BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2378
(956 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0P|B Chain B, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0U|X Chain X, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
pdb|3B0U|Y Chain Y, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
Length = 350
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 170/254 (66%), Gaps = 5/254 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APM++ TDRH R RQ++ LYTEM QA+L GN++ L F EEHPIA Q+
Sbjct: 5 RLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQL 64
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
++PK LA++A+I + +GYDEINLN GCPS + Q G +GA L+ V + +KAM ++
Sbjct: 65 AGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA 124
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVK R+G++ +Y + V ++ AG + F+VHAR+A L L+ K NR+IP L
Sbjct: 125 VRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALL-ALSTKANREIPPL 183
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
++++V+ LK DFP+L + NGGI++ +E HL +DGVMLGR Y++PF++ D +
Sbjct: 184 RHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRVF 243
Query: 251 SNLPQYKIPTRIDI 264
LP+ P+R+++
Sbjct: 244 -GLPRR--PSRLEV 254
>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
pdb|3B0V|D Chain D, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
Length = 363
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 165/254 (64%), Gaps = 5/254 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+AP ++ TDRH R RQ++ LYTE QA+L GN++ L F EEHPIA Q+
Sbjct: 26 RLSVAPXVDRTDRHFRFLVRQVSLGVRLYTEXTVDQAVLRGNRERLLAFRPEEHPIALQL 85
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
++PK LA++A+I + +GYDEINLN GCPS + Q G +GA L+ V + +KA ++
Sbjct: 86 AGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAXGEA 145
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
V + +TVK R+G++ +Y + V + AG + F+VHAR+A L L+ K NR+IP L
Sbjct: 146 VRVPVTVKXRLGLEGKETYRGLAQSVEAXAEAGVKVFVVHARSALL-ALSTKANREIPPL 204
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
++++V+ LK DFP+L + NGGI++ +E HL +DGV LGR Y++PF++ D +
Sbjct: 205 RHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVXLGRAVYEDPFVLEEADRRVF 264
Query: 251 SNLPQYKIPTRIDI 264
LP+ P+R+++
Sbjct: 265 -GLPRR--PSRLEV 275
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 186 bits (471), Expect = 6e-47, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 186 bits (471), Expect = 6e-47, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 186 bits (471), Expect = 7e-47, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 114/159 (71%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 171 bits (433), Expect = 2e-42, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 112/159 (70%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD++ +++ +T + ++ G++C+ +T++ QL L MM N+
Sbjct: 32 VMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTHNS 91
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S F T FTV+IEAA GVTTG+SA+DR TI+ A + AKP+D+ +PGH+FPL+ + GGVL
Sbjct: 92 SQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVL 151
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
R GHTEA DL LAG P+ V+CE+ NDDG+MA A E
Sbjct: 152 SRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPE 190
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 154 bits (390), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I +++ TP + FM +Y G +C+ L C +L L M N
Sbjct: 26 VIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQ 85
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
GT +TV+++A NG+ TGISASDRA T+++ + + D +PGH+ PL+AK GGVL
Sbjct: 86 DKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVL 145
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARAQEKNIL 426
R GHTEA DL ++AGL P+ ICEI++ D+G+MA E +
Sbjct: 146 RRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 190
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 154 bits (390), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I +++ TP + FM +Y G +C+ L C +L L M N
Sbjct: 20 VIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQ 79
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
GT +TV+++A NG+ TGISASDRA T+++ + + D +PGH+ PL+AK GGVL
Sbjct: 80 DKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVL 139
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARAQEKNIL 426
R GHTEA DL ++AGL P+ ICEI++ D+G+MA E +
Sbjct: 140 RRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 184
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I++++ +T + F+ +Y+ G +C+ L+E+ QL+L M +
Sbjct: 21 LIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRS 80
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
GT +T++ + A G TTGISA DRA T + ++ +KP D ++PGHI PL+A G +
Sbjct: 81 DRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLK 140
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMAR 419
R GHTEA L+ LAGL P+ VICE++ D DG M R
Sbjct: 141 KRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMR 177
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 135 bits (340), Expect = 1e-31, Method: Composition-based stats.
Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD +RENE D+I++++ VT + FM +++ GLIC LT + L L M N
Sbjct: 28 VVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNA 87
Query: 324 SSFGTNFTVSIEAAN-GVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGV 382
GT +TVS++A + TTGISA DRA ++ ++ A+PS +PGH+FPL+A GGV
Sbjct: 88 DPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGV 147
Query: 383 LIRGGHTEAGCDLTKLAGLTPSAVICEILND----DGTMARA 420
R GHTEAG +L +LAG P AVI EI++D +G RA
Sbjct: 148 RARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRA 189
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 30/196 (15%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK--- 320
I+ DS+ RE E D++++S F+TP I M K A GLIC L C +L + M
Sbjct: 17 ILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILE 76
Query: 321 -------------KNNSSFGTNFTVSIEAANGVT-TGISASDRAHTIKVASS--KKAKPS 364
N+ + + SI + T TGI+ +DRA TIK + K+ + +
Sbjct: 77 FASQKFKVLRELYPNDIPYDEKSSFSITINHRKTFTGITDNDRAFTIKKLAELVKEGRFN 136
Query: 365 DIVQ----PGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDG----- 415
D + PGH+ L+A +G V R GHTE L +LA L P ICE++ DDG
Sbjct: 137 DFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSK 196
Query: 416 --TMARAQEKNILHIS 429
T A++ N++++S
Sbjct: 197 NETKRYAEKHNLIYLS 212
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 96/196 (48%), Gaps = 30/196 (15%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK--- 320
I+ DS+ RE E D++++S F+TP I M K A GLIC L C +L + M
Sbjct: 17 ILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILE 76
Query: 321 -------------KNNSSFGTNFTVSIEAANGVT-TGISASDRAHTIKVASS--KKAKPS 364
N+ + + SI + T TGI+ +DRA TIK + K+ + +
Sbjct: 77 FASQKFKVLRELYPNDIPYDEKSSFSITINHRKTFTGITDNDRAFTIKKLAELVKEGRFN 136
Query: 365 DIVQ----PGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDG----- 415
D + PG + L+A +G V R GHTE L +LA L P ICE++ DDG
Sbjct: 137 DFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSK 196
Query: 416 --TMARAQEKNILHIS 429
T A++ N++++S
Sbjct: 197 NETKRYAEKHNLIYLS 212
>pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
Length = 153
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 414 DGTMARAQEKNILHIS-VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANE 472
DG E+N + ++ VPGA EIPL K + K++ +I +G +IRG T H++ + NE
Sbjct: 35 DGLKRHGVEENDIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNE 94
Query: 473 TISNIMQISIKNNIPIINAILTTETIEQANSRILTKG 509
+ +S++ +IP+I +LTTETIEQA R TK
Sbjct: 95 VAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKA 131
>pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1ZIS|A Chain A, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|B Chain B, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|C Chain C, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|D Chain D, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|E Chain E, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|F Chain F, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|G Chain G, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|H Chain H, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|I Chain I, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|J Chain J, Recombinant Lumazine Synthase (hexagonal Form)
Length = 154
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 383 LIRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARAQEKNILHIS-VPGALEIPLA 439
+I+G G + + G + ++L+ +D + + N + ++ VPGA EIP A
Sbjct: 3 IIQGNLVGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFA 62
Query: 440 LKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIE 499
K + + KK++ +I +G +IRG T H++ + NE I Q + +P+I I+TTE IE
Sbjct: 63 AKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIE 122
Query: 500 QANSRILTKG 509
QA R TK
Sbjct: 123 QAIERAGTKA 132
>pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-s10
Transcription Antitermination Complex.
pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex
Length = 141
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 60/117 (51%)
Query: 537 EFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII 596
E A+Q +Y W + D+ +E + VD YF +L GV + +L + +
Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 72
Query: 597 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALL 653
R + EL +E VL I YEL +PYKV INEAIEL KSFG D K++ +L
Sbjct: 73 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 129
>pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
Length = 139
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 60/117 (51%)
Query: 537 EFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII 596
E A+Q +Y W + D+ +E + VD YF +L GV + +L + +
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70
Query: 597 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALL 653
R + EL +E VL I YEL +PYKV INEAIEL KSFG D K++ +L
Sbjct: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127
>pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
Length = 141
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 60/117 (51%)
Query: 537 EFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII 596
E A+Q +Y W + D+ +E + VD YF +L GV + +L + +
Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 72
Query: 597 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALL 653
R + EL +E VL I YEL +PYKV INEAIEL KSFG + K++ +L
Sbjct: 73 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAENSHKFVNGVL 129
>pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia
Coli Is A Radical Sam Enzyme
Length = 457
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 10/202 (4%)
Query: 647 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSIT 706
+YL+AL ++ P+ R + + GGGTP+ ++ + I+
Sbjct: 84 QYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEIS 143
Query: 707 LEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSK----QAKYAIEIAK 762
+E +P E++ G NRLS+G+Q FN + ++ R D + +A EI
Sbjct: 144 IEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIG- 202
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--KYPPLSM 820
F + N+DLIY LP QT L + +P LS+++ P + K +
Sbjct: 203 --FTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADL 260
Query: 821 PSNDEN-AVMQDKITSLLKNNY 841
PS + ++Q+ I L ++ Y
Sbjct: 261 PSPQQKLDILQETIAFLTQSGY 282
>pdb|3MK3|A Chain A, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|B Chain B, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|C Chain C, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|D Chain D, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|E Chain E, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|F Chain F, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|G Chain G, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|H Chain H, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|I Chain I, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|J Chain J, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|K Chain K, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|L Chain L, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|M Chain M, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|N Chain N, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|O Chain O, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|P Chain P, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Q Chain Q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|R Chain R, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|S Chain S, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|T Chain T, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|U Chain U, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|V Chain V, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|W Chain W, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|X Chain X, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Y Chain Y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Z Chain Z, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|1 Chain 1, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|2 Chain 2, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|3 Chain 3, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|4 Chain 4, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|5 Chain 5, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|6 Chain 6, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|7 Chain 7, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|8 Chain 8, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|9 Chain 9, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|AA Chain a, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|BB Chain b, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|CC Chain c, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|DD Chain d, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|EE Chain e, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|FF Chain f, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|GG Chain g, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|HH Chain h, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|II Chain i, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|JJ Chain j, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|KK Chain k, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|LL Chain l, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|MM Chain m, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|NN Chain n, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|OO Chain o, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|PP Chain p, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|QQ Chain q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|RR Chain r, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|SS Chain s, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|TT Chain t, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|UU Chain u, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|VV Chain v, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|WW Chain w, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|XX Chain x, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|YY Chain y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|A Chain A, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|B Chain B, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|C Chain C, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|D Chain D, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|E Chain E, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|F Chain F, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|G Chain G, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|H Chain H, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|I Chain I, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|J Chain J, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|K Chain K, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|L Chain L, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|M Chain M, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|N Chain N, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|O Chain O, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|P Chain P, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Q Chain Q, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|R Chain R, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|S Chain S, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|T Chain T, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|U Chain U, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|V Chain V, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|W Chain W, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|X Chain X, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Y Chain Y, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Z Chain Z, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|1 Chain 1, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|2 Chain 2, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|3 Chain 3, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|4 Chain 4, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
Length = 156
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 417 MARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISN 476
+ + ++ NI + VPGA E+PLA + + + K++ ++A+G +IRG T HFE +A +
Sbjct: 41 IGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNG 100
Query: 477 IMQISIKNNIPIINAILTTETIEQANSRILTKG 509
+ ++ + +P+ +LTTE+IEQA R TK
Sbjct: 101 LASVAQDSGVPVAFGVLTTESIEQAIERAGTKA 133
>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1NQU|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQV|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQW|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQX|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
Length = 154
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 56/89 (62%)
Query: 420 AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQ 479
+E++I + VPG+ EIP+A + + + + +IAIGV+IRG T HF+ IA+E +
Sbjct: 43 GREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLAN 102
Query: 480 ISIKNNIPIINAILTTETIEQANSRILTK 508
+S++ PI ++T +T+EQA R TK
Sbjct: 103 LSLELRKPITFGVITADTLEQAIERAGTK 131
>pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|B Chain B, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|C Chain C, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|D Chain D, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|E Chain E, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|F Chain F, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|G Chain G, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|H Chain H, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|I Chain I, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|J Chain J, Product Complex Of Lumazine Synthase From Candida Glabrata
Length = 179
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 421 QEKNILHISVPGALEIPLALKNII--QIKK---FNVLIAIGVIIRGETYHFELIANETIS 475
+E+NI+ +VPG+ E+P K Q KK +V+I IGV+I+G T HFE I++ T
Sbjct: 60 KEENIIVETVPGSFELPYGSKRFAEKQAKKGEPLDVVIPIGVLIKGSTMHFEYISDSTTQ 119
Query: 476 NIMQISIKNNIPIINAILTTETIEQANSR 504
IM + K NIP+I +LT T EQA +R
Sbjct: 120 AIMNLQDKINIPVIFGLLTCLTEEQALAR 148
>pdb|2O6H|A Chain A, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|B Chain B, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|C Chain C, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|D Chain D, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|E Chain E, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 414 DGTMARAQEKNILH--ISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHF 466
DG A E + ++VPGALEIP + + +++ +A+G +IRGETYHF
Sbjct: 32 DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHF 91
Query: 467 ELIANETISNIMQISIKNNIPIINAILTTETIEQANSR 504
++++NE+ + +S++ +I I N ILT E EQA R
Sbjct: 92 DIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVR 129
>pdb|2F59|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|B Chain B, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|C Chain C, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|D Chain D, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|E Chain E, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2I0F|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|B Chain B, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|C Chain C, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|D Chain D, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|E Chain E, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
Length = 157
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 414 DGTMARAQEKNILH--ISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHF 466
DG A E + ++VPGALEIP + + +++ +A+G +IRGETYHF
Sbjct: 32 DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHF 91
Query: 467 ELIANETISNIMQISIKNNIPIINAILTTETIEQA 501
++++NE+ + +S++ +I I N ILT E EQA
Sbjct: 92 DIVSNESCRALTDLSVEESIAIGNGILTVENEEQA 126
>pdb|2JFB|A Chain A, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|B Chain B, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|C Chain C, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|D Chain D, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|E Chain E, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|F Chain F, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|G Chain G, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|H Chain H, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|I Chain I, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|J Chain J, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|K Chain K, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|L Chain L, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|M Chain M, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|N Chain N, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|O Chain O, 3d Structure Of Lumazine Synthase From Candida Albicans
Length = 164
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 421 QEKNILHISVPGALEIPLALKNIIQIKK-----FNVLIAIGVIIRGETYHFELIANETIS 475
+E+NI+ +VPG+ E+P K ++ +K + +I IGV+I+G T HFE I + T
Sbjct: 49 KEENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTH 108
Query: 476 NIMQISIKNNIPIINAILTTETIEQANSR 504
+M+++ + IP+I +LT T EQA +R
Sbjct: 109 QLMKLNFELGIPVIFGVLTCLTDEQAEAR 137
>pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|B Chain B, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|C Chain C, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|D Chain D, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|E Chain E, Lumazine Synthase From Saccharomyces Cerevisiae
Length = 168
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 421 QEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANETIS 475
+E NI+ +VPG+ E+P K + K +V+I IGV+I+G T HFE I++ T
Sbjct: 48 EENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISDSTTH 107
Query: 476 NIMQISIKNNIPIINAILTTETIEQANSR 504
+M + K ++P+I +LT T EQA +R
Sbjct: 108 ALMNLQEKVDMPVIFGLLTCMTEEQALAR 136
>pdb|1KZ6|A Chain A, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|B Chain B, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|C Chain C, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|D Chain D, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|E Chain E, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
Length = 159
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSYELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 483 KNNIPIINAILTTETIEQANSR 504
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVIFGLLTVLNEEQALYR 133
>pdb|1KZ9|A Chain A, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|B Chain B, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|C Chain C, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|D Chain D, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|E Chain E, Mutant Enzyme L119f Lumazine Synthase From S.pombe
Length = 159
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 483 KNNIPIINAILTTETIEQANSR 504
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVIFGLLTVLNEEQALYR 133
>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.pombe
Length = 159
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSYELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 483 KNNIPIINAILTTETIEQANSR 504
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 200
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 36/120 (30%)
Query: 421 QEKNILHISVPGALEIPLALKNIIQIKK-------------------------------- 448
+E NI+ SVPG+ E+P+A++ + +
Sbjct: 47 KESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTTAS 106
Query: 449 ----FNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQANSR 504
F+ LIAIGV+I+GET HFE IA+ +M++ + +P+I +LT T +QA +R
Sbjct: 107 STGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKAR 166
>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.pombe
Length = 159
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 483 KNNIPIINAILTTETIEQANSR 504
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|B Chain B, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|C Chain C, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|D Chain D, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|E Chain E, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYX|A Chain A, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|B Chain B, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|C Chain C, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|D Chain D, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|E Chain E, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYY|A Chain A, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|B Chain B, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|C Chain C, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|D Chain D, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|E Chain E, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
Length = 159
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 483 KNNIPIINAILTTETIEQANSR 504
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
Length = 159
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 483 KNNIPIINAILTTETIEQANSR 504
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|1W19|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W29|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|2C92|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C94|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C97|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C9B|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9D|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2VI5|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
Length = 160
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 428 ISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 487
+ V GA+EIP+ + + + + ++A+GV+IRG+T HF+ + + + ++S+ ++ P
Sbjct: 54 VRVLGAIEIPVVAQELA--RNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTP 111
Query: 488 IINAILTTETIEQANSR 504
I N +LTT T EQA R
Sbjct: 112 IANGVLTTNTEEQALDR 128
>pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With
Flavin
Length = 318
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 31/262 (11%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSW----LYTEMFTTQAILGNKKHCLDFNAEEHP-- 65
K+ +AP TD R + W ++E + + L N + + + H
Sbjct: 6 KVGLAPXAGYTDSAFRTL-----AFEWGADFAFSEXVSAKGFLXNSQKTEELLPQPHERN 60
Query: 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
+A Q+ +EP +L+++A+I+ + Y I+LN GCP +V G L+ ++
Sbjct: 61 VAVQIFGSEPNELSEAARILSE-KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVR 119
Query: 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
+R SV +VK R+G + + R V G +H R + +
Sbjct: 120 ELRKSVSGKFSVKTRLGWEKNEVEEIYRILV----EEGVDEVFIHTRTVVQSFTGRAEWK 175
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMS 243
+ + L+K P ++G I T ++ L + DG+++ R A P++
Sbjct: 176 ALSV--------LEKRIPTF---VSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK 224
Query: 244 NFDLNYYSNLPQYKIPTRIDII 265
+ + +Y P+R +I+
Sbjct: 225 Q--IKDFLRSGKYSEPSREEIL 244
>pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|K Chain K, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|L Chain L, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|M Chain M, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|N Chain N, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|O Chain O, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|P Chain P, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|Q Chain Q, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|R Chain R, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|S Chain S, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|T Chain T, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 156
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 46/75 (61%)
Query: 430 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 489
VPGA E+ + + + + K++ ++ +G +++G+T H++ + N S ++ + + +P +
Sbjct: 53 VPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCV 112
Query: 490 NAILTTETIEQANSR 504
+LT + ++QA +R
Sbjct: 113 FGVLTCDNMDQAINR 127
>pdb|1T13|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1XN1|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|F Chain F, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|G Chain G, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|H Chain H, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|I Chain I, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|J Chain J, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
Length = 158
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 430 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 489
VPGA EIPL K + + ++ ++ +I G Y + +A I+ +MQ+ ++ +P++
Sbjct: 51 VPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVL 110
Query: 490 NAILT 494
+ +LT
Sbjct: 111 SVVLT 115
>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
Length = 158
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 430 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 489
VPGA EIPL K + + ++ ++ +I G Y + +A I+ +MQ+ ++ +P++
Sbjct: 51 VPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVL 110
Query: 490 NAILT 494
+ +LT
Sbjct: 111 SVVLT 115
>pdb|2OBX|A Chain A, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|B Chain B, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|C Chain C, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|D Chain D, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|E Chain E, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|F Chain F, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|G Chain G, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|H Chain H, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|I Chain I, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|J Chain J, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 430 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 489
VPGA EIPL + + + ++ ++ ++ G Y E +A+ I +M + + +P++
Sbjct: 52 VPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVL 111
Query: 490 NAILT 494
+A+LT
Sbjct: 112 SAVLT 116
>pdb|1TZT|A Chain A, T. Maritima Nusb, P21
pdb|1TZT|B Chain B, T. Maritima Nusb, P21
pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
Length = 142
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 529 KTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEI--SNFYKVDKKYFYLILRGVINDIN 586
KTPR R R + ++Q F D +L E ++EI + K K+ +RG+ +++
Sbjct: 2 KTPRRRMRLAVFKALFQHEFRR-DEDL-EQILEEILDETYDKKAKEDARRYIRGIKENLS 59
Query: 587 FLRYDLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDE 645
+ +S +++ S+N LS ++ VL + TYEL IP +V I+EAIE+ K +G +
Sbjct: 60 MIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENS 119
Query: 646 KKYLEALL 653
K++ +L
Sbjct: 120 GKFVNGIL 127
>pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
Length = 156
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 599 SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVEL 658
+++ L +++ +L + +EL +P V+++EA++L K D ++ +L V L
Sbjct: 81 TLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVML 140
Query: 659 SLP 661
P
Sbjct: 141 VTP 143
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 13/235 (5%)
Query: 47 QAILGNKKHCLDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ 105
+ I+ K L+ N E PI V G E +A AKI I LN CP+ V+
Sbjct: 82 EVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPN--VK 139
Query: 106 NGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCR 165
+G G T P + + +KA + ++ + VK + DI + G
Sbjct: 140 HG--GQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMIN 197
Query: 166 T-----FIVHARNAFLKKLNPK-QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219
T F + R L + I + ++ + +D ++ II GG+ +++
Sbjct: 198 TLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDV 256
Query: 220 -DLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRE 273
++++ V +G + +PF+ + QY+I + +I E ++
Sbjct: 257 LEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRIESLESLIQEVKEGKK 311
>pdb|3DAL|A Chain A, Methyltransferase Domain Of Human Pr Domain-Containing
Protein 1
pdb|3DAL|B Chain B, Methyltransferase Domain Of Human Pr Domain-Containing
Protein 1
Length = 196
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 487 PIINAILTTETIEQ-ANS----RILTKGEIIIFINHKNKSLVNLIKNKTPRHRARE 537
P+I I T +T+ + AN RI ++GE+ FI+ N+ N ++ P H RE
Sbjct: 88 PLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPRE 143
>pdb|4B1J|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-hpd
Length = 531
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 205
+AG R ++ + A L K QN K ILKYN Y+ K DF L
Sbjct: 86 TAGSRWELI--QTALLNKFTRPQNLKDAILKYNVAYSKKWDFTAL 128
>pdb|4B1H|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-ribose
Length = 531
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 205
+AG R ++ + A L K QN K ILKYN Y+ K DF L
Sbjct: 86 TAGSRWELI--QTALLNKFTRPQNLKDAILKYNVAYSKKWDFTAL 128
>pdb|4A0D|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
pdb|4B1I|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Oa-adp-hpd
Length = 531
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 205
+AG R ++ + A L K QN K ILKYN Y+ K DF L
Sbjct: 86 TAGSRWELI--QTALLNKFTRPQNLKDAILKYNVAYSKKWDFTAL 128
>pdb|4B1G|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
Length = 531
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 205
+AG R ++ + A L K QN K ILKYN Y+ K DF L
Sbjct: 86 TAGSRWELI--QTALLNKFTRPQNLKDAILKYNVAYSKKWDFTAL 128
>pdb|1OLA|A Chain A, The Structural Basis Of Multispecificity In The
Oligopeptide-binding Protein Oppa
pdb|2OLB|A Chain A, Oligopeptide Binding Protein (Oppa) Complexed With Tri-
Lysine
pdb|1OLC|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With
Lys-Lys- Lys-Ala
pdb|1JEV|A Chain A, Oligo-peptide Binding Protein (oppa) Complexed With Kwk
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
pdb|1JEU|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kek
pdb|2RKM|A Chain A, Structure Of Oppa Complexed With Lys-Lys
pdb|1B32|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kmk
pdb|1B3F|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Khk
pdb|1B3G|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kik
pdb|1B3L|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3L|C Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B7H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Norleucyl-Lysine
pdb|1B0H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Napthylalanyl-Lysine
pdb|1B1H|A Chain A, Oligo-Peptide Binding ProteinTRIPEPTIDE (LYS HPE LYS)
Complex
pdb|1B2H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Ornithyl-Lysine
pdb|1B3H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Cyclohexylalanyl-Lysine
pdb|1B4H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminobutyric Acid-Lysine
pdb|1B5H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Diaminopropanoic Acid-Lysine
pdb|1B6H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Norvalyl- Lysine
pdb|1B52|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
pdb|1B51|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ksk
pdb|1B5I|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
pdb|1B5J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kqk
pdb|1B46|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kpk
pdb|1B9J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Klk
pdb|1QKA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Krk
pdb|1QKB|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kvk
pdb|1B4Z|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kdk
pdb|1B58|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kyk
pdb|1B40|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kfk
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
pdb|1RKM|A Chain A, Structure Of Oppa
Length = 517
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 532 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDK---KYFYLI--LRGVINDIN 586
R+R+ E + +NNM + L + KEI N +VD Y+Y I + ND+
Sbjct: 235 RYRSGEIDM------TYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVR 288
Query: 587 FLRYDLSLIIDRSI 600
+R L L +DR I
Sbjct: 289 -VRTALKLALDRDI 301
>pdb|4FC2|A Chain A, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|B Chain B, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|C Chain C, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|D Chain D, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
Length = 521
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 205
+AG R ++ + A L K QN K ILKYN Y+ K DF L
Sbjct: 86 TAGSRWELI--QTALLNKFTRPQNLKDAILKYNVAYSKKWDFTAL 128
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 266 NLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLT--EKHCIQLKLDMMTKKNN 323
+L ENR+ ++D VT +A + KY G+ C T+T EK + KL M K N
Sbjct: 40 DLGIENRD------ATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPN 93
Query: 324 SSF-----GTNFTVSIEAAN 338
+ GT F +I N
Sbjct: 94 GTIRNILGGTVFREAIICKN 113
>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase
pdb|3UEL|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|B Chain B, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|C Chain C, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
Length = 588
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 205
+AG R ++ A L K QN K ILKYN Y+ K DF L
Sbjct: 143 TAGSRWELIQT--ALLNKFTRPQNLKDAILKYNVAYSKKWDFTAL 185
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 80 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 135
Query: 455 I 455
I
Sbjct: 136 I 136
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 49 ILGNKKHCLDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQK--WGYDEINLNCGCPSNRVQ 105
+L N+K NA+E PI F + G + + +A KI + G E+NL+C + Q
Sbjct: 83 VLKNQKE----NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQ 138
Query: 106 NGF-FGAI---------LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155
+ F A TKPL V + D V DI + +N + +
Sbjct: 139 LAYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMA------EILNQFPLT--Y 188
Query: 156 VGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIIN 210
V +V+S G FI A + +K + +K + N++ + PE++II
Sbjct: 189 VNSVNSIGNGLFIDPEAESVVIKPEDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248
Query: 211 GGIKTKKEIDLHL 223
GGI+T ++ HL
Sbjct: 249 GGIETGQDAFEHL 261
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 49 ILGNKKHCLDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQK--WGYDEINLNCGCPSNRVQ 105
+L N+K NA+E PI F + G + + +A KI + G E+NL+C + Q
Sbjct: 83 VLKNQKE----NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQ 138
Query: 106 NGF-FGAI---------LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155
+ F A TKPL V + D V DI + +N + +
Sbjct: 139 LAYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMA------EILNQFPLT--Y 188
Query: 156 VGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIIN 210
V +V+S G FI A + +K + +K + N++ + PE++II
Sbjct: 189 VNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248
Query: 211 GGIKTKKEIDLHL 223
GGI+T ++ HL
Sbjct: 249 GGIETGQDAFEHL 261
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 80 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 135
Query: 455 I 455
I
Sbjct: 136 I 136
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 49 ILGNKKHCLDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQK--WGYDEINLNCGCPSNRVQ 105
+L N+K NA+E PI F + G + + +A KI + G E+NL+C + Q
Sbjct: 83 VLKNQKE----NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQ 138
Query: 106 NGF-FGAI---------LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155
+ F A TKPL V + D V DI + +N + +
Sbjct: 139 LAYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMA------EILNQFPLT--Y 188
Query: 156 VGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIIN 210
V +V+S G FI A + +K + +K + N++ + PE++II
Sbjct: 189 VNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248
Query: 211 GGIKTKKEIDLHL 223
GGI+T ++ HL
Sbjct: 249 GGIETGQDAFEHL 261
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 79 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 134
Query: 455 I 455
I
Sbjct: 135 I 135
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 80 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 135
Query: 455 I 455
I
Sbjct: 136 I 136
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 510 EIIIFINHKN-KSLVNLIKNKTPRHRA--REFALQGIYQWLFNNMDVNLIETYIKEISNF 566
E++ +NHKN L + + T RH+ EF G + T ++E SN
Sbjct: 59 EVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGS------------LYTVLEEPSNA 106
Query: 567 YKVDKKYFYLILRGVINDINFLR 589
Y + + F ++LR V+ +N LR
Sbjct: 107 YGLPESEFLIVLRDVVGGMNHLR 129
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 80 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 135
Query: 455 I 455
I
Sbjct: 136 I 136
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 80 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 135
Query: 455 I 455
I
Sbjct: 136 I 136
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 49 ILGNKKHCLDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQK--WGYDEINLNCGCPSNRVQ 105
+L N+K NA+E PI F + G + + +A KI + G E+NL+C + Q
Sbjct: 83 VLKNQKE----NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQ 138
Query: 106 NGF-FGAI---------LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155
+ F A TKPL V + D V DI + +N + +
Sbjct: 139 LAYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMA------EILNQFPLT--Y 188
Query: 156 VGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIIN 210
V +V+S G FI A + +K + +K + N++ + PE++II
Sbjct: 189 VNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248
Query: 211 GGIKTKKEIDLHL 223
GGI+T ++ HL
Sbjct: 249 GGIETGQDAFEHL 261
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 153 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL---KYNFVYNLKKDFPELEI 207
R+ + G R ++H KK PK ++K IL +Y LK+D P +++
Sbjct: 116 RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 395 LTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIA 454
L KL S ICE + D T E+ ++ I PG ++ + ++Q ++ N+L A
Sbjct: 80 LAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT----ISDEALLQERQDNLLAA 135
Query: 455 I 455
I
Sbjct: 136 I 136
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 49 ILGNKKHCLDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQK--WGYDEINLNCGCPSNRVQ 105
+L N+K NA+E PI F + G + + +A KI + G E+NL+C + Q
Sbjct: 83 VLKNQKE----NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQ 138
Query: 106 NGF-FGAI---------LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155
+ F A TKPL V + D V DI + +N + +
Sbjct: 139 LAYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMA------EILNQFPLT--Y 188
Query: 156 VGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIIN 210
V +V+S G FI A + +K + +K + N++ + PE++II
Sbjct: 189 VNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT 248
Query: 211 GGIKTKKEIDLHL 223
GGI+T ++ HL
Sbjct: 249 GGIETGQDAFEHL 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,164,473
Number of Sequences: 62578
Number of extensions: 1142125
Number of successful extensions: 2860
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2784
Number of HSP's gapped (non-prelim): 87
length of query: 956
length of database: 14,973,337
effective HSP length: 108
effective length of query: 848
effective length of database: 8,214,913
effective search space: 6966246224
effective search space used: 6966246224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)