DFP L I INGG+K+ E HL ++DGVM+GREAY+NP
Sbjct: 196 PKENREVPPLDYPRVYQLKRDFPALTIAINGGVKSLAEAQQHLQHVDGVMMGREAYQNPG 255
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDIIN 266
+++ D + + Q + ++++
Sbjct: 256 ILAQVDRELFGS--QAAVRNSVEVVE 279
>gi|332529687|ref|ZP_08405641.1| putative oxygen-independent coproporphyrinogen III oxidase
[Hylemonella gracilis ATCC 19624]
gi|332040708|gb|EGI77080.1| putative oxygen-independent coproporphyrinogen III oxidase
[Hylemonella gracilis ATCC 19624]
Length = 397
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 215/350 (61%), Gaps = 38/350 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ E++YL+AL+ D+E SLP+I R + +IFIGGGTPSL S TG++ LL +I+ L
Sbjct: 48 EVPEQRYLDALIADLEASLPLIWGRPVQSIFIGGGTPSLFSPTGINRLLSDIRARLRLAA 107
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE ++F ++ G+ RLS+G+QSFN+ +L LGR HD QA A+E A
Sbjct: 108 DCEITLEANPGTFEKDRFAAFRAAGVTRLSVGVQSFNDAHLKALGRVHDRAQALAALEEA 167
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F +NLDL+YALP Q+L++L DL+ A+ ++PPHLS+Y LTIEPNTYF K+PP P
Sbjct: 168 ARSFETWNLDLMYALPGQSLTQLDADLDAALSFAPPHLSVYHLTIEPNTYFAKFPP-QTP 226
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
D M D+IT + YE+SAY++ G+ +HNLNYW+FGDYL
Sbjct: 227 DEDTAYAMLDRITERTGASGLGRYEVSAYAQPGHGCRHNLNYWQFGDYLGIGAGAHGKLS 286
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+++ + +++ + L FEFMLNALRL++GF+
Sbjct: 287 FAHRVIRQVRAREPRLYMERALSADPGSAVVQDEEVSRADLPFEFMLNALRLREGFALQD 346
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F +RTG+ + I+ L+ AE+ G L R+ PT G FL+DLQ +FL
Sbjct: 347 FADRTGLALTAIQKPLEEAERKGWLTRDLNRAWPTEQGFDFLSDLQALFL 396
>gi|332528538|ref|ZP_08404526.1| tRNA-dihydrouridine synthase A [Hylemonella gracilis ATCC 19624]
gi|332042049|gb|EGI78387.1| tRNA-dihydrouridine synthase A [Hylemonella gracilis ATCC 19624]
Length = 339
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 133/257 (51%), Positives = 182/257 (70%), Gaps = 22/257 (8%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRHCR FHR ++R + LYTEM TT A+L G+ L F+ EHP+A Q+G +EP
Sbjct: 1 MIDWTDRHCRYFHRLLSRRARLYTEMITTGALLHGDVARHLRFDDAEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---- 132
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+++
Sbjct: 61 DLAACARLGEQWGYDEINLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMRDALQNPER 120
Query: 133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 192
+ +TVKHR+GID + YDFVRDFVGTV+ AGC TFIVHARNA+L+ L+PK+NR+IP L+Y
Sbjct: 121 VPVTVKHRVGIDRVERYDFVRDFVGTVAEAGCTTFIVHARNAWLQGLSPKENREIPPLRY 180
Query: 193 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-----------------IDGVMLGREA 235
FV+ LK+DFP L+++INGG+ + ++ L +DG M+GREA
Sbjct: 181 EFVHRLKRDFPSLKVVINGGLTSDAQVLEQLQGADSPQAAADQAGGGPVPLDGAMIGREA 240
Query: 236 YKNPFLMSNFDLNYYSN 252
Y NP+ ++++D Y+
Sbjct: 241 YHNPWWLASWDRLYFGE 257
>gi|117618436|ref|YP_858131.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559843|gb|ABK36791.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 328
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 149/325 (45%), Positives = 213/325 (65%), Gaps = 26/325 (8%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ SIAPM++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHPI+ Q+
Sbjct: 4 QRFSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD
Sbjct: 64 GGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDV 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VDIPVTVKTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNY 249
Y VY +K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L +
Sbjct: 184 DYPRVYRVKQDYPDLTIAINGGVTSMEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVF 243
Query: 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------- 302
N +P+R +++ + E E N ++ M+++ GL
Sbjct: 244 GQN---NAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARA 292
Query: 303 --MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 293 WRRHLSENACKPGADIQVVLDAMAK 317
>gi|399521008|ref|ZP_10761780.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399111497|emb|CCH38339.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 391
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 180/237 (75%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q
Sbjct: 73 RRFSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQ 132
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P+ LA AK+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D
Sbjct: 133 LGGSNPQDLATCAKMAEEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMQD 192
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 193 AVNIPVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPP 252
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L+Y+ LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D
Sbjct: 253 LRYDVAAQLKQDFPDLEIILNGGIKTLEECEQHLQTFDGVMLGREAYHNPYLLAQVD 309
>gi|344943243|ref|ZP_08782530.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
gi|344260530|gb|EGW20802.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
Length = 331
Score = 298 bits (763), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 135/253 (53%), Positives = 187/253 (73%), Gaps = 6/253 (2%)
Query: 6 SKYNK-----RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
SK NK RK +APM++ TDRHCR FHR I+++++LYTEM TT A++ G+ L F
Sbjct: 3 SKQNKKPHPGRKFCVAPMLDWTDRHCRYFHRLISQHAFLYTEMVTTGALIHGDHHRFLQF 62
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+A E P+AFQ+G + P++LA AK+I+ +GYDE+NLN GCPS+RVQNG FGA LM +P L
Sbjct: 63 SAAERPVAFQLGGSNPRELAICAKMIEDYGYDEVNLNVGCPSDRVQNGRFGACLMAEPEL 122
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V++C+ AM +V I +TVK RIGID+ +SY+ + FV TV+ AGC TFI+HAR A+L L
Sbjct: 123 VAECVAAMAQAVSIPVTVKSRIGIDERDSYEELVHFVSTVADAGCETFIIHARKAWLSGL 182
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PKQNR +P L+Y+ Y +K+DFP+LEII+NGGI T + + L ++DGVM+GREAY NP
Sbjct: 183 SPKQNRDVPPLRYDVAYQIKQDFPQLEIILNGGITTLDQAEAVLAHVDGVMVGREAYHNP 242
Query: 240 FLMSNFDLNYYSN 252
+L++ D +Y
Sbjct: 243 YLLAEVDRRFYGE 255
>gi|339482768|ref|YP_004694554.1| oxygen-independent coproporphyrinogen III oxidase [Nitrosomonas sp.
Is79A3]
gi|338804913|gb|AEJ01155.1| oxygen-independent coproporphyrinogen III oxidase [Nitrosomonas sp.
Is79A3]
Length = 403
Score = 298 bits (763), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 214/367 (58%), Gaps = 38/367 (10%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + AI S E++Y+ AL+ D+E +L + R++ ++F GGGTPSL S
Sbjct: 33 KCPYCDFNSHAIRGEGS--QAPEEEYVAALIRDLEFALQDVWGRRLSSVFFGGGTPSLFS 90
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
+D +L ++ LL + +TLEANP TFE +KF + GINRLSIGIQSFN ++L
Sbjct: 91 AKAIDAILTAVRTLLPLEHFAEVTLEANPGTFEAQKFADFRAAGINRLSIGIQSFNAQHL 150
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR HD ++A A+EIA + F+N NLDL+YALP QTL E D+ A H+S Y
Sbjct: 151 KALGRVHDDQEAHRAVEIALKNFDNINLDLMYALPGQTLEEAQADIEMACSLGVTHISAY 210
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LT+EPNT F ++PP ++P +++ A MQ+ I ++ Y+NYE SA+++ G ES+HN+N
Sbjct: 211 HLTLEPNTLFHRFPP-NLPDDEQAAAMQEMIEQTTASHQYRNYETSAFARAGKESRHNMN 269
Query: 863 YWKFGDYLGNSIAKSKKIE-----------------------KKCLI------------F 887
YW FGDYLG KI + LI F
Sbjct: 270 YWLFGDYLGIGAGAHSKISFADKIVRQMRTKQPKEYLSKANAAESLIQTQQILTPADRGF 329
Query: 888 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 947
EFM+NALRL GF +F ERTG+ + ++ +L AE+ GLL +N IKPT GR FLN
Sbjct: 330 EFMMNALRLTGGFETAVFQERTGLPVAAVQKQLDEAEQRGLLVHDNHRIKPTVLGRRFLN 389
Query: 948 DLQQIFL 954
DL Q+FL
Sbjct: 390 DLLQLFL 396
>gi|33596533|ref|NP_884176.1| tRNA-dihydrouridine synthase A [Bordetella parapertussis 12822]
gi|410472643|ref|YP_006895924.1| hypothetical protein BN117_1983 [Bordetella parapertussis Bpp5]
gi|412338731|ref|YP_006967486.1| hypothetical protein BN112_1414 [Bordetella bronchiseptica 253]
gi|427815210|ref|ZP_18982274.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|33566302|emb|CAE37215.1| conserved hypothetical protein [Bordetella parapertussis]
gi|408442753|emb|CCJ49316.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|408768565|emb|CCJ53331.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
gi|410566210|emb|CCN23770.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 337
Score = 298 bits (763), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 182/256 (71%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+
Sbjct: 7 RLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 67 GGSEPDALAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPGLVADCMKAMQDA 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVKHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L
Sbjct: 127 VDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++
Sbjct: 187 RYDVARQLKRDFPDCVIVLNGGLADAQAARAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW 246
Query: 251 SNLPQYKIPTRIDIIN 266
P ++P+ +++
Sbjct: 247 ---PAIRLPSDAQVVD 259
>gi|410420715|ref|YP_006901164.1| hypothetical protein BN115_2933 [Bordetella bronchiseptica MO149]
gi|427819484|ref|ZP_18986547.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427825045|ref|ZP_18992107.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|408448010|emb|CCJ59689.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|410570484|emb|CCN18666.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410590310|emb|CCN05394.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 337
Score = 298 bits (763), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 182/256 (71%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+
Sbjct: 7 RLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 67 GGSEPDALAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPGLVADCMKAMQDA 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVKHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L
Sbjct: 127 VDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++
Sbjct: 187 RYDVARQLKRDFPDCVIVLNGGLADAQAAQAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW 246
Query: 251 SNLPQYKIPTRIDIIN 266
P ++P+ +++
Sbjct: 247 ---PAIRLPSDAQVVD 259
>gi|227326002|ref|ZP_03830026.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 340
Score = 298 bits (763), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 137/241 (56%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G
Sbjct: 23 RFSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECDTFIVHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTLAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|423205254|ref|ZP_17191810.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
gi|404624337|gb|EKB21172.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
Length = 328
Score = 298 bits (763), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 213/325 (65%), Gaps = 26/325 (8%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+
Sbjct: 4 QRFSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD
Sbjct: 64 GGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDV 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VDIPVTVKTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNY 249
Y VY +K+D+PEL I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L +
Sbjct: 184 DYPRVYRVKQDYPELTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVF 243
Query: 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------- 302
N +P+R +++ + E E N ++ M+++ GL
Sbjct: 244 GQN---NAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARA 292
Query: 303 --MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 293 WRRHLSENACKPGADIQVVLDAMAK 317
>gi|330828271|ref|YP_004391223.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
gi|328803407|gb|AEB48606.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
Length = 328
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 213/325 (65%), Gaps = 26/325 (8%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+
Sbjct: 4 QRFSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD
Sbjct: 64 GGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDV 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VDIPVTVKTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNY 249
Y VY +K+D+PEL I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L +
Sbjct: 184 DYPRVYRVKQDYPELTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVF 243
Query: 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------- 302
N +P+R +++ + E E N ++ M+++ GL
Sbjct: 244 GQN---NAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARA 292
Query: 303 --MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 293 WRRHLSENACKPGADIQVVLDAMAK 317
>gi|404398748|ref|ZP_10990332.1| tRNA-dihydrouridine synthase A [Pseudomonas fuscovaginae UPB0736]
Length = 331
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+++ L +NA EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRYFLRLLSKHTLLYTEMVTTGAILHGDRERFLRYNASEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPADLAACARLAEDAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVG V AGC +F VHAR A L+ L+PK+NR+IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEALCDFVGQVREAGCGSFTVHARIAILEGLSPKENREIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAARLKQDFPELEIVLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAQVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|313667754|ref|YP_004048038.1| dihydrouridine synthase [Neisseria lactamica 020-06]
gi|313005216|emb|CBN86649.1| Putative dihydrouridine synthase [Neisseria lactamica 020-06]
Length = 336
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK ++ +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAVEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ CRTFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVHIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACRTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FPELEIIINGGI + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPELEIIINGGITANEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|423198255|ref|ZP_17184838.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
gi|404630479|gb|EKB27156.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
Length = 328
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/325 (45%), Positives = 213/325 (65%), Gaps = 26/325 (8%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ SIAPM++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHPI+ Q+
Sbjct: 4 QRFSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD
Sbjct: 64 GGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDL 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VDIPVTVKTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNY 249
Y VY +K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L +
Sbjct: 184 DYPRVYRVKQDYPDLTIAINGGVTSLEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVF 243
Query: 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------- 302
N +P+R +++ + E E N ++ M+++ GL
Sbjct: 244 GQN---KAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARA 292
Query: 303 --MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 293 WRRHLSENACKPGADIQVVLDAMAK 317
>gi|421498959|ref|ZP_15946026.1| dusA [Aeromonas media WS]
gi|407181999|gb|EKE55989.1| dusA [Aeromonas media WS]
Length = 331
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 210/326 (64%), Gaps = 24/326 (7%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++ SIAPM++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHP+A
Sbjct: 5 QAQRFSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPLAL 64
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA+ A++ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAMR
Sbjct: 65 QLGGSNPADLARCARLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMR 124
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D V I +TVK RIGID+ +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP
Sbjct: 125 DVVNIPVTVKTRIGIDEQDSYEFLQAFIEQVRDAGCETFIVHARKAWLSGLSPKENREIP 184
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L Y VY +K+D+PEL I +NGG+ + ++ HL +DGVM+GREAY+NP++++ D
Sbjct: 185 PLDYPRVYQVKQDYPELTIALNGGVNSLEQTLEHLQQVDGVMMGREAYQNPYILAEVDNR 244
Query: 249 YYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------ 302
+ ++P+R +++ + E E N ++ M+++ GL
Sbjct: 245 VFGL--GGEVPSRHEVVRMMLPYMEQE--------LAKGNYLSHMTRHMLGLFQNMQGAR 294
Query: 303 ---MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 295 AWRRHLSENACKPGAGIQVVLDAMAK 320
>gi|226945328|ref|YP_002800401.1| tRNA-dihydrouridine synthase A [Azotobacter vinelandii DJ]
gi|226720255|gb|ACO79426.1| Dihydrouridine synthase yjbN family protein [Azotobacter vinelandii
DJ]
Length = 336
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 179/246 (72%), Gaps = 2/246 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ +APM++ TDRHCR F RQ++ ++ LYTEM TT A+L G+ + L EHP+A Q
Sbjct: 18 RRFCVAPMLDWTDRHCRFFLRQLSYHALLYTEMVTTGALLHGDARRFLRHERMEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDEINLN GCPS+RVQN GA LM P V+DC+KAMRD
Sbjct: 78 LGGSVPGELAACARLAEEAGYDEINLNVGCPSDRVQNNLIGACLMGDPARVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGID +SY +RDFVG V AGCR+FIVHAR A L L+PK+NR+IP
Sbjct: 138 AVTIPVTVKHRIGIDGRDSYGELRDFVGQVCEAGCRSFIVHARIAILAGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y V LK+DFP+LEI++NGGIKT +E LHL DGVM+GREAY NP+L++ D
Sbjct: 198 LRYEIVAQLKQDFPDLEIVLNGGIKTLEECRLHLRSFDGVMIGREAYHNPYLLAQVDREL 257
Query: 250 Y-SNLP 254
+ S LP
Sbjct: 258 FDSPLP 263
>gi|33601086|ref|NP_888646.1| tRNA-dihydrouridine synthase A [Bordetella bronchiseptica RB50]
gi|33575521|emb|CAE32599.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 337
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 182/256 (71%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+
Sbjct: 7 RLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 67 GGSEPDALAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPGLVADCMKAMQDA 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVKHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L
Sbjct: 127 VDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++
Sbjct: 187 RYDVARQLKRDFPDCVIVLNGGLADAQAARAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW 246
Query: 251 SNLPQYKIPTRIDIIN 266
P ++P+ +++
Sbjct: 247 ---PAIRLPSDAQVVD 259
>gi|325981769|ref|YP_004294171.1| oxygen-independent coproporphyrinogen III oxidase [Nitrosomonas sp.
AL212]
gi|325531288|gb|ADZ26009.1| oxygen-independent coproporphyrinogen III oxidase [Nitrosomonas sp.
AL212]
Length = 404
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 217/355 (61%), Gaps = 36/355 (10%)
Query: 635 ELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 694
EL + E++Y+ L+ D+E +L + R+++++F+GGGTPSL S +D +L ++
Sbjct: 37 ELRTDESRVPEEEYVATLIRDLESALQDVWGRRLNSVFLGGGTPSLFSAGAMDAVLTAVR 96
Query: 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQA 754
LL + +TLEANP TFE +KF + GINRLSIGIQSFN ++L LGR HD ++A
Sbjct: 97 TLLPLEHFAEVTLEANPGTFEAQKFADFRKAGINRLSIGIQSFNPQHLKALGRVHDDQEA 156
Query: 755 KYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 814
A++IA +YF+N NLDL+YALP QTL D+ A H+S Y LT+EPNT F++
Sbjct: 157 HRAVDIALKYFDNINLDLMYALPGQTLEHAQADIEAACACGVTHISAYHLTLEPNTLFYR 216
Query: 815 YPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--- 871
+PP +P ++ A MQD I ++ Y+NYE SA+++ G ES+HN+NYW FGDY+G
Sbjct: 217 FPP-KLPDDEAAAAMQDMIEQTTSDHQYRNYETSAFARAGKESRHNVNYWLFGDYVGIGA 275
Query: 872 ----------------------NSIAKSK------KIEKKCLI----FEFMLNALRLKDG 899
+AK++ +++++ + FEFM+NALRL G
Sbjct: 276 GAHSKISFADKIVRQMRYKQPKEYLAKARMGGSLIQVQQELTVADRSFEFMMNALRLTGG 335
Query: 900 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F LF ERTG+ I +++ +L AE+ GLL ++ IKPT GR FLNDL QIFL
Sbjct: 336 FDTPLFQERTGLPIAVVQQQLDEAEQRGLLVHDHLRIKPTVLGRRFLNDLLQIFL 390
>gi|50122581|ref|YP_051748.1| tRNA-dihydrouridine synthase A [Pectobacterium atrosepticum
SCRI1043]
gi|49613107|emb|CAG76558.1| putative dihydrouridine synthase [Pectobacterium atrosepticum
SCRI1043]
Length = 340
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 178/236 (75%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G
Sbjct: 23 RFSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM LV+DCIKAM+DS
Sbjct: 83 GSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGDAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ +F+ TV+ G C TFIVHAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCEFIQTVAERGECDTFIVHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L I INGG+KT +E +HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 DYPRVYQLKRDFPALTIAINGGVKTLEEAKMHLQHLDGVMMGREAYQNPGILAQVD 258
>gi|26988893|ref|NP_744318.1| tRNA-dihydrouridine synthase A [Pseudomonas putida KT2440]
gi|38604779|sp|Q88KX0.1|DUSA_PSEPK RecName: Full=tRNA-dihydrouridine synthase A
gi|24983702|gb|AAN67782.1|AE016409_8 TIM-barrel protein, yjbN family [Pseudomonas putida KT2440]
Length = 336
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|421522095|ref|ZP_15968741.1| tRNA-dihydrouridine synthase A [Pseudomonas putida LS46]
gi|402754094|gb|EJX14582.1| tRNA-dihydrouridine synthase A [Pseudomonas putida LS46]
Length = 336
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|16329480|ref|NP_440208.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|383321221|ref|YP_005382074.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324391|ref|YP_005385244.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490275|ref|YP_005407951.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435541|ref|YP_005650265.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|451813639|ref|YP_007450091.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
gi|2829606|sp|P72872.1|DUS2_SYNY3 RecName: Full=Probable tRNA-dihydrouridine synthase 2
gi|1651962|dbj|BAA16888.1| sll0926 [Synechocystis sp. PCC 6803]
gi|339272573|dbj|BAK49060.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|359270540|dbj|BAL28059.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273711|dbj|BAL31229.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276881|dbj|BAL34398.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957359|dbj|BAM50599.1| tRNA-dihydrouridine synthase A [Bacillus subtilis BEST7613]
gi|451779608|gb|AGF50577.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
Length = 334
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/257 (54%), Positives = 192/257 (74%), Gaps = 7/257 (2%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R F RQ+TR++ LYTEM T QAIL G+++ L+F+ EE P+A Q+G
Sbjct: 13 LSVAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGDRQRLLNFSPEEKPVALQLG 72
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ A+I Q WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ C+ AM+ +V
Sbjct: 73 GDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAV 132
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
EI +TVKHRIGID +SY+ + FV V++AGC+ F VHAR A+L+ L+PK+NR IP L+
Sbjct: 133 EIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQRFTVHARKAWLQGLSPKENRTIPPLR 192
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY- 250
Y VY LKKDFP+L I INGGI ++I HL+++D VM+GR AY+NP+L + D + Y
Sbjct: 193 YEDVYQLKKDFPQLLIEINGGITQTEQIQQHLSHVDAVMVGRAAYENPYLFATVDRDIYH 252
Query: 251 -SNLPQYKIPTRIDIIN 266
+NL +P+R +II
Sbjct: 253 KTNL----VPSRAEIIE 265
>gi|421745269|ref|ZP_16183127.1| tRNA-dihydrouridine synthase A [Cupriavidus necator HPC(L)]
gi|409776291|gb|EKN57710.1| tRNA-dihydrouridine synthase A [Cupriavidus necator HPC(L)]
Length = 302
Score = 298 bits (762), Expect = 1e-77, Method: Composition-based stats.
Identities = 136/227 (59%), Positives = 172/227 (75%), Gaps = 5/227 (2%)
Query: 39 LYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 97
+YTEM TT A+L G+ LDF+ E P+A Q+G +EP LA SAK+ ++WGY EINLNC
Sbjct: 1 MYTEMVTTGALLHGDVARHLDFDPAEQPVALQLGGSEPADLAASAKLGERWGYAEINLNC 60
Query: 98 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 157
GCPS RVQ G FGA LM +P LV+DC++AMRD+V + +TVKHRIGID I YDFVRDFVG
Sbjct: 61 GCPSERVQRGAFGACLMAEPQLVADCVRAMRDAVSVPVTVKHRIGIDTIEHYDFVRDFVG 120
Query: 158 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 217
T++ AGC+TFIVHARNA LK L+PK+NR+IP L+Y Y LK++FP+LEI+INGGI
Sbjct: 121 TIAEAGCQTFIVHARNAILKGLSPKENREIPPLRYEVAYQLKREFPQLEILINGGITRYD 180
Query: 218 EIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNL-PQYKIPTRID 263
EID HL ++DGVM+GREAY PFL++ D YY + P P+R+D
Sbjct: 181 EIDAHLRHVDGVMIGREAYHQPFLLAEVDRRYYGDTGPS---PSRLD 224
>gi|347538425|ref|YP_004845849.1| oxygen-independent coproporphyrinogen III oxidase
[Pseudogulbenkiania sp. NH8B]
gi|345641602|dbj|BAK75435.1| oxygen-independent coproporphyrinogen III oxidase
[Pseudogulbenkiania sp. NH8B]
Length = 396
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 209/349 (59%), Gaps = 34/349 (9%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
DE Y+ ALL D+E +LP + R +HTIF+GGGTPSL S +D LL I+ +
Sbjct: 46 GFDEDAYVAALLADLESALPAVWGRPVHTIFMGGGTPSLFSARAMDTLLAGIRARVRLYP 105
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE +KF + GINRLSIGIQSF+ +L LGR HD +A+ A++IA
Sbjct: 106 DAEITMEANPGTFESDKFKGFREAGINRLSIGIQSFDPAHLKALGRIHDGDEARRAVDIA 165
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+F+N NLDL+YALP QTL + + D+ A+ + H+S Y LTIEPNT F +Y P +P
Sbjct: 166 LTHFDNVNLDLMYALPGQTLEQALTDMGTALSFGVTHISAYHLTIEPNTLFARYLPPKLP 225
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
++ +A MQ+ + + L + +YE SA+++ G E +HNLNYW+FGDYLG
Sbjct: 226 DDELSADMQEALEARLAEAGFGHYETSAFARPGRECRHNLNYWQFGDYLGIGAGAHSKIS 285
Query: 872 --NSIAKS----------------------KKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
+SI + ++I + L FEFM+N LRL DGF LF E
Sbjct: 286 AHDSIVREMRYKQPAAYLKAVAEGRPTQSRERIARADLPFEFMMNLLRLTDGFELRLFAE 345
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I+ +L AE GL++R+ +KPT G+ FLNDL +FL
Sbjct: 346 RTGLPLTHIQRELAEAEAQGLIERDLTTLKPTLKGQRFLNDLLTLFLKE 394
>gi|320335164|ref|YP_004171875.1| hypothetical protein [Deinococcus maricopensis DSM 21211]
gi|319756453|gb|ADV68210.1| TIM-barrel protein, yjbN family [Deinococcus maricopensis DSM
21211]
Length = 340
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 186/255 (72%), Gaps = 3/255 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APM++ TDRHCR FHR ITR++ LYTEM TT AIL G++ L F+ +EHP+A Q+G
Sbjct: 12 LSVAPMLDWTDRHCRAFHRLITRHTLLYTEMITTGAILHGDEARHLSFSPQEHPVALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ A+ + +GY E+NLN GCPS+RVQNG FGA LM P +V+ ++AMR +
Sbjct: 72 GSDPVALAECARRAEGYGYAEVNLNVGCPSDRVQNGRFGACLMATPDVVARGVEAMRGAT 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+ +TVKHRIGIDD++SY+ + FV TV+ AGC TFIVHAR A+L L+PK+NR+IP L+
Sbjct: 132 GLPVTVKHRIGIDDLDSYELLTAFVRTVADAGCETFIVHARKAWLSGLSPKENREIPPLR 191
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y V LK DFP+L ++NGG+K+ E + HL +DGVM+GREAY NP+L++ D +
Sbjct: 192 YEVVRQLKMDFPQLTFVLNGGVKSLDEAETHLRSVDGVMIGREAYGNPYLLALADARLFG 251
Query: 252 NLPQYKIPTRIDIIN 266
+ + +PTR +++
Sbjct: 252 D--AHVVPTRREVVE 264
>gi|397686767|ref|YP_006524086.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 10701]
gi|395808323|gb|AFN77728.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 10701]
Length = 336
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/253 (53%), Positives = 178/253 (70%), Gaps = 1/253 (0%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
+ I R+ S+APMM+ TDRHCR F RQ++ ++ LYTEM TT A++ G+ L
Sbjct: 8 LAAIRRPSPSRRFSVAPMMDWTDRHCRYFLRQLSGHALLYTEMVTTGALINGDAVRFLRH 67
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G + P LA A++ + GYDE+NLN GCPS+RVQN GA LM P L
Sbjct: 68 DEAEHPLALQLGGSVPADLAACARLTEAAGYDEVNLNVGCPSDRVQNNLIGACLMAHPAL 127
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC+KAMRD+V+ID+TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L
Sbjct: 128 VADCVKAMRDAVDIDVTVKHRIGINGRDSYAELCDFVGQVQEAGCRSFTVHARIAILEGL 187
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PKQNR++P L+Y+ LK+DFP LEII+NGGIKT +E HL DGVMLGREAY NP
Sbjct: 188 SPKQNREVPPLRYDIAAQLKRDFPHLEIILNGGIKTLEECREHLQTFDGVMLGREAYHNP 247
Query: 240 FLMSNFDLNYYSN 252
+L++ D + +
Sbjct: 248 YLLAQVDQQLFGS 260
>gi|148548779|ref|YP_001268881.1| tRNA-dihydrouridine synthase A [Pseudomonas putida F1]
gi|148512837|gb|ABQ79697.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas putida F1]
Length = 336
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEETGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|397694012|ref|YP_006531893.1| tRNA-dihydrouridine synthase A [Pseudomonas putida DOT-T1E]
gi|397330742|gb|AFO47101.1| tRNA-dihydrouridine synthase A [Pseudomonas putida DOT-T1E]
Length = 339
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 141 AVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|333982800|ref|YP_004512010.1| hypothetical protein [Methylomonas methanica MC09]
gi|333806841|gb|AEF99510.1| TIM-barrel protein, yjbN family [Methylomonas methanica MC09]
Length = 323
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 184/256 (71%), Gaps = 3/256 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ +APM++ TDRHCR F+R ++R++ LYTEM TT AIL GN++ L FN EE P+A Q
Sbjct: 7 RRFCVAPMLDWTDRHCRYFYRLLSRHAVLYTEMVTTGAILQGNQQRHLQFNPEEQPVALQ 66
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P+ LA+ A++ +++GYDE+NLN GCPS+RVQNG FGA LM +P LV+ C+ AMR
Sbjct: 67 LGGSHPQDLARCAELAEQYGYDEVNLNIGCPSDRVQNGRFGACLMAEPELVAACVAAMRQ 126
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVK RIGID+ +SY+ + F+ TV++ GC TFIVHAR A+L L+PKQNR IP
Sbjct: 127 AVSIPVTVKSRIGIDERDSYEELTQFIATVAAGGCDTFIVHARKAWLSGLSPKQNRDIPP 186
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y VY LK DFPEL+IIINGGI + L ++DGVMLGRE Y NP+L+S D
Sbjct: 187 LCYEMVYRLKHDFPELDIIINGGITSLDASLALLKHVDGVMLGREVYHNPYLLSEVDRCL 246
Query: 250 YSNLPQYKIPTRIDII 265
Y + Y TR D+I
Sbjct: 247 YGD--DYPQKTRQDVI 260
>gi|336316388|ref|ZP_08571287.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
gi|335879257|gb|EGM77157.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
Length = 333
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/256 (53%), Positives = 184/256 (71%), Gaps = 2/256 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TD+HCR FHR ++ ++ LYTEM TT AI+ + L FN EEHP+ Q+G
Sbjct: 17 RFSIAPMLDWTDKHCRYFHRLLSEHAVLYTEMVTTGAIIYGQGDYLGFNDEEHPVVVQLG 76
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++ K +A SAK+ Q+ GYD IN+N GCPS+RVQNG FGA LM +P LV+ CI MR V
Sbjct: 77 GSDSKDMAHSAKLCQERGYDAININVGCPSDRVQNGMFGACLMARPELVAACIHEMRAVV 136
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+I +TVK RIGIDD +SY F+ DF+GT++ +GC FIVHAR A+L L+PK+NR+IP L
Sbjct: 137 DIPVTVKSRIGIDDHDSYQFLVDFIGTIAESGCNQFIVHARKAWLSGLSPKENREIPPLD 196
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y VY LKKDFP L+I INGG+KT + HL ++DGVM+GREAY NP +++ D Y+
Sbjct: 197 YERVYQLKKDFPHLDISINGGVKTLADCLTHLQHVDGVMVGREAYSNPLMLAQIDAAIYN 256
Query: 252 NLPQYKIPTRIDIINL 267
N P+ +PT ++ L
Sbjct: 257 N-PR-AVPTPHQVVEL 270
>gi|260599558|ref|YP_003212129.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
gi|260218735|emb|CBA34083.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
Length = 349
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 179/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 27 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQALLYTEMVTTGAIIHGKGDYLAYSDEEHPVA 86
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM
Sbjct: 87 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAM 146
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 147 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 206
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP L+++ D
Sbjct: 207 IPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKAHLAHMDGVMVGREAYQNPGLLASVD 266
>gi|329296553|ref|ZP_08253889.1| TIM-barrel protein, yjbN family [Plautia stali symbiont]
Length = 331
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/250 (54%), Positives = 177/250 (70%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHRQ+ + LYTEM TT AI+ K L ++ E
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRQLGGDTLLYTEMVTTGAIIHGKGDYLAYSEAE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC
Sbjct: 61 HPLALQLGGSDPAALATCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGIDD +SY F+ DFVGTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFVGTVAQQGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+N +IP L Y VY LK+DFP L + INGGIKT E HL ++DGVM+GREAY+NP ++
Sbjct: 181 ENSEIPPLDYPRVYQLKRDFPALTVAINGGIKTLDEAKAHLQHLDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRQLFGR 250
>gi|441506422|ref|ZP_20988393.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
gi|441425888|gb|ELR63379.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
Length = 346
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/249 (53%), Positives = 183/249 (73%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR FHRQ++ + LYTEM TT AI+ K L +N EEHP+
Sbjct: 22 YPSCRFSVAPMLDWTDRHCRYFHRQLSEHVQLYTEMVTTGAIIHGKADYLAYNEEEHPLV 81
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G + P +LA+ AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM + LV+ C+ AM
Sbjct: 82 LQLGGSNPAELAQCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMGEAELVAQCVAAM 141
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRK 186
R+ V+I ++VK RIGID+ +SY F+ DF+GTVS GC F +HAR A+L+ L+PK+NR+
Sbjct: 142 REVVDIPVSVKTRIGIDEQDSYQFLTDFIGTVSEKGGCSDFTIHARKAWLQGLSPKENRE 201
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LKKDF L + INGG+KT +E++ HL ++DGVM+GREAY+NP++M++ D
Sbjct: 202 IPPLDYPRVYQLKKDFAHLTMAINGGVKTMEEVEAHLEHLDGVMVGREAYQNPYMMADLD 261
Query: 247 LNYY-SNLP 254
+ SN P
Sbjct: 262 QRLFGSNKP 270
>gi|387121479|ref|YP_006287362.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756685|ref|ZP_11481125.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416036249|ref|ZP_11573666.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416049171|ref|ZP_11576490.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347991987|gb|EGY33425.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996565|gb|EGY37630.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655707|gb|EGY71147.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875971|gb|AFI87530.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 327
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/248 (54%), Positives = 179/248 (72%), Gaps = 1/248 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM+N T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A
Sbjct: 8 FYRGRFAVAPMLNWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYEQVYQLKRDFPHLLISINGGIKTIDEMQQHLQLVDGVMVGREAYQNPSLLGYIDQ 247
Query: 248 NYY-SNLP 254
+ +N P
Sbjct: 248 ALFNANAP 255
>gi|410645346|ref|ZP_11355812.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
gi|410135118|dbj|GAC04211.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
Length = 345
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/266 (50%), Positives = 192/266 (72%), Gaps = 3/266 (1%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
MN ++ N RKIS+APM++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN
Sbjct: 1 MNTPSAPLN-RKISVAPMLDWTDKHCRYFLRQISKHALLYTEMVTTGAIIFGKGDYLAFN 59
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EHP+A Q+G ++P +A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V
Sbjct: 60 EAEHPVALQLGGSDPADMARCAVLAQERGYDEVNINVGCPSDRVQNGRFGACLMAEPKTV 119
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+DCI AM+ V+I +TVK RIGIDD++ Y + DF+ ++ AGC F VHAR A+LK L+
Sbjct: 120 ADCINAMQKEVDIPVTVKSRIGIDDMDEYKDLTDFIQVIADAGCEIFTVHARKAWLKGLS 179
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR IP L Y+ VY LK++FP L + INGG+KT + LHL+ +DGVM+GRE Y NP+
Sbjct: 180 PKENRDIPPLMYDRVYALKEEFPHLNLSINGGVKTLDDAALHLDKLDGVMIGREVYSNPY 239
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDIIN 266
++++ D +Y + Q +P+R +I++
Sbjct: 240 ILADVDKRFYQD--QTPVPSREEIVH 263
>gi|322834778|ref|YP_004214805.1| yjbN family TIM-barrel protein [Rahnella sp. Y9602]
gi|384259998|ref|YP_005403932.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
gi|321169979|gb|ADW75678.1| TIM-barrel protein, yjbN family [Rahnella sp. Y9602]
gi|380755974|gb|AFE60365.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
Length = 335
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 185/263 (70%), Gaps = 5/263 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ ++ ++ S+APM++ TDRHCR FHR +T + LYTEM TT AI+ K L F EH
Sbjct: 4 TTPFSAQRFSVAPMLDWTDRHCRHFHRLMTGQTLLYTEMVTTGAIIHGKGDYLGFGDAEH 63
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P++ Q+G + P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCI
Sbjct: 64 PVSLQLGGSNPADLAHCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGQASLVADCI 123
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ VS GC TFI+HAR A+L L+PK+
Sbjct: 124 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIRQVSENGGCDTFIIHARKAWLSGLSPKE 183
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIKT +E HL Y+DGVM+GREAY+NP L+
Sbjct: 184 NREIPPLDYPRVYQLKRDFPHLTLAINGGIKTLEEAKTHLQYMDGVMVGREAYQNPGLLL 243
Query: 244 NFDLNYY-SNLPQYKIPTRIDII 265
N D + S+ P + T DII
Sbjct: 244 NVDRELFGSDAP---LKTGPDII 263
>gi|416056193|ref|ZP_11579807.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416068298|ref|ZP_11582733.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444333553|ref|ZP_21149328.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348001196|gb|EGY41950.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002217|gb|EGY42923.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551562|gb|ELT59375.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 327
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/248 (54%), Positives = 179/248 (72%), Gaps = 1/248 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM+N T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A
Sbjct: 8 FYRGRFAVAPMLNWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQLVDGVMVGREAYQNPSLLGYIDQ 247
Query: 248 NYY-SNLP 254
+ +N P
Sbjct: 248 ALFNANAP 255
>gi|334703229|ref|ZP_08519095.1| tRNA-dihydrouridine synthase A [Aeromonas caviae Ae398]
Length = 328
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 213/327 (65%), Gaps = 26/327 (7%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++ SIAPM++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHP+A
Sbjct: 2 QAQRFSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPLAL 61
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA+ A++ ++ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+KAMR
Sbjct: 62 QLGGSNPADLARCARLAEERGYDEVNLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMR 121
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D V+I +TVK RIGID+ +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP
Sbjct: 122 DVVDIPVTVKTRIGIDEQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIP 181
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-L 247
L Y VY +K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L
Sbjct: 182 PLDYPRVYRVKQDYPDLTIAINGGVTSLEQTLEHLQHLDGVMMGREAYQNPYILAQVDNL 241
Query: 248 NYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC----- 302
+ N +P+R +++ + E E N ++ M+++ GL
Sbjct: 242 VFGEN---RAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGA 290
Query: 303 ----MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 291 RAWRRHLSENACKPGADIQVVLDAMAK 317
>gi|145300509|ref|YP_001143350.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853281|gb|ABO91602.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 331
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 209/326 (64%), Gaps = 24/326 (7%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++ SIAPM++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +E P++
Sbjct: 5 QAQRFSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQERPVSL 64
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAMR
Sbjct: 65 QLGGSNPADLAHCAKLARERGYDEINLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMR 124
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+P++NR+IP
Sbjct: 125 DVVDIPVTVKTRIGIDDQDSYEFLQTFIEQVRDAGCDTFIVHARKAWLSGLSPRENREIP 184
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L Y VY +K+D+PEL I +NGG+ + ++ HL +DGVM+GREAY+NP++++ D
Sbjct: 185 PLDYPRVYRVKQDYPELTIALNGGVTSLEQTLEHLQQVDGVMMGREAYQNPYILAQVDSQ 244
Query: 249 YYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------ 302
+ + IP+R +++ + E E N ++ M+++ GL
Sbjct: 245 LFGLASE--IPSRHEVVRMMLPYMEQE--------LAKGNYLSHMTRHMLGLFQNMQGAR 294
Query: 303 ---MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 295 AWRRHLSENACKQGAGIQVVLDAMAK 320
>gi|418362882|ref|ZP_12963500.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|356685888|gb|EHI50507.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 328
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 209/326 (64%), Gaps = 24/326 (7%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++ SIAPM++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +E P++
Sbjct: 2 QAQRFSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQERPVSL 61
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAMR
Sbjct: 62 QLGGSNPADLAHCAKLARERGYDEINLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMR 121
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+P++NR+IP
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQTFIEQVRDAGCDTFIVHARKAWLSGLSPRENREIP 181
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L Y VY +K+D+PEL I +NGG+ + ++ HL +DGVM+GREAY+NP++++ D
Sbjct: 182 PLDYPRVYRVKQDYPELTIALNGGVTSLEQTLEHLQQVDGVMMGREAYQNPYILAQVDSQ 241
Query: 249 YYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------ 302
+ + IP+R +++ + E E N ++ M+++ GL
Sbjct: 242 LFGLASE--IPSRHEVVRMMLPYMEQE--------LAKGNYLSHMTRHMLGLFQNMQGAR 291
Query: 303 ---MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 292 AWRRHLSENACKQGAGIQVVLDAMAK 317
>gi|417957193|ref|ZP_12600119.1| dihydrouridine synthase [Neisseria weaveri ATCC 51223]
gi|343968773|gb|EGV36996.1| dihydrouridine synthase [Neisseria weaveri ATCC 51223]
Length = 336
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/242 (55%), Positives = 180/242 (74%), Gaps = 2/242 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++SIAPM++ TDRH R RQI+R++WLY+EM AI+ G++ L FN E P+A Q
Sbjct: 12 RRLSIAPMLDWTDRHYRHMARQISRHTWLYSEMINAGAIIYGDQDRFLMFNEGEQPVALQ 71
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP LAK+AK +++GY+EINLNCGCPS RVQ G FGA LM + LV+DC+ +M+D
Sbjct: 72 LGGSEPADLAKAAKAGEQYGYNEINLNCGCPSPRVQKGAFGACLMNEVGLVADCLNSMQD 131
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT++ C TFIVHARNA+L L+PK+NR++P
Sbjct: 132 AVRIPVTVKHRIGVDRQTEYQTVADFVGTLAHKTACTTFIVHARNAWLDGLSPKENREVP 191
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY +VY LK++FP LEIIINGG+ T +EI HL ++DGVM+GREAY NP +M +D
Sbjct: 192 PLKYEYVYRLKQEFPNLEIIINGGVTTNEEIAGHLQHVDGVMVGREAYHNPMIMREWDQR 251
Query: 249 YY 250
+Y
Sbjct: 252 FY 253
>gi|365968567|ref|YP_004950128.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365747480|gb|AEW71707.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 331
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 180/244 (73%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ + + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EE
Sbjct: 5 LQTAFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEE 64
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 65 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNASLVADC 124
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK
Sbjct: 125 IKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 184
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L + INGGIK+ +E HL ++DGVM+GREAY+NP ++
Sbjct: 185 ENREIPPLDYPRVYQLKRDFPQLTMSINGGIKSLEEAKTHLEHMDGVMVGREAYQNPGIL 244
Query: 243 SNFD 246
+ D
Sbjct: 245 ATVD 248
>gi|345874819|ref|ZP_08826618.1| dihydrouridine synthase [Neisseria weaveri LMG 5135]
gi|343969924|gb|EGV38127.1| dihydrouridine synthase [Neisseria weaveri LMG 5135]
Length = 336
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 187/258 (72%), Gaps = 3/258 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++SIAPM++ TDRH R RQI+R++WLY+EM AI+ G++ L FN E P+A Q
Sbjct: 12 RRLSIAPMLDWTDRHYRHMARQISRHTWLYSEMINAGAIIYGDQDRFLMFNEGEQPVALQ 71
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP LAK+AK +++GY+EINLNCGCPS RVQ G FGA LM + LV+DC+ +M+D
Sbjct: 72 LGGSEPADLAKAAKAGEQYGYNEINLNCGCPSPRVQKGAFGACLMNEVGLVADCLNSMQD 131
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT++ C TFIVHARNA+L L+PK+NR++P
Sbjct: 132 AVRIPVTVKHRIGVDRQTEYQTVADFVGTLAHKTACTTFIVHARNAWLDGLSPKENREVP 191
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY +VY LK++FP LEIIINGG+ T +EI HL ++DGVM+GREAY NP +M +D
Sbjct: 192 PLKYEYVYRLKQEFPNLEIIINGGVTTNEEIAGHLQHVDGVMVGREAYHNPMIMREWDQR 251
Query: 249 YY-SNLPQYKIPTRIDII 265
+Y S+ P + +D I
Sbjct: 252 FYHSSEPPIEYAELVDRI 269
>gi|345297462|ref|YP_004826820.1| yjbN family TIM-barrel protein [Enterobacter asburiae LF7a]
gi|345091399|gb|AEN63035.1| TIM-barrel protein, yjbN family [Enterobacter asburiae LF7a]
Length = 331
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/240 (56%), Positives = 179/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 YPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 69 LQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGRGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPQLTMSINGGIKSLEEAKAHLGHMDGVMVGREAYQNPGILATVD 248
>gi|261210364|ref|ZP_05924658.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
gi|260840422|gb|EEX66988.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
Length = 335
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 178/243 (73%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+SKY + S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEH
Sbjct: 7 SSKYAPCRFSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q G + PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+
Sbjct: 67 PVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AMR V+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+
Sbjct: 127 AAMRSVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ Y +K+DFP L I +NGG+KT +E LHL ++DGVM+GREAY++P+L++
Sbjct: 187 NREIPPLDYSRAYQIKRDFPHLTIAVNGGVKTLEEAKLHLQHLDGVMIGREAYQSPYLLA 246
Query: 244 NFD 246
D
Sbjct: 247 EVD 249
>gi|383933677|ref|ZP_09987121.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
gi|383705283|dbj|GAB57212.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
Length = 331
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 180/250 (72%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE 62
M N + S+APM++ TD+HCR FHR ++R++ LYTEM TT AI+ L FN +
Sbjct: 1 MRNQVLAAHQFSVAPMLDWTDKHCRYFHRLLSRHAVLYTEMVTTGAIIHGSGDYLAFNEQ 60
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP+ Q+G +EP ++A AK+ ++ GYD +N+N GCPS+RVQNG FGA LM +P V+D
Sbjct: 61 EHPLVLQLGGSEPAEMAHCAKLAEQRGYDAVNINVGCPSDRVQNGMFGACLMAQPARVAD 120
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+KAM+D+V I +TVK RIGIDD + Y F++DFV V++AGC FI+HAR A+LK L+PK
Sbjct: 121 CVKAMQDAVSIPVTVKTRIGIDDSDDYQFLQDFVSMVAAAGCEQFIIHARKAWLKGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y V LK++FP+L I +NGGIKT ++ L Y+DGVM+GREAY NP L+
Sbjct: 181 ENREIPPLNYPRVQQLKQEFPQLNISLNGGIKTLQQAKEQLQYLDGVMVGREAYTNPLLL 240
Query: 243 SNFDLNYYSN 252
S D Y++
Sbjct: 241 SEVDSLIYAD 250
>gi|259909942|ref|YP_002650298.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
gi|224965564|emb|CAX57096.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
Length = 331
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 178/244 (72%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ K + SIAPM++ TDRHCR FHRQ+T+ + LY+EM TT AI+ K L F++EE
Sbjct: 1 MTEKLPAHRFSIAPMLDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGDYLAFSSEE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 HPVALQLGGSDPAALAHCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADG 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
IKAMRD V + +TVK RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGG+K+ E +HL Y+DGVM+GREAY+NP L+
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQYLDGVMMGREAYQNPGLL 240
Query: 243 SNFD 246
+ D
Sbjct: 241 AQVD 244
>gi|423201194|ref|ZP_17187774.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
gi|404617766|gb|EKB14700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
Length = 328
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/325 (45%), Positives = 213/325 (65%), Gaps = 26/325 (8%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+
Sbjct: 4 QRFSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD
Sbjct: 64 GGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDV 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VDIPVTVKTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNY 249
Y VY +K+D+P+L I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L +
Sbjct: 184 DYPRVYRVKQDYPDLTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVF 243
Query: 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------- 302
N +P+R +++ + E E N ++ M+++ GL
Sbjct: 244 GQN---NAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARA 292
Query: 303 --MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 293 WRRHLSENACKPGAGIQVVLDAMAK 317
>gi|339477902|ref|YP_004706722.1| putative tRNA-dihydrouridine synthase A [Candidatus Moranella
endobia PCIT]
gi|338172453|gb|AEI74854.1| putative tRNA-dihydrouridine synthase A [Candidatus Moranella
endobia PCIT]
Length = 344
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 181/256 (70%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM+NLTDRHCR F RQ++R + LYTEM TT A+L K L FN EEHP+A Q+G
Sbjct: 28 RFSVAPMLNLTDRHCRFFLRQLSRRALLYTEMVTTGALLHGKGDDLIFNEEEHPLALQLG 87
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
NEPK+LA+ AKI Q GYDE+NLN GCPS RVQNG FGA LM + LV DCI AMR++V
Sbjct: 88 GNEPKELARCAKIAQHMGYDEVNLNVGCPSARVQNGRFGACLMAETALVGDCIAAMREAV 147
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ ITVK RIGID +SY+F+ +F+ T ++ GC+ FI+HAR A+L L+PK NRKIP L
Sbjct: 148 SLPITVKTRIGIDMQDSYEFLYEFIDTCATKGGCQKFIIHARKAWLNGLSPKDNRKIPPL 207
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK DFP L+I++NGGI T + HL +DGVM+GREAY NP L+ D +
Sbjct: 208 DYERVYRLKHDFPLLQIVVNGGITTLHDAITHLQQLDGVMIGREAYYNPGLLMRVDSELF 267
Query: 251 SNLPQYKIPTRIDIIN 266
S +PT+ +IN
Sbjct: 268 SAFD--PLPTQAAVIN 281
>gi|388598475|ref|ZP_10156871.1| tRNA-dihydrouridine synthase A [Vibrio campbellii DS40M4]
Length = 326
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 179/245 (73%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 66 GSNPADLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSERGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL Y+DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQYLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNTP 250
>gi|323492300|ref|ZP_08097456.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
gi|323313464|gb|EGA66572.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
Length = 333
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/243 (56%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
SKY + SIAPM++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEH
Sbjct: 6 TSKYAANRFSIAPMLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGDFLAYNQEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+
Sbjct: 66 PVALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMGEPQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AMRD V+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+
Sbjct: 126 AAMRDVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y Y LKKDF L I +NGG+KT +E HL ++DGVM+GREAY+NP++++
Sbjct: 186 NREIPPLDYPRAYQLKKDFSHLVIAVNGGVKTLQETKEHLQHLDGVMVGREAYQNPYILA 245
Query: 244 NFD 246
D
Sbjct: 246 EVD 248
>gi|453063437|gb|EMF04416.1| tRNA-dihydrouridine synthase A [Serratia marcescens VGH107]
Length = 336
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/260 (52%), Positives = 181/260 (69%), Gaps = 3/260 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 YAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 70 LQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY F+ DF+ TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYAFLCDFIQTVAGRGECDMFTIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y Y LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 190 VPPLDYPRAYQLKRDFPALTIAINGGVKTLEEAQQHLQHLDGVMMGREAYQNPGILARVD 249
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+ Q +P + I+
Sbjct: 250 SELFGA--QTAVPDSVAIVE 267
>gi|300115485|ref|YP_003762060.1| TIM-barrel protein [Nitrosococcus watsonii C-113]
gi|299541422|gb|ADJ29739.1| TIM-barrel protein, yjbN family [Nitrosococcus watsonii C-113]
Length = 325
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 190/256 (74%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
K+SIAPMM+ TDRHCR F R I+ ++ LYTEM TT A++ G++ L ++ EHP+A Q+
Sbjct: 9 KVSIAPMMDWTDRHCRYFLRLISHHALLYTEMVTTGALVHGDRIRFLAHHSSEHPLALQL 68
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P++LA A+I + +G+DE+NLN GCPSNRVQ+G FGA LM +P LV++C+ AM +
Sbjct: 69 GGSHPEELALCAQIAEDYGFDEVNLNVGCPSNRVQSGRFGACLMAEPQLVAECVAAMAQA 128
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGID+ +SY+ + F+ TV+ AGCRTFI+HAR A+L+ L+PK+NR+ P L
Sbjct: 129 TQIPVTVKTRIGIDEQDSYEALSSFISTVAQAGCRTFIIHARKAWLQGLSPKENREKPPL 188
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ V +K+DFP+LE++INGGI T KE+ HL +DGVM+GR AY NP+L++ D +Y
Sbjct: 189 RYDVVRAIKRDFPQLEVMINGGITTLKEVSEHLELLDGVMIGRAAYHNPYLLAPVDQRFY 248
Query: 251 SNLPQYKIPTRIDIIN 266
+ +PTR +II
Sbjct: 249 GDF--RALPTRHEIIE 262
>gi|423211040|ref|ZP_17197593.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
gi|404614042|gb|EKB11046.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
Length = 328
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/325 (45%), Positives = 213/325 (65%), Gaps = 26/325 (8%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+
Sbjct: 4 QRFSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQL 63
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD
Sbjct: 64 GGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDV 123
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L
Sbjct: 124 VDIPVTVKTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNY 249
Y VY +K+D+P+L I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L +
Sbjct: 184 DYPRVYRVKQDYPKLTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVF 243
Query: 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC------- 302
N +P+R +++ + E E N ++ M+++ GL
Sbjct: 244 GQN---NAVPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARA 292
Query: 303 --MTLTEKHC-----IQLKLDMMTK 320
L+E C IQ+ LD M K
Sbjct: 293 WRRHLSENACKPGAGIQVVLDAMAK 317
>gi|253689857|ref|YP_003019047.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756435|gb|ACT14511.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 340
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/241 (56%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F RQ++ + LYTEM TT AIL K L ++ EEHP+A Q+G
Sbjct: 23 RFSIAPMLDWTDRHCRYFLRQLSSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEASLVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYAFLCDFIQTVAELGECETFIVHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|448244174|ref|YP_007408227.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
gi|445214538|gb|AGE20208.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
Length = 336
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/260 (53%), Positives = 181/260 (69%), Gaps = 3/260 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 YAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 70 LQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY F+ DF+ TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYAFLCDFIQTVAGRGECDMFTIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 190 VPPLDYPRVYQLKRDFPALTIAINGGVKTLGEAQQHLQHLDGVMMGREAYQNPGILARVD 249
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+ Q +P + I+
Sbjct: 250 SELFGV--QTAVPDSVAIVE 267
>gi|300691712|ref|YP_003752707.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum PSI07]
gi|299078772|emb|CBJ51432.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum PSI07]
Length = 302
Score = 296 bits (758), Expect = 3e-77, Method: Composition-based stats.
Identities = 134/223 (60%), Positives = 173/223 (77%), Gaps = 3/223 (1%)
Query: 43 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 101
M TT A+L G+ LDF+ EHP+A Q+G +EP LA+SA++ ++WGY EINLNCGCPS
Sbjct: 1 MVTTGALLHGDVPRHLDFDEMEHPVALQLGGSEPGDLAQSARLGERWGYREINLNCGCPS 60
Query: 102 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 161
RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIGID I +YDFVRDFVGT++
Sbjct: 61 ERVQRGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE 120
Query: 162 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221
AGC TFIVHARNA LK L+PK+NR+IP L+Y VY LK+DFP+LEI++NGG++ ++ID
Sbjct: 121 AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGVQALEQIDA 180
Query: 222 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDI 264
HL ++DGVM+GREAY +P LM++FD YY PTR ++
Sbjct: 181 HLAHVDGVMIGREAYHHPHLMASFDARYYG--ADTVAPTRAEV 221
>gi|296136585|ref|YP_003643827.1| yjbN family TIM-barrel protein [Thiomonas intermedia K12]
gi|295796707|gb|ADG31497.1| TIM-barrel protein, yjbN family [Thiomonas intermedia K12]
Length = 349
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+SIAPM++ TDRHCR FHR IT+ + LYTEM TT A+L G+ LD+++ EHP+A Q+G
Sbjct: 5 LSIAPMLDWTDRHCRYFHRLITQRALLYTEMVTTGALLYGDVARHLDYSSHEHPVALQLG 64
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA+ AK+ +WGYDEINLNCGCPS RVQ G FGA LM +P V D + AM ++V
Sbjct: 65 GSEPVDLARCAKLALEWGYDEINLNCGCPSPRVQRGAFGACLMAEPSRVRDSVAAMVEAV 124
Query: 132 E--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
I +TVKHRIG+D +SY FVRDFVGTVS GC TFIVHAR+A+L L+PK+NR IP
Sbjct: 125 SGTIPVTVKHRIGVDHEDSYGFVRDFVGTVSQGGCETFIVHARSAWLDGLSPKENRDIPP 184
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+ F+ L++DFP L ++NGGIKT+++I L + GVM+GR AY++P+ +S +D +
Sbjct: 185 LRPEFILQLRRDFPALAFVLNGGIKTEQQIREWLPQVSGVMVGRAAYQDPWSLSTWDREF 244
Query: 250 YSN 252
+
Sbjct: 245 LGS 247
>gi|444918632|ref|ZP_21238696.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
gi|444709577|gb|ELW50585.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
Length = 358
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 133/250 (53%), Positives = 181/250 (72%), Gaps = 3/250 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRH R F R I++ + LYTEM TT AIL G+K LDF+ EEHP+A Q+G ++P
Sbjct: 1 MMDWTDRHDRYFLRLISKRTRLYTEMVTTGAILYGDKPRHLDFSQEEHPLALQLGGSDPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
+LA+ +I ++WGYDE+NLN GCPS+RVQNG FGA LM KP LV+ C++AMR + + +T
Sbjct: 61 QLAECVRIAEQWGYDEVNLNVGCPSDRVQNGMFGACLMAKPDLVARCVEAMRGATRLPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+GIDD++SY+ + FV TVS AGC TFIVHAR AFL+ L+PK+NR+IP L+Y +V
Sbjct: 121 VKHRLGIDDLDSYELLTHFVRTVSGAGCDTFIVHARKAFLQGLSPKENREIPPLRYEWVR 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK DFP L + +NGG+K+ E HL + DGVM+GREAY+NP++++ D +
Sbjct: 181 QLKTDFPHLTLSLNGGVKSLAEARAHLEWADGVMIGREAYQNPYMLALADSVIFGE--TA 238
Query: 257 KIPTRIDIIN 266
PTR ++
Sbjct: 239 PAPTRRQVVE 248
>gi|344171567|emb|CCA84183.1| tRNA-dihydrouridine synthase A [Ralstonia syzygii R24]
Length = 302
Score = 296 bits (758), Expect = 4e-77, Method: Composition-based stats.
Identities = 134/223 (60%), Positives = 172/223 (77%), Gaps = 3/223 (1%)
Query: 43 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 101
M TT A+L G LDF+ EHP+A Q+G +EP LA+S ++ ++WGY EINLNCGCPS
Sbjct: 1 MVTTGALLHGEVPRHLDFDEMEHPVALQLGGSEPGDLAQSVRLGERWGYREINLNCGCPS 60
Query: 102 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 161
RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIGID I +YDFVRDFVGT++
Sbjct: 61 ERVQRGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE 120
Query: 162 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221
AGC TFIVHARNA LK L+PK+NR+IP L+Y VY LK+DFP+LEI++NGG++T ++ID
Sbjct: 121 AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGVQTLEQIDA 180
Query: 222 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDI 264
HL ++DGVM+GREAY +P LM++FD YY PTR ++
Sbjct: 181 HLTHLDGVMIGREAYHHPHLMASFDARYYG--ADTVAPTRAEV 221
>gi|254482016|ref|ZP_05095258.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
gi|214037706|gb|EEB78371.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
Length = 315
Score = 296 bits (758), Expect = 4e-77, Method: Composition-based stats.
Identities = 130/230 (56%), Positives = 182/230 (79%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ +D HCR F R +++ + LYTEM TT A++ G+++ L FNAEEHP+A Q+G + P
Sbjct: 1 MMDWSDHHCRYFWRLLSKQALLYTEMVTTGALIHGDRERFLRFNAEEHPVALQLGGSNPN 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+ A+ Q+W YDE+NLNCGCPS+RVQ+G FGA LM +P LV+D +KAMRD+ + +T
Sbjct: 61 DLAQCARWAQEWHYDEVNLNCGCPSDRVQSGMFGACLMAQPELVADGVKAMRDATLLPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGIDD++SY+ + DFVG V+ AGC FIVHAR A+LK L+PK+NR+IP L Y++VY
Sbjct: 121 VKHRIGIDDMDSYEQMLDFVGPVADAGCEVFIVHARKAWLKGLSPKENREIPPLVYDWVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+D P+LEI+INGGI+T ++ + HL ++DGVM+GREAY+NP++++ D
Sbjct: 181 RLKRDLPDLEIVINGGIQTIEDCEDHLAHVDGVMIGREAYQNPWMLAEVD 230
>gi|421727638|ref|ZP_16166798.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
gi|410371607|gb|EKP26328.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
Length = 331
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 137/242 (56%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP
Sbjct: 7 TAFAAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHP 66
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIK
Sbjct: 67 VALQLGGSDPAALAHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIK 126
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+N
Sbjct: 127 AMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKEN 186
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y Y LK+DFP L + INGGIK+ +E LHL ++DGVM+GREAY+NP +++
Sbjct: 187 REIPPLDYPLFYQLKRDFPHLTMAINGGIKSLEEAKLHLEHMDGVMVGREAYQNPGILAA 246
Query: 245 FD 246
D
Sbjct: 247 VD 248
>gi|284006504|emb|CBA71765.1| tRNA-dihydrouridine synthase A [Arsenophonus nasoniae]
Length = 344
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 180/245 (73%), Gaps = 1/245 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR FHR +T+ + LYTEM TT A++ K L ++ EEHP+A
Sbjct: 24 NHHRFSVAPMLDWTDRHCRYFHRLLTKEALLYTEMVTTGALIYGKGDYLAYSEEEHPVAL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G NEP LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM+
Sbjct: 84 QLGGNEPTALAYCAKMAQQSGYDEINLNIGCPSDRVQNGRFGACLMREGGLVADCIKAMQ 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
D+ I ITVK RIG+DD +SY F+ DF+ V+ + CR FI+HAR A+L L+PKQNR+I
Sbjct: 144 DAATIPITVKTRIGVDDDDSYAFLTDFIDKIVTDSQCRLFIIHARKAWLSGLSPKQNREI 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LKKDFP+L I++NGGIK E HL+++DGVM+GREAY+NP L++ D+
Sbjct: 204 PPLDYLRVYQLKKDFPQLTIVVNGGIKNIDEAKQHLHHLDGVMIGREAYQNPALLTQVDV 263
Query: 248 NYYSN 252
++
Sbjct: 264 EFFDQ 268
>gi|395798542|ref|ZP_10477826.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Ag1]
gi|395337277|gb|EJF69134.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Ag1]
Length = 331
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 178/253 (70%), Gaps = 1/253 (0%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
+N +K R+ S+APMM+ TDRHCR F R +++ S LYTEM TT AIL G+ + L
Sbjct: 3 VNTATTKILSRRFSVAPMMDWTDRHCRFFLRLLSKNSLLYTEMVTTGAILHGDHERFLRH 62
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
N EHP+A Q+G + P LA A++ Q GYDE+NLN GCPS+RVQN GAILM P L
Sbjct: 63 NEAEHPLALQLGGSVPADLAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGAILMAHPAL 122
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC+KAM+D+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L
Sbjct: 123 VADCVKAMQDAVSIPVTVKHRIGINGRDSYAELCDFVGQVKDAGCTSFTVHARIAILEGL 182
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR IP L+Y+ LK+DFPELEII+NGGIKT ++ HL DGVMLGREAY NP
Sbjct: 183 SPKENRDIPPLRYDVAAQLKQDFPELEIILNGGIKTLEQCQEHLQTFDGVMLGREAYHNP 242
Query: 240 FLMSNFDLNYYSN 252
+L++ D + +
Sbjct: 243 YLLAEVDQQLFGS 255
>gi|190149417|ref|YP_001967942.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262734|ref|ZP_07544361.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914548|gb|ACE60800.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871879|gb|EFN03596.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 329
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 183/245 (74%), Gaps = 1/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N++ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++
Sbjct: 3 NLMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDP 62
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 63 SENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 122
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 123 DCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSP 181
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
KQNR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L
Sbjct: 182 KQNREIPPLDYECVYQLKRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSL 241
Query: 242 MSNFD 246
+ D
Sbjct: 242 LGEID 246
>gi|343518517|ref|ZP_08755507.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
gi|343393432|gb|EGV05987.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
Length = 328
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 174/239 (72%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + + S+APM++ T RHCR FHRQ TR++ LYTEM T AI+ L F+ E+P+A
Sbjct: 8 YYRGRFSVAPMLDWTTRHCRYFHRQFTRHALLYTEMVTAPAIIHATYDHLAFDCAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++LA AK+ GY EINLN GCPS+RVQNG FGA LM K LV C++AM
Sbjct: 68 LQLGGSDPQQLAHCAKLAATRGYQEINLNVGCPSDRVQNGMFGACLMAKADLVGACVQAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V+I +TVK RIGID+++SY+F+ DF+ + AGCR FIVHAR A+L L+PK+NR+I
Sbjct: 128 QAEVDIPVTVKTRIGIDELDSYEFLTDFIARIQQAGCREFIVHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK DFPEL+I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYRLKADFPELKIAINGGIKTLEEMQTHLQFVDGVMVGREAYQNPSLLGGVD 246
>gi|312796563|ref|YP_004029485.1| NIFR3-like protein [Burkholderia rhizoxinica HKI 454]
gi|312168338|emb|CBW75341.1| NIFR3-like protein [Burkholderia rhizoxinica HKI 454]
Length = 233
Score = 296 bits (757), Expect = 5e-77, Method: Composition-based stats.
Identities = 131/212 (61%), Positives = 166/212 (78%), Gaps = 1/212 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPI 66
+ R+I +APMM+ TDRHCR FHRQ++R+ +LYTEM TT A+L G+ L F +E PI
Sbjct: 20 HRARRICVAPMMDWTDRHCRYFHRQLSRHVYLYTEMVTTGALLFGDVARHLSFTPQEAPI 79
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G +EP +LA+ AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM + LV+DC+KA
Sbjct: 80 ALQLGGSEPDELARCAKLSEQWGYDEVNLNCGCPSERVQRGAFGACLMKEATLVADCVKA 139
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
M D+V + +TVKHRIG+D I+ Y FVRDFVGTV+ GCR FIVHARNA LK L+PK+NR+
Sbjct: 140 MCDAVAVPVTVKHRIGVDAIDDYGFVRDFVGTVAQGGCRVFIVHARNAILKGLSPKENRE 199
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKE 218
IP LKY++ Y LK+DFPE EI+INGGIKT E
Sbjct: 200 IPPLKYDYAYRLKRDFPEFEIVINGGIKTLDE 231
>gi|410632529|ref|ZP_11343187.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
gi|410147955|dbj|GAC20054.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
Length = 337
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 187/255 (73%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R IS+APM++ TD+HCR F R+I++++ LYTEM TT AI+ K L +N EEHP+A Q+
Sbjct: 7 RTISVAPMLDWTDKHCRYFLRKISQHALLYTEMVTTGAIIFGKGDYLAYNQEEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +A+ A QK+GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI +M+
Sbjct: 67 GGSDPTDMARCAGEAQKYGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAACISSMQAE 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD++ Y+ + F+ V+++GC TFIVHAR A+LK L+PKQNR +P L
Sbjct: 127 VDIPVTVKSRIGIDDMDEYEDLTRFIDVVAASGCDTFIVHARKAWLKGLSPKQNRDVPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y+ VY LK+ FP+L I +NGG+KT ++ LHLNY+DGVM+GRE Y NP++++ D +Y
Sbjct: 187 MYDRVYQLKQQFPDLHISLNGGVKTLDDVQLHLNYLDGVMIGREVYSNPYILAEVDNRFY 246
Query: 251 SNLPQYKIPTRIDII 265
+ I TR +++
Sbjct: 247 QD--NAVIKTRAEVV 259
>gi|261866807|ref|YP_003254729.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|416106965|ref|ZP_11590157.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444347209|ref|ZP_21155154.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412139|gb|ACX81510.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348005862|gb|EGY46331.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443540777|gb|ELT51304.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 327
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 135/248 (54%), Positives = 179/248 (72%), Gaps = 1/248 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A
Sbjct: 8 FYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQ 247
Query: 248 NYY-SNLP 254
+ +N P
Sbjct: 248 ALFNANAP 255
>gi|423016782|ref|ZP_17007503.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans AXX-A]
gi|338780210|gb|EGP44625.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans AXX-A]
Length = 338
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 180/256 (70%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + + LYTEM TT A+L GN LDF+ EHP+A Q+
Sbjct: 7 RLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLYGNVARHLDFDEAEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA+SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+
Sbjct: 67 GGSEPDALAQSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPDLVADCIKAMQDA 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVKHR+G+D SY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L
Sbjct: 127 VDIPVTVKHRLGLDYEESYAFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ V LK+DFP+ ++NGG+ ++ DGVMLGR A+ P ++S L +
Sbjct: 187 RYDVVRQLKQDFPDCVFVLNGGLADAEQSVRAAADFDGVMLGRAAWHTPRVLSEVSLQLW 246
Query: 251 SNLPQYKIPTRIDIIN 266
P ++P+ +++
Sbjct: 247 ---PSVRLPSDAQVVD 259
>gi|119476488|ref|ZP_01616839.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
gi|119450352|gb|EAW31587.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
Length = 341
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 175/247 (70%), Gaps = 6/247 (2%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
MN IN R+ SIAPMM +DRHCRMF RQ+T+++ +YTEM TT AIL L +
Sbjct: 1 MNKIN-----RRFSIAPMMAWSDRHCRMFWRQLTQHAVMYTEMVTTGAILHAGADRFLTY 55
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
N EHP+A Q+G + P LA KI +GYDE+NLNCGCPS+RVQNG FGA LM P
Sbjct: 56 NTGEHPLALQLGGSNPDDLASCTKIAADFGYDEVNLNCGCPSDRVQNGMFGACLMAHPQR 115
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DCI AM+D+ + ITVKHRIGID++ SYD + +FV ++ GC TFIVHAR A+L+ L
Sbjct: 116 VADCISAMQDASSLPITVKHRIGIDEMESYDEMLEFVKPIADTGCSTFIVHARKAWLQGL 175
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PKQNR IP L Y+ V+ LK+DFP L +IINGGI + + HL +DGVMLGR AY+NP
Sbjct: 176 SPKQNRDIPPLHYDMVHQLKQDFPSLNVIINGGITSIEHCVSHLQLVDGVMLGRAAYQNP 235
Query: 240 FLMSNFD 246
+L++ D
Sbjct: 236 YLLAEVD 242
>gi|365966626|ref|YP_004948188.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416089350|ref|ZP_11587907.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349254|ref|ZP_21156747.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348009398|gb|EGY49552.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365745539|gb|AEW76444.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443545071|gb|ELT54935.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 327
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 135/248 (54%), Positives = 179/248 (72%), Gaps = 1/248 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A
Sbjct: 8 FYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQ 247
Query: 248 NYY-SNLP 254
+ +N P
Sbjct: 248 ALFNANAP 255
>gi|30248297|ref|NP_840367.1| coproporphyrinogen III oxidase [Nitrosomonas europaea ATCC 19718]
gi|30138183|emb|CAD84189.1| Coproporphyrinogen III oxidase and related FeS oxidoreductases
[Nitrosomonas europaea ATCC 19718]
Length = 399
Score = 296 bits (757), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 218/372 (58%), Gaps = 43/372 (11%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + AI S G++ E +Y+ AL D+EL+LP+I R + ++F GGGTPSL S
Sbjct: 32 KCPYCDFNSHAI---NSGGDLPESEYVTALKRDLELALPLIWGRPVTSVFFGGGTPSLFS 88
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
T +D +L +++ LL + ITLEANP T E +KF + GINRLSIGIQSFN+++L
Sbjct: 89 ATAIDAILSHVRMLLPLAPGVEITLEANPGTLEAQKFTDFHSAGINRLSIGIQSFNSRHL 148
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR HD +A A E+A Q+F+N NLDL+YALP QT E + D+ A H+S Y
Sbjct: 149 QALGRIHDGAEALRAAELALQHFSNVNLDLMYALPGQTRDEALQDIETACNRGVAHISAY 208
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
LTIEPNT F++YPP +P D +A MQ I +L Y++YE SA+++ G HN+N
Sbjct: 209 HLTIEPNTPFYRYPP-QLPDEDTSADMQVMIEHILAERGYRHYETSAFAQPGKPCLHNMN 267
Query: 863 YWKFGDYLG---------------------------------------NSIAKSKKIEKK 883
YW++GDYLG N +A +++ +
Sbjct: 268 YWQYGDYLGIGAGAHSKISFRDRIIRQMRHKHPRQYLEQAMAGNACLENLLATEQEVGPQ 327
Query: 884 CLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 943
IFEFM+NALRL +GF P LF RTG+ I I+ L AE+ GL++ + I+PT GR
Sbjct: 328 DRIFEFMMNALRLTEGFDPGLFHTRTGLTIASIQKSLAEAEQRGLIEWQHDCIRPTPEGR 387
Query: 944 YFLNDLQQIFLN 955
FLNDL +IFL+
Sbjct: 388 RFLNDLLEIFLS 399
>gi|317493445|ref|ZP_07951866.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918388|gb|EFV39726.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 337
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 134/259 (51%), Positives = 189/259 (72%), Gaps = 3/259 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+++ + S+APM++ TDRHCR FHR+++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 14 FSQSRFSVAPMLDWTDRHCRYFHRKLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLA 73
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA A++ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAM
Sbjct: 74 LQLGGSDPEALAHCARLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAM 133
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ VS G C +F VHAR A+L L+PK+NR+
Sbjct: 134 RDVVSIPVTVKTRIGIDDQDSYEFLCDFIDIVSGKGECNSFTVHARKAWLSGLSPKENRE 193
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L I INGG+KT +E +HL ++DGVM+GREAY++P ++++ D
Sbjct: 194 IPPLDYERVYQLKRDFPHLNIAINGGVKTLEEAKIHLQHLDGVMMGREAYQSPSILAHVD 253
Query: 247 LNYYSNLPQYKIPTRIDII 265
+ + +P ID++
Sbjct: 254 RELFDSTA--DVPNSIDVV 270
>gi|401761830|ref|YP_006576837.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173364|gb|AFP68213.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 331
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 178/243 (73%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAFPAHRFSIAPMLDWTDRHCRFFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCI 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLEHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 TVD 248
>gi|261250374|ref|ZP_05942949.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953731|ref|ZP_12596774.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938943|gb|EEX94930.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816847|gb|EGU51740.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 333
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
SK+ + SIAPM++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEH
Sbjct: 6 TSKFAANRFSIAPMLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGDFLAYNQEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + PK LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+
Sbjct: 66 PVALQLGGSNPKDLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMGEPQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AMRD V++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+
Sbjct: 126 AAMRDVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y Y LKKDF L I +NGG+KT E HL ++DGVM+GREAY+NP++++
Sbjct: 186 NREIPPLDYPRAYQLKKDFSHLAIAVNGGVKTLAETKEHLQHLDGVMVGREAYQNPYILA 245
Query: 244 NFD 246
D
Sbjct: 246 EVD 248
>gi|307249353|ref|ZP_07531347.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858647|gb|EFM90709.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 329
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 183/245 (74%), Gaps = 1/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N++ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++
Sbjct: 3 NLMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDP 62
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 63 SENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 122
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 123 DCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NNFIVHARKAWLSGLSP 181
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
KQNR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L
Sbjct: 182 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTVEEIKRHLAFVDGVMVGREAYQNPSL 241
Query: 242 MSNFD 246
+ D
Sbjct: 242 LGEID 246
>gi|383816678|ref|ZP_09972071.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
gi|383294485|gb|EIC82826.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
Length = 351
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 182/249 (73%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ Y+ ++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L F ++EH
Sbjct: 20 SAPYSAQRFSIAPMLDWTDRHCRHFHRLMSREALLYTEMVTTGAIIHGKGDYLAFGSQEH 79
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P+ LA A++ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+D I
Sbjct: 80 PVALQLGGSNPQDLATCARLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQAALVADGI 139
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DFV VS GC TFI+HAR A+L L+PK+
Sbjct: 140 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFVQQVSERGGCDTFIIHARKAWLSGLSPKE 199
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR++P L Y VY LK+DFP L I INGGIK+ ++ HL ++DGVM+GREAY+NP ++
Sbjct: 200 NREVPPLDYPRVYQLKRDFPHLTIAINGGIKSLEDAKQHLQHMDGVMIGREAYQNPSMLL 259
Query: 244 NFDLNYYSN 252
+ D + +
Sbjct: 260 DVDRELFGS 268
>gi|429101989|ref|ZP_19163963.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
gi|426288638|emb|CCJ90076.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
Length = 331
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 178/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSDEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP L+++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKAHLAHMDGVMVGREAYQNPGLLASVD 248
>gi|28899501|ref|NP_799106.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|260879420|ref|ZP_05891775.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|260894695|ref|ZP_05903191.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|260902033|ref|ZP_05910428.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|38604768|sp|Q87L85.1|DUSA_VIBPA RecName: Full=tRNA-dihydrouridine synthase A
gi|28807737|dbj|BAC60990.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087465|gb|EFO37160.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|308089701|gb|EFO39396.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|308109416|gb|EFO46956.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
Length = 326
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 182/245 (74%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LAK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V
Sbjct: 66 GSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNAP 250
>gi|153839570|ref|ZP_01992237.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
gi|149746903|gb|EDM57891.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
Length = 326
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 182/245 (74%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LAK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V
Sbjct: 66 GSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNAP 250
>gi|261346564|ref|ZP_05974208.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
gi|282565268|gb|EFB70803.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
Length = 341
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 179/239 (74%), Gaps = 1/239 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP++
Sbjct: 20 NLNRFSVAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIFGKGDYLAYSEEEHPVSL 79
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMR
Sbjct: 80 QLGGSDPAALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMR 139
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKI 187
D V I +TVK RIGID+ +SY+F+ DF+ TVS+ G C TF++HAR A+L L+PK+NR+I
Sbjct: 140 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDTVSTKGDCDTFVIHARKAWLSGLSPKENREI 199
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGG+KT +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 200 PPLDYPRVYQLKRDFPHLTMAINGGVKTLEEAKEHLKYLDGVMMGREAYQNPSILTAVD 258
>gi|358639431|dbj|BAL26728.1| coproporphyrinogen III oxidase [Azoarcus sp. KH32C]
Length = 408
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 210/350 (60%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E Y++ALL D+E +LP + R++H+IFIGGGTPSLIS GLD LL I+ LL+
Sbjct: 60 GEIPEAAYIDALLADLESALPQVWGRRVHSIFIGGGTPSLISSEGLDRLLTGIRMLLMLD 119
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
ITLEANP T E ++F Y G+NRLS+GIQSF+++ L LGR H +A+ AI+
Sbjct: 120 PMAEITLEANPGTVEAQRFRDYRAAGVNRLSLGIQSFDDRQLERLGRIHGGDEARRAIDT 179
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A +F NLDL+YALP QTL+E + DL + + HLS Y LT+EPNT F PP +
Sbjct: 180 ALAHFERVNLDLMYALPEQTLAEALADLETGLAFGVTHLSCYHLTLEPNTPFAHSPP-PL 238
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--------- 871
P +D +A MQD I + L + +YE SA++K G + +HNLNYW FGDYLG
Sbjct: 239 PDDDLSADMQDAIETRLAEAGFLHYETSAFAKPGQQCRHNLNYWTFGDYLGIGAGAHGKL 298
Query: 872 -------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
+ + + +++ L FEFM+NALRL GF LF
Sbjct: 299 SSHEGIVREMRHKHPSHYLEGAARRDFVQERREVGVAELPFEFMMNALRLTGGFPRRLFA 358
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+ IE++L A + GL++ + ++I+PT GR+FLNDL +FL +
Sbjct: 359 ERTGLPFAAIEAELAEARRRGLVEIDAEDIRPTEQGRHFLNDLLTMFLRD 408
>gi|332304623|ref|YP_004432474.1| yjbN family TIM-barrel protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332171952|gb|AEE21206.1| TIM-barrel protein, yjbN family [Glaciecola sp. 4H-3-7+YE-5]
Length = 345
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 191/266 (71%), Gaps = 3/266 (1%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
MN ++ N R IS+APM++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN
Sbjct: 1 MNTPSAPLN-RTISVAPMLDWTDKHCRYFLRQISKHALLYTEMVTTGAIIFGKGDYLAFN 59
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EHP+A Q+G ++P +A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V
Sbjct: 60 EAEHPVALQLGGSDPADMARCAVLAQERGYDEVNINVGCPSDRVQNGRFGACLMAEPKTV 119
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+DCI AM+ V+I +TVK RIGIDD++ Y + DF+ ++ AGC F VHAR A+LK L+
Sbjct: 120 ADCINAMQKEVDIPVTVKSRIGIDDMDEYKDLTDFIQVIADAGCEIFTVHARKAWLKGLS 179
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR IP L Y+ VY LK++FP L + INGG+KT + LHL+ +DGVM+GRE Y NP+
Sbjct: 180 PKENRDIPPLMYDRVYALKEEFPHLNLSINGGVKTLDDAALHLDKLDGVMIGREVYSNPY 239
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDIIN 266
++++ D +Y + Q +P+R +I++
Sbjct: 240 ILADVDKRFYQD--QTPVPSREEIVH 263
>gi|307256171|ref|ZP_07537958.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865352|gb|EFM97248.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 334
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 183/245 (74%), Gaps = 1/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N++ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++
Sbjct: 8 NLMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDP 67
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 68 SENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 127
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 128 DCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSP 186
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
KQNR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L
Sbjct: 187 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKQHLAFVDGVMVGREAYQNPSL 246
Query: 242 MSNFD 246
+ D
Sbjct: 247 LGEID 251
>gi|410611553|ref|ZP_11322651.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
gi|410168971|dbj|GAC36540.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
Length = 338
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 178/242 (73%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R IS+APM++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN EEHP+A Q+
Sbjct: 8 RTISVAPMLDWTDKHCRYFLRQISQHALLYTEMVTTGAIIFGKGDYLGFNQEEHPVALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P +A+ A QK+GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI M+
Sbjct: 68 GGSNPTDMARCASEAQKYGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAACINTMQAE 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD++ Y+ + F+ V+++GC TFIVHAR A+LK L+PKQNR +P L
Sbjct: 128 VDIPVTVKSRIGIDDMDEYEDLTRFIEVVAASGCNTFIVHARKAWLKGLSPKQNRDVPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y+ VY LK+ FPEL I +NGG+KT + LHLN++DGVM+GRE Y NP++++ D +Y
Sbjct: 188 MYDRVYQLKQQFPELHISLNGGVKTLDDAQLHLNHLDGVMIGREVYSNPYILAEVDKRFY 247
Query: 251 SN 252
+
Sbjct: 248 QD 249
>gi|254241250|ref|ZP_04934572.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126194628|gb|EAZ58691.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 332
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 180/243 (74%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGNPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F+VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFMVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|32034537|ref|ZP_00134701.1| COG0042: tRNA-dihydrouridine synthase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 329
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 183/245 (74%), Gaps = 1/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N++ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++
Sbjct: 3 NLMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDP 62
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 63 SENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 122
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 123 DCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSP 181
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
KQNR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L
Sbjct: 182 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSL 241
Query: 242 MSNFD 246
+ D
Sbjct: 242 LGEID 246
>gi|398876360|ref|ZP_10631517.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM67]
gi|398204765|gb|EJM91561.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM67]
Length = 339
Score = 295 bits (755), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA+LM P LV+DC+KAMRD
Sbjct: 81 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGAVLMGHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LKKDFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 201 LRYDVAAQLKKDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|307247131|ref|ZP_07529183.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251674|ref|ZP_07533579.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856380|gb|EFM88531.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860871|gb|EFM92879.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 329
Score = 295 bits (755), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 183/245 (74%), Gaps = 1/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N++ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++
Sbjct: 3 NLMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDP 62
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 63 SENPVALQLGGSDPAQLANCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 122
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 123 DCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSP 181
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
KQNR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L
Sbjct: 182 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSL 241
Query: 242 MSNFD 246
+ D
Sbjct: 242 LGEID 246
>gi|417851442|ref|ZP_12497187.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219514|gb|EGP05163.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 327
Score = 295 bits (755), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPTQLAQCAKIAQQLGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLRMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|421167072|ref|ZP_15625287.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 700888]
gi|404535891|gb|EKA45549.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 700888]
Length = 334
Score = 295 bits (755), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 16 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 75
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 76 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 135
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 136 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 195
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 196 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 255
Query: 250 YSN 252
+ +
Sbjct: 256 FGS 258
>gi|385786265|ref|YP_005817374.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
gi|310765537|gb|ADP10487.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
Length = 331
Score = 295 bits (755), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 179/249 (71%), Gaps = 1/249 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ K + SIAPM++ TDRHCR FHRQ+T+ + LY+EM TT AI+ K L F++EE
Sbjct: 1 MTEKLPAHRFSIAPMLDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGDYLAFSSEE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 HPVALQLGGSDPAALAHCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADG 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
IKAMRD V + +TVK RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGG+K+ E +HL ++DGVM+GREAY+NP L+
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQHLDGVMMGREAYQNPGLL 240
Query: 243 SNFDLNYYS 251
+ D +
Sbjct: 241 AQVDRELFG 249
>gi|402845185|ref|ZP_10893528.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
gi|402271761|gb|EJU20998.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
Length = 332
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 137/242 (56%), Positives = 177/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 TAFAAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIK
Sbjct: 68 VALQLGGSDPAALAHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++
Sbjct: 188 REIPPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKQHLAHMDGVMVGREAYQNPGILAS 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|238021360|ref|ZP_04601786.1| hypothetical protein GCWU000324_01259 [Kingella oralis ATCC 51147]
gi|237868340|gb|EEP69346.1| hypothetical protein GCWU000324_01259 [Kingella oralis ATCC 51147]
Length = 367
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 143/257 (55%), Positives = 185/257 (71%), Gaps = 4/257 (1%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
KR++SIAPM++ TDRH R RQI+R++WLYTEM AI+ G+ L +N EHPIA
Sbjct: 43 KRRLSIAPMLDWTDRHFRYLARQISRHTWLYTEMINAGAIIHGDPARFLAYNESEHPIAL 102
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P +LA++AK + ++ YDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+
Sbjct: 103 QLGGSDPAQLAQAAKKVAQYQYDEINLNCGCPSPRVQKGAFGACLMNDVGLVADCLNAMQ 162
Query: 129 DSV-EIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
+ + +ITVKHRIG+D Y VRDFVGT+ RT+IVHARNA+L L+PK+NR
Sbjct: 163 QAAPDCEITVKHRIGVDKQTEYRIVRDFVGTLREKTPVRTYIVHARNAWLDGLSPKENRD 222
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP LKY++VY LK+DFP+LEIIINGGIKT EI HL ++DGVM+GREAY N +M ++D
Sbjct: 223 IPPLKYHYVYQLKQDFPDLEIIINGGIKTNAEIAEHLRHVDGVMIGREAYHNTMIMRDWD 282
Query: 247 -LNYYSNLPQYKIPTRI 262
L Y S P+ P I
Sbjct: 283 RLFYDSRQPEISYPELI 299
>gi|116050795|ref|YP_790384.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14]
gi|254235779|ref|ZP_04929102.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|421174014|ref|ZP_15631749.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CI27]
gi|115586016|gb|ABJ12031.1| putative TIM-barrel protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126167710|gb|EAZ53221.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|404535063|gb|EKA44776.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CI27]
Length = 332
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|385873315|gb|AFI91835.1| TIM-barrel protein, yjbN family [Pectobacterium sp. SCC3193]
Length = 340
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 135/241 (56%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ +EHP+A Q+G
Sbjct: 23 RFSVAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEDEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPTALAQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ +F+ TV+ G C TFI+HAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|417792931|ref|ZP_12440235.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|429117008|ref|ZP_19177926.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449306619|ref|YP_007438975.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
gi|333952990|gb|EGL70988.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|426320137|emb|CCK04039.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449096652|gb|AGE84686.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
Length = 331
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 178/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAERGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVD 248
>gi|421180047|ref|ZP_15637617.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa E2]
gi|404546077|gb|EKA55140.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa E2]
Length = 332
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|320539402|ref|ZP_08039071.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
gi|320030527|gb|EFW12537.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
Length = 342
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 176/244 (72%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ KY+ + SIAPM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L N EE
Sbjct: 19 VAPKYSPSRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAHNKEE 78
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA AK+ ++ GYDEINLN GCPS RVQNG FGA LM + LV+D
Sbjct: 79 HPVALQLGASDPAALAHCAKLAEQRGYDEINLNVGCPSGRVQNGMFGACLMAQAALVADG 138
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK
Sbjct: 139 IKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFISTVAGRGECAMFTLHARKAWLSGLSPK 198
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR++P L Y VY LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP ++
Sbjct: 199 ENREVPPLDYPRVYQLKRDFPALTIAINGGVKTLEEAQQHLQHLDGVMMGREAYQNPGIL 258
Query: 243 SNFD 246
+ D
Sbjct: 259 ARVD 262
>gi|310818800|ref|YP_003951158.1| tRNA-dihydrouridine synthase a [Stigmatella aurantiaca DW4/3-1]
gi|309391872|gb|ADO69331.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 344
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 128/235 (54%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+ +APMM+ TDRHCR FHRQ++R++ LYTEM TT A+L G++ L F EHP+A Q+G
Sbjct: 9 LCVAPMMDWTDRHCRFFHRQLSRHTLLYTEMLTTGAVLHGDRDRLLGFEPAEHPVALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA++A+I + WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V
Sbjct: 69 GSEPAALAEAARIGEAWGYDEINLNVGCPSDRVQSGRFGACLMAEPELVARLVAAMREAV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI IDD+ + + FV +S+ GC FIVHAR A+L+ L+PK+NR IP L+
Sbjct: 129 RIPVTVKSRIAIDDMEEWPTLERFVRLISAEGCSRFIVHARKAWLQGLSPKENRDIPPLR 188
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK +FP L+I INGGIKT + HL ++DGVM+GR AY+NP+L++ D
Sbjct: 189 YELVYRLKAEFPSLDISINGGIKTLEAAAEHLRHVDGVMIGRAAYENPYLLAEAD 243
>gi|429098155|ref|ZP_19160261.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
gi|426284495|emb|CCJ86374.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
Length = 331
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 180/245 (73%), Gaps = 1/245 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEVNLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+ +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDEQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY L++DFP+L + INGGIKT +E HL ++DGVM+GREAY+NP L+++ D
Sbjct: 189 IPPLDYPRVYQLRRDFPQLTMSINGGIKTLEEAKAHLEHMDGVMVGREAYQNPGLLASVD 248
Query: 247 LNYYS 251
+ +
Sbjct: 249 RDIFG 253
>gi|383311265|ref|YP_005364075.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835284|ref|YP_006240601.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
gi|380872537|gb|AFF24904.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|385201987|gb|AFI46842.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
Length = 327
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|421264167|ref|ZP_15715172.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688632|gb|EJS84195.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 327
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLRMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|422807140|ref|ZP_16855571.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
gi|324112315|gb|EGC06293.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
Length = 333
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/249 (55%), Positives = 180/249 (72%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L LNPK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLNPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++S
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKMHLQHMDGVMVGREAYQNPGILS 245
Query: 244 NFDLNYYSN 252
D +++
Sbjct: 246 AVDREIFAS 254
>gi|419958727|ref|ZP_14474788.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606395|gb|EIM35604.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 331
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 178/243 (73%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAHLVADCI 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKAHLEHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 TVD 248
>gi|56476730|ref|YP_158319.1| coproporphyrinogen III oxidase [Aromatoleum aromaticum EbN1]
gi|56312773|emb|CAI07418.1| Oxygen-independent coprophorphyrinogen III oxidase [Aromatoleum
aromaticum EbN1]
Length = 407
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 207/350 (59%), Gaps = 35/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ Y++ALL D+E +LP + R++ ++FIGGGTPSL+S LD LL ++ LL
Sbjct: 59 GEIPEQAYIDALLADIETALPQVWGRRVLSVFIGGGTPSLMSAAALDRLLTGVRMLLQLD 118
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
ITLEANP T E +F Y G+NRLS+GIQSF++ L LGR HD ++A+ AI+
Sbjct: 119 PLAEITLEANPGTVEAGRFRDYCAAGVNRLSLGIQSFDDAQLVRLGRIHDGREARVAIDT 178
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+ NLDL+YALP QT + + DL+ A+ HLS Y LT+EPNT F PP +
Sbjct: 179 ALANFDRVNLDLMYALPEQTPEQALADLDTALATGATHLSCYQLTLEPNTPFHHAPP-PL 237
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNS------- 873
P D A MQD I + L +++YE SA+++ G E +HNLNYW FGDYLG
Sbjct: 238 PDTDTAADMQDAIEARLGGAGFRHYETSAFARPGEECRHNLNYWTFGDYLGIGAGAHGKL 297
Query: 874 --------------------IAKSKKI--EKKC-----LIFEFMLNALRLKDGFSPNLFF 906
AKS++ E++ L FEFM+NALRL G LF
Sbjct: 298 SSFEGIVREMRHKHPGRYLDAAKSREFVQERRTIGVTELPFEFMMNALRLSGGVPRRLFA 357
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
ERTG+ + +IE +LK A + GL++ + I+PT GR+FLNDL +FL +
Sbjct: 358 ERTGLPLAVIEDELKAAREQGLVEVTPELIRPTERGRHFLNDLLTLFLRD 407
>gi|294634339|ref|ZP_06712877.1| tRNA dihydrouridine synthase A [Edwardsiella tarda ATCC 23685]
gi|451967317|ref|ZP_21920561.1| tRNA-dihydrouridine synthase A [Edwardsiella tarda NBRC 105688]
gi|291092236|gb|EFE24797.1| tRNA dihydrouridine synthase A [Edwardsiella tarda ATCC 23685]
gi|451313872|dbj|GAC65923.1| tRNA-dihydrouridine synthase A [Edwardsiella tarda NBRC 105688]
Length = 345
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/263 (51%), Positives = 184/263 (69%), Gaps = 3/263 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ ++ ++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EH
Sbjct: 19 SGEFPSQRFSIAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEQEH 78
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P LA+ A + + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+
Sbjct: 79 PLALQLGGSNPADLARCAALAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCV 138
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGID+ +SY F+ DF+GTV+ G C TFIVHAR A+L L+PK+
Sbjct: 139 KAMRDVVSIPVTVKTRIGIDEQDSYAFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPKE 198
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR++P L Y VY LK+DFP+L I INGG+K+ E HL ++DGVM+GREAY NP +++
Sbjct: 199 NREVPPLDYPRVYRLKQDFPQLTIAINGGVKSLAEAQAHLCHVDGVMVGREAYHNPGMLA 258
Query: 244 NFDLNYYSNLPQYKIPTRIDIIN 266
D + +P I ++
Sbjct: 259 QVDRQLFDATA--AVPDSIAVVR 279
>gi|261822868|ref|YP_003260974.1| tRNA-dihydrouridine synthase A [Pectobacterium wasabiae WPP163]
gi|261606881|gb|ACX89367.1| TIM-barrel protein, yjbN family [Pectobacterium wasabiae WPP163]
Length = 340
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/241 (56%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ +EHP+A Q+G
Sbjct: 23 RFSVAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEDEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPTALAQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ +F+ TV+ G C TFI+HAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|15597991|ref|NP_251485.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PAO1]
gi|218891014|ref|YP_002439880.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa LESB58]
gi|416860673|ref|ZP_11914362.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 138244]
gi|421153773|ref|ZP_15613310.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|38605052|sp|Q9I048.1|DUSA_PSEAE RecName: Full=tRNA-dihydrouridine synthase A
gi|9948878|gb|AAG06183.1|AE004707_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|218771239|emb|CAW27004.1| putative TIM-barrel protein [Pseudomonas aeruginosa LESB58]
gi|334837366|gb|EGM16131.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 138244]
gi|404523202|gb|EKA33642.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|453045439|gb|EME93158.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PA21_ST175]
Length = 332
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|253991388|ref|YP_003042744.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
gi|253782838|emb|CAQ86003.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
Length = 341
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 182/244 (74%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
I++K + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K + L +N EE
Sbjct: 15 ISNKLWPGRFSVAPMLDWTDRHCRYFHRLLSKQTLLYTEMVTTGAIIHGKGNYLAYNEEE 74
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P+ LA AKI Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC
Sbjct: 75 HPLALQLGGSDPQALAHCAKIAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAKLVADC 134
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPK 182
+KAM+D V + +TVK RIGID+ +SY+F+ DF+ T V +GC F +HAR A+L L+PK
Sbjct: 135 VKAMQDVVNVPVTVKTRIGIDEQDSYEFLCDFIDTVVQHSGCNIFTIHARKAWLSGLSPK 194
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LKKDFP+L I INGGIK+ +E HL Y+DGVM+GREAY+NP ++
Sbjct: 195 ENREIPPLDYPRVYQLKKDFPQLTIAINGGIKSLEEAKQHLQYVDGVMIGREAYQNPAIL 254
Query: 243 SNFD 246
+ D
Sbjct: 255 AQVD 258
>gi|49088070|gb|AAT51528.1| PA2795, partial [synthetic construct]
Length = 333
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|262163875|ref|ZP_06031615.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
gi|262027855|gb|EEY46520.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
Length = 335
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+SKY + S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEH
Sbjct: 7 SSKYAPCRFSVAPMLDWTDRHCRYFHRLLSSQALLYTEMVTTGAIIHGRGDFLAYNQEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q G + PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+
Sbjct: 67 PVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AMR V+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+
Sbjct: 127 AAMRSVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y Y +K+D P L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++
Sbjct: 187 NREIPPLDYPRAYQIKRDLPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLA 246
Query: 244 NFD 246
D
Sbjct: 247 EVD 249
>gi|429118938|ref|ZP_19179683.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
gi|426326596|emb|CCK10420.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
Length = 331
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 178/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPKLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVD 248
>gi|429106337|ref|ZP_19168206.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
gi|426293060|emb|CCJ94319.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
Length = 331
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 179/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC++AM
Sbjct: 69 LQLGGSDPAALAHCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVRAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVD 248
>gi|296388726|ref|ZP_06878201.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PAb1]
gi|416872857|ref|ZP_11917021.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 152504]
gi|334845585|gb|EGM24146.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 152504]
Length = 332
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|188535214|ref|YP_001909011.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
gi|188030256|emb|CAO98143.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
Length = 332
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/254 (54%), Positives = 180/254 (70%), Gaps = 2/254 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE 62
MI K + SIAPM++ TDRHCR FHRQ+TR + LYTEM TT AI+ K L F+ E
Sbjct: 1 MITEKLPAYRFSIAPMLDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGDYLAFSRE 60
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E P+A Q+G ++P LA+ AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 EQPVALQLGGSDPAALAQCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEARLVAD 120
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNP 181
IKAMRD + +TVK RIGIDD +SY F+ DF+ TVS GC FI+HAR A+L L+P
Sbjct: 121 GIKAMRDVTSLPVTVKTRIGIDDQDSYAFLCDFIRTVSEQGGCEMFIIHARKAWLSGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y VY LK+DFP L + +NGG+KT +E +HL ++DGVM+GREAY+NP L
Sbjct: 181 KENREIPPLDYPRVYQLKRDFPHLTLSLNGGVKTLEEAKVHLQHLDGVMMGREAYQNPGL 240
Query: 242 MSNFDLNYYS-NLP 254
++ D + LP
Sbjct: 241 LAQVDRELFGCTLP 254
>gi|375258454|ref|YP_005017624.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|397655399|ref|YP_006496101.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
gi|365907932|gb|AEX03385.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|394344113|gb|AFN30234.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
Length = 332
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/242 (56%), Positives = 177/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 TAFAAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIK
Sbjct: 68 VALQLGGSDPAALAHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYGFLCDFIETVSVKGECEMFIIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++
Sbjct: 188 REIPPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKQHLAHMDGVMVGREAYQNPGILAS 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|269964431|ref|ZP_06178672.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
gi|269830769|gb|EEZ84987.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
Length = 354
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 179/245 (73%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 34 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 93
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 94 GSNPADLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 153
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 154 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 213
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 214 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELF 273
Query: 251 -SNLP 254
SN P
Sbjct: 274 GSNAP 278
>gi|422110551|ref|ZP_16380525.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378640|emb|CBX22711.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 336
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/244 (54%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK ++ +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAVEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP+LEIIINGGI + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPDLEIIINGGITANEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|171463500|ref|YP_001797613.1| oxygen-independent coproporphyrinogen III oxidase [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193038|gb|ACB43999.1| oxygen-independent coproporphyrinogen III oxidase [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 393
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 221/368 (60%), Gaps = 38/368 (10%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + I+ KS DE +Y++AL+ D+E LP R++H+IFIGGGTPSL+S
Sbjct: 29 KCPYCDFNSHQIKKDKS--GFDEARYIKALIADLETELPNTWGRQVHSIFIGGGTPSLLS 86
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
G+D LL I+ + + IT+EANP + E EKF ++ GINR+S+GIQSF ++ L
Sbjct: 87 AEGMDQLLCAIRARINLEPAAEITMEANPGSVEAEKFAGFAEAGINRVSLGIQSFQDEQL 146
Query: 743 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 802
LGR H+ ++AK AI+IA ++F + NLDL+Y LPNQTL D+ A+ + HLS Y
Sbjct: 147 KALGRIHNGEEAKCAIQIALRHFKSVNLDLMYGLPNQTLELAKADIETALSFKTHHLSFY 206
Query: 803 SLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLN 862
+LT+EPNTYF +PP +PS DE +Q++ LL Y++YE+SAY+ E +HNLN
Sbjct: 207 NLTLEPNTYFASFPP-KLPSEDEIDAIQEQNLDLLTKAGYQHYEVSAYAHKNQECKHNLN 265
Query: 863 YWKFGDYL-----------------------------------GNSIAKSKKIEKKCLIF 887
YW+FGDY+ GN++ ++++I K L F
Sbjct: 266 YWRFGDYIGIGAGAHGKVSYPDRITRQVRERQPEAYMTAMESKGNALIENREIAAKDLPF 325
Query: 888 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 947
EFMLNALRLKDG + F ERTG+ + +I L A K GLL N +K T+ G +LN
Sbjct: 326 EFMLNALRLKDGVDTSTFSERTGLPLNVISKGLGEASKKGLLDENPNRLKATAMGIRYLN 385
Query: 948 DLQQIFLN 955
+LQ+IFL+
Sbjct: 386 NLQEIFLD 393
>gi|417854208|ref|ZP_12499530.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218392|gb|EGP04165.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 327
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|325282314|ref|YP_004254855.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
gi|324314123|gb|ADY25238.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
Length = 346
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 182/255 (71%), Gaps = 3/255 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ S+APM++ TDRHCR FHR +T + LYTEM TT A+L G++ LDF A EHP+A Q+
Sbjct: 23 RFSVAPMLDWTDRHCRAFHRCLTSRALLYTEMVTTGAVLHGDRARHLDFGAAEHPLALQL 82
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA+ A + + WGYDE+NLNCGCPS+RVQ+G FGA LM P +V+ C+ AM+++
Sbjct: 83 GGSDPAALAECAALAEHWGYDEVNLNCGCPSDRVQSGAFGACLMATPDVVAACVAAMQEA 142
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVKHRIGIDD Y +R FV TV+ AGCRTFIVHAR A+LK L+PK+NR+IP L
Sbjct: 143 TRLPVTVKHRIGIDDQEDYMDLRRFVETVAGAGCRTFIVHARKAWLKGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y V LK +FPEL I +NGG++T + HL + DGVM+GR AY+ P+L++ D + +
Sbjct: 203 RYELVEQLKAEFPELTISLNGGVQTLAQAQEHLTWADGVMVGRAAYQTPYLLARVDQDIF 262
Query: 251 SNLPQYKIPTRIDII 265
PTR +++
Sbjct: 263 GE--DASPPTRREVL 275
>gi|429111836|ref|ZP_19173606.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
gi|426312993|emb|CCJ99719.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
Length = 331
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 180/240 (75%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ +EHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEQEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC++AM
Sbjct: 69 LQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVRAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVD 248
>gi|429088299|ref|ZP_19151031.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
gi|426508102|emb|CCK16143.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
Length = 331
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/240 (56%), Positives = 178/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSDEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM + LV+DC+KAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEVNLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP L+++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPKLTMSINGGIKTLDDVKAHLEHMDGVMVGREAYQNPGLLASVD 248
>gi|271501941|ref|YP_003334967.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech586]
gi|270345496|gb|ACZ78261.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech586]
Length = 344
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++++ SIAPM++ TDRHCR FHR ++ + LYTEM TT AIL K L ++ EEHP+A
Sbjct: 24 HRQRFSIAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGDYLAYSDEEHPLAL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P LA+ A + ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR
Sbjct: 84 QLGGSDPTALAQCAVLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADCVTAMR 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD +SY+F+ DF+ TVS GC TFIVHAR A+L L+PK+NR+I
Sbjct: 144 ERVSIPVTVKTRIGIDDQDSYEFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREI 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L + INGGIKT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 204 PPLDYPRVYQLKRDFPSLTLAINGGIKTLAEAKQHLEHVDGVMVGREAYQNPGMLAQVDR 263
Query: 248 NYY 250
+ +
Sbjct: 264 DLF 266
>gi|429093448|ref|ZP_19156041.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
gi|426741682|emb|CCJ82154.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
Length = 331
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/249 (55%), Positives = 181/249 (72%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+ +SY+F+ DFVGT + GC TFI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDEQDSYEFLCDFVGTAAEQGGCDTFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY L++DFP+L + INGGIKT +E HL ++DGVM+GREAY+NP L+++ D
Sbjct: 189 IPPLDYPRVYQLRRDFPQLTMSINGGIKTLEEAKAHLEHMDGVMVGREAYQNPGLLASVD 248
Query: 247 LNYYS-NLP 254
+ + N P
Sbjct: 249 RDIFGLNTP 257
>gi|424041341|ref|ZP_17779297.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
gi|408890835|gb|EKM28832.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
Length = 326
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 179/245 (73%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 66 GSNPTDLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNAP 250
>gi|365539321|ref|ZP_09364496.1| tRNA-dihydrouridine synthase A [Vibrio ordalii ATCC 33509]
Length = 326
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 176/236 (74%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEH +A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHSVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LA AK+ Q++GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V
Sbjct: 66 GSNPQDLAHCAKLAQQYGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKSVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD++SY+F+ DF+ VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDMDSYEFLTDFISLVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y+ Y LKKDFP L I +NGG+KT E+ HL ++DGVM+GREAY++P+L++ D
Sbjct: 186 DYSRAYQLKKDFPHLVIAVNGGVKTLAEVSEHLQHLDGVMIGREAYQSPYLLAEVD 241
>gi|308051003|ref|YP_003914569.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
gi|307633193|gb|ADN77495.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
Length = 324
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 178/243 (73%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQ 69
KR S+APM++ TDRH R F R I+R + LYTEM TT AI+ K L FN EEHP+A Q
Sbjct: 2 KRTFSVAPMLDWTDRHYRYFARLISRQALLYTEMVTTGAIIHGKGDYLGFNEEEHPVALQ 61
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+KAM+D
Sbjct: 62 LGGSNPADLAHCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVKAMQD 121
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V I +TVK RIGID+ +SY+F+ F+ TV+SAGC F +HAR A+L+ L+PK+NR+IP
Sbjct: 122 VVSIPVTVKTRIGIDEQDSYEFLTRFIDTVASAGCDIFTIHARKAWLQGLSPKENREIPE 181
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y+ Y +K+DF L I +NGGI T ++ + HL ++DGVM+GREAY+NP++M+ D
Sbjct: 182 LIYDRAYQVKRDFAHLNISVNGGITTLEQCEAHLQHLDGVMVGREAYQNPYMMAEVDQRL 241
Query: 250 YSN 252
Y +
Sbjct: 242 YGD 244
>gi|421082495|ref|ZP_15543378.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
gi|401702732|gb|EJS92972.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
Length = 340
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G
Sbjct: 23 RFSIAPMLDWTDRHCRYFLRQLTGQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLG 82
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS
Sbjct: 83 GSDPTALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDST 142
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I ITVK RIGIDD +SY+F+ +F+ TV+ G C TF++HAR A+L L+PK+NR+IP L
Sbjct: 143 SIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFVIHARKAWLSGLSPKENREIPPL 202
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 203 DYPRVYQLKRDFPALTLAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELF 262
Query: 251 S 251
Sbjct: 263 G 263
>gi|375266803|ref|YP_005024246.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
gi|369842123|gb|AEX23267.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
Length = 326
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LAK AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 66 GSNPEDLAKCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L + INGG+K+ +E HL ++DGVM+GREAY++P+++++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTVAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYILASVDQELF 245
Query: 251 SN 252
+
Sbjct: 246 GS 247
>gi|397166048|ref|ZP_10489494.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
gi|396092210|gb|EJI89774.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
Length = 339
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V
Sbjct: 81 GSDPAQLAHCAKLAQARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+GTV+ G C +F +HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFIGTVAGKGECESFTIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L++ INGGIK+ +E HL ++DGVM+GREAY+NP +++ D Y
Sbjct: 201 DYPRVYQLKRDFPHLKMAINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIY 260
Query: 251 S 251
Sbjct: 261 G 261
>gi|416075623|ref|ZP_11585114.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337443|ref|ZP_21151419.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006108|gb|EGY46572.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443546925|gb|ELT56512.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 327
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/248 (54%), Positives = 178/248 (71%), Gaps = 1/248 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM++ T RHCR FHRQ +R++ LYTEM TQAI+ K LDF+ E P+A
Sbjct: 8 FYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVATQAIIHAKYDHLDFDPAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQ 247
Query: 248 NYY-SNLP 254
+ +N P
Sbjct: 248 ALFNANAP 255
>gi|319639148|ref|ZP_07993902.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
gi|317399587|gb|EFV80254.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
Length = 334
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 183/252 (72%), Gaps = 2/252 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNA 61
M S R++S+APM++ TDRH R RQITR +WLY+EM + A++ G+K L FN
Sbjct: 1 MSASSLPSRRLSVAPMLDWTDRHYRFMARQITRNAWLYSEMVNSGAVVYGDKDRFLSFNE 60
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E P+A Q+G ++P LA +AK + +GY+E+NLNCGCPS RVQ G FGA LM LV+
Sbjct: 61 GEQPVALQLGGSDPHDLAIAAKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVA 120
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLN 180
DC+ AM+D+VEI +TVKHRIG+D Y V DFVG + CRTFIVHARNA+L L+
Sbjct: 121 DCLNAMQDAVEIPVTVKHRIGVDRQTEYQVVADFVGALREKTACRTFIVHARNAWLDGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR++P LKY ++Y LK+DFP+LEI+INGGI T +EI HL ++DGVM+GREAY NP
Sbjct: 181 PKENREVPPLKYEYIYRLKQDFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPM 240
Query: 241 LMSNFDLNYYSN 252
LM ++D +Y++
Sbjct: 241 LMRDWDALFYND 252
>gi|397169543|ref|ZP_10492975.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella aestuarii B11]
gi|396088847|gb|EJI86425.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella aestuarii B11]
Length = 317
Score = 294 bits (752), Expect = 2e-76, Method: Composition-based stats.
Identities = 133/250 (53%), Positives = 183/250 (73%), Gaps = 2/250 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +++++ LYTEM TT AI+ K L FN +E P+ Q+G +EP +
Sbjct: 1 MLDWTDRHCRYFHRLMSKHAVLYTEMVTTGAIIHGKGDYLGFNPQEQPVVLQLGGSEPAE 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ ++ GY INLN GCPS+RVQNG FGA LM +P LV+D +KAM+D++ I ++V
Sbjct: 61 LAHCAKLAEQRGYAAINLNVGCPSDRVQNGMFGACLMARPQLVADSVKAMQDAISIPVSV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
K RIGIDD + Y F++DFV TV++AGCR F++HAR A+LK L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDSDEYQFLQDFVATVAAAGCRQFVIHARKAWLKGLSPKENREIPPLNYPRVYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
LK+DFP L+I INGGIKT E + L Y+DGVM+GREAY NP+L+S D Y ++ +
Sbjct: 181 LKQDFPTLDISINGGIKTLAEAEQQLQYLDGVMIGREAYTNPYLLSQVDAVLYQDV--WS 238
Query: 258 IPTRIDIINL 267
+P + ++ L
Sbjct: 239 VPGQHQLVRL 248
>gi|410694288|ref|YP_003624910.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
gi|294340713|emb|CAZ89105.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
Length = 352
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 176/243 (72%), Gaps = 3/243 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+SIAPM++ TDRHCR FHR ITR + LYTEM TT A+L G+ LD+++ EHP+A Q+G
Sbjct: 5 LSIAPMLDWTDRHCRYFHRLITRQALLYTEMVTTGALLYGDVARHLDYSSHEHPVALQLG 64
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA A++ +WGYDEINLNCGCPS RVQ G FGA LM +P V D + AM ++V
Sbjct: 65 GSEPVDLACCARLALEWGYDEINLNCGCPSPRVQRGAFGACLMAEPSRVRDSVAAMVEAV 124
Query: 132 E--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
I +TVKHRIG+D +SY FVRDFVGTVS GC TFIVHAR+A+L L+PK+NR IP
Sbjct: 125 SGTIPVTVKHRIGVDHEDSYGFVRDFVGTVSQGGCETFIVHARSAWLDGLSPKENRDIPP 184
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+ F+ L++DFP L ++NGGIKT ++I L + GVM+GR AY++P+ ++ +D +
Sbjct: 185 LRPEFILQLRRDFPALAFVLNGGIKTGQQIGEWLPQVSGVMVGRAAYQDPWSLATWDREF 244
Query: 250 YSN 252
+
Sbjct: 245 LGS 247
>gi|145589265|ref|YP_001155862.1| oxygen-independent coproporphyrinogen III oxidase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047671|gb|ABP34298.1| putative oxygen-independent coproporphyrinogen III oxidase
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 392
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 220/369 (59%), Gaps = 37/369 (10%)
Query: 623 KIPYKVIINEAIELVKSFGN-IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI 681
K PY + I+ KS N DE +Y++AL+ D+E LP I R++H++FIGGGTPSL+
Sbjct: 25 KCPYCDFNSHQIKDAKSSTNGFDEPRYIKALIADLETELPNIWGRQVHSVFIGGGTPSLL 84
Query: 682 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKY 741
S G+D LL ++ + + + IT+EANP + E EKF +++ GINR+S+GIQSF ++
Sbjct: 85 SPEGMDQLLSAVRARINLEPDAEITMEANPGSVEAEKFAAFAKSGINRVSLGIQSFQDEQ 144
Query: 742 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 801
L LGR H+ +AK A++IA +F + N+DL+Y LPNQ L D+ A+ ++ PHLSL
Sbjct: 145 LKALGRIHNGAEAKRAVQIALDHFKSVNIDLMYGLPNQNLDSAKTDIETALSFNTPHLSL 204
Query: 802 YSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNL 861
Y+LT+EPNTYF +PP +P+ + M D+ LL Y+ YEISAY+K E +HNL
Sbjct: 205 YNLTLEPNTYFANFPP-KLPNEEVIDAMFDQNVDLLSKAGYRRYEISAYAKKDQECKHNL 263
Query: 862 NYWKFGDYLG-----------------------------------NSIAKSKKIEKKCLI 886
NYW+FGDY+G N++ +S++IE K L
Sbjct: 264 NYWRFGDYIGIGAGAHGKISYPNKITRQVRERHPETYMQLMESKGNALIESREIEAKDLP 323
Query: 887 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 946
FEFMLN LRL DG N + ERTG+ + I L A K GLL N +K T G +L
Sbjct: 324 FEFMLNTLRLSDGVDTNTYSERTGLPLSTISKGLNEACKKGLLDENPSKLKATDQGLRYL 383
Query: 947 NDLQQIFLN 955
N+LQ+IFL+
Sbjct: 384 NNLQEIFLS 392
>gi|417320900|ref|ZP_12107441.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
gi|328472365|gb|EGF43235.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
Length = 326
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 182/245 (74%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LAK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM++ V
Sbjct: 66 GSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNAP 250
>gi|343499074|ref|ZP_08737071.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|418479481|ref|ZP_13048562.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823463|gb|EGU58091.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|384572880|gb|EIF03385.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 333
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
SKY+ + SIAPM++ TDRHCR FHR +T + LYTEM TT AI+ K L +N +EH
Sbjct: 6 TSKYSANRFSIAPMLDWTDRHCRYFHRLLTSETLLYTEMVTTGAIIHGKGDFLAYNQQEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
+A Q+G + P+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+
Sbjct: 66 SVALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AMRD V++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+
Sbjct: 126 SAMRDVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y Y LKKDF L I INGG+KT +E HL ++DGVM+GREAY+NP++++
Sbjct: 186 NREIPPLDYPRAYQLKKDFSHLTIAINGGVKTLEESKEHLQHLDGVMVGREAYQNPYILA 245
Query: 244 NFD 246
N D
Sbjct: 246 NVD 248
>gi|425066300|ref|ZP_18469420.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
gi|404381885|gb|EJZ78350.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
Length = 327
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AIL K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAILHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV++C+ AM
Sbjct: 68 LQLGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVANCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|254230410|ref|ZP_04923791.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
gi|151937069|gb|EDN55946.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
Length = 354
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 180/245 (73%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 34 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 93
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LAK AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V
Sbjct: 94 GSNPEDLAKCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKGVV 153
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 154 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 213
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 214 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELF 273
Query: 251 -SNLP 254
SN P
Sbjct: 274 GSNAP 278
>gi|146309919|ref|YP_001174993.1| tRNA-dihydrouridine synthase A [Enterobacter sp. 638]
gi|145316795|gb|ABP58942.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter sp. 638]
Length = 331
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 179/244 (73%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ S + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EE
Sbjct: 5 LKSTFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEE 64
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+D
Sbjct: 65 HPVALQLGGSDPAALAECAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADG 124
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C TFI+HAR A+L L+PK
Sbjct: 125 IKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIDTVAGKGECETFIIHARKAWLSGLSPK 184
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++
Sbjct: 185 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKTHLQHMDGVMVGREAYQNPGIL 244
Query: 243 SNFD 246
+ D
Sbjct: 245 ATVD 248
>gi|71909464|ref|YP_287051.1| coproporphyrinogen III oxidase [Dechloromonas aromatica RCB]
gi|71849085|gb|AAZ48581.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Dechloromonas aromatica RCB]
Length = 399
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 211/348 (60%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E++Y++AL+ D++ +LP+I R + ++F GGGTPSL+S +D L+ + L +
Sbjct: 53 GTIPEREYVDALIADLQSALPLIWGRPVVSVFFGGGTPSLLSPAAVDELIATFRALAMLA 112
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP T E EKF + G+NRLS+GIQSFN+++L LGR H +++AK A ++
Sbjct: 113 PDAEITLEANPGTVEAEKFAGFRSAGVNRLSLGIQSFNDEHLQALGRIHGAEEAKRAAQL 172
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A ++F++FNLDL+Y LP QT + + D+ A+ +SP HLS Y LT+EPNT F +PP +
Sbjct: 173 AGEHFDSFNLDLMYGLPGQTHEQALSDVETALSFSPSHLSCYQLTLEPNTRFAAFPP-EL 231
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D A MQ+ I + L + NYE SA+++ G + +HNLNYW FGDYL
Sbjct: 232 PESDICADMQESIEARLAAAGFSNYETSAFAQRGKQCKHNLNYWYFGDYLGIGAGAHSKL 291
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
G+++ + ++E L FEFM+NALRL DGF P+LF
Sbjct: 292 TLHDRVLRQMRWKHPKAYLENIRSGHAVQEDNQVEVASLPFEFMMNALRLADGFHPSLFE 351
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RT ++ + ++K AE GLL + I PT+ GR FLN L + FL
Sbjct: 352 ARTAQSLNRVLPQMKAAESDGLLIVGPEKIAPTAKGRRFLNVLLERFL 399
>gi|83645166|ref|YP_433601.1| tRNA-dihydrouridine synthase A [Hahella chejuensis KCTC 2396]
gi|83633209|gb|ABC29176.1| tRNA-dihydrouridine synthase [Hahella chejuensis KCTC 2396]
Length = 349
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 180/245 (73%), Gaps = 1/245 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRH R R ++R+++LYTEM TT AI+ G++ LDFNAEEHPIA Q
Sbjct: 18 RRFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDFNAEEHPIAVQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +L + AKI + WGYDEINLN GCPS+RVQN GA LM P V++C+ AM
Sbjct: 78 LGGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAECVAAMCS 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGIDD +S +F+ +FV TV +AGC TFI+HAR A LK L+PK+NR+IP
Sbjct: 138 AVSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAGCSTFIIHARKAILKGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y Y +K+ FPELEIIINGGIKT E + HL +DGVM+GREAY+ P+++++ D
Sbjct: 198 LIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQEVDGVMIGREAYQRPWMLADVDHRL 257
Query: 250 YSNLP 254
+ P
Sbjct: 258 FHCPP 262
>gi|170720872|ref|YP_001748560.1| tRNA-dihydrouridine synthase A [Pseudomonas putida W619]
gi|169758875|gb|ACA72191.1| TIM-barrel protein, yjbN family [Pseudomonas putida W619]
Length = 321
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 177/246 (71%), Gaps = 2/246 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
RK S+APMM+ TDRHCR F R ++R++ LYTEM TT A+L N H L + EHP+A Q
Sbjct: 3 RKFSVAPMMDWTDRHCRFFLRLLSRHTLLYTEMVTTGALLHNDAHRFLRHDVSEHPLALQ 62
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 63 LGGSVPADLAACARLAEQAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 122
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 123 AVSTPVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPP 182
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LN 248
L+Y+ LK DFP+LEI++NGGIKT +E HL DGVMLGREAY NP++++ D +
Sbjct: 183 LRYDVAAQLKADFPDLEIVLNGGIKTLEESKAHLETFDGVMLGREAYHNPYVLAEVDQVL 242
Query: 249 YYSNLP 254
+ SN P
Sbjct: 243 FGSNAP 248
>gi|290476894|ref|YP_003469805.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
gi|289176238|emb|CBJ83043.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
Length = 345
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 183/242 (75%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
K+ + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K + L +N EEHP
Sbjct: 21 GKFKSSRFSVAPMLDWTDRHCRYFHRLLSKEALLYTEMVTTGAIIHGKGNYLTYNEEEHP 80
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G +EP+ LA+ AKI Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+D IK
Sbjct: 81 LALQLGGSEPQALAQCAKIAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAKLVADGIK 140
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQN 184
AM+D V+I +TVK RIGID+ +SY+F+ DF+ T V ++ C FI+HAR A+L L+PK+N
Sbjct: 141 AMQDVVDIPVTVKTRIGIDEQDSYEFLCDFIDTVVKNSDCDNFIIHARKAWLSGLSPKEN 200
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LKKDFP+L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++
Sbjct: 201 REIPPLDYPRVYQLKKDFPQLTLSINGGIKSLEEAKQHLQYVDGVMIGREAYQNPSILAH 260
Query: 245 FD 246
D
Sbjct: 261 VD 262
>gi|444428866|ref|ZP_21224162.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444237906|gb|ELU49549.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 326
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 178/245 (72%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 66 GSNAADLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL Y+DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQYLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNTP 250
>gi|425064138|ref|ZP_18467263.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
gi|404381731|gb|EJZ78199.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
Length = 327
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ A+I Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPTQLAQCAEIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLRMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|15603283|ref|NP_246357.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Pm70]
gi|38605041|sp|Q9CL29.1|DUSA_PASMU RecName: Full=tRNA-dihydrouridine synthase A
gi|12721794|gb|AAK03502.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 327
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|365101882|ref|ZP_09332486.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
gi|363646657|gb|EHL85894.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
Length = 332
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/259 (52%), Positives = 185/259 (71%), Gaps = 1/259 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 STAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILA 246
Query: 244 NFDLNYYSNLPQYKIPTRI 262
+ D +S + P +
Sbjct: 247 SVDREIFSAATEDTDPVAV 265
>gi|398925467|ref|ZP_10661903.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM48]
gi|398172108|gb|EJM59990.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM48]
Length = 331
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R ++R++ LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSRHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|359798885|ref|ZP_09301454.1| tRNA-dihydrouridine synthase A [Achromobacter arsenitoxydans SY8]
gi|359363023|gb|EHK64751.1| tRNA-dihydrouridine synthase A [Achromobacter arsenitoxydans SY8]
Length = 326
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 131/254 (51%), Positives = 177/254 (69%), Gaps = 4/254 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M+++TDRHCR FHR + + LYTEM TT A+L GN LDF+ EHP+A Q+G +EP
Sbjct: 1 MIDVTDRHCRYFHRLLAPRARLYTEMITTGALLYGNVSRHLDFDEAEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +T
Sbjct: 61 ALAQSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMQDAVDIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+G+D SYDFVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 121 VKHRLGLDYDESYDFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVT 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+ ++NGG+ + DGVMLGR A+ P ++S L + P
Sbjct: 181 QLKRDFPDCTFVLNGGLADSGQSVRAAEAFDGVMLGRAAWHTPRVLSEVSLQLW---PSV 237
Query: 257 KIPTRIDIINLDSE 270
++P+ +++ +E
Sbjct: 238 RLPSDAQVVDAMTE 251
>gi|52426107|ref|YP_089244.1| tRNA-dihydrouridine synthase A [Mannheimia succiniciproducens
MBEL55E]
gi|52308159|gb|AAU38659.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 327
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 182/253 (71%), Gaps = 5/253 (1%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
MN + + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+F+
Sbjct: 1 MNQNQPHFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTAPAIIHAKYDHLEFD 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
E+P+A Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV
Sbjct: 61 PAENPVALQLGGSDPEQLQHCAKLAEQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++C++ M+ VEI +TVK RIGID+++SY F+ DF+ V S GC FIVHAR A+L L+
Sbjct: 121 AECVEKMQAEVEIPVTVKTRIGIDNLDSYQFLCDFIQKVHSKGCNEFIVHARKAWLSGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L YN VY LK+DFP+L I INGGIKT +E+ HL Y+DGVM+GREAY+NP
Sbjct: 181 PKENREIPPLDYNRVYQLKRDFPQLSISINGGIKTIEEMTAHLQYVDGVMVGREAYQNPA 240
Query: 241 LMSN-----FDLN 248
L+ FDLN
Sbjct: 241 LLGQIDRALFDLN 253
>gi|389839414|ref|YP_006341498.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
gi|387849890|gb|AFJ97987.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
Length = 331
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/249 (55%), Positives = 181/249 (72%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 69 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DFVGTV+ GC FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDIFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVD 248
Query: 247 LNYYS-NLP 254
+ N+P
Sbjct: 249 REIFGFNVP 257
>gi|415770748|ref|ZP_11485017.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656654|gb|EGY74263.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 270
Score = 293 bits (750), Expect = 3e-76, Method: Composition-based stats.
Identities = 133/239 (55%), Positives = 175/239 (73%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A
Sbjct: 8 FYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYID 246
>gi|307244957|ref|ZP_07527054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253910|ref|ZP_07535762.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258364|ref|ZP_07540105.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854122|gb|EFM86330.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863114|gb|EFM95056.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867548|gb|EFM99395.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 325
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E
Sbjct: 1 MQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQ
Sbjct: 121 IKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQ 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYECVYQLKRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 EID 242
>gi|119946739|ref|YP_944419.1| tRNA-dihydrouridine synthase A [Psychromonas ingrahamii 37]
gi|119865343|gb|ABM04820.1| tRNA-U16,U17-dihydrouridine synthase [Psychromonas ingrahamii 37]
Length = 330
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 182/258 (70%), Gaps = 2/258 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR FHR +++ + LY+EM TT AIL K L +A EHP+
Sbjct: 10 YPSNRFSIAPMLDWTDRHCRYFHRVMSKNTLLYSEMVTTGAILYGKGDYLQKDAAEHPVC 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G + P LA SA ++ G+DEINLN GCPS+RVQNG FGA LM++ LV D IKAM
Sbjct: 70 LQLGGSAPVDLATSALAGKERGFDEINLNVGCPSDRVQNGRFGACLMSEGELVGDAIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+D+ + ++VK RIGIDD++SY F+ DFVG V+ GC TF+VHAR A+L L+PKQNR +
Sbjct: 130 KDATGLPVSVKTRIGIDDLDSYAFLCDFVGKVAEKGCDTFVVHARKAWLSGLSPKQNRDV 189
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LKKDFP+L I INGGIKT E + HL Y+DGVMLGRE Y NP+L+S+ D
Sbjct: 190 PPLDYERVYQLKKDFPQLTIAINGGIKTLDECETHLQYLDGVMLGREIYTNPYLLSSVDQ 249
Query: 248 NYYSNLPQYKIPTRIDII 265
++ KI TR +++
Sbjct: 250 RLFAG--NEKILTRFEVL 265
>gi|258625982|ref|ZP_05720847.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
gi|258581730|gb|EEW06614.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
Length = 339
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 18 RLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 77
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 78 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVV 137
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 138 DIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 197
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D
Sbjct: 198 DYPRAYQIKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVD 253
>gi|312884652|ref|ZP_07744353.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367565|gb|EFP95116.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 333
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 13 RFSIAPMLDWTDRHCRFFHRLLTNEALLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLG 72
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMR+ V
Sbjct: 73 GSNPQDLAQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMREVV 132
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY F+ DFV V+ GC F +HAR A+L L+PKQNR+IP L
Sbjct: 133 DIPVTVKTRIGIDDQDSYQFLTDFVSIVAEKGGCEQFTIHARKAWLSGLSPKQNREIPPL 192
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y LKKDF L I INGG+KT +E HL ++DGVM+GREAY+NP++++ D
Sbjct: 193 DYPRAYQLKKDFSHLNIAINGGVKTLQESQEHLVHLDGVMMGREAYQNPYILAQVD 248
>gi|423118069|ref|ZP_17105753.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
gi|376402402|gb|EHT14996.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
Length = 332
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 179/245 (73%), Gaps = 1/245 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FAAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 70 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E LHL ++DGVM+GREAY+NP +++ D
Sbjct: 190 IPPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKLHLQHMDGVMVGREAYQNPGILTAVD 249
Query: 247 LNYYS 251
++
Sbjct: 250 REIFA 254
>gi|296100676|ref|YP_003610822.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055135|gb|ADF59873.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 331
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 66 PVALQLGGSDPAALAHCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCI 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKTHLAHMDGVMVGREAYQNPGILT 245
Query: 244 NFD 246
D
Sbjct: 246 TVD 248
>gi|295095415|emb|CBK84505.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 331
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAHLVADCI 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGI + E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGITSLDEAKAHLEHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 TVD 248
>gi|402702506|ref|ZP_10850485.1| tRNA-dihydrouridine synthase A [Pseudomonas fragi A22]
Length = 336
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKNTLLYTEMVTTGALLNGDAERFLRHDEAEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAGCARMAQAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
SV I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 SVSIPVTVKHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT ++ HL DGVMLGREAY NP++++ D
Sbjct: 198 LRYDVAAQLKADFPELEIILNGGIKTLEQCQEHLQVFDGVMLGREAYHNPYILAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|420139392|ref|ZP_14647241.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CIG1]
gi|421160001|ref|ZP_15619101.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
gi|403247869|gb|EJY61476.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CIG1]
gi|404545646|gb|EKA54721.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
Length = 332
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGR+AY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGRKAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|402306879|ref|ZP_10825912.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
gi|400373723|gb|EJP26650.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
Length = 324
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 180/243 (74%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
++ Y + + S+APM++ T RHCR FHRQ T+++ LYTEM T AI+ K L F+ E
Sbjct: 1 MHQTYYRGRFSVAPMLDWTTRHCRYFHRQFTQHTLLYTEMITAPAIIHAKYDLLAFDPAE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPTQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V+I +TVKHRIGIDD++SY+F+ DF+ V + FIVHAR A+L L+PK+
Sbjct: 121 MKAMRDAVDIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-QDFIVHARKAWLSGLSPKE 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKTHLQFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 AID 242
>gi|366158984|ref|ZP_09458846.1| tRNA-dihydrouridine synthase A [Escherichia sp. TW09308]
gi|432374629|ref|ZP_19617655.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
gi|430893024|gb|ELC15372.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
Length = 331
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/249 (54%), Positives = 178/249 (71%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAYPAHRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFDLNYYSN 252
D + +
Sbjct: 246 AVDREIFGS 254
>gi|258622397|ref|ZP_05717420.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
gi|258585311|gb|EEW10037.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
Length = 339
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 18 RLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 77
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 78 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVV 137
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 138 DIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 197
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D
Sbjct: 198 DYPRAYQIKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVD 253
>gi|416181733|ref|ZP_11611738.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M13399]
gi|325134929|gb|EGC57561.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M13399]
Length = 336
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R +S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RHLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEVYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V+I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|386020310|ref|YP_005938334.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 4166]
gi|327480282|gb|AEA83592.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 4166]
Length = 322
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/246 (56%), Positives = 180/246 (73%), Gaps = 2/246 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ+++++ LYTEM TT A+L GN L ++ EHP+A Q
Sbjct: 4 RRFSVAPMMDWTDRHCRFFLRQLSKHALLYTEMVTTGALLHGNTARFLRYDETEHPLALQ 63
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 64 LGGSVPGDLAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 123
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +++TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A LK L+PKQNR +P
Sbjct: 124 AVGVEVTVKHRIGINGRDSYSQLCDFVGQVREAGCRSFTVHARIAILKGLSPKQNRDVPP 183
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D +
Sbjct: 184 LRYDVAAQLKRDFPDLEIILNGGIKTLEECREHLQTFDGVMLGREAYHNPYLLAQVDSSL 243
Query: 250 Y-SNLP 254
+ SN P
Sbjct: 244 FGSNAP 249
>gi|260773671|ref|ZP_05882587.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
gi|260612810|gb|EEX38013.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
Length = 335
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
K+ ++S+APM++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEH
Sbjct: 7 TDKFKAHRLSVAPMLDWTDRHCRYFHRLLTSQTLLYTEMVTTGAIIHGKGDFLTYNQEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P++ Q+G + P LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+
Sbjct: 67 PVSLQLGGSNPTDLAHCAKLAQDRGYDEINLNVGCPSDRVQNGKFGACLMAEPQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQ 183
AMR+ V+I +TVK RIGIDD +SY+F+ FV VS GC F +HAR A+L L+PK+
Sbjct: 127 AAMREVVDIPVTVKTRIGIDDQDSYEFLTRFVQLVSEQGGCEQFTIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y Y LK+DFP L I INGG+K+ E+ HL ++DGVM+GREAY+NP+L++
Sbjct: 187 NREIPPLDYPRAYQLKQDFPHLTIAINGGVKSLTEVLDHLQHLDGVMVGREAYQNPYLLA 246
Query: 244 NFD 246
D
Sbjct: 247 EAD 249
>gi|317046530|ref|YP_004114178.1| yjbN family TIM-barrel protein [Pantoea sp. At-9b]
gi|316948147|gb|ADU67622.1| TIM-barrel protein, yjbN family [Pantoea sp. At-9b]
Length = 331
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 137/250 (54%), Positives = 183/250 (73%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHRQ++ + LYTEM TT AI+ K L F+ +E
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRQLSGDTLLYTEMVTTGAIIHGKGDYLAFSEDE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ A++ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC
Sbjct: 61 HPVALQLGGSDPAALAQCAQLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
IKAMRD V I +TVK RIGIDD +SY F+ DFVGTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFVGTVAQQGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L + INGGIK+ E +HL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPQLTMAINGGIKSLAEAKVHLQHMDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRELFGR 250
>gi|334123884|ref|ZP_08497898.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|333389862|gb|EGK61018.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
Length = 331
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAHLVADCI 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V + +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGI + E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGITSLDEAKAHLEHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 TVD 248
>gi|126207634|ref|YP_001052859.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165975602|ref|YP_001651195.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307260603|ref|ZP_07542295.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126096426|gb|ABN73254.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875703|gb|ABY68751.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306869680|gb|EFN01465.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 325
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E
Sbjct: 1 MQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQ
Sbjct: 121 IKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQ 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 EID 242
>gi|104782703|ref|YP_609201.1| tRNA-dihydrouridine synthase A [Pseudomonas entomophila L48]
gi|95111690|emb|CAK16414.1| tRNA-dihydrouridine synthase A [Pseudomonas entomophila L48]
Length = 333
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L N H L + EHP+A Q
Sbjct: 15 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLHNDAHRFLRHDDSEHPLALQ 74
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D
Sbjct: 75 LGGSVPADLAACARLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMQD 134
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 135 AVSIPVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPP 194
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFP+LE+++NGGIKT +E HL DGVMLGREAY NP+L++ D
Sbjct: 195 LRYDVAAQLKADFPDLELVLNGGIKTLEECRTHLETFDGVMLGREAYHNPYLLAEVDQQL 254
Query: 250 YSN 252
+ +
Sbjct: 255 FGS 257
>gi|398900346|ref|ZP_10649403.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM50]
gi|398181245|gb|EJM68815.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM50]
Length = 331
Score = 292 bits (748), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|218551359|ref|YP_002385151.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
gi|218358901|emb|CAQ91560.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
Length = 331
Score = 292 bits (748), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 180/249 (72%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKMHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFDLNYYSN 252
D +++
Sbjct: 246 AVDREIFAS 254
>gi|170769561|ref|ZP_02904014.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
gi|170121618|gb|EDS90549.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
Length = 331
Score = 292 bits (748), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 136/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 YPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 69 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKAHLQYMDGVMVGREAYQNPGILAAVD 248
>gi|303249850|ref|ZP_07336054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251970|ref|ZP_07338141.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649400|gb|EFL79585.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302651417|gb|EFL81569.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 325
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ +++ + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E
Sbjct: 1 MQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPAQLANCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQ
Sbjct: 121 IKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQ 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 EID 242
>gi|237728132|ref|ZP_04558613.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
gi|226910143|gb|EEH96061.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
Length = 331
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 134/259 (51%), Positives = 185/259 (71%), Gaps = 1/259 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 STAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFDLNYYSNLPQYKIPTRI 262
+ D ++ + P +
Sbjct: 246 SVDREIFAATTEDTDPVAV 264
>gi|209363933|ref|YP_001424351.2| tRNA-dihydrouridine synthase A [Coxiella burnetii Dugway 5J108-111]
gi|212218379|ref|YP_002305166.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuK_Q154]
gi|207081866|gb|ABS78105.2| NIFR3-like protein [Coxiella burnetii Dugway 5J108-111]
gi|212012641|gb|ACJ20021.1| NIFR3-like protein [Coxiella burnetii CbuK_Q154]
Length = 353
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 176/244 (72%), Gaps = 5/244 (2%)
Query: 8 YNK----RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
YN+ R+ISIAPMM TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ E
Sbjct: 22 YNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPE 81
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP+A QVG ++P+ LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+D
Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVAD 141
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+ AM V I ++VK R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P
Sbjct: 142 CVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPA 201
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR +P L Y VY LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP
Sbjct: 202 ENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFC 261
Query: 243 SNFD 246
+ FD
Sbjct: 262 AAFD 265
>gi|333900306|ref|YP_004474179.1| hypothetical protein Psefu_2114 [Pseudomonas fulva 12-X]
gi|333115571|gb|AEF22085.1| TIM-barrel protein, yjbN family [Pseudomonas fulva 12-X]
Length = 334
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
RK S+APMM+ TD HCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q
Sbjct: 16 RKFSVAPMMDWTDHHCRYFLRQLSQHALLYTEMVTTGALLHGDTARFLHYDQSEHPVALQ 75
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM D
Sbjct: 76 LGGSNPAELAACARLAEQAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMGD 135
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGID +SY + DFVG V AGCR+F VHAR A L L+PK+NR+IP
Sbjct: 136 AVSIPVTVKHRIGIDGRDSYAELCDFVGQVRDAGCRSFTVHARIAILSGLSPKENREIPP 195
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DF +LE+I+NGGIKT + HL+ DGVMLGREAY NP+L++ D
Sbjct: 196 LRYDIAAQLKQDFADLELILNGGIKTLEACQEHLHTFDGVMLGREAYHNPYLLAEVDQQL 255
Query: 250 YSN 252
+++
Sbjct: 256 FAS 258
>gi|424818607|ref|ZP_18243758.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
gi|325499627|gb|EGC97486.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
Length = 331
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 180/249 (72%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ Y + SIAPM++ TDRHCR F R ++R LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAYPAYRFSIAPMLDWTDRHCRYFLRLLSRNMLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYSRVYQLKRDFPHLTMSINGGIKSLEEAKMHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFDLNYYSN 252
D +++
Sbjct: 246 AVDREIFAS 254
>gi|455644996|gb|EMF24086.1| tRNA-dihydrouridine synthase A [Citrobacter freundii GTC 09479]
Length = 332
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 134/259 (51%), Positives = 185/259 (71%), Gaps = 1/259 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 STAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILA 246
Query: 244 NFDLNYYSNLPQYKIPTRI 262
+ D ++ + P +
Sbjct: 247 SVDREIFAAATEDADPVAV 265
>gi|421847475|ref|ZP_16280612.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771129|gb|EKS54842.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 332
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 134/259 (51%), Positives = 185/259 (71%), Gaps = 1/259 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 STAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILA 246
Query: 244 NFDLNYYSNLPQYKIPTRI 262
+ D ++ + P +
Sbjct: 247 SVDREIFAAATEDADPVAV 265
>gi|392543378|ref|ZP_10290515.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas piscicida JCM
20779]
Length = 339
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 177/236 (75%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AI+ K L F A E P+A Q+
Sbjct: 22 RRFSVAPMLDWTDRHCRTFHRKLTKHAVLYTEMITTGAIIFGKGDYLAFGAHELPVALQL 81
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA+ AK +++GY E+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+
Sbjct: 82 GGSDPKALAECAKRAEQYGYSEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKAE 141
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGID+ +SY+F+ + T + GC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 142 VDIPVTVKTRIGIDEQDSYEFLTALIETSQAVGCDDFIIHARKAWLQGLSPKENREIPPL 201
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LKKD+P+L I INGG+KT +E HL ++DGVM+GREAY NPF++S D
Sbjct: 202 DYPRVYQLKKDYPDLHISINGGVKTLEECQHHLVHLDGVMVGREAYSNPFMLSQVD 257
>gi|224824835|ref|ZP_03697942.1| oxygen-independent coproporphyrinogen III oxidase
[Pseudogulbenkiania ferrooxidans 2002]
gi|224603328|gb|EEG09504.1| oxygen-independent coproporphyrinogen III oxidase
[Pseudogulbenkiania ferrooxidans 2002]
Length = 396
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 206/349 (59%), Gaps = 34/349 (9%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
DE Y+ ALL D+E +LP + R +HTIF+GGGTPSL S +D LL I+ +
Sbjct: 46 GFDEDAYVAALLADLESALPAVWGRPVHTIFMGGGTPSLFSARAMDTLLAGIRARVRLYP 105
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP TFE +KF + GINRLSIGIQSF+ +L LGR H A+ A++IA
Sbjct: 106 DAEITMEANPGTFESDKFKGFREAGINRLSIGIQSFDPAHLKALGRIHHGDDARRAVDIA 165
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+F+N NLDL+YALP QTL + + D+ A+ + H+S Y LTIEPNT F +Y P +P
Sbjct: 166 LTHFDNVNLDLMYALPGQTLEQALTDMGTALSFGVTHVSAYHLTIEPNTLFARYLPPKLP 225
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
++ +A MQ+ + + L + +YE SA+++ G E +HNLNYW+FGDYLG
Sbjct: 226 DDELSADMQEALEARLTEAGFGHYETSAFARPGRECRHNLNYWQFGDYLGIGAGAHAKIS 285
Query: 872 ------------------NSIAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFFE 907
++A+ + + + I FEFM+N LRL DGF LF E
Sbjct: 286 AHDGIVREMRYKQPAAYLKAVAEGRPTQSRERIARADRPFEFMMNLLRLTDGFELRLFAE 345
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
RTG+ + I+ +L AE GL++R+ +KPT G+ FLNDL +FL
Sbjct: 346 RTGLPLTHIQRELAEAEAQGLIERDLTTLKPTLKGQRFLNDLLTLFLKE 394
>gi|375105977|ref|ZP_09752238.1| tRNA-dihydrouridine synthase [Burkholderiales bacterium JOSHI_001]
gi|374666708|gb|EHR71493.1| tRNA-dihydrouridine synthase [Burkholderiales bacterium JOSHI_001]
Length = 338
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 130/250 (52%), Positives = 176/250 (70%), Gaps = 6/250 (2%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
N ++ +APM++ TDRHCR HR ++ ++ LYTEM TT A+L G+ LDF+AEEHP+A
Sbjct: 8 NPWRLCVAPMLDWTDRHCRFLHRLLSPHARLYTEMVTTGALLHGDLPRHLDFSAEEHPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP LA K+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV DC+ AM
Sbjct: 68 LQLGGSEPADLAACVKLAQRWGYDEVNLNCGCPSERVQRGAFGACLMAEPGLVRDCVAAM 127
Query: 128 RDSV-----EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
++ + +TVKHRIGID + SYDFVRDFVGTV+ GC+ FIVHARNA+L+ L+PK
Sbjct: 128 VEAAAASPRPLPVTVKHRIGIDRVESYDFVRDFVGTVAEGGCQVFIVHARNAWLQGLSPK 187
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
NR+IP L++ FV LK+DFP+ ++NGG+ + HL +DGVM+GR AY+ P +
Sbjct: 188 DNREIPPLRHAFVERLKQDFPQGVFVLNGGLADVAAVQQHLRVLDGVMIGRHAYQQPAKL 247
Query: 243 SNFDLNYYSN 252
+ +D +
Sbjct: 248 AAWDAALFGG 257
>gi|212212648|ref|YP_002303584.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuG_Q212]
gi|212011058|gb|ACJ18439.1| NIFR3-like protein [Coxiella burnetii CbuG_Q212]
Length = 353
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 176/244 (72%), Gaps = 5/244 (2%)
Query: 8 YNK----RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
YN+ R+ISIAPMM TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ E
Sbjct: 22 YNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPE 81
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP+A QVG ++P+ LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+D
Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVAD 141
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+ AM V I ++VK R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P
Sbjct: 142 CVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPA 201
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR +P L Y VY LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP
Sbjct: 202 ENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFC 261
Query: 243 SNFD 246
+ FD
Sbjct: 262 AAFD 265
>gi|431801645|ref|YP_007228548.1| tRNA-dihydrouridine synthase A [Pseudomonas putida HB3267]
gi|430792410|gb|AGA72605.1| tRNA-dihydrouridine synthase A [Pseudomonas putida HB3267]
Length = 336
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 172/243 (70%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L N H L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKNTLLYTEMVTTGALLHNDAHRFLRHDVSEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVSTPVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKADFPDLEIVLNGGIKTLAECQAHLETFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|392977169|ref|YP_006475757.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323102|gb|AFM58055.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 331
Score = 292 bits (747), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+ + + SIAPM++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 6 QTAFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 66 PVALQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCI 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECGMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKTHLAHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 TVD 248
>gi|395231244|ref|ZP_10409536.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|424731198|ref|ZP_18159785.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
gi|394715022|gb|EJF20892.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|422894384|gb|EKU34197.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
Length = 332
Score = 291 bits (746), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 134/259 (51%), Positives = 185/259 (71%), Gaps = 1/259 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 STAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILA 246
Query: 244 NFDLNYYSNLPQYKIPTRI 262
+ D ++ + P +
Sbjct: 247 SVDREIFAATTEDTDPVTV 265
>gi|260914683|ref|ZP_05921149.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
gi|260631282|gb|EEX49467.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
Length = 328
Score = 291 bits (746), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 180/246 (73%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
M + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L F+
Sbjct: 1 MTQNQPHFYRGHFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLAFS 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EE+P+A Q+G + P +LA+ AKI ++ GY EINLN GCPS+RVQNG FGA LM K LV
Sbjct: 61 PEENPVALQLGGSNPTQLAQCAKIAEQRGYAEINLNVGCPSDRVQNGMFGACLMGKADLV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++CI AM++ V+I +TVK RIGIDD++SY+F+ DFV V AGC+ FI+HAR A+L L+
Sbjct: 121 AECINAMQEVVDIPVTVKTRIGIDDLDSYEFLCDFVQKVHQAGCQEFIIHARKAWLSGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L Y VY LK+DFP+L + INGGIKT +E+ HL Y+DGVM+GREAY+NP
Sbjct: 181 PKENREIPPLDYERVYQLKRDFPQLIMSINGGIKTIEEMQQHLQYMDGVMVGREAYQNPS 240
Query: 241 LMSNFD 246
L+ D
Sbjct: 241 LLGYID 246
>gi|398940390|ref|ZP_10669207.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM41(2012)]
gi|398162908|gb|EJM51086.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM41(2012)]
Length = 331
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAMCARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|108761431|ref|YP_630504.1| tRNA-dihydrouridine synthase A [Myxococcus xanthus DK 1622]
gi|108465311|gb|ABF90496.1| tRNA-dihydrouridine synthase A [Myxococcus xanthus DK 1622]
Length = 332
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 128/255 (50%), Positives = 185/255 (72%), Gaps = 3/255 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDR+CR FHRQ++R++ LYTEM TT AIL G+++ L ++A EHP+A Q+G
Sbjct: 9 LSVAPMMDWTDRNCRYFHRQLSRHTLLYTEMVTTGAILHGDRERLLGYDAAEHPVALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA+SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V
Sbjct: 69 GSEPAALAESARIGEQWGYDEINLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI ID++ + + F+ VS+AGC FIVHAR A+L+ L+PK+NR +P L+
Sbjct: 129 SIPVTVKSRIAIDELEEWPTLEGFIRKVSAAGCTRFIVHARKAWLQGLSPKENRDVPPLR 188
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK +FP L+I INGGIKT L ++DGVM+GR Y+NP+L++ D ++
Sbjct: 189 YDLVHRLKVEFPHLDISINGGIKTLDAAAEQLRHVDGVMMGRAPYENPYLLAEADRRFFG 248
Query: 252 NLPQYKIPTRIDIIN 266
+P R +++
Sbjct: 249 A--TTPVPQRHEVVE 261
>gi|283787222|ref|YP_003367087.1| tRNA-dihydrouridine synthase A [Citrobacter rodentium ICC168]
gi|282950676|emb|CBG90350.1| putative tRNA-dihydrouridine synthase A [Citrobacter rodentium
ICC168]
Length = 345
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
+ + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP
Sbjct: 21 AHFPAHRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSGEEHP 80
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P +LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+K
Sbjct: 81 LALQLGGSDPAQLAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 140
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMR++V I +TVK RIGIDD +SY+F+ DF+ TVS G C TFI+HAR A+L L+PK+N
Sbjct: 141 AMRNTVSIPVTVKTRIGIDDQDSYEFLCDFIDTVSGHGECETFIIHARKAWLSGLSPKEN 200
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP ++++
Sbjct: 201 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLAEAKAHLEHMDGVMVGREAYQNPGILAS 260
Query: 245 FD 246
D
Sbjct: 261 VD 262
>gi|418465593|ref|ZP_13036527.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359755865|gb|EHK90027.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 328
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 130/239 (54%), Positives = 176/239 (73%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + ++APM++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF++ E P+A
Sbjct: 8 FYRGRFAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDSAEQPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L A++ ++ GY EINLN GCPS+RVQNG FGA LM LV++C++ M
Sbjct: 68 LQLGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMANAALVAECVQQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+++V I +TVK RIGIDD +SYDF+ +F+ T+ AGC+ FIVHAR A+L L+PKQNR+I
Sbjct: 128 QEAVRIPVTVKTRIGIDDFDSYDFLCNFIETLQQAGCQEFIVHARKAWLSGLSPKQNREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTLDEMQRHLQQVDGVMVGREAYQNPSLLGYID 246
>gi|307132468|ref|YP_003884484.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
gi|306529997|gb|ADM99927.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
Length = 346
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 137/264 (51%), Positives = 184/264 (69%), Gaps = 4/264 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ S ++ R S+APM++ TDRHCR FHR ++ + LYTEM TT AIL K L ++ EE
Sbjct: 22 LRSNWHGR-FSVAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGDYLAYSDEE 80
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ A + ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC
Sbjct: 81 HPLALQLGGSDPAALAQCAVLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADC 140
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPK 182
+ AMR+ V+I +TVK RIGIDD +SY F+ DF+ TVS GC TFIVHAR A+L L+PK
Sbjct: 141 VTAMRERVDIPVTVKTRIGIDDQDSYAFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPK 200
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGG+KT E HL ++DGVM+GREAY+NP ++
Sbjct: 201 ENREIPPLDYPRVYQLKRDFPSLTLAINGGVKTLAEARQHLQHVDGVMVGREAYQNPGML 260
Query: 243 SNFDLNYYSNLPQYKIPTRIDIIN 266
+ D + P + D++
Sbjct: 261 AQVDRELFGA--DSAAPDQADVVR 282
>gi|374314399|ref|YP_005060828.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
gi|363988625|gb|AEW44816.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
Length = 328
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 178/244 (72%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
I SKY+ + S+APM+N TDRHCR FHR +T+ + LYTEM TT AI+ +KK L +N EE
Sbjct: 5 IFSKYHASRFSVAPMLNWTDRHCRYFHRLLTKETLLYTEMITTGAIIHSKKDYLAYNEEE 64
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP++ Q+G ++ LA AK+ ++ GYDEINLN GCPSNRVQNG FGA LM K LV+D
Sbjct: 65 HPVSLQLGGSDLTALAFCAKLAEQRGYDEINLNVGCPSNRVQNGIFGACLMKKATLVADS 124
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPK 182
IKAM D+V I +T+K RIGIDD +SY+F+ DF+ TVS+ G C F +HAR A L LNPK
Sbjct: 125 IKAMNDAVSIPVTLKTRIGIDDRDSYEFLCDFIYTVSNQGQCSMFTLHARKALLSGLNPK 184
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
QNR+IP L Y VY LK+DFP L IIINGGI T +E HL ++DGVM+GR AY+NP ++
Sbjct: 185 QNREIPPLDYLRVYRLKQDFPALNIIINGGINTLEESSQHLQHLDGVMMGRAAYQNPSIL 244
Query: 243 SNFD 246
D
Sbjct: 245 LEVD 248
>gi|343495972|ref|ZP_08734079.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
gi|342821813|gb|EGU56579.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
Length = 323
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 135/256 (52%), Positives = 181/256 (70%), Gaps = 3/256 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+
Sbjct: 2 QRFSVAPMLDWTDRHCRYFHRLMSDNALLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQL 61
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR+
Sbjct: 62 GGSNPADLATCAKLAQDRGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMREV 121
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP
Sbjct: 122 VDVPVTVKTRIGIDDQDSYEFLTDFVSVVSEKGGCEQFTIHARKAWLSGLSPKENREIPP 181
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y Y +KKDFP L I INGGIKT +E HL ++DGVM+GREAY++P+++++ D
Sbjct: 182 LDYPRAYQIKKDFPNLTIAINGGIKTLEEAKAHLQHLDGVMIGREAYQSPYILASVDQEL 241
Query: 250 YSNLPQYKIPTRIDII 265
+ + I R DI+
Sbjct: 242 FGS--DKSIKKRSDIV 255
>gi|359298827|ref|ZP_09184666.1| tRNA-dihydrouridine synthase A [Haemophilus [parainfluenzae] CCUG
13788]
Length = 324
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
++ Y + + S+APM++ T RHCR FHRQ T+++ LYTEM T AI+ K L F+ E
Sbjct: 1 MHQTYYRGRFSVAPMLDWTTRHCRYFHRQFTQHTLLYTEMITAPAIIHAKYDLLAFDPAE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPTQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V+I +TVKHRIGIDD++SY+F+ DF+ V + FIVHAR A+L L+PK+
Sbjct: 121 MKAMRDAVDIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-QDFIVHARKAWLSGLSPKE 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLNISINGGIKTIDEIKTHLQFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 AID 242
>gi|398862118|ref|ZP_10617731.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM79]
gi|398231392|gb|EJN17383.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM79]
Length = 331
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|432409561|ref|ZP_19652251.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|432493381|ref|ZP_19735206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
gi|430939926|gb|ELC60132.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|431030101|gb|ELD43122.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
Length = 345
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YGSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
Query: 247 LNYYSN 252
+ +
Sbjct: 263 REIFGS 268
>gi|419838647|ref|ZP_14362070.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
gi|386910237|gb|EIJ74896.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
Length = 329
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 181/244 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP+L I INGGIKT +EI HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPQLTIAINGGIKTIEEIKQHLQYVDGVMVGREAYQNPSLLGQIDQ 247
Query: 248 NYYS 251
++
Sbjct: 248 ALFA 251
>gi|390950169|ref|YP_006413928.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
gi|390426738|gb|AFL73803.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
Length = 336
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 140/275 (50%), Positives = 193/275 (70%), Gaps = 5/275 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
RKI++APM++ TDRH R F R ITR+S LYTEM TT A+L G+++ L F+ EHP+A Q
Sbjct: 15 RKIAVAPMLDWTDRHFRFFLRLITRHSLLYTEMVTTGALLHGDRERFLRFDPAEHPVALQ 74
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P ++A+ A++ WGYDEIN+N GCPS+RVQNG FGA LM +P LV+DC+ AM+D
Sbjct: 75 LGGSDPVEMARCARLGANWGYDEININVGCPSDRVQNGRFGACLMAEPGLVADCVAAMKD 134
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V + +TVK RIGIDD +SY + DFVGT ++AGC IVHAR A+LK L+PK+NR +P
Sbjct: 135 AVTVPVTVKTRIGIDDRDSYGELVDFVGTQAAAGCDALIVHARKAWLKGLSPKENRDVPP 194
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y V LK DFP+L I INGGIKT E L +DGVM+GREAY NP++++ D
Sbjct: 195 LRYEVVQQLKTDFPDLTISINGGIKTLIEAADFLTTLDGVMIGREAYHNPWMLAQADRVV 254
Query: 250 YSNLPQYKIPTRIDIIN--LDSENRENEGDIILSS 282
+ + + TR ++++ L RE + LS+
Sbjct: 255 FGD--DHPPLTRHEVLDRFLPYAQRELAAGVPLSA 287
>gi|381150765|ref|ZP_09862634.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
gi|380882737|gb|EIC28614.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
Length = 312
Score = 291 bits (746), Expect = 1e-75, Method: Composition-based stats.
Identities = 135/251 (53%), Positives = 189/251 (75%), Gaps = 4/251 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDR+CR FHR IT+ + LYTEM TT A+L G+++ L F++ EHP+A Q+G ++P
Sbjct: 1 MLDWTDRYCRFFHRLITKRALLYTEMITTGALLHGDRQRFLQFDSSEHPLALQLGGSDPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA AK+ + +GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AMR++V I +T
Sbjct: 61 DLAACAKMAEDFGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMRNAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VK RIGIDD +SY+ + F+GTV+ AGCRTFIVHAR A+LK L+PKQNR++P L+Y VY
Sbjct: 121 VKSRIGIDDRDSYEELAHFIGTVADAGCRTFIVHARKAWLKGLSPKQNREVPPLRYEMVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 255
LK+DFP L I++NGGI T ++ + L N +DGVM+GREAY NP++++ D + +P
Sbjct: 181 RLKQDFPPLRIVLNGGITTLEQAEEALRNGVDGVMMGREAYHNPYILAEVDRRLFG-MPA 239
Query: 256 YKIPTRIDIIN 266
+P R +I+N
Sbjct: 240 DAVP-RSEIVN 249
>gi|194437343|ref|ZP_03069441.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
gi|194423899|gb|EDX39888.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
Length = 345
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YGSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
Query: 247 LNYYSN 252
+ +
Sbjct: 263 REIFGS 268
>gi|238918205|ref|YP_002931719.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
gi|238867773|gb|ACR67484.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
Length = 349
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
++ ++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L + EEHP
Sbjct: 24 GAFSSQRFSIAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYCEEEHP 83
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + P LA+ A++ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+K
Sbjct: 84 LALQLGGSNPADLARCARLAETRGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVK 143
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGID+ +SY F+ DF+GTV+ G C TFIVHAR A+L L+P++N
Sbjct: 144 AMRDVVSIPVTVKTRIGIDEQDSYPFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPREN 203
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R++P L Y VY LK+DFP L I +NGG+K E HL ++DGVM+GREAY NP +++
Sbjct: 204 REVPPLDYPRVYRLKQDFPHLTIALNGGVKRLDEARAHLQHVDGVMVGREAYHNPGILAQ 263
Query: 245 FD 246
D
Sbjct: 264 VD 265
>gi|398841523|ref|ZP_10598739.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM102]
gi|398108208|gb|EJL98186.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM102]
Length = 333
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 15 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 74
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 75 LGGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 134
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 135 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 194
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 195 LRYDVAARLKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 254
Query: 250 YSN 252
+ +
Sbjct: 255 FGS 257
>gi|330445027|ref|ZP_08308681.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493145|dbj|GAA03178.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 346
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/250 (53%), Positives = 181/250 (72%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ + ++ S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N EE
Sbjct: 18 VTGDFPMQRFSVAPMLDWTDRHCRYFHRIMSKEALLYTEMVTTGAIIHGKGDFLAYNEEE 77
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G + P LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C
Sbjct: 78 HPVALQLGGSNPIDLARCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGEAELVAQC 137
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
+ AMRD V+I +TVK RIGIDD +SY+F++DF+ VS GC F +HAR A+L L+PK
Sbjct: 138 VTAMRDVVDIPVTVKTRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPK 197
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DF L + INGGIKT +E++ HL ++DGVM+GREAY++P+LM
Sbjct: 198 ENREIPPLDYPRVYQLKQDFAHLTMAINGGIKTFEEMEEHLKHMDGVMVGREAYQSPYLM 257
Query: 243 SNFDLNYYSN 252
S D + +
Sbjct: 258 SEVDQRLFGS 267
>gi|386742972|ref|YP_006216151.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
gi|384479665|gb|AFH93460.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
Length = 327
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 182/248 (73%), Gaps = 2/248 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L F+ EE P+A
Sbjct: 6 NINRFSVAPMLDWTDRHCRYFHRLLSKNTLLYTEMVTTGAIIHGKGDYLAFSEEEQPVAL 65
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM+
Sbjct: 66 QLGGSDPEALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMQ 125
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKI 187
D V I +TVK RIGID+ +SY+F+ DF+ TVS+ GC FI+HAR A+L L+PK+NR+I
Sbjct: 126 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDTVSTKGGCEMFIIHARKAWLSGLSPKENREI 185
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L + INGGIKT +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 186 PPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKEHLRHLDGVMVGREAYQNPSILTAVDN 245
Query: 248 NYY-SNLP 254
+ S LP
Sbjct: 246 QLFDSQLP 253
>gi|350572018|ref|ZP_08940329.1| tRNA dihydrouridine synthase A [Neisseria wadsworthii 9715]
gi|349790787|gb|EGZ44687.1| tRNA dihydrouridine synthase A [Neisseria wadsworthii 9715]
Length = 336
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/251 (54%), Positives = 186/251 (74%), Gaps = 2/251 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQA-ILGNKKHCLDFNAE 62
+ +K R++S+APM++ TDRH R RQITR++WLY EM A I G+K L N
Sbjct: 1 MTNKLPPRRLSVAPMLDWTDRHYRYMARQITRHTWLYGEMINAGAVIFGDKDRFLLHNEC 60
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E+P+A Q+G +EP LAK+AK +++GYDE+NLNCGCPS RVQ G FGA LM + LV+D
Sbjct: 61 ENPVALQLGGSEPADLAKAAKAAEQYGYDEVNLNCGCPSPRVQKGAFGACLMNEVGLVAD 120
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNP 181
C+ AM+D+V+ID+TVKHRIG+D Y V DFVGT+++ C+T+IVHARNA+L L+P
Sbjct: 121 CLNAMQDAVQIDVTVKHRIGVDRQTEYQSVADFVGTLAAKTACKTYIVHARNAWLDGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR +P LKY++VY LK++FP+LEIIINGGI T ++I HL ++DGVM+GRE Y NP +
Sbjct: 181 KENRDVPPLKYDYVYRLKQEFPDLEIIINGGIHTNEQIAAHLAHVDGVMVGRECYHNPMI 240
Query: 242 MSNFDLNYYSN 252
M +D +Y +
Sbjct: 241 MRQWDSLFYGD 251
>gi|291615814|ref|YP_003518556.1| DusA [Pantoea ananatis LMG 20103]
gi|386081194|ref|YP_005994719.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis PA13]
gi|291150844|gb|ADD75428.1| DusA [Pantoea ananatis LMG 20103]
gi|354990375|gb|AER34499.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis PA13]
Length = 331
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 183/250 (73%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ +E
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGDYLAYSEQE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ A + ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 HPVALQLGGSDPAALAQCAALAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADG 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
IKAMRD V+I +TVK RIGIDD +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVDIPVTVKTRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L I INGG+KT +E HL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPQLTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRELFGR 250
>gi|188025481|ref|ZP_02958806.2| hypothetical protein PROSTU_00565 [Providencia stuartii ATCC 25827]
gi|188023335|gb|EDU61375.1| tRNA dihydrouridine synthase A [Providencia stuartii ATCC 25827]
Length = 336
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 182/248 (73%), Gaps = 2/248 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L F+ EE P+A
Sbjct: 15 NINRFSVAPMLDWTDRHCRYFHRLLSKNTLLYTEMVTTGAIIHGKGDYLAFSEEEQPVAL 74
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM+
Sbjct: 75 QLGGSDPEALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMQ 134
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKI 187
D V I +TVK RIGID+ +SY+F+ DF+ TVS+ GC FI+HAR A+L L+PK+NR+I
Sbjct: 135 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDTVSTKGGCEMFIIHARKAWLSGLSPKENREI 194
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DFP L + INGGIKT +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 195 PPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKEHLRHLDGVMVGREAYQNPSILTAVDN 254
Query: 248 NYY-SNLP 254
+ S LP
Sbjct: 255 QLFDSQLP 262
>gi|332284448|ref|YP_004416359.1| coproporphyrinogen III oxidase [Pusillimonas sp. T7-7]
gi|330428401|gb|AEC19735.1| coproporphyrinogen III oxidase [Pusillimonas sp. T7-7]
Length = 416
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 210/350 (60%), Gaps = 37/350 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+ E+ YL AL D+E +LP+I R++ +IFIGGGTPSL+S LD +L + L
Sbjct: 68 ELPEQDYLTALQADLEQALPLIWGRQVVSIFIGGGTPSLLSGQALDQMLAMFRACLNLLP 127
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP T E +F Y+ G+NR+S+GIQSF+N+ L LGR HD++QA+ A+EIA
Sbjct: 128 DAEITLEANPGTVEAGRFADYAASGVNRISLGIQSFDNRALEALGRIHDAEQARAAVEIA 187
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
++ + NLD++YALP Q++ + DL+ A+ + HLSLY LT+EPNT F KYPP ++P
Sbjct: 188 QKVVDRVNLDIMYALPGQSIDDCAQDLHQAMSFQTGHLSLYHLTLEPNTVFAKYPP-TVP 246
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D +A MQD I ++ YE+SAY+++G +HNLNYW+FGDYL
Sbjct: 247 DDDTSAAMQDLIADATAAGGWERYEVSAYARSGQRCRHNLNYWEFGDYLGIGPGAHGKLS 306
Query: 871 -------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLF 905
G+ +A+ ++++ K L FEFMLN LRLK G + +
Sbjct: 307 FHDKIVRQAKLKNPSSWMKKAMLRDGSHLAEDRQVDWKDLGFEFMLNVLRLKHGVPRSSY 366
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955
ERTG +I I L+ A GLL+ ++ ++ T G FLNDLQ FL+
Sbjct: 367 IERTGQSILAIAPALERAVARGLLEPGHERLQATEHGWQFLNDLQAEFLD 416
>gi|164685730|ref|ZP_01945619.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165918518|ref|ZP_02218604.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
gi|164601240|gb|EAX33765.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165917764|gb|EDR36368.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
Length = 328
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 173/237 (72%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ISIAPMM TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A Q
Sbjct: 4 RRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQ 63
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
VG ++P+ LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM
Sbjct: 64 VGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCVAAMSA 123
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V I ++VK R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P
Sbjct: 124 EVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPP 183
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L Y VY LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD
Sbjct: 184 LAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFD 240
>gi|449146249|ref|ZP_21777038.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
gi|449078095|gb|EMB49040.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
Length = 327
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++CI AMR V
Sbjct: 66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECIAAMRSVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K++FP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRNFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVD 241
>gi|398999893|ref|ZP_10702626.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM18]
gi|398130947|gb|EJM20276.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM18]
Length = 339
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVSIPVTVKHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 201 LRYDVAARLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|297582262|ref|ZP_06944177.1| TIM-barrel protein [Vibrio cholerae RC385]
gi|297533520|gb|EFH72366.1| TIM-barrel protein [Vibrio cholerae RC385]
Length = 327
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241
>gi|37681156|ref|NP_935765.1| tRNA-dihydrouridine synthase A [Vibrio vulnificus YJ016]
gi|326423833|ref|NP_760320.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
gi|38604852|sp|Q8CWK7.2|DUSA_VIBVU RecName: Full=tRNA-dihydrouridine synthase A
gi|37199907|dbj|BAC95736.1| NifR3/Smm1 family protein [Vibrio vulnificus YJ016]
gi|319999203|gb|AAO09847.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
Length = 326
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 182/256 (71%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V
Sbjct: 66 GSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 SNLPQYKIPTRIDIIN 266
+ Q I R I+
Sbjct: 246 GS--QSPIKKRRQIVE 259
>gi|425898589|ref|ZP_18875180.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892157|gb|EJL08635.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 333
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 15 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHERFLRHDESEHPLALQ 74
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 75 LGGSTPADLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRD 134
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 135 AVSIPVTVKHRIGINGRDSYEELCDFVGQVREAGCTSFTVHARIAILEGLSPKENRDIPP 194
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 195 LRYDVAARLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 254
Query: 250 YSN 252
+ +
Sbjct: 255 FGS 257
>gi|15640406|ref|NP_230033.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121590952|ref|ZP_01678272.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121729744|ref|ZP_01682184.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|147675235|ref|YP_001218647.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O395]
gi|153820423|ref|ZP_01973090.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|153823513|ref|ZP_01976180.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|153827262|ref|ZP_01979929.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|153830467|ref|ZP_01983134.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|227080591|ref|YP_002809142.1| tRNA-dihydrouridine synthase A [Vibrio cholerae M66-2]
gi|227116785|ref|YP_002818681.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229504962|ref|ZP_04394473.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229508600|ref|ZP_04398096.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229516011|ref|ZP_04405462.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229526966|ref|ZP_04416363.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229606339|ref|YP_002876987.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254286198|ref|ZP_04961157.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|254851689|ref|ZP_05241039.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|298501275|ref|ZP_07011073.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|360037019|ref|YP_004938782.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740257|ref|YP_005332226.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|418331085|ref|ZP_12942036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|418347786|ref|ZP_12952523.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|421327606|ref|ZP_15778123.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|424025899|ref|ZP_17765520.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
gi|38605061|sp|Q9KUX9.1|DUSA_VIBCH RecName: Full=tRNA-dihydrouridine synthase A
gi|9654797|gb|AAF93552.1| NifR3/Smm1 family protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547178|gb|EAX57305.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121628529|gb|EAX61013.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|126509034|gb|EAZ71628.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|126518958|gb|EAZ76181.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|146317118|gb|ABQ21657.1| TIM-barrel protein, yjbN family [Vibrio cholerae O395]
gi|148874069|gb|EDL72204.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|149738810|gb|EDM53152.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|150423613|gb|EDN15555.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|227008479|gb|ACP04691.1| NifR3/Smm1 family protein [Vibrio cholerae M66-2]
gi|227012235|gb|ACP08445.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229335578|gb|EEO01058.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229346914|gb|EEO11881.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229354368|gb|EEO19295.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229358020|gb|EEO22936.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229368994|gb|ACQ59417.1| tRNA dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254847394|gb|EET25808.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|297540029|gb|EFH76092.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|356421741|gb|EHH75232.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|356448253|gb|EHI01033.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|356648173|gb|AET28228.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793767|gb|AFC57238.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|395933128|gb|EJH43870.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|408881554|gb|EKM20431.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
Length = 327
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241
>gi|409201210|ref|ZP_11229413.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas flavipulchra JG1]
Length = 337
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 175/236 (74%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AI+ K L F A E P+A Q+
Sbjct: 20 RRFSVAPMLDWTDRHCRTFHRKLTKHAVLYTEMITTGAIIFGKGDYLAFGAHELPVALQL 79
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA+ AK +++GY E+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+
Sbjct: 80 GGSDPKALAECAKRAEQYGYSEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKAE 139
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + + GC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 140 VNIPVTVKTRIGIDEQDSYEFLTALIEASQAVGCDDFIIHARKAWLQGLSPKENREIPPL 199
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LKKD+P+L I INGG+KT +E HL ++DGVM+GREAY NPF++S D
Sbjct: 200 DYPRVYQLKKDYPDLHISINGGVKTLEECQHHLAHLDGVMVGREAYSNPFMLSQVD 255
>gi|269961484|ref|ZP_06175848.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
gi|269833861|gb|EEZ87956.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
Length = 369
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 178/245 (72%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 49 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 108
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 109 GSNAADLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 168
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 169 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 228
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 229 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKDHLQHLDGVMIGREAYQSPYLLASVDQELF 288
Query: 251 -SNLP 254
SN P
Sbjct: 289 GSNAP 293
>gi|29654227|ref|NP_819919.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 493]
gi|29541493|gb|AAO90433.1| NifR3-like protein [Coxiella burnetii RSA 493]
Length = 353
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 176/244 (72%), Gaps = 5/244 (2%)
Query: 8 YNK----RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
YN+ R+ISIAPMM TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ E
Sbjct: 22 YNRLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPE 81
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHP+A QVG ++P+ LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+D
Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVAD 141
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+ AM V I ++VK R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P
Sbjct: 142 CVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPA 201
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR +P L Y VY LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP
Sbjct: 202 ENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFC 261
Query: 243 SNFD 246
+ FD
Sbjct: 262 AAFD 265
>gi|319778260|ref|YP_004129173.1| radical SAM protein [Taylorella equigenitalis MCE9]
gi|397662040|ref|YP_006502740.1| putative oxygen-independent coprophorphyrinogen III oxidasee
[Taylorella equigenitalis ATCC 35865]
gi|317108284|gb|ADU91030.1| Radical SAM family enzyme,coproporphyrinogen III oxidase like
protein [Taylorella equigenitalis MCE9]
gi|394350219|gb|AFN36133.1| putative oxygen-independent coprophorphyrinogen III oxidasee
[Taylorella equigenitalis ATCC 35865]
gi|399114761|emb|CCG17556.1| putative oxygen-independent coprophorphyrinogen III oxidasee
[Taylorella equigenitalis 14/56]
Length = 394
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/349 (46%), Positives = 210/349 (60%), Gaps = 37/349 (10%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
+ E++YL+AL D+ +LP I R I ++FIGGGTPS++S +D +L+ ++ LL
Sbjct: 45 LPEEQYLKALEEDLIYNLPHIWGRSIISVFIGGGTPSILSTKTIDRILQILRNLLNISSE 104
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
I ITLEANP+TFE EKF +Y GINRLSIGIQSFNNK L LGR HDS+ A A EIAK
Sbjct: 105 IEITLEANPATFESEKFAAYRSSGINRLSIGIQSFNNKNLQALGRVHDSQSAINACEIAK 164
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
++F+NFNLD++YALP+Q+L E D+ A+Q HLSLY LT+EPNT F K+PP +PS
Sbjct: 165 KFFDNFNLDIMYALPDQSLKECEEDIILALQLESKHLSLYQLTLEPNTLFSKFPPKILPS 224
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKIE- 881
DE M++ I L +K YEISAY+ G++ HN NYW+FGDY+G KI
Sbjct: 225 EDEIIDMEEMIHELTALRGFKRYEISAYALDGWQCIHNRNYWEFGDYVGIGPGAHSKISF 284
Query: 882 -----------------KKC-------------------LIFEFMLNALRLKDGFSPNLF 905
KKC L FEFMLNALRLKDG N F
Sbjct: 285 PDKIIREVREKHPIKWIKKCMSDQKGAQIIEHRELKVEELPFEFMLNALRLKDGVPTNYF 344
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ER G+++ + +K A GLL +N K T G +LN+LQ+IFL
Sbjct: 345 EERCGVSMAVALPNIKRAVDKGLLSQNPLEFKATDLGWKYLNNLQEIFL 393
>gi|90581341|ref|ZP_01237137.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
gi|90437451|gb|EAS62646.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
Length = 346
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/250 (52%), Positives = 181/250 (72%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ + ++ S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N EE
Sbjct: 18 VTGDFPMQRFSVAPMLDWTDRHCRYFHRLMSKEALLYTEMVTTGAIIHGKGDFLAYNEEE 77
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G + P LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C
Sbjct: 78 HPLALQLGGSNPIDLARCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGEAELVAQC 137
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
+ AMRD V+I +TVK RIGIDD +SY+F++DF+ VS GC F +HAR A+L L+PK
Sbjct: 138 VTAMRDVVDIPVTVKTRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPK 197
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DF L + INGGIKT +E++ HL ++DGVM+GREAY++P+LM
Sbjct: 198 ENREIPPLDYPRVYQLKQDFAHLTMAINGGIKTFEEMEEHLKHMDGVMVGREAYQSPYLM 257
Query: 243 SNFDLNYYSN 252
+ D + +
Sbjct: 258 AEVDQRLFGS 267
>gi|378775268|ref|YP_005177511.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
gi|356597816|gb|AET16542.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
Length = 327
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 177/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVNAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DF L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFAHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>gi|119776187|ref|YP_928927.1| tRNA-dihydrouridine synthase A [Shewanella amazonensis SB2B]
gi|119768687|gb|ABM01258.1| TIM-barrel protein, yjbN family [Shewanella amazonensis SB2B]
Length = 326
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 177/236 (75%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R S+APM++ TDRH R F R +++ + LYTEM TT AIL K L +N EEHP+A Q+
Sbjct: 7 RTFSVAPMLDWTDRHYRYFARLMSKEALLYTEMVTTGAILHGKGDYLAYNQEEHPLALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA AK+ + GYDE+N+N GCPS+RVQNG FGA LM +P LV++C+ AMR
Sbjct: 67 GGSDPKDLATCAKLAEARGYDEVNINVGCPSDRVQNGRFGACLMAEPKLVAECVDAMRQQ 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVK RIGID+ +SY F+ DFV TVS+AGC TFI+HAR A+L+ L+PK+NR+IP L
Sbjct: 127 VSVPVTVKTRIGIDEQDSYGFLTDFVETVSAAGCDTFIIHARKAWLQGLSPKENREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+D+P+L I INGG+ + ++ HL +DGVM+GREAY+NP+++++ D
Sbjct: 187 DYERVYQLKRDYPQLSISINGGVTSIEQAKTHLAQLDGVMVGREAYQNPYILASVD 242
>gi|332289875|ref|YP_004420727.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
gi|330432771|gb|AEC17830.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
Length = 326
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 179/246 (72%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
M + + + S+APM++ T RHCR FHRQ +R++ LYTEM T AI+ K L ++
Sbjct: 1 MTTTQIDFYRGRFSVAPMLDWTTRHCRFFHRQFSRHTLLYTEMVTAPAIIYAKYDHLLYH 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
+E P+A Q+G ++P++LA A + ++ GY E+NLN GCPS+RVQNGFFGA LM K LV
Sbjct: 61 PQELPLALQLGGSDPQQLADCAALAEQRGYSEVNLNVGCPSDRVQNGFFGACLMAKADLV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+ CI AM+ + I +TVK RIGIDD++SY+F+ DFV V++ GC+ FI+HAR A+L L+
Sbjct: 121 AQCIDAMQQRINIPVTVKTRIGIDDLDSYEFLCDFVEKVAAVGCQDFIIHARKAWLSGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L Y VY LK+DFP+L+I INGGIKT +EI HL Y+DGVM+GREAY+NP
Sbjct: 181 PKENREIPPLDYARVYQLKRDFPQLKIAINGGIKTIEEIQQHLQYVDGVMVGREAYQNPQ 240
Query: 241 LMSNFD 246
L+ D
Sbjct: 241 LLGYID 246
>gi|311105398|ref|YP_003978251.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans A8]
gi|310760087|gb|ADP15536.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans A8]
Length = 326
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 173/250 (69%), Gaps = 4/250 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M+++TDRHCR FHR + + LYTEM TT A+L GN + LDF+ EHP+A Q+G +EP
Sbjct: 1 MIDVTDRHCRFFHRLLAPRARLYTEMITTGALLHGNVERHLDFDEAEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA SA++ +KWGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +T
Sbjct: 61 ALAHSARLGKKWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMQDAVDIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+G+D SY+FVRDFVG V GCR FI HARNA LK L PK NR+IP L+Y V
Sbjct: 121 VKHRLGLDYDESYEFVRDFVGKVYDTGCRVFIAHARNAVLKGLTPKDNREIPPLRYEVVR 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+ ++NGG+ + DGVMLGR A+ P ++S L + P
Sbjct: 181 QLKRDFPDCTFVLNGGLADAGQSVRAAGDFDGVMLGRAAWHTPRVLSEVSLQLW---PSL 237
Query: 257 KIPTRIDIIN 266
++P+ +++
Sbjct: 238 RLPSDAQVVD 247
>gi|70729357|ref|YP_259094.1| tRNA-dihydrouridine synthase A [Pseudomonas protegens Pf-5]
gi|68343656|gb|AAY91262.1| tRNA dihydrouridine synthase A [Pseudomonas protegens Pf-5]
Length = 336
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ + L ++ EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKHTLLYTEMVTTGALLNGDHERFLRYHPSEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSTPADLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYAELCDFVGQVMEAGCSSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFP+LEII+NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKADFPQLEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|212710291|ref|ZP_03318419.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|422020548|ref|ZP_16367086.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
gi|212687098|gb|EEB46626.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|414101185|gb|EKT62786.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
Length = 341
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 183/253 (72%), Gaps = 2/253 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
I N + S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EE
Sbjct: 15 IGGYKNLNRFSVAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIYGKGDYLAYSEEE 74
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP++ Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 75 HPVSLQLGGSDPVALAQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADC 134
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPK 182
+KAMRD V I +TVK RIGID+ +SY+F+ +F+ TVS+ G C FI+HAR A+L L+PK
Sbjct: 135 VKAMRDVVSIPVTVKTRIGIDEQDSYEFLCEFIDTVSTKGDCEMFIIHARKAWLSGLSPK 194
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGGIKT +E HL Y+DGVM+GREAY+NP ++
Sbjct: 195 ENREIPPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKEHLKYLDGVMVGREAYQNPSIL 254
Query: 243 SNFDLNYY-SNLP 254
+ D + N+P
Sbjct: 255 TAVDNQLFDENMP 267
>gi|440289524|ref|YP_007342289.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440049046|gb|AGB80104.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 331
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 69 LQLGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGRGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKTHLQHMDGVMVGREAYQNPGILATVD 248
>gi|157148055|ref|YP_001455374.1| tRNA-dihydrouridine synthase A [Citrobacter koseri ATCC BAA-895]
gi|157085260|gb|ABV14938.1| hypothetical protein CKO_03862 [Citrobacter koseri ATCC BAA-895]
Length = 345
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YPAHRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGI + +E HL ++DGVM+GREAY+NP ++++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGITSLEEAKAHLEHMDGVMIGREAYQNPGILASVD 262
>gi|90408335|ref|ZP_01216499.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
gi|90310566|gb|EAS38687.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
Length = 333
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/248 (56%), Positives = 177/248 (71%), Gaps = 4/248 (1%)
Query: 3 MINSKYNKRKIS----IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLD 58
MINSK NK+ +S +APM++ TDRHCR FHR +++ + LYTEM TT AIL K L
Sbjct: 1 MINSKENKKHVSNRFSVAPMLDWTDRHCRHFHRILSKETLLYTEMVTTGAILYGKGDYLQ 60
Query: 59 FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL 118
EHP+A Q+G LAK+A ++ GYDEINLN GCPS+RVQNG FGA LM +P
Sbjct: 61 KGDAEHPVALQLGGFAAVDLAKAALAGKERGYDEINLNIGCPSDRVQNGRFGACLMAEPE 120
Query: 119 LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK 178
LV+D + AMRD+ + ITVK RIGIDD++SY+F+ DF+ V + GC FI+HAR A+L
Sbjct: 121 LVADAVAAMRDATGLPITVKTRIGIDDLDSYEFLCDFISKVHAKGCDNFIIHARKAWLSG 180
Query: 179 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKN 238
L+PKQNR +P L ++ VY LKKDFP+L I INGGIKT E HL ++DGVMLGREAY N
Sbjct: 181 LSPKQNRDVPPLDHDRVYQLKKDFPQLMIAINGGIKTLDECKTHLQHLDGVMLGREAYAN 240
Query: 239 PFLMSNFD 246
P+L+S D
Sbjct: 241 PYLLSQVD 248
>gi|432878609|ref|ZP_20095891.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
gi|431416474|gb|ELG98960.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
Length = 345
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 176/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y+ + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YSPSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|407692865|ref|YP_006817654.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
gi|407388922|gb|AFU19415.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
Length = 323
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 180/243 (74%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ +++ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E
Sbjct: 1 MQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPSE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQ
Sbjct: 121 IKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQ 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLNISINGGIKTVDEIKQHLAFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 EID 242
>gi|37528192|ref|NP_931537.1| tRNA-dihydrouridine synthase A [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787629|emb|CAE16736.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 345
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/241 (55%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
KY+ + S+APM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI
Sbjct: 22 KYSLNRFSVAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEQEHPI 81
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AKI Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KA
Sbjct: 82 ALQLGGSDPQALAHCAKIAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAELVADCVKA 141
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVG-TVSSAGCRTFIVHARNAFLKKLNPKQNR 185
M+D V + +TVK RIGID+ +SY F+ DF+ V +GC F +HAR A+L L+PK+NR
Sbjct: 142 MQDVVNVPVTVKTRIGIDEQDSYQFLCDFIDIVVQHSGCNIFTMHARKAWLSGLSPKENR 201
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
+IP L Y VY LKKDFP+L I INGGIK+ +E HL ++DG+M+GREAY+NP +++
Sbjct: 202 EIPPLDYPRVYQLKKDFPQLTIAINGGIKSLEEAKQHLQHVDGIMIGREAYQNPSILAQV 261
Query: 246 D 246
D
Sbjct: 262 D 262
>gi|56752036|ref|YP_172737.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 6301]
gi|81300875|ref|YP_401083.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 7942]
gi|56686995|dbj|BAD80217.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169756|gb|ABB58096.1| TIM-barrel protein, yjbN family [Synechococcus elongatus PCC 7942]
Length = 343
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 173/242 (71%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQV 70
++S+APM++ TDRHCR F RQI+R + LYTEM QAI G++ LD++ +EHP+A QV
Sbjct: 18 RLSVAPMLDRTDRHCRYFLRQISRRTLLYTEMIVAQAIQYGDRARLLDYDPQEHPVALQV 77
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P+ LA A+I + WGYDEINLN GCPS+RVQ G FGA LM +P V+ C++AMR +
Sbjct: 78 GGDNPQWLADCARIAEDWGYDEINLNVGCPSDRVQKGQFGACLMARPEQVAQCVEAMRSA 137
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVKHRIGIDD +SY+ ++DFV V+ +GC F VHAR A+L+ L+PKQNR IP L
Sbjct: 138 STLPVTVKHRIGIDDRDSYEELQDFVRIVAESGCDRFSVHARKAWLQGLDPKQNRTIPPL 197
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ VY LK+DFP+L I INGGI + HL +D VM+GR Y NP+L++ D Y
Sbjct: 198 RYDVVYQLKQDFPQLVIEINGGILDLDQAQQHLQQVDAVMMGRAIYDNPYLLAAADAQLY 257
Query: 251 SN 252
+
Sbjct: 258 GD 259
>gi|426410390|ref|YP_007030489.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. UW4]
gi|426268607|gb|AFY20684.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. UW4]
Length = 331
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|339053234|ref|ZP_08647986.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721563|gb|EGG99595.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
Length = 351
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/257 (51%), Positives = 189/257 (73%), Gaps = 3/257 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++ IAPM++ +DRH R F R I++++ LY+EM TT AI+ G++ H L F+ E P+A Q
Sbjct: 35 RRLCIAPMLDWSDRHYRYFMRLISQHALLYSEMVTTGAIIHGDRDHLLGFDNHEQPVALQ 94
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA+ +KI + GY+EINLN GCPS+RVQNG FGA LM KP LV+ C+++M+
Sbjct: 95 LGGSSPSDLAECSKIGEDRGYNEINLNVGCPSDRVQNGAFGACLMAKPELVAACLESMQR 154
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGIDD++SY+ ++ F+ VS +GC TFI+HAR AFL+ L+PK+NR IP
Sbjct: 155 AVNIPVTVKHRIGIDDLDSYELLQRFIEIVSHSGCSTFIIHARKAFLQGLSPKENRDIPP 214
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
LKY++VY +K+ FP LEIIINGGIK+ E HL +DGVM+GREAY NP+ ++ D
Sbjct: 215 LKYDWVYQIKEQFPHLEIIINGGIKSLTESQKHLEQVDGVMIGREAYHNPYSLAQADAQL 274
Query: 250 YSNLPQYKIPTRIDIIN 266
+ + ++I +R DI+
Sbjct: 275 FDD--HHQIASRHDILQ 289
>gi|388544792|ref|ZP_10148078.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M47T1]
gi|388277101|gb|EIK96677.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M47T1]
Length = 336
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/244 (54%), Positives = 172/244 (70%), Gaps = 1/244 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TDRHCR F R ++ + LYTEM TT A+L G+ L + EHP+A
Sbjct: 17 SRRFSVAPMMDWTDRHCRFFLRLLSANALLYTEMVTTGALLNGDAARFLRHDDTEHPLAL 76
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + P LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P+LV+DC+KAMR
Sbjct: 77 QLGGSTPADLAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMGHPVLVADCVKAMR 136
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR IP
Sbjct: 137 DAVSIPVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENRDIP 196
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 197 PLRYDVAAQLKADFPDLEIVLNGGIKTMAECQAHLGTFDGVMLGREAYHNPYLLATVDQE 256
Query: 249 YYSN 252
+ +
Sbjct: 257 LFGS 260
>gi|386017996|ref|YP_005936297.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis AJ13355]
gi|327396079|dbj|BAK13501.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis AJ13355]
Length = 331
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 182/250 (72%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ SIAPM++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ +E
Sbjct: 1 MTDTFSSQRFSIAPMLDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGDYLAYSEQE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ A + ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 HPVALQLGGSDPAALAQCAALAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADG 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
IKAMRD V+I +TVK RIGIDD +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVDIPVTVKTRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L I INGG+KT E HL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPQLTIAINGGVKTLGEAKTHLQHLDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
+ D +
Sbjct: 241 AQVDRELFGR 250
>gi|424924029|ref|ZP_18347390.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens R124]
gi|404305189|gb|EJZ59151.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens R124]
Length = 331
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAAQLKADFPELEIVLNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|421482941|ref|ZP_15930520.1| tRNA-dihydrouridine synthase A [Achromobacter piechaudii HLE]
gi|400198745|gb|EJO31702.1| tRNA-dihydrouridine synthase A [Achromobacter piechaudii HLE]
Length = 326
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/254 (51%), Positives = 177/254 (69%), Gaps = 4/254 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGSVSRHLDFDEAEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V+I +T
Sbjct: 61 ALAQSAKLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMRDAVDIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+G+D SY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 121 VKHRLGLDYEESYAFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVK 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK DFP+ ++NGG+ ++ + DGVMLGR A+ P ++S L + P
Sbjct: 181 QLKVDFPDCTFVLNGGLADAEQSVRAADEFDGVMLGRAAWHTPRVLSEVSLQLW---PSV 237
Query: 257 KIPTRIDIINLDSE 270
++P+ +++ +E
Sbjct: 238 RLPSDAQVVDAMTE 251
>gi|293604638|ref|ZP_06687040.1| tRNA dihydrouridine synthase A [Achromobacter piechaudii ATCC
43553]
gi|292816969|gb|EFF76048.1| tRNA dihydrouridine synthase A [Achromobacter piechaudii ATCC
43553]
Length = 326
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/254 (51%), Positives = 177/254 (69%), Gaps = 4/254 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M+++TDRHCR FHR + + LYTEM TT A+ GN LDF+ EHP+A Q+G +EP
Sbjct: 1 MIDVTDRHCRFFHRLLAPRARLYTEMITTGALQHGNIPRHLDFDEAEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +T
Sbjct: 61 ALAQSAKLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMQDAVDIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+G+D NSY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 121 VKHRLGLDYENSYSFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVK 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+ ++NGG+ + + DGVMLGR A+ P ++S L + P
Sbjct: 181 QLKQDFPDCTFVLNGGLADADQSVSAADEFDGVMLGRAAWHTPRVLSEVSLRLW---PSV 237
Query: 257 KIPTRIDIINLDSE 270
++P+ +++ +E
Sbjct: 238 RLPSDAQVVDAMTE 251
>gi|350529472|ref|ZP_08908413.1| tRNA-dihydrouridine synthase A [Vibrio rotiferianus DAT722]
Length = 326
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V
Sbjct: 66 GSNPADLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKSVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 SN 252
+
Sbjct: 246 GS 247
>gi|167032718|ref|YP_001667949.1| tRNA-dihydrouridine synthase A [Pseudomonas putida GB-1]
gi|166859206|gb|ABY97613.1| TIM-barrel protein, yjbN family [Pseudomonas putida GB-1]
Length = 336
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-KKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L N + L +A EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKQTLLYTEMVTTGALLHNDAQRFLRHDASEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEDAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVSTPVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKADFPDLEIVLNGGIKTLDECQKHLETFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+++
Sbjct: 258 FAS 260
>gi|419798034|ref|ZP_14323477.1| tRNA dihydrouridine synthase A [Neisseria sicca VK64]
gi|385696375|gb|EIG26864.1| tRNA dihydrouridine synthase A [Neisseria sicca VK64]
Length = 337
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/252 (54%), Positives = 184/252 (73%), Gaps = 2/252 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNA 61
M + R++S+APM++ TDRH R RQITR +WLY+EM + AI+ G+K L FN
Sbjct: 1 MTQASLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNE 60
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E P+A Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV+
Sbjct: 61 GEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVA 120
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLN 180
DC+ AM+D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+
Sbjct: 121 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR +P LKY++VY LKK+FPELEIIINGGI T + I HL ++DGVM+GREAY NP
Sbjct: 181 PKENRDVPPLKYDYVYRLKKEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPM 240
Query: 241 LMSNFDLNYYSN 252
+M +D +Y +
Sbjct: 241 VMHEWDRLFYGD 252
>gi|123444030|ref|YP_001008000.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090991|emb|CAL13874.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 342
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ S LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 17 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQSLLYTEMVTTGAIIHGKADYLAYSEQDHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 77 LQLGGSDPQALAHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEASLVADCIKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDELDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 197 VPPLDYARVYQLKRDFPTLTIAINGGVKTLAEAKEHLKYVDGVMMGREAYQNPTILTQVD 256
>gi|422298082|ref|ZP_16385704.1| TIM-barrel protein, yjbN family [Pseudomonas avellanae BPIC 631]
gi|407990333|gb|EKG32439.1| TIM-barrel protein, yjbN family [Pseudomonas avellanae BPIC 631]
Length = 339
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 176/245 (71%), Gaps = 1/245 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R+++ + LYTEM TT A+L G+++ L + EHP+A
Sbjct: 20 SRRFSVAPMMDWTDHHCRYFMRRLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLAL 79
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 80 QLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMR 139
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELSDFVGTVHEAGCQSFTVHARIAILEGLSPKENRDIP 199
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 200 PLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQ 259
Query: 249 YYSNL 253
+ ++
Sbjct: 260 LFGSV 264
>gi|161831190|ref|YP_001596802.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 331]
gi|161763057|gb|ABX78699.1| tRNA dihydrouridine synthase A [Coxiella burnetii RSA 331]
Length = 328
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 173/237 (72%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ISIAPMM TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A Q
Sbjct: 4 RRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQ 63
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
VG ++P+ LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM
Sbjct: 64 VGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSA 123
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V I ++VK R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P
Sbjct: 124 EVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPP 183
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L Y VY LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD
Sbjct: 184 LAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFD 240
>gi|90414453|ref|ZP_01222429.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
gi|90324458|gb|EAS41017.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
Length = 346
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
NS Y ++ S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L FN EE+
Sbjct: 19 NSGYPMQRFSVAPMLDWTDRHCRYFHRLLSDNALLYTEMVTTGAIIHGKGDFLTFNEEEN 78
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+
Sbjct: 79 PVALQLGGSNPVDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEADLVALCV 138
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
+MR+ V+I +TVK RIGID+ +SY F+ DF+GTV+ +GC F VHAR A+LK L+PK+
Sbjct: 139 SSMREVVDIPVTVKTRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKE 198
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIKT E++ HLN++DGVM+GREAY+NP+LM+
Sbjct: 199 NREIPPLDYPRVYQLKRDFPNLIMAINGGIKTFDEMEEHLNHMDGVMVGREAYQNPYLMA 258
Query: 244 NFD 246
D
Sbjct: 259 EVD 261
>gi|386390228|ref|ZP_10075022.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
gi|385693538|gb|EIG24179.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
Length = 326
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 177/235 (75%), Gaps = 1/235 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ T RHCR FHRQ ++++ LYTEM T AIL K L+++ E+P+A Q+G
Sbjct: 9 RFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAILHAKYDLLEYDPAENPVALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK+LA AK++++ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V
Sbjct: 69 GSNPKQLAHCAKLVEERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+I +TVKHRIGIDD++SY+F+ DF+ V A FIVHAR A+L L+PK+NR+IP L
Sbjct: 129 QIPVTVKHRIGIDDLDSYEFLCDFIEKV-QAYSNDFIVHARKAWLSGLSPKENREIPPLD 187
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D
Sbjct: 188 YERVYQLKRDFPHLNISINGGIKTIEEIKYHLQFVDGVMVGREAYQNPSLLGEID 242
>gi|365846158|ref|ZP_09386663.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
gi|364574270|gb|EHM51735.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
Length = 332
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 177/245 (72%), Gaps = 1/245 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FPAHRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 70 LQLGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGHGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++ D
Sbjct: 190 IPPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGMLTAVD 249
Query: 247 LNYYS 251
++
Sbjct: 250 REIFA 254
>gi|89093370|ref|ZP_01166319.1| NIFR3-like protein [Neptuniibacter caesariensis]
gi|89082349|gb|EAR61572.1| NIFR3-like protein [Oceanospirillum sp. MED92]
Length = 328
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 179/242 (73%), Gaps = 1/242 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ ++APMM+ TDRHCR FHR +++ + LYTEM TT A++ L +N EE P+A Q
Sbjct: 10 RRFTVAPMMDWTDRHCRYFHRILSQNAVLYTEMVTTGALIHAEADRFLRYNREEQPVALQ 69
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P+ LA+ K+ + +GY+E+NLN GCPS+RVQN GA LM P LVS+C++ M+
Sbjct: 70 LGGSNPEDLAQCTKMAEDYGYNEVNLNVGCPSDRVQNNMIGACLMAHPQLVSECLEKMQA 129
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V+I +TVKHR GIDD++SY+ + FV TV +GC+ FI+HAR A L+ L+PK+NR IP
Sbjct: 130 AVDIPVTVKHRQGIDDMDSYEELVQFVDTVRQSGCKVFIIHARKAILQGLSPKENRDIPP 189
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
LKY +VY +K++FPELE+ INGGIKT E HL ++DGVMLGREAY+NP+L+++ D +
Sbjct: 190 LKYEWVYQIKQEFPELEVHINGGIKTIDECHTHLQHVDGVMLGREAYQNPYLLADVDREF 249
Query: 250 YS 251
Y
Sbjct: 250 YG 251
>gi|375004122|ref|ZP_09728457.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353073460|gb|EHB39225.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 332
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTISINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|323495575|ref|ZP_08100649.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
gi|323319456|gb|EGA72393.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
Length = 333
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
SKY + SIAPM++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEH
Sbjct: 6 TSKYAANRFSIAPMLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGDFLAYNQEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+
Sbjct: 66 PVALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
+MR+ V+I +TVK RIGIDD +SY+F+ DFV V+ GC F +HAR A+L L+PK+
Sbjct: 126 ASMREVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVAEKGGCEQFTIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y Y LKKDF L I +NGG+KT ++ +HL ++DGVM+GREAY+NP+L++
Sbjct: 186 NREIPPLDYPRAYQLKKDFSHLNIAVNGGVKTLEDSLVHLEHLDGVMVGREAYQNPYLLA 245
Query: 244 NFD 246
D
Sbjct: 246 QVD 248
>gi|431927810|ref|YP_007240844.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas stutzeri RCH2]
gi|431826097|gb|AGA87214.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas stutzeri RCH2]
Length = 334
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 178/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 16 RRFSVAPMMDWTDRHCRYFLRQLSRHALLYTEMVTTGALLHGDAQRFLRHDESEHPLALQ 75
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 76 LGGSVPAELAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 135
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +++TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P
Sbjct: 136 AVGVEVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKQNREVPP 195
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEII+NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 196 LRYDIAAQLKQDFPDLEIILNGGIKTLDECRAHLQTFDGVMLGREAYHNPYLLARVDHEL 255
Query: 250 YSN 252
+ +
Sbjct: 256 FGS 258
>gi|51594726|ref|YP_068917.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
32953]
gi|186893729|ref|YP_001870841.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis PB1/+]
gi|51588008|emb|CAH19612.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186696755|gb|ACC87384.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis PB1/+]
Length = 345
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 130/241 (53%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
+Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPV 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 76 ALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNR 185
MRD+V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR
Sbjct: 136 MRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENR 195
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 196 EVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQV 255
Query: 246 D 246
D
Sbjct: 256 D 256
>gi|22124488|ref|NP_667911.1| tRNA-dihydrouridine synthase A [Yersinia pestis KIM10+]
gi|45440326|ref|NP_991865.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Microtus
str. 91001]
gi|108809958|ref|YP_653874.1| tRNA-dihydrouridine synthase A [Yersinia pestis Antiqua]
gi|108813513|ref|YP_649280.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|145600902|ref|YP_001164978.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides F]
gi|150260637|ref|ZP_01917365.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162420841|ref|YP_001605835.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165926732|ref|ZP_02222564.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936521|ref|ZP_02225089.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|166010496|ref|ZP_02231394.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213918|ref|ZP_02239953.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402469|ref|ZP_02307926.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418732|ref|ZP_02310485.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426194|ref|ZP_02317947.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167467147|ref|ZP_02331851.1| tRNA-dihydrouridine synthase A [Yersinia pestis FV-1]
gi|218927522|ref|YP_002345397.1| tRNA-dihydrouridine synthase A [Yersinia pestis CO92]
gi|229836573|ref|ZP_04456739.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|229840181|ref|ZP_04460340.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842263|ref|ZP_04462418.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903999|ref|ZP_04519112.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|270489016|ref|ZP_06206090.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294502383|ref|YP_003566445.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|384120870|ref|YP_005503490.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|384124748|ref|YP_005507362.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|384137704|ref|YP_005520406.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|384413316|ref|YP_005622678.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544763|ref|ZP_15042958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|420550067|ref|ZP_15047702.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|420555518|ref|ZP_15052553.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|420561163|ref|ZP_15057465.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|420566204|ref|ZP_15062011.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|420571833|ref|ZP_15067127.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|420577178|ref|ZP_15071958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|420582517|ref|ZP_15076821.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|420587659|ref|ZP_15081464.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|420592968|ref|ZP_15086241.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|420598657|ref|ZP_15091342.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|420604186|ref|ZP_15096265.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|420609527|ref|ZP_15101117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|420614776|ref|ZP_15105797.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|420620227|ref|ZP_15110548.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|420625278|ref|ZP_15115125.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|420630435|ref|ZP_15119808.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|420635564|ref|ZP_15124394.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|420641163|ref|ZP_15129439.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|420646323|ref|ZP_15134173.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|420651967|ref|ZP_15139232.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|420657414|ref|ZP_15144148.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|420662754|ref|ZP_15148912.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|420667746|ref|ZP_15153426.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|420673050|ref|ZP_15158250.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|420678549|ref|ZP_15163255.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|420683778|ref|ZP_15167956.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|420688949|ref|ZP_15172551.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|420694760|ref|ZP_15177632.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|420700014|ref|ZP_15182229.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|420706178|ref|ZP_15187107.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|420711464|ref|ZP_15191904.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|420716826|ref|ZP_15196660.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|420722477|ref|ZP_15201468.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|420728124|ref|ZP_15206486.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|420733219|ref|ZP_15211075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|420738685|ref|ZP_15216012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|420743925|ref|ZP_15220705.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|420749802|ref|ZP_15225638.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|420754870|ref|ZP_15230177.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|420760975|ref|ZP_15235026.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|420766146|ref|ZP_15239708.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|420771193|ref|ZP_15244223.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|420776529|ref|ZP_15249041.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|420781987|ref|ZP_15253829.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|420787436|ref|ZP_15258603.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|420792880|ref|ZP_15263509.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|420798052|ref|ZP_15268152.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|420803401|ref|ZP_15272969.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|420808579|ref|ZP_15277657.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|420814376|ref|ZP_15282843.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|420819503|ref|ZP_15287498.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|420824592|ref|ZP_15292045.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|420830402|ref|ZP_15297293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|420835232|ref|ZP_15301644.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|420840359|ref|ZP_15306289.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|420845966|ref|ZP_15311368.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|420851300|ref|ZP_15316133.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|420856895|ref|ZP_15320840.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|421761744|ref|ZP_16198544.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
gi|38604954|sp|Q8ZJ14.1|DUSA_YERPE RecName: Full=tRNA-dihydrouridine synthase A
gi|21957280|gb|AAM84162.1|AE013659_6 hypothetical protein y0574 [Yersinia pestis KIM10+]
gi|45435182|gb|AAS60742.1| Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Yersinia pestis biovar Microtus str. 91001]
gi|108777161|gb|ABG19680.1| hypothetical protein YPN_3353 [Yersinia pestis Nepal516]
gi|108781871|gb|ABG15929.1| hypothetical protein YPA_3968 [Yersinia pestis Antiqua]
gi|115346133|emb|CAL19001.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212598|gb|ABP42005.1| hypothetical protein YPDSF_3655 [Yersinia pestis Pestoides F]
gi|149290045|gb|EDM40122.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162353656|gb|ABX87604.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165915637|gb|EDR34246.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921355|gb|EDR38579.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990586|gb|EDR42887.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204893|gb|EDR49373.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962726|gb|EDR58747.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048157|gb|EDR59565.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054905|gb|EDR64707.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229679769|gb|EEO75872.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|229690573|gb|EEO82627.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696547|gb|EEO86594.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706257|gb|EEO92265.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|262360466|gb|ACY57187.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|262364412|gb|ACY60969.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|270337520|gb|EFA48297.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294352842|gb|ADE63183.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|320013820|gb|ADV97391.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852833|gb|AEL71386.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|391432821|gb|EIQ94225.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|391433794|gb|EIQ95074.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|391436489|gb|EIQ97440.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|391448818|gb|EIR08596.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|391449521|gb|EIR09240.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|391451830|gb|EIR11293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|391464830|gb|EIR23075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|391466407|gb|EIR24480.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|391468483|gb|EIR26354.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|391482090|gb|EIR38566.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|391482864|gb|EIR39279.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|391483187|gb|EIR39575.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|391497049|gb|EIR51943.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|391497975|gb|EIR52787.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|391501490|gb|EIR55892.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|391512760|gb|EIR66051.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|391514298|gb|EIR67417.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|391516099|gb|EIR69025.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|391528314|gb|EIR80144.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|391531127|gb|EIR82643.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|391532381|gb|EIR83778.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|391545340|gb|EIR95443.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|391547026|gb|EIR96962.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|391547813|gb|EIR97671.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|391561446|gb|EIS09971.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|391562618|gb|EIS11012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|391564746|gb|EIS12922.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|391576828|gb|EIS23328.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|391577637|gb|EIS24031.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|391588895|gb|EIS33856.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|391592175|gb|EIS36646.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|391592909|gb|EIS37280.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|391605850|gb|EIS48668.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|391607726|gb|EIS50292.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|391608296|gb|EIS50802.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|391620412|gb|EIS61571.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|391621267|gb|EIS62329.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|391629763|gb|EIS69645.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|391631857|gb|EIS71442.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|391643090|gb|EIS81290.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|391645886|gb|EIS83713.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|391649002|gb|EIS86453.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|391655599|gb|EIS92321.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|391662436|gb|EIS98366.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|391667553|gb|EIT02874.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|391669189|gb|EIT04347.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|391672966|gb|EIT07731.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|391686879|gb|EIT20254.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|391688326|gb|EIT21552.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|391689662|gb|EIT22768.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|391701023|gb|EIT33065.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|391704128|gb|EIT35810.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|391704880|gb|EIT36495.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|391715593|gb|EIT46117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|391720457|gb|EIT50478.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|391721025|gb|EIT51002.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|391731554|gb|EIT60242.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|391734126|gb|EIT62419.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|391737417|gb|EIT65304.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|411178066|gb|EKS48078.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
Length = 345
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 130/241 (53%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
+Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPV 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 76 ALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNR 185
MRD+V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR
Sbjct: 136 MRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENR 195
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 196 EVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQV 255
Query: 246 D 246
D
Sbjct: 256 D 256
>gi|398971892|ref|ZP_10683849.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM30]
gi|398138034|gb|EJM27067.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM30]
Length = 331
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAAQLKADFPELEIVLNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|170077369|ref|YP_001734007.1| dihydrouridine synthase A [Synechococcus sp. PCC 7002]
gi|169885038|gb|ACA98751.1| Dihydrouridine synthase A [Synechococcus sp. PCC 7002]
Length = 344
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 179/255 (70%), Gaps = 1/255 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
IN+ +S+APMM+ TDRH R R+ITR + LYTEM TTQAI+ G++ LDF+A
Sbjct: 5 INTVVCPHLLSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDAA 64
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHPI+ Q+G + PK+LA+ AK+ + WGYDEINLN GCPS RVQ G FGA LMT+P LV+D
Sbjct: 65 EHPISLQLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVAD 124
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+ AM+ +V I +TVKHRIG+D+ +SY + F+ VS+ GC F VHAR A+L+ L+PK
Sbjct: 125 CVAAMQGAVNIPVTVKHRIGVDEQDSYADLCRFIEIVSATGCDRFSVHARKAWLQGLSPK 184
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR +P L+Y VY LK+DFP L I INGGI T + I HL +D VM+GR AY NP+L
Sbjct: 185 ENRTVPPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHLTQVDAVMVGRAAYDNPYLF 244
Query: 243 SNFDLNYYSNLPQYK 257
+ D + Y Q K
Sbjct: 245 ATVDRDIYGEAIQPK 259
>gi|238789911|ref|ZP_04633691.1| tRNA-dihydrouridine synthase A [Yersinia frederiksenii ATCC 33641]
gi|238721984|gb|EEQ13644.1| tRNA-dihydrouridine synthase A [Yersinia frederiksenii ATCC 33641]
Length = 343
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 130/240 (54%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 17 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA AK+ ++ GY+E+NLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 77 LQLGGSDPQALAHCAKLAEQRGYNEVNLNVGCPSDRVQNGRFGACLMAEASLVADCIKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 197 VPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKYLDGVMMGREAYQNPSILTQVD 256
>gi|422972569|ref|ZP_16975396.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
gi|371597806|gb|EHN86625.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
Length = 345
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYNEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|194432327|ref|ZP_03064615.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|416286014|ref|ZP_11648112.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|417692540|ref|ZP_12341734.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
gi|194419530|gb|EDX35611.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|320179045|gb|EFW54004.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|332083541|gb|EGI88761.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
Length = 339
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 177/242 (73%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLVEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|293394136|ref|ZP_06638436.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
gi|291423114|gb|EFE96343.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
Length = 349
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 174/242 (71%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR FHR +++ + LYTEM TT AI+ K L ++ EEHPIA Q+G
Sbjct: 27 RFSIAPMLDWTDRHCRYFHRLLSKETLLYTEMVTTGAIVHGKGDYLAYSEEEHPIALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V
Sbjct: 87 GSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGID+ +SY F+ DF+ TV+ G C F +HAR A+L L+PKQNR++P L
Sbjct: 147 SIPVTVKTRIGIDEQDSYAFLCDFIETVAGRGECEMFTIHARKAWLSGLSPKQNREVPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP ++ D +
Sbjct: 207 DYPRVYQLKRDFPALTIAINGGVKTLDEARQHLQHLDGVMMGREAYQNPGILLQVDRELF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|331650053|ref|ZP_08351126.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|419863045|ref|ZP_14385606.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|427807268|ref|ZP_18974335.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|432394795|ref|ZP_19637605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|432614135|ref|ZP_19850284.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443615558|ref|YP_007379414.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
gi|331040998|gb|EGI13155.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|388343546|gb|EIL09478.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|412965450|emb|CCK49383.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|430912545|gb|ELC33718.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|431145456|gb|ELE47106.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443420066|gb|AGC84970.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
Length = 345
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
Query: 247 LNYYSN 252
+ +
Sbjct: 263 REIFGS 268
>gi|405363402|ref|ZP_11026356.1| tRNA dihydrouridine synthase A [Chondromyces apiculatus DSM 436]
gi|397089810|gb|EJJ20709.1| tRNA dihydrouridine synthase A [Myxococcus sp. (contaminant ex DSM
436)]
Length = 344
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 185/255 (72%), Gaps = 3/255 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDR+CR FHR ++R++ LYTEM TT A++ G++ L ++A EHP+A Q+G
Sbjct: 22 LSVAPMMDWTDRNCRYFHRLLSRHTLLYTEMVTTGAVIHGDRDRLLGYDAAEHPVALQLG 81
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP+ LA+SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMRD+V
Sbjct: 82 GSEPEALAESARIGEQWGYDEINLNVGCPSDRVQSGRFGACLMAEPELVARLVGAMRDAV 141
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI ID++ + + F+ TVS+AGC FIVHAR A+L+ L+P++NR +P L+
Sbjct: 142 NIPVTVKSRIAIDELEEWPTLEGFIRTVSAAGCTRFIVHARKAWLQGLSPRENRDVPPLR 201
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK +FP L+I INGGIKT L ++DGVM+GR Y+NP+L++ D ++
Sbjct: 202 YDLVHRLKAEFPHLDISINGGIKTLDAAAEQLQHVDGVMMGRAPYENPYLLAEADRRFFG 261
Query: 252 NLPQYKIPTRIDIIN 266
+P R +++
Sbjct: 262 A--TTPVPQRHEVVE 274
>gi|338533471|ref|YP_004666805.1| tRNA-dihydrouridine synthase A [Myxococcus fulvus HW-1]
gi|337259567|gb|AEI65727.1| tRNA-dihydrouridine synthase A [Myxococcus fulvus HW-1]
Length = 332
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 184/255 (72%), Gaps = 3/255 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDR+CR FHR ++R++ LYTEM TT A+L G+++ L ++A EHP+A Q+G
Sbjct: 9 LSVAPMMDWTDRNCRYFHRLLSRHTLLYTEMVTTGAVLHGDRERLLGYDAAEHPVALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA+SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V
Sbjct: 69 GSEPAALAESARIGEQWGYDEINLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI ID++ + + F+ VS+AGC FIVHAR A+L+ L+P++NR +P L+
Sbjct: 129 SIPVTVKSRIAIDELEEWPTLEGFIRKVSAAGCTRFIVHARKAWLQGLSPRENRDVPPLR 188
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK +FP L+I INGGIKT L ++DGVM+GR Y+NP+L++ D ++
Sbjct: 189 YDLVHRLKAEFPHLDISINGGIKTLDAAAEQLQHVDGVMMGRAPYENPYLLAEADRRFFG 248
Query: 252 NLPQYKIPTRIDIIN 266
+P R D++
Sbjct: 249 A--TTPVPQRHDVVE 261
>gi|432916245|ref|ZP_20121217.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|432923572|ref|ZP_20126126.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
gi|431450457|gb|ELH30943.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|431451570|gb|ELH32042.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
Length = 345
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 20 TGSYWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 79
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 139
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 140 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 199
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 200 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 259
Query: 244 NFDLNYYSN 252
D + +
Sbjct: 260 AVDREIFGS 268
>gi|417675401|ref|ZP_12324824.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|420350227|ref|ZP_14851584.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
gi|332084336|gb|EGI89539.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|391262910|gb|EIQ21921.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
Length = 345
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 177/242 (73%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLVEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|26250830|ref|NP_756870.1| tRNA-dihydrouridine synthase A [Escherichia coli CFT073]
gi|91213570|ref|YP_543556.1| tRNA-dihydrouridine synthase A [Escherichia coli UTI89]
gi|110644384|ref|YP_672114.1| tRNA-dihydrouridine synthase A [Escherichia coli 536]
gi|117626314|ref|YP_859637.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|191172024|ref|ZP_03033569.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215489385|ref|YP_002331816.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218561117|ref|YP_002394030.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218692332|ref|YP_002400544.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222158756|ref|YP_002558895.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|227886947|ref|ZP_04004752.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|237703603|ref|ZP_04534084.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|306815840|ref|ZP_07449985.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|331660615|ref|ZP_08361547.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|386602090|ref|YP_006103596.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|386606612|ref|YP_006112912.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|386621742|ref|YP_006141322.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|386632022|ref|YP_006151742.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|386636942|ref|YP_006156661.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|386641700|ref|YP_006108498.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|387619365|ref|YP_006122387.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|387831956|ref|YP_003351893.1| hypothetical protein ECSF_3903 [Escherichia coli SE15]
gi|417088162|ref|ZP_11954891.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|417287891|ref|ZP_12075177.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|417664694|ref|ZP_12314273.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|419702916|ref|ZP_14230498.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|419913185|ref|ZP_14431627.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|419943137|ref|ZP_14459707.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|422751074|ref|ZP_16804984.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|422757189|ref|ZP_16811010.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|422840511|ref|ZP_16888482.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|425280507|ref|ZP_18671715.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|432360522|ref|ZP_19603729.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|432365322|ref|ZP_19608471.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|432383964|ref|ZP_19626884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|432384979|ref|ZP_19627884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|432395454|ref|ZP_19638250.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|432409140|ref|ZP_19651838.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|432419670|ref|ZP_19662233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|432429809|ref|ZP_19672261.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|432439028|ref|ZP_19681400.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|432454298|ref|ZP_19696515.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|432468458|ref|ZP_19710529.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|432473417|ref|ZP_19715450.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|432502626|ref|ZP_19744371.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|432506961|ref|ZP_19748675.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|432516455|ref|ZP_19753666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|432526543|ref|ZP_19763651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|432556581|ref|ZP_19793283.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|432566482|ref|ZP_19803018.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|432571368|ref|ZP_19807864.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|432580849|ref|ZP_19817270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|432585834|ref|ZP_19822212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|432590647|ref|ZP_19826984.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|432595351|ref|ZP_19831649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|432605507|ref|ZP_19841712.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|432648737|ref|ZP_19884518.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|432653723|ref|ZP_19889458.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|432658305|ref|ZP_19893997.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|432696934|ref|ZP_19932121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|432701581|ref|ZP_19936721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|432708455|ref|ZP_19943527.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|432715923|ref|ZP_19950944.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|432721212|ref|ZP_19956145.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|432725610|ref|ZP_19960516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|432730372|ref|ZP_19965236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|432739392|ref|ZP_19974116.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|432748040|ref|ZP_19982698.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|432757024|ref|ZP_19991564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|432761921|ref|ZP_19996390.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|432776393|ref|ZP_20010654.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|432781392|ref|ZP_20015599.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|432790092|ref|ZP_20024216.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|432818859|ref|ZP_20052577.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|432824988|ref|ZP_20058649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|432841898|ref|ZP_20075340.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|432891895|ref|ZP_20104374.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|432896081|ref|ZP_20107358.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|432908008|ref|ZP_20116270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|432941090|ref|ZP_20138784.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|432969653|ref|ZP_20158546.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|432976292|ref|ZP_20165121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|432978938|ref|ZP_20167733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|432987914|ref|ZP_20176620.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|432988561|ref|ZP_20177237.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|432993273|ref|ZP_20181900.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|432997732|ref|ZP_20186308.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|433003009|ref|ZP_20191513.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|433010268|ref|ZP_20198676.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|433031017|ref|ZP_20218853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|433041086|ref|ZP_20228666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|433060598|ref|ZP_20247621.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|433075407|ref|ZP_20262033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|433080280|ref|ZP_20266789.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|433084999|ref|ZP_20271436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|433089802|ref|ZP_20276152.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|433098903|ref|ZP_20285061.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|433103672|ref|ZP_20289732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|433108334|ref|ZP_20294285.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|433113347|ref|ZP_20299186.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|433118006|ref|ZP_20303777.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|433122736|ref|ZP_20308383.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|433127708|ref|ZP_20313240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|433141781|ref|ZP_20327010.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|433146709|ref|ZP_20331831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|433151733|ref|ZP_20336721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|433156303|ref|ZP_20341220.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|433166089|ref|ZP_20350807.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|433171087|ref|ZP_20355695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|433185864|ref|ZP_20370089.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|433190879|ref|ZP_20374956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|433200840|ref|ZP_20384713.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|433210269|ref|ZP_20393923.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|433215106|ref|ZP_20398670.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
gi|38604877|sp|Q8FB30.1|DUSA_ECOL6 RecName: Full=tRNA-dihydrouridine synthase A
gi|26111261|gb|AAN83444.1|AE016770_244 Hypothetical protein yjbN [Escherichia coli CFT073]
gi|91075144|gb|ABE10025.1| hypothetical protein YjbN [Escherichia coli UTI89]
gi|110345976|gb|ABG72213.1| hypothetical protein YjbN (putative tRNA-dihydrouridine synthase)
[Escherichia coli 536]
gi|115515438|gb|ABJ03513.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|190907789|gb|EDV67383.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215267457|emb|CAS11910.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218367886|emb|CAR05681.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218429896|emb|CAR10723.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222035761|emb|CAP78506.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|226901515|gb|EEH87774.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|227836088|gb|EEJ46554.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|281181113|dbj|BAI57443.1| conserved hypothetical protein [Escherichia coli SE15]
gi|294489479|gb|ADE88235.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|305850815|gb|EFM51271.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|307556192|gb|ADN48967.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|307629096|gb|ADN73400.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|312948626|gb|ADR29453.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|323950409|gb|EGB46290.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|323954491|gb|EGB50275.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|330908368|gb|EGH36887.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|331051657|gb|EGI23696.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|333972243|gb|AEG39048.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|355349206|gb|EHF98415.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|355422921|gb|AER87118.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|355427841|gb|AER92037.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|371606200|gb|EHN94798.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|380345931|gb|EIA34237.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|386248676|gb|EII94848.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|388390010|gb|EIL51513.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|388421812|gb|EIL81413.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|408196580|gb|EKI21859.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|430872230|gb|ELB95844.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|430882587|gb|ELC05666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|430902607|gb|ELC24464.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|430911578|gb|ELC32859.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|430919738|gb|ELC40659.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|430925616|gb|ELC46282.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|430948977|gb|ELC68558.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|430958081|gb|ELC76679.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|430959226|gb|ELC77560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|430987409|gb|ELD03948.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|430989354|gb|ELD05810.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|430994902|gb|ELD11214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|431025256|gb|ELD38367.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|431034284|gb|ELD46225.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|431037366|gb|ELD48352.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|431046760|gb|ELD56853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|431095821|gb|ELE01422.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|431104526|gb|ELE08901.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|431112847|gb|ELE16528.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|431124246|gb|ELE26898.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|431125135|gb|ELE27565.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|431134773|gb|ELE36716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|431135289|gb|ELE37204.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|431143486|gb|ELE45211.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|431177078|gb|ELE77016.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|431186358|gb|ELE85920.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|431186944|gb|ELE86476.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|431229533|gb|ELF26177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|431239218|gb|ELF33863.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|431250335|gb|ELF44396.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|431254028|gb|ELF47504.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|431269735|gb|ELF61040.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|431278346|gb|ELF69339.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|431279632|gb|ELF70586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|431287423|gb|ELF78233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|431288818|gb|ELF79574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|431298492|gb|ELF88117.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|431304244|gb|ELF92776.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|431333140|gb|ELG20355.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|431333524|gb|ELG20711.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|431334325|gb|ELG21487.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|431372059|gb|ELG57755.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|431376984|gb|ELG62123.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|431399550|gb|ELG82955.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|431425633|gb|ELH07702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|431427690|gb|ELH09633.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|431432970|gb|ELH14645.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|431459094|gb|ELH39410.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|431484661|gb|ELH64335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|431488968|gb|ELH68597.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|431492246|gb|ELH71848.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|431500550|gb|ELH79564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|431501518|gb|ELH80499.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|431513071|gb|ELH91157.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|431520010|gb|ELH97439.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|431520438|gb|ELH97764.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|431520774|gb|ELH98094.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|431538844|gb|ELI14824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|431547062|gb|ELI21444.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|431564779|gb|ELI37946.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|431580986|gb|ELI53441.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|431591980|gb|ELI62887.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|431596849|gb|ELI66790.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|431599306|gb|ELI69013.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|431611417|gb|ELI80695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|431614400|gb|ELI83554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|431622651|gb|ELI91338.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|431623350|gb|ELI92022.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|431629513|gb|ELI97875.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|431637669|gb|ELJ05723.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|431639117|gb|ELJ06988.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|431654258|gb|ELJ21317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|431656329|gb|ELJ23316.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|431666311|gb|ELJ32953.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|431668920|gb|ELJ35359.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|431682291|gb|ELJ48058.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|431682726|gb|ELJ48375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|431700396|gb|ELJ65375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|431700574|gb|ELJ65551.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|431715577|gb|ELJ79724.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|431727576|gb|ELJ91331.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|431730578|gb|ELJ94141.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
Length = 331
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 HTVYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 AVD 248
>gi|422783599|ref|ZP_16836383.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
gi|323975321|gb|EGB70424.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
Length = 345
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 177/242 (73%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAETRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD++SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDLDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|389685150|ref|ZP_10176474.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis O6]
gi|388550803|gb|EIM14072.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis O6]
Length = 336
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHERFLRHDESEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSTPADLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYAELCDFVGQVREAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|417841940|ref|ZP_12488036.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
gi|341948036|gb|EGT74673.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
Length = 327
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G +EP++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSEPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|226326586|ref|ZP_03802104.1| hypothetical protein PROPEN_00436 [Proteus penneri ATCC 35198]
gi|225205011|gb|EEG87365.1| tRNA dihydrouridine synthase A [Proteus penneri ATCC 35198]
Length = 344
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/256 (53%), Positives = 188/256 (73%), Gaps = 2/256 (0%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
+N + KYN + S+APM++ TDRHCR F RQ+++ + LYTEM TT AI+ K L ++
Sbjct: 16 VNSNSKKYNLNRFSVAPMLDWTDRHCRYFFRQLSKNTLLYTEMVTTGAIIHGKGDYLKYS 75
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EEHP++ Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV
Sbjct: 76 EEEHPVSLQLGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGDAQLV 135
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKL 179
++C+KAMRD V+I +TVK RIGIDD +SY+F+ DF+ TVS C TFI+HAR A+L L
Sbjct: 136 ANCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLCDFIETVSRDNNCDTFIIHARKAWLSGL 195
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR++P L Y VY LK+DF L + INGGIK+ +E HL ++DGVM+GREAY+NP
Sbjct: 196 SPKENREVPPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAKEHLKHMDGVMVGREAYQNP 255
Query: 240 FLMSNFDLNYYSN-LP 254
++++ D + N LP
Sbjct: 256 SILAHVDHELFDNQLP 271
>gi|153949073|ref|YP_001402722.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
31758]
gi|152960568|gb|ABS48029.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
31758]
Length = 345
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/250 (53%), Positives = 182/250 (72%), Gaps = 2/250 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
+Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPV 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 76 ALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNR 185
MRD+V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR
Sbjct: 136 MRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENR 195
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 196 EVPPLDYERVYQLKCDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQV 255
Query: 246 DLNYY-SNLP 254
D + SN P
Sbjct: 256 DRELFDSNAP 265
>gi|423142707|ref|ZP_17130345.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049298|gb|EHY67193.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 339
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/236 (57%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V
Sbjct: 81 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRYMDGVMVGREAYQNPGILAAVD 256
>gi|432551644|ref|ZP_19788379.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
gi|431087965|gb|ELD93877.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
Length = 345
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
Query: 247 LNYYSN 252
+ +
Sbjct: 263 REIFGS 268
>gi|320155187|ref|YP_004187566.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
gi|319930499|gb|ADV85363.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
Length = 326
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/256 (51%), Positives = 181/256 (70%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLSYNQEEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ M++ V
Sbjct: 66 GSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVATMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 SNLPQYKIPTRIDIIN 266
+ Q I R I+
Sbjct: 246 GS--QSPIKKRRQIVE 259
>gi|229525073|ref|ZP_04414478.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
gi|229338654|gb|EEO03671.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
Length = 327
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPAALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241
>gi|432443665|ref|ZP_19685986.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|432448740|ref|ZP_19691034.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|433016399|ref|ZP_20204716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|433025981|ref|ZP_20213940.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|433326392|ref|ZP_20403233.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|450196390|ref|ZP_21892861.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
gi|430960263|gb|ELC78419.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|430970425|gb|ELC87497.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|431525308|gb|ELI02105.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|431529138|gb|ELI05841.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|432345486|gb|ELL39989.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|449315504|gb|EMD05646.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
Length = 331
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 HTVYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 AVD 248
>gi|422829122|ref|ZP_16877290.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
gi|371610279|gb|EHN98808.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
Length = 345
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ KE HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLKEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|338739151|ref|YP_004676113.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
gi|337759714|emb|CCB65545.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
Length = 334
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 3/256 (1%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHP 65
+Y + S+APMM+ TDRHCR+FHR++T+ + LYTEM T A++ G+++ L F+AEEHP
Sbjct: 2 QYQAHRFSVAPMMDWTDRHCRVFHRRLTKRALLYTEMVTADAVIHGDRERLLGFSAEEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
IA Q+G ++P KLA +A+I GYDEINLN GCPS+RVQ G FGA LM +P LV+ C+
Sbjct: 62 IALQLGGSDPAKLATAARIGADLGYDEINLNVGCPSDRVQEGRFGACLMAEPELVAACVS 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
AMR+S + ++VK RIGIDD ++ + F+ V+ GC +F+VHAR A+LK L+PK+NR
Sbjct: 122 AMRESQPVPVSVKCRIGIDDQDAEADLTRFIDVVADTGCTSFVVHARKAWLKGLSPKENR 181
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK P+L I+INGGI+T + + HL ++DGVMLGR AY+NP+++++
Sbjct: 182 EVPPLDYQRVYRLKARRPDLTIVINGGIETIADAETHLEHVDGVMLGRAAYQNPYILADV 241
Query: 246 DLNYYSNLPQYKIPTR 261
D +++ PTR
Sbjct: 242 DRAIFAD--ASAPPTR 255
>gi|256821438|ref|YP_003145401.1| oxygen-independent coproporphyrinogen III oxidase [Kangiella
koreensis DSM 16069]
gi|256794977|gb|ACV25633.1| oxygen-independent coproporphyrinogen III oxidase [Kangiella
koreensis DSM 16069]
Length = 410
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 220/370 (59%), Gaps = 37/370 (10%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + I+ + +I E++Y++ LL+D+E LP++ R++H+IFIGGGTPSL S
Sbjct: 21 KCPYCDFNSHGIKQLGGLDDIPEQEYIDRLLVDLEQELPLVWGRRLHSIFIGGGTPSLFS 80
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
G+D L+ ++ + F+ +I IT+EANP TFE E+F + G+NRLSIG+QSF+ ++L
Sbjct: 81 AEGMDRLISGVRARIPFEGDIEITMEANPGTFEAERFAGFRQAGVNRLSIGVQSFDARHL 140
Query: 743 NILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 801
+LGR H+ +QA A E A Q F++FNLDL++ LP+QT+ + + DL AI P H+S
Sbjct: 141 ELLGRVHNPEQAIAAAEFAHQAGFSSFNLDLMHGLPDQTIEQALSDLQTAIDLKPQHISW 200
Query: 802 YSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG-YESQHN 860
Y LTIEPNT F++ PP ++P +D +Q++ +LL+ + Y YE+SAY++ + SQHN
Sbjct: 201 YQLTIEPNTLFYQQPP-TLPIDDTLWTIQEQGQALLQQHSYGQYEVSAYAREPKFRSQHN 259
Query: 861 LNYWKFGDYLG----------------------------------NSIAKSKKIEKKCLI 886
LNYW+FGDYLG I S+ I L
Sbjct: 260 LNYWQFGDYLGIGAGAHGKITRLDLEQIQRTTKSRHPKDYLQKSVADIRTSQPIPAPELP 319
Query: 887 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 946
FEFMLNALRL DG F +RTG+ + I+ + A GLL + I+PT G FL
Sbjct: 320 FEFMLNALRLLDGVPTTYFQQRTGLLLSDIQPAINEAIADGLLHNSKDRIEPTEKGSLFL 379
Query: 947 NDLQQIFLNN 956
N+L Q F+ +
Sbjct: 380 NELLQRFIKD 389
>gi|194426795|ref|ZP_03059348.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|194415131|gb|EDX31400.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|195183268|dbj|BAG66809.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H-]
Length = 345
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEAHGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|237797725|ref|ZP_04586186.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806004|ref|ZP_04592708.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331020575|gb|EGI00632.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331027114|gb|EGI07169.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 339
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 131/244 (53%), Positives = 176/244 (72%), Gaps = 1/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R ++R++ LYTEM TT A+L G++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRLLSRHALLYTEMVTTGALLHGDRDRFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVVIPVTVKHRIGINGRDSYAELCDFVGTVQEAGCQSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQVFDGVMLGREAYHNPYLLAQVDKQL 260
Query: 250 YSNL 253
+ ++
Sbjct: 261 FGSM 264
>gi|284800241|ref|ZP_05985987.2| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
gi|284795603|gb|EFC50950.1| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
Length = 317
Score = 290 bits (741), Expect = 4e-75, Method: Composition-based stats.
Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRH R RQITR +WLY+EM + A++ G+K L FN E P+A Q+G ++P
Sbjct: 1 MLDWTDRHYRFMARQITRNAWLYSEMVNSGAVVYGDKDRFLSFNEGEQPVALQLGGSDPH 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA + K + +GY+E+NLNCGCPS RVQ G FGA LM LV+DC+ AM+D+VEI +T
Sbjct: 61 DLAIATKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVADCLNAMQDAVEIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 195
VKHRIG+D Y V DFVGT+ CRTFIVHARNA+L L+PK+NR++P LKY +V
Sbjct: 121 VKHRIGVDRQTEYQVVADFVGTLREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYV 180
Query: 196 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
Y LK+DFP+LEI+INGGI T +EI HL ++DGVM+GREAY NP LM ++D +Y++
Sbjct: 181 YRLKQDFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPMLMRDWDTMFYND 237
>gi|415797083|ref|ZP_11497925.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
gi|323162189|gb|EFZ48052.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
Length = 330
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 5 TGAYWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 64
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 244
Query: 244 NFDLNYYSN 252
D + +
Sbjct: 245 AVDREIFGS 253
>gi|288937656|ref|YP_003441715.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
gi|288892365|gb|ADC60683.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
Length = 331
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 69 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E L L ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARLQLEHMDGVMVGREAYQNPGILASVD 248
>gi|432619360|ref|ZP_19855456.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
gi|431150292|gb|ELE51349.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
Length = 331
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 HTVYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 AVD 248
>gi|416790530|ref|ZP_11881227.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|416833963|ref|ZP_11900652.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|320644173|gb|EFX13238.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|320665665|gb|EFX32702.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
Length = 339
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 17 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 77 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 197 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 256
Query: 247 LNYYSN 252
+ +
Sbjct: 257 REIFGS 262
>gi|254362517|ref|ZP_04978621.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
gi|153094117|gb|EDN75017.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
Length = 325
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 179/245 (73%), Gaps = 2/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N I Y R S+APM++ T RHCR FHRQ +R + LYTEM T AI+ K L+++
Sbjct: 3 NEIQPFYRGR-FSVAPMLDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDLLEYDP 61
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++ + GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 62 SENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 121
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+VEI +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 122 DCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLTGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y+ VY LK+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP +
Sbjct: 181 KENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEIKQHLQFVDGVMVGREAYQNPSM 240
Query: 242 MSNFD 246
+ D
Sbjct: 241 LGEID 245
>gi|340363631|ref|ZP_08685954.1| tRNA dihydrouridine synthase A [Neisseria macacae ATCC 33926]
gi|339885310|gb|EGQ75039.1| tRNA dihydrouridine synthase A [Neisseria macacae ATCC 33926]
Length = 337
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 185/253 (73%), Gaps = 2/253 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
+M + R++S+APM++ TDRH R RQITR +WLY+EM + AI+ G+K L FN
Sbjct: 3 HMTQASLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFN 62
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
E P+A Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV
Sbjct: 63 EGEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLV 122
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKL 179
+DC+ AM+D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L
Sbjct: 123 ADCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGL 182
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR +P LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP
Sbjct: 183 SPKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNP 242
Query: 240 FLMSNFDLNYYSN 252
+M +D +Y +
Sbjct: 243 MVMHEWDRLFYGD 255
>gi|452745003|ref|ZP_21944841.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
gi|452086843|gb|EME03228.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
Length = 325
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 179/245 (73%), Gaps = 2/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N I Y R S+APM++ T RHCR FHRQ +R + LYTEM T AI+ K L+++
Sbjct: 3 NEIQPFYRGR-FSVAPMLDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDLLEYDP 61
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++ + GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 62 SENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 121
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+VEI +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 122 DCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLTGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y+ VY LK+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP +
Sbjct: 181 KENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEIKQHLQFVDGVMVGREAYQNPSM 240
Query: 242 MSNFD 246
+ D
Sbjct: 241 LGEID 245
>gi|419325896|ref|ZP_13867574.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
gi|378159970|gb|EHX20968.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
Length = 345
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEAHGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|374291353|ref|YP_005038388.1| tRNA-dihydrouridine synthase A [Azospirillum lipoferum 4B]
gi|357423292|emb|CBS86142.1| tRNA-dihydrouridine synthase A [Azospirillum lipoferum 4B]
Length = 335
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRHCR FHR ++R + LYTEM TT A+L G+++ L F+A EHP+A Q+G
Sbjct: 8 LSVAPMMDWTDRHCRYFHRLLSRSTLLYTEMVTTGAVLHGDRERLLGFDAAEHPVALQLG 67
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA A+I ++WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V
Sbjct: 68 GSDPADLAACARIAEEWGYDEVNLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAV 127
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI ID++ + + F+ TVS+AGC FIVHAR A+LK L+PK+NR IP L+
Sbjct: 128 SIPVTVKSRIAIDEMEEWPTLDQFIRTVSAAGCSHFIVHARKAWLKGLSPKENRDIPPLR 187
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK ++P+L I INGGI+T E + HL +D VM+GR AY+ P+L+++ D
Sbjct: 188 YDLVHRLKAEYPQLTIAINGGIRTLDEAEEHLGKVDSVMIGRAAYETPYLLADADRRLMG 247
Query: 252 NLP 254
P
Sbjct: 248 GEP 250
>gi|325277336|ref|ZP_08142961.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. TJI-51]
gi|324097526|gb|EGB95747.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. TJI-51]
Length = 336
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 171/243 (70%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L N L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKQTLLYTEMVTTGALLHNDADRFLRHDVSEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEQAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVATPVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKADFPDLEIVLNGGIKTLGECQAHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|242238196|ref|YP_002986377.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech703]
gi|242130253|gb|ACS84555.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech703]
Length = 335
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 178/245 (72%), Gaps = 1/245 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ TDRHCR FHR ++ + LYTEM TT AIL + L +N EEHP+A
Sbjct: 14 FWRGRFSVAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGRGDYLAYNDEEHPLA 73
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ A+I ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AM
Sbjct: 74 LQLGGSDPQALAQCAEIAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAELVADCVDAM 133
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRK 186
R V + +TVK RIGIDD +SYDF+ F+ TV+ GC TFIVHAR A+L L+PK+NR+
Sbjct: 134 RGRVRLPVTVKTRIGIDDQDSYDFLCAFIRTVAERGGCDTFIVHARKAWLSGLSPKENRE 193
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L I INGGIKT ++ HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 IPPLDYPRVYQLKRDFPALTIAINGGIKTLEQAQQHLQHLDGVMVGREAYQNPGVLAQVD 253
Query: 247 LNYYS 251
+
Sbjct: 254 SQLFG 258
>gi|261494145|ref|ZP_05990648.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496014|ref|ZP_05992424.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308264|gb|EEY09557.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310311|gb|EEY11511.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 325
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 179/245 (73%), Gaps = 2/245 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N I Y R S+APM++ T RHCR FHRQ +R + LYTEM T AI+ K L+++
Sbjct: 3 NEIQPFYRGR-FSVAPMLDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDLLEYDP 61
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK++ + GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 62 SENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVA 121
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DCIKAM+D+VEI +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+P
Sbjct: 122 DCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLTGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y+ VY LK+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP +
Sbjct: 181 KENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEIKQHLQFVDGVMVGREAYQNPSM 240
Query: 242 MSNFD 246
+ D
Sbjct: 241 LGEID 245
>gi|437835925|ref|ZP_20845495.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435299608|gb|ELO75734.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 332
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEACGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|416779333|ref|ZP_11876338.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
gi|320638805|gb|EFX08451.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
Length = 339
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 17 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 77 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 197 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 256
Query: 247 LNYYSN 252
+ +
Sbjct: 257 REIFGS 262
>gi|253995544|ref|YP_003047608.1| oxygen-independent coproporphyrinogen III oxidase [Methylotenera
mobilis JLW8]
gi|253982223|gb|ACT47081.1| oxygen-independent coproporphyrinogen III oxidase [Methylotenera
mobilis JLW8]
Length = 385
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 208/348 (59%), Gaps = 35/348 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G + E Y+EAL+ D+ELS P + RKI +IF GGGTPSL S +D +L ++ L +
Sbjct: 38 GELPEAAYVEALIKDLELSTPKVWGRKIKSIFFGGGTPSLFSPEAIDTILSQVRALTPLE 97
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP T +I F Y G+NRLS+GIQSFN YL LGR HD KQA A E+
Sbjct: 98 YDAEITLEANPGTVDIANFAGYKQAGVNRLSLGIQSFNAGYLKALGRIHDDKQAIKAAEL 157
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A F+ NLD++Y LP Q+L++ + D A+Q +P HLS Y LT+EPNT F+ PP ++
Sbjct: 158 ALATFDRVNLDVMYGLPQQSLADALADAKQAVQLNPDHLSFYHLTLEPNTPFYHTPP-NL 216
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQ +I + L + Y++YE SA++KTG +++HNLNYW+FGDYL
Sbjct: 217 PDDDTSAEMQIEIENFLAQHGYEHYETSAFAKTGSQARHNLNYWQFGDYLGIGAGAHSKL 276
Query: 871 ------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFF 906
GN++ + + + L FEFM+NALRL DG LF
Sbjct: 277 SYHDKITRETRPKHPKAYMEKALAGNAVERESIVSQDALGFEFMMNALRLIDGVPLTLFQ 336
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+ TG+N+ ++ +K A++ LL N IKPT G+ +LN+L Q FL
Sbjct: 337 QHTGLNLMTLQPAIKAAQQKKLLTTENGYIKPTLLGQRYLNELLQFFL 384
>gi|332280828|ref|ZP_08393241.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|415814116|ref|ZP_11505746.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|417224959|ref|ZP_12028250.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|417280697|ref|ZP_12067997.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|417605017|ref|ZP_12255574.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|417626327|ref|ZP_12276610.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|417669676|ref|ZP_12319205.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|419319630|ref|ZP_13861420.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|419331777|ref|ZP_13873363.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|419378314|ref|ZP_13919322.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|422373781|ref|ZP_16454079.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|422815584|ref|ZP_16863799.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|432634053|ref|ZP_19869966.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
gi|323171192|gb|EFZ56840.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|324014847|gb|EGB84066.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|332103180|gb|EGJ06526.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|345346319|gb|EGW78649.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|345369877|gb|EGX01857.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|378163273|gb|EHX24226.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|378164171|gb|EHX25118.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|378213172|gb|EHX73490.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|385541035|gb|EIF87847.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|386200007|gb|EIH98998.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|386245026|gb|EII86756.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|397782131|gb|EJK92999.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|431166524|gb|ELE66839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
Length = 345
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|419078276|ref|ZP_13623767.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|419134258|ref|ZP_13679076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|425270107|ref|ZP_18661709.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
gi|377916323|gb|EHU80410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|377969396|gb|EHV32773.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|408179558|gb|EKI06216.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
Length = 345
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|312965642|ref|ZP_07779871.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|417230595|ref|ZP_12032092.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|417758551|ref|ZP_12406606.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|418999881|ref|ZP_13547451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|419004949|ref|ZP_13552451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|419010602|ref|ZP_13558003.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|419011206|ref|ZP_13558576.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|419021249|ref|ZP_13568540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|419026721|ref|ZP_13573927.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|419031864|ref|ZP_13578996.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|419037570|ref|ZP_13584636.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|419042558|ref|ZP_13589567.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|419297634|ref|ZP_13839663.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|419342682|ref|ZP_13884128.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|444972304|ref|ZP_21289626.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
gi|312289616|gb|EFR17507.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|377838052|gb|EHU03178.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|377838136|gb|EHU03260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|377840340|gb|EHU05413.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|377855260|gb|EHU20133.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|377856032|gb|EHU20893.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|377864740|gb|EHU29532.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|377869597|gb|EHU34308.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|377871003|gb|EHU35671.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|377872882|gb|EHU37524.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|377885003|gb|EHU49509.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|378137427|gb|EHW98703.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|378181451|gb|EHX42122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|386205848|gb|EII10355.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|444574947|gb|ELV51205.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
Length = 345
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|399007842|ref|ZP_10710340.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM17]
gi|398119174|gb|EJM08882.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM17]
Length = 339
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHERFLRHDESEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTPADLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V I +TVKHRIGI+ +SY+ + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 VVSIPVTVKHRIGINGRDSYEELCDFVGQVREAGCTSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDVAARLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|375105017|ref|ZP_09751278.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderiales bacterium JOSHI_001]
gi|374665748|gb|EHR70533.1| putative oxygen-independent coproporphyrinogen III oxidase
[Burkholderiales bacterium JOSHI_001]
Length = 426
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 144/347 (41%), Positives = 210/347 (60%), Gaps = 35/347 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
N E++YL+A++ D++ +LP++ R + ++FIGGGTPSL S G++ LL +I+ L
Sbjct: 81 NTTEQRYLDAVIADLDAALPLVWGRPVISMFIGGGTPSLFSPEGINRLLGDIRARLPMLP 140
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+TLEANP TFE E+F +++ G+ RLSIG+QSF++ L +GR HD QA+ A+ A
Sbjct: 141 GAEVTLEANPGTFERERFRAFAQAGVTRLSIGVQSFDDAMLARIGRVHDGAQARAAVAEA 200
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
F+ FN+DL+YALP Q L+ L DL A+ +SPPHLS+Y L+IEPNT F K PP+ +P
Sbjct: 201 AASFDTFNIDLMYALPGQDLAHLDADLATALAFSPPHLSVYHLSIEPNTLFAKQPPV-LP 259
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
D + M D + + YE+SA+++ G+ QHNLNYW+FGDYL
Sbjct: 260 DEDLASQMLDLLVQRTGDAGLSRYEVSAFARPGHRCQHNLNYWQFGDYLGLGAGAHGKLS 319
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G +++ ++ +K L FEFMLNALRL++GF LF +
Sbjct: 320 FPHRVVRQVRWREPAAYMNQALAGTAMSNDDEVARKSLPFEFMLNALRLREGFDLALFRD 379
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
RTG+ + +E L+ A+ GL+ R N+ PT G FL+DLQQ+FL
Sbjct: 380 RTGLPMSAVEPALQQAQSKGLIDRQGDNVVPTERGFDFLSDLQQLFL 426
>gi|432367623|ref|ZP_19610732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|432528952|ref|ZP_19766017.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|432668481|ref|ZP_19904044.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
gi|430890145|gb|ELC12782.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|431058914|gb|ELD68291.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|431215501|gb|ELF13189.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
Length = 345
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|349610782|ref|ZP_08890109.1| hypothetical protein HMPREF1028_02084 [Neisseria sp. GT4A_CT1]
gi|348615781|gb|EGY65291.1| hypothetical protein HMPREF1028_02084 [Neisseria sp. GT4A_CT1]
Length = 340
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 185/253 (73%), Gaps = 2/253 (0%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
+M + R++S+APM++ TDRH R RQITR +WLY+EM + AI+ G+K L FN
Sbjct: 3 HMTQASLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFN 62
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
E P+A Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV
Sbjct: 63 EGEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLV 122
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKL 179
+DC+ AM+D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L
Sbjct: 123 ADCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGL 182
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR +P LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP
Sbjct: 183 SPKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNP 242
Query: 240 FLMSNFDLNYYSN 252
+M +D +Y +
Sbjct: 243 MVMHEWDRLFYGD 255
>gi|153216666|ref|ZP_01950573.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
gi|124114177|gb|EAY32997.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
Length = 327
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/236 (54%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ MR V
Sbjct: 66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVATMRAVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241
>gi|422321779|ref|ZP_16402824.1| hypothetical protein HMPREF0005_02052 [Achromobacter xylosoxidans
C54]
gi|317403413|gb|EFV83926.1| hypothetical protein HMPREF0005_02052 [Achromobacter xylosoxidans
C54]
Length = 327
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 173/250 (69%), Gaps = 4/250 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M+++TDRHCR FHR + + LYTEM TT A+L GN LDF+ EHP+A Q+G +EP
Sbjct: 1 MIDVTDRHCRYFHRLLAPRARLYTEMITTGALLYGNVARHLDFDEAEHPVALQLGGSEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+SA++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+V+I +T
Sbjct: 61 ALAQSARLGQQWGYDEINLNCGCPSERVQKGAFGACLMAEPDLVADCIKAMQDAVDIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+G+D SY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 121 VKHRLGLDYDESYAFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVS 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+ ++NGG+ + DGVMLGR A+ P ++S L + P
Sbjct: 181 QLKRDFPDCVFVLNGGLADAAQSVRAAADFDGVMLGRAAWHTPRVLSEVSLQLW---PSV 237
Query: 257 KIPTRIDIIN 266
++P +++
Sbjct: 238 RLPGDAQVVD 247
>gi|204927346|ref|ZP_03218548.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452122023|ref|YP_007472271.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204324011|gb|EDZ09206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451911027|gb|AGF82833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 332
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|77166407|ref|YP_344932.1| tRNA-dihydrouridine synthase A [Nitrosococcus oceani ATCC 19707]
gi|254435191|ref|ZP_05048698.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
gi|76884721|gb|ABA59402.1| tRNA-U16,U17-dihydrouridine synthase [Nitrosococcus oceani ATCC
19707]
gi|207088302|gb|EDZ65574.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
Length = 337
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 186/256 (72%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
KIS+APMM TDRHCR F R I+ + LYTEM T A++ GN+ L ++ EHP+A Q+
Sbjct: 21 KISVAPMMEWTDRHCRYFLRLISHRALLYTEMVTAGALIHGNRARFLAYHKSEHPLALQL 80
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P++LA A++ + +G+DE+NLN GCPSNRVQ+G FGA LM +P LV++C+ AM +
Sbjct: 81 GGSHPEELALCAQMAEDYGFDEVNLNVGCPSNRVQSGRFGACLMAEPELVAECVAAMAQA 140
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGID+ +SY+ + F+ TV+ AGCRTFI+HAR A+L+ L+PK+NR+ P L
Sbjct: 141 TQIPVTVKTRIGIDEQDSYEALDHFISTVAQAGCRTFIIHARKAWLQGLSPKENREKPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ V +K+DFP+L +IINGGI T +EI HL +DGVM+GR AY NP+L++ D N+Y
Sbjct: 201 RYDVVRTIKQDFPQLTVIINGGITTLEEISEHLELLDGVMIGRAAYHNPYLLAQVDRNFY 260
Query: 251 SNLPQYKIPTRIDIIN 266
+ + TR +II
Sbjct: 261 GDF--HPFLTRHEIIE 274
>gi|417839195|ref|ZP_12485394.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
gi|341954425|gb|EGT80906.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
Length = 329
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLTYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PSLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|322515077|ref|ZP_08068085.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
gi|322118957|gb|EFX91134.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
Length = 323
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 180/243 (74%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ +++ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E
Sbjct: 1 MQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPSE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P +LA AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKANLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D+V+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQ
Sbjct: 121 IKAMQDTVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQ 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L I INGGIKT EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLNISINGGIKTVDEIKQHLVFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 EID 242
>gi|395499877|ref|ZP_10431456.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. PAMC 25886]
Length = 336
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT AIL G+ + L N EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+K M+D
Sbjct: 78 LGGSVPADLAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKGMQD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V +AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYAELCDFVGQVKNAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFPELEII+NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKQDFPELEIILNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|260870808|ref|YP_003237210.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|415823434|ref|ZP_11511809.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|417200988|ref|ZP_12017672.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|417206238|ref|ZP_12019316.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|417594583|ref|ZP_12245268.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|419199876|ref|ZP_13743157.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|419206262|ref|ZP_13749409.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|419224200|ref|ZP_13767105.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|419889320|ref|ZP_14409738.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419893875|ref|ZP_14413826.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|420089152|ref|ZP_14600989.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420094959|ref|ZP_14606505.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|424773293|ref|ZP_18200356.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257767164|dbj|BAI38659.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|323175935|gb|EFZ61527.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|345330857|gb|EGW63320.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|378041616|gb|EHW04075.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|378042064|gb|EHW04516.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|378059387|gb|EHW21587.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|386187447|gb|EIH76266.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|386197721|gb|EIH91920.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|388357917|gb|EIL22415.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|388365760|gb|EIL29536.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|394388842|gb|EJE66080.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394394652|gb|EJE71212.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|421936655|gb|EKT94316.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 345
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|331655869|ref|ZP_08356857.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
gi|331046223|gb|EGI18313.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
Length = 345
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPAL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|153803249|ref|ZP_01957835.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229519914|ref|ZP_04409345.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
gi|124121229|gb|EAY39972.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229343042|gb|EEO08029.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
Length = 327
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/236 (54%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 66 GSNPNDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241
>gi|419212642|ref|ZP_13755697.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|419229763|ref|ZP_13772590.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|419235432|ref|ZP_13778190.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|419240583|ref|ZP_13783281.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|419246276|ref|ZP_13788900.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|419252005|ref|ZP_13794566.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|419874397|ref|ZP_14396333.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|419884759|ref|ZP_14405636.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|419902433|ref|ZP_14421648.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|419909781|ref|ZP_14428319.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|420099908|ref|ZP_14611111.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|420107627|ref|ZP_14617949.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|424758029|ref|ZP_18185751.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|378046718|gb|EHW09092.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|378066995|gb|EHW29122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|378072023|gb|EHW34087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|378078096|gb|EHW40087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|378085455|gb|EHW47342.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|378088356|gb|EHW50210.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|388351112|gb|EIL16390.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|388352870|gb|EIL17953.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|388372678|gb|EIL36095.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|388373883|gb|EIL37107.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|394412068|gb|EJE86246.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|394422115|gb|EJE95516.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|421948823|gb|EKU05823.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 345
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|417387391|ref|ZP_12151838.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353600498|gb|EHC56371.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
Length = 332
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|200388599|ref|ZP_03215211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605697|gb|EDZ04242.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 332
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|417543207|ref|ZP_12194442.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353657123|gb|EHC97661.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
Length = 332
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|300724718|ref|YP_003714043.1| tRNA -dihydrouridine synthase A [Xenorhabdus nematophila ATCC
19061]
gi|297631260|emb|CBJ91955.1| tRNA-dihydrouridine synthase A [Xenorhabdus nematophila ATCC 19061]
Length = 342
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 134/247 (54%), Positives = 182/247 (73%), Gaps = 4/247 (1%)
Query: 4 INSK---YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
IN K + + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N
Sbjct: 13 INGKTHTFKASRFSVAPMLDWTDRHCRYFHRLLSKEALLYTEMVTTGAIIHGKGDYLAYN 72
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
+EHP+A Q+G +EP+ LA+ A+I Q+ GYDEINLN GCPS+RVQNG FGA LM LV
Sbjct: 73 EQEHPLALQLGGSEPQALAQCARIAQEKGYDEINLNVGCPSDRVQNGRFGACLMGDAALV 132
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKL 179
+DC+KAM+D V+I +TVK RIGID+ +SY+F+ DF+ T V ++ C F++HAR A+L L
Sbjct: 133 ADCVKAMQDVVDIPVTVKTRIGIDEQDSYEFLCDFIETVVKNSDCDNFVIHARKAWLSGL 192
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR+IP L Y VY LK DFP+L INGGIK+ +E HL Y+DGVM+GREAY+NP
Sbjct: 193 SPKENREIPPLDYPRVYQLKNDFPQLTFSINGGIKSLEEAKQHLQYVDGVMIGREAYQNP 252
Query: 240 FLMSNFD 246
++++ D
Sbjct: 253 SMLAHVD 259
>gi|386032623|ref|YP_005952536.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|424828429|ref|ZP_18253157.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|449060398|ref|ZP_21738057.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
gi|339759751|gb|AEJ95971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|414705834|emb|CCN27538.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|448873903|gb|EMB08971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
Length = 332
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 70 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D
Sbjct: 190 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVD 249
>gi|168243640|ref|ZP_02668572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194448858|ref|YP_002048234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|386589569|ref|YP_006085969.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417354256|ref|ZP_12130739.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417362043|ref|ZP_12135791.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417491911|ref|ZP_12173108.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417535457|ref|ZP_12188924.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|418514870|ref|ZP_13081064.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|419731159|ref|ZP_14258083.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419736639|ref|ZP_14263468.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737299|ref|ZP_14264111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742757|ref|ZP_14269428.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748402|ref|ZP_14274899.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421572491|ref|ZP_16018140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574344|ref|ZP_16019967.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421580873|ref|ZP_16026426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582440|ref|ZP_16027977.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|194407162|gb|ACF67381.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337347|gb|EDZ24111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|353562279|gb|EHC28970.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353582408|gb|EHC43063.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353630230|gb|EHC77842.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353656757|gb|EHC97411.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|366077677|gb|EHN41687.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|381290979|gb|EIC32234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381292289|gb|EIC33493.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381306014|gb|EIC46912.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381313400|gb|EIC54185.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381314392|gb|EIC55162.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383796613|gb|AFH43695.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402517037|gb|EJW24442.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402518914|gb|EJW26281.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402525196|gb|EJW32488.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402533108|gb|EJW40292.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 332
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|416338796|ref|ZP_11674797.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|432799971|ref|ZP_20033970.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
gi|320193408|gb|EFW68045.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|431353327|gb|ELG40081.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
Length = 331
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 HTVYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLGEAKAHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 AVD 248
>gi|331680980|ref|ZP_08381617.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
gi|331081201|gb|EGI52362.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
Length = 345
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|304415193|ref|ZP_07395906.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
gi|304282951|gb|EFL91401.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
Length = 344
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 186/260 (71%), Gaps = 3/260 (1%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
KY + S+APM++ TDRHCR FHR +T+ + LY+EM TT AI+ K L ++ ++HP+
Sbjct: 23 KYPAHRFSVAPMLDWTDRHCRYFHRLLTKQTLLYSEMVTTGAIIHGKADYLAYSEQDHPV 82
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
Q+G ++PK LA AK+ Q+ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 83 VLQLGGSDPKILADCAKLGQQRGYNEINLNIGCPSDRVQNGRFGACLMGEADLVADCIKA 142
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNR 185
M D V I +TVK RIGID +SY+F+ DFV T+++ GC FI+HAR A+L L+PK+NR
Sbjct: 143 MNDGVSIPVTVKTRIGIDSHDSYEFLCDFVDTIANKGGCHIFIIHARKAWLSGLSPKENR 202
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP+L I+INGGI T ++ HL Y+DGVM+GREAY+NP +++
Sbjct: 203 EVPPLNYPRVYQLKRDFPQLTIVINGGITTLEDAADHLKYVDGVMIGREAYQNPAILAEV 262
Query: 246 DLNYYSNLPQYKIPTRIDII 265
D + PQ I ++ +I
Sbjct: 263 DRKLFD--PQAAITDKVAVI 280
>gi|293417553|ref|ZP_06660175.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
gi|291430271|gb|EFF03269.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
Length = 345
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/236 (56%), Positives = 175/236 (74%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|168784662|ref|ZP_02809669.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|168798291|ref|ZP_02823298.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|261225167|ref|ZP_05939448.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255581|ref|ZP_05948114.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK966]
gi|416319470|ref|ZP_11662022.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|416328425|ref|ZP_11668185.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|419072340|ref|ZP_13617933.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|419083382|ref|ZP_13628820.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|419095770|ref|ZP_13641039.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|419101535|ref|ZP_13646716.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|419106665|ref|ZP_13651781.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|420272590|ref|ZP_14774932.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|420278224|ref|ZP_14780497.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|420284688|ref|ZP_14786908.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|420295243|ref|ZP_14797347.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|420301158|ref|ZP_14803196.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|420312442|ref|ZP_14814363.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|420318167|ref|ZP_14820029.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|421815159|ref|ZP_16250851.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|421826963|ref|ZP_16262309.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|424086814|ref|ZP_17823274.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|424093232|ref|ZP_17829131.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|424099926|ref|ZP_17835150.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|424106124|ref|ZP_17840824.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|424131049|ref|ZP_17863927.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|424137366|ref|ZP_17869776.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|424336356|ref|ZP_17898537.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|424465330|ref|ZP_17915614.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|424471550|ref|ZP_17921324.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|424483824|ref|ZP_17932779.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|424490020|ref|ZP_17938529.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|424496739|ref|ZP_17944220.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|424517029|ref|ZP_17961581.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|424523145|ref|ZP_17967224.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|424559791|ref|ZP_18001160.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|424566113|ref|ZP_18007091.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|424584222|ref|ZP_18023844.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|425106972|ref|ZP_18509261.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|425134666|ref|ZP_18535494.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|425146938|ref|ZP_18546907.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|425158951|ref|ZP_18558190.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|425183121|ref|ZP_18580793.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|425196152|ref|ZP_18592897.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|425202631|ref|ZP_18598814.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|425202998|ref|ZP_18599160.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|425245851|ref|ZP_18639134.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|425257842|ref|ZP_18650313.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|425264095|ref|ZP_18656062.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|425297571|ref|ZP_18687665.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|425314257|ref|ZP_18703401.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|425326383|ref|ZP_18714685.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|425375795|ref|ZP_18760409.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|425388680|ref|ZP_18772216.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|425395410|ref|ZP_18778492.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|425401465|ref|ZP_18784147.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|425407562|ref|ZP_18789759.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|428949936|ref|ZP_19022183.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|428968634|ref|ZP_19039313.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|428974385|ref|ZP_19044672.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|429005071|ref|ZP_19073105.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|429035578|ref|ZP_19101074.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|429041686|ref|ZP_19106749.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|429057941|ref|ZP_19122198.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|429070193|ref|ZP_19133603.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444927832|ref|ZP_21247076.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444933457|ref|ZP_21252446.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444938898|ref|ZP_21257611.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444944527|ref|ZP_21262995.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444982946|ref|ZP_21299834.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444998870|ref|ZP_21315354.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|445004425|ref|ZP_21320798.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|445014945|ref|ZP_21331033.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|445020804|ref|ZP_21336751.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|445026240|ref|ZP_21342046.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|445037097|ref|ZP_21352606.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
gi|189375043|gb|EDU93459.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|189379226|gb|EDU97642.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|320190826|gb|EFW65476.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|326341906|gb|EGD65689.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|377905841|gb|EHU70100.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|377922418|gb|EHU86404.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|377936091|gb|EHU99885.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|377936617|gb|EHV00411.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|377942952|gb|EHV06675.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|390636437|gb|EIN16021.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|390637605|gb|EIN17147.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|390655447|gb|EIN33390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|390658220|gb|EIN36019.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|390679983|gb|EIN55839.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|390691203|gb|EIN65962.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|390710719|gb|EIN83721.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|390723479|gb|EIN96074.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|390754989|gb|EIO24539.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|390756577|gb|EIO26082.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|390761239|gb|EIO30536.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|390784577|gb|EIO52144.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|390792323|gb|EIO59677.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|390796476|gb|EIO63752.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|390799262|gb|EIO66435.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|390803893|gb|EIO70880.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|390820925|gb|EIO87170.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|390839958|gb|EIP04034.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|390842198|gb|EIP06064.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|390879811|gb|EIP40551.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|390889585|gb|EIP49310.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|390897500|gb|EIP56820.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|390905059|gb|EIP64010.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|390914786|gb|EIP73317.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|408061712|gb|EKG96220.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|408062719|gb|EKG97220.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|408093861|gb|EKH26909.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|408105171|gb|EKH37371.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|408111993|gb|EKH43683.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|408133493|gb|EKH63390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|408156706|gb|EKH84906.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|408169757|gb|EKH97002.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|408176509|gb|EKI03357.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|408209314|gb|EKI33913.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|408223192|gb|EKI46984.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|408236855|gb|EKI59731.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|408287627|gb|EKJ06484.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|408302509|gb|EKJ20013.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|408303695|gb|EKJ21144.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|408315132|gb|EKJ31461.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|408320768|gb|EKJ36839.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|408543932|gb|EKK21405.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|408577476|gb|EKK53049.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|408587861|gb|EKK62485.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|408598120|gb|EKK72080.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|427203743|gb|EKV74041.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|427216870|gb|EKV85959.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|427223476|gb|EKV92220.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|427254977|gb|EKW21253.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|427279883|gb|EKW44283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|427288468|gb|EKW52099.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|427308480|gb|EKW70861.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|427314711|gb|EKW76747.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444534568|gb|ELV14789.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444535507|gb|ELV15578.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444544890|gb|ELV23876.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444553672|gb|ELV31276.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444588248|gb|ELV63633.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444602466|gb|ELV77207.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|444611520|gb|ELV85847.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|444619373|gb|ELV93414.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|444625634|gb|ELV99454.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|444634484|gb|ELW07956.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|444641079|gb|ELW14320.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
Length = 345
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|425320239|ref|ZP_18708993.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
gi|408234364|gb|EKI57389.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
Length = 331
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 134/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 69 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 189 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 248
Query: 247 LNYYSN 252
+ +
Sbjct: 249 REIFGS 254
>gi|398957388|ref|ZP_10677246.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM33]
gi|398148326|gb|EJM37008.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM33]
Length = 331
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRYFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIK+ + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKADFPELEIILNGGIKSLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|336248184|ref|YP_004591894.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
gi|334734240|gb|AEG96615.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
Length = 332
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 7 STAFAAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 67 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAALVADCI 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDRDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y V+ LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVWQLKRDFPHLTMAINGGIKSLAEAKQQLEHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
+ D
Sbjct: 247 SVD 249
>gi|145633883|ref|ZP_01789604.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145635660|ref|ZP_01791356.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
gi|144985255|gb|EDJ92098.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145267055|gb|EDK07063.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
Length = 329
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRCRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYTRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|187478770|ref|YP_786794.1| tRNA-dihydrouridine synthase A [Bordetella avium 197N]
gi|115423356|emb|CAJ49890.1| tRNA-dihydrouridine synthase A [Bordetella avium 197N]
Length = 327
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 181/256 (70%), Gaps = 4/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++ +APM+++TDRHCR FHR + ++ LYTEM TT A++ GN + LDF+ EHP+A Q+
Sbjct: 7 RLCVAPMIDVTDRHCRYFHRLLAPHARLYTEMITTGALMHGNVERHLDFDETEHPVALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA +A++ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+
Sbjct: 67 GGSEPDALAAAARLGRQWGYDEVNLNCGCPSERVQRGAFGACLMAEPDLVADCMKAMQDA 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVKHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L
Sbjct: 127 VDIPVTVKHRLGLDYNESYAFVRDFVGKIYDTGCRVFVVHARNAVLKGLSPKDNREIPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK DFPE I++NGG+ + + DGVMLGR A+ P ++S L +
Sbjct: 187 RYDVAAQLKHDFPEATIVLNGGLADATQALDAASRFDGVMLGRAAWHTPRVLSELSLRLW 246
Query: 251 SNLPQYKIPTRIDIIN 266
P ++PT +++
Sbjct: 247 ---PSTRLPTDAQVVD 259
>gi|53804232|ref|YP_114112.1| tRNA-dihydrouridine synthase A [Methylococcus capsulatus str. Bath]
gi|53757993|gb|AAU92284.1| TIM-barrel protein, yjbN family [Methylococcus capsulatus str.
Bath]
Length = 360
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 181/244 (74%), Gaps = 1/244 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
+ ++S+APMM+ TDRHCR F R I+R++ LYTEM TT AIL G+++ L F+ EHP+A
Sbjct: 27 RHRLSVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRERLLGFHPAEHPLAI 86
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P+ LA+ AKI + G+DE+NLN GCPS RVQ G FGA LM +P V+DC++AM
Sbjct: 87 QLGGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRAMC 146
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
++V + +TVK RIGIDD +SY+ + FV V+ AGCRTFIVHAR A+L+ L+PK+NR+ P
Sbjct: 147 EAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKENRQTP 206
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK + PEL I++NGGI+T E + HL++ DGVM+GR AY NP+L++ D
Sbjct: 207 PLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHLSWCDGVMIGRAAYHNPYLLAEADRR 266
Query: 249 YYSN 252
Y +
Sbjct: 267 CYGH 270
>gi|398974273|ref|ZP_10684977.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM25]
gi|398141817|gb|EJM30726.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM25]
Length = 331
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRYFLRILSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELE I+NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAARLKADFPELEFILNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|419812623|ref|ZP_14337487.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|385154505|gb|EIF16517.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
Length = 339
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTMLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|238764115|ref|ZP_04625069.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
gi|238697652|gb|EEP90415.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
Length = 343
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 130/241 (53%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
+Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+
Sbjct: 16 RYPLQRFSVAPMLDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGDYLAYSEQDHPV 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 76 ALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMAEANLVADCIKA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNR 185
MRD V I +TVK RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR
Sbjct: 136 MRDVVSIPVTVKTRIGIDELDSYEFLCEFVQTVAGRGECDIFTIHARKAWLSGLSPKENR 195
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 196 EVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQV 255
Query: 246 D 246
D
Sbjct: 256 D 256
>gi|148827810|ref|YP_001292563.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittGG]
gi|148719052|gb|ABR00180.1| hypothetical protein CGSHiGG_06425 [Haemophilus influenzae PittGG]
Length = 327
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKHCARLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYTRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|77460046|ref|YP_349553.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens Pf0-1]
gi|77384049|gb|ABA75562.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas fluorescens
Pf0-1]
Length = 331
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRYFLRILSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELE I+NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 193 LRYDVAARLKADFPELEFILNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|417439152|ref|ZP_12161938.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353612375|gb|EHC64763.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 332
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|194446261|ref|YP_002043494.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|418807868|ref|ZP_13363425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811602|ref|ZP_13367127.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418816205|ref|ZP_13371698.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418822438|ref|ZP_13377851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828487|ref|ZP_13383521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832566|ref|ZP_13387503.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418833855|ref|ZP_13388766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841232|ref|ZP_13396051.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418848468|ref|ZP_13403206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854520|ref|ZP_13409188.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|194404924|gb|ACF65146.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|392777697|gb|EJA34379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778169|gb|EJA34849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392788113|gb|EJA44651.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392790426|gb|EJA46924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392790521|gb|EJA47016.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392797196|gb|EJA53514.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392805763|gb|EJA61878.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392808561|gb|EJA64609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392822768|gb|EJA78572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824375|gb|EJA80161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
Length = 332
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|378976432|ref|YP_005224573.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419980655|ref|ZP_14495938.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985812|ref|ZP_14500950.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991568|ref|ZP_14506532.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997577|ref|ZP_14512372.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003934|ref|ZP_14518576.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009433|ref|ZP_14523916.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015925|ref|ZP_14530222.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021222|ref|ZP_14535404.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420038193|ref|ZP_14551842.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044233|ref|ZP_14557715.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420049952|ref|ZP_14563256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055546|ref|ZP_14568712.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060154|ref|ZP_14573156.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420067204|ref|ZP_14579999.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071847|ref|ZP_14584490.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078448|ref|ZP_14590905.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082921|ref|ZP_14595211.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421913527|ref|ZP_16343208.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914666|ref|ZP_16344307.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424935574|ref|ZP_18353946.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|428150792|ref|ZP_18998551.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428942393|ref|ZP_19015390.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|364515843|gb|AEW58971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345328|gb|EJJ38453.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350360|gb|EJJ43449.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397362413|gb|EJJ55063.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363280|gb|EJJ55921.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397367621|gb|EJJ60231.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397375785|gb|EJJ68064.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381289|gb|EJJ73461.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387039|gb|EJJ79089.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397404598|gb|EJJ96099.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397412235|gb|EJK03474.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412369|gb|EJK03604.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421653|gb|EJK12659.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397428551|gb|EJK19288.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434293|gb|EJK24930.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439883|gb|EJK30310.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444790|gb|EJK35052.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451690|gb|EJK41770.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407809761|gb|EKF81012.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410112612|emb|CCM85833.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123082|emb|CCM86932.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426298762|gb|EKV61144.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|427539260|emb|CCM94689.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 332
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 70 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D
Sbjct: 190 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVD 249
>gi|84393138|ref|ZP_00991902.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
gi|84376190|gb|EAP93074.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
Length = 334
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
SKY ++S+APM++ TDRHCR FHR +++ + LYTEM TT AIL K L++N +EH
Sbjct: 7 TSKYASNRLSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMITTGAILHGKGDFLEYNEQEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+
Sbjct: 67 PLALQLGGSNPVDLAACAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AM++ +I ITVK RIGIDD +SY+F+ FV TVS GC F +HAR A+L L+PK+
Sbjct: 127 SAMKEVTDIPITVKTRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ Y +KKDF +L I +NGG+ T ++ HL ++DGVM+GREAY +PF+++
Sbjct: 187 NREIPPLDYDRAYQIKKDFSDLVIAVNGGVTTLEQTKEHLQHLDGVMIGREAYHSPFILA 246
Query: 244 NFD 246
D
Sbjct: 247 EVD 249
>gi|419974839|ref|ZP_14490255.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|420028064|ref|ZP_14542048.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032652|ref|ZP_14546465.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397344806|gb|EJJ37936.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397392208|gb|EJJ84012.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397397139|gb|EJJ88820.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
Length = 331
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 69 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVD 248
>gi|168760895|ref|ZP_02785902.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|170682797|ref|YP_001746438.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|191167463|ref|ZP_03029277.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209921533|ref|YP_002295617.1| tRNA-dihydrouridine synthase A [Escherichia coli SE11]
gi|217325395|ref|ZP_03441479.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|301019187|ref|ZP_07183385.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|386698928|ref|YP_006162765.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|386711998|ref|YP_006175719.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387509503|ref|YP_006161759.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|407467057|ref|YP_006786501.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484221|ref|YP_006781371.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484767|ref|YP_006772313.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416308837|ref|ZP_11655290.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|416343439|ref|ZP_11677443.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|416813155|ref|ZP_11891054.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97]
gi|416823667|ref|ZP_11895656.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|417149502|ref|ZP_11989593.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|417157170|ref|ZP_11994794.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|417167417|ref|ZP_12000303.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|417173676|ref|ZP_12003472.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|417279832|ref|ZP_12067137.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|417293632|ref|ZP_12080911.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|417584457|ref|ZP_12235241.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|417620745|ref|ZP_12271141.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|417637011|ref|ZP_12287212.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|417807749|ref|ZP_12454675.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|417835490|ref|ZP_12481929.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|417867571|ref|ZP_12512607.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|417944826|ref|ZP_12588065.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|417977734|ref|ZP_12618514.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|418270660|ref|ZP_12888421.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|418305679|ref|ZP_12917473.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|418943089|ref|ZP_13496313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|419048150|ref|ZP_13595076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|419059981|ref|ZP_13606775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|419123414|ref|ZP_13668349.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|419139483|ref|ZP_13684267.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|419145169|ref|ZP_13689890.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|419161932|ref|ZP_13706418.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|419167022|ref|ZP_13711464.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|419173038|ref|ZP_13716904.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|419183613|ref|ZP_13727193.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|419189212|ref|ZP_13732709.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|419347900|ref|ZP_13889260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|419394384|ref|ZP_13935175.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|419919489|ref|ZP_14437641.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|419925921|ref|ZP_14443740.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|419929982|ref|ZP_14447646.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|419935807|ref|ZP_14452875.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|419938219|ref|ZP_14455059.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|419950991|ref|ZP_14467191.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|422761367|ref|ZP_16815125.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|422772606|ref|ZP_16826293.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|424458775|ref|ZP_17909846.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|424478022|ref|ZP_17927315.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|425189406|ref|ZP_18586655.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|425431515|ref|ZP_18812101.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|428962046|ref|ZP_19033301.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|428980803|ref|ZP_19050585.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|428992705|ref|ZP_19061671.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|429023447|ref|ZP_19089939.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|429047475|ref|ZP_19112165.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429829329|ref|ZP_19360300.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
gi|170520515|gb|ACB18693.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|189368570|gb|EDU86986.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|190902505|gb|EDV62240.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209914792|dbj|BAG79866.1| conserved hypothetical protein [Escherichia coli SE11]
gi|217321616|gb|EEC30040.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|299882344|gb|EFI90555.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|320200820|gb|EFW75406.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|320654888|gb|EFX22849.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660736|gb|EFX28193.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|323940232|gb|EGB36425.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|324118621|gb|EGC12513.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|326346520|gb|EGD70254.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|339417777|gb|AEJ59449.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|340732070|gb|EGR61209.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|340737645|gb|EGR71900.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|341920860|gb|EGT70465.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|342363423|gb|EGU27531.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|344192596|gb|EGV46686.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|345342640|gb|EGW75032.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|345368410|gb|EGX00408.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|345384293|gb|EGX14160.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|374361497|gb|AEZ43204.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|375321596|gb|EHS67417.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|377887894|gb|EHU52368.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|377901048|gb|EHU65371.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|377960668|gb|EHV24147.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|377978281|gb|EHV41560.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|377988030|gb|EHV51211.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|378003044|gb|EHV66090.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|378005322|gb|EHV68326.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|378008943|gb|EHV71901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|378020383|gb|EHV83129.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|378022948|gb|EHV85629.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|378181512|gb|EHX42182.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|378232283|gb|EHX92384.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|383390455|gb|AFH15413.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|383407690|gb|AFH13933.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|386161723|gb|EIH23526.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|386165920|gb|EIH32440.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|386171539|gb|EIH43583.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|386176368|gb|EIH53847.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|386237548|gb|EII74493.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|386251820|gb|EIJ01512.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|388385029|gb|EIL46734.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|388387683|gb|EIL49293.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|388402536|gb|EIL63108.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|388403648|gb|EIL64152.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|388410787|gb|EIL70990.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|388415638|gb|EIL75560.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|390740474|gb|EIO11601.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|390764183|gb|EIO33397.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|397894258|gb|EJL10705.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|406779929|gb|AFS59353.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056518|gb|AFS76569.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063092|gb|AFS84139.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408100365|gb|EKH32871.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|408341112|gb|EKJ55583.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|427200589|gb|EKV71002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|427220916|gb|EKV89803.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|427237122|gb|EKW04666.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|427272745|gb|EKW37470.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|427295400|gb|EKW58508.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429250232|gb|EKY34897.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
Length = 339
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|398897089|ref|ZP_10647955.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM55]
gi|398177376|gb|EJM65058.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM55]
Length = 331
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHDEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIK+ + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKADFPELEIILNGGIKSLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|198244614|ref|YP_002218138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|207859397|ref|YP_002246048.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375121668|ref|ZP_09766835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|378957799|ref|YP_005215286.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|418847343|ref|ZP_13402104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418859768|ref|ZP_13414359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418864917|ref|ZP_13419433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|421359864|ref|ZP_15810151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362308|ref|ZP_15812563.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366288|ref|ZP_15816492.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421373220|ref|ZP_15823361.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377635|ref|ZP_15827730.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421380350|ref|ZP_15830413.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385699|ref|ZP_15835720.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389299|ref|ZP_15839283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421393839|ref|ZP_15843782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400104|ref|ZP_15849995.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402594|ref|ZP_15852451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421407490|ref|ZP_15857298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412363|ref|ZP_15862118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416418|ref|ZP_15866138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421420567|ref|ZP_15870244.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427100|ref|ZP_15876724.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428966|ref|ZP_15878567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436344|ref|ZP_15885876.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421440629|ref|ZP_15890105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445435|ref|ZP_15894861.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447540|ref|ZP_15896939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421886671|ref|ZP_16317845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|436624284|ref|ZP_20514958.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436698052|ref|ZP_20518275.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436795787|ref|ZP_20522518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807028|ref|ZP_20527142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813042|ref|ZP_20531327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846750|ref|ZP_20539520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436850714|ref|ZP_20541382.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436859829|ref|ZP_20547715.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866727|ref|ZP_20552156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871151|ref|ZP_20554549.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436880927|ref|ZP_20560526.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889814|ref|ZP_20565480.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436898136|ref|ZP_20570147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903862|ref|ZP_20574131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913077|ref|ZP_20578644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917495|ref|ZP_20581003.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925178|ref|ZP_20585652.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436937528|ref|ZP_20592655.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436944730|ref|ZP_20597140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436947067|ref|ZP_20598224.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959007|ref|ZP_20603458.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436973524|ref|ZP_20610787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436987555|ref|ZP_20616101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436994953|ref|ZP_20619117.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437006458|ref|ZP_20622695.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437017141|ref|ZP_20626198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437027814|ref|ZP_20630521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437041703|ref|ZP_20635663.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437047723|ref|ZP_20639070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437056212|ref|ZP_20643747.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437069008|ref|ZP_20651022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077966|ref|ZP_20655824.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083808|ref|ZP_20659375.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089230|ref|ZP_20662026.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437106080|ref|ZP_20667220.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437120160|ref|ZP_20671298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129117|ref|ZP_20675743.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437137020|ref|ZP_20680088.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437144740|ref|ZP_20685211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437151618|ref|ZP_20689425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163836|ref|ZP_20696814.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437167610|ref|ZP_20698881.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437174616|ref|ZP_20702261.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437187466|ref|ZP_20710006.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437235734|ref|ZP_20713864.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437258921|ref|ZP_20716821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437271113|ref|ZP_20723474.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274146|ref|ZP_20725147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437284399|ref|ZP_20729570.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307422|ref|ZP_20734815.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437333401|ref|ZP_20742337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437337522|ref|ZP_20743277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437360475|ref|ZP_20748283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412006|ref|ZP_20753179.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437439735|ref|ZP_20757354.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437460086|ref|ZP_20761295.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437475694|ref|ZP_20766867.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493315|ref|ZP_20772089.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437515892|ref|ZP_20777999.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437536148|ref|ZP_20781659.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437558984|ref|ZP_20785400.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574563|ref|ZP_20789835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437591341|ref|ZP_20794769.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437610848|ref|ZP_20801159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437615406|ref|ZP_20802212.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437642835|ref|ZP_20808283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437663317|ref|ZP_20813928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437685253|ref|ZP_20819019.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697203|ref|ZP_20822766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437713357|ref|ZP_20827338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736658|ref|ZP_20832849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748959|ref|ZP_20833763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437805846|ref|ZP_20839380.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437902940|ref|ZP_20849931.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438088731|ref|ZP_20860021.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438103842|ref|ZP_20865650.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438109709|ref|ZP_20867560.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438136523|ref|ZP_20874437.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445139554|ref|ZP_21384431.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445151741|ref|ZP_21390512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445167291|ref|ZP_21394359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445227985|ref|ZP_21404518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445341125|ref|ZP_21416641.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445347558|ref|ZP_21419213.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445360696|ref|ZP_21423627.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|197939130|gb|ACH76463.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206711200|emb|CAR35576.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625935|gb|EGE32280.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|357208410|gb|AET56456.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|379984067|emb|CCF90118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|392808422|gb|EJA64472.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392828895|gb|EJA84580.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392829377|gb|EJA85054.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|395983498|gb|EJH92690.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990633|gb|EJH99763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395991297|gb|EJI00422.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395997052|gb|EJI06094.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395998956|gb|EJI07982.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396004336|gb|EJI13319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396016097|gb|EJI24966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396016184|gb|EJI25052.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017911|gb|EJI26775.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396025883|gb|EJI34657.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396030910|gb|EJI39639.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396031000|gb|EJI39728.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396042678|gb|EJI51299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044595|gb|EJI53191.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396045706|gb|EJI54298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396052595|gb|EJI61101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396053704|gb|EJI62198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396059828|gb|EJI68276.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396065738|gb|EJI74111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396066122|gb|EJI74487.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074842|gb|EJI83126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434940545|gb|ELL47161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962021|gb|ELL55254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434963196|gb|ELL56319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968984|gb|ELL61710.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975467|gb|ELL67755.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977488|gb|ELL69606.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434987228|gb|ELL78870.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434987571|gb|ELL79211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434993859|gb|ELL85243.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|434998886|gb|ELL90099.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435001265|gb|ELL92383.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435004449|gb|ELL95412.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006805|gb|ELL97664.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435013684|gb|ELM04306.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435017957|gb|ELM08434.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435024750|gb|ELM14955.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031337|gb|ELM21309.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035092|gb|ELM24939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435037821|gb|ELM27604.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435040543|gb|ELM30299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435053716|gb|ELM43153.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435055052|gb|ELM44471.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058085|gb|ELM47441.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435059047|gb|ELM48338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063298|gb|ELM52451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435070606|gb|ELM59589.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435082225|gb|ELM70849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435084867|gb|ELM73433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435085969|gb|ELM74516.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435092972|gb|ELM81314.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435098076|gb|ELM86327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099725|gb|ELM87917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435102578|gb|ELM90682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435106892|gb|ELM94889.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435115377|gb|ELN03144.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435121259|gb|ELN08805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127377|gb|ELN14739.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127464|gb|ELN14825.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435135039|gb|ELN22149.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138739|gb|ELN25764.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435140410|gb|ELN27371.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144519|gb|ELN31360.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435151384|gb|ELN38036.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435157152|gb|ELN43614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435157727|gb|ELN44165.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435165585|gb|ELN51611.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435170439|gb|ELN56187.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435176408|gb|ELN61787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435185396|gb|ELN70263.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435186499|gb|ELN71330.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435187736|gb|ELN72479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435189028|gb|ELN73675.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435196976|gb|ELN81293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435203871|gb|ELN87608.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210595|gb|ELN93836.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435212364|gb|ELN95362.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222010|gb|ELO04148.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435223560|gb|ELO05594.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228452|gb|ELO09896.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435229138|gb|ELO10528.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239405|gb|ELO19894.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435240232|gb|ELO20648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435245792|gb|ELO25821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252278|gb|ELO31875.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435254935|gb|ELO34318.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262414|gb|ELO41504.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435266742|gb|ELO45475.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435267111|gb|ELO45823.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435275676|gb|ELO53753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435276384|gb|ELO54395.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285391|gb|ELO62793.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435286707|gb|ELO63956.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435301929|gb|ELO77928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435311884|gb|ELO85920.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435317405|gb|ELO90456.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435320695|gb|ELO93214.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435322858|gb|ELO95045.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435332182|gb|ELP03142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444854188|gb|ELX79254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444855224|gb|ELX80273.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444865568|gb|ELX90337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444866642|gb|ELX91366.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871796|gb|ELX96190.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876809|gb|ELY00968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444884961|gb|ELY08770.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 332
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|342904813|ref|ZP_08726611.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
gi|341952690|gb|EGT79213.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
Length = 329
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|432790833|ref|ZP_20024951.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|432796823|ref|ZP_20030853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
gi|431344148|gb|ELG31102.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|431346808|gb|ELG33702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
Length = 345
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|425291271|ref|ZP_18682073.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
gi|408208406|gb|EKI33055.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
Length = 345
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|218702713|ref|YP_002410342.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|386626991|ref|YP_006146719.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
gi|218372699|emb|CAR20575.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|349740727|gb|AEQ15433.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
Length = 345
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|109900349|ref|YP_663604.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas atlantica T6c]
gi|109702630|gb|ABG42550.1| tRNA-U16,U17-dihydrouridine synthase [Pseudoalteromonas atlantica
T6c]
Length = 345
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 185/256 (72%), Gaps = 2/256 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R IS+APM++ TD+HCR F RQI+++S LYTEM TT AI+ K L FN EHP+A Q+
Sbjct: 10 RTISVAPMLDWTDKHCRYFLRQISKHSLLYTEMVTTGAIIFGKGDYLAFNDTEHPVALQL 69
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI+AM+
Sbjct: 70 GGSDPVDMARCAVLAQEQGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAACIQAMQKE 129
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD++ Y + DF+ V+ AGC F VHAR A+LK L+PK+NR IP L
Sbjct: 130 VDIPVTVKSRIGIDDMDEYKDLTDFIQIVADAGCDIFTVHARKAWLKGLSPKENRDIPPL 189
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y+ VY LK++FP+L + INGG+KT + +HL +DGVM+GRE Y NP+++++ D +Y
Sbjct: 190 MYDRVYALKEEFPQLNLSINGGVKTLDDATMHLEKLDGVMIGREVYSNPYILADVDKLFY 249
Query: 251 SNLPQYKIPTRIDIIN 266
+ +P+R +I++
Sbjct: 250 QD--DSPVPSREEIVH 263
>gi|428935408|ref|ZP_19008884.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|426300609|gb|EKV62885.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
Length = 332
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 178/240 (74%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 70 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGTFGACLMGNAPLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD+V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDAVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D
Sbjct: 190 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPDILASVD 249
>gi|15834285|ref|NP_313058.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
Sakai]
gi|74314543|ref|YP_312962.1| tRNA-dihydrouridine synthase A [Shigella sonnei Ss046]
gi|170083506|ref|YP_001732826.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|193063063|ref|ZP_03044155.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218556606|ref|YP_002389520.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218697757|ref|YP_002405424.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218707670|ref|YP_002415189.1| tRNA -dihydrouridine synthase A [Escherichia coli UMN026]
gi|254163985|ref|YP_003047093.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|260846843|ref|YP_003224621.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|291285465|ref|YP_003502283.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300817967|ref|ZP_07098180.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300823590|ref|ZP_07103718.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300899835|ref|ZP_07118049.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300906360|ref|ZP_07124058.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300917303|ref|ZP_07133976.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300924312|ref|ZP_07140291.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300938186|ref|ZP_07152956.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300946621|ref|ZP_07160880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300957541|ref|ZP_07169748.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|301021575|ref|ZP_07185575.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|301302728|ref|ZP_07208857.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|301330578|ref|ZP_07223186.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301645037|ref|ZP_07245000.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|307312109|ref|ZP_07591746.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|309795855|ref|ZP_07690269.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|331644790|ref|ZP_08345907.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331665718|ref|ZP_08366612.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331670912|ref|ZP_08371746.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331680179|ref|ZP_08380838.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|378715002|ref|YP_005279895.1| yjbN family TIM-barrel protein [Escherichia coli KO11FL]
gi|386278658|ref|ZP_10056352.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386597433|ref|YP_006093833.1| yjbN family TIM-barrel protein [Escherichia coli DH1]
gi|386611456|ref|YP_006126942.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387623679|ref|YP_006131307.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|387885273|ref|YP_006315575.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|388479998|ref|YP_492192.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
W3110]
gi|404372969|ref|ZP_10978244.1| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|414578913|ref|ZP_11436071.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|415775768|ref|ZP_11487452.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|415831878|ref|ZP_11517429.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|415851830|ref|ZP_11528400.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|415864649|ref|ZP_11537673.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|415874338|ref|ZP_11541392.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|417127511|ref|ZP_11974951.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|417132710|ref|ZP_11977495.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|417141753|ref|ZP_11984605.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|417187164|ref|ZP_12012021.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|417238755|ref|ZP_12036179.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|417249758|ref|ZP_12041542.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|417261060|ref|ZP_12048553.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|417269156|ref|ZP_12056516.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|417273712|ref|ZP_12061057.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|417310661|ref|ZP_12097471.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|417583720|ref|ZP_12234514.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|417599494|ref|ZP_12250112.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|417610830|ref|ZP_12261315.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|417615717|ref|ZP_12266162.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|417631546|ref|ZP_12281774.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|418960069|ref|ZP_13511964.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|419053914|ref|ZP_13600777.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|419065341|ref|ZP_13612045.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|419112114|ref|ZP_13657159.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|419117635|ref|ZP_13662637.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|419129077|ref|ZP_13673940.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|419151060|ref|ZP_13695702.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|419156579|ref|ZP_13701128.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|419194344|ref|ZP_13737778.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|419280846|ref|ZP_13823079.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|419292283|ref|ZP_13834361.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|419303099|ref|ZP_13845085.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|419309143|ref|ZP_13851027.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|419314102|ref|ZP_13855954.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|419352352|ref|ZP_13893673.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|419357838|ref|ZP_13899077.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|419362797|ref|ZP_13903997.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|419367977|ref|ZP_13909116.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|419372703|ref|ZP_13913802.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|419383646|ref|ZP_13924578.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|419388902|ref|ZP_13929756.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|419399518|ref|ZP_13940272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|419404760|ref|ZP_13945471.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|419409921|ref|ZP_13950600.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|419415486|ref|ZP_13956112.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|419805709|ref|ZP_14330838.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|420361454|ref|ZP_14862391.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|420366102|ref|ZP_14866955.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|420388436|ref|ZP_14887762.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|420394208|ref|ZP_14893445.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|421820906|ref|ZP_16256383.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|421827916|ref|ZP_16263248.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|422331517|ref|ZP_16412533.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|422354931|ref|ZP_16435656.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|422776251|ref|ZP_16829905.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|422958043|ref|ZP_16970257.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|422990314|ref|ZP_16981086.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|422997210|ref|ZP_16987972.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|423002306|ref|ZP_16993057.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|423005962|ref|ZP_16996707.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|423012525|ref|ZP_17003255.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|423021756|ref|ZP_17012460.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|423026910|ref|ZP_17017604.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|423032739|ref|ZP_17023425.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|423035615|ref|ZP_17026291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040734|ref|ZP_17031402.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047420|ref|ZP_17038078.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055958|ref|ZP_17044764.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057963|ref|ZP_17046761.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703599|ref|ZP_17678031.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|423708364|ref|ZP_17682744.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|424080404|ref|ZP_17817337.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|424112734|ref|ZP_17846938.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|424124866|ref|ZP_17858141.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|424452613|ref|ZP_17904228.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|424528995|ref|ZP_17972685.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|424535138|ref|ZP_17978465.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|425100876|ref|ZP_18503591.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|425112954|ref|ZP_18514853.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|425117681|ref|ZP_18519448.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|425122396|ref|ZP_18524060.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|425128923|ref|ZP_18530069.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|425159409|ref|ZP_18558619.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|425171003|ref|ZP_18569455.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|425177043|ref|ZP_18575140.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|425214787|ref|ZP_18610168.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|425220869|ref|ZP_18615810.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|425227524|ref|ZP_18621967.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|425233673|ref|ZP_18627690.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|425239596|ref|ZP_18633294.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|425251985|ref|ZP_18644907.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|425275402|ref|ZP_18666774.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|425285955|ref|ZP_18676961.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|425413899|ref|ZP_18795638.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|425420221|ref|ZP_18801470.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|425425094|ref|ZP_18806232.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|427811850|ref|ZP_18978915.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|428955991|ref|ZP_19027759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|428986610|ref|ZP_19055976.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|428998598|ref|ZP_19067168.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|429011083|ref|ZP_19078450.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|429017496|ref|ZP_19084350.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|429029414|ref|ZP_19095364.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|429052887|ref|ZP_19117438.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|429063933|ref|ZP_19127872.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|429081140|ref|ZP_19144260.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429721797|ref|ZP_19256708.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773875|ref|ZP_19305884.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429779060|ref|ZP_19311021.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782895|ref|ZP_19314815.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429788288|ref|ZP_19320170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429794726|ref|ZP_19326562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429800686|ref|ZP_19332470.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429804299|ref|ZP_19336051.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429809124|ref|ZP_19340834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429814888|ref|ZP_19346553.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429820092|ref|ZP_19351716.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429835802|ref|ZP_19366016.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429906166|ref|ZP_19372138.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910300|ref|ZP_19376258.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916198|ref|ZP_19382141.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921246|ref|ZP_19387170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927051|ref|ZP_19392960.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930984|ref|ZP_19396881.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937525|ref|ZP_19403409.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429943203|ref|ZP_19409074.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945884|ref|ZP_19411742.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953449|ref|ZP_19419291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956792|ref|ZP_19422622.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432351237|ref|ZP_19594554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|432379291|ref|ZP_19622268.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|432404445|ref|ZP_19647184.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|432428713|ref|ZP_19671188.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|432463456|ref|ZP_19705583.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|432478411|ref|ZP_19720392.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|432479001|ref|ZP_19720968.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|432491879|ref|ZP_19733734.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|432520261|ref|ZP_19757436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|432531841|ref|ZP_19768857.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|432540429|ref|ZP_19777317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|432545911|ref|ZP_19782728.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|432551392|ref|ZP_19788135.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|432561499|ref|ZP_19798137.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|432604875|ref|ZP_19841098.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|432624444|ref|ZP_19860452.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|432625219|ref|ZP_19861214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|432643645|ref|ZP_19879462.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|432658890|ref|ZP_19894560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|432663768|ref|ZP_19899375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|432682842|ref|ZP_19918190.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|432683524|ref|ZP_19918853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|432689370|ref|ZP_19924630.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|432702216|ref|ZP_19937350.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|432716681|ref|ZP_19951690.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|432735095|ref|ZP_19969903.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|432752504|ref|ZP_19987078.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|432762956|ref|ZP_19997414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|432768421|ref|ZP_20002808.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|432772821|ref|ZP_20007129.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|432808295|ref|ZP_20042205.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|432811799|ref|ZP_20045651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|432817883|ref|ZP_20051610.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|432829663|ref|ZP_20063275.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|432832716|ref|ZP_20066266.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|432837144|ref|ZP_20070644.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|432857506|ref|ZP_20084376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|432872090|ref|ZP_20091969.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|432882896|ref|ZP_20098516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|432908878|ref|ZP_20116469.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|432931883|ref|ZP_20131824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|432943915|ref|ZP_20140578.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|432951533|ref|ZP_20145037.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|432958064|ref|ZP_20149206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|432965817|ref|ZP_20154737.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|433021308|ref|ZP_20209376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|433045591|ref|ZP_20233057.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|433050521|ref|ZP_20237831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|433055680|ref|ZP_20242824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|433065520|ref|ZP_20252414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|433070459|ref|ZP_20257212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|433094450|ref|ZP_20280692.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|433132641|ref|ZP_20318055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|433137312|ref|ZP_20322629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|433161209|ref|ZP_20346015.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|433180924|ref|ZP_20365288.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|433196113|ref|ZP_20380070.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|433205807|ref|ZP_20389541.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|442594682|ref|ZP_21012561.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444966243|ref|ZP_21283783.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|445031633|ref|ZP_21347283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|445047930|ref|ZP_21363163.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|445053517|ref|ZP_21368513.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|445061494|ref|ZP_21373996.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
gi|13364508|dbj|BAB38454.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73858020|gb|AAZ90727.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|85676801|dbj|BAE78051.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K12 substr.
W3110]
gi|169891341|gb|ACB05048.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|192931322|gb|EDV83924.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218354489|emb|CAV01337.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218363375|emb|CAR01028.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218434767|emb|CAR15700.1| tRNA-dihydrouridine synthase A [Escherichia coli UMN026]
gi|253975886|gb|ACT41557.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|257761990|dbj|BAI33487.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|260451122|gb|ACX41544.1| TIM-barrel protein, yjbN family [Escherichia coli DH1]
gi|290765338|gb|ADD59299.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300315715|gb|EFJ65499.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|300356606|gb|EFJ72476.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300397973|gb|EFJ81511.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|300401808|gb|EFJ85346.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300415447|gb|EFJ98757.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300419477|gb|EFK02788.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300453720|gb|EFK17340.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300456844|gb|EFK20337.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300523922|gb|EFK44991.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300529377|gb|EFK50439.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300841948|gb|EFK69708.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|300843456|gb|EFK71216.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301076659|gb|EFK91465.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|306907916|gb|EFN38417.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|308120516|gb|EFO57778.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|315063373|gb|ADT77700.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|315138603|dbj|BAJ45762.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|315254721|gb|EFU34689.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|315617417|gb|EFU98023.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|323164554|gb|EFZ50355.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|323182152|gb|EFZ67562.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|323380563|gb|ADX52831.1| TIM-barrel protein, yjbN family [Escherichia coli KO11FL]
gi|323946182|gb|EGB42216.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|324017108|gb|EGB86327.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|331035765|gb|EGI08003.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331056769|gb|EGI28763.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331061826|gb|EGI33751.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331071642|gb|EGI42978.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|338767747|gb|EGP22557.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|342930161|gb|EGU98883.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|345331951|gb|EGW64409.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|345347312|gb|EGW79624.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|345352482|gb|EGW84730.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|345356864|gb|EGW89064.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|345368782|gb|EGX00778.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|354856290|gb|EHF16750.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|354860856|gb|EHF21297.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|354861381|gb|EHF21821.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|354870086|gb|EHF30492.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|354874485|gb|EHF34853.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|354883727|gb|EHF44042.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|354887989|gb|EHF48252.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|354891673|gb|EHF51899.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|354903374|gb|EHF63476.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907020|gb|EHF67087.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908961|gb|EHF68998.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354911087|gb|EHF71093.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354919640|gb|EHF79582.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|359334159|dbj|BAL40606.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MDS42]
gi|371596951|gb|EHN85777.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|373247535|gb|EHP66976.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|377888304|gb|EHU52775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|377904979|gb|EHU69256.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|377952740|gb|EHV16321.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|377956034|gb|EHV19585.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|377968295|gb|EHV31689.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|377987624|gb|EHV50809.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|377991087|gb|EHV54241.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|378033676|gb|EHV96251.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|378122378|gb|EHW83806.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|378123054|gb|EHW84472.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|378143086|gb|EHX04279.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|378145028|gb|EHX06195.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|378153792|gb|EHX14871.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|378194748|gb|EHX55258.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|378194907|gb|EHX55415.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|378196913|gb|EHX57397.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|378207648|gb|EHX68038.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|378211661|gb|EHX71997.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|378223175|gb|EHX83403.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|378225785|gb|EHX85979.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|378238668|gb|EHX98662.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|378241515|gb|EHY01481.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|378249386|gb|EHY09295.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|378254588|gb|EHY14451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|384377180|gb|EIE35076.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|384471302|gb|EIE55384.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|385708038|gb|EIG45058.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|385708313|gb|EIG45326.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|386124171|gb|EIG72754.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386143977|gb|EIG90444.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|386150564|gb|EIH01853.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|386155656|gb|EIH12007.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|386181655|gb|EIH64416.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|386213292|gb|EII23721.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|386220079|gb|EII36543.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|386225464|gb|EII47794.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|386227961|gb|EII55317.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|386233894|gb|EII65874.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|386798731|gb|AFJ31765.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|390636843|gb|EIN16408.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|390656199|gb|EIN34085.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|390676800|gb|EIN52879.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|390736690|gb|EIO08014.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|390847338|gb|EIP10884.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|390857612|gb|EIP20039.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|391276753|gb|EIQ35515.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|391279919|gb|EIQ38599.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|391291273|gb|EIQ49683.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|391300720|gb|EIQ58628.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|391308710|gb|EIQ66400.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|404293218|gb|EEH72154.2| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|408073042|gb|EKH07351.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|408079601|gb|EKH13716.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|408087883|gb|EKH21285.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|408092649|gb|EKH25834.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|408124563|gb|EKH55227.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|408134422|gb|EKH64253.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|408135989|gb|EKH65748.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|408143289|gb|EKH72597.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|408151617|gb|EKH80104.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|408160868|gb|EKH88859.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|408189214|gb|EKI14964.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|408196910|gb|EKI22184.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|408322390|gb|EKJ38384.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|408333436|gb|EKJ48385.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|408340122|gb|EKJ54631.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|408544476|gb|EKK21929.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|408544935|gb|EKK22376.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|408562418|gb|EKK38580.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|408562657|gb|EKK38814.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|408563515|gb|EKK39647.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|408607240|gb|EKK80644.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|412972029|emb|CCJ46699.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|427200763|gb|EKV71175.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|427237348|gb|EKW04891.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|427241671|gb|EKW09095.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|427256764|gb|EKW22915.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|427256854|gb|EKW23002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|427274140|gb|EKW38801.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|427296711|gb|EKW59759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|427309915|gb|EKW72201.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|427325460|gb|EKW86900.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429250691|gb|EKY35341.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429354130|gb|EKY90834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429354983|gb|EKY91677.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429355975|gb|EKY92658.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429369700|gb|EKZ06275.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429369995|gb|EKZ06562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429371740|gb|EKZ08291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429385867|gb|EKZ22319.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429387816|gb|EKZ24247.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429387996|gb|EKZ24423.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429398944|gb|EKZ35269.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429401059|gb|EKZ37368.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429403621|gb|EKZ39903.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412014|gb|EKZ48212.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429414147|gb|EKZ50323.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422266|gb|EKZ58386.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429425143|gb|EKZ61234.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429430862|gb|EKZ66913.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429437739|gb|EKZ73737.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441594|gb|EKZ77563.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429446936|gb|EKZ82861.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429453175|gb|EKZ89044.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458229|gb|EKZ94058.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430881972|gb|ELC05177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|430894939|gb|ELC17215.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|430922110|gb|ELC42874.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|430949756|gb|ELC69182.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|430984614|gb|ELD01236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|431001219|gb|ELD16806.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|431011961|gb|ELD26031.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|431016488|gb|ELD30033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|431046854|gb|ELD56945.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|431065903|gb|ELD74652.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|431066212|gb|ELD74956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|431069508|gb|ELD77836.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|431075033|gb|ELD82568.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|431102271|gb|ELE07097.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|431135527|gb|ELE37403.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|431154496|gb|ELE55299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|431167158|gb|ELE67442.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|431176537|gb|ELE76495.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|431205121|gb|ELF03629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|431206103|gb|ELF04535.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|431216417|gb|ELF14055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|431226748|gb|ELF23906.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|431233796|gb|ELF29382.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|431248629|gb|ELF42822.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|431269061|gb|ELF60420.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|431288895|gb|ELF79650.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|431292445|gb|ELF82833.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|431314624|gb|ELG02557.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|431321247|gb|ELG08860.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|431322968|gb|ELG10525.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|431351518|gb|ELG38304.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|431358555|gb|ELG45206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|431358872|gb|ELG45517.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|431381247|gb|ELG65878.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|431389915|gb|ELG73624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|431394112|gb|ELG77653.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|431406404|gb|ELG89624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|431410675|gb|ELG93831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|431422141|gb|ELH04335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|431450338|gb|ELH30825.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|431458467|gb|ELH38791.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|431466054|gb|ELH46133.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|431475178|gb|ELH54982.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|431476578|gb|ELH56368.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|431484867|gb|ELH64538.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|431525831|gb|ELI02605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|431550752|gb|ELI24740.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|431560792|gb|ELI34299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|431564308|gb|ELI37484.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|431577136|gb|ELI49788.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|431577648|gb|ELI50278.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|431605804|gb|ELI75191.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|431640965|gb|ELJ08710.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|431652445|gb|ELJ19595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|431672194|gb|ELJ38466.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|431696969|gb|ELJ62118.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|431712298|gb|ELJ76595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|431714749|gb|ELJ78928.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|441605221|emb|CCP97820.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444571367|gb|ELV47851.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|444636108|gb|ELW09511.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|444656499|gb|ELW29023.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|444658560|gb|ELW31011.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|444666168|gb|ELW38246.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
Length = 345
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|168263436|ref|ZP_02685409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|417369857|ref|ZP_12140887.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|205348025|gb|EDZ34656.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353583306|gb|EHC43699.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
Length = 332
Score = 288 bits (738), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILASVD 249
>gi|432452323|ref|ZP_19694574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|433035989|ref|ZP_20223668.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
gi|430976481|gb|ELC93347.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|431544850|gb|ELI19661.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
Length = 345
Score = 288 bits (738), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/236 (56%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|421777222|ref|ZP_16213820.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|442598785|ref|ZP_21016534.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|408457717|gb|EKJ81510.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|441652543|emb|CCQ02085.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 339
Score = 288 bits (738), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|15804641|ref|NP_290682.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EDL933]
gi|12519000|gb|AAG59247.1|AE005638_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 345
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|157157144|ref|YP_001465549.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|157163519|ref|YP_001460837.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|417642085|ref|ZP_12292207.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
gi|157069199|gb|ABV08454.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|157079174|gb|ABV18882.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|345389602|gb|EGX19407.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
Length = 347
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 29 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 88
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 89 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 148
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 149 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 208
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 209 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 268
Query: 251 SN 252
+
Sbjct: 269 GS 270
>gi|415857056|ref|ZP_11531885.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|417704087|ref|ZP_12353190.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|417714396|ref|ZP_12363352.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|417719249|ref|ZP_12368136.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|417725059|ref|ZP_12373851.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|417730310|ref|ZP_12378999.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|417735422|ref|ZP_12384064.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|417740171|ref|ZP_12388742.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|417745259|ref|ZP_12393779.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|417830660|ref|ZP_12477195.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|418258885|ref|ZP_12882011.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
gi|420322314|ref|ZP_14824136.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|420333272|ref|ZP_14834914.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|420343712|ref|ZP_14845176.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|420375879|ref|ZP_14875691.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|313648753|gb|EFS13193.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|332751993|gb|EGJ82386.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|332752162|gb|EGJ82554.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|332753251|gb|EGJ83632.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|332764755|gb|EGJ94984.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|332999047|gb|EGK18636.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|332999143|gb|EGK18730.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|333014208|gb|EGK33564.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|333014419|gb|EGK33770.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|335572601|gb|EGM58972.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|391245817|gb|EIQ05083.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|391246770|gb|EIQ06028.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|391263439|gb|EIQ22445.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|391308582|gb|EIQ66278.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|397895072|gb|EJL11506.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
Length = 345
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|432856293|ref|ZP_20083733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
gi|431396119|gb|ELG79605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
Length = 345
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|260583380|ref|ZP_05851150.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
gi|260093566|gb|EEW77484.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
Length = 327
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRCRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYTRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|170021953|ref|YP_001726907.1| tRNA-dihydrouridine synthase A [Escherichia coli ATCC 8739]
gi|251787304|ref|YP_003001608.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253775323|ref|YP_003038154.1| tRNA-dihydrouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254290735|ref|YP_003056483.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300929788|ref|ZP_07145240.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|312974158|ref|ZP_07788329.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|386707290|ref|YP_006171137.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|422767922|ref|ZP_16821647.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|422787897|ref|ZP_16840634.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|422793652|ref|ZP_16846347.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|425307883|ref|ZP_18697539.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|432487842|ref|ZP_19729744.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|432578320|ref|ZP_19814762.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|433175983|ref|ZP_20360478.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
gi|169756881|gb|ACA79580.1| TIM-barrel protein, yjbN family [Escherichia coli ATCC 8739]
gi|242379577|emb|CAQ34398.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253326367|gb|ACT30969.1| TIM-barrel protein, yjbN family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253980042|gb|ACT45712.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300462294|gb|EFK25787.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|310331692|gb|EFP98948.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|323935538|gb|EGB31869.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|323960455|gb|EGB56088.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|323969817|gb|EGB65098.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|383105458|gb|AFG42967.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|408224213|gb|EKI47936.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|431012815|gb|ELD26575.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|431110668|gb|ELE14586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|431685672|gb|ELJ51240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
Length = 345
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|170026071|ref|YP_001722576.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis YPIII]
gi|169752605|gb|ACA70123.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis YPIII]
Length = 345
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 130/241 (53%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
+Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPV 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 76 ALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNR 185
MRD+V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR
Sbjct: 136 MRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENR 195
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 196 EVPPLDYERVYQLKCDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQV 255
Query: 246 D 246
D
Sbjct: 256 D 256
>gi|68249213|ref|YP_248325.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
gi|68057412|gb|AAX87665.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
Length = 327
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|197247584|ref|YP_002149157.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|417515016|ref|ZP_12178665.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|440763290|ref|ZP_20942332.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766472|ref|ZP_20945462.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440771036|ref|ZP_20949961.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|197211287|gb|ACH48684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|353632051|gb|EHC79212.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|436420321|gb|ELP18186.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436422620|gb|ELP20452.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436422882|gb|ELP20705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
Length = 332
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|56416043|ref|YP_153118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161617371|ref|YP_001591336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552533|ref|ZP_02346286.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|197364970|ref|YP_002144607.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|416423360|ref|ZP_11690749.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433040|ref|ZP_11696566.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416442269|ref|ZP_11702356.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447349|ref|ZP_11705794.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416455473|ref|ZP_11711098.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416457699|ref|ZP_11712301.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416482962|ref|ZP_11723950.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416494314|ref|ZP_11728126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416499548|ref|ZP_11730859.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416506579|ref|ZP_11734797.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416543311|ref|ZP_11752093.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416559764|ref|ZP_11760856.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568949|ref|ZP_11765137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416580782|ref|ZP_11772173.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416587601|ref|ZP_11776137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416592012|ref|ZP_11778833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599971|ref|ZP_11783918.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416607446|ref|ZP_11788517.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615753|ref|ZP_11793665.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618197|ref|ZP_11794478.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416633858|ref|ZP_11802199.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416644324|ref|ZP_11806707.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416646520|ref|ZP_11807786.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416656140|ref|ZP_11813116.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416669559|ref|ZP_11819525.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416676793|ref|ZP_11822022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416693218|ref|ZP_11826628.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416708650|ref|ZP_11833512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416709933|ref|ZP_11834038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720356|ref|ZP_11842070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726058|ref|ZP_11846119.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416731500|ref|ZP_11849415.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416735649|ref|ZP_11851533.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745080|ref|ZP_11857038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759652|ref|ZP_11864479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763974|ref|ZP_11867648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770480|ref|ZP_11871832.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417377338|ref|ZP_12146282.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|418482816|ref|ZP_13051829.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418486738|ref|ZP_13055684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496396|ref|ZP_13062830.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501035|ref|ZP_13067426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503593|ref|ZP_13069952.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508252|ref|ZP_13074555.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418523688|ref|ZP_13089676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|56130300|gb|AAV79806.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161366735|gb|ABX70503.1| hypothetical protein SPAB_05226 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197096447|emb|CAR62053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205322837|gb|EDZ10676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|322615399|gb|EFY12319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618459|gb|EFY15348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622129|gb|EFY18979.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627200|gb|EFY23992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631160|gb|EFY27924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637622|gb|EFY34323.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643604|gb|EFY40159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648339|gb|EFY44798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654648|gb|EFY50968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659608|gb|EFY55851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662183|gb|EFY58399.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666071|gb|EFY62249.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672491|gb|EFY68602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675920|gb|EFY71991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680405|gb|EFY76443.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684701|gb|EFY80705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195965|gb|EFZ81131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197105|gb|EFZ82246.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201777|gb|EFZ86841.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323213302|gb|EFZ98104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215672|gb|EGA00416.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222095|gb|EGA06481.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226506|gb|EGA10712.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229131|gb|EGA13260.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236259|gb|EGA20335.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237621|gb|EGA21682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241713|gb|EGA25742.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248140|gb|EGA32077.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254530|gb|EGA38341.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258410|gb|EGA42087.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259690|gb|EGA43324.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265963|gb|EGA49459.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270405|gb|EGA53853.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353590260|gb|EHC48829.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|363555177|gb|EHL39409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363575485|gb|EHL59336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363576956|gb|EHL60782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366056826|gb|EHN21131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062698|gb|EHN26927.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366067567|gb|EHN31717.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366071921|gb|EHN36013.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366072663|gb|EHN36751.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366079507|gb|EHN43489.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366831210|gb|EHN58076.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372208000|gb|EHP21496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|30064638|ref|NP_838809.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|56480527|ref|NP_709871.2| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 301]
gi|30042897|gb|AAP18620.1| hypothetical protein S3574 [Shigella flexneri 2a str. 2457T]
gi|56384078|gb|AAN45578.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 339
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|226356731|ref|YP_002786471.1| tRNA-dihydrouridine synthase A [Deinococcus deserti VCD115]
gi|226318721|gb|ACO46717.1| putative tRNA-dihydrouridine synthase A [Deinococcus deserti
VCD115]
Length = 346
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 124/236 (52%), Positives = 175/236 (74%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR+FHR +TR + LYTEM TT AIL G+++ L FN EHP+A Q+
Sbjct: 15 RLSVAPMMDWTDRHCRVFHRTLTRRTLLYTEMVTTGAILHGDRERHLGFNRVEHPVALQL 74
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA+ ++ + +GYDEINLNCGCPS+RV +G FGA LM P +V+ ++AMR
Sbjct: 75 GGSDPAALAECTRMAEDYGYDEINLNCGCPSDRVSSGSFGACLMGTPDVVARAVEAMRGV 134
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVKHRIGIDD++SY+ + FV TV +AGC+TFIVHAR A+L L+PK+NR+IP L
Sbjct: 135 TRLPVTVKHRIGIDDLDSYEHLTRFVRTVEAAGCQTFIVHARKAWLSGLSPKENREIPPL 194
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+Y V LK DFP L +++NGG+ ++ LN+ DGVM+GR AY+ P++++ D
Sbjct: 195 RYEVVEQLKADFPHLTVVLNGGVLDLRQAQGALNWADGVMIGRAAYQTPYVLAAAD 250
>gi|16767493|ref|NP_463108.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991432|ref|ZP_02572531.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|374981747|ref|ZP_09723070.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378447562|ref|YP_005235194.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378453175|ref|YP_005240535.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378702086|ref|YP_005184044.1| hypothetical protein SL1344_4179 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378986919|ref|YP_005250075.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378991512|ref|YP_005254676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703483|ref|YP_005245211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498823|ref|YP_005399512.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422028484|ref|ZP_16374783.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033534|ref|ZP_16379602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427557379|ref|ZP_18930106.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427575211|ref|ZP_18934696.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427597005|ref|ZP_18939614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427621382|ref|ZP_18944496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427645326|ref|ZP_18949384.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658495|ref|ZP_18954104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663766|ref|ZP_18959011.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427681699|ref|ZP_18963902.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427801900|ref|ZP_18969388.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|38604955|sp|Q8ZKH4.1|DUSA_SALTY RecName: Full=tRNA-dihydrouridine synthase A
gi|16422801|gb|AAL23067.1| putative TIM-barrel enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205330107|gb|EDZ16871.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261249341|emb|CBG27204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996554|gb|ACY91439.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160735|emb|CBW20266.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915348|dbj|BAJ39322.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223111|gb|EFX48181.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323132582|gb|ADX20012.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332991059|gb|AEF10042.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380465644|gb|AFD61047.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414011328|gb|EKS95293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414012607|gb|EKS96521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414012831|gb|EKS96738.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414026899|gb|EKT10156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027440|gb|EKT10679.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030156|gb|EKT13291.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414040922|gb|EKT23520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414041624|gb|EKT24189.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046045|gb|EKT28398.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055052|gb|EKT36973.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414060828|gb|EKT42320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|269137592|ref|YP_003294292.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|387866350|ref|YP_005697819.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
gi|267983252|gb|ACY83081.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|304557663|gb|ADM40327.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
Length = 352
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/244 (54%), Positives = 174/244 (71%), Gaps = 1/244 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ ++ SIAPM++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 29 FPSQRFSIAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLA 88
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G + P LA+ A + + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM
Sbjct: 89 LQLGGSNPADLARCAHLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAM 148
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID +SY F+ DF+GTV+ G C TFIVHAR A+L L+PK+NR+
Sbjct: 149 RDVVSIPVTVKTRIGIDAQDSYPFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPKENRE 208
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP+ I +NGG+K E HL ++DGVM+GREAY NP +++ D
Sbjct: 209 VPPLDYPRVYRLKQDFPQFTIALNGGVKRLDEALTHLQHVDGVMMGREAYHNPGILAQVD 268
Query: 247 LNYY 250
+
Sbjct: 269 RQLF 272
>gi|417297156|ref|ZP_12084403.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|419218451|ref|ZP_13761435.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|419257779|ref|ZP_13800272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|420112425|ref|ZP_14622224.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|420122253|ref|ZP_14631241.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|420126332|ref|ZP_14635068.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|420130440|ref|ZP_14638932.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|424751353|ref|ZP_18179383.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|378056767|gb|EHW19006.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|378095794|gb|EHW57577.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|386260600|gb|EIJ16074.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|394392213|gb|EJE69002.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|394414595|gb|EJE88536.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|394422403|gb|EJE95764.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|394433682|gb|EJF05689.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|421939583|gb|EKT97098.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 339
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|110807934|ref|YP_691454.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5 str. 8401]
gi|384545679|ref|YP_005729743.1| yjbN family TIM-barrel protein [Shigella flexneri 2002017]
gi|417709427|ref|ZP_12358449.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|424840305|ref|ZP_18264942.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
gi|110617482|gb|ABF06149.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281603466|gb|ADA76450.1| TIM-barrel protein, yjbN family [Shigella flexneri 2002017]
gi|332998117|gb|EGK17721.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|383469357|gb|EID64378.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
Length = 347
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 29 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 88
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 89 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 148
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 149 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 208
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 209 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 268
Query: 251 SN 252
+
Sbjct: 269 GS 270
>gi|420283680|ref|ZP_14785905.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|420301698|ref|ZP_14803733.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444977557|ref|ZP_21294612.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
gi|390778347|gb|EIO46105.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|390820291|gb|EIO86597.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444587450|gb|ELV62901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
Length = 345
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|416900741|ref|ZP_11929910.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|417116352|ref|ZP_11967213.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
gi|422801769|ref|ZP_16850264.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|323965711|gb|EGB61163.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|327250393|gb|EGE62106.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|386138896|gb|EIG80051.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
Length = 345
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAETRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|188494852|ref|ZP_03002122.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
gi|188490051|gb|EDU65154.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
Length = 347
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 29 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 88
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 89 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 148
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 149 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 208
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 209 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 268
Query: 251 SN 252
+
Sbjct: 269 GS 270
>gi|89075955|ref|ZP_01162327.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
gi|89048304|gb|EAR53883.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
Length = 348
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 180/250 (72%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ + ++ S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N EE
Sbjct: 20 VTGDFPMQRFSVAPMLDWTDRHCRYFHRLMSKEALLYTEMVTTGAIIHGKGDFLAYNEEE 79
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G + LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C
Sbjct: 80 HPLALQLGGSNSIDLARCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGEAELVAQC 139
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
+ AMRD V+I +TVK RIGIDD +SY+F++DF+ VS GC F +HAR A+L L+PK
Sbjct: 140 VTAMRDVVDIPVTVKTRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPK 199
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DF L + INGGIKT +E++ HL ++DGVM+GREAY++P+LM
Sbjct: 200 ENREIPPLDYPRVYQLKQDFAHLTMAINGGIKTFEEMEAHLKHMDGVMVGREAYQSPYLM 259
Query: 243 SNFDLNYYSN 252
+ D + +
Sbjct: 260 AEVDQRLFGS 269
>gi|416802331|ref|ZP_11886116.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|320649492|gb|EFX18016.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
Length = 339
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDRTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|261365796|ref|ZP_05978679.1| tRNA dihydrouridine synthase A [Neisseria mucosa ATCC 25996]
gi|288565649|gb|EFC87209.1| tRNA dihydrouridine synthase A [Neisseria mucosa ATCC 25996]
Length = 334
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 185/252 (73%), Gaps = 2/252 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNA 61
M + R++S+APM++ TDRH R RQITR +WLY+EM + AI+ G+K L FN
Sbjct: 1 MPQTNLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNE 60
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E P+A Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV+
Sbjct: 61 GEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVA 120
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLN 180
DC+ AM+D+V+I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+
Sbjct: 121 DCLNAMQDAVQIPVTVKHRIGVDRQIEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR +P LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP
Sbjct: 181 PKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPM 240
Query: 241 LMSNFDLNYYSN 252
+M +D +Y +
Sbjct: 241 VMHEWDRLFYGD 252
>gi|290512395|ref|ZP_06551762.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
gi|289775390|gb|EFD83391.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
Length = 331
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 69 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCEFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E L L ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARLQLEHMDGVMVGREAYQNPGILASVD 248
>gi|197263333|ref|ZP_03163407.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241588|gb|EDY24208.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|206576636|ref|YP_002241010.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
gi|206565694|gb|ACI07470.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 70 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDVVSIPVTVKTRIGIDDQDSYEFLCEFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E L L ++DGVM+GREAY+NP ++++ D
Sbjct: 190 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARLQLEHMDGVMVGREAYQNPGILASVD 249
>gi|16762924|ref|NP_458541.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144411|ref|NP_807753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213051927|ref|ZP_03344805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424511|ref|ZP_03357308.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582871|ref|ZP_03364697.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213614451|ref|ZP_03371277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647516|ref|ZP_03377569.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824651|ref|ZP_06544178.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378962333|ref|YP_005219819.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|38604946|sp|Q8Z1T1.1|DUSA_SALTI RecName: Full=tRNA-dihydrouridine synthase A
gi|25329941|pir||AB1016 conserved hypothetical protein STY4439 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505231|emb|CAD09227.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140049|gb|AAO71613.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374356205|gb|AEZ47966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|86148209|ref|ZP_01066506.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218708347|ref|YP_002415968.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
gi|85833979|gb|EAQ52140.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218321366|emb|CAV17316.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
Length = 333
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
SKY ++S+APM++ TDRHCR FHR +++ + LYTEM TT AIL K L++N +EH
Sbjct: 6 TSKYAANRLSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYNEQEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+
Sbjct: 66 PLALQLGGSNPVDLAACAKLAGERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
AM++ +I ITVK RIGIDD +SY+F+ FV TVS GC F +HAR A+L L+PK+
Sbjct: 126 SAMKEVTDIPITVKTRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ Y +KKDF +L I +NGGI T ++ HL ++DGVM+GREAY +PF+++
Sbjct: 186 NREIPPLDYDRAYQIKKDFSDLVIAVNGGITTLEQTKEHLQHLDGVMIGREAYHSPFILA 245
Query: 244 NFD 246
D
Sbjct: 246 EVD 248
>gi|260858159|ref|YP_003232050.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|419263959|ref|ZP_13806360.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|419270071|ref|ZP_13812410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|419275438|ref|ZP_13817720.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|419287034|ref|ZP_13829188.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|425382459|ref|ZP_18766425.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|432677230|ref|ZP_19912667.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
gi|257756808|dbj|BAI28310.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|378100726|gb|EHW62418.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|378105988|gb|EHW67624.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|378111959|gb|EHW73540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|378123875|gb|EHW85291.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|408292570|gb|EKJ11081.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|431209328|gb|ELF07437.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
Length = 345
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|416530644|ref|ZP_11745107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534891|ref|ZP_11747379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416550057|ref|ZP_11755735.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|417471394|ref|ZP_12167386.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|418790328|ref|ZP_13346105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794887|ref|ZP_13350602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418796080|ref|ZP_13351772.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|353622983|gb|EHC72385.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|363550270|gb|EHL34598.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363566997|gb|EHL51010.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363569120|gb|EHL53084.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|392758711|gb|EJA15577.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392760313|gb|EJA17151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392770949|gb|EJA27670.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|332163190|ref|YP_004299767.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310201|ref|YP_006006257.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243182|ref|ZP_12869673.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550712|ref|ZP_20506755.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica IP 10393]
gi|318603925|emb|CBY25423.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667420|gb|ADZ44064.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861940|emb|CBX72109.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica W22703]
gi|351777380|gb|EHB19598.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431787811|emb|CCO69795.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica IP 10393]
Length = 348
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/240 (54%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 23 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKADYLAYSEQDHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 83 LQLGGSDPQALAHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEASLVADCIKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDELDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 VPPLNYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHVDGVMMGREAYQNPTILTQVD 262
>gi|420376104|ref|ZP_14875894.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|391307140|gb|EIQ64879.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
Length = 332
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/259 (50%), Positives = 183/259 (70%), Gaps = 1/259 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 STAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
+AMRD V I +TVK RIGIDD +SY+F+ DF+ VS G C FI+HAR A+L L+PK+
Sbjct: 127 EAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINMVSGKGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y+ VY LK+DFP+L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYDRVYQLKRDFPQLTMSINGGIKSLEEAKTHLQHMDGVMVGREAYQNPGILA 246
Query: 244 NFDLNYYSNLPQYKIPTRI 262
+ D ++ + P +
Sbjct: 247 SVDREIFAATTEDTDPVTV 265
>gi|331675581|ref|ZP_08376328.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
gi|331067189|gb|EGI38597.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
Length = 345
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|444353700|ref|YP_007389844.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
gi|443904530|emb|CCG32304.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
Length = 354
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ + + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEH
Sbjct: 29 STAFAAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEH 88
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCI
Sbjct: 89 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAALVADCI 148
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 149 KAMRDVVSIPVTVKTRIGIDDRDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKE 208
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y V+ LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP +++
Sbjct: 209 NREIPPLDYPRVWQLKRDFPHLTMAINGGIKSLAEAKQQLEHMDGVMVGREAYQNPGILA 268
Query: 244 NFD 246
+ D
Sbjct: 269 SVD 271
>gi|415785370|ref|ZP_11492920.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
gi|323155612|gb|EFZ41787.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
Length = 347
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 29 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 88
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 89 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVV 148
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 149 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 208
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 209 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 268
Query: 251 SN 252
+
Sbjct: 269 GS 270
>gi|238794664|ref|ZP_04638270.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
gi|238726053|gb|EEQ17601.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
Length = 343
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/249 (53%), Positives = 181/249 (72%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 17 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKADYLAYSEQDHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 77 LQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEAELVADCIKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDQLDSYEFLCEFVQTVADRGECDIFTIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 197 VPPLDYERVYQLKRDFPTLTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVD 256
Query: 247 LNYY-SNLP 254
+ +N P
Sbjct: 257 RELFDANAP 265
>gi|383457478|ref|YP_005371467.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
gi|380732639|gb|AFE08641.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
Length = 337
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 174/241 (72%), Gaps = 1/241 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+ +APMM+ TDRHCR F R I+R++ LYTEM TT A+L G + LDF EHP+A Q+G
Sbjct: 14 LCVAPMMDWTDRHCRYFFRLISRHTLLYTEMVTTGAVLHGKRDRLLDFTPAEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V
Sbjct: 74 GSEPADLAASARIGEEWGYDEINLNVGCPSDRVQSGRFGACLMAEPDLVARGVAAMREAV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI IDD+ + + DFV VS+AGC FIVHAR A+L+ L+PK+NR +P L+
Sbjct: 134 RIPVTVKSRIAIDDMEEWPTLEDFVRRVSAAGCTRFIVHARKAWLQGLSPKENRDVPPLR 193
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK ++P L+I +NGGIKT HL +DGVM+GR Y++P+L+++ D ++
Sbjct: 194 YDLVHRLKAEYPHLDISLNGGIKTLDAAAEHLGRVDGVMMGRAPYESPYLLADADRRFFG 253
Query: 252 N 252
Sbjct: 254 G 254
>gi|251788352|ref|YP_003003073.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
gi|247536973|gb|ACT05594.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
Length = 344
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/239 (56%), Positives = 179/239 (74%), Gaps = 1/239 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
++++ SIAPM++ TDRHCR FHR +++++ LYTEM TT AIL K L ++ EEHP+A
Sbjct: 24 HRQRFSIAPMLDWTDRHCRYFHRLLSQHALLYTEMVTTGAILHGKGDYLAYSDEEHPLAL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P LA+ A + ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR
Sbjct: 84 QLGGSDPAALAQCALLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADCVAAMR 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD +SY+F+ DF+ TVS GC TFIVHAR A+L L+PK+NR+I
Sbjct: 144 ERVGIPVTVKTRIGIDDQDSYEFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREI 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT + HL ++DGVM+GREAY+NP +++ D
Sbjct: 204 PPLDYPRVYQLKRDFPSLTVAINGGIKTLADAQQHLQHVDGVMVGREAYQNPGMLAQVD 262
>gi|54310405|ref|YP_131425.1| tRNA-dihydrouridine synthase A [Photobacterium profundum SS9]
gi|46914846|emb|CAG21623.1| putative NifR3/Smm1 family protein [Photobacterium profundum SS9]
Length = 346
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/249 (54%), Positives = 182/249 (73%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
NS Y ++ S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L FN EE+
Sbjct: 19 NSGYPMQRFSVAPMLDWTDRHCRYFHRLLSDNALLYTEMVTTGAIIHGKGDFLTFNEEEN 78
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G + P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+
Sbjct: 79 PVALQLGGSNPVDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEADLVALCV 138
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQ 183
+MR+ V+I +TVK RIGID+ +SY F+ DF+GTV+ +GC F VHAR A+LK L+PK+
Sbjct: 139 SSMREVVDIPVTVKTRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKE 198
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP + + INGGIKT E++ HL ++DGVM+GREAY+NP+LM+
Sbjct: 199 NREIPPLDYPRVYQLKRDFPNIIMAINGGIKTFDEMEEHLKHMDGVMVGREAYQNPYLMA 258
Query: 244 NFDLNYYSN 252
D + +
Sbjct: 259 EVDQRLFGS 267
>gi|157963384|ref|YP_001503418.1| tRNA-dihydrouridine synthase A [Shewanella pealeana ATCC 700345]
gi|157848384|gb|ABV88883.1| TIM-barrel protein, yjbN family [Shewanella pealeana ATCC 700345]
Length = 328
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 174/236 (73%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R SIAPM++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+
Sbjct: 8 RTFSIAPMLDWTDRHYRYFARLMSSQTLLYTEMVTTGAILHGRGDYLAYNQEEHPLALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 68 GGSNPVDLAACAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVTAMKQV 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGID+ +SY+F+ F+ TV +AGC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 128 VDIPVTVKTRIGIDEQDSYEFLTQFIDTVKAAGCEEFIIHARKAWLQGLSPKENREIPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+D+PEL I INGG+KT +E HL ++DGVM+GREAY+NP++++ D
Sbjct: 188 DYERVYQLKRDYPELNISINGGVKTLEECQTHLQHLDGVMVGREAYQNPYILAEVD 243
>gi|418866047|ref|ZP_13420511.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|392840561|gb|EJA96096.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 332
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKIRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|168236934|ref|ZP_02661992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736682|ref|YP_002117177.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194712184|gb|ACF91405.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289961|gb|EDY29320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 345
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 174/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 262
>gi|145698340|ref|NP_418473.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238903158|ref|YP_002928954.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|293402687|ref|ZP_06646784.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|293407781|ref|ZP_06651621.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|293476353|ref|ZP_06664761.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|298378215|ref|ZP_06988099.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|383181363|ref|YP_005459368.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|387609842|ref|YP_006098698.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|419872880|ref|ZP_14394895.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444961024|ref|ZP_21278826.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444988293|ref|ZP_21305054.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|450229414|ref|ZP_21897771.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|450254166|ref|ZP_21902519.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
gi|3183570|sp|P32695.3|DUSA_ECOLI RecName: Full=tRNA-dihydrouridine synthase A
gi|38604936|sp|Q8X5V6.2|DUSA_ECO57 RecName: Full=tRNA-dihydrouridine synthase A
gi|145693211|gb|AAC77019.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238863713|gb|ACR65711.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|284924142|emb|CBG37241.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|291320806|gb|EFE60248.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|291429602|gb|EFF02616.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|291472032|gb|EFF14514.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|298280549|gb|EFI22050.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|388333035|gb|EIK99678.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444568211|gb|ELV44901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444588723|gb|ELV64087.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|449313057|gb|EMD03287.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|449313516|gb|EMD03722.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
Length = 330
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251
Query: 251 SN 252
+
Sbjct: 252 GS 253
>gi|416270359|ref|ZP_11642755.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|416298763|ref|ZP_11652086.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
gi|320174478|gb|EFW49618.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|320185261|gb|EFW60037.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
Length = 339
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|407362766|ref|ZP_11109298.1| tRNA-dihydrouridine synthase A [Pseudomonas mandelii JR-1]
Length = 339
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 171/242 (70%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ L N EHP+A Q+
Sbjct: 22 RFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQL 81
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+
Sbjct: 82 GGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDA 141
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L
Sbjct: 142 VSIPVTVKHRIGINGRDSYEELVDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPL 201
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK DFPELEI++NGGIKT + HL DGVMLGREAY NP++M+ D +
Sbjct: 202 RYDVAARLKADFPELEIVLNGGIKTLEACHAHLQTFDGVMLGREAYHNPYVMAEVDQQLF 261
Query: 251 SN 252
+
Sbjct: 262 GS 263
>gi|289679765|ref|ZP_06500655.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
FF5]
Length = 339
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 177/244 (72%), Gaps = 1/244 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A
Sbjct: 20 SRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDESEHPLAL 79
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 80 QLGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMR 139
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIP 199
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 200 PLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQ 259
Query: 249 YYSN 252
+ +
Sbjct: 260 LFGS 263
>gi|213970480|ref|ZP_03398608.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
T1]
gi|301383868|ref|ZP_07232286.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
Max13]
gi|302060592|ref|ZP_07252133.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
K40]
gi|213924798|gb|EEB58365.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
T1]
Length = 339
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/244 (53%), Positives = 175/244 (71%), Gaps = 1/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQL 260
Query: 250 YSNL 253
+ ++
Sbjct: 261 FGSV 264
>gi|238892522|ref|YP_002917256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238544838|dbj|BAH61189.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 331
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 176/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 9 FPAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 68
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 69 LQLGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAM 128
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 129 RDVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENRE 188
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y V+ LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP ++++ D
Sbjct: 189 IPPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARAQLEHMDGVMVGREAYQNPGILASVD 248
>gi|38604722|sp|Q7UBC5.2|DUSA_SHIFL RecName: Full=tRNA-dihydrouridine synthase A
Length = 330
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251
Query: 251 SN 252
+
Sbjct: 252 GS 253
>gi|422024011|ref|ZP_16370512.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
gi|414091411|gb|EKT53096.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
Length = 342
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/244 (54%), Positives = 180/244 (73%), Gaps = 1/244 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
I+S N + S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L F+ EE
Sbjct: 16 ISSYKNLNRFSVAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIYGKGDYLAFSEEE 75
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G ++P LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 76 QPVALQLGGSDPAALAQCAKLGEERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADC 135
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPK 182
IKAM+D V I +TVK RIGID+ +SY+F+ +F+ TV++ G C FI+HAR A+L L+PK
Sbjct: 136 IKAMKDVVSIPVTVKTRIGIDEQDSYEFLCEFIDTVATKGNCEMFIIHARKAWLSGLSPK 195
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L + INGG+KT +E HL ++DGVM+GREAY+NP ++
Sbjct: 196 ENREIPPLDYPRVYQLKRDFPHLTMAINGGVKTLEEAKEHLRHLDGVMVGREAYQNPSIL 255
Query: 243 SNFD 246
+ D
Sbjct: 256 TAVD 259
>gi|329896416|ref|ZP_08271515.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC3088]
gi|328921836|gb|EGG29207.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC3088]
Length = 319
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 128/224 (57%), Positives = 169/224 (75%), Gaps = 1/224 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM +DRHCR F R I + LYTEM TT A+L G+K + LDF+ EHP+A Q+G NEP
Sbjct: 1 MMEWSDRHCRYFWRLIAPQALLYTEMVTTGALLFGDKPYHLDFHDSEHPVALQLGGNEPD 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+ A++ Q+WGYDE+NLNCGCPS+RVQ+G FGA LM +P VS C++AMR++ ++ +T
Sbjct: 61 ALARCAELAQQWGYDEVNLNCGCPSDRVQSGGFGAYLMGEPKTVSACVQAMRNATDLPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+GID +SY+ + +FV TV+ AGCR F+VHAR A+LK L+PKQNR IP L Y +VY
Sbjct: 121 VKHRLGIDHQDSYEELLEFVQTVAEAGCRHFVVHARKAWLKGLSPKQNRDIPPLNYEWVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
LK+ PEL I+INGGI +E HL ++DGVM+GREAY +P+
Sbjct: 181 RLKQTLPELTIVINGGITQPQECVEHLQHVDGVMIGREAYYHPW 224
>gi|420339091|ref|ZP_14840642.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
gi|391256784|gb|EIQ15907.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
Length = 345
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|187731116|ref|YP_001882727.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
gi|187428108|gb|ACD07382.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
Length = 347
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 29 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 88
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 89 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 148
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 149 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPL 208
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 209 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 268
Query: 251 SN 252
+
Sbjct: 269 GS 270
>gi|82546382|ref|YP_410329.1| tRNA-dihydrouridine synthase A [Shigella boydii Sb227]
gi|417684897|ref|ZP_12334230.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|420327529|ref|ZP_14829273.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|420355686|ref|ZP_14856742.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|420383439|ref|ZP_14882851.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|421684504|ref|ZP_16124289.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
gi|81247793|gb|ABB68501.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332087840|gb|EGI92966.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|391247559|gb|EIQ06807.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|391271109|gb|EIQ29985.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|391296500|gb|EIQ54590.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|404336104|gb|EJZ62567.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
Length = 345
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|127511470|ref|YP_001092667.1| tRNA-dihydrouridine synthase A [Shewanella loihica PV-4]
gi|126636765|gb|ABO22408.1| TIM-barrel protein, yjbN family [Shewanella loihica PV-4]
Length = 329
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 176/236 (74%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R SIAPM++ TDRH R F R ++ LYTEM TT AI+ K L +N EEHP+A Q+
Sbjct: 12 RTFSIAPMLDWTDRHYRYFARLMSSELLLYTEMVTTGAIIHGKGDYLAYNQEEHPLALQL 71
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P+ LAK AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+ C+ AM +
Sbjct: 72 GGSNPEDLAKCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAQCVAAMNEV 131
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGID+ +SY+F+ +FV VS+AGC TFI+HAR A+L+ L+PK+NR+IP L
Sbjct: 132 VDIPVTVKTRIGIDEQDSYEFLTEFVDKVSAAGCDTFIIHARKAWLQGLSPKENREIPEL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y+ VY LK+D+P+L I INGG+KT +E HL +DGVM+GREAY+NP+L++ D
Sbjct: 192 DYDRVYRLKQDYPQLSISINGGVKTLEECGEHLKQLDGVMVGREAYQNPYLLAQVD 247
>gi|82523718|emb|CAI78499.1| coproporphyrinoben III oxidase and related Fe-S oxidoreductase
[uncultured beta proteobacterium]
Length = 391
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 206/346 (59%), Gaps = 34/346 (9%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
I E Y++ALL+D+E +LP I R+IHT+F GGGTPSL S G+D +L ++ L N
Sbjct: 45 IPEAAYIDALLLDLERALPDIWGRRIHTVFFGGGTPSLFSAAGIDRILTGVRTLTQLLPN 104
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
ITLEANP T E EKF + G+ R+S+GIQSFN+++L LGR HD +A+ A E+A
Sbjct: 105 AEITLEANPGTVEAEKFAGFREAGVTRVSLGIQSFNSQHLKALGRIHDDSEARRAAELAA 164
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
+F+ FNLDL++ALP QTL E + D++ A+ + PPHLS Y LT+EPNT F P ++P
Sbjct: 165 THFDTFNLDLMFALPGQTLDEALTDIDTALAFRPPHLSAYHLTLEPNTPFGHTAPPNLPD 224
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------------ 870
+D A M I + L ++YE SAY++ + S+HNLNYW+FGDYL
Sbjct: 225 DDVAADMHQAIEARLTEAGMQHYETSAYARPQHASRHNLNYWQFGDYLGIGAGAHSKLSF 284
Query: 871 ----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFER 908
G IA ++ + + L FEFM+NALRL +G LF ER
Sbjct: 285 HDRILRQMRTKHPQQYMDAVAQGTHIADARTLTRSDLPFEFMMNALRLNEGVPSALFEER 344
Query: 909 TGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
TG+ + + + L+ A GLL + +KPT G+ +LNDL ++FL
Sbjct: 345 TGLPLIVCTAGLEQARAKGLLAHDAMQLKPTLLGQRYLNDLLELFL 390
>gi|229845624|ref|ZP_04465749.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
gi|229811424|gb|EEP47128.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
Length = 327
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|16272577|ref|NP_438794.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae Rd KW20]
gi|260581551|ref|ZP_05849356.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
gi|1176344|sp|P44794.1|DUSA_HAEIN RecName: Full=tRNA-dihydrouridine synthase A
gi|1573630|gb|AAC22293.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260091796|gb|EEW75754.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
Length = 327
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|387769798|ref|ZP_10125995.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
gi|386905968|gb|EIJ70718.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
Length = 325
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 181/244 (74%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE 62
M + + + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+
Sbjct: 1 MPQTTFYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTAPAIIYAKYDHLDFDLS 60
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E+P+A Q+G ++P++L AK+ Q+ GY E+NLN GCPS+RVQNG FGA LM K LV++
Sbjct: 61 ENPVALQLGGSDPEQLQHCAKLAQERGYTEVNLNVGCPSDRVQNGMFGACLMAKSDLVAE 120
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
C+++M+ V+I +TVK RIGID+++SY+F+ +F+ V + GC FIVHAR A+L L+PK
Sbjct: 121 CVESMQKVVDIPVTVKTRIGIDELDSYEFLCEFIEKVHAKGCNEFIVHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L+I INGGIKT +EI HL Y+DGVM+GREAY+NP L+
Sbjct: 181 ENREIPPLNYERVYQLKRDFPQLKISINGGIKTIEEILTHLQYVDGVMVGREAYQNPSLL 240
Query: 243 SNFD 246
D
Sbjct: 241 GKID 244
>gi|377579682|ref|ZP_09808646.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377538999|dbj|GAB53811.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 332
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
+ + + SIAPM++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP
Sbjct: 8 TAFAAHRFSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+K
Sbjct: 68 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+N
Sbjct: 128 AMRDVVSIPVTVKTRIGIDDQDSYEFLCEFINTVSGKGECEMFIIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y VY LK+DFP L + INGGI + ++ HL ++DGVM+GREAY+NP +++
Sbjct: 188 REIPPLDYPRVYQLKRDFPHLTMSINGGITSLEQAKAHLEHMDGVMVGREAYQNPGMLAA 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|419803161|ref|ZP_14328335.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|419844573|ref|ZP_14367861.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
gi|385188331|gb|EIF35818.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|386417233|gb|EIJ31720.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
Length = 328
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 176/239 (73%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++ + LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G N+P +L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI M
Sbjct: 68 LQLGGNDPAQLKHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVAECIAEM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ DF+ V AGC+ FIVHAR A+L L+PK+NR+I
Sbjct: 128 QSVVNIPVTVKTRIGIDDLDSYEFLCDFIEKVHHAGCQEFIVHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y+ VY LKKDFP+L I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYDRVYQLKKDFPQLTIAINGGIKTIEEMKHHLQFVDGVMVGREAYQNPSLLGYVD 246
>gi|238752153|ref|ZP_04613635.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
gi|238709626|gb|EEQ01862.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
Length = 348
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 130/240 (54%), Positives = 177/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 23 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKGDYLAYSEQDHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 83 LQLGGSDPQALAHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEASLVADCIKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD+V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 143 RDAVTIPVTVKTRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 VPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVD 262
>gi|298369820|ref|ZP_06981136.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281280|gb|EFI22769.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
Length = 345
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 180/243 (74%), Gaps = 2/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++ +APM++ TDRH R RQIT +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 20 RRVCVAPMLDWTDRHFRYMARQITENAWLYSEMINAGAIIYGDKDRFLMFNEGEQPVALQ 79
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP LAK+AK +++GY+EINLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 80 LGGSEPADLAKAAKAAEEYGYNEINLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 139
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V+I +TVKHRIG+D Y +FVGT+ CRTFIVHARNA+L L+PK+NR++P
Sbjct: 140 AVDIPVTVKHRIGVDRQTEYGVAAEFVGTLYEKTACRTFIVHARNAWLDGLSPKENREVP 199
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK+DFPELEIIINGGI T ++I HL ++DGVM+GREAY NP +M ++D
Sbjct: 200 PLKYDYVYRLKQDFPELEIIINGGITTNEQISEHLKHVDGVMVGREAYHNPMIMRDWDRL 259
Query: 249 YYS 251
+Y
Sbjct: 260 FYG 262
>gi|325267704|ref|ZP_08134355.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
gi|324980828|gb|EGC16489.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
Length = 383
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/260 (52%), Positives = 184/260 (70%), Gaps = 5/260 (1%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
K +S+APM++ TDRH R RQITR++WLYTEM AI+ G+ L N E+P+A
Sbjct: 55 KHTLSVAPMLDWTDRHYRYMARQITRHTWLYTEMVNAGAIVFGDPDRFLARNECENPVAL 114
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G +EP LA++A+ ++GYDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+
Sbjct: 115 QLGGSEPNLLAQAARKAAEYGYDEINLNCGCPSPRVQKGAFGACLMLDAPLVADCLNAMQ 174
Query: 129 DSV-EIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRK 186
D+ + +TVKHRIGID Y + DFVG V CRTF+VHARNA+L L+PK+NR+
Sbjct: 175 DAAPDTAVTVKHRIGIDRQTEYAPLADFVGHLVRHTPCRTFVVHARNAWLDGLSPKENRE 234
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L+Y VY LK++FP+LEIIINGGI+T ++I LHL ++DGVM+GREAY NPF+M ++D
Sbjct: 235 VPPLRYELVYRLKQEFPDLEIIINGGIRTNEDIALHLQHVDGVMVGREAYHNPFVMHDWD 294
Query: 247 LNYYSNLPQYKIPTRIDIIN 266
+Y + P R +I+
Sbjct: 295 RLFYRE--KQPAPERDEIVQ 312
>gi|227357643|ref|ZP_03841996.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
gi|227162353|gb|EEI47357.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
Length = 344
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/249 (55%), Positives = 183/249 (73%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+
Sbjct: 23 YPLNRFSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPIS 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM
Sbjct: 83 LQLGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRK 186
RD V+I +TVK RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D
Sbjct: 203 VPPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVD 262
Query: 247 LNYYSN-LP 254
+ N LP
Sbjct: 263 HVLFDNQLP 271
>gi|168466925|ref|ZP_02700773.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418762767|ref|ZP_13318893.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767734|ref|ZP_13323798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771003|ref|ZP_13327020.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777295|ref|ZP_13333226.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782425|ref|ZP_13338289.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785444|ref|ZP_13341277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804306|ref|ZP_13359913.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419786385|ref|ZP_14312113.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795235|ref|ZP_14320838.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630652|gb|EDX49264.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392613183|gb|EIW95644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621731|gb|EIX04080.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392735026|gb|EIZ92207.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392735384|gb|EIZ92557.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392735496|gb|EIZ92668.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744112|gb|EJA01169.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392744288|gb|EJA01344.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392752541|gb|EJA09482.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392770825|gb|EJA27547.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 332
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQMLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|425069696|ref|ZP_18472811.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
gi|404596272|gb|EKA96793.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
Length = 344
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 183/248 (73%), Gaps = 2/248 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N + S+APM++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+
Sbjct: 24 NLNRFSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPISL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMR
Sbjct: 84 QLGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMR 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKI 187
D V+I +TVK RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR++
Sbjct: 144 DVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREV 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D
Sbjct: 204 PPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVDH 263
Query: 248 NYYSN-LP 254
+ N LP
Sbjct: 264 VLFDNQLP 271
>gi|422654763|ref|ZP_16717494.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330967777|gb|EGH68037.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 336
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 175/245 (71%), Gaps = 1/245 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A
Sbjct: 17 SRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLAL 76
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 77 QLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMR 136
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 137 DAVGIPVTVKHRIGINGRDSYAELCDFVGTVHEAGCQSFTVHARIAILEGLSPKENRDIP 196
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 197 PLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQ 256
Query: 249 YYSNL 253
+ ++
Sbjct: 257 LFGSV 261
>gi|225075955|ref|ZP_03719154.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
gi|224952670|gb|EEG33879.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
Length = 319
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 174/237 (73%), Gaps = 2/237 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M++ TDRH R RQITR +WLY+EM + A++ G+K L FN E P+A Q+G ++P
Sbjct: 1 MLDWTDRHYRFMARQITRNTWLYSEMVNSGAVVYGDKDRFLSFNEGEQPVALQLGGSDPH 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA +AK + +GY+E+NLNCGCPS RVQ G FGA LM LV+DC+ AM+D+VEI +T
Sbjct: 61 DLAIAAKAAETYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVADCLNAMQDAVEIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 195
VKHRIG+D Y V DFVG + CRT+IVHARNA+L L+PK+NR++P LKY +V
Sbjct: 121 VKHRIGVDRQTEYQVVADFVGMLREKTACRTYIVHARNAWLDGLSPKENREVPPLKYEYV 180
Query: 196 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
Y LK++FP+LEI+INGGI T +EI HL ++DGVM+GREAY NP LM ++D +Y++
Sbjct: 181 YRLKQEFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPMLMRDWDARFYND 237
>gi|145642466|ref|ZP_01798016.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|145272834|gb|EDK12730.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 22.4-21]
Length = 327
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRCRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|145639381|ref|ZP_01794986.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
gi|145271428|gb|EDK11340.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
Length = 327
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 177/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRCRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKHDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|423728349|ref|ZP_17702088.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
gi|424150269|ref|ZP_17881622.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390696874|gb|EIN71315.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390736081|gb|EIO07432.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
Length = 345
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKHDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|119469148|ref|ZP_01612132.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
gi|119447400|gb|EAW28668.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
Length = 329
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 182/255 (71%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+
Sbjct: 13 RRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQL 72
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P+ LAK AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM++
Sbjct: 73 GGSDPEALAKCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKNE 132
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L
Sbjct: 133 VSIPVTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPL 192
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y
Sbjct: 193 DYPRVYQLKKDYPQLDLSINGGVKTVEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIY 252
Query: 251 SNLPQYKIPTRIDII 265
+ + TR D++
Sbjct: 253 GDTANTQ--TRHDVV 265
>gi|422591186|ref|ZP_16665833.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878546|gb|EGH12695.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 339
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/244 (53%), Positives = 175/244 (71%), Gaps = 1/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGTVHEAGCQSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQL 260
Query: 250 YSNL 253
+ ++
Sbjct: 261 FGSV 264
>gi|205355015|ref|YP_002228816.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375125917|ref|ZP_09771081.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445131990|ref|ZP_21381991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|205274796|emb|CAR39855.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326630167|gb|EGE36510.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444849429|gb|ELX74540.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 332
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DG M+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGAMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|311281407|ref|YP_003943638.1| yjbN family TIM-barrel protein [Enterobacter cloacae SCF1]
gi|308750602|gb|ADO50354.1| TIM-barrel protein, yjbN family [Enterobacter cloacae SCF1]
Length = 332
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/240 (54%), Positives = 173/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 10 FPAHRFSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 69
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 70 LQLGGSDPAALAQCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 129
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD+ I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 130 RDAASIPVTVKTRIGIDDQDSYEFLCEFINTVSGRGECEMFIIHARKAWLSGLSPKENRE 189
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ E HL ++DGVM+GRE Y+NP +++ D
Sbjct: 190 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLAEAKAHLQHMDGVMVGREVYQNPGILATVD 249
>gi|429335178|ref|ZP_19215817.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
gi|428760137|gb|EKX82412.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
Length = 336
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDR CR F R ++R++ LYTEM TT A+L G+ L +A E+P+A Q
Sbjct: 18 RRFSVAPMMDWTDRRCRFFLRLLSRHALLYTEMVTTGALLHGDSARFLGHDAAEYPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA AK+ + GY+E+NLN GCPS+RVQN GA LM P LV+DC+KAM D
Sbjct: 78 LGGSVPADLAACAKLAEVAGYNEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMID 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V+I +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVQIPVTVKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LKKDFP+LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDIAAQLKKDFPDLEIILNGGIKTLEECHEHLKTFDGVMLGREAYHNPYLLAQVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|387614780|ref|YP_006117896.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
gi|309704516|emb|CBJ03865.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
Length = 345
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|145638041|ref|ZP_01793669.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
gi|145268759|gb|EDK08734.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
Length = 327
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRCRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|424066941|ref|ZP_17804402.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408001869|gb|EKG42148.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 339
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 177/244 (72%), Gaps = 1/244 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A
Sbjct: 20 SRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLAL 79
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 80 QLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMR 139
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIP 199
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 200 PLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQ 259
Query: 249 YYSN 252
+ +
Sbjct: 260 LFGS 263
>gi|424143901|ref|ZP_17875730.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
gi|390695683|gb|EIN70198.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
Length = 339
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKHDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|240950331|ref|ZP_04754601.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
gi|240295142|gb|EER45961.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
Length = 329
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE 62
M N Y+ R S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++
Sbjct: 1 MQNQFYSGR-FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPA 59
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
E+P+A Q+G ++P +LA AK++Q+ GY E+NLN GCPS+RVQNG FGA LM K LV+D
Sbjct: 60 ENPVALQLGGSDPTQLAHCAKLVQERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVAD 119
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
CIKAM+D+VEI +TVKHRIGID+++SY F+ DF+ + FIVHAR A+L L+PK
Sbjct: 120 CIKAMQDAVEIPVTVKHRIGIDELDSYAFLCDFIEKIQPYS-NDFIVHARKAWLSGLSPK 178
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 179 ENREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLL 238
Query: 243 SNFD 246
D
Sbjct: 239 GEID 242
>gi|424071655|ref|ZP_17809078.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407998743|gb|EKG39144.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 339
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|345872216|ref|ZP_08824154.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
gi|343919297|gb|EGV30047.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
Length = 330
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 183/256 (71%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
K+S+APM++ TDRHCR F R I+R++ LY+EM TT A++ G+ + L F+A EHP+A Q+
Sbjct: 2 KLSVAPMLDWTDRHCRYFLRLISRHTLLYSEMVTTGALIHGDCERHLRFDAAEHPLALQL 61
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +A+ A+I WGYDE+N+N GCPS+RVQNG FGA LM +P LV++C+KAM+D
Sbjct: 62 GGSDPADMARCARIGADWGYDEVNINVGCPSDRVQNGRFGACLMAEPGLVAECVKAMKDV 121
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGIDD +SY+ + DFVG + AGC IVHAR A+L L+P++NR IP L
Sbjct: 122 VSIPVTVKTRIGIDDRDSYEELVDFVGAQAEAGCDAIIVHARKAWLSGLSPRENRDIPPL 181
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK+DFP+L + +NGGIKT E L +DGVM+GREAY+NP++++ D +
Sbjct: 182 RYDVALRLKRDFPDLPMAVNGGIKTLDEAAEFLTQLDGVMIGREAYQNPWILAEADRRIF 241
Query: 251 SNLPQYKIPTRIDIIN 266
+ P R +++
Sbjct: 242 GD--DRAPPDRFQVLD 255
>gi|315497697|ref|YP_004086501.1| tim-barrel protein, yjbn family [Asticcacaulis excentricus CB 48]
gi|315415709|gb|ADU12350.1| TIM-barrel protein, yjbN family [Asticcacaulis excentricus CB 48]
Length = 343
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 1/240 (0%)
Query: 14 SIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGD 72
S+APMM+ TDRHCR FHR +T+ + LYTEM T++AI+ G+++ L F+ EHP+A Q+G
Sbjct: 10 SVAPMMDWTDRHCRAFHRTLTKGALLYTEMVTSRAIINGDRQKLLGFSEVEHPVALQLGG 69
Query: 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 132
+EP +LA AKI + WGYDE+NLNCGCPS+RVQ+G FGA LM +P LV+DC++AM ++
Sbjct: 70 SEPDELAACAKIAEDWGYDEVNLNCGCPSDRVQSGSFGACLMREPQLVADCMQAMGEATR 129
Query: 133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 192
+ +TVK RIG+DD + + V AG RTFIVHAR A+LK L+PK+NR IP L Y
Sbjct: 130 LPVTVKCRIGVDDQDEETALFALVEACRQAGVRTFIVHARKAWLKGLSPKENRDIPPLNY 189
Query: 193 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
VY LK+ P+L I INGGI T +E + HL ++DGVMLGR AY P L+ D +S
Sbjct: 190 ELVYALKRAHPDLTISINGGIGTLQEAETHLKHVDGVMLGRAAYHEPALLGQVDRRIFSG 249
>gi|456063049|ref|YP_007502019.1| Putative oxygen-independent coproporphyrinogen III oxidase [beta
proteobacterium CB]
gi|455440346|gb|AGG33284.1| Putative oxygen-independent coproporphyrinogen III oxidase [beta
proteobacterium CB]
Length = 406
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 212/353 (60%), Gaps = 36/353 (10%)
Query: 637 VKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 696
VK DE +Y++AL+ D+E LP + R++H+IFIGGGTPSL+S G++ LL I+
Sbjct: 55 VKPSQGFDEVRYIKALIADLETELPRVWGRQVHSIFIGGGTPSLLSANGMNELLSAIRAR 114
Query: 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY 756
+ + + IT+EANP + E EKF ++ GINR+S+GIQSF ++ L LGR H+ +AK
Sbjct: 115 VNLEPDCEITMEANPGSVETEKFAGFANAGINRVSLGIQSFQDQQLKALGRIHNGAEAKR 174
Query: 757 AIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816
AI IA ++F + NLDL++ LPNQTL D+ A+ + PHLS Y+LT+EPNTYF +P
Sbjct: 175 AITIALEHFKSVNLDLMFGLPNQTLEAAKADIETALSFKTPHLSFYNLTLEPNTYFANFP 234
Query: 817 PLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------ 870
P +PS DE + ++ +LL+ Y+ YEISAY+K E +HNLNYW+FGDY+
Sbjct: 235 P-KLPSEDEIDAIFEQNLALLEAAGYRRYEISAYAKKDQECKHNLNYWRFGDYIGIGAGA 293
Query: 871 -----------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFS 901
GN++ ++++I K L FEFMLN LRL DG
Sbjct: 294 HGKISFPDKITRQVRERHPETYMQAMESKGNALIEAREIPAKDLPFEFMLNTLRLTDGVD 353
Query: 902 PNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+ + ++ L A K GLL + +K T G +LN+LQ++FL
Sbjct: 354 TVTFGERTGLPLNVVSKGLNEASKKGLLDSDPNRLKATEQGLRYLNNLQELFL 406
>gi|392377515|ref|YP_004984674.1| tRNA-dihydrouridine synthase A [Azospirillum brasilense Sp245]
gi|356878996|emb|CCC99890.1| tRNA-dihydrouridine synthase A [Azospirillum brasilense Sp245]
Length = 329
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/265 (48%), Positives = 187/265 (70%), Gaps = 1/265 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRHCR FHR +++ + LYTEM TT A+L G+++ L ++A EHP+A Q+G
Sbjct: 6 LSVAPMMDWTDRHCRTFHRLLSKNTLLYTEMVTTGAVLHGDRERLLGYDAAEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA A+I ++WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V
Sbjct: 66 GSDPAELAACARIAEEWGYDEVNLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I ITVK RI ID++ + + FV TVS+AGC FIVHAR A+LK L+PK+NR IP L+
Sbjct: 126 SIPITVKSRIAIDEMEEWPTLDQFVRTVSAAGCTHFIVHARKAWLKGLSPKENRDIPPLR 185
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK++ P+L I INGGI+T E + HL +D VM+GR AY+ P+++++ D +
Sbjct: 186 YDLVHRLKQENPQLTIAINGGIRTLDEAEGHLATLDSVMIGRAAYETPYILADADRRLFG 245
Query: 252 NLPQYKIPTRIDIINLDSENRENEG 276
P ++ + +E R +G
Sbjct: 246 GEPGPDRYAVVEAMAAYAEERMRQG 270
>gi|407783743|ref|ZP_11130938.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
gi|407200178|gb|EKE70189.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
Length = 333
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 185/256 (72%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRH R F R I+R + LYTEM TT A+L G+++ L F+A EHP+A Q+
Sbjct: 8 RLSVAPMMDWTDRHDRFFLRLISRQALLYTEMVTTGAVLHGDRQRLLRFDAAEHPVACQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A++++ +GYDE+NLNCGCPS+RVQ G FGA LM +P V+ +KAM +
Sbjct: 68 GGSEPDDLARAAEVVEGFGYDEVNLNCGCPSDRVQKGRFGACLMAEPETVAAGVKAMIAA 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVK RIG+D++ Y ++ F+ TV+ AGCR+FIVHAR A+LK L+PK+NR+IP L
Sbjct: 128 TSLPVTVKSRIGVDEMEDYADLKRFIETVADAGCRSFIVHARKAWLKGLSPKENREIPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y VY LK++ PEL I++NGG+ T + HL ++DGVM+GR AY+ P+++++ D ++
Sbjct: 188 RYELVYRLKQELPELTIVLNGGVATLDQAAAHLAHVDGVMIGRAAYQEPYMLADADRRFF 247
Query: 251 SNLPQYKIPTRIDIIN 266
P+R ++
Sbjct: 248 GA--SAPAPSRRQVLE 261
>gi|238798490|ref|ZP_04641969.1| tRNA-dihydrouridine synthase A [Yersinia mollaretii ATCC 43969]
gi|238717652|gb|EEQ09489.1| tRNA-dihydrouridine synthase A [Yersinia mollaretii ATCC 43969]
Length = 343
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/249 (53%), Positives = 180/249 (72%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 17 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGDYLAYSEQDHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 77 LQLGGSDPQALAQCAKQAEFRGYNEINLNVGCPSDRVQNGRFGACLMAEANLVADCIKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 197 VPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVD 256
Query: 247 LNYY-SNLP 254
+ SN P
Sbjct: 257 RELFDSNAP 265
>gi|396384|gb|AAC43143.1| ORF_o345 [Escherichia coli str. K-12 substr. MG1655]
Length = 345
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM V+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAXXVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|292490501|ref|YP_003525940.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
gi|291579096|gb|ADE13553.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
Length = 340
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 189/266 (71%), Gaps = 3/266 (1%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFN 60
N Y R++SIAPMM TDRHCR F R I+ ++ LYTEM TT A++ G+++ L ++
Sbjct: 11 NTFAPAYLSRRVSIAPMMEWTDRHCRYFLRLISHHALLYTEMVTTGALIHGDRERFLAYH 70
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
EHP+A Q+G + P++LA A++ + G+DE+NLN GCPS+RVQ+G FGA LM +P LV
Sbjct: 71 PTEHPLAVQLGGSNPEELAFCARLAEDHGFDEVNLNVGCPSDRVQSGRFGACLMMEPELV 130
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++C+ AM +V++ +TVK RIG+D+ +SY+ + F+ TVS AGCRTFI+HAR A+L+ L+
Sbjct: 131 AECVAAMAQTVQLPVTVKTRIGVDEQDSYEALTRFINTVSQAGCRTFILHARKAWLQGLS 190
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+ P L+Y V +K+DFP LE++INGGI T +E L +DG+M+GR AY NP+
Sbjct: 191 PKENREKPPLRYEVVRAIKQDFPHLEVVINGGIATLEEAQEQLTLLDGIMIGRAAYHNPY 250
Query: 241 LMSNFDLNYYSNLPQYKIPTRIDIIN 266
L++ D +Y + + +PTR I+
Sbjct: 251 LLAQVDRYFYGDF--HPLPTRHGIME 274
>gi|304313001|ref|YP_003812599.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
gi|301798734|emb|CBL46967.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
Length = 357
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 176/237 (74%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQI++ + LYTEM TT A+L N LD++ +EHP+A Q
Sbjct: 40 RRLSVAPMLDWTDRHARYMLRQISQRTLLYTEMVTTGALLHTNPARWLDYHHDEHPLALQ 99
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G N+P LA+ K+ +W YDE+NLN GCPS+RVQ G FGA LM P +V+DC+KAM+D
Sbjct: 100 LGGNQPHALAQCVKLAAQWQYDEVNLNVGCPSDRVQEGAFGACLMATPNIVADCVKAMQD 159
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+ + ITVK RIGIDD + ++DF+ TV +AGC+TFIVHAR A+LK L+PK+NR+IP
Sbjct: 160 ASNLPITVKCRIGIDDQDEEQGLQDFIETVQAAGCKTFIVHARKAWLKGLSPKENREIPP 219
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L Y V+ LKKDFP+LE+IINGG KT E L ++DGVM+GREAY NP ++++ D
Sbjct: 220 LNYPRVHRLKKDFPDLELIINGGFKTLDECAEQLAHLDGVMIGREAYHNPMVLADAD 276
>gi|170718234|ref|YP_001785255.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 2336]
gi|168826363|gb|ACA31734.1| TIM-barrel protein, yjbN family [Haemophilus somnus 2336]
Length = 328
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/246 (53%), Positives = 177/246 (71%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
M + + + S+APM++ T RHCR FHRQ +RY+ LYTEM TT AI+ K L ++
Sbjct: 1 MKQNQPHFYRGRFSVAPMLDWTTRHCRFFHRQFSRYTLLYTEMVTTGAIIHAKYDHLAYD 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
E+P+A Q+G ++P+KL AK ++ GY EINLN GCPS+RVQNG FGA LM + LV
Sbjct: 61 VSENPVALQLGGSDPEKLQYCAKKGEERGYQEINLNVGCPSDRVQNGMFGACLMARAALV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++C+ AM+ +V I +TVK R+GID+ +SY+F+ DF+ V + GC+ FI+HAR A+L L+
Sbjct: 121 AECVNAMQSAVNIPVTVKTRLGIDEFDSYEFLCDFIEKVHNIGCQEFIIHARKAWLSGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L Y VY LKKDFP L I INGGIKT +EI HLNY+DGVM+GREAY+NP
Sbjct: 181 PKENREIPPLNYERVYQLKKDFPHLLISINGGIKTLEEIQQHLNYVDGVMVGREAYQNPS 240
Query: 241 LMSNFD 246
L+ D
Sbjct: 241 LLGYID 246
>gi|385342626|ref|YP_005896497.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240149]
gi|385857936|ref|YP_005904448.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NZ-05/33]
gi|421549904|ref|ZP_15995912.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|433470627|ref|ZP_20428026.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 68094]
gi|433476923|ref|ZP_20434250.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70012]
gi|433521136|ref|ZP_20477836.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 61103]
gi|433525327|ref|ZP_20481971.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 69096]
gi|433538106|ref|ZP_20494592.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70030]
gi|254671973|emb|CBA04409.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha275]
gi|325202832|gb|ADY98286.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240149]
gi|325208825|gb|ADZ04277.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NZ-05/33]
gi|402331322|gb|EJU66661.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|432211675|gb|ELK67623.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 68094]
gi|432217110|gb|ELK72980.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70012]
gi|432262174|gb|ELL17418.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 61103]
gi|432263113|gb|ELL18338.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 69096]
gi|432275782|gb|ELL30849.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70030]
Length = 336
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 181/244 (74%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V+I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T +EI HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEEIAQHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|398921337|ref|ZP_10659783.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM49]
gi|398166020|gb|EJM54127.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM49]
Length = 331
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 172/243 (70%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFV TV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEELCDFVDTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|289627280|ref|ZP_06460234.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289650430|ref|ZP_06481773.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584664|ref|ZP_16659768.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330869475|gb|EGH04184.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 339
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELSDFVGKVHEAGCESFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FDS 263
>gi|410090253|ref|ZP_11286850.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
gi|409762459|gb|EKN47478.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
Length = 339
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R +++++ LYTEM TT A+L G+ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRFFLRLLSKHALLYTEMVTTGALLHGDSARFLQHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACARMAEGVGYDEVNLNVGCPSDRVQNNMIGACLMGHPELVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVG V AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVSIPVTVKHRIGINGRDSYEQLCDFVGKVHEAGCQSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LKKDFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDVVAQLKKDFPQLEIVLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|197286568|ref|YP_002152440.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
gi|194684055|emb|CAR45390.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
Length = 344
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/249 (55%), Positives = 183/249 (73%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+
Sbjct: 23 YPLNRFSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPIS 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM
Sbjct: 83 LQLGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRK 186
RD V+I +TVK RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D
Sbjct: 203 VPPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVD 262
Query: 247 LNYYSN-LP 254
+ N LP
Sbjct: 263 HVLFDNQLP 271
>gi|380510524|ref|ZP_09853931.1| tRNA-dihydrouridine synthase A [Xanthomonas sacchari NCPPB 4393]
Length = 339
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR+FHR + + LYTEM A+ LG++ LDF+A EHP+A Q+
Sbjct: 19 RLSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLDFDAAEHPLALQL 78
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV++C+ AM ++
Sbjct: 79 GGSEPALLAQAARIGQDWGYDEINLNCGCPSDRVQAGRFGACLMREPALVAECVAAMVEA 138
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK R+G+D + Y FV V++AGC F+VHARNA+L+ L+PK+NR++P L
Sbjct: 139 VDIPVTVKCRLGVDQDDDYAVFLAFVDQVAAAGCELFVVHARNAWLQGLSPKENREVPPL 198
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+Y++ + LK++ P+L++++NGG+ + L +DGVMLGR AY +P+++ D
Sbjct: 199 RYDWAHRLKRERPQLQVVLNGGLAAVETAQAQLQAVDGVMLGRAAYHDPYVLHRLD 254
>gi|398989813|ref|ZP_10693040.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM24]
gi|399014554|ref|ZP_10716843.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM16]
gi|398110575|gb|EJM00474.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM16]
gi|398146480|gb|EJM35223.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM24]
Length = 328
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 172/243 (70%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q
Sbjct: 10 RRFSVAPMMDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQ 69
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D
Sbjct: 70 LGGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMQD 129
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 130 AVSIPVTVKHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 189
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 190 LRYDVAAQLKADFPELEIVLNGGIKTMEACLEHLQTFDGVMLGREAYHNPYLLAEVDQQL 249
Query: 250 YSN 252
+ +
Sbjct: 250 FGS 252
>gi|423696320|ref|ZP_17670810.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q8r1-96]
gi|388003236|gb|EIK64563.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q8r1-96]
Length = 336
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDAHCRFFLRILSKHALLYTEMVTTGALLNGDHERFLRHHESEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + +FVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAARLKADFPELEIVLNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|359439600|ref|ZP_09229545.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|359445015|ref|ZP_09234774.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
gi|358025710|dbj|GAA65794.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|358041144|dbj|GAA71023.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
Length = 324
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 183/255 (71%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+
Sbjct: 8 RRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 68 GGSDPQALAQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPNLVAECVAAMKSE 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L
Sbjct: 128 VNIPVTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLKGLSPKENREVPEL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y
Sbjct: 188 NYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIY 247
Query: 251 SNLPQYKIPTRIDII 265
+ + +R D++
Sbjct: 248 GDAANTQ--SRHDVV 260
>gi|115372138|ref|ZP_01459449.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
gi|115370840|gb|EAU69764.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 330
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/234 (53%), Positives = 169/234 (72%), Gaps = 1/234 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR FHRQ++R++ LYTEM TT A+L G++ L F EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRFFHRQLSRHTLLYTEMLTTGAVLHGDRDRLLGFEPAEHPVALQLGGSEPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA++A+I + WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 61 LAEAARIGEAWGYDEINLNVGCPSDRVQSGRFGACLMAEPELVARLVAAMREAVRIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
K RI IDD+ + + FV +S+ GC FIVHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 121 KSRIAIDDMEEWPTLERFVRLISAEGCSRFIVHARKAWLQGLSPKENRDIPPLRYELVYR 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
LK +FP L+I INGGIKT + HL ++DGVM+GR AY+NP+L++ D +
Sbjct: 181 LKAEFPSLDISINGGIKTLEAAAEHLRHVDGVMIGRAAYENPYLLAEADSRLFG 234
>gi|359450016|ref|ZP_09239485.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
gi|358044183|dbj|GAA75734.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
Length = 324
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 182/255 (71%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+
Sbjct: 8 RRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P+ LAK AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM++
Sbjct: 68 GGSDPEALAKCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKNE 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L
Sbjct: 128 VSIPVTVKTRIGIDEQDSYEFLCALIEASYKVGCDDFIIHARKAWLNGLSPKENREVPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y
Sbjct: 188 DYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIY 247
Query: 251 SNLPQYKIPTRIDII 265
+ + TR D++
Sbjct: 248 GDTANTQ--TRHDVV 260
>gi|339493648|ref|YP_004713941.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338801020|gb|AEJ04852.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 322
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 181/246 (73%), Gaps = 2/246 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q
Sbjct: 4 RRFSVAPMMDWTDRHCRFFLRQLSKHALLYTEMVTTGALLHGDTARFLRYDESEHPLALQ 63
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 64 LGGSVPGDLAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 123
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +++TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P
Sbjct: 124 AVGVEVTVKHRIGINGRDSYSQLCDFVGQVREAGCRSFTVHARIAILEGLSPKQNREVPP 183
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEII+NGGIKT +E +L DGVMLGREAY NP+L++ D +
Sbjct: 184 LRYDVAAQLKRDFPDLEIILNGGIKTLEECREYLLTFDGVMLGREAYHNPYLLAQVDSSL 243
Query: 250 Y-SNLP 254
+ SN P
Sbjct: 244 FGSNAP 249
>gi|417844182|ref|ZP_12490243.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
gi|341947567|gb|EGT74214.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
Length = 329
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T +I+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPSIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPYLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|392555864|ref|ZP_10303001.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas undina NCIMB
2128]
Length = 324
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 183/255 (71%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+
Sbjct: 8 RRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P+ LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 68 GGSDPQALAQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPNLVAECVAAMKSE 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L
Sbjct: 128 VNIPVTVKTRIGIDEEDSYEFLCALIEASHKVGCDDFIIHARKAWLKGLSPKENREVPEL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y
Sbjct: 188 NYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIY 247
Query: 251 SNLPQYKIPTRIDII 265
+ + +R D++
Sbjct: 248 GDAANTQ--SRHDVV 260
>gi|408483012|ref|ZP_11189231.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. R81]
Length = 336
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ L N E
Sbjct: 12 SSPALSRRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAE 71
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV++C
Sbjct: 72 HPLALQLGGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVAEC 131
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+
Sbjct: 132 VKAMRDAVSIPVTVKHRIGINGRDSYAQLCDFVGTVKDAGCTSFTVHARIAILEGLSPKE 191
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR IP L+Y+ LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++
Sbjct: 192 NRDIPPLRYDVAAQLKRDFPELEIVLNGGIKTLEQCHEHLQVFDGVMLGREAYHNPYLLA 251
Query: 244 NFDLNYYSN 252
D + +
Sbjct: 252 EVDQQLFGS 260
>gi|421562563|ref|ZP_16008389.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2795]
gi|421907463|ref|ZP_16337339.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha704]
gi|393291421|emb|CCI73331.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha704]
gi|402342707|gb|EJU77865.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2795]
Length = 336
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 180/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGELPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|386616879|ref|YP_006136545.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
gi|332346048|gb|AEE59382.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
Length = 339
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|193067849|ref|ZP_03048815.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
gi|192958824|gb|EDV89261.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
Length = 339
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+ Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVVLQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|312114498|ref|YP_004012094.1| yjbN family TIM-barrel protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219627|gb|ADP70995.1| TIM-barrel protein, yjbN family [Rhodomicrobium vannielii ATCC
17100]
Length = 343
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 181/251 (72%), Gaps = 3/251 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S+ + +APMM+ TDRHCR FHRQ++R + LYTEM T+ AI+ G+++ L F+A E
Sbjct: 9 SSEGADWRFCVAPMMDWTDRHCRFFHRQLSRRARLYTEMVTSGAIMFGDRERLLGFDASE 68
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P +LA++A+I +GYDEINLNCGCPS+RVQ+G FGA LM +P LV+ C
Sbjct: 69 HPVALQLGGSDPVELARAAEIGAGFGYDEINLNCGCPSDRVQSGRFGACLMAEPELVASC 128
Query: 124 IKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
+ A++ +V +I +TVK+RIGID+ +S + F+ TV+++GC FIVHAR A+LK L+P
Sbjct: 129 VAAIKSAVGGQIPVTVKNRIGIDEQDSEADLTRFIETVAASGCEIFIVHARKAWLKGLSP 188
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
++NR +P L Y VY LK FPEL IIINGGI+T + HL +DGVMLGR AYKNP L
Sbjct: 189 RENRDVPPLDYERVYRLKAAFPELTIIINGGIETIAQSAKHLEMVDGVMLGRAAYKNPAL 248
Query: 242 MSNFDLNYYSN 252
+ D Y
Sbjct: 249 LLEVDAALYGE 259
>gi|300023380|ref|YP_003755991.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
gi|299525201|gb|ADJ23670.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
Length = 335
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 176/236 (74%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ SIAPMM+ TDRHCR+FHRQ+T + LYTEM T A++ G++ L ++ EHPIA Q+
Sbjct: 7 RFSIAPMMDWTDRHCRVFHRQLTTRALLYTEMVTADAVIHGDRARLLGYSEVEHPIALQL 66
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P KLA++A+I + GYDEINLN GCPS+RVQ G FGA LM++P LV+ C+ AMR
Sbjct: 67 GGSDPAKLAEAARIGAELGYDEINLNVGCPSDRVQEGRFGACLMSEPELVAACVAAMRAH 126
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVK RIGIDD ++ + +R F+ V+ AGC F+VHAR A+LK L+PK+NR++P L
Sbjct: 127 QPVPVTVKCRIGIDDQDAEEDLRRFIDVVADAGCTRFVVHARKAWLKGLSPKENREVPPL 186
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK P+LEI+INGGI+T +E HL+++DGVMLGR AY+NP ++++ D
Sbjct: 187 DYERVYRLKAARPDLEIVINGGIETIEEARAHLDHVDGVMLGRAAYQNPAILADVD 242
>gi|422016920|ref|ZP_16363496.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
gi|414091350|gb|EKT53036.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
Length = 342
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/240 (55%), Positives = 176/240 (73%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+N + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L F+ EE P+A
Sbjct: 20 HNLNRFSVAPMLDWTDRHCRYFHRVLSKNTLLYTEMVTTGAIIYGKGDYLAFSEEEQPVA 79
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GY+EINLN GCPS+RVQNG FGA LM LV+DCIKAM
Sbjct: 80 LQLGGSDPAALAQCAKLAEARGYNEINLNVGCPSDRVQNGRFGACLMGDAQLVADCIKAM 139
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRK 186
+D V I +TVK RIGID+ +SY+F+ DF+ VS+ GC FI+HAR A+L L+PK+NR+
Sbjct: 140 QDVVSIPVTVKTRIGIDEQDSYEFLCDFIDKVSTQGGCEMFIIHARKAWLSGLSPKENRE 199
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DFP L + INGG+KT +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 200 IPPLDYPRVYQLKRDFPHLTMAINGGVKTLEEAKEHLRYLDGVMVGREAYQNPSILAEVD 259
>gi|398993654|ref|ZP_10696596.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM21]
gi|398134411|gb|EJM23574.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM21]
Length = 331
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 172/243 (70%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD+HCR F R +++ + LYTEM TT A+L G+ L N EHP+A Q
Sbjct: 13 RRFSVAPMMDWTDKHCRFFLRLLSKNALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQ 72
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 73 LGGSVPLDLAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRD 132
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 133 AVSIPVTVKHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPP 192
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK DFP+LEII+NGGIKT + HL DGVMLGREAY NP++M+ D
Sbjct: 193 LRYDVAARLKTDFPDLEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQL 252
Query: 250 YSN 252
+ +
Sbjct: 253 FGS 255
>gi|411012138|ref|ZP_11388467.1| tRNA-dihydrouridine synthase A [Aeromonas aquariorum AAK1]
Length = 318
Score = 286 bits (732), Expect = 4e-74, Method: Composition-based stats.
Identities = 143/317 (45%), Positives = 205/317 (64%), Gaps = 24/317 (7%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P
Sbjct: 1 MLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPTD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TV
Sbjct: 61 LARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDLVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
K RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYR 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 257
+K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D +
Sbjct: 181 VKQDYPDLTIAINGGVTSLEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVFGQ--NNA 238
Query: 258 IPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMT---------LTEK 308
+P+R +++ + E E N ++ M+++ GL L+E
Sbjct: 239 VPSRHEVVRMMLPYIEQE--------LAKGNYLSHMTRHMLGLFQNMQGARAWRRHLSEN 290
Query: 309 HC-----IQLKLDMMTK 320
C IQ+ LD M K
Sbjct: 291 ACKPGADIQVVLDAMAK 307
>gi|419177772|ref|ZP_13721572.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
gi|378027302|gb|EHV89932.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
Length = 345
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|422832678|ref|ZP_16880747.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|432414540|ref|ZP_19657183.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|432634945|ref|ZP_19870839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
gi|371614827|gb|EHO03310.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|430946293|gb|ELC66236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|431175589|gb|ELE75591.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
Length = 345
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|414072094|ref|ZP_11408047.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
gi|410805440|gb|EKS11453.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
Length = 329
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 183/255 (71%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
RK S+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+
Sbjct: 13 RKFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQL 72
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 73 GGSDPKALARCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKSE 132
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L
Sbjct: 133 VTIPVTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPL 192
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y
Sbjct: 193 DYPRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIY 252
Query: 251 SNLPQYKIPTRIDII 265
+ + +R D++
Sbjct: 253 GDTANTQ--SRHDVV 265
>gi|425071149|ref|ZP_18474255.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
gi|404599974|gb|EKB00427.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
Length = 344
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 182/248 (73%), Gaps = 2/248 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAF 68
N S+APM++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+
Sbjct: 24 NLNHFSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPISL 83
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++P+ LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMR
Sbjct: 84 QLGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMR 143
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKI 187
D V+I +TVK RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR++
Sbjct: 144 DVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREV 203
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247
P L Y VY LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D
Sbjct: 204 PPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVDH 263
Query: 248 NYYSN-LP 254
+ N LP
Sbjct: 264 VLFDNQLP 271
>gi|309787535|ref|ZP_07682147.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
gi|308925113|gb|EFP70608.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
Length = 339
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 21 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 80
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 81 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 140
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ F+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 141 SIPVTVKTRIGIDDQDSYEFLCGFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 260
Query: 251 SN 252
+
Sbjct: 261 GS 262
>gi|443644533|ref|ZP_21128383.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|443284550|gb|ELS43555.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 332
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDESEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 74 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 134 AVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 194 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>gi|332284552|ref|YP_004416463.1| tRNA-dihydrouridine synthase A [Pusillimonas sp. T7-7]
gi|330428505|gb|AEC19839.1| tRNA-dihydrouridine synthase A [Pusillimonas sp. T7-7]
Length = 334
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 128/235 (54%), Positives = 170/235 (72%), Gaps = 3/235 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK--KHCLDFNAEEHPIAFQ 69
+ +APM+++TD+HCR FHR + + LYTEM TT A++ K +H LDF+ E P+A Q
Sbjct: 12 RFCVAPMIDVTDKHCRYFHRLLAPQARLYTEMITTGALMHGKVARH-LDFDPAEEPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G +EP+ LA+SAK+ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D
Sbjct: 71 LGGSEPEALAESAKLGQQWGYDEINLNCGCPSERVQRGAFGACLMAEPQLVADCIKAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V + +TVKHR+G+D +SY FVRDFVG + + GCR FIVHARNA LK L+PK NR+IP
Sbjct: 131 AVTVPVTVKHRLGLDYDDSYGFVRDFVGVIHNTGCRVFIVHARNAVLKGLSPKDNREIPP 190
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
L+Y+ LK DFP+ ++NGGI + + DGVMLGR A+ P ++S
Sbjct: 191 LRYDAAARLKADFPDSVFVLNGGIAQASQALELMRQFDGVMLGRAAWHQPGVLSE 245
>gi|326795079|ref|YP_004312899.1| yjbN family TIM-barrel protein [Marinomonas mediterranea MMB-1]
gi|326545843|gb|ADZ91063.1| TIM-barrel protein, yjbN family [Marinomonas mediterranea MMB-1]
Length = 348
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 178/243 (73%), Gaps = 2/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAF 68
R+ S+APM++ T R R+F R +T+++ LYTEM TT AIL N + L ++ EHPIA
Sbjct: 22 RRFSVAPMLDWTTRDYRVFARTLTKHTLLYTEMVTTGAILQGDNPERFLKYDDCEHPIAL 81
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++ LA AKI + + YDE+NLN GCPS+RVQN GA LM P V+D +KAM+
Sbjct: 82 QLGGSDAVALATCAKIAETFHYDEVNLNVGCPSDRVQNSLIGACLMAYPDKVADILKAMQ 141
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+ I +T+KHRIG+DD Y +RDFVGTV+ G +TFIVHARNA L+ L+PK+NR+IP
Sbjct: 142 DATSIPVTIKHRIGLDDQQEYSILRDFVGTVADTGIQTFIVHARNAILQGLSPKENREIP 201
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LKKDFP+LEIIINGGIKT E HL+++DGVM+GREAY NP+++S+ D
Sbjct: 202 PLKYDYVYQLKKDFPDLEIIINGGIKTIDETISHLDHVDGVMMGREAYNNPWILSDIDTK 261
Query: 249 YYS 251
Y
Sbjct: 262 VYG 264
>gi|422676216|ref|ZP_16735549.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
gi|330973923|gb|EGH73989.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
Length = 339
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 176/244 (72%), Gaps = 1/244 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A
Sbjct: 20 SRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLAL 79
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 80 QLGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMR 139
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIP 199
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFP LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 200 PLRYDVVAQLKSDFPGLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQ 259
Query: 249 YYSN 252
+ +
Sbjct: 260 LFGS 263
>gi|66045176|ref|YP_235017.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B728a]
gi|63255883|gb|AAY36979.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas syringae pv.
syringae B728a]
Length = 339
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCESFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPGLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FGS 263
>gi|444375899|ref|ZP_21175150.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
gi|443679987|gb|ELT86636.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
Length = 346
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 132/240 (55%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR FHR +++ + LYTEM TT AI+ K L FN EEHP+A
Sbjct: 22 YPSARFSVAPMLDWTDRHCRYFHRILSKNALLYTEMVTTGAIIHGKGDFLAFNEEEHPVA 81
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G + P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ AM
Sbjct: 82 LQLGGSNPADLATCAKLAVERGYDEINLNVGCPSDRVQNGRFGACLMGEAELVAQCVSAM 141
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
++ V+I +TVK RIGIDD +SY+F+ DFV TVS G C F +HAR A+L L+PK+NR+
Sbjct: 142 KEVVDIPVTVKTRIGIDDQDSYEFLVDFVRTVSEKGSCDNFTIHARKAWLSGLSPKENRE 201
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LKKDFP L + INGGIK+ +E + HL ++DGVM+GREAY++P++++ D
Sbjct: 202 IPPLDYPRVYQLKKDFPHLTMAINGGIKSLEEAEEHLKHLDGVMIGREAYQSPYMLAEVD 261
>gi|238754677|ref|ZP_04616030.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
gi|238707136|gb|EEP99500.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
Length = 343
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 128/237 (54%), Positives = 176/237 (74%), Gaps = 1/237 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+
Sbjct: 20 QRFSVAPMLDWTDRHCRYFHRLLTKEALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQL 79
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD
Sbjct: 80 GGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCVKAMRDV 139
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V I +TVK RIGIDD +SY+F+ +FV V+ GC F +HAR A+L L+PK+NR++P
Sbjct: 140 VSIPVTVKTRIGIDDQDSYEFLCEFVQKVAEQGGCDMFTIHARKAWLSGLSPKENREVPP 199
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L Y VY LK+DFP L + INGG+KT +E HL Y+DGVM+GREAY+NP +++ D
Sbjct: 200 LDYPRVYQLKRDFPALTMAINGGVKTLEEAKEHLKYLDGVMMGREAYQNPSILTQVD 256
>gi|387773516|ref|ZP_10128874.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
gi|386904865|gb|EIJ69648.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
Length = 321
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 132/235 (56%), Positives = 176/235 (74%), Gaps = 1/235 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K L++N E+P+A Q+G
Sbjct: 9 RFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYNPAENPVALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++PK+LA AK++++ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V
Sbjct: 69 GSDPKQLAHCAKLVEERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+I +TVKHRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PK+NR+IP L
Sbjct: 129 QIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKENREIPPLD 187
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DF L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D
Sbjct: 188 YERVYQLKRDFSHLNISINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLGEID 242
>gi|388469355|ref|ZP_10143564.1| tRNA dihydrouridine synthase A [Pseudomonas synxantha BG33R]
gi|388006052|gb|EIK67318.1| tRNA dihydrouridine synthase A [Pseudomonas synxantha BG33R]
Length = 336
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ + L N EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSQHALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYAELCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFPELEI +NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKRDFPELEINLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|422599027|ref|ZP_16673278.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|330989295|gb|EGH87398.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 339
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELSDFVGKVHEAGCESFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCGEHLQTFDGVMLGREAYHNPYLLAQVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FDS 263
>gi|423096295|ref|ZP_17084091.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q2-87]
gi|397888880|gb|EJL05363.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q2-87]
Length = 336
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDPHCRYFLRILSKHALLYTEMVTTGALLNGDHERFLRHHEAEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACSRMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPDLVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY+ + +FVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVVARLKADFPELEIVLNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|82779541|ref|YP_405890.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae Sd197]
gi|81243689|gb|ABB64399.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 345
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ F+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYEFLCGFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 207 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 266
Query: 251 SN 252
+
Sbjct: 267 GS 268
>gi|348590424|ref|YP_004874886.1| radical SAM protein [Taylorella asinigenitalis MCE3]
gi|347974328|gb|AEP36863.1| Radical SAM family enzyme, similar to coproporphyrinogen III
oxidase, oxygen-independent, clustered with
nucleoside-triphosphatase RdgB [Taylorella
asinigenitalis MCE3]
Length = 400
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 211/355 (59%), Gaps = 43/355 (12%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
I E+ +L AL D+ +LP I R I ++FIGGGTPSL+S +D +L+ ++ LL +
Sbjct: 45 IPEEAFLRALEEDLIYNLPHIWGRSIISVFIGGGTPSLLSVAAIDRILQILRNLLNISSD 104
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
I IT+EANP+TFE EKF SY G+NRLSIG+QSFNN++L LGR HDS A A EIA
Sbjct: 105 IEITMEANPATFESEKFASYRSSGVNRLSIGVQSFNNEHLKALGRIHDSDDAVRAAEIAH 164
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
++F NFNLDL+YALPNQ++ + DL A++ HLS+Y LT+EPNT F K+PP MPS
Sbjct: 165 KHFENFNLDLMYALPNQSVENSISDLQMALKLDSTHLSMYQLTLEPNTVFAKFPPPRMPS 224
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG----------- 871
+D+ M++ + + + +K YE+SAY+K G++ HN NYW+FGDYLG
Sbjct: 225 DDDIINMEEALVDIADAHGFKRYEVSAYAKHGWQCSHNRNYWEFGDYLGIGPGAHSKLSF 284
Query: 872 --------------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDG 899
I +S+ + L FEFMLNALRL++G
Sbjct: 285 HDRIVREVRERHPMRWMEKVLSGEKGEKGEKGAQIIESRSVGVHELPFEFMLNALRLREG 344
Query: 900 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+ F ER G++I ++ L+ A K GL+ ++ T G +LN+LQ+IFL
Sbjct: 345 VPTHYFEERCGVSIAVLLPLLEEAVKKGLMSELPTELRATELGWNYLNNLQEIFL 399
>gi|312959660|ref|ZP_07774177.1| dihydrouridine synthase TIM-barrel protein YjbN [Pseudomonas
fluorescens WH6]
gi|311286377|gb|EFQ64941.1| dihydrouridine synthase TIM-barrel protein YjbN [Pseudomonas
fluorescens WH6]
Length = 328
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 174/242 (71%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ L N EHP+A Q+
Sbjct: 11 RFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAEHPLALQL 70
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+
Sbjct: 71 GGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDA 130
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L
Sbjct: 131 VSIPVTVKHRIGINGRDSYAELCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPPL 190
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y+ LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D +
Sbjct: 191 RYDVAAQLKRDFPELEIVLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQRLF 250
Query: 251 SN 252
+
Sbjct: 251 GS 252
>gi|381400469|ref|ZP_09925434.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
gi|380834514|gb|EIC14354.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
Length = 357
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 187/258 (72%), Gaps = 5/258 (1%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
KR +S+APM++ TDRH R RQITR++WLYTEM AI+ G+ L N E P+A
Sbjct: 26 KRTLSVAPMLDWTDRHYRHMARQITRHTWLYTEMINAGAIVYGDPDRFLQRNECEDPVAL 85
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G +EP LA++A+ ++GYDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+
Sbjct: 86 QLGGSEPTLLAQAAQKAAQYGYDEINLNCGCPSPRVQKGAFGACLMLDVNLVADCLNAMQ 145
Query: 129 DSV-EIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
D+V I IT+KHRIGID Y + DFVG++ + CRTFIVHARNA+L L+PK+NR+
Sbjct: 146 DAVPAIPITIKHRIGIDKQTEYQPLADFVGSLHNKTACRTFIVHARNAWLDGLSPKENRE 205
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L+Y+FVY+LK++FP+LEIIINGG++T +I HL ++DGVM+GREAY NP++M ++D
Sbjct: 206 IPPLRYDFVYHLKQEFPDLEIIINGGVQTNTQIAEHLQHVDGVMMGREAYHNPYIMHDWD 265
Query: 247 LNYYSNLPQYKIPTRIDI 264
+Y + PTR I
Sbjct: 266 TLFYGE--KQPAPTREQI 281
>gi|451977713|ref|ZP_21927782.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
gi|451929428|gb|EMD77176.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
Length = 315
Score = 285 bits (730), Expect = 6e-74, Method: Composition-based stats.
Identities = 134/242 (55%), Positives = 176/242 (72%), Gaps = 2/242 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNKEEHPLALQLGGSNPED 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LAK AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM +P LVSDC+ AM+D V+I +TV
Sbjct: 61 LAKCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVSDCVAAMKDVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 255
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 181 QLKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAPV 240
Query: 256 YK 257
K
Sbjct: 241 KK 242
>gi|288957792|ref|YP_003448133.1| tRNA-dihydrouridine synthase A [Azospirillum sp. B510]
gi|288910100|dbj|BAI71589.1| tRNA-dihydrouridine synthase A [Azospirillum sp. B510]
Length = 335
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRHCR FHR ++ + LYTEM TT A+L G+++ L F+A EHP+A Q+G
Sbjct: 6 LSVAPMMDWTDRHCRYFHRLLSASTLLYTEMVTTGAVLHGDRERLLGFDAAEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA A+I ++WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMRD+V
Sbjct: 66 GSDPADLAACARIAEEWGYDEVNLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMRDAV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI ID++ + + FV TVS+AGC FIVHAR A+LK L+PK+NR IP L+
Sbjct: 126 AIPVTVKSRIAIDEMEEWPTLDHFVRTVSAAGCTHFIVHARKAWLKGLSPKENRDIPPLR 185
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ V+ LK + P L I INGGI+T E + HL +D VM+GR AY+ P+L+++ D
Sbjct: 186 YDLVHRLKAENPHLTIAINGGIRTLDEAEEHLGKVDSVMIGRAAYETPYLLADADRRLTG 245
Query: 252 NLP 254
P
Sbjct: 246 GAP 248
>gi|62182692|ref|YP_219109.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168821313|ref|ZP_02833313.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224586008|ref|YP_002639807.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375117045|ref|ZP_09762215.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|409247917|ref|YP_006888609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|62130325|gb|AAX68028.1| putative TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205342153|gb|EDZ28917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224470536|gb|ACN48366.1| hypothetical protein SPC_4304 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088651|emb|CBY98409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322717191|gb|EFZ08762.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 332
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSCQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|378581909|ref|ZP_09830549.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
gi|377815224|gb|EHT98339.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
Length = 331
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/250 (53%), Positives = 182/250 (72%), Gaps = 1/250 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ ++ ++ S+APM++ TDRHCR FHR +T + LYTEM TT AI+ K L F+ EE
Sbjct: 1 MTDTFSSQRFSVAPMLDWTDRHCRYFHRLLTGDTLLYTEMVTTGAIIHGKGDYLAFSEEE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G ++P LA+ A + ++ YDE+NLN GCPS+RVQNG FGA LM + LV+D
Sbjct: 61 HPVALQLGGSDPAALAQCAALAEQRDYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADG 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPK 182
IKAMRD V+I +TVK RIGID+ +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK
Sbjct: 121 IKAMRDVVDIPVTVKTRIGIDEQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPK 180
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242
+NR+IP L Y VY LK+DFP+L I INGG+KT +E HL ++DGVM+GREAY+NP ++
Sbjct: 181 ENREIPPLDYPRVYQLKRDFPQLTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGIL 240
Query: 243 SNFDLNYYSN 252
++ D +
Sbjct: 241 AHVDREVFGR 250
>gi|145629754|ref|ZP_01785549.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|145632012|ref|ZP_01787761.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|144977993|gb|EDJ87777.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|144982331|gb|EDJ89920.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
Length = 327
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 177/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRCRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCARLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QGVVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|442610331|ref|ZP_21025054.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748107|emb|CCQ11116.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 336
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 172/244 (70%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++++++ LYTEM TT AI+ K L F E P+A Q+
Sbjct: 20 RRFSVAPMLDWTDRHCRTFHRKLSKHAVLYTEMVTTGAIIFGKGDYLSFGEHEMPVALQL 79
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA+ AK GY EINLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 80 GGSDPKALAECAKRAAALGYSEINLNVGCPSDRVQNGRFGACLMAEPKLVAECVAAMKAE 139
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC I+HAR A+LK L+PK+NR+IP L
Sbjct: 140 VSIPVTVKTRIGIDEQDSYEFLTQLIEDCHDVGCDDVIIHARKAWLKGLSPKENREIPPL 199
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+P+L + INGGIKT +E HL ++DGVM+GREAY NPF++S D Y
Sbjct: 200 DYPRVYQLKKDYPQLHVSINGGIKTIEECQHHLQFVDGVMIGREAYANPFMLSQVDELIY 259
Query: 251 SNLP 254
+ P
Sbjct: 260 GDAP 263
>gi|385854520|ref|YP_005901033.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240355]
gi|325203461|gb|ADY98914.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240355]
Length = 336
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 180/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|254786572|ref|YP_003074001.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
gi|237683391|gb|ACR10655.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
Length = 338
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 177/251 (70%), Gaps = 4/251 (1%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK--KHCLDFNAEEHP 65
Y + SIAPMM +DRHCR F R +T+ + LYTEM TT A+L N + L FN+EEHP
Sbjct: 9 YPSFRFSIAPMMEWSDRHCRYFWRLLTKNALLYTEMVTTGALLNNSDVERFLKFNSEEHP 68
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + P +LA+ A + Q+WGYDE+NLNCGCPS+RVQ G GA+LMT+P LV+ C+
Sbjct: 69 LALQLGGSNPDELARCAAMAQQWGYDEVNLNCGCPSDRVQEGKIGAVLMTEPELVAQCVS 128
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
AM+ +I +TVKHRIG+DD + Y+ ++ FV VS AGC+ FIVHAR A+LK L+PK+NR
Sbjct: 129 AMQAECDIPVTVKHRIGVDDQDEYNDLQRFVKVVSEAGCKRFIVHARKAWLKGLSPKENR 188
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
IP L Y V LK++ L+I+INGGI T + L+ +DGVM+GREAY NP+L++
Sbjct: 189 DIPPLNYERVVQLKQEHTALDIVINGGITTLSQCSALLSQLDGVMIGREAYHNPYLLAGV 248
Query: 246 DLNYYS--NLP 254
D Y N+P
Sbjct: 249 DAELYGSDNIP 259
>gi|168231239|ref|ZP_02656297.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470364|ref|ZP_03076348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456728|gb|EDX45567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205334267|gb|EDZ21031.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 332
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSCQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|161870721|ref|YP_001599894.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 053442]
gi|161596274|gb|ABX73934.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 336
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FPELEIIINGG+ T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPELEIIINGGVTTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|423690662|ref|ZP_17665182.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens SS101]
gi|387999486|gb|EIK60815.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens SS101]
Length = 328
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ L N EHP+A Q
Sbjct: 10 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAEHPLALQ 69
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD
Sbjct: 70 LGGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRD 129
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 130 AVSIPVTVKHRIGINGRDSYAQLCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPP 189
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFPELEI +NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 190 LRYDVAAQLKRDFPELEINLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQL 249
Query: 250 YSN 252
+ +
Sbjct: 250 FGS 252
>gi|148826732|ref|YP_001291485.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229847414|ref|ZP_04467514.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|148716892|gb|ABQ99102.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229809652|gb|EEP45378.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|309751771|gb|ADO81755.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2866]
Length = 327
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 177/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRSRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+ K+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSAKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|284929214|ref|YP_003421736.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
gi|284809658|gb|ADB95355.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
Length = 324
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/251 (53%), Positives = 185/251 (73%), Gaps = 5/251 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R F RQIT+++ LYTEM + A+ GNK LDF+++E P++ Q+G
Sbjct: 9 LSVAPMMDRTDRHFRYFIRQITKHTLLYTEMISATAVQNGNKSKLLDFSSDEKPLSLQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
N+P LA+ A I + WGYDE+NLN GCPS+RVQNG FGA LM +P LV+ ++ M++SV
Sbjct: 69 GNDPYTLAECAIIAEDWGYDEVNLNIGCPSDRVQNGRFGACLMAEPELVAKSVEKMQESV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+I ITVKHRIGID+ + Y+ ++ FV VS +GC+ FIVHAR A+L+ L+PK+NR IP L+
Sbjct: 129 DIPITVKHRIGIDECDDYESLKYFVRIVSESGCKKFIVHARKAWLQGLSPKENRNIPPLR 188
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y VY+LKKDFP L I INGGI ++I HL +ID VMLGR AY NP+L++ D ++Y
Sbjct: 189 YQDVYSLKKDFPHLTIEINGGITNLEQISHHLQFIDSVMLGRIAYNNPYLLATVDKDFYK 248
Query: 252 N----LPQYKI 258
+ L +Y+I
Sbjct: 249 SSTTPLTRYQI 259
>gi|167625570|ref|YP_001675864.1| tRNA-dihydrouridine synthase A [Shewanella halifaxensis HAW-EB4]
gi|167355592|gb|ABZ78205.1| TIM-barrel protein, yjbN family [Shewanella halifaxensis HAW-EB4]
Length = 328
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 172/236 (72%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R SIAPM++ TDRH R F R ++ LYTEM TT AIL + L +N EEHP+A Q+
Sbjct: 8 RTFSIAPMLDWTDRHYRYFARLMSSQVLLYTEMVTTGAILHGRGDYLAYNQEEHPLALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 68 GGSNPADLAACAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVSAMKQV 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I ITVK RIGID+ +SY+F+ F+ TV +AGC F +HAR A+L+ L+PK+NR+IP L
Sbjct: 128 VDIPITVKTRIGIDEQDSYEFLTQFIDTVKAAGCEEFTIHARKAWLQGLSPKENREIPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+D+P+L I INGGIKT +E HL ++DGVM+GREAY+NP++++ D
Sbjct: 188 DYERVYQLKRDYPQLNISINGGIKTLEECQTHLQHLDGVMVGREAYQNPYILAEVD 243
>gi|350421252|ref|XP_003492785.1| PREDICTED: miniconductance mechanosensitive channel-like [Bombus
impatiens]
Length = 769
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 177/243 (72%), Gaps = 3/243 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+NS NK S+APM++ TDRHCR FHR +++ + LYTEM TT AIL K L FN +E
Sbjct: 449 MNSTLNK--FSVAPMLDWTDRHCRYFHRLLSQQALLYTEMVTTGAILYGKGDYLAFNEQE 506
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+ Q+G ++P LAK AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+
Sbjct: 507 HPVCLQLGGSDPVALAKCAKLAMQRGYDEINLNVGCPSDRVQNGMFGACLMANAELVARS 566
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
I AMR+ V+I +TVK RIGID+ +SY+F+ F+ TV +TF++HAR A+L L+PK+
Sbjct: 567 IAAMREVVDIPVTVKTRIGIDNEDSYEFLCQFIETVLPY-TQTFVIHARKAWLSGLSPKE 625
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR IP L Y VY +KKD+P+L + INGGIKT +EI HLNY+DGVM+GREAY+NPFL++
Sbjct: 626 NRDIPPLDYPRVYQIKKDYPQLTVAINGGIKTIEEIKTHLNYVDGVMVGREAYQNPFLVT 685
Query: 244 NFD 246
D
Sbjct: 686 QID 688
>gi|417846290|ref|ZP_12492299.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
gi|341952774|gb|EGT79293.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
Length = 327
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 177/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T HCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTLHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKANLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|219871369|ref|YP_002475744.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
gi|219691573|gb|ACL32796.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
Length = 323
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 178/243 (73%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ Y + + S+APM++ T RHCR FHRQ T++S LY+EM T AIL K L ++ E
Sbjct: 1 MQEPYYRGRFSVAPMLDWTTRHCRYFHRQFTQHSLLYSEMITAPAILHAKYDLLAYDPTE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P++LAK AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+ C
Sbjct: 61 NPVALQLGGSDPEQLAKCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVARC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
++AM+ V I +TVKHRIGIDD++SY+F+ DF+ + C FIVHAR A+L L+PK+
Sbjct: 121 VEAMKKEVSIPVTVKHRIGIDDLDSYEFLCDFIEKIQPY-CNDFIVHARKAWLSGLSPKE 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L++ INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLKMSINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 YID 242
>gi|113460197|ref|YP_718254.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 129PT]
gi|112822240|gb|ABI24329.1| tRNA-U16,U17-dihydrouridine synthase [Haemophilus somnus 129PT]
Length = 328
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 178/246 (72%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
M + + + S+APM++ T RHCR FHRQ ++Y+ LYTEM TT AI+ K L ++
Sbjct: 1 MKQNQPHFYRGRFSVAPMLDWTTRHCRFFHRQFSQYTLLYTEMVTTGAIIHAKYDHLAYD 60
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
E+P+A Q+G ++P+KL AK ++ GY EINLN GCPS+RVQNG FGA LM + LV
Sbjct: 61 VSENPVALQLGGSDPEKLQYCAKKAEERGYQEINLNVGCPSDRVQNGMFGACLMARADLV 120
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
++C+ AM+ +V I +TVK R+GID+ +SY+F+ DF+ V + GC+ FI+HAR A+L L+
Sbjct: 121 AECVNAMQSAVNIPVTVKTRLGIDEFDSYEFLCDFIEKVHNIGCQEFIIHARKAWLSGLS 180
Query: 181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240
PK+NR+IP L Y VY LKKDFP+L I INGGIKT +EI HLNY+DGVM+GREAY+NP
Sbjct: 181 PKENREIPPLNYERVYQLKKDFPDLLISINGGIKTLEEIQRHLNYVDGVMVGREAYQNPS 240
Query: 241 LMSNFD 246
L+ D
Sbjct: 241 LLGYID 246
>gi|238782919|ref|ZP_04626947.1| tRNA-dihydrouridine synthase A [Yersinia bercovieri ATCC 43970]
gi|238716122|gb|EEQ08106.1| tRNA-dihydrouridine synthase A [Yersinia bercovieri ATCC 43970]
Length = 339
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 133/249 (53%), Positives = 179/249 (71%), Gaps = 2/249 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A
Sbjct: 17 YPLQRFSVAPMLDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGDYLAYSEQDHPVA 76
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P+ LA AK + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM
Sbjct: 77 LQLGGSDPQALAHCAKQAELRGYNEINLNVGCPSDRVQNGRFGACLMAEANLVADCIKAM 136
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR+
Sbjct: 137 RDVVSIPVTVKTRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENRE 196
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D
Sbjct: 197 VPPLDYERVYQLKRDFPVLTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVD 256
Query: 247 LNYY-SNLP 254
+ SN P
Sbjct: 257 RELFDSNAP 265
>gi|257464833|ref|ZP_05629204.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
gi|257450493|gb|EEV24536.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
Length = 324
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 131/233 (56%), Positives = 174/233 (74%), Gaps = 1/233 (0%)
Query: 14 SIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDN 73
S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E+P+A Q+G +
Sbjct: 11 SVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPAENPVALQLGGS 70
Query: 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 133
+P +LA AK++Q+ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+VEI
Sbjct: 71 DPAQLAHCAKLVQERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAVEI 130
Query: 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193
+TVKHRIGID+++SY F+ DF+ + FIVHAR A+L L+PK+NR+IP L Y
Sbjct: 131 PVTVKHRIGIDELDSYAFLCDFIEKIQPYS-NDFIVHARKAWLSGLSPKENREIPPLDYE 189
Query: 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
VY LK+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D
Sbjct: 190 RVYQLKRDFPHLNISINGGIKTIEEIKHHLQFVDGVMIGREAYQNPSLLGEID 242
>gi|438047594|ref|ZP_20856075.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435319672|gb|ELO92477.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
Length = 304
Score = 285 bits (729), Expect = 9e-74, Method: Composition-based stats.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|417345397|ref|ZP_12125529.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|357953004|gb|EHJ79712.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
Length = 263
Score = 285 bits (729), Expect = 9e-74, Method: Composition-based stats.
Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
+S + + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 7 SSAFPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 66
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 126
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 127 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKE 186
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 187 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILA 246
Query: 244 NFD 246
D
Sbjct: 247 AVD 249
>gi|422683870|ref|ZP_16742126.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331013200|gb|EGH93256.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 339
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 128/244 (52%), Positives = 175/244 (71%), Gaps = 1/244 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A
Sbjct: 20 SRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLAL 79
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 80 QLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAYPQLVADCVKAMR 139
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELSDFVGKVHEAGCESFTVHARIAILEGLSPKENRDIP 199
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFP+LEI++NGGIKT + HL DGVMLGREAY NP+L+++ D
Sbjct: 200 PLRYDVVAQLKSDFPDLEIVLNGGIKTLDQCGEHLQTFDGVMLGREAYHNPYLLAHVDQQ 259
Query: 249 YYSN 252
+ +
Sbjct: 260 LFDS 263
>gi|229589108|ref|YP_002871227.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens SBW25]
gi|229360974|emb|CAY47834.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens SBW25]
Length = 336
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/249 (53%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ L N E
Sbjct: 12 SSPALSRRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAE 71
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
HP+A Q+G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV++C
Sbjct: 72 HPLALQLGGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVAEC 131
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+KAMRD+V I +TVKHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+
Sbjct: 132 VKAMRDAVSIPVTVKHRIGINGRDSYAQLCDFVGTVKDAGCTSFTVHARIAILEGLSPKE 191
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR IP L+Y+ LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP++++
Sbjct: 192 NRDIPPLRYDVAAQLKQDFPELEIVLNGGIKTLEQCHEHLQTFDGVMLGREAYHNPYVLA 251
Query: 244 NFDLNYYSN 252
D + +
Sbjct: 252 EVDQQLFGS 260
>gi|238913008|ref|ZP_04656845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 332
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/236 (56%), Positives = 172/236 (72%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFINTVSGQDECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|416159434|ref|ZP_11605894.1| tRNA dihydrouridine synthase A [Neisseria meningitidis N1568]
gi|433472729|ref|ZP_20430098.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97021]
gi|433481153|ref|ZP_20438424.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2006087]
gi|433483264|ref|ZP_20440501.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2002038]
gi|433485377|ref|ZP_20442582.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97014]
gi|325128934|gb|EGC51788.1| tRNA dihydrouridine synthase A [Neisseria meningitidis N1568]
gi|432212168|gb|ELK68110.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97021]
gi|432218732|gb|ELK74585.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2006087]
gi|432222834|gb|ELK78617.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2002038]
gi|432224289|gb|ELK80055.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97014]
Length = 336
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 181/244 (74%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WL++EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLHSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V+I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T +EI HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEEIAQHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|238760286|ref|ZP_04621429.1| tRNA-dihydrouridine synthase A [Yersinia aldovae ATCC 35236]
gi|238701488|gb|EEP94062.1| tRNA-dihydrouridine synthase A [Yersinia aldovae ATCC 35236]
Length = 349
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
++Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP
Sbjct: 21 ARYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKGDYLAYSEQDHP 80
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G ++P LA AK + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIK
Sbjct: 81 VALQLGGSDPLALAHCAKSAELRGYNEINLNVGCPSDRVQNGRFGACLMGEAELVADCIK 140
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQN 184
AMRD V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+N
Sbjct: 141 AMRDVVSIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECNIFTIHARKAWLSGLSPKEN 200
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R++P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 201 REVPPLNYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPCILAQ 260
Query: 245 FD 246
D
Sbjct: 261 VD 262
>gi|213859447|ref|ZP_03385151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 284
Score = 285 bits (728), Expect = 1e-73, Method: Composition-based stats.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>gi|417951078|ref|ZP_12594187.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
gi|342805351|gb|EGU40621.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
Length = 334
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
SK+ ++S+APM++ TDRHCR FHR +++ + LYTEM TT AIL K L+++ +EHP
Sbjct: 8 SKFQSNRLSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYSEQEHP 67
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + P LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+
Sbjct: 68 LALQLGGSNPVDLAACAKLAVERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCVS 127
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQN 184
AM++ +I ITVK RIGIDD +SY+F+ F+ TVS GC F +HAR A+L L+PK+N
Sbjct: 128 AMKEVTDIPITVKTRIGIDDQDSYEFLTKFISTVSEKGGCEQFTIHARKAWLSGLSPKEN 187
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y+ Y +KKDF +L I +NGGI T ++ HL ++DGVM+GREAY +PF+++
Sbjct: 188 REIPPLDYDRAYQIKKDFSDLVIAVNGGITTLEQTKEHLQHLDGVMIGREAYHSPFILAE 247
Query: 245 FD 246
D
Sbjct: 248 VD 249
>gi|428164490|gb|EKX33514.1| hypothetical protein GUITHDRAFT_81327 [Guillardia theta CCMP2712]
Length = 317
Score = 285 bits (728), Expect = 1e-73, Method: Composition-based stats.
Identities = 134/250 (53%), Positives = 180/250 (72%), Gaps = 8/250 (3%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++ +APMM+ TDR+ R F R I++ +W+Y+EM TT AIL GN+ L F +EHPIA Q
Sbjct: 15 RRLCVAPMMDWTDRYDRYFLRLISKNTWMYSEMVTTSAILNGNQDRLLGFFPQEHPIALQ 74
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P+ LAK AK+ + +GYDEINLN GCPS RV G FGA LM +P LV DC+ AMR+
Sbjct: 75 LGGSDPEDLAKCAKVGESYGYDEINLNVGCPSERVSTGSFGACLMAEPELVRDCVAAMRE 134
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
SV++ +TVKHRIGID ++SYD + FV TV GC+TFIVHAR A LK L+PK+NR+IP
Sbjct: 135 SVKVPVTVKHRIGIDHLDSYDLLCKFVSTVEEGGCKTFIVHARKAILKGLSPKENREIPP 194
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY------IDGVMLGREAYKNPF-LM 242
L+Y+ V+ LK+DFP+LEIIINGGI + HL +DGVM+GR AY P+ ++
Sbjct: 195 LQYHVVHQLKQDFPQLEIIINGGITDLSQARAHLEQAGRAGGMDGVMIGRSAYHEPYKIL 254
Query: 243 SNFDLNYYSN 252
S D+ Y++
Sbjct: 255 SRADMEIYND 264
>gi|392546833|ref|ZP_10293970.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas rubra ATCC 29570]
Length = 337
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 176/241 (73%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AI+ K L F E P+A Q+
Sbjct: 20 RRFSVAPMLDWTDRHCRTFHRKLTQHAVLYTEMITTGAIIFGKGDYLHFGEHEMPVALQL 79
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA+ AK +++GY+E+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 80 GGSDPKALAECAKRAEQYGYNEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMKGE 139
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + +AGC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 140 VSIPVTVKTRIGIDEQDSYEFLTRLIDASKTAGCDDFIIHARKAWLQGLSPKENREIPPL 199
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+D+ +L I INGG+KT +E HL ++DGVM+GREAY NPF+++ D Y
Sbjct: 200 DYPRVYKLKQDYSDLHISINGGVKTIEECQHHLAHLDGVMIGREAYSNPFMLAEVDSALY 259
Query: 251 S 251
Sbjct: 260 G 260
>gi|254494393|ref|ZP_05107564.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268595490|ref|ZP_06129657.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268599350|ref|ZP_06133517.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268602043|ref|ZP_06136210.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID18]
gi|268604377|ref|ZP_06138544.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268684995|ref|ZP_06151857.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268687257|ref|ZP_06154119.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
gi|226513433|gb|EEH62778.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268548879|gb|EEZ44297.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268583481|gb|EEZ48157.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268586174|gb|EEZ50850.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID18]
gi|268588508|gb|EEZ53184.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268625279|gb|EEZ57679.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268627541|gb|EEZ59941.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
Length = 338
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 179/246 (72%), Gaps = 2/246 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
KR++ +APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A
Sbjct: 11 GKRRLCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVA 70
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM
Sbjct: 71 LQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAM 130
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR
Sbjct: 131 HDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRD 190
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 VPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWD 250
Query: 247 LNYYSN 252
+Y +
Sbjct: 251 RLFYGD 256
>gi|268597171|ref|ZP_06131338.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268682834|ref|ZP_06149696.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID332]
gi|268550959|gb|EEZ45978.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268623118|gb|EEZ55518.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID332]
Length = 338
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 179/246 (72%), Gaps = 2/246 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
KR++ +APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A
Sbjct: 11 GKRRLCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVA 70
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM
Sbjct: 71 LQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAM 130
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR
Sbjct: 131 HDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRD 190
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 VPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWD 250
Query: 247 LNYYSN 252
+Y +
Sbjct: 251 RLFYGD 256
>gi|168748106|ref|ZP_02773128.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|168755216|ref|ZP_02780223.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|168766306|ref|ZP_02791313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|168774404|ref|ZP_02799411.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|168780459|ref|ZP_02805466.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|195935832|ref|ZP_03081214.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|208807897|ref|ZP_03250234.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208814168|ref|ZP_03255497.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208821033|ref|ZP_03261353.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209398005|ref|YP_002273589.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|419089390|ref|ZP_13634734.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|424118684|ref|ZP_17852494.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|424168129|ref|ZP_17887061.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|424259338|ref|ZP_17892600.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|424503340|ref|ZP_17950199.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|424509611|ref|ZP_17955952.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|424541244|ref|ZP_17984164.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|424547395|ref|ZP_17989696.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|424553593|ref|ZP_17995394.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|424572241|ref|ZP_18012750.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|424578400|ref|ZP_18018408.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|425141260|ref|ZP_18541617.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|425153050|ref|ZP_18552640.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|425332693|ref|ZP_18720480.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|425338873|ref|ZP_18726186.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|425345164|ref|ZP_18732028.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|425351002|ref|ZP_18737437.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|425357271|ref|ZP_18743309.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|425363226|ref|ZP_18748849.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|425369490|ref|ZP_18754541.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|429075959|ref|ZP_19139194.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444949988|ref|ZP_21268264.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444955588|ref|ZP_21273636.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444993687|ref|ZP_21310312.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|445010034|ref|ZP_21326245.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|445042795|ref|ZP_21358149.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
gi|452968715|ref|ZP_21966942.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4009]
gi|187769933|gb|EDU33777.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|188017450|gb|EDU55572.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|189001854|gb|EDU70840.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|189357455|gb|EDU75874.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|189364132|gb|EDU82551.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|208727698|gb|EDZ77299.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208735445|gb|EDZ84132.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208741156|gb|EDZ88838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209159405|gb|ACI36838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|377925314|gb|EHU89254.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|390673506|gb|EIN49747.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|390716238|gb|EIN89050.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|390717483|gb|EIN90268.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|390821894|gb|EIO88056.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|390827023|gb|EIO92814.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|390862031|gb|EIP24244.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|390865927|gb|EIP27919.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|390874494|gb|EIP35613.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|390890823|gb|EIP50476.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|390914088|gb|EIP72634.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|408242514|gb|EKI65094.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|408251313|gb|EKI73059.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|408255561|gb|EKI76996.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|408262137|gb|EKI83087.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|408270671|gb|EKI90852.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|408273472|gb|EKI93526.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|408281759|gb|EKJ01143.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|408575226|gb|EKK50910.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|408592775|gb|EKK67131.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|427324246|gb|EKW85725.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444553974|gb|ELV31563.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444558675|gb|ELV35946.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444602347|gb|ELV77089.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|444618090|gb|ELV92189.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|444650477|gb|ELW23305.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
Length = 345
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 174/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 23 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 82
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 83 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 142
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 143 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 202
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DF L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 203 IPPLDYPRVYQLKRDFLHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 262
>gi|300714901|ref|YP_003739704.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
gi|299060737|emb|CAX57844.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
Length = 331
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 176/245 (71%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F RQ+TR+S LYTEM TT AI+ K L +N E P+A Q+G
Sbjct: 9 RFSVAPMLDWTDRHCRYFLRQLTRHSLLYTEMVTTGAIVHGKGDYLAWNQAEQPVALQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ LA+ AK + GY+EINLN GCPS+RVQNG FGA LM +P LV+D IKAMRD V
Sbjct: 69 GYDAAALAECAKQAEARGYNEINLNVGCPSDRVQNGRFGACLMGEPALVADGIKAMRDQV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGID+ +SY+F+ +F+ VS GC +FI+HAR A+L L+PK+NR+IP L
Sbjct: 129 SIPVTVKTRIGIDEQDSYEFLCEFIRQVSEQGGCDSFIIHARKAWLSGLSPKENREIPPL 188
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ E +HL ++DGVM+GREAY+NP L++ D +
Sbjct: 189 DYERVYQLKRDFPHLTMSINGGIKSLAEAKVHLQHVDGVMMGREAYQNPGLLAQVDRELF 248
Query: 251 -SNLP 254
S LP
Sbjct: 249 GSELP 253
>gi|428771509|ref|YP_007163299.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
gi|428685788|gb|AFZ55255.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
Length = 336
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/255 (53%), Positives = 182/255 (71%), Gaps = 3/255 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++SIAPMM+ TDRH R R +T+++ LYTEM TTQAI+ G++ LDF+ EE P+A Q+
Sbjct: 18 RVSIAPMMDYTDRHFRYVMRVLTKHTLLYTEMITTQAIIHGDRTKLLDFSPEEKPVALQL 77
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P++LA+ AKI WGYDEINLN GCPS+RVQNG FGA LM +P V+ C++AM +
Sbjct: 78 GGDNPQQLAECAKIGADWGYDEINLNVGCPSSRVQNGNFGACLMAQPDTVARCVEAMNKA 137
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVKHRIGIDD +SY + +F+ VSS GC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 138 VNIPVTVKHRIGIDDQDSYGDLLNFIKIVSSTGCDRFIIHARKAWLQGLSPKENREIPPL 197
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y VY +K+D P L I INGGIKT + HL +DGVM+GR AY NP+L ++ D Y
Sbjct: 198 RYEDVYQIKQDLPHLTIEINGGIKTIEATKQHLTKVDGVMIGRAAYDNPYLFASIDQEIY 257
Query: 251 SNLPQYKIPTRIDII 265
+ I TR +I+
Sbjct: 258 GS--SEPIKTREEIV 270
>gi|325576762|ref|ZP_08147377.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
gi|325160968|gb|EGC73086.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
Length = 328
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/239 (54%), Positives = 175/239 (73%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++ + LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI M
Sbjct: 68 LQLGGSDPAQLKHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVAECIAEM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY F+ DF+ V AGC+ FIVHAR A+L L+PK+NR+I
Sbjct: 128 QRVVNIPVTVKTRIGIDDLDSYQFLCDFIKKVHHAGCQEFIVHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y+ VY LKKDFP+L I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYDRVYQLKKDFPQLTIAINGGIKTIEEMKHHLQFVDGVMVGREAYQNPSLLGYVD 246
>gi|423126869|ref|ZP_17114548.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
gi|376396338|gb|EHT08979.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
Length = 313
Score = 284 bits (727), Expect = 1e-73, Method: Composition-based stats.
Identities = 134/230 (58%), Positives = 171/230 (74%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TV
Sbjct: 61 LAHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L + INGGIK+ +E LHL ++DGVM+GREAY+NP ++++ D
Sbjct: 181 QLKRDFPHLTMAINGGIKSLEEAKLHLAHMDGVMVGREAYQNPGILASVD 230
>gi|71736634|ref|YP_274126.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557187|gb|AAZ36398.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 339
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGNVQEAGCGSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FDS 263
>gi|254796068|ref|YP_003080905.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|254595468|gb|ACT74829.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
Length = 330
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 174/240 (72%), Gaps = 1/240 (0%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
Y + S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A
Sbjct: 8 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM
Sbjct: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRK 186
RD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+
Sbjct: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L Y VY LK+DF L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 188 IPPLDYPRVYQLKRDFLHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247
>gi|298158920|gb|EFH99980.1| tRNA dihydrouridine synthase A [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 339
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCGSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FDS 263
>gi|399116283|emb|CCG19088.1| putative oxygen-independent coprophorphyrinogen III oxidasee
[Taylorella asinigenitalis 14/45]
Length = 397
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/353 (42%), Positives = 211/353 (59%), Gaps = 40/353 (11%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E+ +L AL D+ +LP I R I ++FIGGGTPSL+S +D +L+ ++ LL
Sbjct: 44 GIPEEAFLRALEEDLIYNLPHIWGRSIISVFIGGGTPSLLSVAAIDRILQILRNLLNISS 103
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+I IT+EANP+TF+ +KF SY GINRLSIG+QSFNN++L LGR HDS A A EIA
Sbjct: 104 DIEITMEANPATFDSDKFASYRSSGINRLSIGVQSFNNEHLKALGRIHDSDDAVRAAEIA 163
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
++F NFNLDL+YALPNQ++ + DL A++ HLS+Y LT+EPNT F K+PP MP
Sbjct: 164 HKHFENFNLDLMYALPNQSVENSISDLQMALKLDSTHLSMYQLTLEPNTVFAKFPPPRMP 223
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
S+D+ M++ + + + +K YE+SAY+K G++ HN NYW+FGDYL
Sbjct: 224 SDDDIINMEEALVDIADAHGFKRYEVSAYAKHGWQCSHNRNYWEFGDYLGIGPGAHSKIS 283
Query: 871 -----------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFS 901
G I +S+ + L FEFMLNALRL++G
Sbjct: 284 FHDKIVREVRERHPMRWMEKVLSGEKGEKGAQIIESRSVGVHELPFEFMLNALRLREGVP 343
Query: 902 PNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+ F ER G++I ++ L+ A K GL+ ++ T G +LN+LQ+IFL
Sbjct: 344 THYFEERCGVSIAVLLPLLEEAVKKGLMSELPTELRATELGWKYLNNLQEIFL 396
>gi|416026370|ref|ZP_11569819.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320329184|gb|EFW85181.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 339
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCGSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FDS 263
>gi|59801940|ref|YP_208652.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA 1090]
gi|194099440|ref|YP_002002542.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae NCCP11945]
gi|240014854|ref|ZP_04721767.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI18]
gi|240017300|ref|ZP_04723840.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA6140]
gi|240121373|ref|ZP_04734335.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID24-1]
gi|291043074|ref|ZP_06568797.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|293398413|ref|ZP_06642591.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae F62]
gi|385336396|ref|YP_005890343.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
gi|59718835|gb|AAW90240.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934730|gb|ACF30554.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|291012680|gb|EFE04663.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|291610884|gb|EFF39981.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae F62]
gi|317164939|gb|ADV08480.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
Length = 348
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 179/246 (72%), Gaps = 2/246 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
KR++ +APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A
Sbjct: 21 GKRRLCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVA 80
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM
Sbjct: 81 LQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAM 140
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR
Sbjct: 141 HDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRD 200
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 201 VPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWD 260
Query: 247 LNYYSN 252
+Y +
Sbjct: 261 RLFYGD 266
>gi|433677434|ref|ZP_20509415.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430817439|emb|CCP39810.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 339
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 176/247 (71%), Gaps = 1/247 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR+FHR + + LYTEM A+ LG++ L F+A EHP+A Q+
Sbjct: 19 RLSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLGFDAVEHPLALQL 78
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC+ M +
Sbjct: 79 GGSDPALLAQAARIGQGWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVATMVQA 138
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK R+G+D + Y+ FV V++AGCR F+VHARNA+L+ L+PK+NR++P L
Sbjct: 139 VDIPVTVKCRLGVDQDDDYEVFLAFVDQVAAAGCRLFVVHARNAWLQGLSPKENREVPPL 198
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y++ Y LK++ P+L++++NGG+ L+ +DGVMLGR AY +P+++ D
Sbjct: 199 RYDWAYRLKRERPQLQVVLNGGLADVDTARAQLDAVDGVMLGRAAYHDPYVLHRLDAALT 258
Query: 251 SNLPQYK 257
P+ +
Sbjct: 259 GATPRPR 265
>gi|416168181|ref|ZP_11607884.1| tRNA dihydrouridine synthase A [Neisseria meningitidis OX99.30304]
gi|325130878|gb|EGC53608.1| tRNA dihydrouridine synthase A [Neisseria meningitidis OX99.30304]
Length = 336
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 180/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP+LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPDLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|340001601|ref|YP_004732485.1| hypothetical protein SBG_3688 [Salmonella bongori NCTC 12419]
gi|339514963|emb|CCC32734.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 381
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 175/243 (72%), Gaps = 2/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ +N R S+APM++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEH
Sbjct: 57 DNHWNGR-FSVAPMLDWTDRHCRYFLRLLSHQTLLYTEMVTTGAIIHGKGDYLAYSEEEH 115
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+D I
Sbjct: 116 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGLFGACLMGNAQLVADSI 175
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY F+ DF+ TVS G C TFI+HAR A+L L+PK+
Sbjct: 176 KAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGRGECETFIIHARKAWLSGLSPKE 235
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ E HL Y+DGVM+GREAY+NP +++
Sbjct: 236 NREIPPLDYPRVYQLKRDFPHLTLSINGGIKSLAEAKEHLKYMDGVMVGREAYQNPGILA 295
Query: 244 NFD 246
D
Sbjct: 296 AVD 298
>gi|416015788|ref|ZP_11563254.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|320324818|gb|EFW80890.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
Length = 339
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q
Sbjct: 21 RRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 80
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPGLVADCVKAMRD 140
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 141 AVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCGSFTVHARIAILEGLSPKENRDIPP 200
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D
Sbjct: 201 LRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQL 260
Query: 250 YSN 252
+ +
Sbjct: 261 FDS 263
>gi|440739646|ref|ZP_20919153.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens BRIP34879]
gi|440379117|gb|ELQ15720.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens BRIP34879]
Length = 336
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 176/243 (72%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ + L + EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRYFLRLLSKHALLYTEMVTTGAILHGDHERFLRHSEAEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYAQLCDFVGQVKDAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFPELEII+NGGIKT ++ + HL DGVMLGREAY NP++++ D
Sbjct: 198 LRYDVAAQLKQDFPELEIILNGGIKTLEQCEKHLQTFDGVMLGREAYHNPYVLAEVDQRL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|297537274|ref|YP_003673043.1| oxygen-independent coproporphyrinogen III oxidase [Methylotenera
versatilis 301]
gi|297256621|gb|ADI28466.1| oxygen-independent coproporphyrinogen III oxidase [Methylotenera
versatilis 301]
Length = 382
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 207/337 (61%), Gaps = 35/337 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E Y++AL+ D+EL+ P + RKI ++F GGGTPSL S +D +L +++ L +
Sbjct: 35 GAIPESAYVDALIADLELATPKVWGRKIKSVFFGGGTPSLFSAEAIDRILSHVRMLTPLE 94
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP T + F Y G+NRLS+GIQSF + YL LGR HDS+QA A+E+
Sbjct: 95 FDAEITLEANPGTVDAANFVGYKQAGVNRLSLGIQSFKSDYLKALGRIHDSEQAFAAVEL 154
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A + F+ N D++Y LPNQ+L + M D A++ +P HLS Y LT+EPNT F++ PP S+
Sbjct: 155 AMKTFDQVNCDIMYGLPNQSLEDAMQDAQTAVRLNPTHLSFYHLTLEPNTPFYRTPP-SL 213
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--------- 871
P +D ++ MQ I +LL N Y++YE SA++K G +++HNLNYW+FGDYLG
Sbjct: 214 PDDDTSSDMQIAIETLLAENGYEHYETSAFAKKGKQAKHNLNYWQFGDYLGIGAGAHSKL 273
Query: 872 -------------------NSIAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFF 906
+ K +E++ LI FEFM+NALRL DG +LF
Sbjct: 274 SYHDKITREVRPKHPKAYMEQALQGKAVEREWLIPQNELGFEFMMNALRLIDGVPVDLFQ 333
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 943
+RTG+NI+ +++ +K A+ GLL NI+PT G+
Sbjct: 334 QRTGLNIRTLQAAIKTAQSKGLLIIEAGNIQPTLLGQ 370
>gi|161505294|ref|YP_001572406.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866641|gb|ABX23264.1| hypothetical protein SARI_03435 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 345
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 172/236 (72%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +L AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 87 GSDPAQLTHCAKLAEVRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 147 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 207 DYPRVYQLKRDFPHLNMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 262
>gi|410473259|ref|YP_006896540.1| porphyrin oxidoreductase [Bordetella parapertussis Bpp5]
gi|408443369|emb|CCJ50023.1| putative porphyrin oxidoreductase [Bordetella parapertussis Bpp5]
Length = 406
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 208/350 (59%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E ++P + R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLL 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ RLS+GIQSF++ L+ LGR HD+ QA+ AI +
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSRLGRIHDAAQARAAIAM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q NLDL++ALP Q L + DL A+ + HLSLY LT+EPNT F KYPP +
Sbjct: 178 AQQAVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPP-EL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+ + L FEFMLNALRLKDG + +
Sbjct: 297 SFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFEFMLNALRLKDGVAASS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ++FL
Sbjct: 357 FGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLNDLQEMFL 406
>gi|423685022|ref|ZP_17659830.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
gi|371496069|gb|EHN71663.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
Length = 328
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 175/248 (70%), Gaps = 1/248 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
S Y ++ S+APM++ TDRHCR FHRQ++ ++ LYTEM TT AI+ K L +N EEHP
Sbjct: 2 SSYPLQRFSVAPMLDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGDFLAYNEEEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + K L AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+
Sbjct: 62 VALQLGGSNVKDLVHCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVA 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQN 184
M+ V+I +TVK RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+N
Sbjct: 122 EMKAVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKEN 181
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y Y +KKDFP+L I +NGGIKT E HL ++DGVM+GREAY++P+L++
Sbjct: 182 REIPPLDYPRAYQIKKDFPQLIIAVNGGIKTLAEAKEHLEHLDGVMIGREAYQSPYLLAE 241
Query: 245 FDLNYYSN 252
D + +
Sbjct: 242 VDQQLFGS 249
>gi|261401825|ref|ZP_05987950.1| tRNA dihydrouridine synthase A [Neisseria lactamica ATCC 23970]
gi|269208032|gb|EEZ74487.1| tRNA dihydrouridine synthase A [Neisseria lactamica ATCC 23970]
Length = 336
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM++
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQE 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|433468576|ref|ZP_20426012.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 98080]
gi|432206157|gb|ELK62169.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 98080]
Length = 336
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 180/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V+I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|410419980|ref|YP_006900429.1| porphyrin oxidoreductase [Bordetella bronchiseptica MO149]
gi|427821618|ref|ZP_18988680.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica Bbr77]
gi|408447275|emb|CCJ58948.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica MO149]
gi|410586883|emb|CCN01912.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica Bbr77]
Length = 406
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 208/350 (59%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E ++P + R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLL 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ RLS+GIQSF++ L+ LGR HD+ QA+ AI +
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSKLGRIHDAAQARAAIAM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q NLDL++ALP Q L + DL A+ + HLSLY LT+EPNT F KYPP +
Sbjct: 178 AQQAVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPP-EL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+ + L FEFMLNALRLKDG + +
Sbjct: 297 SFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFEFMLNALRLKDGVAASS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ++FL
Sbjct: 357 FGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLNDLQEMFL 406
>gi|393757976|ref|ZP_10346800.1| coproporphyrinogen III oxidase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165668|gb|EJC65717.1| coproporphyrinogen III oxidase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 385
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 208/352 (59%), Gaps = 37/352 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
+ E +YL+AL D+E +LP++ R++ ++FIGGGTPSL+S LD +L ++ L
Sbjct: 32 AQLPENEYLDALQADLEQTLPLVWGRQVISVFIGGGTPSLLSAQALDRMLAMLRAHLNLL 91
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ ITLEANP E +F Y+ G+NR+S+GIQSFN++ L LGR HDS+QA+ AIE
Sbjct: 92 PDAEITLEANPGASEASRFMDYAHSGVNRISLGIQSFNDQALKALGRIHDSQQARQAIEA 151
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A + + NLD++YALP QT ++ D+ A+ Y HLSLY LT+EPNT F KYPP ++
Sbjct: 152 ALKAVDRVNLDVMYALPGQTPAQSEHDILQAMSYETEHLSLYHLTLEPNTVFAKYPP-AL 210
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D++A MQD++ L + ++ YEISAYSK G S+HNLNYW+FGDY+
Sbjct: 211 PDDDDSAAMQDRLIELTASRGWEQYEISAYSKRGGHSRHNLNYWEFGDYIGIGPGAHGKL 270
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ A + ++ + L FEFMLNALRLK G
Sbjct: 271 SFHDRIIRTATTRSPAQWMQTAVKRDGSHYAHNARVSPQDLPFEFMLNALRLKAGVPSQY 330
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN 956
F ERTG+ + I ++ + GLL + I+ T G FLNDLQ+ FL +
Sbjct: 331 FQERTGVPLAQILPTIRGNIEKGLLAADPLRIRTTDLGWRFLNDLQEAFLPD 382
>gi|59710914|ref|YP_203690.1| tRNA-dihydrouridine synthase A [Vibrio fischeri ES114]
gi|59479015|gb|AAW84802.1| NifR3/Smm1 family protein [Vibrio fischeri ES114]
Length = 328
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 175/248 (70%), Gaps = 1/248 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
S Y ++ S+APM++ TDRHCR FHRQ++ ++ LYTEM TT AI+ K L +N EEHP
Sbjct: 2 SSYPLQRFSVAPMLDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGDFLAYNEEEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + K L AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+
Sbjct: 62 VALQLGGSNVKDLVHCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVA 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQN 184
M+ V+I +TVK RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+N
Sbjct: 122 EMKAVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKEN 181
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y Y +KKDFP+L I +NGGIKT E HL ++DGVM+GREAY++P+L++
Sbjct: 182 REIPPLDYPRAYQIKKDFPQLIIAVNGGIKTLSEAKEHLEHLDGVMIGREAYQSPYLLAE 241
Query: 245 FDLNYYSN 252
D + +
Sbjct: 242 VDQQLFGS 249
>gi|308125855|ref|ZP_07663540.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|433658796|ref|YP_007276175.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
gi|308113305|gb|EFO50845.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|432509484|gb|AGB11001.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
Length = 315
Score = 283 bits (725), Expect = 2e-73, Method: Composition-based stats.
Identities = 132/242 (54%), Positives = 177/242 (73%), Gaps = 2/242 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPED 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LAK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V++ +TV
Sbjct: 61 LAKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 255
LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 181 QLKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAPV 240
Query: 256 YK 257
K
Sbjct: 241 KK 242
>gi|424789365|ref|ZP_18216029.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422798588|gb|EKU26662.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 339
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 121/256 (47%), Positives = 180/256 (70%), Gaps = 2/256 (0%)
Query: 4 INSKYNKR-KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNA 61
++++Y ++S+APMM+ TDRHCR+FHR + + LYTEM A+ LG++ L F+A
Sbjct: 10 LSARYAASLRLSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLGFDA 69
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
EHP+A Q+G ++P LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+
Sbjct: 70 VEHPLALQLGGSDPALLAQAARIGQAWGYDEINLNCGCPSDRVQAGRFGACLMREPALVA 129
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DC+ AM +V+I +TVK R+G+D + Y FV V++AGC F+VHARNA+L+ L+P
Sbjct: 130 DCVAAMAQAVDIPVTVKCRLGVDQDDDYAVFLAFVDQVAAAGCGLFVVHARNAWLQGLSP 189
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR++P L+Y++ Y LK++ P+L+I++NGG+ L+ +DGVMLGR AY +P++
Sbjct: 190 KENREVPPLRYDWAYRLKRERPQLQIVLNGGLADVDTARAQLDAVDGVMLGRAAYHDPYV 249
Query: 242 MSNFDLNYYSNLPQYK 257
+ D P+ +
Sbjct: 250 LHRLDAALTGATPRPR 265
>gi|152978183|ref|YP_001343812.1| tRNA-dihydrouridine synthase A [Actinobacillus succinogenes 130Z]
gi|150839906|gb|ABR73877.1| TIM-barrel protein, yjbN family [Actinobacillus succinogenes 130Z]
Length = 326
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/245 (53%), Positives = 178/245 (72%), Gaps = 1/245 (0%)
Query: 3 MINSKYNKR-KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
M N Y R + S+APM++ T RHCR FHRQ +R++ LYTEM TTQAI+ L F+
Sbjct: 1 MQNPSYFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIVHAGYDHLAFDT 60
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
E+P+A Q+G ++P +LA AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+
Sbjct: 61 AENPVALQLGGSDPVQLAHCAKLAEERGYREINLNVGCPSDRVQNGMFGACLMAKADLVA 120
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
+C+ M+ +V I +TVK RIGID+++SY+F+ DFV +++AGC+ IVHAR A+L L+P
Sbjct: 121 ECVTKMQAAVSIPVTVKTRIGIDELDSYEFLYDFVHKITNAGCQELIVHARKAWLSGLSP 180
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y VY LK+DFP + I INGGIKT +E+ HL +DGVM+GREAY+NP L
Sbjct: 181 KENREIPPLDYERVYQLKRDFPHILISINGGIKTIEEMTAHLQQVDGVMVGREAYQNPSL 240
Query: 242 MSNFD 246
+ D
Sbjct: 241 LGYID 245
>gi|423112047|ref|ZP_17099741.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|423117437|ref|ZP_17105128.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
gi|376375372|gb|EHS88164.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|376375567|gb|EHS88353.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
Length = 313
Score = 283 bits (725), Expect = 3e-73, Method: Composition-based stats.
Identities = 133/230 (57%), Positives = 171/230 (74%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TV
Sbjct: 61 LAHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D
Sbjct: 181 QLKRDFPHLTMAINGGIKSLEEAKEHLEHMDGVMVGREAYQNPGILASVD 230
>gi|392536593|ref|ZP_10283730.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas marina mano4]
Length = 324
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 181/255 (70%), Gaps = 2/255 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+
Sbjct: 8 RRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P+ LAK AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM++
Sbjct: 68 GGSDPEALAKCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKNE 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +TVK RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L
Sbjct: 128 VSIPVTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LKKD+ +L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y
Sbjct: 188 DYPRVYQLKKDYQQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIY 247
Query: 251 SNLPQYKIPTRIDII 265
+ + TR D++
Sbjct: 248 GDTANTQ--TRHDVV 260
>gi|401678882|ref|ZP_10810835.1| DusA Protein [Enterobacter sp. SST3]
gi|400213867|gb|EJO44800.1| DusA Protein [Enterobacter sp. SST3]
Length = 313
Score = 283 bits (725), Expect = 3e-73, Method: Composition-based stats.
Identities = 132/230 (57%), Positives = 171/230 (74%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TV
Sbjct: 61 LAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 181 QLKRDFPHLTMSINGGIKSLEEAKAHLEHMDGVMVGREAYQNPGILATVD 230
>gi|209694000|ref|YP_002261928.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
gi|208007951|emb|CAQ78084.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
Length = 338
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/257 (51%), Positives = 179/257 (69%), Gaps = 6/257 (2%)
Query: 2 NMINSK-----YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHC 56
N +NSK + ++ S+APM++ TDRHCR FHRQ++ ++ LY+EM TT AI+ K
Sbjct: 3 NTLNSKEILTMHPLQRFSVAPMLDWTDRHCRYFHRQLSEHALLYSEMITTGAIIHGKGDF 62
Query: 57 LDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK 116
L +N EEHP+A Q+G + K LA AK+ GYDEINLN GCPS+RVQNG FGA LM
Sbjct: 63 LAYNEEEHPLALQLGGSNAKDLAHCAKLAADRGYDEINLNVGCPSDRVQNGRFGACLMAD 122
Query: 117 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAF 175
P LV++CI M+ V+I +TVK RIGIDD +SY+F+ FV TV GC F +HAR A+
Sbjct: 123 PELVAECIAEMKAVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAW 182
Query: 176 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREA 235
L L+PK+NR+IP L Y Y +KKDFP+L I +NGGIKT +E HL ++DGVM+GREA
Sbjct: 183 LSGLSPKENREIPPLDYPRAYQIKKDFPQLIIAVNGGIKTLEEAKEHLAHLDGVMIGREA 242
Query: 236 YKNPFLMSNFDLNYYSN 252
Y++P+L++ D + +
Sbjct: 243 YQSPYLLAEVDQQLFGS 259
>gi|88800086|ref|ZP_01115656.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
gi|88777212|gb|EAR08417.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
Length = 338
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/251 (54%), Positives = 178/251 (70%), Gaps = 3/251 (1%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAE 62
+N Y K +APMM+ T CR FHR +TR + LYTEM TT A++ GN L ++ E
Sbjct: 1 MNQAY-PHKFQVAPMMDWTTSECRQFHRLLTRQALLYTEMVTTGALIHGNAGRFLRYDTE 59
Query: 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
EHPIA Q+G ++ +LA K+ ++ GYD++NLN GCPS+RVQNG GAILM V+D
Sbjct: 60 EHPIALQLGGHDADELAHCTKMAEEHGYDQVNLNAGCPSDRVQNGMIGAILMAHADKVTD 119
Query: 123 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
+KAM+D V I +T+KHRIGIDD +SY+F+RDFVG VS +GC TFIVHAR A L L+PK
Sbjct: 120 ALKAMQDRVNIPVTLKHRIGIDDYDSYEFLRDFVGQVSLSGCDTFIVHARKAILSGLSPK 179
Query: 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 241
+NR+IP L Y+ V LK+DFP L I+INGGIK+ +E +N +DGVMLGREAY+NP +
Sbjct: 180 ENREIPPLDYDRVIRLKQDFPNLNIVINGGIKSHQEAQALINRGLDGVMLGREAYQNPLI 239
Query: 242 MSNFDLNYYSN 252
+S D YY +
Sbjct: 240 LSEVDHIYYGH 250
>gi|167855851|ref|ZP_02478602.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
gi|167853001|gb|EDS24264.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
Length = 323
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+ Y + + S+APM++ T RHCR FHRQ T++S LY+EM AIL K L ++ E
Sbjct: 1 MQEPYYRGRFSVAPMLDWTTRHCRYFHRQFTQHSLLYSEMIIAPAILHAKYDLLAYDPTE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G ++P++LAK AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+ C
Sbjct: 61 NPVALQLGGSDPEQLAKCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVARC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
++AM+ V I +TVKHRIGIDD++SY+F+ DF+ + C FIVHAR A+L L+PK+
Sbjct: 121 VEAMKKEVSIPVTVKHRIGIDDLDSYEFLCDFIEKIQPY-CNDFIVHARKAWLSGLSPKE 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPHLKISINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLG 239
Query: 244 NFD 246
D
Sbjct: 240 YID 242
>gi|197334068|ref|YP_002155065.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
gi|197315558|gb|ACH65005.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
Length = 328
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 175/248 (70%), Gaps = 1/248 (0%)
Query: 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP 65
S Y ++ S+APM++ TDRHCR FHRQ++ ++ LYTEM TT AI+ K L +N EEHP
Sbjct: 2 SSYPLQRFSVAPMLDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGDFLAYNEEEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G + K L AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+
Sbjct: 62 VALQLGGSNVKDLVHCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVA 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQN 184
M+ V+I +TVK RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+N
Sbjct: 122 EMKAVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKEN 181
Query: 185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
R+IP L Y Y +KKDFP+L I +NGGIKT E HL ++DGVM+GREAY++P+L++
Sbjct: 182 REIPPLDYPRAYQIKKDFPQLIIAVNGGIKTLAEAKEHLAHLDGVMIGREAYQSPYLLAE 241
Query: 245 FDLNYYSN 252
D + +
Sbjct: 242 VDQQLFGS 249
>gi|427419226|ref|ZP_18909409.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
gi|425761939|gb|EKV02792.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
Length = 341
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/244 (54%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R F RQIT+ + LYTEM T QAIL G++ L F+ E P++ Q+G
Sbjct: 13 LSVAPMMDRTDRHFRYFMRQITQKTLLYTEMITAQAILHGDRTKLLGFDPLEKPLSLQIG 72
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LAK A+I + GYDE+NLN GCPSNRVQ+G FGA LM++P LV+DC+ AM+ V
Sbjct: 73 GDDPQLLAKCAQIAEDMGYDEVNLNVGCPSNRVQSGNFGACLMSQPELVADCVAAMQAVV 132
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+I +TVKHRIGIDD + Y+ + FV TV++AGC F VHAR A+L+ L+PK NR IP L+
Sbjct: 133 DIPVTVKHRIGIDDCDRYEDMVRFVTTVTAAGCHRFTVHARKAWLQGLSPKDNRTIPPLR 192
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN-YY 250
Y+ VY LK++ PEL I INGGIKT +E D HL +D VM+GR AY P+L + D + Y
Sbjct: 193 YDDVYRLKQEHPELWIEINGGIKTLEEADTHLQQVDAVMIGRAAYDTPYLFAVADRDIYA 252
Query: 251 SNLP 254
+N P
Sbjct: 253 ANAP 256
>gi|345429046|ref|YP_004822163.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
gi|301155106|emb|CBW14569.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
Length = 328
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/239 (54%), Positives = 175/239 (73%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++ + LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI M
Sbjct: 68 LQLGGSDPAQLKHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVAECIAEM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ DF+ V GC+ FIVHAR A+L L+PK+NR+I
Sbjct: 128 QRVVNIPVTVKTRIGIDDLDSYEFLCDFIEKVHHDGCQEFIVHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y+ VY LKKDFP+L I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYDRVYQLKKDFPQLTIAINGGIKTIEEMKYHLQFVDGVMVGREAYQNPSLLGYID 246
>gi|421541689|ref|ZP_15987805.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM255]
gi|402319537|gb|EJU55045.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM255]
Length = 336
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|392307186|ref|ZP_10269720.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas citrea NCIMB
1889]
Length = 337
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 172/236 (72%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TD+HCR FHR++T+++ LYTEM TT AIL K L F E P+A Q+
Sbjct: 21 RRFSVAPMLDWTDKHCRTFHRKLTKHAVLYTEMITTGAILFGKGDYLAFGEHEMPVALQL 80
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK LA+ AK ++GY+EINLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 81 GGSDPKALAECAKRAGEYGYNEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKAE 140
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
VEI +TVK RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L
Sbjct: 141 VEIPVTVKTRIGIDEQDSYEFLTALIEASQQVGCDDFIIHARKAWLKGLSPKENREVPPL 200
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LKKDF +L I INGG+KT + HL ++DGVM+GREAY NP+++S D
Sbjct: 201 DYPRVYQLKKDFADLHISINGGVKTLDDCQQHLAHLDGVMIGREAYSNPYMLSQVD 256
>gi|304386595|ref|ZP_07368883.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ATCC 13091]
gi|304339424|gb|EFM05496.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ATCC 13091]
Length = 348
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 179/246 (72%), Gaps = 2/246 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
KR++ +APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A
Sbjct: 21 GKRRLCVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVA 80
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM
Sbjct: 81 LQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAM 140
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
+D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR
Sbjct: 141 QDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRD 200
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P LKY++VY LK++FPELEIIINGGI + I HL ++DGVM+GREAY NP +M +D
Sbjct: 201 VPPLKYDYVYRLKQEFPELEIIINGGITANEAIAGHLQHVDGVMVGREAYHNPIVMREWD 260
Query: 247 LNYYSN 252
+Y +
Sbjct: 261 RLFYGD 266
>gi|386266637|ref|YP_005830129.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
gi|309973873|gb|ADO97074.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
Length = 327
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 126/239 (52%), Positives = 176/239 (73%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK R GID+++SY+F+ DF+ V GC+ FI+HAR A+L L+ K+NR+I
Sbjct: 128 QSAVKIPVTVKTRTGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSAKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>gi|408415727|ref|YP_006626434.1| porphyrin oxidoreductase [Bordetella pertussis 18323]
gi|401777897|emb|CCJ63250.1| putative porphyrin oxidoreductase [Bordetella pertussis 18323]
Length = 406
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 208/350 (59%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+ALL D+E ++P + R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALLADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLL 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ RLS+GIQSF++ L+ LGR HD+ QA+ AI +
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSRLGRIHDAAQARAAIAM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q NLDL++ALP Q L + DL A+ + HLSLY LT+EPNT F KYPP +
Sbjct: 178 AQQTVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPP-EL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+ + L FEFMLNALRLK+G +
Sbjct: 297 SFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFEFMLNALRLKEGVAAPS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ++FL
Sbjct: 357 FGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLNDLQEMFL 406
>gi|421554100|ref|ZP_16000050.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 98008]
gi|402333727|gb|EJU69026.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 98008]
Length = 336
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|452124904|ref|ZP_21937488.1| tRNA-dihydrouridine synthase A [Bordetella holmesii F627]
gi|452128311|ref|ZP_21940888.1| tRNA-dihydrouridine synthase A [Bordetella holmesii H558]
gi|451924134|gb|EMD74275.1| tRNA-dihydrouridine synthase A [Bordetella holmesii F627]
gi|451925358|gb|EMD75496.1| tRNA-dihydrouridine synthase A [Bordetella holmesii H558]
Length = 323
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 177/250 (70%), Gaps = 4/250 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
M+++TDRHCR FHR + ++ LYTEM TT A+L GN + LDF+ EHP+A Q+G +EP
Sbjct: 1 MIDVTDRHCRFFHRLLAPHARLYTEMITTGALLHGNVERHLDFDDAEHPVALQLGGSEPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA +A++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+V I +T
Sbjct: 61 ALAAAARLGQQWGYDEINLNCGCPSERVQRGAFGACLMAEPDLVADCIKAMQDAVGIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHR+G+D +SY FVRDFVG + + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 121 VKHRLGLDYDDSYAFVRDFVGKLHATGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVAE 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
L++DFP+ I++NGG+ + DGVMLGR A+ P ++S L + P
Sbjct: 181 QLRRDFPDCVIVLNGGLADAGQAVQAFARFDGVMLGRAAWHTPRVLSEVSLRLW---PST 237
Query: 257 KIPTRIDIIN 266
++P+ +++
Sbjct: 238 RLPSDAQVVD 247
>gi|385338702|ref|YP_005892575.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
gi|319411116|emb|CBY91521.1| K05539 tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE
2594]
Length = 338
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 179/246 (72%), Gaps = 2/246 (0%)
Query: 9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIA 67
KR++ +APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A
Sbjct: 11 GKRRLCVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVA 70
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM
Sbjct: 71 LQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAM 130
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
+D+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR
Sbjct: 131 QDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRD 190
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+P LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 VPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWD 250
Query: 247 LNYYSN 252
+Y +
Sbjct: 251 RLFYGD 256
>gi|218768876|ref|YP_002343388.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis Z2491]
gi|433474824|ref|ZP_20432171.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 88050]
gi|433479135|ref|ZP_20436433.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63041]
gi|433512709|ref|ZP_20469510.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63049]
gi|433514849|ref|ZP_20471624.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2004090]
gi|433516934|ref|ZP_20473686.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 96023]
gi|433519124|ref|ZP_20475848.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 65014]
gi|433523273|ref|ZP_20479944.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97020]
gi|433528800|ref|ZP_20485407.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3652]
gi|433529607|ref|ZP_20486205.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3642]
gi|433531724|ref|ZP_20488292.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2007056]
gi|433533934|ref|ZP_20490482.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2001212]
gi|433540279|ref|ZP_20496735.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63006]
gi|121052884|emb|CAM09236.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|432212333|gb|ELK68272.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 88050]
gi|432218489|gb|ELK74347.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63041]
gi|432249788|gb|ELL05188.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63049]
gi|432255772|gb|ELL11100.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 96023]
gi|432255909|gb|ELL11235.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2004090]
gi|432256628|gb|ELL11949.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 65014]
gi|432262465|gb|ELL17704.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97020]
gi|432263904|gb|ELL19114.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3652]
gi|432269203|gb|ELL24365.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2007056]
gi|432269461|gb|ELL24619.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3642]
gi|432273178|gb|ELL28277.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2001212]
gi|432277928|gb|ELL32973.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63006]
Length = 336
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|254282686|ref|ZP_04957654.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
gi|219678889|gb|EED35238.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
Length = 311
Score = 283 bits (724), Expect = 4e-73, Method: Composition-based stats.
Identities = 131/238 (55%), Positives = 173/238 (72%), Gaps = 1/238 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR F R +TR + LYTEM TT A+L G+ L FN EHPIA Q+G + P++
Sbjct: 1 MDWTDRHCRYFWRLLTRRARLYTEMVTTGALLHGDVARHLQFNDCEHPIALQLGGSNPEE 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA A++ + WGYDE+NLNCGCPS+RVQNG FGA LM + LV DC+ AM D+ + +TV
Sbjct: 61 LASCARMAEDWGYDEVNLNCGCPSDRVQNGRFGACLMAEAELVRDCVAAMCDASALPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGID SY+ +RDFVGTV+S G R FIVHAR A+L+ L+PK+NR+IP L Y +VY
Sbjct: 121 KHRIGIDHQESYNELRDFVGTVASGGARVFIVHARKAWLQGLSPKENREIPPLNYPWVYR 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 255
LK+DFP L I++NGG+ + HL +DGVMLGR AY+NP+L+++ D + + P+
Sbjct: 181 LKQDFPHLTIVLNGGVTDIPACESHLGKVDGVMLGRAAYQNPWLLASVDQALFGDAPR 238
>gi|385850602|ref|YP_005897117.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M04-240196]
gi|325205425|gb|ADZ00878.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M04-240196]
Length = 336
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|421539547|ref|ZP_15985707.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
gi|402321192|gb|EJU56668.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
Length = 336
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|418287560|ref|ZP_12900144.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM233]
gi|418289820|ref|ZP_12902053.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM220]
gi|372202823|gb|EHP16590.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM220]
gi|372203638|gb|EHP17268.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM233]
Length = 336
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|421564557|ref|ZP_16010355.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
gi|402345825|gb|EJU80930.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
Length = 336
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|163803123|ref|ZP_02197007.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
gi|159173115|gb|EDP57947.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
Length = 318
Score = 283 bits (723), Expect = 4e-73, Method: Composition-based stats.
Identities = 135/245 (55%), Positives = 174/245 (71%), Gaps = 2/245 (0%)
Query: 15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE 74
+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L N EEHP+A Q+G +
Sbjct: 1 MAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAHNEEEHPLALQLGGSN 60
Query: 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 134
P LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++
Sbjct: 61 PADLATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVP 120
Query: 135 ITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193
+TVK RIGIDD +SY F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y
Sbjct: 121 VTVKTRIGIDDHDSYQFLTDFVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYP 180
Query: 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SN 252
Y LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L++ D + SN
Sbjct: 181 RAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLAFVDQELFGSN 240
Query: 253 LPQYK 257
P K
Sbjct: 241 APVKK 245
>gi|421566775|ref|ZP_16012516.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
gi|402344718|gb|EJU79851.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
Length = 336
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|387128873|ref|YP_006297478.1| coproporphyrinogen III oxidase-like protein [Methylophaga sp. JAM1]
gi|386275935|gb|AFI85833.1| coproporphyrinogen III oxidase-like protein [Methylophaga sp. JAM1]
Length = 386
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 200/350 (57%), Gaps = 38/350 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I EK Y++AL+ D+E LP++ R I TIFIGGGTPSL S D+L ++ LL +
Sbjct: 36 EIPEKAYIDALIRDLEQDLPLVWGRTIQTIFIGGGTPSLFSAEAYDHLFSALRALLPIRA 95
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ ITLEANP TFE +F Y +GINRLSIGIQSFN L LGR HD KQA A EIA
Sbjct: 96 DAEITLEANPGTFETARFTDYRAVGINRLSIGIQSFNGASLTALGRIHDGKQAIRAAEIA 155
Query: 762 KQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
Q F NFNLDL++ LP QT D+ AI P H+S Y LTIEPNT+F + PP +
Sbjct: 156 HQAGFENFNLDLMFGLPKQTAELARKDVETAIALEPTHISYYQLTIEPNTFFHQSPP-QL 214
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG--------N 872
P ++ Q L Y YE+SAY+K G +S+HNLNYW+FGDYLG
Sbjct: 215 PDDEPIDNWQIANQQRLAKAGYLQYEVSAYAKKGCQSRHNLNYWQFGDYLGIGAGAHGKL 274
Query: 873 SIAKSKKIEKKC----------------------------LIFEFMLNALRLKDGFSPNL 904
S A S+ IE+ + FEFMLNALRL DGF+ +L
Sbjct: 275 SSAASQSIERLVKQKQPQAYLDKVNTPQRIMKQEPVGINEIGFEFMLNALRLTDGFATSL 334
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F + G+ + I+ L AEK GL+ + K I+PT G+ +LN L ++FL
Sbjct: 335 FMQHCGLPLATIKKPLAEAEKRGLIDYSVKWIRPTELGQRYLNSLIELFL 384
>gi|87122404|ref|ZP_01078285.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
gi|86162379|gb|EAQ63663.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
Length = 349
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 176/249 (70%), Gaps = 2/249 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAF 68
R+ SIAPM++ T R+F R +T + LYTEM TT A+L N + L F EHPIA
Sbjct: 19 RRFSIAPMLDWTTSDYRVFARALTTETLLYTEMVTTGALLKGDNPERFLRFEDIEHPIAL 78
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G ++ LA+ AK+ +K+GYDE+NLN GCPS +VQ+ GAILM P V D +KAM+
Sbjct: 79 QLGGSDANALAQCAKLAEKFGYDEVNLNAGCPSYKVQHSLIGAILMAHPEKVKDAMKAMQ 138
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+ I +T+KHRIG+DD Y VRDF+G V++ G +TFIVHARNA L L+PKQNR+IP
Sbjct: 139 DACSIPVTLKHRIGLDDQQDYSIVRDFIGDVATTGTQTFIVHARNAILAGLSPKQNREIP 198
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY+FVY LKKDFP+LEIIINGGIKT E + HL ++DGVM+GREAY NP+++S D
Sbjct: 199 PLKYDFVYQLKKDFPDLEIIINGGIKTLDECEHHLKHLDGVMVGREAYNNPWILSQVDSR 258
Query: 249 YYSNLPQYK 257
+ Q +
Sbjct: 259 LFDKEDQVQ 267
>gi|343515823|ref|ZP_08752871.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
gi|342797458|gb|EGU33106.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
Length = 346
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 128/236 (54%), Positives = 170/236 (72%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N +EHP+ Q+G
Sbjct: 26 RFSVAPMLDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGDFLAYNEQEHPLVLQLG 85
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 86 GSNTSDLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 145
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 146 DIPVTVKTRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 205
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y LKKDF L I +NGG+KT +E+ HL ++DGVM+GREAY+NP++++ D
Sbjct: 206 DYPRAYQLKKDFAHLVIAVNGGVKTLQEVQEHLKHLDGVMVGREAYQNPYILAEVD 261
>gi|416190467|ref|ZP_11615716.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ES14902]
gi|421560509|ref|ZP_16006367.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM2657]
gi|254670181|emb|CBA05275.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha153]
gi|325138888|gb|EGC61438.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ES14902]
gi|402340059|gb|EJU75263.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM2657]
Length = 336
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|433536002|ref|ZP_20492520.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 77221]
gi|432276248|gb|ELL31309.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 77221]
Length = 336
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|407069817|ref|ZP_11100655.1| tRNA-dihydrouridine synthase A [Vibrio cyclitrophicus ZF14]
Length = 326
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +++ + LYTEM TT AIL K L++N +EHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYNEQEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++
Sbjct: 66 GSNPVDLAACAKLAGERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCVSAMKEVT 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I ITVK RIGIDD +SY+F+ FV TVS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPITVKTRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y+ Y +KKDF +L I +NGG+ T ++ HL ++DGVM+GREAY +PF+++ D
Sbjct: 186 DYDRAYQIKKDFSDLVIAVNGGVTTLEQTKEHLQHLDGVMIGREAYHSPFILAEVD 241
>gi|333907912|ref|YP_004481498.1| yjbN family TIM-barrel protein [Marinomonas posidonica IVIA-Po-181]
gi|333477918|gb|AEF54579.1| TIM-barrel protein, yjbN family [Marinomonas posidonica
IVIA-Po-181]
Length = 345
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/262 (52%), Positives = 181/262 (69%), Gaps = 8/262 (3%)
Query: 1 MNMINSKYN------KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GN 52
+N I++K + R+ S+APMM+ T R+F R +T+ + LYTEM T+ A+L N
Sbjct: 6 LNTIDAKSDNTSDTLDRRFSVAPMMDWTTSDYRVFARTLTKNTLLYTEMVTSGALLQGNN 65
Query: 53 KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI 112
L ++ EHPIA Q+G + K L + A + +K GYDE+NLN GCPS+RVQN GA
Sbjct: 66 PARFLHYDECEHPIALQLGGSNAKDLGQCAAMAEKCGYDEVNLNVGCPSDRVQNSLIGAC 125
Query: 113 LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172
LM P V D +KAM+DS I +T+KHRIG+D+ Y VRDFVG VS+ G +TFIVHAR
Sbjct: 126 LMAHPDKVKDAMKAMQDSCNIPVTLKHRIGLDEQQDYSVVRDFVGEVSTTGVKTFIVHAR 185
Query: 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLG 232
NA L+ L+PK+NR+IP LKY++V+ LK+DFP+LEIIINGGIKT +E HL +DGVM+G
Sbjct: 186 NAILQGLSPKENREIPPLKYHYVHQLKEDFPDLEIIINGGIKTIEECQAHLLKVDGVMIG 245
Query: 233 REAYKNPFLMSNFDLNYYSNLP 254
REAY NP+L+S D Y N P
Sbjct: 246 REAYHNPWLLSQVDQAIYGNAP 267
>gi|385323486|ref|YP_005877925.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 8013]
gi|421543744|ref|ZP_15989834.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|421545808|ref|ZP_15991867.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|421547875|ref|ZP_15993906.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2781]
gi|421552086|ref|ZP_15998066.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|421558404|ref|ZP_16004286.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
gi|261391873|emb|CAX49332.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 8013]
gi|402325204|gb|EJU60615.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|402326033|gb|EJU61439.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|402327217|gb|EJU62608.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2781]
gi|402332634|gb|EJU67958.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|402338224|gb|EJU73461.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
Length = 336
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|297565479|ref|YP_003684451.1| yjbN family TIM-barrel protein [Meiothermus silvanus DSM 9946]
gi|296849928|gb|ADH62943.1| TIM-barrel protein, yjbN family [Meiothermus silvanus DSM 9946]
Length = 345
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 173/241 (71%), Gaps = 1/241 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APM++ TDRH R R +R LYTEM T +AIL GN+ LDF+ EHP+A Q+
Sbjct: 9 RLSVAPMLDWTDRHFRYLVRLCSRGVRLYTEMVTDRAILHGNRPRLLDFDPSEHPVALQL 68
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA++A+I Q WGYDEINLN GCPS RVQ G FGA LM +P LV++C AMR++
Sbjct: 69 GGSDPALLAEAARIGQDWGYDEINLNLGCPSERVQGGGFGACLMKEPDLVAECFAAMREA 128
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V++ +T KHR+G+DD+ Y ++ FV ++S G FIVHAR A+L+ L+PK+NR+IP L
Sbjct: 129 VQLPVTAKHRLGVDDLEDYGYLARFVEKLASVGVEVFIVHARKAWLQGLSPKENREIPEL 188
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y +VY LK+DFP L ++NGG+KT E HL ++DGVMLGR Y++PF++ D ++
Sbjct: 189 RYGWVYRLKEDFPHLIFVLNGGVKTLDEAGAHLEHVDGVMLGRAVYEDPFVLEEADRRFF 248
Query: 251 S 251
Sbjct: 249 G 249
>gi|385338763|ref|YP_005892636.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
gi|319411177|emb|CBY91582.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
Length = 336
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|254805616|ref|YP_003083837.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha14]
gi|254669158|emb|CBA07852.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha14]
Length = 336
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|424031915|ref|ZP_17771339.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
gi|408876920|gb|EKM16025.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
Length = 315
Score = 282 bits (722), Expect = 5e-73, Method: Composition-based stats.
Identities = 133/242 (54%), Positives = 174/242 (71%), Gaps = 2/242 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPTD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++ +TV
Sbjct: 61 LATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 255
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 181 QLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAPV 240
Query: 256 YK 257
K
Sbjct: 241 KK 242
>gi|91794580|ref|YP_564231.1| tRNA-dihydrouridine synthase A [Shewanella denitrificans OS217]
gi|91716582|gb|ABE56508.1| TIM-barrel protein, yjbN family [Shewanella denitrificans OS217]
Length = 327
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 130/238 (54%), Positives = 174/238 (73%)
Query: 14 SIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDN 73
SIAPM++ TD+H R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G +
Sbjct: 7 SIAPMLDWTDKHYRYFARIMSTKALLYTEMVTTGAILHGRGDYLAYNTEEHPLALQLGGS 66
Query: 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 133
P LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I
Sbjct: 67 NPVDLAACAKLAFERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDI 126
Query: 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193
+TVK RIGID+ +SY+F+ F+ TV++ GC F +HAR A+L+ L+PK+NR+IP+L Y+
Sbjct: 127 PVTVKTRIGIDEQDSYEFLTKFIETVAAKGCDDFTIHARKAWLQGLSPKENREIPLLDYD 186
Query: 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
VY LK+DFP+L I INGGIKT E LHL +DGVM+GREAY+NP+L++ D Y
Sbjct: 187 RVYQLKRDFPKLNIGINGGIKTLAEAKLHLTQLDGVMVGREAYQNPYLLAEVDTQLYG 244
>gi|154251505|ref|YP_001412329.1| tRNA-dihydrouridine synthase A [Parvibaculum lavamentivorans DS-1]
gi|154155455|gb|ABS62672.1| TIM-barrel protein, yjbN family [Parvibaculum lavamentivorans DS-1]
Length = 335
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 131/261 (50%), Positives = 183/261 (70%), Gaps = 3/261 (1%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHP 65
K +KI+IAPMM+ TDRH R F R ITR S LYTEM TT AIL G ++ L F+ EHP
Sbjct: 2 KTRVKKIAIAPMMDWTDRHDRYFLRLITRRSLLYTEMVTTGAILHGPRERLLKFDLSEHP 61
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+G +EP LA+SA+I +GYDEINLN GCPS+RVQ+G FGA LM +P LV+ C++
Sbjct: 62 VAVQLGGSEPADLAESARIAADFGYDEINLNVGCPSDRVQSGRFGACLMREPDLVARCVE 121
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
AM+++V + +TVK RIG+D+ + + V AGC T IVHAR A+L+ L+PK+NR
Sbjct: 122 AMKNAVSVPVTVKCRIGVDEQEPEEALPAMAKAVRGAGCETLIVHARKAWLEGLSPKENR 181
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
+P L Y VY LK+ P++EIIINGGI T E + HL ++DGVMLGR AY++P++++
Sbjct: 182 DVPPLDYPLVYRLKQAMPDMEIIINGGIATLDEAEAHLAHVDGVMLGRAAYQHPYILAEA 241
Query: 246 DLNYYSNLPQYKIPTRIDIIN 266
D +Y + + +P+R +++
Sbjct: 242 DRRFYGD--GHDVPSRHEVLE 260
>gi|331006974|ref|ZP_08330216.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC1989]
gi|330419221|gb|EGG93645.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC1989]
Length = 310
Score = 282 bits (722), Expect = 6e-73, Method: Composition-based stats.
Identities = 127/248 (51%), Positives = 184/248 (74%), Gaps = 3/248 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK-KHCLDFNAEEHPIAFQVGDNEPK 76
MM+ +DRHCR R I+++S LYTEM TT A+L + LD+N EEHP+A Q+G ++
Sbjct: 1 MMDWSDRHCRYLWRLISQHSRLYTEMVTTGALLHREPARFLDYNPEEHPLALQLGGSDAG 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA+ A + ++WGY E+NLNCGCPS+RVQNG GA LM P V+D +AM+D V+I++T
Sbjct: 61 DLARCAILAEQWGYYEVNLNCGCPSDRVQNGMIGACLMAHPEKVADAYQAMQDKVDIEVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
+KHRIGIDD++ Y+ + +F+ +++ GC+TFIVHAR A+LK L+PK+NR++P L+Y FV+
Sbjct: 121 IKHRIGIDDMDDYEGMVNFIRPIAARGCQTFIVHARKAWLKGLSPKENREVPPLEYAFVH 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK++FPEL I+INGGIKT + +HL +DGVM+GREAY NP+L++ D + + + +
Sbjct: 181 RLKQEFPELTIVINGGIKTLDDTLMHLTKVDGVMVGREAYSNPYLLAEVDQHVFGD--SH 238
Query: 257 KIPTRIDI 264
IP+R I
Sbjct: 239 PIPSRTAI 246
>gi|33151604|ref|NP_872957.1| tRNA-dihydrouridine synthase A [Haemophilus ducreyi 35000HP]
gi|38604736|sp|Q7VNV2.1|DUSA_HAEDU RecName: Full=tRNA-dihydrouridine synthase A
gi|33147824|gb|AAP95346.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 323
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 183/264 (69%), Gaps = 2/264 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+++K+ + + ++APM++ T RHCR FHRQ ++ + LYTEM T AIL K L+++ E
Sbjct: 1 MHNKFYRGRFAVAPMLDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDLLEYDPAE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G ++P +LA AK++Q GY EINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 61 QPVALQLGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQNGMFGACLMANADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D V+I +T+KHRIGID ++SY F+ DF+ + + FIVHAR A+L L+PK+
Sbjct: 121 IKAMQDVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYS-QDFIVHARKAWLSGLSPKE 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP+L I INGGIKT EI HL +DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPQLNISINGGIKTIDEIKQHLTKVDGVMVGREAYQNPALLG 239
Query: 244 NFDLNYYSNLPQYKIPTRIDIINL 267
D + Q I RI + N+
Sbjct: 240 EIDQQLFDQ-NQPLITARIAVENM 262
>gi|91227265|ref|ZP_01261690.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
gi|91188659|gb|EAS74948.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
Length = 315
Score = 282 bits (722), Expect = 6e-73, Method: Composition-based stats.
Identities = 133/242 (54%), Positives = 174/242 (71%), Gaps = 2/242 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPAD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TV
Sbjct: 61 LATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 255
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 181 QLKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAPV 240
Query: 256 YK 257
K
Sbjct: 241 KK 242
>gi|15676263|ref|NP_273397.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis MC58]
gi|385852538|ref|YP_005899052.1| tRNA dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|416195227|ref|ZP_11617632.1| tRNA dihydrouridine synthase A [Neisseria meningitidis CU385]
gi|427827838|ref|ZP_18994861.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|433464325|ref|ZP_20421818.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM422]
gi|433487530|ref|ZP_20444708.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M13255]
gi|433489705|ref|ZP_20446843.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM418]
gi|433504344|ref|ZP_20461288.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9506]
gi|433506438|ref|ZP_20463356.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9757]
gi|433508537|ref|ZP_20465421.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 12888]
gi|433510601|ref|ZP_20467443.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 4119]
gi|7225569|gb|AAF40791.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984353|gb|EFV63327.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|325140997|gb|EGC63503.1| tRNA dihydrouridine synthase A [Neisseria meningitidis CU385]
gi|325199542|gb|ADY94997.1| tRNA dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|389604991|emb|CCA43916.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha522]
gi|432205743|gb|ELK61764.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM422]
gi|432225803|gb|ELK81542.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M13255]
gi|432230180|gb|ELK85858.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM418]
gi|432243241|gb|ELK98755.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9506]
gi|432244071|gb|ELK99572.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9757]
gi|432249561|gb|ELL04965.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 12888]
gi|432250177|gb|ELL05574.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 4119]
Length = 336
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R +S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RHLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V+I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|333374810|ref|ZP_08466644.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
gi|332974563|gb|EGK11483.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
Length = 357
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 184/258 (71%), Gaps = 5/258 (1%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
KR +S+APM++ TDRH R RQITR++WLYTEM AI+ G+ L N E+P+A
Sbjct: 26 KRTLSVAPMLDWTDRHYRHMARQITRHTWLYTEMINAGAIVYGDPDRFLQRNECENPVAL 85
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G +EP LA++A+ ++ YDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+
Sbjct: 86 QLGGSEPTLLAQAAQKAAQYSYDEINLNCGCPSPRVQKGAFGACLMLDVNLVADCLNAMQ 145
Query: 129 DSV-EIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRK 186
D+V I IT+KHRIGID Y + DFVG++ CRTFIVHARNA+L L+PK+NR+
Sbjct: 146 DAVPAIPITIKHRIGIDKQTEYQPLADFVGSLHDKTACRTFIVHARNAWLDGLSPKENRE 205
Query: 187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
IP L+Y+FVY LK++FP+LEIIINGG++T +I HL ++DGVM+GREAY NP++M ++D
Sbjct: 206 IPPLRYDFVYRLKQEFPDLEIIINGGVQTNTQIAEHLQHVDGVMMGREAYHNPYIMHDWD 265
Query: 247 LNYYSNLPQYKIPTRIDI 264
+Y PTR I
Sbjct: 266 TLFYGET--QPAPTREQI 281
>gi|330503878|ref|YP_004380747.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
gi|328918165|gb|AEB58996.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
Length = 312
Score = 282 bits (722), Expect = 6e-73, Method: Composition-based stats.
Identities = 129/230 (56%), Positives = 173/230 (75%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q+G + P+
Sbjct: 1 MMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQLGGSNPQ 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA K+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D+V I +T
Sbjct: 61 DLATCTKMAEEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMQDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y+
Sbjct: 121 VKHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREVPPLRYDVAA 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D
Sbjct: 181 QLKQDFPDLEIILNGGIKTIEECEQHLQSFDGVMLGREAYHNPYLLAQVD 230
>gi|344343484|ref|ZP_08774352.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
gi|343804907|gb|EGV22805.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
Length = 328
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 182/257 (70%), Gaps = 3/257 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++SIAPM++ TDRHCR F R I+R++ LYTEM TT A+L G+++ L F+ EHP+A Q
Sbjct: 7 RRLSIAPMLDWTDRHCRYFLRLISRHTLLYTEMVTTGALLHGDRERFLRFDPSEHPVALQ 66
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P +A A++ ++GYDEIN+N GCPS+RVQNG FGA LM +P +V+DC++AM+D
Sbjct: 67 LGGSDPADMASCARLGAEYGYDEININVGCPSDRVQNGRFGACLMAEPGVVADCVRAMKD 126
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V + +TVK RIGIDD +SY + DFVG AGC IVHAR A+L L+PK+NR IP
Sbjct: 127 AVAVPVTVKSRIGIDDRDSYGELVDFVGAQVEAGCDALIVHARKAWLSGLSPKENRDIPP 186
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ V LK+DFP L I +NGG++ + L +DGVM+GREAY NP++++ D
Sbjct: 187 LRYDVVLQLKRDFPALSISLNGGVQDLDQACALLETLDGVMIGREAYHNPWILAAADARI 246
Query: 250 YSNLPQYKIPTRIDIIN 266
+++ PTR +I
Sbjct: 247 FAD--PTPPPTRHQVIE 261
>gi|410863004|ref|YP_006978238.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii AltDE1]
gi|410820266|gb|AFV86883.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii AltDE1]
Length = 338
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 2/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
RK S+APM++ TDRHCR F R +++++ LYTEM TT AI+ K L +N EEHPIA Q+
Sbjct: 8 RKFSVAPMLDWTDRHCRYFLRLMSKHTLLYTEMVTTGAIIYGKGDYLGYNKEEHPIAVQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +AK A++ Q+ GYDE+N+N GCPS+RV+NG FGA LM +P +V+ C+KAM+ +
Sbjct: 68 GGSDPSDMAKCAELSQERGYDEVNINVGCPSDRVKNGSFGACLMAQPEVVASCVKAMQSA 127
Query: 131 VEIDITVKHRIGIDDIN-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V+I +TVK RIGIDD++ DF R F+ TV+ AGC TFIVHAR A+L+ L+PK+NR+IP
Sbjct: 128 VDIPVTVKCRIGIDDMDEDEDFTR-FIDTVADAGCDTFIVHARKAWLQGLSPKENREIPP 186
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y V+ LK+ PEL I INGGIKT E L +DGVM+GRE Y NPF+MS+ D +
Sbjct: 187 LNYPRVHRLKQARPELSISINGGIKTLAETQQQLESVDGVMVGREVYANPFIMSSVDKDI 246
Query: 250 YSN 252
+ +
Sbjct: 247 FGD 249
>gi|416519302|ref|ZP_11739838.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363558367|gb|EHL42559.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
Length = 316
Score = 282 bits (722), Expect = 6e-73, Method: Composition-based stats.
Identities = 133/233 (57%), Positives = 171/233 (73%), Gaps = 1/233 (0%)
Query: 15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE 74
IAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++
Sbjct: 1 IAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSD 60
Query: 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 134
P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I
Sbjct: 61 PAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIP 120
Query: 135 ITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYN 193
+TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y
Sbjct: 121 VTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYP 180
Query: 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 181 RVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 233
>gi|343511553|ref|ZP_08748712.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
gi|342797755|gb|EGU33394.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
Length = 326
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 169/236 (71%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
K SIAPM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N +EHP+ Q+G
Sbjct: 6 KFSIAPMLDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGDFLAYNEQEHPLVLQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V
Sbjct: 66 GSNTADLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y LKKDF L I +NGG+KT +E HL ++DGVM+GREAY+NP++++ D
Sbjct: 186 DYPRAYQLKKDFAHLVIAVNGGVKTLQEAQEHLKHLDGVMVGREAYQNPYILAEVD 241
>gi|33597533|ref|NP_885176.1| coproporphyrinogen III oxidase [Bordetella parapertussis 12822]
gi|33601931|ref|NP_889491.1| coproporphyrinogen III oxidase [Bordetella bronchiseptica RB50]
gi|412338083|ref|YP_006966838.1| porphyrin oxidoreductase [Bordetella bronchiseptica 253]
gi|427814441|ref|ZP_18981505.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica 1289]
gi|33573961|emb|CAE38279.1| putative porphyrin oxidoreductase [Bordetella parapertussis]
gi|33576369|emb|CAE33447.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica RB50]
gi|408767917|emb|CCJ52675.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica 253]
gi|410565441|emb|CCN22998.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica 1289]
Length = 406
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 208/350 (59%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E ++P + R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLL 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ RLS+GIQSF++ L+ LGR HD+ QA+ AI +
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSRLGRIHDAAQARAAIAM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q NLDL++ALP Q L + DL A+ + HLSLY LT+EPNT F KYPP +
Sbjct: 178 AQQAVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPP-EL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+ + L FEFMLNALRLK+G + +
Sbjct: 297 SFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFEFMLNALRLKEGVAASS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ++FL
Sbjct: 357 FGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLNDLQEMFL 406
>gi|387892809|ref|YP_006323106.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens A506]
gi|387160557|gb|AFJ55756.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens A506]
Length = 336
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 173/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R +++++ LYTEM TT AIL G+ + L N EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I +TVKHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP
Sbjct: 138 AVSIPVTVKHRIGINGRDSYAELCDFVGMVKDAGCTSFTVHARIAILEGLSPKENRDIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP LEI +NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDVAAQLKRDFPALEINLNGGIKTLEQCQAHLQTFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>gi|423105940|ref|ZP_17093641.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
gi|376379248|gb|EHS92002.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
Length = 313
Score = 282 bits (721), Expect = 8e-73, Method: Composition-based stats.
Identities = 133/230 (57%), Positives = 170/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TV
Sbjct: 61 LAHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D
Sbjct: 181 QLKRDFPHLTMAINGGIKSLEEAKQHLAHMDGVMVGREAYQNPGILASVD 230
>gi|375132152|ref|YP_004994253.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
gi|315181327|gb|ADT88241.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
Length = 319
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 127/233 (54%), Positives = 169/233 (72%), Gaps = 1/233 (0%)
Query: 15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE 74
+APM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G +
Sbjct: 1 MAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSN 60
Query: 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 134
P LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM+ V+I
Sbjct: 61 PVDLARCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKAVVDIP 120
Query: 135 ITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193
+TVK RIGIDD +SY+F+ FV VS GC F +HAR A+L L+PK+NR+IP L Y
Sbjct: 121 VTVKTRIGIDDQDSYEFLTHFVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYP 180
Query: 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y LK+DFP+L I +NGG+K+ E HL ++DGVM+GREAY++P+L++ D
Sbjct: 181 RAYQLKQDFPQLTIAVNGGVKSLAEAKEHLQHLDGVMIGREAYQSPYLLAEVD 233
>gi|113971575|ref|YP_735368.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-4]
gi|113886259|gb|ABI40311.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-4]
Length = 335
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 175/236 (74%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R SIAPM++LTDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+
Sbjct: 14 RTFSIAPMLDLTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQL 73
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P +LA+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+
Sbjct: 74 GGSNPAELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQV 133
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 134 VDIPVTVKTRIGIDEQDSYEFLTYFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y+ VY LK+D+P L I INGGI + ++ HL Y+DGVM+GREAY+NP++++ D
Sbjct: 194 DYDRVYQLKRDYPMLNISINGGITSLEQAKTHLQYLDGVMVGREAYQNPYILAQVD 249
>gi|416051235|ref|ZP_11577333.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993253|gb|EGY34627.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 311
Score = 281 bits (720), Expect = 9e-73, Method: Composition-based stats.
Identities = 129/229 (56%), Positives = 167/229 (72%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +
Sbjct: 1 MLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDLAEQPVALQLGGSDPAQ 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
L A++ ++ Y EINLN GCPS+RVQNG FGA LM LV++C++ M+++V I +TV
Sbjct: 61 LKHCAQLAEQRDYQEINLNVGCPSDRVQNGMFGACLMANAALVAECVQQMQEAVRIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
K RIGIDD +SYDF+ +F+ TV AGCR FIVHAR A+L L+PKQNR+IP L Y VY
Sbjct: 121 KTRIGIDDFDSYDFLCNFIETVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D
Sbjct: 181 LKRDFPHLLISINGGIKTLDEMQQHLQRVDGVMVGREAYQNPSLLGYID 229
>gi|440731707|ref|ZP_20911697.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
gi|440371128|gb|ELQ07985.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
Length = 339
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 119/256 (46%), Positives = 180/256 (70%), Gaps = 2/256 (0%)
Query: 4 INSKYNKR-KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNA 61
++++Y ++S+APMM+ TDRHCR+FHR + + LYTEM A+ LG++ L F+A
Sbjct: 10 LSARYAASLRLSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLGFDA 69
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
EHP+A Q+G ++P LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+
Sbjct: 70 VEHPLALQLGGSDPALLAQAARIGQGWGYDEINLNCGCPSDRVQAGRFGACLMREPALVA 129
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
DC+ M +V+I +TVK R+G+D + Y+ FV V++AGC F+VHARNA+L+ L+P
Sbjct: 130 DCVATMVQAVDIPVTVKCRLGVDQDDDYEVFLAFVDQVAAAGCGLFVVHARNAWLQGLSP 189
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR++P L+Y++ Y LK++ P+L++++NGG+ L+ +DGVMLGR AY +P++
Sbjct: 190 KENREVPPLRYDWAYRLKRERPQLQVVLNGGLADVDTARAQLDAVDGVMLGRAAYHDPYV 249
Query: 242 MSNFDLNYYSNLPQYK 257
+ D P+ +
Sbjct: 250 LHRLDAALTGATPRPR 265
>gi|427821104|ref|ZP_18988167.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica D445]
gi|410572104|emb|CCN20365.1| putative porphyrin oxidoreductase [Bordetella bronchiseptica D445]
Length = 406
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 207/350 (59%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E ++P + R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLL 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ RLS+GIQSF++ L+ LGR HD+ QA+ AI +
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSKLGRIHDAAQARAAIAM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q NLDL++ALP Q L + DL + + HLSLY LT+EPNT F KYPP +
Sbjct: 178 AQQAVERVNLDLMFALPGQELEQCRADLRQVLAFGTEHLSLYHLTLEPNTVFAKYPP-EL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+ + L FEFMLNALRLKDG + +
Sbjct: 297 SFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFEFMLNALRLKDGVAASS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ++FL
Sbjct: 357 FGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLNDLQEMFL 406
>gi|291086669|ref|ZP_06356403.2| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
gi|291067402|gb|EFE05511.1| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
Length = 313
Score = 281 bits (720), Expect = 1e-72, Method: Composition-based stats.
Identities = 129/235 (54%), Positives = 175/235 (74%), Gaps = 1/235 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIVHGKGDYLAYSEEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TV
Sbjct: 61 LAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD++SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDLDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYARVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D ++
Sbjct: 181 QLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFA 235
>gi|385327705|ref|YP_005882008.1| yjbN; tRNA-dihydrouridine synthase A [Neisseria meningitidis
alpha710]
gi|416186449|ref|ZP_11613729.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M0579]
gi|308388557|gb|ADO30877.1| yjbN; tRNA-dihydrouridine synthase A [Neisseria meningitidis
alpha710]
gi|325136923|gb|EGC59520.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M0579]
Length = 336
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 177/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R +S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RHLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|410619800|ref|ZP_11330691.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
gi|410160578|dbj|GAC34829.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
Length = 345
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 176/242 (72%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R IS+APM++ TD+HCR F R+I++++ LYTEM TT AI+ K L +N EHP+A Q+
Sbjct: 10 RTISVAPMLDWTDKHCRYFLRKISKHALLYTEMVTTGAIIFGKGDYLAYNDAEHPVALQL 69
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI+AM+
Sbjct: 70 GGSDPVDMARCAVLAQERGYDEVNINVGCPSDRVQNGRFGACLMAEPSTVAKCIEAMQKE 129
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGIDD++ Y + DF+ V+ +GC F VHAR A+LK L+PK+NR IP L
Sbjct: 130 VDIPVTVKSRIGIDDMDEYKDLTDFISVVADSGCDIFTVHARKAWLKGLSPKENRDIPPL 189
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y+ VY LK +FP+L I INGG+KT + +HL +DGVM+GRE Y NP+++++ D +Y
Sbjct: 190 MYDRVYALKDEFPQLNISINGGVKTLDDTAVHLEKLDGVMIGREVYSNPYILADVDRRFY 249
Query: 251 SN 252
+
Sbjct: 250 QD 251
>gi|442319612|ref|YP_007359633.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
gi|441487254|gb|AGC43949.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
Length = 332
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+ +APMM+ TDRHCR FHRQI++++ LYTEM TT A+L G+++ L + EHP+A Q+G
Sbjct: 9 LCVAPMMDWTDRHCRYFHRQISQHTLLYTEMLTTGAVLHGDRERLLGYEPAEHPVAIQLG 68
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP+ LA+SA+I + WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMR +V
Sbjct: 69 GSEPEALAESARIAEAWGYDEVNLNVGCPSDRVQSGRFGACLMAEPELVARLVAAMRAAV 128
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVK RI ID++ + + FV +++ GC FIVHAR A+L+ L+PK+NR +P L+
Sbjct: 129 RIPVTVKSRIAIDELEEWPTLERFVRLIAAEGCTRFIVHARKAWLQGLSPKENRDVPPLR 188
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y V+ LK++ P L+I INGGIKT L +DGVM+GR Y+NP+L++ D ++
Sbjct: 189 YELVHQLKQELPHLDISINGGIKTLDAAAEQLTKVDGVMIGRAVYENPYLLAEADRRFFG 248
>gi|262393119|ref|YP_003284973.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
gi|262336713|gb|ACY50508.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
Length = 315
Score = 281 bits (720), Expect = 1e-72, Method: Composition-based stats.
Identities = 132/242 (54%), Positives = 175/242 (72%), Gaps = 2/242 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPED 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LAK AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TV
Sbjct: 61 LAKCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKGVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 255
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 181 QLKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAPV 240
Query: 256 YK 257
K
Sbjct: 241 KK 242
>gi|24375400|ref|NP_719443.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
gi|38604868|sp|Q8EAJ0.1|DUSA_SHEON RecName: Full=tRNA-dihydrouridine synthase A
gi|24350234|gb|AAN56887.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
Length = 335
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 179/245 (73%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N+ +SK R SIAPM++ TDRH R F R ++ + LYTEM TT AIL + L +N
Sbjct: 5 NINDSKNLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQ 64
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
EEHP+A Q+G + P +LA+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+
Sbjct: 65 EEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVA 124
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
+C+ AM+ V+I +TVK RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+P
Sbjct: 125 ECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y+ VY LK+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++
Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYM 244
Query: 242 MSNFD 246
++ D
Sbjct: 245 LAQVD 249
>gi|121635516|ref|YP_975761.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis FAM18]
gi|385340718|ref|YP_005894590.1| tRNA dihydrouridine synthase A [Neisseria meningitidis G2136]
gi|416176601|ref|ZP_11609712.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M6190]
gi|416200628|ref|ZP_11619688.1| tRNA dihydrouridine synthase A [Neisseria meningitidis 961-5945]
gi|416211980|ref|ZP_11621617.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240013]
gi|433466452|ref|ZP_20423914.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 87255]
gi|433491850|ref|ZP_20448950.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM586]
gi|433493933|ref|ZP_20451008.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM762]
gi|433496113|ref|ZP_20453161.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7089]
gi|433498198|ref|ZP_20455213.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7124]
gi|433500132|ref|ZP_20457122.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM174]
gi|433502381|ref|ZP_20459351.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM126]
gi|120867222|emb|CAM10991.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|325132903|gb|EGC55580.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M6190]
gi|325143034|gb|EGC65386.1| tRNA dihydrouridine synthase A [Neisseria meningitidis 961-5945]
gi|325145143|gb|EGC67425.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240013]
gi|325198962|gb|ADY94418.1| tRNA dihydrouridine synthase A [Neisseria meningitidis G2136]
gi|432204841|gb|ELK60875.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 87255]
gi|432230251|gb|ELK85928.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM586]
gi|432231724|gb|ELK87382.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM762]
gi|432236479|gb|ELK92086.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7124]
gi|432237219|gb|ELK92817.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7089]
gi|432237319|gb|ELK92914.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM174]
gi|432243055|gb|ELK98570.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM126]
Length = 336
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 177/244 (72%), Gaps = 2/244 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R +S+APM++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q
Sbjct: 11 RHLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQ 70
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D
Sbjct: 71 LGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQD 130
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
+V I +TVKHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P
Sbjct: 131 AVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVP 190
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
LKY++VY LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D
Sbjct: 191 PLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRL 250
Query: 249 YYSN 252
+Y +
Sbjct: 251 FYGD 254
>gi|343505067|ref|ZP_08742715.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
gi|342809053|gb|EGU44183.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
Length = 326
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 169/236 (71%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
K SIAPM++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N +EHP+ Q+G
Sbjct: 6 KFSIAPMLDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGDFLAYNEQEHPLVLQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V
Sbjct: 66 GSNTADLATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKYVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV TVS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDHDSYEFLTDFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y LKKDF L I +NGG+KT +E HL ++DGVM+GREAY+NP++++ D
Sbjct: 186 DYPRAYQLKKDFAHLVIAVNGGVKTLQETQEHLKHLDGVMVGREAYQNPYILAEVD 241
>gi|429743706|ref|ZP_19277250.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 020 str.
F0370]
gi|429164825|gb|EKY06925.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 020 str.
F0370]
Length = 357
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/254 (52%), Positives = 182/254 (71%), Gaps = 3/254 (1%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEE 63
+S R++S+APM++ TDRH R RQI+R++WLYTEM A++ G+ + L + E
Sbjct: 26 SSYQGTRRLSVAPMLDWTDRHYRYMARQISRHTWLYTEMINAGAVVYGDPERFLLKDDCE 85
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
+P+A Q+G +EP LA++A +GYDEINLNCGCPS RVQ G FGA LM + LV+DC
Sbjct: 86 NPVALQLGGSEPAALAQAAAKAAAYGYDEINLNCGCPSPRVQKGAFGACLMNEVALVADC 145
Query: 124 IKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNP 181
+ AM+D+ + +TVKHRIG+D Y V DFVGT++ C+TF+VHARNA+L L+P
Sbjct: 146 LNAMQDAAPDCAVTVKHRIGVDRQTEYQIVADFVGTLAEKTACKTFVVHARNAWLNGLSP 205
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR++P LKY +VY LK++FPELEIIINGGIKT EI HL ++DGVM+GRE Y NP +
Sbjct: 206 KENREVPPLKYEYVYRLKREFPELEIIINGGIKTNGEIAAHLQHVDGVMVGRECYHNPMI 265
Query: 242 MSNFDLNYYSNLPQ 255
M ++D +Y + Q
Sbjct: 266 MRDWDRLFYGDKRQ 279
>gi|359435578|ref|ZP_09225772.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
gi|357917733|dbj|GAA62021.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
Length = 313
Score = 281 bits (718), Expect = 1e-72, Method: Composition-based stats.
Identities = 126/238 (52%), Positives = 175/238 (73%)
Query: 15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE 74
+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++
Sbjct: 1 MAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSD 60
Query: 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 134
PK LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V I
Sbjct: 61 PKALAQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKNEVNIP 120
Query: 135 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 194
+TVK RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y
Sbjct: 121 VTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPR 180
Query: 195 VYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
VY LKKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y +
Sbjct: 181 VYQLKKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGD 238
>gi|424811155|ref|ZP_18236471.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
gi|342321786|gb|EGU17587.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
Length = 316
Score = 281 bits (718), Expect = 2e-72, Method: Composition-based stats.
Identities = 127/230 (55%), Positives = 167/230 (72%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TV
Sbjct: 61 LAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D
Sbjct: 181 QIKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVD 230
>gi|33592684|ref|NP_880328.1| coproporphyrinogen III oxidase [Bordetella pertussis Tohama I]
gi|384203985|ref|YP_005589724.1| coproporphyrinogen III oxidase [Bordetella pertussis CS]
gi|33572330|emb|CAE41884.1| putative porphyrin oxidoreductase [Bordetella pertussis Tohama I]
gi|332382099|gb|AEE66946.1| coproporphyrinogen III oxidase [Bordetella pertussis CS]
Length = 406
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 207/350 (59%), Gaps = 37/350 (10%)
Query: 641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700
G I E+ YL+AL D+E ++P + R++ ++FIGGGTPSL+S GLD LL ++ L
Sbjct: 58 GEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLL 117
Query: 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
+ IT+EANP T E +F Y+ G+ RLS+GIQSF++ L+ LGR HD+ QA+ AI +
Sbjct: 118 PDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSRLGRIHDAAQARAAIAM 177
Query: 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
A+Q NLDL++ALP Q L + DL A+ + HLSLY LT+EPNT F KYPP +
Sbjct: 178 AQQTVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPP-EL 236
Query: 821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL---------- 870
P +D +A MQD + L YE+SAY++ G +HNLNYW+FGDYL
Sbjct: 237 PDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKL 296
Query: 871 --------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
G+ +A+S+ + L FEFMLNALRLK+G +
Sbjct: 297 SFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFEFMLNALRLKEGVAAPS 356
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERTG+++ I +L+ A + GLL + ++ T+ G FLNDLQ++FL
Sbjct: 357 FGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLNDLQEMFL 406
>gi|117919170|ref|YP_868362.1| tRNA-dihydrouridine synthase A [Shewanella sp. ANA-3]
gi|117611502|gb|ABK46956.1| TIM-barrel protein, yjbN family [Shewanella sp. ANA-3]
Length = 334
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 125/236 (52%), Positives = 175/236 (74%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R SIAPM++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+
Sbjct: 14 RTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQL 73
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P +LA+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ +
Sbjct: 74 GGSNPAELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQA 133
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +TVK RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L
Sbjct: 134 VDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y+ VY LK+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D
Sbjct: 194 DYDRVYQLKRDYPTLNISINGGITSLEQAKTHLQHLDGVMVGREAYQNPYILAQVD 249
>gi|291296460|ref|YP_003507858.1| YjbN family TIM-barrel protein [Meiothermus ruber DSM 1279]
gi|290471419|gb|ADD28838.1| TIM-barrel protein, yjbN family [Meiothermus ruber DSM 1279]
Length = 339
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 198/304 (65%), Gaps = 11/304 (3%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APM++ TDRH R R I+R LYTEM Q+IL GN+ LDF+ EEHP+A Q+
Sbjct: 10 RLSVAPMLDWTDRHFRYLVRLISRRVRLYTEMVVDQSILLGNRPKLLDFSPEEHPVALQL 69
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G + P+KLA++A+I + WGYDEINLN GCPS RVQ G FGA LM +P LV++ + AMR +
Sbjct: 70 GGSVPEKLAEAARIGEAWGYDEINLNLGCPSERVQGGGFGACLMLEPDLVAESMAAMRQA 129
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V+I +T KHR+G+D++ Y ++ FV ++ G FIVHAR A+LK L+P +NR IP L
Sbjct: 130 VKIPVTAKHRLGVDEVEDYRYLARFVEKLAGVGVGVFIVHARKAYLKGLSPAENRTIPPL 189
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
+Y++VY LK+DFP L I++NGG++T +E+ HL +DGVMLGR Y++PF++ D +
Sbjct: 190 RYDWVYRLKQDFPHLTIVLNGGVRTLEEVQAHLAKVDGVMLGRAVYEDPFVLEPADRRLF 249
Query: 251 SNLPQYKIPTRIDIINLD---SENRENEGDIILSSDFVTPNAINFMSKYARG-LICMTLT 306
+ TR+++ +E + +G + + + + +N RG L L+
Sbjct: 250 G---EAHATTRLEVAQAMLRYAEAQLEQGTPLWA---MARHMLNLFKGQPRGRLWRRVLS 303
Query: 307 EKHC 310
E+ C
Sbjct: 304 ERAC 307
>gi|381401033|ref|ZP_09925951.1| coproporphyrinogen III oxidase [Kingella kingae PYKK081]
gi|380833958|gb|EIC13808.1| coproporphyrinogen III oxidase [Kingella kingae PYKK081]
Length = 386
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 205/349 (58%), Gaps = 36/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+DE Y++ALL D++ LP R I TIFIGGGTPS+ S +D LL I+ L+
Sbjct: 38 TLDENAYIQALLTDLQSELPCFWGRPIDTIFIGGGTPSVFSAKAIDQLLSGIRALVKLNP 97
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
ITLEANPSTFEI+KF + GINRLSIG+QSF++ L LGR H++ +AK AIE+A
Sbjct: 98 EAEITLEANPSTFEIDKFQGFKDAGINRLSIGVQSFDDAKLKTLGRIHNAHEAKNAIEVA 157
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
Q F N+DL+YALP+QT+ D+ AI + H+S Y LT+EPNT F PP +P
Sbjct: 158 TQIFERVNIDLMYALPHQTVQAACDDIRTAIAFGTTHISAYQLTLEPNTPFGHAPPQGLP 217
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKT-GYESQHNLNYWKFGDYLG--------- 871
+D ++D I + L + YE SA++K+ +++HN+NYW+FGDY+G
Sbjct: 218 EDDNAQDIEDAIHAELAQAGFVQYETSAFAKSPNQQARHNVNYWQFGDYIGIGAGAHGKL 277
Query: 872 ---NSIAKSKK------------------IEKKC-----LIFEFMLNALRLKDGFSPNLF 905
+ I ++ + IE+K L FEFM+NALRL DG F
Sbjct: 278 SHHDRIERTTRKRHPSDYLLAMQTNPHDAIERKMVAPQDLPFEFMMNALRLVDGVPSAYF 337
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+++ I ++K A++ GLL N +PT GR FLNDL +IFL
Sbjct: 338 GERTGVSVAKISQQIKIAQQRGLLDSNPMFFRPTDLGRRFLNDLIEIFL 386
>gi|334131104|ref|ZP_08504870.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Methyloversatilis universalis FAM5]
gi|333443734|gb|EGK71695.1| Putative oxygen-independent coproporphyrinogen III oxidase
[Methyloversatilis universalis FAM5]
Length = 409
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 203/348 (58%), Gaps = 35/348 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
I E Y++AL+ D+E SLP I R++ TIF GGGTPSL++ LD LL ++ +
Sbjct: 63 GIPEAAYIDALIADLESSLPDIWGRRVQTIFFGGGTPSLMTPEALDRLLTAVRARVNLSP 122
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
ITLEANP T E ++F + G+NRLSIG+QSF+++ L LGR HD+++A+ AIE+A
Sbjct: 123 EAEITLEANPGTVEADRFKGFRDAGVNRLSIGVQSFDDRQLAALGRIHDTREARRAIELA 182
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ F N+DL+YALP QTL+E + DL+ AI HLS Y LT+EPNT F PP +P
Sbjct: 183 LRTFERVNIDLMYALPQQTLAEALTDLDTAIATGVSHLSCYHLTLEPNTPFAAQPP-ELP 241
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL----------- 870
+D +A MQ+ I + L + +YE SA++K G + HN+NYW+FGDYL
Sbjct: 242 DDDVSADMQEAIEARLAGAGFVHYETSAFAKPGQQCLHNMNYWQFGDYLGIGAGAHGKLS 301
Query: 871 -----------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFE 907
G+ + + + L FEFM+NA RL DGF +LF
Sbjct: 302 FHDRVRRDMRHKHPNAYLEGAARGDFVQDMRAVGVDELPFEFMMNAARLNDGFHIDLFAR 361
Query: 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955
TG+ + + +L A + GLL+ ++ +KPT GR FLN+L Q FL+
Sbjct: 362 HTGLTLDRLMPRLLEAREAGLLELDSGRVKPTLQGRRFLNELLQRFLD 409
>gi|428223727|ref|YP_007107824.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
gi|427983628|gb|AFY64772.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
Length = 344
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/250 (52%), Positives = 179/250 (71%), Gaps = 3/250 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+SIAPMM+ TDRH R F RQITR + LYTEM T+ AI+ G++ H L F+ EE P++ QVG
Sbjct: 19 LSIAPMMDRTDRHFRYFLRQITRCTLLYTEMVTSAAIIHGDRDHLLGFSPEEKPLSLQVG 78
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA+ A+I + +GYDEINLN GCPS+RVQ+G FGA LM +P V++ + AM+
Sbjct: 79 GDDPAQLAQCARIAEDFGYDEINLNVGCPSDRVQSGNFGACLMAQPERVAEAVAAMQAVT 138
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
+ +TVKHRIGIDD + Y+ + FV TV+SAGCR F VHAR A+L+ L+PK+NR +P L+
Sbjct: 139 RLPVTVKHRIGIDDRDRYEDMTAFVETVASAGCRHFTVHARKAWLQGLSPKENRDVPPLR 198
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y+ VY LK+DFP L I INGGI T ++ HL +D VM+GR AY +PFL + D ++Y
Sbjct: 199 YDDVYRLKQDFPHLFIEINGGITTLEQARDHLQRVDAVMIGRAAYDHPFLFATVDRDFYG 258
Query: 252 NLPQYKIPTR 261
+ PTR
Sbjct: 259 Q--AVEPPTR 266
>gi|418021051|ref|ZP_12660210.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
gi|347603596|gb|EGY28402.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
Length = 311
Score = 280 bits (717), Expect = 2e-72, Method: Composition-based stats.
Identities = 130/249 (52%), Positives = 180/249 (72%), Gaps = 3/249 (1%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LY+EM TT AI+ K L ++ ++HP+ Q+G ++PK
Sbjct: 1 MLDWTDRHCRYFHRLLTKQTLLYSEMVTTGAIIHGKADYLAYSEQDHPVVLQLGGSDPKT 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM D+V I +TV
Sbjct: 61 LADCAKLGQQRGYNEINLNIGCPSDRVQNGRFGACLMGEADLVADCIKAMNDAVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGID +SY+F+ DFV T+++ GC FI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 121 KTRIGIDSHDSYEFLCDFVDTIANKGGCHIFIIHARKAWLSGLSPKENREVPPLNYPRVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 256
LK+DFP+L I+INGGI T ++ HL Y+DGVM+GREAY+NP +++ D + PQ
Sbjct: 181 QLKRDFPQLTIVINGGITTLEDAAYHLKYVDGVMIGREAYQNPAILAEVDRKLFD--PQA 238
Query: 257 KIPTRIDII 265
I ++ +I
Sbjct: 239 AITDKVAVI 247
>gi|444920303|ref|ZP_21240146.1| tRNA-dihydrouridine synthase A [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508622|gb|ELV08791.1| tRNA-dihydrouridine synthase A [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 325
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 177/242 (73%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ S+APM+N TDRHCR F+R +++ + LYTEM TT AIL G+ L FNA+E PIA Q+
Sbjct: 6 RFSVAPMLNWTDRHCRYFYRLMSKQALLYTEMVTTGAILHGDMDMHLRFNAKESPIALQL 65
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++PK L +AKI + +GY EINLNCGCPS+RVQ G FGA LMT+P LV++C AM+ +
Sbjct: 66 GGSDPKDLQTAAKIAEDYGYTEINLNCGCPSDRVQKGRFGACLMTEPELVAECFDAMQSA 125
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V I +T+K+RIGID + Y FV F+ VS AGC+TF VHAR A+L L+PK+NR+IP L
Sbjct: 126 VNIPVTIKNRIGIDHQDDYAFVHRFIDVVSQAGCKTFTVHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y+ VY LK DFPEL +I+NGGI++ ++ +N +DGVMLGR Y +PFLM+ D Y+
Sbjct: 186 DYDRVYQLKHDFPELMLILNGGIQSPEQGLSVMNNLDGVMLGRAVYHSPFLMNEVDHLYF 245
Query: 251 SN 252
+
Sbjct: 246 GD 247
>gi|332142739|ref|YP_004428477.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|332142839|ref|YP_004428577.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552761|gb|AEA99479.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552861|gb|AEA99579.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
Length = 348
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 180/243 (74%), Gaps = 2/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
R+ S+APM++ TDRHCR F R +++++ LYTEM TT AI+ K L +N EEHPIA Q+
Sbjct: 18 RRFSVAPMLDWTDRHCRYFLRLMSKHTLLYTEMVTTGAIIYGKGDYLGYNKEEHPIAVQL 77
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +AK A++ Q+ GYDE+N+N GCPS+RV+NG FGA LM +P +V++C+KAM+ +
Sbjct: 78 GGSDPSDMAKCAELSQERGYDEVNINVGCPSDRVKNGSFGACLMAQPEVVANCVKAMQSA 137
Query: 131 VEIDITVKHRIGIDDIN-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V+I +TVK RIGIDD++ DF R F+ TV+ AGC TFIVHAR A+L+ L+PK+NR+IP
Sbjct: 138 VDIPVTVKCRIGIDDMDEDEDFAR-FIDTVADAGCDTFIVHARKAWLQGLSPKENREIPP 196
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y V+ LK+ PEL I INGGIKT E L +DGVM+GRE Y NP++MS+ D +
Sbjct: 197 LNYPRVHRLKQARPELSISINGGIKTLAETQQQLESVDGVMVGREVYANPYIMSSVDKDI 256
Query: 250 YSN 252
+ +
Sbjct: 257 FGD 259
>gi|156932320|ref|YP_001436236.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ATCC BAA-894]
gi|156530574|gb|ABU75400.1| hypothetical protein ESA_00095 [Cronobacter sakazakii ATCC BAA-894]
Length = 313
Score = 280 bits (716), Expect = 3e-72, Method: Composition-based stats.
Identities = 132/230 (57%), Positives = 172/230 (74%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TV
Sbjct: 61 LAHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 121 KTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVH 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D
Sbjct: 181 QLKRDFPKLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVD 230
>gi|395444421|ref|YP_006384674.1| tRNA-dihydrouridine synthase A [Pseudomonas putida ND6]
gi|388558418|gb|AFK67559.1| tRNA-dihydrouridine synthase A [Pseudomonas putida ND6]
Length = 312
Score = 280 bits (716), Expect = 3e-72, Method: Composition-based stats.
Identities = 130/236 (55%), Positives = 168/236 (71%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 1 MMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +T
Sbjct: 61 DLAACARLAEETGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 121 VKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAA 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + +
Sbjct: 181 QLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGS 236
>gi|407701359|ref|YP_006826146.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250506|gb|AFT79691.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Black
Sea 11']
Length = 350
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 179/243 (73%), Gaps = 2/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
RK S+APM++ TDRHCR F R +++++ LYTEM TT AI+ K L +N EEHP+A Q+
Sbjct: 20 RKFSVAPMLDWTDRHCRYFLRLMSKHTLLYTEMVTTGAIIYGKGDYLGYNQEEHPVAVQL 79
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P +AK A++ Q GYDE+N+N GCPS+RV+NG FGA LM +P +V++C+KAM+ +
Sbjct: 80 GGSDPSDMAKCAELSQARGYDEVNINVGCPSDRVKNGSFGACLMAQPEVVANCVKAMQSA 139
Query: 131 VEIDITVKHRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V+I +TVK RIGIDD++ DF R F+ TV+ AGC TFIVHAR A+L+ L+PK+NR+IP
Sbjct: 140 VDIPVTVKCRIGIDDMDEDEDFAR-FIDTVADAGCDTFIVHARKAWLQGLSPKENREIPP 198
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y V+ LK+ PEL I INGG+KT +E L ++DGVM+GRE Y NP++M+ D
Sbjct: 199 LNYPRVHRLKQARPELSISINGGVKTLEETQQQLEFVDGVMVGREVYANPYIMATVDKEI 258
Query: 250 YSN 252
+ +
Sbjct: 259 FGD 261
>gi|386826391|ref|ZP_10113498.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
gi|386427275|gb|EIJ41103.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
Length = 332
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 127/257 (49%), Positives = 188/257 (73%), Gaps = 3/257 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R I++APM++ TDRH R F R ++ LY+EM TT AI+ G++ L F+ EHP+A Q
Sbjct: 4 RLIAVAPMLDWTDRHDRYFLRLLSPSVLLYSEMVTTGAIIHGDRDRFLRFHPSEHPVALQ 63
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P+ LA A+I + +GY E+NLN GCPS+RVQ+G FGA LM P LV+DC+ M+
Sbjct: 64 LGGSDPQALADCARIAKDYGYAEVNLNVGCPSDRVQSGQFGACLMATPALVADCVATMKQ 123
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V I ITVK RIGID+++SY+ + F+ T++ AGC TFI+HAR A+L+ L+PK+NR+IP
Sbjct: 124 AVNIPITVKSRIGIDELDSYEHLCHFIQTIAQAGCDTFIIHARKAWLQGLSPKENREIPP 183
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y+ V+ +K DFP L IIINGG+KT +++ L +DGVM+GREAY+NP+L+++ + ++
Sbjct: 184 LCYDVVHQIKTDFPHLTIIINGGLKTIADVEQQLLKVDGVMIGREAYQNPYLLADLEQHF 243
Query: 250 YSNLPQYKIPTRIDIIN 266
++ P Y+ PTR I+
Sbjct: 244 FN--PNYQKPTRQAIVE 258
>gi|422660617|ref|ZP_16723026.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331019219|gb|EGH99275.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 339
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 180/254 (70%), Gaps = 2/254 (0%)
Query: 2 NMINSKYN-KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDF 59
N+ NS ++ R+ S+APMM+ TD HCR F R ++ + LYTEM TT A+L G+++ L
Sbjct: 11 NIENSAFSLSRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRH 70
Query: 60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
+ EHP+A Q+G + LA A++ + GYDE+NLN GCPS+RVQN GA LM P L
Sbjct: 71 DEAEHPLALQLGGSTAADLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPPL 130
Query: 120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 179
V+DC+KAMRD+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L
Sbjct: 131 VADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGL 190
Query: 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239
+PK+NR IP L+Y+ V LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP
Sbjct: 191 SPKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNP 250
Query: 240 FLMSNFDLNYYSNL 253
+L++ D + ++
Sbjct: 251 YLLAQVDQQLFGSV 264
>gi|333375505|ref|ZP_08467313.1| oxygen-independent coproporphyrinogen III oxidase [Kingella kingae
ATCC 23330]
gi|332970354|gb|EGK09346.1| oxygen-independent coproporphyrinogen III oxidase [Kingella kingae
ATCC 23330]
Length = 386
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 205/349 (58%), Gaps = 36/349 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+DE Y++ALL D++ LP R I TIFIGGGTPS+ S +D LL I+ L+
Sbjct: 38 TLDENAYIQALLTDLQSELPYFWGRPIDTIFIGGGTPSVFSAKAIDQLLSGIRALVKLNP 97
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
ITLEANPSTFEI+KF + GINRLSIG+QSF++ L LGR H++ +AK AIE+A
Sbjct: 98 ETEITLEANPSTFEIDKFQGFKDAGINRLSIGVQSFDDAKLKTLGRIHNAHEAKNAIEVA 157
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
Q F N+DL+YALP+QT+ D+ AI + H+S Y LT+EPNT F PP +P
Sbjct: 158 TQIFERVNIDLMYALPHQTVQAACDDIRTAIAFGTTHISAYQLTLEPNTPFGHTPPQGLP 217
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKT-GYESQHNLNYWKFGDYLG--------- 871
+D ++D I + L + YE SA++K+ +++HN+NYW+FGDY+G
Sbjct: 218 EDDNAQDIEDAIHAELAQAGFVQYETSAFAKSPNQQARHNVNYWQFGDYIGIGAGAHGKL 277
Query: 872 ---NSIAKSKK------------------IEKKC-----LIFEFMLNALRLKDGFSPNLF 905
+ I ++ + IE+K L FEFM+NALRL DG F
Sbjct: 278 SHHDRIERTTRKRHPSDYLLAMQTNPHDAIERKMVAPQDLPFEFMMNALRLVDGVPSAYF 337
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
ERTG+++ I ++K A++ GLL N +PT GR FLNDL +IFL
Sbjct: 338 GERTGVSVAKISQQIKIAQQRGLLDSNPMFFRPTDLGRRFLNDLIEIFL 386
>gi|417823509|ref|ZP_12470103.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
gi|340048480|gb|EGR09400.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
Length = 316
Score = 280 bits (715), Expect = 3e-72, Method: Composition-based stats.
Identities = 126/230 (54%), Positives = 168/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TV
Sbjct: 61 LAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 181 QIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 230
>gi|262401531|ref|ZP_06078098.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
gi|262352246|gb|EEZ01375.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
Length = 316
Score = 280 bits (715), Expect = 3e-72, Method: Composition-based stats.
Identities = 126/230 (54%), Positives = 168/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TV
Sbjct: 61 LAHCAKLAQDRGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 121 KTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+K+DFP L I +NGG+KT +E LHL ++DGVM+GREAY++P+L++ D
Sbjct: 181 QIKRDFPHLTIAVNGGVKTLEEAKLHLQHLDGVMIGREAYQSPYLLAEVD 230
>gi|418056438|ref|ZP_12694491.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
gi|353209657|gb|EHB75060.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
Length = 336
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 180/256 (70%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
+ IAPMM+ TDRHCR+FHR +T+++ LYTEM T A++ GN+ L F+ EHPIA Q+
Sbjct: 8 RFCIAPMMDWTDRHCRVFHRHLTKHALLYTEMVTADAVIHGNRARLLGFSDVEHPIALQL 67
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP KLA++A+I GY+EINLN GCPS+RVQ G FGA LM++P LV+ C+ AMR
Sbjct: 68 GGSEPAKLAEAARIGVDLGYNEINLNVGCPSDRVQEGRFGACLMSEPELVAACVAAMRAH 127
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVK RIGID+ + + +R F+ V+ AGC FIVHAR A+LK L+PK+NR++P L
Sbjct: 128 HSVPVTVKCRIGIDEQDEEEDLRRFIEVVAGAGCTRFIVHARKAWLKGLSPKENREVPPL 187
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK P LEI++NGGI+T + HL+++DGVMLGR AY+NP ++++ D +
Sbjct: 188 DYARVYRLKAAHPGLEIVLNGGIETIDDARAHLDHVDGVMLGRAAYQNPAILADVDRVIF 247
Query: 251 SNLPQYKIPTRIDIIN 266
+ + PTR +N
Sbjct: 248 GV--EAESPTRAAALN 261
>gi|419954119|ref|ZP_14470260.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri TS44]
gi|387969208|gb|EIK53492.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri TS44]
Length = 311
Score = 280 bits (715), Expect = 4e-72, Method: Composition-based stats.
Identities = 130/229 (56%), Positives = 170/229 (74%), Gaps = 1/229 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+ L ++A EHP+A Q+G ++
Sbjct: 1 MDWTDRHCRYFLRQLSRHALLYTEMVTTGALIHGDAARYLRYDACEHPLALQLGGSDAAD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRDSV I++TV
Sbjct: 61 LAICAKMAETAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDSVGIEVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y+
Sbjct: 121 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP+LEII+NGGIKT E + HL DGVMLGREAY NP+L++ D
Sbjct: 181 LKRDFPDLEIILNGGIKTLDECEAHLRTFDGVMLGREAYHNPYLLAQVD 229
>gi|424044986|ref|ZP_17782557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
gi|408887165|gb|EKM25800.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
Length = 315
Score = 280 bits (715), Expect = 4e-72, Method: Composition-based stats.
Identities = 133/242 (54%), Positives = 173/242 (71%), Gaps = 2/242 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G +
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNAAD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TV
Sbjct: 61 LATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 255
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 181 QLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAPV 240
Query: 256 YK 257
K
Sbjct: 241 KK 242
>gi|254427220|ref|ZP_05040927.1| TIM-barrel protein, yjbN family [Alcanivorax sp. DG881]
gi|196193389|gb|EDX88348.1| TIM-barrel protein, yjbN family [Alcanivorax sp. DG881]
Length = 350
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 181/255 (70%), Gaps = 3/255 (1%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R++S+APMM+ T R R R ITR++ LYTEM QAIL G++ L FN EEHP+A Q
Sbjct: 34 RRLSVAPMMDWTTRDYRFLARLITRHTLLYTEMVVAQAILHGDRDRFLSFNNEEHPVALQ 93
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G ++P++LA++++I +GYDEINLN GCPS+RVQ G GAILM +P LV+ C++AM+
Sbjct: 94 LGGSDPQQLAEASRIAGDYGYDEINLNVGCPSDRVQQGKIGAILMAEPELVARCVEAMQA 153
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V + +TVK RIGIDD + YDF+ FVG + +AGC + +HAR A L L+PK+NR IP
Sbjct: 154 AVRVPVTVKTRIGIDDQDDYDFLYRFVGRMEAAGCTSLTIHARKAILSGLSPKENRDIPP 213
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L Y Y +K+ FP +EII+NGG+KT ++ H+ +DGVM+GREAY+NP+ ++ D
Sbjct: 214 LIYQRAYAIKQAFPHIEIILNGGVKTLDQVHEHMGEVDGVMIGREAYQNPYFLAEADRVV 273
Query: 250 YSNLPQYKIPTRIDI 264
+ + + IP+R+ I
Sbjct: 274 FGD--DHAIPSRLAI 286
>gi|443471636|ref|ZP_21061697.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|443473202|ref|ZP_21063227.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|442901737|gb|ELS27526.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|442903765|gb|ELS29056.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
Length = 312
Score = 280 bits (715), Expect = 4e-72, Method: Composition-based stats.
Identities = 131/230 (56%), Positives = 169/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR F RQ++R + LYTEM TT A+L G+++ L + EHP+A Q+G + P+
Sbjct: 1 MMDWTDRHCRFFLRQLSRQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSVPQ 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM D+VEI +T
Sbjct: 61 DLAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMLDAVEIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR+IP L+Y
Sbjct: 121 VKHRIGINGRDSYAELCDFVGQVREAGCQSFTVHARIAILEGLSPKENREIPPLRYEVAA 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP+LEII+NGGIKT E HL + DGVMLGREAY NP+L++ D
Sbjct: 181 QLKQDFPDLEIILNGGIKTLDECRAHLEHFDGVMLGREAYHNPYLLAEVD 230
>gi|126658190|ref|ZP_01729341.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
gi|126620561|gb|EAZ91279.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
Length = 341
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 173/241 (71%), Gaps = 1/241 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R F RQITR++ LYTEM T AI G++ LDF+ EE P++ Q+G
Sbjct: 12 LSVAPMMDYTDRHFRYFMRQITRHTLLYTEMIVTAAIKHGDRSKLLDFSPEEKPLSLQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA+ A I + WGYDE+NLN GCPS+RVQ+G FGA LM P LV+ C++ M+ +V
Sbjct: 72 GDKPHELAECAIIAEDWGYDEVNLNVGCPSDRVQSGHFGACLMANPDLVAQCVEKMQKAV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVKHRIGIDD +SY+ + FV VS AGC+ F VHAR A+LK L+PK+NR IP L+
Sbjct: 132 TIPVTVKHRIGIDDQDSYENMAQFVKVVSDAGCQRFTVHARKAWLKGLSPKENRNIPPLR 191
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y VY LK++FP L I INGGI +++ HL +D VM+GR AY NP+L + D + Y
Sbjct: 192 YEAVYRLKQEFPHLFIEINGGITNLEQVRNHLELVDAVMIGRAAYDNPYLFATVDRDIYQ 251
Query: 252 N 252
+
Sbjct: 252 D 252
>gi|428774197|ref|YP_007165985.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium stanieri PCC
7202]
gi|428688476|gb|AFZ48336.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium stanieri PCC
7202]
Length = 333
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/254 (51%), Positives = 181/254 (71%), Gaps = 3/254 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ +DRH R RQ+T+ S LYTEM +QAI+ G++ L+F+ E P+A Q+G
Sbjct: 11 VSVAPMMDYSDRHFRYIMRQMTKKSLLYTEMINSQAIIHGDRPKLLNFSPAEKPVAIQLG 70
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P++LA+ AKI++ WGYDEINLN GCPS RVQ+G FGA LM +P V+ CI AM +V
Sbjct: 71 GDNPQQLAECAKIVEDWGYDEINLNVGCPSARVQSGNFGACLMAQPHKVAQCIAAMNQAV 130
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVKHRIGIDD +SY+ + +FV V+ AGC+ F+VHAR A+L+ L+PK+NR IP L+
Sbjct: 131 NIPVTVKHRIGIDDQDSYEQMANFVKIVAQAGCQRFVVHARKAWLQGLSPKENRHIPPLR 190
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y VY LK+DFP L I INGGI T ++I +DGVM+GR A NP+L+++ D Y
Sbjct: 191 YEDVYRLKRDFPHLIIEINGGITTLEQIKAQFPLVDGVMIGRVACDNPYLLASIDQEIYG 250
Query: 252 NLPQYKIPTRIDII 265
+ IPTR ++I
Sbjct: 251 D--DTPIPTREEVI 262
>gi|332531883|ref|ZP_08407767.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038510|gb|EGI74953.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
Length = 313
Score = 279 bits (714), Expect = 5e-72, Method: Composition-based stats.
Identities = 130/267 (48%), Positives = 183/267 (68%), Gaps = 16/267 (5%)
Query: 15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE 74
+APM++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++
Sbjct: 1 MAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSD 60
Query: 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 134
PK LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM++ V I
Sbjct: 61 PKALAQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKNEVNIP 120
Query: 135 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 194
+TVK RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y
Sbjct: 121 VTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPR 180
Query: 195 VYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP 254
VY LKKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y
Sbjct: 181 VYQLKKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYG--- 237
Query: 255 QYKIPTRIDIINLDSENRENEGDIILS 281
DS N ++ D++ S
Sbjct: 238 -------------DSANTQSRHDVVRS 251
>gi|307154453|ref|YP_003889837.1| yjbN family TIM-barrel protein [Cyanothece sp. PCC 7822]
gi|306984681|gb|ADN16562.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 7822]
Length = 329
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/241 (54%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM TDRH R RQITR + LYTEM TT AI+ G++ LDF+ EE P+A Q+G
Sbjct: 12 LSVAPMMERTDRHFRYLMRQITRRTLLYTEMITTAAIIHGDRHKLLDFSTEEKPLALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P++LA A I WGYDE+NLN GCPS+RVQNG FGA LM +P V+ C+ AM+ +V
Sbjct: 72 GDNPQELALCASIAADWGYDEVNLNVGCPSDRVQNGNFGACLMAQPEKVAHCVAAMQKAV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVKHRIGIDD + Y+ + +FV VS AGC F VHAR A+LK L+PK+NR IP L+
Sbjct: 132 NIPVTVKHRIGIDDRDRYEDLANFVRIVSEAGCCRFSVHARKAWLKGLSPKENRTIPPLR 191
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y VY LK++FP L I INGGI T +++ L ++DGVM+GR AY NP+L + D + Y
Sbjct: 192 YEDVYRLKQEFPHLFIEINGGITTLEQVHQQLQWVDGVMIGRAAYDNPYLFATVDRDIYG 251
Query: 252 N 252
Sbjct: 252 E 252
>gi|421350237|ref|ZP_15800604.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
gi|395954959|gb|EJH65565.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
Length = 316
Score = 279 bits (714), Expect = 5e-72, Method: Composition-based stats.
Identities = 126/230 (54%), Positives = 168/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TV
Sbjct: 61 LAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRAVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 181 QIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 230
>gi|398883738|ref|ZP_10638687.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM60]
gi|398196122|gb|EJM83139.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM60]
Length = 312
Score = 279 bits (714), Expect = 5e-72, Method: Composition-based stats.
Identities = 132/236 (55%), Positives = 169/236 (71%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR F R ++R++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 1 MMDWTDRHCRFFLRLLSRHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPL 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA A++ Q+ GYDE+NLN GCPS+RVQN GA+LM P LV+DC+KAMRD+V I +T
Sbjct: 61 DLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGAVLMGHPQLVADCVKAMRDAVSIPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 121 VKHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAA 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 181 RLKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS 236
>gi|85060114|ref|YP_455816.1| tRNA-dihydrouridine synthase A [Sodalis glossinidius str.
'morsitans']
gi|84780634|dbj|BAE75411.1| conserced hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 343
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TD HCR F RQ++R + LYTEM TT A+L K L ++ EHP+A Q+G
Sbjct: 27 RFSVAPMLDWTDSHCRFFLRQLSRRALLYTEMVTTGALLFGKGDYLAYHDAEHPLALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+EP LA+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + V+ CI AMR++V
Sbjct: 87 GSEPDALARCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEKDRVAACIAAMREAV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ ITVK RIGID+ +SY F+ +F+ TV++ GC TFI+HAR A+L L+PK+NR+IP L
Sbjct: 147 TLPITVKTRIGIDEQDSYAFLCEFIDTVATHGGCETFIIHARKAWLNGLSPKENREIPPL 206
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y+ VY LK+DFP L +++NGGIKT + HL +DGVM+GREAY+NP +++ D +
Sbjct: 207 DYDRVYQLKRDFPALRLMLNGGIKTLHDAREHLQKLDGVMMGREAYQNPGILARVDSELF 266
Query: 251 SN 252
+
Sbjct: 267 GD 268
>gi|434397477|ref|YP_007131481.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
gi|428268574|gb|AFZ34515.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
Length = 330
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 176/254 (69%), Gaps = 3/254 (1%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+SIAPMM TDRH R RQITR + LYTEM TT AI+ G++ LDF+ EE P+ Q+G
Sbjct: 15 LSIAPMMERTDRHFRYLMRQITRRTLLYTEMITTAAIIHGDRHKLLDFSLEEKPLVLQLG 74
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P++LA+ AKI + WGYD +NLN GCPS RVQNG FGA LM +P LV+ + M+D+V
Sbjct: 75 GDHPQELAQCAKIGEDWGYDAVNLNVGCPSPRVQNGNFGACLMAQPELVATAVAKMQDAV 134
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
I +TVKHRIGID+ + Y+ + FV V+ AGCR FIVHAR A+LK L+PK+NR IP L+
Sbjct: 135 SIPVTVKHRIGIDERDRYEDLAQFVQIVAEAGCRHFIVHARKAWLKGLSPKENRNIPPLR 194
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y V+ LK++FP L I INGGI T ++I LNY+D VM+GR AY +P+L + D + Y
Sbjct: 195 YQDVHRLKQEFPHLLIEINGGIITLEQIKEQLNYVDAVMIGRAAYDDPYLFATVDRDIYQ 254
Query: 252 NLPQYKIPTRIDII 265
PTR ++
Sbjct: 255 Q--SATPPTRHQVV 266
>gi|269468050|gb|EEZ79768.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium]
Length = 368
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/340 (46%), Positives = 207/340 (60%), Gaps = 32/340 (9%)
Query: 644 DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNI 703
D Y+EALL D++ L + R IH+IFIGGGTPSL+S L L +K L F+KNI
Sbjct: 32 DRNGYIEALLKDLDKDLKYVQGRSIHSIFIGGGTPSLMSADELHELFTGLKSKLTFEKNI 91
Query: 704 SITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 763
ITLE NP TFE++KF ++ IGINRLSIG+QSF +++LN LGR H ++ A A A Q
Sbjct: 92 EITLETNPGTFEVDKFKAFKDIGINRLSIGVQSFQDRHLNALGRIHSAEDASKACTYASQ 151
Query: 764 YFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 823
FNNFN+DL+Y L Q++ + + DLN AI SP H+S Y LTIEPNT F K+PP ++P +
Sbjct: 152 IFNNFNIDLMYGLEGQSIDDCLSDLNQAIDLSPQHVSFYQLTIEPNTLFAKFPP-TLPKD 210
Query: 824 DENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG-NSIAKSKKIEK 882
D+ M ++ LL+ ++ YE+SA+ K S+HNLNYW+FGDY+G + A K E
Sbjct: 211 DDIWRMGEQGVDLLEQCGFERYEVSAFGKI--PSKHNLNYWRFGDYIGIGAGAHGKITES 268
Query: 883 KC----------------------------LIFEFMLNALRLKDGFSPNLFFERTGINIK 914
K L FEFMLNALRLK+GF +LF RTG +I
Sbjct: 269 KTGKVVRTLKSKSPKEYIQNRNKTLEVIDNLSFEFMLNALRLKNGFDVDLFKARTGKDIN 328
Query: 915 IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
+I +LK AE +GL+ I PT G FLNDL +F+
Sbjct: 329 VINEQLKRAESMGLVNLTKDRITPTKKGFDFLNDLISLFM 368
>gi|152972912|ref|YP_001338058.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957761|gb|ABR79791.1| conserved protein, FMN-linked [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 313
Score = 279 bits (713), Expect = 7e-72, Method: Composition-based stats.
Identities = 130/230 (56%), Positives = 172/230 (74%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+
Sbjct: 1 MLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LLV+DCIKAMRD V I +TV
Sbjct: 61 LAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNALLVADCIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 121 KTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVW 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D
Sbjct: 181 QLKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVD 230
>gi|424658273|ref|ZP_18095531.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
gi|408055444|gb|EKG90374.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
Length = 316
Score = 279 bits (713), Expect = 7e-72, Method: Composition-based stats.
Identities = 126/230 (54%), Positives = 168/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TV
Sbjct: 61 LAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLNYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 181 QIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 230
>gi|386013006|ref|YP_005931283.1| TRNA-dihydrouridine synthase A [Pseudomonas putida BIRD-1]
gi|313499712|gb|ADR61078.1| TRNA-dihydrouridine synthase A [Pseudomonas putida BIRD-1]
Length = 312
Score = 279 bits (713), Expect = 7e-72, Method: Composition-based stats.
Identities = 129/236 (54%), Positives = 168/236 (71%), Gaps = 1/236 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPK 76
MM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 1 MMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPA 60
Query: 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +T
Sbjct: 61 DLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVT 120
Query: 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
VKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 121 VKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAA 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 252
LK+DFP+LEI++NGGIK+ E HL DGVMLGREAY NP+L++ D + +
Sbjct: 181 QLKRDFPDLEIVLNGGIKSLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGS 236
>gi|260779457|ref|ZP_05888347.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604266|gb|EEX30570.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
Length = 315
Score = 278 bits (712), Expect = 7e-72, Method: Composition-based stats.
Identities = 129/230 (56%), Positives = 167/230 (72%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+
Sbjct: 1 MLDWTDRHCRYFHRLLTSETLLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +PLLV++C+ AMRD V++ +TV
Sbjct: 61 LATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPLLVAECVAAMRDVVDVPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS G F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGSDQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LKKDF L I INGG+KT + HL ++DGVM+GREAY+NP++++ D
Sbjct: 181 QLKKDFAHLNIAINGGVKTLDDTKEHLTHLDGVMVGREAYQNPYILAEVD 230
>gi|255747176|ref|ZP_05421119.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262147248|ref|ZP_06028049.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262166864|ref|ZP_06034586.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262190629|ref|ZP_06048865.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|384423684|ref|YP_005633042.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|417811453|ref|ZP_12458115.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|417815223|ref|ZP_12461859.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|417819263|ref|ZP_12465881.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|418336243|ref|ZP_12945143.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|418342624|ref|ZP_12949426.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|418356574|ref|ZP_12959291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|419824849|ref|ZP_14348357.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|419835325|ref|ZP_14358771.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|421315620|ref|ZP_15766193.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|421319164|ref|ZP_15769724.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|421323199|ref|ZP_15773729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|421330603|ref|ZP_15781086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|421334200|ref|ZP_15784671.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|421338101|ref|ZP_15788541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|421341907|ref|ZP_15792315.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|421348846|ref|ZP_15799220.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|421356363|ref|ZP_15806692.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|422305806|ref|ZP_16392994.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|422890417|ref|ZP_16932844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|422901216|ref|ZP_16936596.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|422905402|ref|ZP_16940261.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|422912122|ref|ZP_16946653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|422921629|ref|ZP_16954842.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|422924600|ref|ZP_16957641.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|423143649|ref|ZP_17131268.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|423148632|ref|ZP_17135995.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|423152408|ref|ZP_17139626.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|423155207|ref|ZP_17142347.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|423159066|ref|ZP_17146041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|423163743|ref|ZP_17150541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|423729763|ref|ZP_17703086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|423733686|ref|ZP_17706903.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|423746985|ref|ZP_17711274.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|423891595|ref|ZP_17725288.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|423926371|ref|ZP_17729905.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|423946111|ref|ZP_17733325.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|423975254|ref|ZP_17736873.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|424000926|ref|ZP_17744020.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|424005086|ref|ZP_17748075.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|424007916|ref|ZP_17750872.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|424022881|ref|ZP_17762549.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|424589656|ref|ZP_18029104.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|424593901|ref|ZP_18033245.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|424597835|ref|ZP_18037038.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|424600600|ref|ZP_18039760.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|424605516|ref|ZP_18044485.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|424609233|ref|ZP_18048097.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|424612151|ref|ZP_18050963.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|424616029|ref|ZP_18054725.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|424620789|ref|ZP_18059321.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|424643609|ref|ZP_18081368.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|424651529|ref|ZP_18089058.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|424655476|ref|ZP_18092784.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|429885245|ref|ZP_19366841.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|440712312|ref|ZP_20892935.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443502428|ref|ZP_21069422.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443506335|ref|ZP_21073134.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443510171|ref|ZP_21076844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443514007|ref|ZP_21080553.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443517820|ref|ZP_21084244.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443522402|ref|ZP_21088653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443529332|ref|ZP_21095350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443534069|ref|ZP_21099993.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443536739|ref|ZP_21102598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|449054390|ref|ZP_21733058.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
gi|255735225|gb|EET90627.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262024694|gb|EEY43373.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262031308|gb|EEY49921.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262033494|gb|EEY51996.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|327483237|gb|AEA77644.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|340042793|gb|EGR03757.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|340044179|gb|EGR05133.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|340045270|gb|EGR06215.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|341625864|gb|EGS51287.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|341627287|gb|EGS52606.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|341627856|gb|EGS53147.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|341641404|gb|EGS65957.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|341648380|gb|EGS72441.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|341648777|gb|EGS72812.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|356422305|gb|EHH75783.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|356426972|gb|EHH80250.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|356433419|gb|EHH86609.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|356434893|gb|EHH88056.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|356438189|gb|EHH91237.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|356443560|gb|EHH96380.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|356450670|gb|EHI03386.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|356451375|gb|EHI04062.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|356456564|gb|EHI09160.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|395922886|gb|EJH33700.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|395924059|gb|EJH34869.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|395925938|gb|EJH36731.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|395934998|gb|EJH45734.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|395937960|gb|EJH48666.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|395939138|gb|EJH49822.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|395946601|gb|EJH57263.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|395946630|gb|EJH57291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|395949073|gb|EJH59706.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|395964169|gb|EJH74408.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|395964343|gb|EJH74572.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|395967285|gb|EJH77382.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|395975825|gb|EJH85300.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|395979547|gb|EJH88895.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|408010284|gb|EKG48152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|408017232|gb|EKG54749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|408036766|gb|EKG73185.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|408037651|gb|EKG74036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|408045146|gb|EKG81011.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|408047091|gb|EKG82746.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|408057830|gb|EKG92664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|408611999|gb|EKK85350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|408627872|gb|EKL00664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|408628064|gb|EKL00841.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|408631968|gb|EKL04480.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|408643238|gb|EKL14972.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|408659229|gb|EKL30282.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|408660151|gb|EKL31177.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|408662188|gb|EKL33157.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|408666288|gb|EKL37083.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|408849421|gb|EKL89440.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|408849877|gb|EKL89877.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|408859105|gb|EKL98772.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|408867001|gb|EKM06364.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|408874802|gb|EKM13969.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|429227961|gb|EKY33916.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|439972085|gb|ELP48390.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443433213|gb|ELS75729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443437045|gb|ELS83153.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443440877|gb|ELS90557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443444697|gb|ELS97964.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443448535|gb|ELT05163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443451593|gb|ELT11846.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443459900|gb|ELT27293.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443462762|gb|ELT33789.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443467741|gb|ELT42396.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|448266183|gb|EMB03413.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
Length = 316
Score = 278 bits (712), Expect = 8e-72, Method: Composition-based stats.
Identities = 126/230 (54%), Positives = 168/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TV
Sbjct: 61 LAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 181 QIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 230
>gi|389872040|ref|YP_006379459.1| coproporphyrinogen III oxidase [Advenella kashmirensis WT001]
gi|388537289|gb|AFK62477.1| coproporphyrinogen III oxidase [Advenella kashmirensis WT001]
Length = 405
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 135/350 (38%), Positives = 205/350 (58%), Gaps = 37/350 (10%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+I E ++L AL D+E +LP++ R ++T+FIGGGTPSL+S ++ +L ++ L
Sbjct: 50 DIPEARFLAALRRDLEETLPLVWGRSVYTVFIGGGTPSLLSGEAIEQMLAMVRSYLPLAP 109
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ IT+EANP T E ++F Y+ G+NR S+G+QSF++K L LGR H+++QA+ AIE+A
Sbjct: 110 SAEITMEANPGTAEADRFAQYAAAGVNRFSLGVQSFDDKALQQLGRIHNARQAEKAIELA 169
Query: 762 KQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821
+ N+DL+YALP QT+++ D+ A+ + HLSLY LT+EPNT F K+PP +P
Sbjct: 170 MNAVSQVNIDLMYALPGQTIAKARADVQRALAFGTQHLSLYHLTMEPNTVFAKFPPKDLP 229
Query: 822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG---------- 871
D A +QD + ++ ++ YEISAY++ G ++HNLNYW+FGDY+G
Sbjct: 230 DEDSAADIQDMLLEQTRDAGFEQYEISAYARPGCRARHNLNYWEFGDYIGIGPGAHGKLS 289
Query: 872 ---------------------------NSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL 904
I + + L FEFMLNALRL G L
Sbjct: 290 FQDRIVRRANVKNPQTWMDRALEADGAGRIMTEQSLAVADLPFEFMLNALRLVKGVPATL 349
Query: 905 FFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
F ERT +++ + ++ A + GL++ + I+PT G+ FLNDLQ +FL
Sbjct: 350 FEERTSLSLLSVAPTIRKAVERGLMEPDPMTIRPTERGQAFLNDLQAMFL 399
>gi|372269222|ref|ZP_09505270.1| tRNA-dihydrouridine synthase A [Alteromonas sp. S89]
Length = 311
Score = 278 bits (712), Expect = 8e-72, Method: Composition-based stats.
Identities = 127/237 (53%), Positives = 174/237 (73%), Gaps = 1/237 (0%)
Query: 19 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M+ +DRHCR F R ++ + LYTEM TT AIL G+++ LDF+ EE P+A Q+G ++P+
Sbjct: 1 MDWSDRHCRYFWRLFSKQALLYTEMVTTGAILFGDQQSHLDFSVEEQPVALQLGGSDPQD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+ A+I ++WGY E+NLNCGCPS+RV+ G FGA LM +P LV++C+ AMR++V I +TV
Sbjct: 61 LARCAEIAEQWGYSELNLNCGCPSDRVKKGRFGACLMAEPDLVAECLGAMREAVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 197
KHRIGIDD+ Y + FV + AG TFIVHAR A+L L+PK+NR+IP LKY+ VY
Sbjct: 121 KHRIGIDDMEDYPGLTRFVEAQARAGITTFIVHARKAWLNGLSPKENREIPPLKYDMVYQ 180
Query: 198 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP 254
LKKD+PELEI++NGGI + +E HL +DGVMLGR AY+ P L+++ D + P
Sbjct: 181 LKKDYPELEIVLNGGINSIEECQHHLQLLDGVMLGRAAYQTPALLADVDAALFGGEP 237
>gi|428776577|ref|YP_007168364.1| tRNA-U16,U17-dihydrouridine synthase [Halothece sp. PCC 7418]
gi|428690856|gb|AFZ44150.1| tRNA-U16,U17-dihydrouridine synthase [Halothece sp. PCC 7418]
Length = 344
Score = 278 bits (712), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 176/241 (73%), Gaps = 1/241 (0%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R RQITR + LYTEM T AIL G++ L F+ EEHP+A Q+G
Sbjct: 27 LSVAPMMDRTDRHFRYLMRQITRKTLLYTEMVTIPAILNGDRAKLLGFSPEEHPLALQLG 86
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+K A+ A++ +GYDEINLN GCPS+RV++G FGA LM +P V+ ++AM+++V
Sbjct: 87 GDDPEKAAECARMAADYGYDEINLNVGCPSDRVKSGNFGACLMAQPETVATVVEAMQNAV 146
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
EI +TVKHRIGID+ + Y+ + +FV VS AGC+ F VHAR A+L+ L+PK+NR +P L+
Sbjct: 147 EIPVTVKHRIGIDERDRYEDMSEFVRVVSEAGCQRFTVHARKAWLQGLSPKENRNVPPLR 206
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
Y VY LK++FP+L I INGGIKT EI HLN++D VM+GR AY NP+L + D Y
Sbjct: 207 YEDVYRLKQEFPQLFIEINGGIKTLPEIKEHLNHLDAVMIGRAAYDNPYLFATVDQEIYG 266
Query: 252 N 252
Sbjct: 267 Q 267
>gi|288550133|ref|ZP_05969393.2| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
gi|288316334|gb|EFC55272.1| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
Length = 313
Score = 278 bits (711), Expect = 9e-72, Method: Composition-based stats.
Identities = 131/230 (56%), Positives = 170/230 (73%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSDEEHPVALQLGGSDPAA 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+D IKAMRD V I +TV
Sbjct: 61 LAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADSIKAMRDVVSIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 121 KTRIGIDDQDSYEFLCDFIDTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 181 QLKRDFPHLTMSINGGIKSLEEAKTHLAHMDGVMVGREAYQNPGILATVD 230
>gi|254508997|ref|ZP_05121103.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
gi|219548101|gb|EED25120.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
Length = 315
Score = 278 bits (711), Expect = 9e-72, Method: Composition-based stats.
Identities = 130/230 (56%), Positives = 166/230 (72%), Gaps = 1/230 (0%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+
Sbjct: 1 MLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIYGKGDFLAYNEEEHPVALQLGGSNPQD 60
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
LA AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMRD V+I +TV
Sbjct: 61 LATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMRDVVDIPVTV 120
Query: 138 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196
K RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 121 KTRIGIDDQDSYEFLTDFVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAY 180
Query: 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
LKKDF L I +NGG+KT + HL ++DGVM+GREAY+NP+L++ D
Sbjct: 181 QLKKDFAHLNIAVNGGVKTLGDSLSHLEHVDGVMVGREAYQNPYLLAEVD 230
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,463,765,862
Number of Sequences: 23463169
Number of extensions: 620855779
Number of successful extensions: 1679524
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 19458
Number of HSP's successfully gapped in prelim test: 5339
Number of HSP's that attempted gapping in prelim test: 1635620
Number of HSP's gapped (non-prelim): 27990
length of query: 956
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 804
effective length of database: 8,792,793,679
effective search space: 7069406117916
effective search space used: 7069406117916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)