BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2378
(956 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q88KX0|DUSA_PSEPK tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain
KT2440) GN=dusA PE=3 SV=1
Length = 336
Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 174/243 (71%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q
Sbjct: 18 RRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQ 77
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD
Sbjct: 78 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRD 137
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+V +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP
Sbjct: 138 AVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPP 197
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y+ LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D
Sbjct: 198 LRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQL 257
Query: 250 YSN 252
+ +
Sbjct: 258 FGS 260
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/257 (54%), Positives = 192/257 (74%), Gaps = 7/257 (2%)
Query: 13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVG 71
+S+APMM+ TDRH R F RQ+TR++ LYTEM T QAIL G+++ L+F+ EE P+A Q+G
Sbjct: 13 LSVAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGDRQRLLNFSPEEKPVALQLG 72
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P+ LA+ A+I Q WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ C+ AM+ +V
Sbjct: 73 GDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAV 132
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
EI +TVKHRIGID +SY+ + FV V++AGC+ F VHAR A+L+ L+PK+NR IP L+
Sbjct: 133 EIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQRFTVHARKAWLQGLSPKENRTIPPLR 192
Query: 192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY- 250
Y VY LKKDFP+L I INGGI ++I HL+++D VM+GR AY+NP+L + D + Y
Sbjct: 193 YEDVYQLKKDFPQLLIEINGGITQTEQIQQHLSHVDAVMVGRAAYENPYLFATVDRDIYH 252
Query: 251 -SNLPQYKIPTRIDIIN 266
+NL +P+R +II
Sbjct: 253 KTNL----VPSRAEIIE 265
>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1
Length = 326
Score = 295 bits (756), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 182/245 (74%), Gaps = 2/245 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LAK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V
Sbjct: 66 GSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
++ +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 -SNLP 254
SN P
Sbjct: 246 GSNAP 250
>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusA
PE=3 SV=1
Length = 332
Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 1/243 (0%)
Query: 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
R+ S+APMM+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q
Sbjct: 14 RRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQ 73
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+G + P +LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D
Sbjct: 74 LGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLD 133
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+VEI +TVKHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P
Sbjct: 134 AVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPP 193
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
L+Y LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D
Sbjct: 194 LRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQL 253
Query: 250 YSN 252
+ +
Sbjct: 254 FGS 256
>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=dusA PE=3 SV=1
Length = 327
Score = 293 bits (751), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P +LA+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM
Sbjct: 68 LQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ V I +TVK RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYID 246
>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=dusA PE=3 SV=2
Length = 326
Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 182/256 (71%), Gaps = 3/256 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQLG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ P+ LA AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V
Sbjct: 66 GSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y Y LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D +
Sbjct: 186 DYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELF 245
Query: 251 SNLPQYKIPTRIDIIN 266
+ Q I R I+
Sbjct: 246 GS--QSPIKKRRQIVE 259
>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3
SV=1
Length = 327
Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
++S+APM++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
+ PK LA AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V
Sbjct: 66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+I +TVK RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L
Sbjct: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y Y +K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D
Sbjct: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241
>sp|Q8ZJ14|DUSA_YERPE tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1
Length = 345
Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 130/241 (53%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
Query: 7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPI 66
+Y ++ S+APM++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPV 75
Query: 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
A Q+G ++P+ LA AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKA
Sbjct: 76 ALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKA 135
Query: 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNR 185
MRD+V I +TVK RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR
Sbjct: 136 MRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENR 195
Query: 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
++P L Y VY LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++
Sbjct: 196 EVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQV 255
Query: 246 D 246
D
Sbjct: 256 D 256
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 290 bits (741), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 1/243 (0%)
Query: 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH 64
++ Y + SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEH
Sbjct: 6 HTVYPAYRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH 65
Query: 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
P+A Q+G ++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 125
Query: 125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQ 183
KAMRD V I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+
Sbjct: 126 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 185
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++
Sbjct: 186 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 245
Query: 244 NFD 246
D
Sbjct: 246 AVD 248
>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1
Length = 332
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3
SV=1
Length = 332
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ SIAPM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 14 RFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 73
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P +LA AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 74 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 133
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 134 SIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D
Sbjct: 194 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVD 249
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251
Query: 251 SN 252
+
Sbjct: 252 GS 253
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251
Query: 251 SN 252
+
Sbjct: 252 GS 253
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+ S+APM++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G
Sbjct: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71
Query: 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
++P LA+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V
Sbjct: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131
Query: 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
I +TVK RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L
Sbjct: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
Y VY LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251
Query: 251 SN 252
+
Sbjct: 252 GS 253
>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1
Length = 327
Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 178/239 (74%)
Query: 8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIA 67
+ + + S+APM++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A
Sbjct: 8 FYRGRFSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVA 67
Query: 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
Q+G ++P++L AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M
Sbjct: 68 LQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQM 127
Query: 128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
+ +V+I +TVK RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+I
Sbjct: 128 QSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREI 187
Query: 188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
P L Y VY LK+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQID 246
>sp|Q7VNV2|DUSA_HAEDU tRNA-dihydrouridine synthase A OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusA PE=3 SV=1
Length = 323
Score = 282 bits (722), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 183/264 (69%), Gaps = 2/264 (0%)
Query: 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEE 63
+++K+ + + ++APM++ T RHCR FHRQ ++ + LYTEM T AIL K L+++ E
Sbjct: 1 MHNKFYRGRFAVAPMLDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDLLEYDPAE 60
Query: 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
P+A Q+G ++P +LA AK++Q GY EINLN GCPS+RVQNG FGA LM LV+DC
Sbjct: 61 QPVALQLGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQNGMFGACLMANADLVADC 120
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
IKAM+D V+I +T+KHRIGID ++SY F+ DF+ + + FIVHAR A+L L+PK+
Sbjct: 121 IKAMQDVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYS-QDFIVHARKAWLSGLSPKE 179
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMS 243
NR+IP L Y VY LK+DFP+L I INGGIKT EI HL +DGVM+GREAY+NP L+
Sbjct: 180 NREIPPLDYERVYQLKRDFPQLNISINGGIKTIDEIKQHLTKVDGVMVGREAYQNPALLG 239
Query: 244 NFDLNYYSNLPQYKIPTRIDIINL 267
D + Q I RI + N+
Sbjct: 240 EIDQQLFDQ-NQPLITARIAVENM 262
>sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain
MR-1) GN=dusA PE=3 SV=1
Length = 335
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 179/245 (73%)
Query: 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
N+ +SK R SIAPM++ TDRH R F R ++ + LYTEM TT AIL + L +N
Sbjct: 5 NINDSKNLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQ 64
Query: 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
EEHP+A Q+G + P +LA+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+
Sbjct: 65 EEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVA 124
Query: 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
+C+ AM+ V+I +TVK RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+P
Sbjct: 125 ECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184
Query: 182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
K+NR+IP L Y+ VY LK+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++
Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYM 244
Query: 242 MSNFD 246
++ D
Sbjct: 245 LAQVD 249
>sp|Q884G7|DUSA_PSESM tRNA-dihydrouridine synthase A OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusA PE=3 SV=1
Length = 336
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 174/245 (71%), Gaps = 1/245 (0%)
Query: 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
R+ S+APMM+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A
Sbjct: 17 SRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLAL 76
Query: 69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
Q+G + LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMR
Sbjct: 77 QLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMR 136
Query: 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
D+V I +TVKHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP
Sbjct: 137 DAVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIP 196
Query: 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
L+Y+ V LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D
Sbjct: 197 PLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQ 256
Query: 249 YYSNL 253
+ ++
Sbjct: 257 LFGSV 261
>sp|Q8P3X4|DUSA_XANCP tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusA PE=3 SV=1
Length = 335
Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 168/236 (71%), Gaps = 1/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR+FHR + + LYTEM A++ G+++ + F+A EHP+A Q+
Sbjct: 14 RLSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVIHGDRQRLIGFDAVEHPLALQL 73
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM +
Sbjct: 74 GGSDPALLAQAAQIAQAWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVAAMCAA 133
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ +TVK R+G+DD + Y F+ V AG +VHARNA+LK L+PK+NR++P L
Sbjct: 134 TALPVTVKCRLGVDDDDDYAVFAGFIDQVVGAGAAMVVVHARNAWLKGLSPKENREVPPL 193
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
+Y++ Y LK++ P L +++NGGI + + HL + DGVMLGR AY +P+++ +
Sbjct: 194 RYDWAYRLKQERPALPVVLNGGIASVEASLAHLQHTDGVMLGRAAYHDPYVLHQLE 249
>sp|Q9PGB5|DUSA_XYLFA tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain 9a5c)
GN=dusA PE=3 SV=1
Length = 340
Score = 239 bits (611), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 170/237 (71%), Gaps = 2/237 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMMN TDR+CR+FHR + + LYTEM +A++ G+++ L F + E P+A Q+
Sbjct: 17 RLSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFASVEQPVALQL 76
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LAK+A+I WGY EINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM
Sbjct: 77 GGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVADCVAAMAAV 136
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPI 189
V + +TVK R+G+++ + Y FV VS A R +VHARNA+L+ L+PK+NR+IP
Sbjct: 137 VSVPVTVKCRLGVNEDDDYGRFAKFVDWVSRASSSRMIVVHARNAWLQGLSPKENREIPP 196
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
L+Y++VY LK++ PEL +++NGGI + + HL +DGVMLGR AY++P+++ FD
Sbjct: 197 LRYDWVYRLKRERPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDPYILHQFD 253
>sp|Q87AY2|DUSA_XYLFT tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1
Length = 332
Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMMN TDR+CR+FHR + + LYTEM +A++ G+++ L F + E P+A Q+
Sbjct: 17 RLSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFASVEQPVALQL 76
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G +EP LAK+A I WGY EINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM
Sbjct: 77 GGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQAGSFGACLMREPALVADCVAAMAAV 136
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
V + +TVK R+G+++ + Y FV V ++ R +VHARNA+L+ L+PK+NR+IP
Sbjct: 137 VSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLSPKENREIPP 196
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNF 245
L+Y++VY LK++ PEL +++NGGI + + HL +DGVMLGR AY++P+++ F
Sbjct: 197 LRYDWVYRLKRECPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDPYILHQF 252
>sp|Q8PFF8|DUSA_XANAC tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusA PE=3 SV=1
Length = 334
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 170/247 (68%), Gaps = 3/247 (1%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
++S+APMM+ TDRHCR+FHR + + LYTEM A++ G++ + F+ EHP+A Q+
Sbjct: 13 RLSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVIHGDRARLIGFDPVEHPLALQL 72
Query: 71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
G ++P LA++A I Q+WG+DEINLNCGCPS+RVQ G FGA LM +P LV++C+ AM +
Sbjct: 73 GGSDPALLAQAAAIAQEWGFDEINLNCGCPSDRVQAGRFGACLMREPALVAECVAAMCAA 132
Query: 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
+ ITVK R+G+DD + Y FV V +AG +VHARNA+LK L+PK+NR++P L
Sbjct: 133 THLPITVKCRLGVDDDDDYALFARFVDQVVAAGAAMVVVHARNAWLKGLSPKENREVPPL 192
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--LN 248
+Y++ Y LK++ P L +++NGGI + HL + DGVMLGR AY +P+++ D LN
Sbjct: 193 RYDWAYRLKQERPGLPVVLNGGIVAVEPAIAHLQHADGVMLGRAAYHDPYVLHCLDAALN 252
Query: 249 YYSNLPQ 255
P+
Sbjct: 253 QRPEQPR 259
>sp|P57615|Y550_BUCAI Oxygen-independent coproporphyrinogen-III oxidase-like protein
BU550 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU550 PE=3 SV=1
Length = 376
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/343 (42%), Positives = 185/343 (53%), Gaps = 32/343 (9%)
Query: 643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702
I E KY+E LL D E L +I NR I+TIFIGGGTPSL+ +T + LL IKK + KN
Sbjct: 34 IPENKYIEHLLRDFERDLSLINNRNINTIFIGGGTPSLLKNTSIKNLLNGIKKRKIISKN 93
Query: 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
I I++EANP T E + F Y GINR S+GIQ+FN+K L + RT++SK A AI +K
Sbjct: 94 IEISIEANPKTLEYQNFIQYKNSGINRFSLGIQTFNSKMLKKIERTYNSKDAMNAIIESK 153
Query: 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 822
+ +N NLDL+Y LP Q+L E + DL AIQ +P H+S Y LTIEPNT F+ + P
Sbjct: 154 KISDNINLDLMYGLPGQSLEEALSDLQIAIQCNPSHISWYQLTIEPNTVFYA-KKIQTPH 212
Query: 823 NDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKI-- 880
D M + LLK YK YEIS+YSK Y+ QHNLNYW FGDY+G KI
Sbjct: 213 QDVVFNMLIEGDKLLKKAGYKKYEISSYSKFNYQCQHNLNYWNFGDYIGIGCGSHGKITQ 272
Query: 881 -----------------------------EKKCLIFEFMLNALRLKDGFSPNLFFERTGI 911
K+ IFE+ +N RL F E T I
Sbjct: 273 KNGEIIRTIKNKNINDFLSGKYINSVYQVSKRDKIFEYFMNVFRLYKPIFKKHFRENTNI 332
Query: 912 NIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
IE ++ A + G L + T G+ FLN L +IFL
Sbjct: 333 EESFIEKNIQIAIQEGFLINQSDCWHTTKKGKNFLNSLLEIFL 375
>sp|P43899|Y463_HAEIN Oxygen-independent coproporphyrinogen-III oxidase-like protein
HI_0463 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=HI_0463 PE=3 SV=1
Length = 383
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 189/338 (55%), Gaps = 37/338 (10%)
Query: 642 NIDEKKYLEALLIDVELSLP----IILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
+I E+ Y+ LL D++ L I RK+H+IFIGGGTPSL S + YLLK IKK +
Sbjct: 33 DIPEQDYIYHLLQDLQADLQRFKDSIQQRKLHSIFIGGGTPSLFSAESIAYLLKEIKKQI 92
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
F+ NI ITLEANP T E E+F Y GI R+S+GIQSFN+ L LGR H++ +AK A
Sbjct: 93 DFEDNIEITLEANPGTVEAERFKGYVSAGIMRISMGIQSFNDDKLQRLGRIHNAAEAKSA 152
Query: 758 IEIAK-QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816
+ +AK +FNLDL++ LPNQTL E + DL AI+ SPPH+S Y LTIEPNT F Y
Sbjct: 153 VNLAKVSGLKSFNLDLMHGLPNQTLEEALDDLRQAIELSPPHISWYQLTIEPNT-MFAYR 211
Query: 817 PLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYL------ 870
P +P +D + ++ LL Y+ YE SAY+K G++ +HNLNYW+FGDYL
Sbjct: 212 PPKLPDDDALWDIFEQGHQLLTMAGYQQYETSAYAKAGFQCKHNLNYWRFGDYLAIGCGA 271
Query: 871 -------------------------GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLF 905
G + + K + K FEF +N RL + F
Sbjct: 272 HGKLTFPTGEITRFSKTKHPKGYLRGEYLYEEKNVPKIDRPFEFFMNRFRLLEAVPKQEF 331
Query: 906 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 943
+ TG++ +++++ A + + N + + T G+
Sbjct: 332 EDYTGLSQSAVKNQIDFAIQQNYIVENADSWQITEHGK 369
>sp|P52062|YGGW_ECOLI Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
OS=Escherichia coli (strain K12) GN=yggW PE=3 SV=1
Length = 378
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 190/364 (52%), Gaps = 38/364 (10%)
Query: 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS 682
K PY + A++ G + Y++ LL D++ + R++ TIFIGGGTPSL+S
Sbjct: 19 KCPYCDFNSHALK-----GEVPHDDYVQHLLNDLDNDVAYAQGREVKTIFIGGGTPSLLS 73
Query: 683 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742
+ LL ++ L + IT+EANP T E ++F Y G+NR+SIG+QSF+ + L
Sbjct: 74 GPAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNRISIGVQSFSEEKL 133
Query: 743 NILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 801
LGR H ++AK A ++A +FNLDL++ LP+Q+L E + DL AI+ +PPHLS
Sbjct: 134 KRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQSLEEALGDLRQAIELNPPHLSW 193
Query: 802 YSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNL 861
Y LTIEPNT F PP+ +P +D + ++ LL Y+ YE SAY+K GY+ QHNL
Sbjct: 194 YQLTIEPNTLFGSRPPV-LPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNL 252
Query: 862 NYWKFGDYL-------------------------------GNSIAKSKKIEKKCLIFEFM 890
NYW+FGDY+ G + + +E FEF
Sbjct: 253 NYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQGRYLESQRDVEATDKPFEFF 312
Query: 891 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 950
+N RL + F TG+ +I +L A G L + T G+ FLN L
Sbjct: 313 MNRFRLLEAAPRVEFIAYTGLCEDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLL 372
Query: 951 QIFL 954
++FL
Sbjct: 373 ELFL 376
>sp|Q9JU97|RIBB_NEIMA 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ribB PE=3 SV=1
Length = 363
Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 140/178 (78%), Gaps = 2/178 (1%)
Query: 247 LNYYSNLPQYKIPTRID--IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMT 304
+++ S +P+ ++ +I D+E+RENEGD+++++ FVTP AINFM K+ARGL+C+
Sbjct: 1 MSHISPIPEILADIKVGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLP 60
Query: 305 LTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPS 364
+ + +L L MMT+KN + +GTNFTVSIEAA+G+TTGISA+DRA TI+ A S AKP
Sbjct: 61 MDGEMVEKLGLPMMTQKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPE 120
Query: 365 DIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
DIVQPGHIFPL+A+KGGVL+R GHTEAG DL ++ GL P+AVICEI+NDDGTMAR E
Sbjct: 121 DIVQPGHIFPLRAQKGGVLVRAGHTEAGVDLAQMNGLIPAAVICEIINDDGTMARMPE 178
>sp|Q9JZ77|RIBB_NEIMB 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ribB PE=3 SV=1
Length = 363
Score = 226 bits (577), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 102/159 (64%), Positives = 131/159 (82%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I D+E+RENEGD+++++ FVTP AINFM K+ARGL+C+ + + +L L MMT+KN
Sbjct: 20 VIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMTQKNG 79
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
+ +GTNFTVSIEAA+G+TTGISA+DRA TI+ A S AKP DIVQPGHIFPL+A+KGGVL
Sbjct: 80 AQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGGVL 139
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
+R GHTEAG DL ++ GL P++VICEI+NDDGTMAR E
Sbjct: 140 VRAGHTEAGVDLAQMNGLIPASVICEIINDDGTMARMPE 178
>sp|Q8K928|Y532_BUCAP Oxygen-independent coproporphyrinogen-III oxidase-like protein
BUsg_532 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_532 PE=3 SV=1
Length = 376
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 201/349 (57%), Gaps = 34/349 (9%)
Query: 638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697
KSF I EK+Y++ LL D+E L +I R+I++IFIGGGTPSL+ + + +++ IKK +
Sbjct: 31 KSF--IPEKEYIDHLLKDLEKDLSLIKEREINSIFIGGGTPSLLKSSSIKKMMREIKKRI 88
Query: 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
IT+EANP+T E ++F +Y GINR SIG+Q+FN+ L + RT++ ++A A
Sbjct: 89 NISNTAEITIEANPTTLEYKRFFNYKKSGINRFSIGVQTFNSDLLKKIERTYNKREAILA 148
Query: 758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
+E K+ NFNLD++Y LPNQ+L +++LDL YA++Y+P H+S Y LT+EPNT F+
Sbjct: 149 VEEIKKINKNFNLDIMYGLPNQSLKDVLLDLQYAVKYNPTHISWYQLTLEPNTPFY-VKK 207
Query: 818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKS 877
L++P+ + M + LK + YK YEIS+Y+K YE QHNLNYW FGDY+G +
Sbjct: 208 LNLPNENNIFKMLVEGEKFLKQSGYKKYEISSYAKLNYECQHNLNYWNFGDYIGIGCSAH 267
Query: 878 KKIE-------------------------------KKCLIFEFMLNALRLKDGFSPNLFF 906
KI KK FE+ +N RL F
Sbjct: 268 GKITQINGDIIRTIKNKNINDFMNGKYLKHKNFVLKKDKPFEYFMNIFRLYKPVLKRQFE 327
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955
ERT IN I+ K+K A + G LK T G+ FLN L +IFL+
Sbjct: 328 ERTNINQNYIKEKIKKAIEKGYLKNKIDFWDTTKKGKMFLNSLLKIFLD 376
>sp|P51962|RIBB_PHOPO 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium
phosphoreum GN=ribB PE=3 SV=1
Length = 363
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 123/156 (78%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I++SD VTP AINFM+ Y RGLIC+TL ++ C+QL+L MM K N
Sbjct: 19 VILMDDEDRENEGDLIIASDKVTPEAINFMATYGRGLICLTLNKERCLQLELPMMVKSNT 78
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
F T FT+SIEAA+GVTTGIS +DRA T++ A + A DIV PGHIFPL A+ GGVL
Sbjct: 79 DKFATPFTISIEAASGVTTGISVNDRARTVQAAIAATATAKDIVMPGHIFPLMAQDGGVL 138
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
R GHTEAGCD+ +LAGL PS+VI EILNDDGTMAR
Sbjct: 139 ARAGHTEAGCDVARLAGLEPSSVIVEILNDDGTMAR 174
>sp|Q882G0|RIBB_PSESM 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ribB PE=3 SV=1
Length = 369
Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 95/156 (60%), Positives = 123/156 (78%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ +D E+RENEGD++L++D T AI+FM++ ARGLIC+TLT++HC L L+ M N
Sbjct: 19 VLLVDDEDRENEGDLLLAADCCTAQAISFMAREARGLICLTLTDEHCKSLGLEQMVPSNG 78
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S F T FTVSIEA GVTTGISA+DRA T++ A + A P D+VQPGHIFPL+A+ GGVL
Sbjct: 79 SVFATAFTVSIEATTGVTTGISAADRARTVQAAVNPGAVPDDLVQPGHIFPLRARDGGVL 138
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
R GHTEAGCDL ++AG TP++VI E++NDDGTMAR
Sbjct: 139 TRAGHTEAGCDLARMAGFTPASVIVEVMNDDGTMAR 174
>sp|Q02008|RIBB_PHOLE 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium
leiognathi GN=ribB PE=3 SV=1
Length = 364
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 123/156 (78%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I++S+ VTP AINFM+ + RGLIC+TL++ C L L +M + NN
Sbjct: 19 VILMDDESRENEGDLIIASEMVTPEAINFMATHGRGLICLTLSKARCKTLNLPLMVQGNN 78
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
+F T FT+SIEAA VTTGISASDRA T+ A + AK +DIV PGHIFPL A+ GGVL
Sbjct: 79 DNFSTPFTISIEAAKYVTTGISASDRAKTVLAAVAPNAKSTDIVMPGHIFPLMAQDGGVL 138
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
IR GHTEAGCD+ +LAGL PS+VI EILN+DG+MAR
Sbjct: 139 IRAGHTEAGCDVARLAGLEPSSVIVEILNEDGSMAR 174
>sp|Q9HWX4|RIBB_PSEAE 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ribB PE=3 SV=1
Length = 365
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 154/248 (62%), Gaps = 23/248 (9%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I++++ V INFM K+ARGL+CM +T + C +L L +M ++N
Sbjct: 19 VILMDDEDRENEGDLIMAAECVRTEDINFMVKHARGLVCMPMTRERCERLGLPLMVQRNG 78
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S FGT FTVSIEAA GVTTGISA+DRA T++ A++K A +DIV PGHIFPL A+ GG L
Sbjct: 79 SGFGTKFTVSIEAAEGVTTGISAADRARTVQAAAAKNAVAADIVSPGHIFPLMAQPGGTL 138
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNI 443
R GHTEA CDL ++AG PS VICE++NDDG+MAR E LE A ++
Sbjct: 139 ARAGHTEAACDLARMAGFEPSGVICEVMNDDGSMARRPE-----------LE-AFAAEHG 186
Query: 444 IQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQANS 503
I+I LI H+ LI T+ I + + + + N I +++E
Sbjct: 187 IKIGTIADLI-----------HYRLIHERTVERIAEQPLDSELGHFNLITYRDSVEGDVH 235
Query: 504 RILTKGEI 511
LT G++
Sbjct: 236 LALTLGKV 243
>sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain
VF5) GN=ribBA PE=3 SV=1
Length = 406
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D +RENEGD++++++ VTP AINFM+KY RGLIC++LT + C QL L MT N
Sbjct: 25 VIVVDDPDRENEGDLVMAAEKVTPEAINFMAKYGRGLICLSLTPERCEQLDLHPMTPMNT 84
Query: 324 SSFGTNFTVSIEA--ANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGG 381
GT F VSI+A +G TTGISA DRA TIK+A S AKPSD V+PGH+FPL+A+ GG
Sbjct: 85 DPKGTYFCVSIDAHPKHGTTTGISAYDRALTIKLAISPDAKPSDFVRPGHVFPLKARPGG 144
Query: 382 VLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
VL R GHTEA DL +LAGL P+ VICEI+ DDGTMAR +
Sbjct: 145 VLERAGHTEASVDLARLAGLYPAGVICEIMKDDGTMARVPD 185
>sp|A7MP95|RIBB_CROS8 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=ribB PE=3 SV=1
Length = 217
Score = 193 bits (490), Expect = 7e-48, Method: Composition-based stats.
Identities = 88/159 (55%), Positives = 118/159 (74%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD ENRENEGD+I +++ +T + ++ G++C+ LTE+ QL L MM + N
Sbjct: 29 VMVLDDENRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S+FGT FTV+IEAA+GVTTG+SA+DR TI+ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAFGTGFTVTIEAAHGVTTGVSAADRITTIRAAIADDAKPSDLHRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLVSLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|Q8D2W5|RIBB_WIGBR 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Wigglesworthia
glossinidia brevipalpis GN=ribB PE=3 SV=1
Length = 213
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 116/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
I+ LD ENRENEGD+I +++ +T N + ++ G++C+ LT++ C L L MM KKNN
Sbjct: 29 ILVLDDENRENEGDMIFAAENMTVNQMALAIRFGSGIVCICLTKEKCKILNLPMMVKKNN 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S + T FTVSIE+A G+TTG+SA DR TIK A AKP D+ +PGH+FPLQA GG+L
Sbjct: 89 SKYKTAFTVSIESAYGITTGVSAYDRIITIKTAIKDNAKPDDLNRPGHVFPLQAHPGGIL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
R GHTEA DLTKLAGL P+ VICE++NDDG+MAR E
Sbjct: 149 SRAGHTEAAVDLTKLAGLKPAGVICEVMNDDGSMARMPE 187
>sp|C4K8P2|RIBB_HAMD5 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Hamiltonella
defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=ribB
PE=3 SV=1
Length = 218
Score = 192 bits (487), Expect = 1e-47, Method: Composition-based stats.
Identities = 88/159 (55%), Positives = 118/159 (74%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD ENRENEGD + +++ +T + ++ G++C+ LTE+ C QL+L MM +KN+
Sbjct: 29 VMVLDDENRENEGDFVFAAETMTVEQMALTIRHGSGIVCLCLTEERCQQLELPMMVEKNS 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S+F T FTVSIEAA GVTTG+SASDR TIK A S+ AKP+D+ +PGH+FPL+ GVL
Sbjct: 89 STFQTPFTVSIEAAKGVTTGVSASDRITTIKAAISQTAKPADLHRPGHVFPLKGHPKGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
R GHTEA DL +LAGL P+ V+CE+ ND+GTMARA E
Sbjct: 149 GRSGHTEAAIDLARLAGLKPAGVLCELTNDNGTMARAPE 187
>sp|A6TE29|RIBB_KLEP7 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=ribB PE=3 SV=1
Length = 217
Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 117/159 (73%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I +++ +T + ++ G++C+ LTE+ QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIADGAKPSDLNRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLVTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|P74104|RIBBA_SYNY3 Riboflavin biosynthesis protein RibBA OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribBA PE=3 SV=1
Length = 556
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ +D ENRENEGD+I ++ F TP +NFM+ ARGLIC+ +T +L L +M KN
Sbjct: 18 VVVVDDENRENEGDLICAAQFATPALVNFMAVEARGLICLAMTGDRLDELDLPLMVSKNT 77
Query: 324 SSFGTNFTVSIEAAN--GVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGG 381
S T FTVSI+AA GVTTGISA DRA TI++A + +P D+ +PGHIFPL+AK GG
Sbjct: 78 DSNQTAFTVSIDAAPHLGVTTGISAEDRARTIQIAINPVTRPEDLSRPGHIFPLRAKTGG 137
Query: 382 VLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
VL R GHTEA DL++LAGL P+ VICEI N DG+MAR E
Sbjct: 138 VLKRAGHTEAAVDLSRLAGLYPAGVICEIQNADGSMARLPE 178
>sp|B5XU43|RIBB_KLEP3 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Klebsiella
pneumoniae (strain 342) GN=ribB PE=3 SV=1
Length = 217
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 116/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I +++ +T + ++ G++C+ LTE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIADGAKPSDLNRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLVTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|C6D9P9|RIBB_PECCP 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=ribB PE=3
SV=1
Length = 217
Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats.
Identities = 87/159 (54%), Positives = 118/159 (74%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I S++ +T + ++ G++C+ LTE+ QL+L MM +KN+
Sbjct: 29 VLVLDDEDRENEGDMIFSAENMTVEQMALTIRHGSGIVCLCLTEERRQQLELPMMVEKNS 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S + T FTV+IEAA GVTTG+SA+DR TI+ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SHYQTAFTVTIEAAEGVTTGVSAADRLTTIRAAIADNAKPSDLNRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAGL PS V+CE+ NDDG+MA A E
Sbjct: 149 TRGGHTEATVDLMTLAGLKPSGVLCELTNDDGSMAHAPE 187
>sp|Q7N0C8|RIBB_PHOLL 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=ribB PE=3
SV=1
Length = 217
Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 117/159 (73%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD+E+RENEGDII +++ +T + +Y G++C+ LTE+ QL+L MM + N+
Sbjct: 29 VMVLDNEDRENEGDIIFAAETMTVEQMALTIRYGSGIVCLCLTEERRQQLQLPMMVENNS 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S F T FTV+IEAA GVTTG+SA+DR TI+ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SPFQTAFTVTIEAAQGVTTGVSAADRITTIRAAIADNAKPSDLNRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
+R GHTEA DL LAG P+ V+CE+ NDDG+MAR E
Sbjct: 149 VRQGHTEAAIDLVSLAGFKPAGVLCELTNDDGSMARTLE 187
>sp|Q6D8S3|RIBB_ERWCT 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=ribB PE=3 SV=1
Length = 217
Score = 187 bits (474), Expect = 4e-46, Method: Composition-based stats.
Identities = 86/159 (54%), Positives = 118/159 (74%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I S++ +T + ++ G++C+ LTE+ QL+L MM +KN+
Sbjct: 29 VLVLDDEDRENEGDMIFSAESMTVEQMALTIRHGSGIVCLCLTEERRQQLELPMMVEKNS 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S + T FTV+IEAA GVTTG+SA+DR TI+ A + A+PSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SHYQTAFTVTIEAAEGVTTGVSAADRLTTIRAAIADNARPSDLNRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAGL PS V+CE+ NDDG+MA A E
Sbjct: 149 TRGGHTEATVDLMTLAGLKPSGVLCELTNDDGSMAHAPE 187
>sp|B4EW41|RIBB_PROMH 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Proteus mirabilis
(strain HI4320) GN=ribB PE=3 SV=1
Length = 217
Score = 187 bits (474), Expect = 5e-46, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD ENRENEGD++ ++ +T + ++ G++C+ +TE+ QL L MM + N
Sbjct: 29 VMVLDDENRENEGDMVFVAETMTTEQMAMSIRHGSGIVCVCITEERRQQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S F T FTV+IEAA GVTTG+SA+DR T++ A++ AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SHFHTAFTVTIEAAQGVTTGVSAADRLTTVRAAAADNAKPSDLNRPGHVFPLRAQPGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P AV+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEASIDLATLAGFKPVAVLCELTNDDGTMARAPE 187
>sp|B5BG06|RIBB_SALPK 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella
paratyphi A (strain AKU_12601) GN=ribB PE=3 SV=1
Length = 217
Score = 186 bits (473), Expect = 5e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 114/159 (71%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAEIMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|Q5PMU5|RIBB_SALPA 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=ribB PE=3
SV=1
Length = 217
Score = 186 bits (473), Expect = 5e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 114/159 (71%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAEIMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|A4WEI2|RIBB_ENT38 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Enterobacter sp.
(strain 638) GN=ribB PE=3 SV=1
Length = 217
Score = 186 bits (473), Expect = 6e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 117/159 (73%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I +++ +T + ++ G++C+ + E+ QL L MM + N
Sbjct: 29 VMVLDDEHRENEGDMIFAAENMTVEQMALTIRHGSGIVCLCINEERRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S+FGT FTV+IEAA+GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAFGTGFTVTIEAAHGVTTGVSAADRLTTVRAAIADGAKPSDLHRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATLDLVTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|B1LF38|RIBB_ECOSM 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=ribB PE=3 SV=1
Length = 217
Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADDAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|B7ND35|RIBB_ECOLU 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=ribB PE=3 SV=1
Length = 217
Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADDAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|Q3YXK0|RIBB_SHISS 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shigella sonnei
(strain Ss046) GN=ribB PE=3 SV=1
Length = 217
Score = 186 bits (471), Expect = 9e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
>sp|P0A7J2|RIBB_SHIFL 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shigella flexneri
GN=ribB PE=3 SV=1
Length = 217
Score = 186 bits (471), Expect = 9e-46, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVL 148
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
RGGHTEA DL LAG P+ V+CE+ NDDGTMARA E
Sbjct: 149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,331,938
Number of Sequences: 539616
Number of extensions: 15108110
Number of successful extensions: 40526
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 38647
Number of HSP's gapped (non-prelim): 1760
length of query: 956
length of database: 191,569,459
effective HSP length: 127
effective length of query: 829
effective length of database: 123,038,227
effective search space: 101998690183
effective search space used: 101998690183
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)