Query psy2378
Match_columns 956
No_of_seqs 926 out of 6787
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:27:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06582 coproporphyrinogen II 100.0 1.7E-58 3.8E-63 524.7 33.6 333 622-955 16-390 (390)
2 TIGR00742 yjbN tRNA dihydrouri 100.0 3.1E-58 6.7E-63 505.7 27.6 296 11-319 1-297 (318)
3 PRK07379 coproporphyrinogen II 100.0 5.8E-57 1.2E-61 515.6 33.6 333 619-954 13-393 (400)
4 PRK09057 coproporphyrinogen II 100.0 8E-57 1.7E-61 512.0 34.3 332 622-955 9-380 (380)
5 COG0635 HemN Coproporphyrinoge 100.0 1.4E-56 3E-61 510.0 33.9 333 622-955 39-411 (416)
6 PRK08898 coproporphyrinogen II 100.0 1.5E-55 3.2E-60 503.5 36.0 334 619-954 22-393 (394)
7 PRK05660 HemN family oxidoredu 100.0 1.1E-55 2.3E-60 502.0 34.5 333 622-955 11-377 (378)
8 PRK06294 coproporphyrinogen II 100.0 2.4E-55 5.2E-60 497.7 33.1 325 619-954 9-370 (370)
9 PRK11815 tRNA-dihydrouridine s 100.0 1.2E-55 2.6E-60 491.3 28.8 306 2-320 2-308 (333)
10 COG0042 tRNA-dihydrouridine sy 100.0 7.3E-56 1.6E-60 488.0 26.4 293 2-317 3-301 (323)
11 PRK09058 coproporphyrinogen II 100.0 6.1E-55 1.3E-59 505.6 32.8 333 619-955 64-437 (449)
12 PRK05904 coproporphyrinogen II 100.0 2.4E-54 5.3E-59 484.5 31.3 319 622-954 11-353 (353)
13 PRK05628 coproporphyrinogen II 100.0 5.4E-54 1.2E-58 489.5 33.1 326 622-954 7-374 (375)
14 PRK05799 coproporphyrinogen II 100.0 9.7E-54 2.1E-58 487.9 33.4 329 622-954 8-373 (374)
15 PRK08446 coproporphyrinogen II 100.0 2.7E-53 5.9E-58 477.8 30.7 318 622-955 5-350 (350)
16 PRK08599 coproporphyrinogen II 100.0 5.3E-53 1.1E-57 482.1 33.3 333 622-955 6-375 (377)
17 PRK10550 tRNA-dihydrouridine s 100.0 8.6E-54 1.9E-58 469.9 25.6 284 12-322 2-299 (312)
18 PRK10415 tRNA-dihydrouridine s 100.0 2.1E-53 4.5E-58 470.9 26.0 300 1-322 1-305 (321)
19 TIGR00539 hemN_rel putative ox 100.0 1.9E-52 4.2E-57 473.8 32.7 322 622-944 5-360 (360)
20 PRK08208 coproporphyrinogen II 100.0 1.6E-51 3.6E-56 475.4 34.4 331 622-955 44-417 (430)
21 PF01207 Dus: Dihydrouridine s 100.0 1E-52 2.3E-57 463.4 12.2 251 14-277 1-256 (309)
22 COG0108 RibB 3,4-dihydroxy-2-b 100.0 1.4E-52 3.1E-57 411.8 9.5 166 270-436 25-197 (203)
23 PRK13347 coproporphyrinogen II 100.0 2.5E-49 5.3E-54 460.3 34.3 334 619-953 53-438 (453)
24 PRK08629 coproporphyrinogen II 100.0 1.7E-48 3.7E-53 447.7 33.1 324 619-955 55-415 (433)
25 PRK09249 coproporphyrinogen II 100.0 3.1E-48 6.7E-53 451.5 33.9 334 622-955 54-440 (453)
26 TIGR00737 nifR3_yhdG putative 100.0 7.4E-49 1.6E-53 437.0 26.1 298 3-322 1-303 (319)
27 TIGR00538 hemN oxygen-independ 100.0 5.6E-48 1.2E-52 450.0 34.1 335 619-954 52-439 (455)
28 KOG2335|consensus 100.0 5.8E-48 1.3E-52 410.6 20.9 240 14-275 22-266 (358)
29 PRK00910 ribB 3,4-dihydroxy-2- 100.0 4.8E-49 1E-53 398.6 10.8 168 270-437 36-210 (218)
30 PRK01792 ribB 3,4-dihydroxy-2- 100.0 5E-49 1.1E-53 397.4 10.0 166 270-435 35-207 (214)
31 PRK00014 ribB 3,4-dihydroxy-2- 100.0 1.7E-48 3.8E-53 395.3 11.0 166 270-435 40-212 (230)
32 PF00926 DHBP_synthase: 3,4-di 100.0 8.6E-48 1.9E-52 386.8 8.4 164 270-433 20-190 (194)
33 TIGR00506 ribB 3,4-dihydroxy-2 100.0 1.7E-47 3.7E-52 384.8 9.8 164 270-433 24-195 (199)
34 PRK09314 bifunctional 3,4-dihy 100.0 5.5E-47 1.2E-51 409.3 7.2 175 270-445 25-206 (339)
35 PRK12485 bifunctional 3,4-dihy 100.0 9.8E-46 2.1E-50 407.0 13.7 230 270-517 25-294 (369)
36 PRK08207 coproporphyrinogen II 100.0 1.3E-42 2.9E-47 402.5 31.6 261 619-880 166-448 (488)
37 cd02801 DUS_like_FMN Dihydrour 100.0 4.5E-43 9.7E-48 374.4 22.4 223 12-247 1-228 (231)
38 PRK03353 ribB 3,4-dihydroxy-2- 100.0 1.1E-43 2.3E-48 364.5 10.8 170 270-439 35-211 (217)
39 PRK09319 bifunctional 3,4-dihy 100.0 3.8E-43 8.2E-48 397.5 13.5 249 270-527 27-309 (555)
40 PRK05773 3,4-dihydroxy-2-butan 100.0 2.4E-43 5.1E-48 358.8 9.3 159 270-432 22-212 (219)
41 KOG2333|consensus 100.0 5.1E-42 1.1E-46 369.9 20.0 298 4-317 259-567 (614)
42 PRK09311 bifunctional 3,4-dihy 100.0 5.9E-43 1.3E-47 391.9 9.3 239 270-517 26-294 (402)
43 PLN02831 Bifunctional GTP cycl 100.0 2.5E-42 5.5E-47 388.5 8.6 239 270-517 57-328 (450)
44 PRK14019 bifunctional 3,4-dihy 100.0 1.5E-41 3.3E-46 375.6 8.2 241 270-519 25-295 (367)
45 PRK09318 bifunctional 3,4-dihy 100.0 2.2E-41 4.7E-46 374.2 6.0 228 270-517 19-276 (387)
46 cd02911 arch_FMN Archeal FMN-b 100.0 1.2E-37 2.5E-42 329.0 18.9 211 12-246 1-232 (233)
47 cd04734 OYE_like_3_FMN Old yel 100.0 1.1E-32 2.3E-37 308.7 19.9 244 2-247 6-330 (343)
48 TIGR01037 pyrD_sub1_fam dihydr 100.0 3.4E-32 7.3E-37 301.4 20.4 233 3-249 5-280 (300)
49 TIGR00736 nifR3_rel_arch TIM-b 100.0 3.8E-32 8.3E-37 283.2 19.1 160 62-238 66-226 (231)
50 PLN02404 6,7-dimethyl-8-ribity 100.0 4.5E-33 9.8E-38 264.8 9.9 106 414-524 27-137 (141)
51 PRK13523 NADPH dehydrogenase N 100.0 3.2E-32 7E-37 302.9 17.9 243 2-251 8-324 (337)
52 COG0054 RibH Riboflavin syntha 100.0 1.4E-32 3.1E-37 260.3 9.6 101 421-526 44-144 (152)
53 TIGR00114 lumazine-synth 6,7-d 100.0 3.6E-32 7.9E-37 259.3 9.6 114 407-526 14-132 (138)
54 PRK12419 riboflavin synthase s 100.0 4.4E-32 9.5E-37 261.7 8.2 112 414-527 30-146 (158)
55 cd04733 OYE_like_2_FMN Old yel 100.0 2E-30 4.3E-35 291.2 19.1 244 2-247 6-337 (338)
56 cd02931 ER_like_FMN Enoate red 100.0 4E-30 8.6E-35 291.9 19.9 244 2-247 6-350 (382)
57 cd04747 OYE_like_5_FMN Old yel 100.0 9.6E-30 2.1E-34 284.2 19.4 236 2-248 6-344 (361)
58 KOG3243|consensus 100.0 7.9E-31 1.7E-35 235.1 8.2 102 419-524 47-148 (158)
59 cd02933 OYE_like_FMN Old yello 100.0 1.5E-29 3.3E-34 282.3 19.9 232 2-247 7-329 (338)
60 PRK00061 ribH 6,7-dimethyl-8-r 100.0 1.2E-30 2.7E-35 253.9 9.7 99 421-524 44-142 (154)
61 cd04735 OYE_like_4_FMN Old yel 100.0 8.2E-30 1.8E-34 287.2 17.3 238 2-247 6-328 (353)
62 KOG2334|consensus 100.0 1.1E-29 2.4E-34 272.1 17.0 261 2-288 3-287 (477)
63 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 8.1E-30 1.8E-34 287.7 16.9 242 2-247 6-321 (353)
64 cd04740 DHOD_1B_like Dihydroor 100.0 4.6E-29 1E-33 276.0 22.6 229 3-249 4-277 (296)
65 cd02929 TMADH_HD_FMN Trimethyl 100.0 2E-29 4.3E-34 285.0 19.3 241 2-247 13-334 (370)
66 cd02803 OYE_like_FMN_family Ol 100.0 2.5E-29 5.3E-34 282.4 18.2 244 2-247 5-326 (327)
67 cd02932 OYE_YqiM_FMN Old yello 100.0 6.7E-29 1.5E-33 278.8 19.1 239 2-247 6-335 (336)
68 COG1902 NemA NADH:flavin oxido 100.0 1.2E-28 2.7E-33 273.9 20.2 241 2-248 11-334 (363)
69 PF00885 DMRL_synthase: 6,7-di 100.0 6.3E-29 1.4E-33 240.5 12.2 100 420-524 34-133 (144)
70 cd02940 DHPD_FMN Dihydropyrimi 100.0 6.1E-28 1.3E-32 266.3 17.2 176 63-248 99-298 (299)
71 PRK07259 dihydroorotate dehydr 99.9 1E-26 2.2E-31 257.7 23.6 229 4-249 7-280 (301)
72 TIGR01506 ribC_arch riboflavin 99.9 3.1E-28 6.6E-33 232.5 9.2 97 423-527 29-125 (151)
73 PF00724 Oxidored_FMN: NADH:fl 99.9 1.4E-27 3.1E-32 268.0 16.0 244 2-247 7-336 (341)
74 PRK08255 salicylyl-CoA 5-hydro 99.9 9.8E-27 2.1E-31 287.5 20.4 243 1-249 403-734 (765)
75 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 3E-26 6.5E-31 252.8 21.7 234 3-247 3-288 (289)
76 PRK10605 N-ethylmaleimide redu 99.9 2.5E-26 5.4E-31 258.5 19.5 232 2-247 8-336 (362)
77 PLN02411 12-oxophytodienoate r 99.9 4E-26 8.7E-31 259.1 18.9 240 2-247 17-357 (391)
78 TIGR01212 radical SAM protein, 99.9 3.7E-25 8.1E-30 243.9 19.9 193 630-825 39-239 (302)
79 KOG1284|consensus 99.9 5.2E-27 1.1E-31 245.6 4.5 165 269-433 84-260 (357)
80 PRK08318 dihydropyrimidine deh 99.9 1.9E-25 4.1E-30 258.5 17.0 176 63-249 99-300 (420)
81 cd04741 DHOD_1A_like Dihydroor 99.9 1.9E-24 4.1E-29 237.4 21.6 234 3-249 3-290 (294)
82 TIGR01211 ELP3 histone acetylt 99.9 2.2E-24 4.8E-29 250.3 22.6 170 667-837 136-333 (522)
83 TIGR02026 BchE magnesium-proto 99.9 7.3E-25 1.6E-29 258.3 15.1 223 624-855 200-424 (497)
84 PRK14335 (dimethylallyl)adenos 99.9 1.7E-23 3.7E-28 243.6 19.6 188 624-816 159-359 (455)
85 TIGR01579 MiaB-like-C MiaB-lik 99.9 1.1E-23 2.3E-28 243.7 17.4 186 623-816 144-339 (414)
86 PRK14332 (dimethylallyl)adenos 99.9 2.1E-23 4.6E-28 241.6 19.2 187 622-816 159-353 (449)
87 PRK14327 (dimethylallyl)adenos 99.9 2.4E-23 5.2E-28 242.6 19.6 187 621-816 216-413 (509)
88 PRK14340 (dimethylallyl)adenos 99.9 1.3E-23 2.8E-28 243.4 17.0 185 622-814 154-347 (445)
89 PRK14331 (dimethylallyl)adenos 99.9 1.3E-23 2.8E-28 244.1 16.7 187 622-816 151-346 (437)
90 PRK14329 (dimethylallyl)adenos 99.9 3.4E-23 7.3E-28 241.6 19.8 186 622-815 173-373 (467)
91 cd04738 DHOD_2_like Dihydrooro 99.9 4.9E-23 1.1E-27 229.8 19.6 228 4-248 44-326 (327)
92 PRK14330 (dimethylallyl)adenos 99.9 2.9E-23 6.3E-28 241.1 17.4 187 622-815 145-340 (434)
93 COG0621 MiaB 2-methylthioadeni 99.9 3.6E-23 7.9E-28 232.9 17.0 186 620-815 147-345 (437)
94 PRK14325 (dimethylallyl)adenos 99.9 5.9E-23 1.3E-27 239.4 18.9 205 624-838 154-370 (444)
95 PRK14334 (dimethylallyl)adenos 99.9 5.8E-23 1.3E-27 238.6 18.4 185 620-816 141-338 (440)
96 PRK14339 (dimethylallyl)adenos 99.9 6.1E-23 1.3E-27 236.6 17.5 187 622-816 132-331 (420)
97 PRK05286 dihydroorotate dehydr 99.9 8.6E-23 1.9E-27 229.1 18.2 174 62-249 136-336 (344)
98 PRK14333 (dimethylallyl)adenos 99.9 7.2E-23 1.6E-27 238.4 17.8 185 624-816 155-356 (448)
99 cd04739 DHOD_like Dihydroorota 99.9 3.6E-22 7.8E-27 222.3 22.0 172 63-249 99-284 (325)
100 PRK14326 (dimethylallyl)adenos 99.9 1.4E-22 3E-27 237.8 19.3 188 622-816 162-358 (502)
101 PRK14336 (dimethylallyl)adenos 99.9 1.1E-22 2.5E-27 234.2 17.8 183 624-814 131-323 (418)
102 TIGR01574 miaB-methiolase tRNA 99.9 1.4E-22 3.1E-27 235.4 17.3 187 622-816 150-348 (438)
103 TIGR00089 RNA modification enz 99.9 1.2E-22 2.6E-27 236.1 16.0 186 623-816 145-340 (429)
104 PRK08815 GTP cyclohydrolase; P 99.9 2.9E-24 6.3E-29 238.2 2.1 191 277-517 43-261 (375)
105 PRK14337 (dimethylallyl)adenos 99.9 2.4E-22 5.1E-27 233.7 18.1 189 620-816 151-350 (446)
106 TIGR03471 HpnJ hopanoid biosyn 99.9 2.5E-22 5.5E-27 236.2 18.1 183 624-815 203-386 (472)
107 PRK14328 (dimethylallyl)adenos 99.9 5.7E-22 1.2E-26 230.4 19.6 208 622-839 152-369 (439)
108 TIGR01125 MiaB-like tRNA modif 99.9 1.2E-21 2.7E-26 227.4 18.2 187 622-816 140-336 (430)
109 PRK14338 (dimethylallyl)adenos 99.9 1.5E-21 3.2E-26 227.7 18.7 187 622-816 160-356 (459)
110 TIGR01578 MiaB-like-B MiaB-lik 99.9 2.4E-21 5.1E-26 223.8 17.3 188 622-817 138-335 (420)
111 TIGR01210 conserved hypothetic 99.9 1.5E-20 3.3E-25 208.0 22.6 192 624-822 22-231 (313)
112 PRK07094 biotin synthase; Prov 99.8 3.1E-20 6.8E-25 208.2 21.2 203 624-839 46-249 (323)
113 PRK07565 dihydroorotate dehydr 99.8 3.3E-20 7.2E-25 208.0 18.0 172 63-249 101-286 (334)
114 PRK14862 rimO ribosomal protei 99.8 3.3E-20 7.1E-25 215.2 18.1 185 621-816 143-347 (440)
115 COG1243 ELP3 Histone acetyltra 99.8 9.3E-19 2E-23 191.2 24.6 165 670-834 136-322 (515)
116 cd02809 alpha_hydroxyacid_oxid 99.8 3.5E-19 7.7E-24 196.7 19.8 194 7-245 62-264 (299)
117 PLN02495 oxidoreductase, actin 99.8 2.1E-19 4.6E-24 201.2 17.7 180 63-249 113-317 (385)
118 COG0167 PyrD Dihydroorotate de 99.8 9.5E-19 2.1E-23 189.0 21.0 230 3-249 6-288 (310)
119 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 1.4E-19 3E-24 201.5 14.6 182 3-238 38-222 (369)
120 PRK02506 dihydroorotate dehydr 99.8 1.1E-18 2.3E-23 193.1 17.4 235 3-249 6-288 (310)
121 COG1242 Predicted Fe-S oxidore 99.8 2.5E-18 5.4E-23 176.9 18.5 194 630-827 45-246 (312)
122 PRK00202 nusB transcription an 99.8 3.1E-19 6.6E-24 174.2 10.1 130 530-659 1-131 (137)
123 COG0781 NusB Transcription ter 99.8 3.9E-19 8.5E-24 172.8 9.3 132 528-659 6-144 (151)
124 TIGR01036 pyrD_sub2 dihydrooro 99.8 3.3E-18 7.1E-23 190.7 17.4 228 4-248 51-334 (335)
125 smart00729 Elp3 Elongator prot 99.8 2.4E-17 5.2E-22 172.6 22.2 192 624-816 8-201 (216)
126 PRK06455 riboflavin synthase; 99.8 2.8E-19 6E-24 171.0 6.5 79 414-494 18-100 (155)
127 PF01029 NusB: NusB family; I 99.8 3.3E-19 7.3E-24 173.5 6.7 125 533-657 1-133 (134)
128 PRK10901 16S rRNA methyltransf 99.8 2.7E-18 5.8E-23 199.1 14.0 192 534-728 3-196 (427)
129 TIGR01951 nusB transcription a 99.8 2E-18 4.3E-23 166.9 10.1 127 532-658 1-128 (129)
130 cd00619 Terminator_NusB Transc 99.8 2.7E-18 5.9E-23 166.1 10.1 127 532-658 1-128 (130)
131 PF01180 DHO_dh: Dihydroorotat 99.8 1.1E-17 2.4E-22 184.9 16.2 174 63-249 96-291 (295)
132 PRK14901 16S rRNA methyltransf 99.7 5.7E-18 1.2E-22 196.8 10.7 194 534-728 2-203 (434)
133 PRK14904 16S rRNA methyltransf 99.7 2.3E-17 5.1E-22 192.3 12.4 196 534-729 3-206 (445)
134 cd00620 Methyltransferase_Sun 99.7 1.9E-17 4.1E-22 159.2 9.6 123 534-658 2-124 (126)
135 PRK14902 16S rRNA methyltransf 99.7 3.7E-17 7.9E-22 190.9 11.7 194 534-728 4-203 (444)
136 PLN02826 dihydroorotate dehydr 99.7 9.4E-16 2E-20 173.8 20.9 171 65-249 188-388 (409)
137 TIGR00433 bioB biotin syntheta 99.7 1.6E-15 3.4E-20 168.3 20.3 202 623-839 35-241 (296)
138 PRK06256 biotin synthase; Vali 99.7 1.5E-15 3.3E-20 171.3 19.0 200 623-837 64-268 (336)
139 TIGR00563 rsmB ribosomal RNA s 99.6 5.5E-16 1.2E-20 179.9 11.8 188 536-728 1-190 (426)
140 PRK00955 hypothetical protein; 99.6 1.8E-15 3.9E-20 177.2 15.9 190 622-815 297-527 (620)
141 PRK14903 16S rRNA methyltransf 99.6 1.8E-15 3.9E-20 175.0 13.6 182 534-728 4-188 (431)
142 TIGR02151 IPP_isom_2 isopenten 99.6 8.5E-15 1.8E-19 163.7 18.5 220 7-244 51-300 (333)
143 PRK08649 inosine 5-monophospha 99.6 5.9E-15 1.3E-19 165.4 14.8 176 3-235 41-218 (368)
144 COG1032 Fe-S oxidoreductase [E 99.6 1E-14 2.2E-19 173.2 15.8 190 624-816 205-405 (490)
145 PRK05437 isopentenyl pyrophosp 99.6 2.8E-14 6E-19 160.4 17.9 212 10-238 60-296 (352)
146 PRK01254 hypothetical protein; 99.6 1.7E-14 3.6E-19 167.3 14.8 198 613-815 366-609 (707)
147 cd01335 Radical_SAM Radical SA 99.6 4.6E-14 9.9E-19 145.9 15.0 181 624-813 4-187 (204)
148 TIGR03551 F420_cofH 7,8-dideme 99.6 7.2E-14 1.6E-18 157.6 17.4 202 624-833 46-264 (343)
149 PRK05481 lipoyl synthase; Prov 99.6 6.1E-14 1.3E-18 153.6 16.3 213 623-856 59-278 (289)
150 cd00447 NusB_Sun RNA binding d 99.6 9.4E-15 2E-19 141.2 8.7 123 535-658 2-127 (129)
151 cd04730 NPD_like 2-Nitropropan 99.5 1.2E-13 2.6E-18 148.1 17.0 191 10-241 2-194 (236)
152 cd02811 IDI-2_FMN Isopentenyl- 99.5 1.2E-13 2.6E-18 154.1 17.0 214 6-237 49-289 (326)
153 PRK12928 lipoyl synthase; Prov 99.5 3.7E-13 8.1E-18 147.0 18.5 213 620-855 63-285 (290)
154 PRK04180 pyridoxal biosynthesi 99.5 4.7E-14 1E-18 148.5 10.3 146 79-240 27-242 (293)
155 PRK09240 thiH thiamine biosynt 99.5 6.6E-13 1.4E-17 150.9 17.9 200 624-839 81-291 (371)
156 TIGR00423 radical SAM domain p 99.5 9.1E-13 2E-17 146.6 18.3 205 624-837 12-233 (309)
157 PRK06245 cofG FO synthase subu 99.5 5.8E-13 1.3E-17 150.2 16.5 202 623-837 18-239 (336)
158 TIGR03699 mena_SCO4550 menaqui 99.5 4.6E-13 1E-17 151.3 14.9 206 624-837 48-266 (340)
159 TIGR00510 lipA lipoate synthas 99.5 1.6E-12 3.5E-17 142.1 17.7 214 620-855 66-288 (302)
160 PRK08445 hypothetical protein; 99.5 8.4E-13 1.8E-17 148.3 15.9 198 624-829 49-263 (348)
161 TIGR02351 thiH thiazole biosyn 99.5 9.5E-13 2.1E-17 149.5 16.5 201 623-839 79-290 (366)
162 PRK06267 hypothetical protein; 99.4 3.2E-12 7E-17 144.1 19.3 196 624-838 34-235 (350)
163 TIGR03700 mena_SCO4494 putativ 99.4 2.4E-12 5.2E-17 145.6 17.1 203 624-837 55-275 (351)
164 PLN02389 biotin synthase 99.4 5.6E-12 1.2E-16 142.6 19.0 199 623-837 89-296 (379)
165 PRK08508 biotin synthase; Prov 99.4 7.5E-12 1.6E-16 136.9 19.0 201 622-837 12-217 (279)
166 PRK14024 phosphoribosyl isomer 99.4 2.8E-12 6E-17 137.4 15.0 127 108-247 102-237 (241)
167 PF04055 Radical_SAM: Radical 99.4 2.3E-12 4.9E-17 129.0 13.4 161 624-791 4-166 (166)
168 PRK09634 nusB transcription an 99.4 6.4E-13 1.4E-17 135.6 9.2 125 533-659 74-201 (207)
169 cd04722 TIM_phosphate_binding 99.4 1.9E-11 4.2E-16 126.4 18.7 190 13-233 1-200 (200)
170 cd00381 IMPDH IMPDH: The catal 99.4 2.1E-11 4.6E-16 135.8 19.5 199 10-242 34-236 (325)
171 KOG0134|consensus 99.4 4.2E-12 9.1E-17 139.4 13.0 170 76-248 174-364 (400)
172 KOG2492|consensus 99.3 3.1E-11 6.7E-16 129.8 17.9 193 625-821 228-449 (552)
173 TIGR03550 F420_cofG 7,8-dideme 99.3 1.5E-11 3.3E-16 137.5 15.8 199 624-837 11-235 (322)
174 PRK15108 biotin synthase; Prov 99.3 4.2E-11 9E-16 134.7 19.1 199 623-837 49-254 (345)
175 TIGR03151 enACPred_II putative 99.3 4.3E-11 9.3E-16 132.3 16.9 186 10-239 11-197 (307)
176 PLN02428 lipoic acid synthase 99.3 1.1E-10 2.3E-15 129.2 18.2 216 620-855 105-328 (349)
177 PRK01033 imidazole glycerol ph 99.3 1.5E-10 3.3E-15 125.2 18.8 179 30-238 39-232 (258)
178 PRK09613 thiH thiamine biosynt 99.3 1.9E-10 4.1E-15 132.9 19.7 184 624-814 91-287 (469)
179 KOG4355|consensus 99.2 6.6E-11 1.4E-15 126.3 11.6 91 728-818 299-391 (547)
180 cd04731 HisF The cyclase subun 99.2 4.3E-10 9.3E-15 121.0 15.3 188 28-247 34-238 (243)
181 COG1031 Uncharacterized Fe-S o 99.2 3.4E-10 7.5E-15 124.1 14.2 198 615-816 184-415 (560)
182 PRK07360 FO synthase subunit 2 99.2 3.9E-10 8.4E-15 128.5 15.3 183 624-816 67-268 (371)
183 TIGR03572 WbuZ glycosyl amidat 99.1 8E-10 1.7E-14 118.1 16.4 176 30-235 39-230 (232)
184 PRK05926 hypothetical protein; 99.1 9E-10 2E-14 124.5 17.4 181 623-814 74-272 (370)
185 PRK13585 1-(5-phosphoribosyl)- 99.1 6.4E-10 1.4E-14 119.6 15.4 158 65-249 76-239 (241)
186 TIGR03822 AblA_like_2 lysine-2 99.1 2.3E-09 5.1E-14 119.6 20.2 173 624-814 95-277 (321)
187 TIGR02708 L_lactate_ox L-lacta 99.1 1.7E-09 3.6E-14 120.8 18.3 202 7-236 78-316 (367)
188 cd04737 LOX_like_FMN L-Lactate 99.1 1E-09 2.2E-14 122.5 16.6 205 7-239 70-312 (351)
189 cd04732 HisA HisA. Phosphorib 99.1 7.5E-10 1.6E-14 118.5 13.6 152 65-243 73-230 (234)
190 PRK08444 hypothetical protein; 99.1 1.1E-09 2.4E-14 123.0 15.5 201 624-837 56-274 (353)
191 PRK00748 1-(5-phosphoribosyl)- 99.1 8.9E-10 1.9E-14 117.9 13.2 142 68-238 77-226 (233)
192 cd02922 FCB2_FMN Flavocytochro 99.1 4.4E-09 9.6E-14 117.5 18.7 209 7-240 62-308 (344)
193 COG0502 BioB Biotin synthase a 99.1 3.5E-09 7.6E-14 115.6 17.2 180 626-816 60-243 (335)
194 PRK05458 guanosine 5'-monophos 99.0 1.1E-08 2.4E-13 112.7 18.6 197 5-239 33-237 (326)
195 PRK02083 imidazole glycerol ph 99.0 4.6E-09 9.9E-14 113.7 15.0 187 29-247 38-242 (253)
196 PRK05927 hypothetical protein; 99.0 3.6E-09 7.9E-14 118.9 14.3 203 624-832 52-267 (350)
197 COG1244 Predicted Fe-S oxidore 99.0 3.3E-08 7.2E-13 105.0 19.6 187 630-821 64-265 (358)
198 TIGR00007 phosphoribosylformim 99.0 5.4E-09 1.2E-13 111.6 13.9 143 65-238 72-224 (230)
199 TIGR00735 hisF imidazoleglycer 99.0 9.1E-09 2E-13 111.3 15.6 187 30-247 39-244 (254)
200 KOG1436|consensus 99.0 1.4E-08 3.1E-13 106.6 15.8 228 6-249 91-378 (398)
201 PRK13361 molybdenum cofactor b 98.9 1.3E-08 2.8E-13 114.5 16.0 172 623-809 20-196 (329)
202 PRK00164 moaA molybdenum cofac 98.9 2.5E-08 5.4E-13 112.5 14.4 176 623-810 23-201 (331)
203 PRK09234 fbiC FO synthase; Rev 98.8 6.5E-08 1.4E-12 119.5 18.2 204 624-837 533-755 (843)
204 TIGR01306 GMP_reduct_2 guanosi 98.8 2.6E-07 5.6E-12 101.5 18.9 197 5-237 30-232 (321)
205 TIGR02666 moaA molybdenum cofa 98.8 7E-08 1.5E-12 109.0 14.4 175 623-812 16-198 (334)
206 PF06969 HemN_C: HemN C-termin 98.8 1.4E-08 3.1E-13 85.8 6.2 64 881-944 2-66 (66)
207 TIGR02668 moaA_archaeal probab 98.8 1.5E-07 3.2E-12 104.8 16.3 170 623-808 16-189 (302)
208 PTZ00413 lipoate synthase; Pro 98.7 6.6E-07 1.4E-11 98.8 19.9 214 625-855 157-376 (398)
209 PLN02535 glycolate oxidase 98.7 2.9E-07 6.3E-12 103.1 17.5 207 7-240 70-315 (364)
210 KOG2535|consensus 98.7 2.2E-07 4.8E-12 98.4 15.4 166 671-836 174-362 (554)
211 PRK05301 pyrroloquinoline quin 98.7 6.5E-07 1.4E-11 102.9 20.6 167 624-806 23-193 (378)
212 cd04731 HisF The cyclase subun 98.7 4.6E-08 9.9E-13 105.3 9.5 89 151-249 28-117 (243)
213 PRK06843 inosine 5-monophospha 98.7 6.3E-07 1.4E-11 101.4 18.7 202 10-242 42-295 (404)
214 KOG1799|consensus 98.7 5.5E-09 1.2E-13 110.6 2.0 153 73-236 215-389 (471)
215 TIGR02493 PFLA pyruvate format 98.7 8.2E-07 1.8E-11 95.1 18.8 177 624-812 22-204 (235)
216 COG1856 Uncharacterized homolo 98.7 5.1E-07 1.1E-11 90.9 15.7 165 667-838 55-219 (275)
217 PF03060 NMO: Nitronate monoox 98.7 4.5E-07 9.7E-12 101.9 16.7 191 10-240 11-227 (330)
218 TIGR00343 pyridoxal 5'-phospha 98.7 4.1E-07 8.8E-12 96.4 14.6 143 79-237 20-233 (287)
219 cd04727 pdxS PdxS is a subunit 98.7 4.2E-07 9E-12 96.3 14.6 146 79-240 18-233 (283)
220 cd04736 MDH_FMN Mandelate dehy 98.6 8.3E-07 1.8E-11 99.3 17.7 202 7-236 62-322 (361)
221 cd03319 L-Ala-DL-Glu_epimerase 98.6 6.5E-07 1.4E-11 100.3 17.0 146 58-240 118-266 (316)
222 PRK02083 imidazole glycerol ph 98.6 7.8E-08 1.7E-12 104.1 9.1 88 152-249 32-120 (253)
223 TIGR02109 PQQ_syn_pqqE coenzym 98.6 1.8E-06 3.9E-11 98.6 20.7 168 622-805 12-183 (358)
224 PLN02951 Molybderin biosynthes 98.6 5.2E-07 1.1E-11 102.8 15.4 178 623-812 64-244 (373)
225 COG0106 HisA Phosphoribosylfor 98.6 4.6E-07 9.9E-12 94.2 12.8 153 63-244 73-233 (241)
226 PF01070 FMN_dh: FMN-dependent 98.6 4.1E-07 9E-12 102.5 13.7 200 7-236 56-313 (356)
227 cd00945 Aldolase_Class_I Class 98.6 1.5E-06 3.2E-11 90.4 16.6 144 63-232 48-201 (201)
228 cd04743 NPD_PKS 2-Nitropropane 98.6 9.9E-07 2.1E-11 96.8 15.8 190 11-241 3-211 (320)
229 PLN02979 glycolate oxidase 98.6 1.4E-06 2.9E-11 96.7 16.8 204 6-236 66-311 (366)
230 PRK13125 trpA tryptophan synth 98.6 4.5E-07 9.9E-12 97.4 12.9 154 73-237 15-219 (244)
231 PRK11197 lldD L-lactate dehydr 98.5 2.1E-06 4.7E-11 96.6 17.7 203 7-236 68-333 (381)
232 cd02808 GltS_FMN Glutamate syn 98.5 2.5E-06 5.5E-11 97.8 18.5 117 115-239 196-321 (392)
233 TIGR01290 nifB nitrogenase cof 98.5 5.4E-06 1.2E-10 96.4 21.3 204 622-834 29-256 (442)
234 cd04729 NanE N-acetylmannosami 98.5 8.8E-07 1.9E-11 93.8 13.2 127 81-241 84-215 (219)
235 cd03332 LMO_FMN L-Lactate 2-mo 98.5 3.8E-06 8.3E-11 94.8 17.9 205 6-236 82-341 (383)
236 PRK09234 fbiC FO synthase; Rev 98.5 1.8E-06 3.8E-11 107.0 16.4 195 624-833 78-300 (843)
237 PRK01130 N-acetylmannosamine-6 98.5 2.2E-06 4.7E-11 90.9 14.5 132 82-245 81-215 (221)
238 cd04732 HisA HisA. Phosphorib 98.5 5.5E-07 1.2E-11 96.4 9.4 89 151-249 30-119 (234)
239 PF00478 IMPDH: IMP dehydrogen 98.4 2.1E-06 4.5E-11 95.4 13.8 198 5-239 33-247 (352)
240 PLN02446 (5-phosphoribosyl)-5- 98.4 4.8E-06 1E-10 88.7 15.8 142 64-235 82-241 (262)
241 TIGR00735 hisF imidazoleglycer 98.4 6E-07 1.3E-11 97.2 9.1 88 152-249 32-120 (254)
242 PLN02493 probable peroxisomal 98.4 5.9E-06 1.3E-10 92.6 17.0 203 7-236 68-312 (367)
243 cd04728 ThiG Thiazole synthase 98.4 2E-05 4.4E-10 82.2 19.2 207 2-241 2-215 (248)
244 COG2100 Predicted Fe-S oxidore 98.4 1.2E-05 2.7E-10 85.3 16.5 167 622-796 112-285 (414)
245 PRK11145 pflA pyruvate formate 98.4 1.2E-05 2.7E-10 86.7 17.3 205 624-842 27-242 (246)
246 COG2896 MoaA Molybdenum cofact 98.4 1E-05 2.2E-10 88.5 16.4 175 624-809 18-193 (322)
247 TIGR02495 NrdG2 anaerobic ribo 98.4 1E-05 2.2E-10 83.7 16.0 156 624-795 23-183 (191)
248 PRK14460 ribosomal RNA large s 98.4 8E-05 1.7E-09 84.1 24.3 205 622-843 107-323 (354)
249 PF04131 NanE: Putative N-acet 98.3 7.4E-06 1.6E-10 82.0 13.6 106 115-242 76-182 (192)
250 PRK00208 thiG thiazole synthas 98.3 3.9E-05 8.5E-10 80.1 19.0 200 2-237 3-209 (250)
251 TIGR03470 HpnH hopanoid biosyn 98.3 4.1E-05 8.9E-10 85.7 19.3 170 623-808 34-204 (318)
252 TIGR00238 KamA family protein. 98.3 2.8E-05 6E-10 87.3 17.4 171 624-811 120-297 (331)
253 TIGR03820 lys_2_3_AblA lysine- 98.2 3.3E-05 7.2E-10 87.9 17.6 188 624-837 115-312 (417)
254 PRK13762 tRNA-modifying enzyme 98.2 0.00011 2.3E-09 82.2 21.2 201 624-836 65-290 (322)
255 TIGR01305 GMP_reduct_1 guanosi 98.2 8.5E-05 1.8E-09 81.2 19.5 198 5-235 41-244 (343)
256 TIGR01919 hisA-trpF 1-(5-phosp 98.2 1.3E-05 2.9E-10 85.7 13.3 149 63-243 72-236 (243)
257 PRK00278 trpC indole-3-glycero 98.2 4.1E-05 8.8E-10 83.0 17.0 161 61-247 47-255 (260)
258 cd04742 NPD_FabD 2-Nitropropan 98.2 3E-05 6.4E-10 88.2 16.1 214 11-240 14-256 (418)
259 TIGR03278 methan_mark_10 putat 98.2 8.5E-05 1.8E-09 85.0 19.0 175 624-808 29-209 (404)
260 cd00331 IGPS Indole-3-glycerol 98.2 6.2E-05 1.3E-09 79.6 16.6 142 63-246 72-215 (217)
261 cd03316 MR_like Mandelate race 98.2 2.4E-05 5.3E-10 89.3 14.5 141 61-232 124-270 (357)
262 PRK13587 1-(5-phosphoribosyl)- 98.2 2.6E-05 5.7E-10 83.1 13.7 141 66-237 77-226 (234)
263 PRK14114 1-(5-phosphoribosyl)- 98.2 2.9E-05 6.3E-10 82.9 14.0 145 67-245 75-236 (241)
264 PRK05096 guanosine 5'-monophos 98.1 0.00011 2.4E-09 80.3 18.4 193 10-242 46-252 (346)
265 PRK14456 ribosomal RNA large s 98.1 0.00033 7.1E-09 79.4 23.1 202 624-843 128-344 (368)
266 COG2070 Dioxygenases related t 98.1 1.8E-05 3.9E-10 88.5 12.5 192 10-239 14-220 (336)
267 KOG1606|consensus 98.1 1.2E-05 2.7E-10 79.9 9.7 153 79-247 31-253 (296)
268 PRK14455 ribosomal RNA large s 98.1 0.00018 3.9E-09 81.5 20.5 204 623-843 115-328 (356)
269 PRK14463 ribosomal RNA large s 98.1 0.00024 5.2E-09 80.2 21.3 201 622-843 108-316 (349)
270 PTZ00314 inosine-5'-monophosph 98.1 5.3E-05 1.1E-09 89.4 16.6 148 66-242 230-383 (495)
271 COG0214 SNZ1 Pyridoxine biosyn 98.1 1.9E-05 4E-10 80.2 10.8 144 79-238 30-243 (296)
272 TIGR01769 GGGP geranylgeranylg 98.1 0.00011 2.3E-09 76.2 16.6 131 76-232 11-205 (205)
273 TIGR02129 hisA_euk phosphoribo 98.1 5.1E-05 1.1E-09 80.6 14.0 142 65-237 76-237 (253)
274 PF00977 His_biosynth: Histidi 98.1 1.7E-05 3.8E-10 84.4 10.6 145 64-237 72-225 (229)
275 COG1060 ThiH Thiamine biosynth 98.1 8E-05 1.7E-09 84.1 15.6 207 624-837 66-286 (370)
276 cd03315 MLE_like Muconate lact 98.0 0.00012 2.7E-09 79.8 16.9 133 62-231 73-209 (265)
277 COG0641 AslB Arylsulfatase reg 98.0 0.00017 3.6E-09 82.0 17.6 176 627-810 18-198 (378)
278 PRK13745 anaerobic sulfatase-m 98.0 0.00019 4.2E-09 83.4 18.7 174 625-807 22-206 (412)
279 COG2516 Biotin synthase-relate 98.0 1.6E-05 3.6E-10 84.9 8.8 209 624-850 38-264 (339)
280 cd04724 Tryptophan_synthase_al 98.0 6E-05 1.3E-09 81.0 13.1 155 73-236 11-219 (242)
281 TIGR01163 rpe ribulose-phospha 98.0 0.0001 2.2E-09 77.5 14.5 157 67-246 2-207 (210)
282 COG3010 NanE Putative N-acetyl 98.0 0.00022 4.8E-09 71.7 15.4 140 74-240 31-216 (229)
283 TIGR02814 pfaD_fam PfaD family 98.0 0.00013 2.9E-09 83.5 15.9 205 11-240 19-261 (444)
284 TIGR00262 trpA tryptophan synt 98.0 0.00017 3.7E-09 77.9 15.8 165 65-236 11-231 (256)
285 TIGR01949 AroFGH_arch predicte 98.0 0.00035 7.6E-09 75.9 18.3 154 62-246 69-241 (258)
286 TIGR03572 WbuZ glycosyl amidat 98.0 2.8E-05 6.1E-10 83.1 9.4 89 151-249 31-120 (232)
287 TIGR03821 AblA_like_1 lysine-2 98.0 0.00017 3.7E-09 80.6 15.9 190 623-838 102-301 (321)
288 TIGR01302 IMP_dehydrog inosine 97.9 0.00019 4.1E-09 84.1 16.7 145 72-245 220-369 (450)
289 PRK14469 ribosomal RNA large s 97.9 0.00072 1.6E-08 76.5 20.7 202 623-843 107-316 (343)
290 COG0107 HisF Imidazoleglycerol 97.9 0.00016 3.5E-09 73.9 13.5 136 72-234 80-231 (256)
291 PRK00748 1-(5-phosphoribosyl)- 97.9 4.2E-05 9.2E-10 81.8 10.1 89 151-249 31-120 (233)
292 COG0535 Predicted Fe-S oxidore 97.9 0.00073 1.6E-08 76.5 20.5 173 623-809 25-200 (347)
293 cd00429 RPE Ribulose-5-phospha 97.9 0.00018 3.9E-09 75.6 14.3 161 65-246 1-208 (211)
294 PRK13586 1-(5-phosphoribosyl)- 97.9 0.00018 3.8E-09 76.6 14.1 138 68-238 76-224 (232)
295 PRK08649 inosine 5-monophospha 97.9 0.00011 2.4E-09 83.1 13.2 150 74-245 139-298 (368)
296 PRK13758 anaerobic sulfatase-m 97.9 0.0011 2.3E-08 76.3 21.1 169 625-803 13-193 (370)
297 TIGR00259 thylakoid_BtpA membr 97.9 0.00038 8.1E-09 74.4 15.9 195 21-239 26-234 (257)
298 PRK14468 ribosomal RNA large s 97.9 0.0012 2.6E-08 74.4 20.7 203 622-843 98-312 (343)
299 COG1304 idi Isopentenyl diphos 97.9 4.1E-05 8.8E-10 85.9 8.7 103 114-236 200-306 (360)
300 PRK14457 ribosomal RNA large s 97.9 0.0011 2.3E-08 74.7 20.0 204 620-843 104-321 (345)
301 cd00958 DhnA Class I fructose- 97.8 0.0017 3.6E-08 69.6 20.5 194 12-246 9-228 (235)
302 PRK13111 trpA tryptophan synth 97.8 0.00051 1.1E-08 74.1 16.2 167 66-236 14-232 (258)
303 TIGR01304 IMP_DH_rel_2 IMP deh 97.8 0.00017 3.7E-09 81.3 12.9 144 74-241 140-293 (369)
304 PRK14466 ribosomal RNA large s 97.8 0.0013 2.9E-08 73.4 19.6 200 623-843 109-316 (345)
305 PRK00507 deoxyribose-phosphate 97.8 0.00038 8.2E-09 73.3 14.5 137 72-234 69-210 (221)
306 PRK14470 ribosomal RNA large s 97.8 0.0018 3.9E-08 72.6 20.5 178 622-809 102-288 (336)
307 COG0107 HisF Imidazoleglycerol 97.8 6E-05 1.3E-09 77.0 7.8 88 152-249 32-120 (256)
308 PRK13585 1-(5-phosphoribosyl)- 97.8 6.9E-05 1.5E-09 80.6 8.8 88 152-249 34-122 (241)
309 PRK14467 ribosomal RNA large s 97.8 0.001 2.2E-08 74.9 18.1 206 620-843 102-320 (348)
310 PLN02274 inosine-5'-monophosph 97.8 0.00054 1.2E-08 81.0 16.6 142 72-241 244-389 (505)
311 PRK04128 1-(5-phosphoribosyl)- 97.8 9.5E-05 2.1E-09 78.5 9.3 101 137-249 16-118 (228)
312 PF04481 DUF561: Protein of un 97.8 0.0002 4.3E-09 72.6 10.7 152 63-235 61-217 (242)
313 cd04723 HisA_HisF Phosphoribos 97.7 0.00032 6.9E-09 75.0 13.1 144 66-239 79-225 (233)
314 TIGR00048 radical SAM enzyme, 97.7 0.0019 4E-08 73.2 19.6 203 622-843 110-324 (355)
315 PF03437 BtpA: BtpA family; I 97.7 0.00057 1.2E-08 73.0 14.3 197 21-242 27-237 (254)
316 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.0018 4E-08 67.8 18.2 146 63-245 52-199 (206)
317 KOG0538|consensus 97.7 0.0017 3.7E-08 69.1 17.3 176 65-273 122-334 (363)
318 CHL00200 trpA tryptophan synth 97.7 0.0009 1.9E-08 72.4 15.8 169 65-237 16-236 (263)
319 PRK07107 inosine 5-monophospha 97.7 0.00037 8E-09 82.2 13.9 140 74-238 239-387 (502)
320 TIGR01768 GGGP-family geranylg 97.7 0.00089 1.9E-08 70.0 15.1 153 78-245 16-221 (223)
321 PF05690 ThiG: Thiazole biosyn 97.7 0.0042 9E-08 64.4 19.5 199 3-237 2-209 (247)
322 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 0.0004 8.7E-09 81.4 13.7 132 78-237 226-362 (475)
323 PRK07695 transcriptional regul 97.7 0.0013 2.9E-08 68.6 16.0 81 155-243 107-188 (201)
324 COG4277 Predicted DNA-binding 97.6 0.0005 1.1E-08 72.5 12.1 212 624-849 61-296 (404)
325 PLN02591 tryptophan synthase 97.6 0.0017 3.6E-08 69.7 16.3 159 73-236 13-222 (250)
326 COG1625 Fe-S oxidoreductase, r 97.6 0.0024 5.1E-08 71.4 17.8 213 623-841 33-249 (414)
327 PLN02617 imidazole glycerol ph 97.6 0.00068 1.5E-08 80.4 14.5 167 64-249 313-529 (538)
328 cd02812 PcrB_like PcrB_like pr 97.6 0.0013 2.9E-08 68.7 14.8 57 190-246 161-218 (219)
329 PRK05567 inosine 5'-monophosph 97.6 0.0012 2.7E-08 78.2 16.5 140 72-239 224-367 (486)
330 TIGR00734 hisAF_rel hisA/hisF 97.6 0.00042 9.1E-09 73.3 11.3 105 109-237 107-218 (221)
331 COG0159 TrpA Tryptophan syntha 97.6 0.002 4.2E-08 68.8 15.9 166 66-235 19-236 (265)
332 COG0731 Fe-S oxidoreductases [ 97.6 0.0039 8.4E-08 67.7 18.4 176 624-810 31-218 (296)
333 cd00452 KDPG_aldolase KDPG and 97.6 0.0012 2.6E-08 68.3 13.9 146 63-236 3-175 (190)
334 PF01645 Glu_synthase: Conserv 97.6 0.0002 4.4E-09 80.3 8.7 115 115-237 185-308 (368)
335 PTZ00170 D-ribulose-5-phosphat 97.5 0.0017 3.8E-08 69.0 15.1 158 64-243 7-212 (228)
336 TIGR00126 deoC deoxyribose-pho 97.5 0.0019 4E-08 67.5 14.3 134 72-230 65-202 (211)
337 PRK14024 phosphoribosyl isomer 97.5 0.00034 7.4E-09 75.1 9.0 88 151-249 33-121 (241)
338 PRK01033 imidazole glycerol ph 97.5 0.00034 7.4E-09 75.9 9.0 89 151-249 31-120 (258)
339 PRK14459 ribosomal RNA large s 97.5 0.017 3.7E-07 65.5 22.5 204 622-843 126-350 (373)
340 PRK05581 ribulose-phosphate 3- 97.5 0.0016 3.6E-08 68.8 13.7 161 66-246 6-212 (220)
341 PRK14454 ribosomal RNA large s 97.5 0.0054 1.2E-07 69.1 18.2 204 621-843 105-317 (342)
342 PLN02334 ribulose-phosphate 3- 97.5 0.0043 9.3E-08 66.2 16.7 147 62-246 64-216 (229)
343 PRK07226 fructose-bisphosphate 97.4 0.0033 7.2E-08 68.6 16.1 152 63-245 73-244 (267)
344 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.003 6.6E-08 66.0 15.1 129 75-228 68-199 (203)
345 PRK04128 1-(5-phosphoribosyl)- 97.4 0.001 2.2E-08 70.8 11.6 133 66-238 74-217 (228)
346 PRK07807 inosine 5-monophospha 97.4 0.0017 3.6E-08 76.3 14.4 134 78-242 228-369 (479)
347 PRK13587 1-(5-phosphoribosyl)- 97.4 0.00047 1E-08 73.6 8.9 88 152-249 33-122 (234)
348 PRK08883 ribulose-phosphate 3- 97.4 0.0022 4.8E-08 67.6 13.7 155 66-245 2-208 (220)
349 PRK14462 ribosomal RNA large s 97.4 0.011 2.3E-07 66.7 19.8 204 622-843 115-329 (356)
350 PRK04169 geranylgeranylglycery 97.4 0.0047 1E-07 65.3 15.8 142 83-240 26-221 (232)
351 TIGR00007 phosphoribosylformim 97.4 0.00058 1.3E-08 72.9 9.2 89 151-249 29-118 (230)
352 COG0320 LipA Lipoate synthase 97.4 0.0057 1.2E-07 64.5 15.6 212 624-856 77-295 (306)
353 COG1533 SplB DNA repair photol 97.4 0.0061 1.3E-07 67.1 16.6 180 624-809 36-226 (297)
354 CHL00162 thiG thiamin biosynth 97.3 0.0073 1.6E-07 63.3 16.0 205 3-240 10-226 (267)
355 PRK09140 2-dehydro-3-deoxy-6-p 97.3 0.0077 1.7E-07 62.9 16.4 151 63-240 9-187 (206)
356 TIGR02494 PFLE_PFLC glycyl-rad 97.3 0.012 2.7E-07 65.2 18.6 153 649-812 108-264 (295)
357 PRK14465 ribosomal RNA large s 97.3 0.014 3E-07 65.6 18.7 202 622-843 110-320 (342)
358 cd06556 ICL_KPHMT Members of t 97.2 0.011 2.3E-07 63.2 15.8 155 18-212 16-199 (240)
359 cd00405 PRAI Phosphoribosylant 97.2 0.02 4.3E-07 59.9 17.6 181 19-241 4-190 (203)
360 PF00977 His_biosynth: Histidi 97.2 0.00051 1.1E-08 73.2 5.6 88 152-249 31-119 (229)
361 TIGR02129 hisA_euk phosphoribo 97.2 0.0011 2.4E-08 70.6 8.0 80 153-249 41-125 (253)
362 PRK06552 keto-hydroxyglutarate 97.2 0.0073 1.6E-07 63.3 13.9 147 63-237 12-188 (213)
363 PF00290 Trp_syntA: Tryptophan 97.1 0.003 6.4E-08 68.0 11.2 167 66-236 12-230 (259)
364 PRK06806 fructose-bisphosphate 97.1 0.014 3E-07 63.9 16.5 159 63-247 74-243 (281)
365 COG0036 Rpe Pentose-5-phosphat 97.1 0.012 2.6E-07 60.9 14.9 159 64-247 4-212 (220)
366 cd04726 KGPDC_HPS 3-Keto-L-gul 97.1 0.015 3.3E-07 60.6 16.2 144 63-245 53-199 (202)
367 COG0434 SgcQ Predicted TIM-bar 97.1 0.034 7.3E-07 57.6 17.5 200 13-237 14-237 (263)
368 PRK14114 1-(5-phosphoribosyl)- 97.1 0.0021 4.6E-08 68.8 9.1 85 152-247 32-117 (241)
369 PRK13307 bifunctional formalde 97.1 0.016 3.4E-07 66.1 16.4 145 63-245 226-371 (391)
370 PRK05283 deoxyribose-phosphate 97.1 0.0082 1.8E-07 64.2 13.3 127 75-225 82-216 (257)
371 PRK08005 epimerase; Validated 97.0 0.02 4.3E-07 59.8 15.7 156 66-246 3-205 (210)
372 PRK14453 chloramphenicol/florf 97.0 0.048 1E-06 61.6 19.9 203 622-843 105-321 (347)
373 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.0029 6.2E-08 67.9 9.6 87 152-249 33-120 (243)
374 COG0269 SgbH 3-hexulose-6-phos 97.0 0.025 5.3E-07 58.3 15.7 143 62-240 55-200 (217)
375 PTZ00314 inosine-5'-monophosph 97.0 0.01 2.2E-07 70.3 14.9 68 152-232 242-310 (495)
376 COG0106 HisA Phosphoribosylfor 97.0 0.0027 5.9E-08 66.5 8.8 89 151-249 32-121 (241)
377 PRK11194 ribosomal RNA large s 97.0 0.062 1.3E-06 61.2 20.2 203 622-843 108-328 (372)
378 TIGR01182 eda Entner-Doudoroff 97.0 0.0061 1.3E-07 63.2 11.1 152 63-241 7-185 (204)
379 PRK11750 gltB glutamate syntha 97.0 0.005 1.1E-07 79.1 12.5 161 63-240 906-1104(1485)
380 PRK13957 indole-3-glycerol-pho 96.9 0.017 3.8E-07 61.5 14.5 154 79-247 64-245 (247)
381 PRK07028 bifunctional hexulose 96.9 0.033 7.2E-07 65.2 18.4 107 119-244 95-202 (430)
382 PLN02446 (5-phosphoribosyl)-5- 96.9 0.0025 5.3E-08 68.3 8.0 84 151-249 44-132 (262)
383 COG1509 KamA Lysine 2,3-aminom 96.9 0.02 4.4E-07 63.0 15.0 172 624-814 118-299 (369)
384 cd03329 MR_like_4 Mandelate ra 96.9 0.017 3.7E-07 66.2 15.1 123 74-231 143-270 (368)
385 PF00218 IGPS: Indole-3-glycer 96.9 0.0084 1.8E-07 64.3 11.4 156 77-247 69-253 (254)
386 KOG2900|consensus 96.8 0.0045 9.7E-08 63.8 8.6 181 622-815 89-278 (380)
387 PRK04302 triosephosphate isome 96.8 0.027 5.8E-07 59.8 14.8 157 63-247 56-217 (223)
388 PRK07455 keto-hydroxyglutarate 96.8 0.022 4.8E-07 58.6 13.6 146 63-237 11-185 (187)
389 PRK13586 1-(5-phosphoribosyl)- 96.8 0.0053 1.1E-07 65.4 9.1 87 152-249 32-119 (232)
390 COG1731 Archaeal riboflavin sy 96.8 0.0038 8.3E-08 57.8 6.7 66 424-491 32-97 (154)
391 cd04723 HisA_HisF Phosphoribos 96.7 0.0064 1.4E-07 65.0 9.5 86 152-249 37-123 (233)
392 PRK08745 ribulose-phosphate 3- 96.7 0.059 1.3E-06 56.9 16.2 151 66-241 6-208 (223)
393 cd00377 ICL_PEPM Members of th 96.7 0.071 1.5E-06 57.3 17.2 193 18-233 13-227 (243)
394 PRK00311 panB 3-methyl-2-oxobu 96.7 0.046 1E-06 59.1 15.5 153 18-211 19-203 (264)
395 PRK07565 dihydroorotate dehydr 96.7 0.029 6.3E-07 63.4 14.6 108 117-233 86-199 (334)
396 KOG2550|consensus 96.6 0.014 3.1E-07 64.5 11.3 68 154-234 254-322 (503)
397 PRK05718 keto-hydroxyglutarate 96.6 0.014 3E-07 61.2 10.7 151 63-240 14-190 (212)
398 cd03321 mandelate_racemase Man 96.6 0.025 5.4E-07 64.6 13.6 134 62-231 129-266 (355)
399 COG2022 ThiG Uncharacterized e 96.6 0.11 2.3E-06 53.7 16.3 199 3-235 10-214 (262)
400 PF01680 SOR_SNZ: SOR/SNZ fami 96.6 0.014 2.9E-07 57.6 9.4 118 79-229 24-142 (208)
401 PRK08227 autoinducer 2 aldolas 96.6 0.086 1.9E-06 56.9 16.5 170 62-270 73-261 (264)
402 cd00564 TMP_TenI Thiamine mono 96.6 0.012 2.7E-07 60.6 10.0 84 156-246 108-192 (196)
403 PLN02424 ketopantoate hydroxym 96.6 0.048 1E-06 60.0 14.7 153 20-211 41-224 (332)
404 PLN02274 inosine-5'-monophosph 96.5 0.027 5.8E-07 66.8 13.8 73 152-237 249-324 (505)
405 PRK00043 thiE thiamine-phospha 96.5 0.013 2.8E-07 61.5 10.1 83 156-244 117-200 (212)
406 PF01791 DeoC: DeoC/LacD famil 96.5 0.013 2.8E-07 62.9 10.1 137 79-236 79-234 (236)
407 PF01081 Aldolase: KDPG and KH 96.5 0.02 4.3E-07 59.1 10.9 150 64-241 8-185 (196)
408 KOG2334|consensus 96.5 0.0005 1.1E-08 76.0 -1.0 133 92-243 289-422 (477)
409 PRK06015 keto-hydroxyglutarate 96.4 0.027 5.9E-07 58.2 11.5 147 63-236 3-176 (201)
410 COG1646 Predicted phosphate-bi 96.4 0.097 2.1E-06 54.4 15.1 155 76-247 28-235 (240)
411 TIGR01859 fruc_bis_ald_ fructo 96.4 0.063 1.4E-06 58.9 14.7 112 116-236 113-234 (282)
412 COG0274 DeoC Deoxyribose-phosp 96.4 0.053 1.1E-06 56.2 12.8 133 72-229 72-209 (228)
413 PRK11840 bifunctional sulfur c 96.3 0.2 4.3E-06 55.1 17.6 139 72-240 146-286 (326)
414 COG1180 PflA Pyruvate-formate 96.3 0.28 6.1E-06 53.3 18.9 156 624-795 42-203 (260)
415 PRK14464 ribosomal RNA large s 96.3 0.098 2.1E-06 58.8 15.7 204 619-843 98-308 (344)
416 TIGR03279 cyano_FeS_chp putati 96.3 0.15 3.3E-06 58.4 17.1 165 622-833 79-249 (433)
417 TIGR02317 prpB methylisocitrat 96.3 0.098 2.1E-06 57.3 15.1 195 20-236 19-233 (285)
418 cd06557 KPHMT-like Ketopantoat 96.3 0.086 1.9E-06 56.7 14.4 154 18-211 16-200 (254)
419 PRK10076 pyruvate formate lyas 96.3 0.55 1.2E-05 49.4 20.2 180 649-843 21-208 (213)
420 PRK14461 ribosomal RNA large s 96.3 0.3 6.4E-06 55.1 19.0 206 622-843 112-343 (371)
421 TIGR00693 thiE thiamine-phosph 96.2 0.024 5.2E-07 58.8 9.8 80 157-242 110-190 (196)
422 COG0820 Predicted Fe-S-cluster 96.2 0.3 6.5E-06 54.4 18.5 186 622-815 106-302 (349)
423 PF00478 IMPDH: IMP dehydrogen 96.2 0.036 7.8E-07 62.1 11.5 100 117-234 72-179 (352)
424 PLN02617 imidazole glycerol ph 96.2 0.013 2.8E-07 69.7 8.5 84 151-241 268-363 (538)
425 COG2108 Uncharacterized conser 96.1 0.066 1.4E-06 58.0 12.6 166 624-810 35-207 (353)
426 PRK06801 hypothetical protein; 96.1 0.12 2.7E-06 56.6 14.6 151 63-237 74-238 (286)
427 PRK11320 prpB 2-methylisocitra 96.1 0.14 3.1E-06 56.1 15.1 196 19-236 22-238 (292)
428 TIGR00734 hisAF_rel hisA/hisF 96.0 0.02 4.4E-07 60.5 7.9 82 152-246 38-122 (221)
429 cd03324 rTSbeta_L-fuconate_deh 96.0 0.11 2.3E-06 60.5 14.5 124 72-231 194-323 (415)
430 PRK07315 fructose-bisphosphate 95.9 0.19 4.2E-06 55.4 15.6 117 114-238 113-238 (293)
431 PLN02460 indole-3-glycerol-pho 95.9 0.09 2E-06 58.4 12.7 155 78-247 141-332 (338)
432 PRK13802 bifunctional indole-3 95.9 0.097 2.1E-06 64.0 14.1 158 77-249 71-257 (695)
433 PF00834 Ribul_P_3_epim: Ribul 95.9 0.028 6.1E-07 58.4 8.3 149 65-238 1-200 (201)
434 TIGR03365 Bsubt_queE 7-cyano-7 95.9 0.092 2E-06 56.3 12.4 130 622-775 27-160 (238)
435 TIGR02320 PEP_mutase phosphoen 95.9 0.36 7.8E-06 53.0 17.1 156 62-236 77-244 (285)
436 cd03325 D-galactonate_dehydrat 95.8 0.12 2.5E-06 59.0 13.8 143 62-232 111-257 (352)
437 COG0352 ThiE Thiamine monophos 95.8 0.053 1.1E-06 56.6 9.8 86 154-247 115-201 (211)
438 cd03328 MR_like_3 Mandelate ra 95.8 0.11 2.4E-06 59.2 13.3 121 74-231 138-264 (352)
439 PRK07114 keto-hydroxyglutarate 95.8 0.23 4.9E-06 52.4 14.5 151 63-241 14-197 (222)
440 TIGR02319 CPEP_Pphonmut carbox 95.7 0.34 7.3E-06 53.3 16.3 196 19-236 21-237 (294)
441 COG4948 L-alanine-DL-glutamate 95.7 0.12 2.6E-06 59.3 13.5 122 74-231 143-268 (372)
442 TIGR00222 panB 3-methyl-2-oxob 95.6 0.13 2.9E-06 55.2 12.1 153 18-211 19-202 (263)
443 cd00377 ICL_PEPM Members of th 95.6 0.12 2.6E-06 55.6 11.8 159 81-248 21-194 (243)
444 cd03326 MR_like_1 Mandelate ra 95.5 0.21 4.6E-06 57.5 14.3 123 73-231 159-289 (385)
445 COG2513 PrpB PEP phosphonomuta 95.5 0.18 4E-06 54.3 12.6 152 61-233 76-235 (289)
446 PRK14017 galactonate dehydrata 95.5 0.21 4.4E-06 57.7 14.2 143 62-232 112-258 (382)
447 COG0134 TrpC Indole-3-glycerol 95.4 0.088 1.9E-06 56.1 10.0 157 73-247 66-251 (254)
448 COG0069 GltB Glutamate synthas 95.4 0.13 2.7E-06 59.6 12.0 159 62-237 212-408 (485)
449 cd03322 rpsA The starvation se 95.4 0.24 5.2E-06 56.6 14.2 125 63-231 115-243 (361)
450 PRK07998 gatY putative fructos 95.3 0.32 7E-06 53.1 14.2 150 63-236 74-233 (283)
451 TIGR02321 Pphn_pyruv_hyd phosp 95.3 0.42 9.1E-06 52.6 15.2 155 81-249 27-202 (290)
452 COG2513 PrpB PEP phosphonomuta 95.3 0.26 5.6E-06 53.1 13.0 162 80-250 29-202 (289)
453 TIGR02317 prpB methylisocitrat 95.3 0.3 6.5E-06 53.5 13.8 158 81-249 25-196 (285)
454 PRK06512 thiamine-phosphate py 95.2 0.11 2.5E-06 54.9 10.0 82 156-246 124-206 (221)
455 cd00945 Aldolase_Class_I Class 95.2 0.38 8.2E-06 49.6 13.9 130 74-235 11-152 (201)
456 PF13714 PEP_mutase: Phosphoen 95.2 0.22 4.7E-06 53.3 12.1 186 20-234 15-221 (238)
457 TIGR02319 CPEP_Pphonmut carbox 95.2 0.28 6E-06 54.0 13.1 152 80-249 27-200 (294)
458 PRK03512 thiamine-phosphate py 95.2 0.13 2.8E-06 54.0 10.3 86 156-247 115-201 (211)
459 cd06557 KPHMT-like Ketopantoat 95.1 0.22 4.7E-06 53.7 12.1 106 81-208 24-131 (254)
460 TIGR01182 eda Entner-Doudoroff 95.1 0.37 8E-06 50.1 13.3 134 134-295 9-144 (204)
461 cd03327 MR_like_2 Mandelate ra 95.1 0.29 6.4E-06 55.5 13.8 139 63-231 108-251 (341)
462 PRK08091 ribulose-phosphate 3- 95.1 0.93 2E-05 48.0 16.2 155 63-244 12-219 (228)
463 PRK02615 thiamine-phosphate py 95.1 0.11 2.4E-06 58.4 10.0 80 156-243 253-333 (347)
464 cd00381 IMPDH IMPDH: The catal 95.0 0.13 2.8E-06 57.8 10.4 94 117-232 69-163 (325)
465 cd00408 DHDPS-like Dihydrodipi 95.0 0.3 6.4E-06 53.8 13.1 127 73-224 15-149 (281)
466 PRK11320 prpB 2-methylisocitra 95.0 0.3 6.6E-06 53.6 12.9 157 81-249 29-201 (292)
467 PRK15072 bifunctional D-altron 94.9 0.39 8.4E-06 55.8 14.2 141 70-231 123-286 (404)
468 PRK08185 hypothetical protein; 94.8 0.38 8.3E-06 52.6 13.1 116 113-234 104-230 (283)
469 PRK06552 keto-hydroxyglutarate 94.8 0.66 1.4E-05 48.8 14.4 137 134-297 14-153 (213)
470 TIGR02534 mucon_cyclo muconate 94.8 0.6 1.3E-05 53.6 15.3 136 62-231 129-267 (368)
471 cd03320 OSBS o-Succinylbenzoat 94.8 0.43 9.3E-06 52.0 13.4 132 63-231 72-205 (263)
472 PRK06843 inosine 5-monophospha 94.7 0.49 1.1E-05 54.3 14.2 69 152-233 154-223 (404)
473 cd03317 NAAAR N-acylamino acid 94.6 0.52 1.1E-05 53.8 14.3 131 62-231 124-257 (354)
474 cd06556 ICL_KPHMT Members of t 94.6 0.46 1E-05 50.8 12.8 143 81-249 24-190 (240)
475 PF01487 DHquinase_I: Type I 3 94.6 1.2 2.7E-05 47.1 16.1 93 68-172 2-97 (224)
476 TIGR01928 menC_lowGC/arch o-su 94.6 0.49 1.1E-05 53.3 13.7 131 62-231 120-252 (324)
477 cd03323 D-glucarate_dehydratas 94.6 0.34 7.4E-06 56.0 12.7 120 74-231 168-290 (395)
478 cd03174 DRE_TIM_metallolyase D 94.6 0.45 9.7E-06 51.7 13.1 128 667-802 32-166 (265)
479 cd03318 MLE Muconate Lactonizi 94.6 0.71 1.5E-05 52.9 15.2 135 63-231 131-268 (365)
480 cd00331 IGPS Indole-3-glycerol 94.5 0.13 2.8E-06 54.3 8.5 74 151-237 32-106 (217)
481 PRK06015 keto-hydroxyglutarate 94.5 0.81 1.8E-05 47.5 14.0 137 134-298 5-143 (201)
482 TIGR01858 tag_bisphos_ald clas 94.4 0.51 1.1E-05 51.6 12.8 149 63-234 72-232 (282)
483 cd04740 DHOD_1B_like Dihydroor 94.4 0.78 1.7E-05 50.9 14.7 140 83-231 27-185 (296)
484 PRK01130 N-acetylmannosamine-6 94.4 1 2.2E-05 47.7 14.9 132 66-232 9-146 (221)
485 PRK00311 panB 3-methyl-2-oxobu 94.4 0.44 9.4E-06 51.7 12.0 106 81-208 27-134 (264)
486 PRK01222 N-(5'-phosphoribosyl) 94.3 3 6.4E-05 43.8 17.8 178 18-240 7-191 (210)
487 PF01081 Aldolase: KDPG and KH 94.3 0.35 7.5E-06 50.0 10.5 137 134-298 9-147 (196)
488 cd04739 DHOD_like Dihydroorota 94.2 1.8 4E-05 48.7 17.2 157 64-233 13-197 (325)
489 PRK07709 fructose-bisphosphate 94.1 0.88 1.9E-05 49.9 13.8 115 111-233 111-234 (285)
490 PRK05458 guanosine 5'-monophos 94.1 0.32 6.9E-06 54.3 10.5 100 112-232 65-168 (326)
491 TIGR01305 GMP_reduct_1 guanosi 94.0 0.3 6.5E-06 54.0 9.9 96 117-232 80-178 (343)
492 PF01884 PcrB: PcrB family; I 94.0 0.063 1.4E-06 56.5 4.5 53 193-246 171-224 (230)
493 cd00947 TBP_aldolase_IIB Tagat 94.0 0.74 1.6E-05 50.3 12.8 152 62-235 68-229 (276)
494 COG0800 Eda 2-keto-3-deoxy-6-p 93.9 1.1 2.3E-05 46.5 13.1 146 63-236 12-185 (211)
495 PRK07084 fructose-bisphosphate 93.9 1.3 2.7E-05 49.3 14.6 118 104-223 112-236 (321)
496 PF09370 TIM-br_sig_trns: TIM- 93.8 0.34 7.4E-06 51.7 9.6 161 56-233 75-247 (268)
497 cd04729 NanE N-acetylmannosami 93.8 1.5 3.2E-05 46.4 14.7 134 63-231 10-149 (219)
498 PRK05096 guanosine 5'-monophos 93.8 0.31 6.7E-06 53.9 9.6 102 117-238 81-187 (346)
499 PRK07259 dihydroorotate dehydr 93.8 1.5 3.2E-05 48.8 15.4 141 80-231 27-188 (301)
500 PF13714 PEP_mutase: Phosphoen 93.7 0.69 1.5E-05 49.5 12.0 80 80-171 20-106 (238)
No 1
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.7e-58 Score=524.71 Aligned_cols=333 Identities=34% Similarity=0.550 Sum_probs=303.7
Q ss_pred CCCCCcceeeeeeecccccCC-cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 622 YKIPYKVIINEAIELVKSFGN-IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~-~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.++|||..+|.||++.+.... .....|++++.+||+...+.+....+++||||||||+.++++.++++++.+++.+.+.
T Consensus 16 iHiPFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 95 (390)
T PRK06582 16 IHWPFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIINKISNLAIID 95 (390)
T ss_pred EEeCCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999998765332 2357899999999987655444457999999999999999999999999999988888
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT 780 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT 780 (956)
+..++|+|+||++++++.++.|+++|+||||||||||||++|+.+||.|+.+++.++++.+++.+.++++|||+|+||||
T Consensus 96 ~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 96 NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCcc
Q psy2378 781 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYES 857 (956)
Q Consensus 781 ~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~s 857 (956)
.++|++|++.+.+++|+||++|+|+++|||+++++ ++..+|++++..+||..+.+.|.++||.+||+|||+|||++|
T Consensus 176 ~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~~g~~~ 255 (390)
T PRK06582 176 LKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISNYAKIGQEC 255 (390)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeeceeeeCCChhh
Confidence 99999999999999999999999999999999875 456788999999999999999999999999999999999999
Q ss_pred cchhccccCCceeeccccchhhh------------------------------------chhhHHHHHHHHhhhhccCCC
Q psy2378 858 QHNLNYWKFGDYLGNSIAKSKKI------------------------------------EKKCLIFEFMLNALRLKDGFS 901 (956)
Q Consensus 858 ~hn~~yw~~~~ylg~g~~~~~~~------------------------------------~~~~~~~e~~~~~lr~~~gi~ 901 (956)
+||..||+..+|+|+|++|.+.+ +..+...|.++++||+.+|++
T Consensus 256 ~hn~~yw~~~~~lg~G~gA~s~~~~~~~~~~r~~~~~~~~~Y~~~~~~~~~p~~~~~~l~~~e~~~e~i~l~LR~~~Gl~ 335 (390)
T PRK06582 256 LHNLTYWNYNSYLGIGPGAHSRIIESSSSVSAIMMWHKPEKWLDAVKTKNVGIQTNTKLTHQEIIEEILMMGLRLSKGIN 335 (390)
T ss_pred hhHHHHhcCCcEEEECCCeeecccCCCCCceeEEecCCHHHHHHHHHcCCCCcceeeeCCHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999998764321 234567799999999999999
Q ss_pred hhhHHHHhCCCHHH-H-HHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 902 PNLFFERTGINIKI-I-ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 902 ~~~~~~~~g~~~~~-~-~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
++.|.++||.++.. + .+.++.|+++||++. +++++||++|++++|.|+..|+.
T Consensus 336 ~~~~~~~~g~~~~~~~~~~~l~~l~~~gll~~-~~~l~lT~~G~~~~d~i~~~~~~ 390 (390)
T PRK06582 336 ISTLEQKLNTKLENILDMNNLKHYQALDLIRL-DENIYLTDKGLMLHSYIVPRLII 390 (390)
T ss_pred HHHHHHHHCcCHHHhhhHHHHHHHHHCCCEEE-CCEEEECcchhHHHHHHHHHHhC
Confidence 99999999998764 4 478999999999998 58899999999999999999973
No 2
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=3.1e-58 Score=505.73 Aligned_cols=296 Identities=49% Similarity=0.809 Sum_probs=266.8
Q ss_pred CceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CCchhccccCCCCCCEEEEecCCCHHHHHHHHHHHHHcC
Q psy2378 11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 89 (956)
Q Consensus 11 ~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G 89 (956)
++++||||+|+||.+||.+|+.+|+.+++||||++++.++ +....++..++++.|+++||+|++|++|++||+.++++|
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g 80 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRG 80 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCC
Confidence 5789999999999999999999997699999999999998 545568888999999999999999999999999999999
Q ss_pred CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Q psy2378 90 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV 169 (956)
Q Consensus 90 ~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~v 169 (956)
||+||||||||++++++++||++|+++|+++.+||+++++++++||+||+|+||++.++.+++.++++.++++|+++|+|
T Consensus 81 ~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv 160 (318)
T TIGR00742 81 YDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV 160 (318)
T ss_pred CCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988766667889999999999999999
Q ss_pred cccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccccCCcchHHHHHhh
Q psy2378 170 HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 170 h~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
|+||.+.+|++|..+++.++++|++++++++.+++||||+||||.|++|+.+++..||+||||||++.|||+|.++.+.+
T Consensus 161 HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMigRgal~nP~if~~~~~~l 240 (318)
T TIGR00742 161 HARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDREI 240 (318)
T ss_pred eCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEECHHHHhCCHHHHHHHHHh
Confidence 99998788999998888899999999999998878999999999999999999977999999999999999999999877
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCcccc
Q psy2378 250 YSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMT 319 (956)
Q Consensus 250 ~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~ 319 (956)
.++. .+.+++.|+++.+++|.+..... .......++|+.||++|+ +.+.+++-.+..
T Consensus 241 ~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~g~-------~~~~~~r~~~~~ 297 (318)
T TIGR00742 241 FNET--DEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQGK-------PGAKQWRRYLSE 297 (318)
T ss_pred cCCC--CCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHccC-------CCHHHHHHHHHh
Confidence 6543 25688999999999998753221 223456889999999998 677777776655
No 3
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.8e-57 Score=515.58 Aligned_cols=333 Identities=31% Similarity=0.497 Sum_probs=300.5
Q ss_pred cccCCCCCcceeeeeeecccccC--------CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSFG--------NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLL 690 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~~--------~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll 690 (956)
+| .++|||+.+|.||.+++... .....+|++++.+||+.... ....+++||||||||+.++++++.+++
T Consensus 13 lY-iHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~--~~~~i~~iy~GGGTps~l~~~~l~~ll 89 (400)
T PRK07379 13 AY-IHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPS--FGQPLQTVFFGGGTPSLLSVEQLERIL 89 (400)
T ss_pred EE-EEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhc--cCCceeEEEECCCccccCCHHHHHHHH
Confidence 35 78999999999999865321 12246799999999986432 234689999999999999999999999
Q ss_pred HHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeE
Q psy2378 691 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFN 769 (956)
Q Consensus 691 ~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~ 769 (956)
+.+.+.+++.+..++|+|+||++++++.++.|+++|++|||||||||||++|+.|||.|+.+++.++++.+++.|+ +++
T Consensus 90 ~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~ 169 (400)
T PRK07379 90 TTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFS 169 (400)
T ss_pred HHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 9999998888888999999999999999999999999999999999999999999999999999999999999965 599
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHH
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYE 846 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ye 846 (956)
+|||+|+||||.++|++|++++.+++|+||++|+|+++|||+++++ ++..+|++++..+||..+.+.|.++||.|||
T Consensus 170 ~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye 249 (400)
T PRK07379 170 LDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYE 249 (400)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 9999999999999999999999999999999999999999999875 4567889999999999999999999999999
Q ss_pred HHhhcCCCCcccchhccccCCceeeccccchhhh---------------------------------chhhHHHHHHHHh
Q psy2378 847 ISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKI---------------------------------EKKCLIFEFMLNA 893 (956)
Q Consensus 847 is~far~g~~s~hn~~yw~~~~ylg~g~~~~~~~---------------------------------~~~~~~~e~~~~~ 893 (956)
+|||+|||++|+||..||+..+|+|+|++|.+.+ +..+...|.++++
T Consensus 250 isnfa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~e~l~~~ 329 (400)
T PRK07379 250 ISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRFTRPRTRKEYYQWVEALIANGGLIDGEPSSPEDELLETLMLG 329 (400)
T ss_pred eeheECCChHHHHHHHHhcCCcEEEEcCCcceecCCEEEEcCCCHHHHHHHHHhhhccCCCcceeeCCHHHHHHHHHHhC
Confidence 9999999999999999999999999998864211 1234467899999
Q ss_pred hhhccCCChhhHHHHhCCCHH-HHHHHHHHHHHCCCeEEcCCE-EeeCc-hhhchHHHHHHHhh
Q psy2378 894 LRLKDGFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNNKN-IKPTS-FGRYFLNDLQQIFL 954 (956)
Q Consensus 894 lr~~~gi~~~~~~~~~g~~~~-~~~~~l~~l~~~Gl~~~~~~~-~~lT~-~G~~~~~~i~~~f~ 954 (956)
||+.+|++++.|.++||.++. .+...|+.|+++||+..++++ ++||+ +|++++|+|+..|+
T Consensus 330 Lr~~~Gl~~~~~~~~~g~~~~~~~~~~l~~l~~~gll~~~~~~~~~lT~~~G~~~~~~i~~~~~ 393 (400)
T PRK07379 330 LRLAEGVSLSALTERFGKEIVEQILQCLQPYFQQGWVELEGDRRLRLTDPEGFLFSNTVLASLF 393 (400)
T ss_pred CcccCCcCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEeCCeEEEECchHHhHHHHHHHHHHH
Confidence 999999999999999999874 567889999999999999999 99995 99999999999987
No 4
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=8e-57 Score=511.98 Aligned_cols=332 Identities=32% Similarity=0.534 Sum_probs=303.0
Q ss_pred CCCCCcceeeeeeecccccCC-cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 622 YKIPYKVIINEAIELVKSFGN-IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~-~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.++|||..+|.||.+.+.... ....+|++++++||+.....++...+++||||||||+.++++.+.++++.+++.+++.
T Consensus 9 iHIPFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~ 88 (380)
T PRK09057 9 VHWPFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVA 88 (380)
T ss_pred EEeCCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999998765332 2346799999999987665544457899999999999999999999999999999888
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT 780 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT 780 (956)
...++|+|+||++++.+.++.|+++|++|||||||||||++|+.|||.|+.+++.++++.+++.+.++++|||+|+||||
T Consensus 89 ~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 89 DDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred CCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCcc
Q psy2378 781 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYES 857 (956)
Q Consensus 781 ~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~s 857 (956)
.++|+++++.+.+++|+||++|+|+++|||++++. ++..+|++++..+||..+.+.|++.||.+|++|||+|||++|
T Consensus 169 ~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s~~a~~g~~~ 248 (380)
T PRK09057 169 LAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHARPGAES 248 (380)
T ss_pred HHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhHHHcCCCchh
Confidence 99999999999999999999999999999999874 456788999999999999999999999999999999999999
Q ss_pred cchhccccCCceeeccccchhhh-----------------------------------chhhHHHHHHHHhhhhccCCCh
Q psy2378 858 QHNLNYWKFGDYLGNSIAKSKKI-----------------------------------EKKCLIFEFMLNALRLKDGFSP 902 (956)
Q Consensus 858 ~hn~~yw~~~~ylg~g~~~~~~~-----------------------------------~~~~~~~e~~~~~lr~~~gi~~ 902 (956)
+||..||...+|+|+|+++.+.+ +..+.+.|.++++||+.+|+++
T Consensus 249 ~hn~~yw~~~~~lG~G~gA~s~~~~~~~~~~~~n~~~~~~Y~~~i~~~~~p~~~~~~l~~~e~~~e~~~~~Lr~~~gid~ 328 (380)
T PRK09057 249 RHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWLERVERNGHGIIEEERLDPEERADEFLLMGLRLREGIDL 328 (380)
T ss_pred hhHHHHhCCCCEEEEcCCccccccCCCceEEEecCCCHHHHHHHHHcCCCCcceeeeCCHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999998764322 2235678999999999999999
Q ss_pred hhHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-EEeeCchhhchHHHHHHHhhc
Q psy2378 903 NLFFERTGINIKIIESKLKNAEKLGLLKRNNK-NIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 903 ~~~~~~~g~~~~~~~~~l~~l~~~Gl~~~~~~-~~~lT~~G~~~~~~i~~~f~~ 955 (956)
+.|.++||.++. ...++.|+++||+..+++ +++||++|++++|+|+..|+.
T Consensus 329 ~~~~~~~g~~~~--~~~l~~l~~~gl~~~~~~~~~~lT~~G~~~~d~i~~~~~~ 380 (380)
T PRK09057 329 ARYAALSGRPLD--PERLADLIEEGLIERDGGSRLRATPAGRLVLDAVVADLAA 380 (380)
T ss_pred HHHHHHHCCCch--HHHHHHHHHCCCEEEcCCCEEEECcchhHHHHHHHHHHhC
Confidence 999999998764 357999999999999877 999999999999999999973
No 5
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-56 Score=510.03 Aligned_cols=333 Identities=39% Similarity=0.620 Sum_probs=306.7
Q ss_pred CCCCCcceeeeeeecccccCCc--chHHHHHHHHHHHhhhcccccc-cceeEEEecCCCCCCCCHHHHHHHHHHHHHHcc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNI--DEKKYLEALLIDVELSLPIILN-RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~--~~~~~v~~vl~eI~~~~~~~~~-~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~ 698 (956)
.++|+|..+|.||.+.+..... ....|++++++||+......+. +.+.+||||||||+.|+++.++++++.+++.++
T Consensus 39 iHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 39 IHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFN 118 (416)
T ss_pred EEcccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcc
Confidence 7899999999999998766544 4677999999999988766654 479999999999999999999999999999994
Q ss_pred -cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-CCeeEEEEeecC
Q psy2378 699 -FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL 776 (956)
Q Consensus 699 -~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~-~~~i~~dlI~Gl 776 (956)
..++.|+|+|+||++++.+.++.|+++|+||||+||||||+++||.+||.|+.+++.++++.+++. +.++|+|||||+
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl 198 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL 198 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 777799999999999999999999999999999999999999999999999999999999999997 779999999999
Q ss_pred CCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCC--CCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCC
Q psy2378 777 PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP--LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 854 (956)
Q Consensus 777 PgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g 854 (956)
|+||.++|.+|++.+.+++|+||++|.|+++|+|++++... ..+|+.++++++|+.+.+.|+++||.+||+|||+++|
T Consensus 199 P~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisnfa~~~ 278 (416)
T COG0635 199 PGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEISNFAKPG 278 (416)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEeechhcCcc
Confidence 99999999999999999999999999999999999988632 2589999999999999999999999999999999999
Q ss_pred CcccchhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccCCChh
Q psy2378 855 YESQHNLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDGFSPN 903 (956)
Q Consensus 855 ~~s~hn~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~gi~~~ 903 (956)
++|+||..||+.++|+|+|+++.+. ++..+.++|.++++||+..|+++.
T Consensus 279 ~e~~hNl~yw~~~~~lGiG~gA~g~~~~~~~~n~~~~~~y~~~~~~~~~~~~~~~~l~~~d~~~e~~i~gLr~~~gv~~~ 358 (416)
T COG0635 279 GECRHNLQYWETKDYLGIGAGAHGRIGGTRYQNKKNLKTYLEAVDEGGLPLVEGEELTPDDLIREALILGLRLNFGVDLA 358 (416)
T ss_pred hHHHhhhccccCCCeEEECCCceeeeccEEEEccCCHHHHHHHHhcCCCceeeeeeCCHHHHHHHHHHHHHHHhcCCCHH
Confidence 9999999999999999999876421 235677899999999999999999
Q ss_pred hHHHHhCCCHH--HHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 904 LFFERTGINIK--IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 904 ~~~~~~g~~~~--~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
.|..+||. +. ...+.++.++.+|++..+++++++|+.|+++.|+|++.|..
T Consensus 359 ~~~~~~~~-~~~~~~~~~l~~~~~~Gll~~~~~~~~lt~~g~~~~~~i~~~f~~ 411 (416)
T COG0635 359 ELEERFGI-FKFAEILELLAELIADGLLELDGDRLRLTEKGRLLLRSIAEAFDA 411 (416)
T ss_pred HHHHHhCc-chhhhHHHHHHHHHhCCCEEecCCEEEECCcchhHHHHHHHHHHH
Confidence 99999996 43 46778999999999999999999999999999999999974
No 6
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.5e-55 Score=503.46 Aligned_cols=334 Identities=51% Similarity=0.845 Sum_probs=303.3
Q ss_pred cccCCCCCcceeeeeeecccccCCc----chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSFGNI----DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 694 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~~~~----~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~ 694 (956)
+| .++|||..+|.||.+.+..... ...+|++++.+||+..........+++||||||||+.|+++.+.++++.++
T Consensus 22 lY-iHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~~L~~ll~~i~ 100 (394)
T PRK08898 22 LY-VHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVR 100 (394)
T ss_pred EE-EEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHHHHHHHHHHHH
Confidence 45 7899999999999987654321 247899999999986543333356999999999999999999999999999
Q ss_pred HHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 695 ~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
+.+++....++|+|+||++++.+.++.|+++|++||||||||+||++|+.|||.|+.+++.++++.+++.+.++++|||+
T Consensus 101 ~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~ 180 (394)
T PRK08898 101 ALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMY 180 (394)
T ss_pred HhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 99988777899999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCC
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 854 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g 854 (956)
|+||||.++|.+|++++.+++|+||++|+|+++|||++++... ..|+.+...+|+..+.+.|.+.||.+||++||+|||
T Consensus 181 GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~-~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~~ 259 (394)
T PRK08898 181 ALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPP-ALPDDDASADMQDWIEARLAAAGYAHYEVSAYAKPG 259 (394)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccC-CCCChHHHHHHHHHHHHHHHHcCCchhccccccCCC
Confidence 9999999999999999999999999999999999999998643 468888899999999999999999999999999999
Q ss_pred CcccchhccccCCceeeccccchhhh----------------------------------chhhHHHHHHHHhhhhccCC
Q psy2378 855 YESQHNLNYWKFGDYLGNSIAKSKKI----------------------------------EKKCLIFEFMLNALRLKDGF 900 (956)
Q Consensus 855 ~~s~hn~~yw~~~~ylg~g~~~~~~~----------------------------------~~~~~~~e~~~~~lr~~~gi 900 (956)
++|+||.+||+..+|+|+|+++.+.+ +..+...|.++++||+.+|+
T Consensus 260 ~~~~hn~~~w~~~~~lg~G~gA~s~l~~~~~~~r~~n~~~l~~Y~~~i~~~~~~~~~~~ls~~~~~~~~~~l~LR~~~Gl 339 (394)
T PRK08898 260 RQCRHNLNYWQFGDYLGIGAGAHGKLSFPDRILRQMRYKHPATYLEQAKAGTAVQEEREVGARDLPFEFMLNALRLTDGV 339 (394)
T ss_pred ccchhHHHHhCCCCEEEECCCeeeeecCCCceEEeecCCCHHHHHHHHHcCCCccceeecCHhhHHHHHHHHHHHHhCCc
Confidence 99999999999999999998764221 12345678899999999999
Q ss_pred ChhhHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhh
Q psy2378 901 SPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954 (956)
Q Consensus 901 ~~~~~~~~~g~~~~~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 954 (956)
|+..|.++||.+++.+...|+.|+++||+..++++++||++|++|+|+|+..|+
T Consensus 340 d~~~f~~~~g~~~~~~~~~l~~l~~~gll~~~~~~~~LT~~G~~~~d~i~~~~~ 393 (394)
T PRK08898 340 PAHLFQERTGLPLAAIEPQLAAAEQRGLLERDHTRIRPTPLGQRFLNDLQELFL 393 (394)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEEChhHhHHHHHHHHHHh
Confidence 999999999998777777999999999999999999999999999999999987
No 7
>PRK05660 HemN family oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-55 Score=501.97 Aligned_cols=333 Identities=41% Similarity=0.661 Sum_probs=302.2
Q ss_pred CCCCCcceeeeeeecccccCC--cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 622 YKIPYKVIINEAIELVKSFGN--IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~--~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
.++|+|+.+|.||.+.+.... ....+|++++++||+..........+++||||||||+.++++.+.++++.+++.+++
T Consensus 11 iHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 11 IHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPF 90 (378)
T ss_pred EEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCC
Confidence 789999999999998664322 224679999999998644333345799999999999999999999999999999988
Q ss_pred CCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCC
Q psy2378 700 KKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPN 778 (956)
Q Consensus 700 ~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPg 778 (956)
....++|+|+||++++++.++.|+++|++||||||||+++++|+.++|.|+.+++.++++.+++.|+ ++++|||+|+||
T Consensus 91 ~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg 170 (378)
T PRK05660 91 APDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD 170 (378)
T ss_pred CCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 7778999999999999999999999999999999999999999999999999999999999999865 689999999999
Q ss_pred CCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCccc
Q psy2378 779 QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQ 858 (956)
Q Consensus 779 qT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~s~ 858 (956)
||.++|+++++++.+++|+||++|+|+++|||++++.. ...|++++.++||..+.+.|.++||.|||++||+|||++|+
T Consensus 171 qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~-~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~~~~~ 249 (378)
T PRK05660 171 QSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRP-PVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQ 249 (378)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccC-CCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCCChhHH
Confidence 99999999999999999999999999999999998752 34688888999999999999999999999999999999999
Q ss_pred chhccccCCceeeccccchhhh-------------------------------chhhHHHHHHHHhhhhccCCChhhHHH
Q psy2378 859 HNLNYWKFGDYLGNSIAKSKKI-------------------------------EKKCLIFEFMLNALRLKDGFSPNLFFE 907 (956)
Q Consensus 859 hn~~yw~~~~ylg~g~~~~~~~-------------------------------~~~~~~~e~~~~~lr~~~gi~~~~~~~ 907 (956)
||..||+..+|+|+|++|.+.+ +..+...|.++++||+.+|+|+..|.+
T Consensus 250 hn~~~w~~~~~lg~G~gA~s~~~~~~~~~~r~~n~~~~~~y~~~~~~~~~~~l~~~~~~~e~~~~~Lr~~~G~~~~~~~~ 329 (378)
T PRK05660 250 HNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYMQGRYLDGQRDVEAADRPFEFFMNRFRLLEAAPRADFEA 329 (378)
T ss_pred HHHHHhcCCCEEEEcCCccccccCCCCceeeEeecCCHHHHHhcCCCcccccCChhhHHHHHHHHhchhccCCCHHHHHH
Confidence 9999999999999998765322 122356789999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 908 RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 908 ~~g~~~~~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
+||.++......++.|.++||+..++++++||++|++++|+|+..|++
T Consensus 330 ~~g~~~~~~~~~l~~l~~~gl~~~~~~~~~lt~~G~~~~d~i~~~~~~ 377 (378)
T PRK05660 330 YTGLPESVIRPQLDEALAQGYLTETADHWQITEHGKLFLNDLLELFLA 377 (378)
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEeCCEEEECcchhHHHHHHHHHHhc
Confidence 999998767779999999999999999999999999999999999986
No 8
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.4e-55 Score=497.68 Aligned_cols=325 Identities=30% Similarity=0.464 Sum_probs=289.1
Q ss_pred cccCCCCCcceeeeeeeccccc-CCcchHHHHHHHHHH-HhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSF-GNIDEKKYLEALLID-VELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 696 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~-~~~~~~~~v~~vl~e-I~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~ 696 (956)
+| .++|||..+|.||.+.+.. ......+|++++++| +...........++++|||||||+.++++.+.++++.+++.
T Consensus 9 lY-iHIPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~ 87 (370)
T PRK06294 9 LY-IHIPFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPPALIQDILKTLEAP 87 (370)
T ss_pred EE-EEeCCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCHHHHHHHHHHHHhC
Confidence 34 6899999999999987653 223356799999999 55443333345689999999999999999999999999763
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeec
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYA 775 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~G 775 (956)
+..++|+|+||++++++.++.|+++|++|+||||||+|+++|+.+||.|+.+++.++++.+++.++ ++++|||+|
T Consensus 88 ----~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~G 163 (370)
T PRK06294 88 ----HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYG 163 (370)
T ss_pred ----CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 457999999999999999999999999999999999999999999999999999999999999865 699999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcC
Q psy2378 776 LPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 852 (956)
Q Consensus 776 lPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far 852 (956)
+||||.++|+++++++.+++|+||++|+|+++|||++++. ....+|++++..+||..+.+.|.++||.|||++||+|
T Consensus 164 lPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~ 243 (370)
T PRK06294 164 LPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELASYAK 243 (370)
T ss_pred CCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeeeeeC
Confidence 9999999999999999999999999999999999999874 3455788888999999999999999999999999999
Q ss_pred CCCcccchhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccCCC
Q psy2378 853 TGYESQHNLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDGFS 901 (956)
Q Consensus 853 ~g~~s~hn~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~gi~ 901 (956)
||++|+||..||...+|+|+|++|.+. ++..+.+.|.++++||+.+|++
T Consensus 244 ~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~~r~~n~~~l~~Y~~~~~~~~~p~~~~~~l~~~~~~~e~~~~~Lr~~~Gi~ 323 (370)
T PRK06294 244 PQAQSKHNTYYWTDRPFLGLGVSASQYLHGIRSKNLSRISHYLRALRKNLPTQESSEELPPNERIKEALALRLRLCEGIP 323 (370)
T ss_pred CCchhhhhhhhccCCCEEEEcCCcceecCCEEEEcCCCHHHHHHHHHcCCCCcccceeCCHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999999999886421 2345677899999999999999
Q ss_pred hhhHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhh
Q psy2378 902 PNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954 (956)
Q Consensus 902 ~~~~~~~~g~~~~~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 954 (956)
++.|..+ .+.+.++.|+++||+..++++++||++|++|+|+|+.+|+
T Consensus 324 ~~~~~~~------~~~~~l~~~~~~gll~~~~~~i~lT~~G~~~~~~i~~~~~ 370 (370)
T PRK06294 324 LADFPSE------LTSELIMHPIIQELFTKNDQALSLNKKGRLFHDTIAEEIM 370 (370)
T ss_pred HHHHHHH------HHHHHHHHHHHCCCEEEECCEEEECcchhhHHHHHHHHhC
Confidence 9988664 2457889999999999999999999999999999999986
No 9
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=1.2e-55 Score=491.26 Aligned_cols=306 Identities=50% Similarity=0.832 Sum_probs=272.6
Q ss_pred CccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CCchhccccCCCCCCEEEEecCCCHHHHHH
Q psy2378 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAK 80 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~ 80 (956)
++-...+.+++++||||+|+||.+||.+|+.+|+.+++||||++++.++ +....++..++.+.|+++||+|++|+.|++
T Consensus 2 ~~~~~~~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~ 81 (333)
T PRK11815 2 PEKMSKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAE 81 (333)
T ss_pred CcccccCCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHH
Confidence 3334433388999999999999999999999997799999999999999 556667888999999999999999999999
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 160 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~ 160 (956)
||++++++|||+||||||||.+|+++++||++|++||+++.+|++++++++++||+||+|+|+++..+.+++.++++.++
T Consensus 82 aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~ 161 (333)
T PRK11815 82 AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVA 161 (333)
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988766667899999999
Q ss_pred HcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccccCCc
Q psy2378 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240 (956)
Q Consensus 161 ~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l~~P~ 240 (956)
++|+++|+||+|+.+.+|++|..+++.+|++|++++++++.++++|||+||||.|++|++++++.||+||||||+++|||
T Consensus 162 ~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 162 EAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPY 241 (333)
T ss_pred HhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEEcHHHHhCCH
Confidence 99999999999998788998888889999999999999998768999999999999999999988999999999999999
Q ss_pred chHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccc
Q psy2378 241 LMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK 320 (956)
Q Consensus 241 l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~ 320 (956)
+|+++++.+++... +.+++.|+++.+++|.+...+. .+ .....++|+.+|++|+ +.+.+++-.++..
T Consensus 242 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~rk~~~~y~~~~-------~~~~~~r~~~~~~ 308 (333)
T PRK11815 242 LLAEVDRELFGEPA--PPLSRSEVLEAMLPYIERHLAQ---GG-RLNHITRHMLGLFQGL-------PGARAWRRYLSEN 308 (333)
T ss_pred HHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHc---Cc-hHHHHHHHHHHHHcCC-------CCHHHHHHHHHhh
Confidence 99999987775433 4578999999999998865541 11 2356888999999998 6777777766553
No 10
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-56 Score=487.96 Aligned_cols=293 Identities=32% Similarity=0.515 Sum_probs=254.0
Q ss_pred CccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CCchh--ccccCCCCCCEEEEecCCCHHHH
Q psy2378 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKH--CLDFNAEEHPIAFQVGDNEPKKL 78 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~~~~--~~~~~~~~~p~~vQl~g~~~~~~ 78 (956)
.|++..+ +++++||||+|+||.+||++++++|+.|++||||+++++++ +.... .+...+.+.|+++||+|++|+.+
T Consensus 3 ~~~~~~~-~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l 81 (323)
T COG0042 3 KIGLIEL-RNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELL 81 (323)
T ss_pred ccccccc-cCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHH
Confidence 4566677 99999999999999999999999995599999999999999 54333 33334669999999999999999
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVG 157 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~~~a~ 157 (956)
++||+.+.+.|+|+||||||||++++.+.++|++||++|+++.+||++++++++ +|||||||+||++.+. ...++++
T Consensus 82 ~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~--~~~~ia~ 159 (323)
T COG0042 82 AEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI--LALEIAR 159 (323)
T ss_pred HHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc--cHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 9999999999988762 3678999
Q ss_pred HHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcccc
Q psy2378 158 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA 235 (956)
Q Consensus 158 ~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~ 235 (956)
.++++|+++|+||+||+ .++|.++++|++|+++++.++++|||+||||.|++|+.++++. ||+||+|||+
T Consensus 160 ~~~~~g~~~ltVHgRtr--------~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 160 ILEDAGADALTVHGRTR--------AQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred HHHhcCCCEEEEecccH--------HhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 99999999999999996 4455567999999999999955999999999999999999998 9999999999
Q ss_pred ccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccC
Q psy2378 236 YKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKL 315 (956)
Q Consensus 236 l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l 315 (956)
++|||+|+++ +.+.+.+. .++++.|+.+.+.+|.+...+... ........+|+.+|.+|+ +.+.+++-
T Consensus 232 ~~nP~l~~~i-~~~~~g~~--~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~~~-------~~a~~~r~ 299 (323)
T COG0042 232 LGNPWLFRQI-DYLETGEL--LPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLKGL-------PGARELRR 299 (323)
T ss_pred ccCCcHHHHH-HHhhcCCC--CCCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhcC-------ccHHHHHH
Confidence 9999999999 44444443 238899999999999887666543 344456888999999998 45555555
Q ss_pred cc
Q psy2378 316 DM 317 (956)
Q Consensus 316 ~~ 317 (956)
..
T Consensus 300 ~~ 301 (323)
T COG0042 300 AL 301 (323)
T ss_pred HH
Confidence 43
No 11
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.1e-55 Score=505.63 Aligned_cols=333 Identities=22% Similarity=0.268 Sum_probs=299.1
Q ss_pred cccCCCCCcceeeeeeeccccc-CCcchHHHHHHHHHHHhhhccc--ccccceeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSF-GNIDEKKYLEALLIDVELSLPI--ILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~-~~~~~~~~v~~vl~eI~~~~~~--~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~ 695 (956)
+| .++|||+.+|.||.+.+.. ......+|++++++||+...+. .....+++||||||||+.|+++++.++++.+++
T Consensus 64 lY-iHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~~~l~~ll~~i~~ 142 (449)
T PRK09058 64 LY-IHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSAEDLARLITALRE 142 (449)
T ss_pred EE-EEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCHHHHHHHHHHHHH
Confidence 45 7899999999999986542 2334678999999999876542 123569999999999999999999999999999
Q ss_pred HcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC-CeeEEEEee
Q psy2378 696 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIY 774 (956)
Q Consensus 696 ~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~-~~i~~dlI~ 774 (956)
.+++..+.++|+|+||+.+|+|.++.|+++|||||||||||||+++|+.+||.|+.+++.++++.+++.+ .++++||||
T Consensus 143 ~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~ 222 (449)
T PRK09058 143 YLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIF 222 (449)
T ss_pred hCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 9998888999999999999999999999999999999999999999999999999999999999999985 899999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCC-CHHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMP-SNDENAVMQDKITSLLKNNYYKNYEISAY 850 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~yeis~f 850 (956)
|+||||.++|++|++++.+++|+||++|+|+++|||++++. +..+.| +.++..+||..+.+.|.++||.|||++||
T Consensus 223 GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~yeis~f 302 (449)
T PRK09058 223 GLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQLSNSHW 302 (449)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEeeeee
Confidence 99999999999999999999999999999999999999874 445566 88999999999999999999999999999
Q ss_pred cCCCC-cccchhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhcc
Q psy2378 851 SKTGY-ESQHNLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKD 898 (956)
Q Consensus 851 ar~g~-~s~hn~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~ 898 (956)
+|||+ +|+||..||+..+|+|+|+++.+. ++..+...+.++++||. .
T Consensus 303 ar~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~~~l~~Y~~~i~~~~~p~~~~~~~~~~~~~~~~i~~~l~~-~ 381 (449)
T PRK09058 303 ARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGYSYMNHRDLDTYHEAIAAGQKPLMMMMRASPNAPLRAALKAGLER-G 381 (449)
T ss_pred ecCCccccHHHHHHcCCCCEEEEccCcccccCCEEEECCCCHHHHHHHHHcCCCchhhcccCCHHHHHHHHHHHHhhc-C
Confidence 99996 599999999999999999886422 12345667899999998 4
Q ss_pred CCChhhHHHHhCCCHH-HHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 899 GFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 899 gi~~~~~~~~~g~~~~-~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
|++++.|. ||.++. .+...|+.|+++||++.++++++||++|++|+|+|+..|+.
T Consensus 382 ~l~~~~~~--~g~~~~~~~~~~l~~~~~~Gll~~~~~~l~lT~~G~~~~~~i~~~~~~ 437 (449)
T PRK09058 382 RLDLSELA--LGTPHADHLAPLLAQWQQAGLVELSSDCLRLTLAGRFWAVNLTQGLIE 437 (449)
T ss_pred CccHHHhh--cCCcHHHHHHHHHHHHHHCCCEEEECCEEEECCCcccHHHHHHHHHHH
Confidence 99999998 998875 46678999999999999999999999999999999998864
No 12
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.4e-54 Score=484.45 Aligned_cols=319 Identities=27% Similarity=0.424 Sum_probs=279.2
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
.++|+|+.+|.||.+.+.........|+++.+++++...+.+....+++||||||||+.|+++.++++++.+++.+ ..
T Consensus 11 iHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~--~~ 88 (353)
T PRK05904 11 IHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLSTIKPYV--DN 88 (353)
T ss_pred EEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCHHHHHHHHHHHHHhc--CC
Confidence 6899999999999988764332233455555555554332233456899999999999999999999999999885 45
Q ss_pred CceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCCC
Q psy2378 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQT 780 (956)
Q Consensus 702 ~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgqT 780 (956)
..++++|+||+.+++|.++.|+++|++|||+|+||++|++|+.|||.|+.+++.++++.+++.|+ ++++|||+|+||||
T Consensus 89 ~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt 168 (353)
T PRK05904 89 NCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILK 168 (353)
T ss_pred CCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999965 59999999999999
Q ss_pred HHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcC-CCCcccc
Q psy2378 781 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK-TGYESQH 859 (956)
Q Consensus 781 ~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far-~g~~s~h 859 (956)
.++|++|++++.+++|+|+++|+|+++|||++++... .++++...+++..+.+.|.+.||.|||+|||+| ||++|+|
T Consensus 169 ~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~--~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~~h 246 (353)
T PRK05904 169 LKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY--TIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYISKH 246 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCC--CCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccccc
Confidence 9999999999999999999999999999999998642 356778889999999999999999999999999 8999999
Q ss_pred hhccccCCceeeccccchhh---------------------hchhhHHHHHHHHhhhhccCCChhhHHHHhCCCHH-HHH
Q psy2378 860 NLNYWKFGDYLGNSIAKSKK---------------------IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIK-IIE 917 (956)
Q Consensus 860 n~~yw~~~~ylg~g~~~~~~---------------------~~~~~~~~e~~~~~lr~~~gi~~~~~~~~~g~~~~-~~~ 917 (956)
|..||+.++|+|+|++|++. ++..+.+.|+++++||+.+||++..|. |.++. .+.
T Consensus 247 n~~yw~~~~ylg~G~gA~s~~~~~r~~n~~~~~~y~~~~~~l~~~e~~~e~~~l~Lr~~~Gi~~~~~~---~~~~~~~~~ 323 (353)
T PRK05904 247 NLAYWRTKDWAAIGWGAHGFENNIEYFFDGSIQNWILIKKVLTDHELYQQILIMGLRLKDGLDLNKEI---NKEAYLYFK 323 (353)
T ss_pred hHhHhCCCCEEEEcCCcCcccCCeEEEeCCCHHHHhhcCcCCCHHHHHHHHHHHHHHhhCCccHHHhc---CCCHHHHHH
Confidence 99999999999999987532 245577889999999999999999998 87775 345
Q ss_pred HHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhh
Q psy2378 918 SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954 (956)
Q Consensus 918 ~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 954 (956)
+.++. |+..++++++|| |++++|.|+.+|+
T Consensus 324 ~~~~~-----~l~~~~~~~~~t--g~~~~~~~~~~~~ 353 (353)
T PRK05904 324 NKLKH-----ISINKNNHLRAD--NIDLLNLSIIDIF 353 (353)
T ss_pred HHHHH-----HHhhcCCEEEEE--cHhHHHHHHHHhC
Confidence 55655 888899999999 9999999999885
No 13
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=5.4e-54 Score=489.53 Aligned_cols=326 Identities=26% Similarity=0.405 Sum_probs=294.9
Q ss_pred CCCCCcceeeeeeecccccCC-----cchHHHHHHHHHHHhhhcccc--cccceeEEEecCCCCCCCCHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGN-----IDEKKYLEALLIDVELSLPII--LNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 694 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~-----~~~~~~v~~vl~eI~~~~~~~--~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~ 694 (956)
.++|||+.+|.||.+.+.... ....+|++++.+||+.....+ ....++++|||||||+.+++..+.++++.++
T Consensus 7 iHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~ 86 (375)
T PRK05628 7 VHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVR 86 (375)
T ss_pred EEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHH
Confidence 689999999999998664332 235789999999998876544 2456899999999999999999999999999
Q ss_pred HHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCe-eEEEEe
Q psy2378 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNN-FNLDLI 773 (956)
Q Consensus 695 ~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~-i~~dlI 773 (956)
+.+++....++++|+||+.+++|.++.|+++|++|||+|+||+|+++|+.|||.|+.+++.++++.+++.++. +++|||
T Consensus 87 ~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli 166 (375)
T PRK05628 87 DTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLI 166 (375)
T ss_pred HhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9888877789999999999999999999999999999999999999999999999999999999999998664 999999
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 850 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~f 850 (956)
+|+||||.++|++|++++.+++|+|+++|+|+++|||++++. +....|+.++..++|..+.+.|.+.||.+|+++||
T Consensus 167 ~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~f 246 (375)
T PRK05628 167 YGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSNW 246 (375)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeeccc
Confidence 999999999999999999999999999999999999999875 44566788888999999999999999999999999
Q ss_pred cCCCCcccchhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccC
Q psy2378 851 SKTGYESQHNLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDG 899 (956)
Q Consensus 851 ar~g~~s~hn~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~g 899 (956)
+|||++|+||..||...+|+|+|++|.+. ++..+...|.++++||+.+|
T Consensus 247 a~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~n~~~l~~Y~~~v~~~~~p~~~~~~l~~~~~~~e~l~~~lr~~~g 326 (375)
T PRK05628 247 ARPGGECRHNLGYWRGGDWWGAGPGAHSHVGGVRWWNVKHPAAYAARLAAGALPVAGREVLDAEDRHVERVMLGLRLREG 326 (375)
T ss_pred cCCCcccccchhhcCCCCEEEEccCcccccCCEEEEcCCCHHHHHHHHHcCCCCcceeeeCCHHHHHHHHHHhccccccC
Confidence 99999999999999999999999886421 23456678999999999999
Q ss_pred CChhhHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhh
Q psy2378 900 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954 (956)
Q Consensus 900 i~~~~~~~~~g~~~~~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 954 (956)
+++..|...+ ...++.|+++|++..++++++||++|++|+|+|++.|+
T Consensus 327 ~~~~~~~~~~-------~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~~~ 374 (375)
T PRK05628 327 LPLALLDAAE-------RARAARVVADGLLAAEGGRLVLTLRGRLLADAVVRDLL 374 (375)
T ss_pred CCHHHHHHHH-------HHHHHHHHHCCCEEEECCEEEEChhhhHHHHHHHHHHh
Confidence 9998887653 46788999999999999999999999999999999986
No 14
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=9.7e-54 Score=487.91 Aligned_cols=329 Identities=34% Similarity=0.509 Sum_probs=297.7
Q ss_pred CCCCCcceeeeeeecccccCCc-chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 622 YKIPYKVIINEAIELVKSFGNI-DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~-~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.++|+|+.+|.||.+++..+.. ...+|++++++||+... ....+++||||||||++++++.++.+++.+.+ +...
T Consensus 8 iHiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~---~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~-~~~~ 83 (374)
T PRK05799 8 IHIPFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNST---KNKKIKSIFIGGGTPTYLSLEALEILKETIKK-LNKK 83 (374)
T ss_pred EEeCCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhc---CCCceeEEEECCCcccCCCHHHHHHHHHHHHh-CCCC
Confidence 6899999999999987765443 35679999999997432 23458899999999999999999999999865 5666
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgq 779 (956)
+..++++|+||+.++++.++.|+++|++|||||+||++|++|+.+||.|+.+++.++++.+++.++ ++++|+|+|+|||
T Consensus 84 ~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 84 EDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999965 6999999999999
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCc
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYE 856 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~ 856 (956)
|.++|+++++++.+++|+|+++|+|+++|||+++++ +....|+.++..+||..+.+.|.++||.|||++||+|||++
T Consensus 164 t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~~~~ 243 (374)
T PRK05799 164 TLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKPGKE 243 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECCCcc
Confidence 999999999999999999999999999999999875 34667888999999999999999999999999999999999
Q ss_pred ccchhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccCCChhhH
Q psy2378 857 SQHNLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDGFSPNLF 905 (956)
Q Consensus 857 s~hn~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~gi~~~~~ 905 (956)
|+||..||+..+|+|+|+++.+. ++..+...+.++++||+.+|++...|
T Consensus 244 ~~hn~~yw~~~~~~g~G~gA~s~~~~~~~~n~~~~~~y~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~lr~~~g~~~~~~ 323 (374)
T PRK05799 244 CRHNLVYWDLEEYIGCGAGAHSYVNGKRYENISNIEKYIKEINENNSAVEEIHKNSIKDNMEEFMFMGLRKIKGICIEDF 323 (374)
T ss_pred hhhHHHHhcCCCEEEEcCCccccCCCEEEecCCCHHHHHHHHhcCCCccceeeeCCHhHHHHHHHHHHHHhhCCcCHHHH
Confidence 99999999999999999986421 12345678999999999999999999
Q ss_pred HHHhCCCHH-HHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhh
Q psy2378 906 FERTGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954 (956)
Q Consensus 906 ~~~~g~~~~-~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 954 (956)
.++||.++. .+...++.|+++||+..++++++||++|++++|+|+..|+
T Consensus 324 ~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~~~ 373 (374)
T PRK05799 324 KKRFGKNIYEVYGEVINKYIKLGLLIEKEGRIYLSERGIEVSNSIMSDFL 373 (374)
T ss_pred HHHHCcCHHHHHHHHHHHHHHCCCEEEECCEEEEChhHHHHHHHHHHHHh
Confidence 999999875 5777899999999999999999999999999999999986
No 15
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.7e-53 Score=477.80 Aligned_cols=318 Identities=31% Similarity=0.428 Sum_probs=281.7
Q ss_pred CCCCCcceeeeeeecccccC-CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 622 YKIPYKVIINEAIELVKSFG-NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~-~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.++|||+.+|.||.+.+... .....+|++++++||+...+.++..++++||||||||+.++++++.++++.+.+. +.
T Consensus 5 iHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~--~~ 82 (350)
T PRK08446 5 IHIPFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPY--LS 82 (350)
T ss_pred EEeCCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh--cC
Confidence 68999999999999866532 2346789999999998654434445689999999999999999999999999887 45
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgq 779 (956)
...++|+|+||+.++++.++.|+++|++||||||||+++++|+.+||.|+.+++.++++.+++.|+ ++++|||+|+|||
T Consensus 83 ~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 83 KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 567999999999999999999999999999999999999999999999999999999999999965 6999999999999
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCcccc
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQH 859 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~s~h 859 (956)
|.++|+++++++.+++|+|+++|+|+++|||++++..+.. ++++ +|+..+.+.|.++||.|||++||+| |++|+|
T Consensus 163 t~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~-~~~~---~~~~~~~~~l~~~Gy~~yeis~fa~-~~~~~h 237 (350)
T PRK08446 163 NKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKK-KDDE---NLAKFFIEQLEELGFKQYEISNFGK-NYQCKH 237 (350)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcC-CCHH---HHHHHHHHHHHHCCCcEEEeehhhC-cchhhh
Confidence 9999999999999999999999999999999998864322 3333 4889999999999999999999999 999999
Q ss_pred hhccccCCceeeccccchhh--------------------------hchhhHHHHHHHHhhhhccCCChhhHHHHhCCCH
Q psy2378 860 NLNYWKFGDYLGNSIAKSKK--------------------------IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINI 913 (956)
Q Consensus 860 n~~yw~~~~ylg~g~~~~~~--------------------------~~~~~~~~e~~~~~lr~~~gi~~~~~~~~~g~~~ 913 (956)
|..||+.++|+|+|++|.+. ++..+...|.++++||+.+|++++.|..+
T Consensus 238 n~~yw~~~~~lg~G~gA~s~~~~~~~~n~~~~~~y~~~~~~~~~~~l~~~~~~~e~~~~~Lr~~~g~~~~~~~~~----- 312 (350)
T PRK08446 238 NLGYWQGKDYLGCGAGAVGFVANKRFYPKKNLENYIKNPLKREIETLSEEDLRLEKLFLGLRSIVGVDLSILNQK----- 312 (350)
T ss_pred HHHHhCCCCEEEEcCCcccccCCeEEEecCCHHHHHhchhhcccccCCHHHHHHHHHHHHHHhhCCcCHHHHHHH-----
Confidence 99999999999999886422 23456678999999999999999998765
Q ss_pred HHHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 914 KIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 914 ~~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
..+.++.|+++||+..++++ ||++|++++|.|+..|++
T Consensus 313 --~~~~l~~l~~~gl~~~~~~~--l~~~g~~~~d~i~~~~~~ 350 (350)
T PRK08446 313 --EEKKVKILIEENKLFIKNNR--LYNKDFFLADEIALFLLS 350 (350)
T ss_pred --HHHHHHHHHHCCCEEeeCCE--EcccchhhHHHHHHHhhC
Confidence 35688999999999999998 578999999999998764
No 16
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.3e-53 Score=482.08 Aligned_cols=333 Identities=34% Similarity=0.538 Sum_probs=301.6
Q ss_pred CCCCCcceeeeeeeccccc-CCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 622 YKIPYKVIINEAIELVKSF-GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~-~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.++|+|+.+|.||.+.+.. .+....+|++++++|++.... .+...++++|||||||+.++.+++.++++.+++.+++.
T Consensus 6 ihiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~-~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~ 84 (377)
T PRK08599 6 IHIPFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAI-RPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS 84 (377)
T ss_pred EEeCCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhh-cCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC
Confidence 6799999999999987653 333467899999999965432 33457899999999999999999999999999988876
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgq 779 (956)
...++++++||+.++++.++.|+++|++|+|+|+||+|+++|+.|+|+|+.+++.++++.+++.|+ ++++|+|+|+|||
T Consensus 85 ~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 85 GLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 667999999999999999999999999999999999999999999999999999999999999965 5899999999999
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCc
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYE 856 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~ 856 (956)
|.++|.++++++.+++|+|+++|+|+++|||++++. +....|+.+...++|..+.+.|.++||.||++++|+|||++
T Consensus 165 t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~fa~~~~~ 244 (377)
T PRK08599 165 TIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNFAKPGFE 244 (377)
T ss_pred CHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeeeeCCChH
Confidence 999999999999999999999999999999999864 44557888888999999999999999999999999999999
Q ss_pred ccchhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccCCChhhH
Q psy2378 857 SQHNLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDGFSPNLF 905 (956)
Q Consensus 857 s~hn~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~gi~~~~~ 905 (956)
|+||..||...+|+|+|+++.+. ++..+...+.++++||+.+|++.+.|
T Consensus 245 ~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~~~~~~Y~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~Lr~~~gl~~~~~ 324 (377)
T PRK08599 245 SRHNLTYWNNEEYYGFGAGASGYVNGVRYQNIGPIKHYLKAINEEGLPRLEEHVLTKKEQMEEEMFLGLRKKSGVSKARF 324 (377)
T ss_pred HHHHHHHhcCCcEEEEccCcccccCCEEEEcCCCHHHHHHHHhcCCCccceeeeCCHHHHHHHHHHHhHHhhCCcCHHHH
Confidence 99999999999999999886422 22345678999999999999999999
Q ss_pred HHHhCCCHH-HHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 906 FERTGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 906 ~~~~g~~~~-~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
.++||.++. .+...++.|+++||+..++++++||++|++|+|+|+..|+-
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~lt~~G~~~~~~i~~~~~~ 375 (377)
T PRK08599 325 EEKFGQSFEDVFGETIQELQEQGLLEEDDDHVRLTKKGKFLGNEVFEAFLL 375 (377)
T ss_pred HHHHCcCHHHHHHHHHHHHHHCCCEEEECCEEEECccHhHHHHHHHHHHhh
Confidence 999999876 46778999999999999999999999999999999999974
No 17
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=8.6e-54 Score=469.95 Aligned_cols=284 Identities=22% Similarity=0.299 Sum_probs=240.4
Q ss_pred ceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CC--ch---hccc---cCCCCCCEEEEecCCCHHHHHHHH
Q psy2378 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KK---HCLD---FNAEEHPIAFQVGDNEPKKLAKSA 82 (956)
Q Consensus 12 ~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~--~~---~~~~---~~~~~~p~~vQl~g~~~~~~~~aA 82 (956)
+++||||+|+||.+||.+|+++|++|++||||++++++. +. +. ..+. .++++.|+++||+|++|++|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 689999999999999999999997899999999998887 32 21 1222 567889999999999999999999
Q ss_pred HHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccCCCCCCcHHHHHHHHHHHH
Q psy2378 83 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDFVRDFVGTVS 160 (956)
Q Consensus 83 ~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~~~~~a~~l~ 160 (956)
++++++|||+||||||||++++.+.|+|++|++||+++.+|+++|+++++ +||+||+|+||++.+ +..++++.++
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~---~~~~~a~~l~ 158 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGE---RKFEIADAVQ 158 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCch---HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984 999999999997643 3679999999
Q ss_pred HcCCCEEEEcccccccccCCCCCCCCCCc-CcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcccccc
Q psy2378 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPI-LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYK 237 (956)
Q Consensus 161 ~~G~~~i~vh~r~~~~~g~~~~~~~~~~~-~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~ 237 (956)
++|+|+|+||+|+. . +.|.++ ++|++++++++.+ +||||+||||.|++|++++++. ||+||||||+++
T Consensus 159 ~~Gvd~i~Vh~Rt~-~-------~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 159 QAGATELVVHGRTK-E-------DGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred hcCCCEEEECCCCC-c-------cCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 99999999999984 2 333443 5999999999998 8999999999999999999976 999999999999
Q ss_pred CCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCcc
Q psy2378 238 NPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDM 317 (956)
Q Consensus 238 ~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~ 317 (956)
|||||++++. +. +.+++.|+++.+.+|.+...... .......++++|+.+|.+|+ +.+.+++-.+
T Consensus 230 nP~lf~~~~~---g~----~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~rk~~~~y~~~~-------~~~~~~r~~i 294 (312)
T PRK10550 230 IPNLSRVVKY---NE----PRMPWPEVVALLQKYTRLEKQGD-TGLYHVARIKQWLGYLRKEY-------DEATELFQEI 294 (312)
T ss_pred CcHHHHHhhc---CC----CCCCHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhcC-------CcHHHHHHHH
Confidence 9999999975 32 34688999888888765322110 11112244788999999998 6777887777
Q ss_pred ccccC
Q psy2378 318 MTKKN 322 (956)
Q Consensus 318 m~~~n 322 (956)
++.++
T Consensus 295 ~~~~~ 299 (312)
T PRK10550 295 RALNN 299 (312)
T ss_pred HcCCC
Confidence 76554
No 18
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=2.1e-53 Score=470.94 Aligned_cols=300 Identities=19% Similarity=0.278 Sum_probs=257.4
Q ss_pred CCccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc--C-CchhccccCCCCCCEEEEecCCCHHH
Q psy2378 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--G-NKKHCLDFNAEEHPIAFQVGDNEPKK 77 (956)
Q Consensus 1 ~~~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~--~-~~~~~~~~~~~~~p~~vQl~g~~~~~ 77 (956)
|.|++..+ +++++||||+|+||.+||.+|+++| +|++||||++++.+. + .....+...+++.|+++||+|++|++
T Consensus 1 ~~i~~~~~-~~~~~lAPM~g~td~~fR~l~~~~g-~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~ 78 (321)
T PRK10415 1 MRIGQYQL-RNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKE 78 (321)
T ss_pred CccCCccC-CCCEEecCCCCCCcHHHHHHHHHHC-CCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHH
Confidence 46788888 9999999999999999999999999 499999999999876 2 22334444567789999999999999
Q ss_pred HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHH
Q psy2378 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 157 (956)
Q Consensus 78 ~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~ 157 (956)
|+++|+++++.|+|+||||||||++++.+.++|++|++||+++.+|++++++++++||+||+|.||++.. .++.++++
T Consensus 79 ~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~~a~ 156 (321)
T PRK10415 79 MADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVEIAQ 156 (321)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998743 35789999
Q ss_pred HHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcccc
Q psy2378 158 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA 235 (956)
Q Consensus 158 ~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~ 235 (956)
.++++|+++|+||+|+. .+.+.++++|++++++++.+ ++|||+||||.|++|++++++. ||+||+|||+
T Consensus 157 ~le~~G~d~i~vh~rt~--------~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 157 LAEDCGIQALTIHGRTR--------ACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHHhCCCEEEEecCcc--------ccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHh
Confidence 99999999999999983 33445568999999999998 7999999999999999999985 9999999999
Q ss_pred ccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccC
Q psy2378 236 YKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKL 315 (956)
Q Consensus 236 l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l 315 (956)
++|||+|+++++.+..++. .+++++.|+++.+.+|.+...++.. .......+++|+.||++|+ +.+.+++.
T Consensus 228 l~nP~if~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rk~~~~y~~~~-------~~~~~~r~ 298 (321)
T PRK10415 228 QGRPWIFREIQHYLDTGEL-LPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEH-------APNDQFRR 298 (321)
T ss_pred hcCChHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHhcC-------CchHHHHH
Confidence 9999999999987654333 3568899999999999886555421 1122345888999999998 67777777
Q ss_pred ccccccC
Q psy2378 316 DMMTKKN 322 (956)
Q Consensus 316 ~~m~~~n 322 (956)
.++...+
T Consensus 299 ~~~~~~~ 305 (321)
T PRK10415 299 TFNAIED 305 (321)
T ss_pred HHHcCCC
Confidence 7766543
No 19
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=100.00 E-value=1.9e-52 Score=473.84 Aligned_cols=322 Identities=31% Similarity=0.435 Sum_probs=291.8
Q ss_pred CCCCCcceeeeeeecccccCC-cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 622 YKIPYKVIINEAIELVKSFGN-IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~-~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.++|+|+.+|.||.+.+.... ....+|++++++||......++...+++||||||||+.++++++.++++.+++.+++.
T Consensus 5 iHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~ 84 (360)
T TIGR00539 5 IHIPFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQHASLS 84 (360)
T ss_pred EEeCCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999998765322 2356799999999986544344456899999999999999999999999999988877
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgq 779 (956)
...++++|+||+.++++.++.|+++|++|||+|+||+++++|+.+||.|+.+++.++++.+++.|+ ++++|||+|+|||
T Consensus 85 ~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 85 DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 788999999999999999999999999999999999999999999999999999999999999976 6999999999999
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCcccc
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQH 859 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~s~h 859 (956)
|.++|.++++++.+++|+|+++|+|+|+|||++++..+. .|++++.++++..+.+.|.++||.+||++||+|||++|+|
T Consensus 165 t~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~~~~~h 243 (360)
T TIGR00539 165 TLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKK-LPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKAGYQVKH 243 (360)
T ss_pred CHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhc-CcCHHHHHHHHHHHHHHHHHcCCceeehhhhcCCCHHHHH
Confidence 999999999999999999999999999999999876432 6788889999999999999999999999999999999999
Q ss_pred hhccccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccCCChhhHHHH
Q psy2378 860 NLNYWKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDGFSPNLFFER 908 (956)
Q Consensus 860 n~~yw~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~gi~~~~~~~~ 908 (956)
|..||..++|+|+|++|.+. ++..+...|.++++||+.+|++++.|.++
T Consensus 244 n~~yw~~~~~lg~G~~A~s~~~~~~~~n~~~~~~Y~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~Lr~~~g~~~~~~~~~ 323 (360)
T TIGR00539 244 NLAYWGAKDYLGCGAGAHGCVANERFFAKKLIKNYIKDPLQRGVETLNEKNVPKQDKRLEKLFLGLRCVLGVEKSFFDEN 323 (360)
T ss_pred HHHhcCCCCEEEEcCCccccCCCeEEEecCCHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHhhCCcCHHHHHHH
Confidence 99999999999999876422 22456778999999999999999999999
Q ss_pred hCCCHH-HHHHHHHHHHHCCCeEEcCCEEeeCchhhc
Q psy2378 909 TGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRY 944 (956)
Q Consensus 909 ~g~~~~-~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~ 944 (956)
||.++. .+.+.++.++++|++..+++++.+|..|++
T Consensus 324 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~ 360 (360)
T TIGR00539 324 KGLSQVKFLIEENKAFIKNNRLINSDSFMADEHALWL 360 (360)
T ss_pred HCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEeehhhC
Confidence 999875 467789999999999999999999999985
No 20
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=1.6e-51 Score=475.42 Aligned_cols=331 Identities=24% Similarity=0.340 Sum_probs=298.6
Q ss_pred CCCCCcceeeeeeecccccCC--cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 622 YKIPYKVIINEAIELVKSFGN--IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~--~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
.++|+|+..|.||.+.+..+. ....+|++++++||+...+......+.++|||||||++++++++.+|++.+++.+++
T Consensus 44 vHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 44 IHIPFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred EEeCCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCC
Confidence 689999999999998765433 235789999999998765444445688999999999999999999999999998877
Q ss_pred CC-CceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCC
Q psy2378 700 KK-NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALP 777 (956)
Q Consensus 700 ~~-~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlP 777 (956)
.+ ..++++|+||+.++++.++.|+++|++|||||+||+++++|+.++|.|+.+++.++++.+++.++ .+++|||+|+|
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP 203 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP 203 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 55 57999999999999999999999999999999999999999999999999999999999999865 58999999999
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCcc
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYES 857 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~s 857 (956)
|||.++|+++++++.+++|+||++|+|+++|||++++.. .++.++..+||..+.+.|.++||.+|++++|+|+|++|
T Consensus 204 ~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~---~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~far~~~~~ 280 (430)
T PRK08208 204 GQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRA---RAWDDQRLSLYRLARDLLLEAGYTQTSMRMFRRNDAPD 280 (430)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhc---CCCHHHHHHHHHHHHHHHHHcCCeEEeecceecCCccc
Confidence 999999999999999999999999999999999998753 35678889999999999999999999999999999999
Q ss_pred cchhccc-cCCceeeccccchhhh--------------------------------------chhhHHHHHHHHhhhhcc
Q psy2378 858 QHNLNYW-KFGDYLGNSIAKSKKI--------------------------------------EKKCLIFEFMLNALRLKD 898 (956)
Q Consensus 858 ~hn~~yw-~~~~ylg~g~~~~~~~--------------------------------------~~~~~~~e~~~~~lr~~~ 898 (956)
+||..|| +.++|+|+|+++.+.+ +..+...++++++||+..
T Consensus 281 ~~~~~~~~~~~~~lG~G~gA~s~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~l~~~~~~~~~~~~~Lr~~~ 360 (430)
T PRK08208 281 KGAPAYSCQTDGMLGLGCGARSYTGNLHYSSPYAVNQQTIRSIIDDYIATPDFTVAEHGYLLSEDEMKRRFIIKSLLQAQ 360 (430)
T ss_pred CCCCccccCCCCEEEecCCeeecCCCCccccchhcccccccccHHHHHHhcCCCCceeeeeCCHHHHHHHHHHHHHHHhC
Confidence 9999995 8899999998764221 123456789999999999
Q ss_pred CCChhhHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 899 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 899 gi~~~~~~~~~g~~~~~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
|++++.|.++||.++......++.|+++||+..++++++||++|++|+|.|+..|++
T Consensus 361 gl~~~~~~~~~g~~~~~~~~~l~~l~~~gll~~~~~~l~lT~~G~~~~d~i~~~~~~ 417 (430)
T PRK08208 361 GLDLADYRQRFGSDPLRDFPELELLIDRGWLEQNGGRLRLTEEGLALSDAIGPVFIS 417 (430)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEECcchhhHHHHHHHHHcC
Confidence 999999999999987666678999999999999999999999999999999999975
No 21
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=1e-52 Score=463.38 Aligned_cols=251 Identities=31% Similarity=0.507 Sum_probs=192.6
Q ss_pred EEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CC--chhccccCCCCCCEEEEecCCCHHHHHHHHHHHHHcCC
Q psy2378 14 SIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY 90 (956)
Q Consensus 14 ~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~--~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G~ 90 (956)
+||||+|+||.+||.+++++|+.|++||||++++.++ +. ..+.+...+++.|+++||+|++|+.+++||+++.+.|+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 5899999999999999999998779999999999998 32 45577788889999999999999999999999999999
Q ss_pred CEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEc
Q psy2378 91 DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH 170 (956)
Q Consensus 91 d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh 170 (956)
|+||||||||++++.++|+|++|+++|+.+.+||+++++++++|||||+|+||++.. +++.++++.++++|+++|+||
T Consensus 81 ~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~--~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSP--EETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--C--HHHHHHHHHHHHTT--EEEEE
T ss_pred cEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccch--hHHHHHHHHhhhcccceEEEe
Confidence 999999999999999999999999999999999999999999999999999999543 468999999999999999999
Q ss_pred ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHHh
Q psy2378 171 ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 248 (956)
Q Consensus 171 ~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~~ 248 (956)
+||. .++|.++++|++++++++.+ +||||+||||+|++|+.++++. |||||||||++.|||+|++....
T Consensus 159 ~Rt~--------~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~ 229 (309)
T PF01207_consen 159 GRTR--------KQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQI 229 (309)
T ss_dssp CS-T--------TCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCH
T ss_pred cCch--------hhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhh
Confidence 9994 66777789999999999998 6999999999999999999987 99999999999999999963222
Q ss_pred hccCCCCCCCCCHHHHHHHHHhhhhcccc
Q psy2378 249 YYSNLPQYKIPTRIDIINLDSENRENEGD 277 (956)
Q Consensus 249 ~~~~~~~~~~~~~~e~~~~~~~~~e~egd 277 (956)
..+... +.++..+..+.+.+|.+....
T Consensus 230 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (309)
T PF01207_consen 230 KEGEPE--PFPPIAERLDIILRHYDYMEE 256 (309)
T ss_dssp HHHTT----S--HHHHHHHHHHHHHHHHH
T ss_pred ccCCCC--CCCchhHHHHHHHHHHHHHHH
Confidence 223222 234467777777777664433
No 22
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-52 Score=411.77 Aligned_cols=166 Identities=55% Similarity=0.877 Sum_probs=160.0
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|++++++.+|++.++||.+|++|++|++++++.+++|+||+|+..|++.++|+||||||++. |+|||||.||
T Consensus 25 edREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~n~~~~~taFtVsVd~~~-t~TGISa~DR 103 (203)
T COG0108 25 EDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDNNTDAHGTAFTVSVDARE-TTTGISAADR 103 (203)
T ss_pred CCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCccccccCCCCCCCceEEEEeccc-CcCCcCHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|.|||.|++++++|+||++|||||||+|++|||++|+||||||||||||||++|++||||||++||+|++ +++
T Consensus 104 a~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~ 183 (203)
T COG0108 104 ALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKE 183 (203)
T ss_pred HHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 468
Q ss_pred CceEEEEcCCcccH
Q psy2378 423 KNILHISVPGALEI 436 (956)
Q Consensus 423 ~~i~~~~vpg~~e~ 436 (956)
|+++++++..-+|.
T Consensus 184 h~l~~iti~dli~y 197 (203)
T COG0108 184 HGLPVITIEDLIEY 197 (203)
T ss_pred cCCcEEEHHHHHHH
Confidence 99999998766554
No 23
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.5e-49 Score=460.27 Aligned_cols=334 Identities=18% Similarity=0.305 Sum_probs=296.2
Q ss_pred cccCCCCCcceeeeeeecccccC--CcchHHHHHHHHHHHhhhccccc-ccceeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSFG--NIDEKKYLEALLIDVELSLPIIL-NRKIHTIFIGGGTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~~--~~~~~~~v~~vl~eI~~~~~~~~-~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~ 695 (956)
+| .++|+|+..|.||...+... ......|++++++||+.....+. ...+.++|||||||+.++++++.+|++.+++
T Consensus 53 LY-vHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~ 131 (453)
T PRK13347 53 LY-LHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRD 131 (453)
T ss_pred EE-EEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHH
Confidence 45 78999999999999765432 23356799999999987655443 3568999999999999999999999999999
Q ss_pred HcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEee
Q psy2378 696 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIY 774 (956)
Q Consensus 696 ~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~ 774 (956)
.+++....++++|+||+.+|++.++.|+++|++||||||||+++++|+.+||.|+.+++.++++.+++.|+ ++++|||+
T Consensus 132 ~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 132 AFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred hCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
Confidence 98887778999999999999999999999999999999999999999999999999999999999999865 69999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC--CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcC
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY--PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 852 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far 852 (956)
|+||||.++|.+|++++.+++|+||++|.|+..|++...+. ++..+|+.+++.+|+..+.+.|.++||.+|+++||+|
T Consensus 212 GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~~~~~far 291 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPIGLDHFAL 291 (453)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEEeccceeC
Confidence 99999999999999999999999999999997666443322 3556788999999999999999999999999999999
Q ss_pred CCCc----------ccchhccc--cCCceeeccccchhh-------------------------------hchhhHHHHH
Q psy2378 853 TGYE----------SQHNLNYW--KFGDYLGNSIAKSKK-------------------------------IEKKCLIFEF 889 (956)
Q Consensus 853 ~g~~----------s~hn~~yw--~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~ 889 (956)
|+++ |+||..|| ...+|+|+|+++.+. ++..+.+.+.
T Consensus 292 ~~~~~~~a~~~g~l~r~~~~Y~~~~~~~~lGlG~gA~s~~~~~~~~N~~~l~~Y~~~i~~g~~p~~~~~~l~~~~~~~~~ 371 (453)
T PRK13347 292 PDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGYVQNISSLKAYYRAIDAGRLPIERGYALSDDDRLRRA 371 (453)
T ss_pred CCchhhHHHhcCcccccccccCCCCCCcEEEECcCceeCCCCceEECCCCHHHHHHHHHCCCCCeeeeecCCHHHHHHHH
Confidence 9988 99999999 478999999876421 2345677899
Q ss_pred HHHhhhhccCCChhhHHHHhCCCHHHH---HHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHh
Q psy2378 890 MLNALRLKDGFSPNLFFERTGINIKII---ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 953 (956)
Q Consensus 890 ~~~~lr~~~gi~~~~~~~~~g~~~~~~---~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f 953 (956)
++++||+..|+|.+.|.++||.++..+ .+.|+.|+++||+..++++++||++|++|+|+|+..|
T Consensus 372 ~~~~L~~~~~ld~~~~~~~~g~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f 438 (453)
T PRK13347 372 IIETLMCNFPVDLAAIAARHGFFARYFLDELARLEPLAADGLVTIDGGGIRVTPEGRPLIRAVAAAF 438 (453)
T ss_pred HHHHHHhhCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECcchhHHHHHHHHHH
Confidence 999999999999999999999886532 4688999999999999999999999999999999877
No 24
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.7e-48 Score=447.74 Aligned_cols=324 Identities=22% Similarity=0.343 Sum_probs=281.5
Q ss_pred cccCCCCCcceeeeeeecccccC-CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 619 KSHYKIPYKVIINEAIELVKSFG-NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~~-~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
+| .++|+|..+|.||.+.+... ......|++++.+||+...+. ...++++|||||||+.+ ++.+.++++.+++.+
T Consensus 55 LY-vHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~--~~~~~siy~GGGTPs~l-~~~L~~ll~~i~~~f 130 (433)
T PRK08629 55 LY-AHVPFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTIL-EDELAKTLELAKKLF 130 (433)
T ss_pred EE-EEeCCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhc--CCceEEEEECCCccccC-HHHHHHHHHHHHHhC
Confidence 45 78999999999999876532 333567999999999876543 34689999999999998 688999999999987
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh---cCCeeEEEEee
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ---YFNNFNLDLIY 774 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~---~~~~i~~dlI~ 774 (956)
++ .+|++|+||++++++.++.|+++ |+|+|+|||||||++|+.|||.|+..+..++++.+++ .+.++++|||+
T Consensus 131 ~i---~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~ 206 (433)
T PRK08629 131 SI---KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIF 206 (433)
T ss_pred CC---ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEc
Confidence 54 49999999999999999999999 9999999999999999999999987666555555544 46789999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCC
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 854 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g 854 (956)
|+||||.++|++|++++.+++|+||++|+|+++|+|+.....+...|+.+...++|..+.+.|. ||.||++++|++++
T Consensus 207 GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~--Gy~~~s~~~f~~~~ 284 (433)
T PRK08629 207 NFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG--QYNQLSAWAFSKKN 284 (433)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC--CCeEecccccCCCC
Confidence 9999999999999999999999999999999999998765555667888888889999988888 99999999999987
Q ss_pred Ccccchhcc-ccCCceeeccccchhh-------------------------------hchhhHHHHHHHHhhhhccCCCh
Q psy2378 855 YESQHNLNY-WKFGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLNALRLKDGFSP 902 (956)
Q Consensus 855 ~~s~hn~~y-w~~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~~lr~~~gi~~ 902 (956)
. .||..| |...+|+|+|++|.+. ++..+.+.+.++++|| ..|+|+
T Consensus 285 ~--~~~~~y~~~~~~ylGlG~gA~s~~~~~~~~N~~~l~~Y~~~i~~g~~pv~~~~~ls~~e~~~~~~~~~L~-~~gld~ 361 (433)
T PRK08629 285 D--EGFDEYVIDYDEYLGVGSGSFSFLDGTLYVNTFSLRDYQERIAAGQMGVIAQKNFSKKEVMQYRFLLGMF-SGRLSI 361 (433)
T ss_pred c--hhhceeeccCCeEEEEcCCeeEecCCeEEEcCCCHHHHHHHHHcCCCCeeeeeeCCHHHHHHHHHHHHHH-hCCcCH
Confidence 5 578888 7799999999876421 2345667899999997 679999
Q ss_pred hhHHHHhCCCHH-HHHHHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 903 NLFFERTGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 903 ~~~~~~~g~~~~-~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
+.|.++||.++. .+..+++.|+..|++..++++|+||++|++++|.|+..|++
T Consensus 362 ~~f~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~~~~d~i~~~f~~ 415 (433)
T PRK08629 362 KYFRETFGVNLDKALFKEMLLLKLIGAIKNDPGDLIVTDFGKYLGVVMMKEFYT 415 (433)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCEEEECcchhHHHHHHHHHHHh
Confidence 999999999886 46789999999999999999999999999999999999985
No 25
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.1e-48 Score=451.52 Aligned_cols=334 Identities=20% Similarity=0.321 Sum_probs=293.2
Q ss_pred CCCCCcceeeeeeecccccCC--cchHHHHHHHHHHHhhhccccc-ccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcc
Q psy2378 622 YKIPYKVIINEAIELVKSFGN--IDEKKYLEALLIDVELSLPIIL-NRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~--~~~~~~v~~vl~eI~~~~~~~~-~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~ 698 (956)
.++|+|+.+|.||.+.+..+. ....+|++++++||+...+.+. ...+.++|||||||+.++++++.++++.+++.++
T Consensus 54 vHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~ 133 (453)
T PRK09249 54 VHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFN 133 (453)
T ss_pred EEeCCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCC
Confidence 679999999999998765432 2356899999999987655443 4568999999999999999999999999999988
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCC
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALP 777 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlP 777 (956)
+....++++|+||+.+++|.++.|+++|++|||||+||+++++|+.++|.++.+++.++++.+++.|+ ++++|||+|+|
T Consensus 134 ~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 213 (453)
T PRK09249 134 FAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP 213 (453)
T ss_pred CCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 77778999999999999999999999999999999999999999999999999999999999999976 89999999999
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC--CCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCC
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY--PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGY 855 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~ 855 (956)
|||.++|+++++++.+++|+|+++|.|++.|++..... ++...|+.++..+++..+.+.|.++||.+|++++|+|||+
T Consensus 214 gqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s~far~~~ 293 (453)
T PRK09249 214 KQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMDHFALPDD 293 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEeccceeCCCc
Confidence 99999999999999999999999999997776543222 2445688889999999999999999999999999999998
Q ss_pred c---ccchhcccc---------CCceeeccccchhh-------------------------------hchhhHHHHHHHH
Q psy2378 856 E---SQHNLNYWK---------FGDYLGNSIAKSKK-------------------------------IEKKCLIFEFMLN 892 (956)
Q Consensus 856 ~---s~hn~~yw~---------~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~~~~ 892 (956)
+ |+||.+||+ ..+|+|+|+++.+. ++..+...+.+++
T Consensus 294 ~~~~~~~n~~~~~~~~~y~~~~~~~~iglG~gA~s~~~~~~~~n~~~l~~Y~~~i~~~~~p~~~~~~ls~~~~~~~~~~~ 373 (453)
T PRK09249 294 ELAIAQREGTLHRNFQGYTTDGDCDLIGLGVSAISRIGDGYAQNEKDLKAYYAAVDAGRLPTARGHALTADDRLRRDVIE 373 (453)
T ss_pred hHHHHHHhCccccccceeccCCCCeEEEECcCcccCCCCeeeECCCCHHHHHHHHHCCCCCeeecccCCHHHHHHHHHHH
Confidence 6 899976665 36999999886422 1234567889999
Q ss_pred hhhhccCCChhhHHHHhCCCHHH-HH---HHHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhhc
Q psy2378 893 ALRLKDGFSPNLFFERTGINIKI-IE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955 (956)
Q Consensus 893 ~lr~~~gi~~~~~~~~~g~~~~~-~~---~~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 955 (956)
+||+..|+|.+.|.++||.++.. +. ..|+.|.+.||+..++++++||++|++|+|+|+..|..
T Consensus 374 ~Lr~~~gl~~~~~~~~fg~~~~~~~~~~~~~l~~l~~~gll~~~~~~~~lT~~G~~~~d~i~~~f~~ 440 (453)
T PRK09249 374 QLMCNFELDFAAIEAAFGIDFAEYFAEELERLAPLEADGLVELDENGITVTPKGRLLVRNIAMAFDA 440 (453)
T ss_pred HHhhcCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEECccchHHHHHHHHHHHH
Confidence 99999999999999999998753 43 34689999999999999999999999999999998753
No 26
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=7.4e-49 Score=437.02 Aligned_cols=298 Identities=25% Similarity=0.360 Sum_probs=250.0
Q ss_pred ccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-C--CchhccccCCCCCCEEEEecCCCHHHHH
Q psy2378 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G--NKKHCLDFNAEEHPIAFQVGDNEPKKLA 79 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~--~~~~~~~~~~~~~p~~vQl~g~~~~~~~ 79 (956)
|++..+ ++++++|||+++||.+||.+|+++| +|++||||++++.+. . ....++..++++.|+++||+|++|++|+
T Consensus 1 ~~~~~~-~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~ 78 (319)
T TIGR00737 1 IGNIQL-KSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMA 78 (319)
T ss_pred CCCccC-CCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHH
Confidence 466677 9999999999999999999999999 699999999999998 3 2345667788999999999999999999
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHH
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 159 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l 159 (956)
++|++++++|||+||||+|||.+++++.++|+.+++||+++.+|+++|++++++||+||+|.||++.. .++.++++.+
T Consensus 79 ~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~--~~~~~~a~~l 156 (319)
T TIGR00737 79 EAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAH--INAVEAARIA 156 (319)
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCc--chHHHHHHHH
Confidence 99999999999999999999987777777777899999999999999999999999999999997644 2467999999
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcccccc
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYK 237 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~ 237 (956)
+++|+|+|+||+|+. .+.+.++++|++++++++.+ ++|||+||||.|++|++++++. ||+||+|||+++
T Consensus 157 ~~~G~d~i~vh~r~~--------~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 157 EDAGAQAVTLHGRTR--------AQGYSGEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHhCCCEEEEEcccc--------cccCCCchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 999999999999974 22344568999999999998 6999999999999999999964 999999999999
Q ss_pred CCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCcc
Q psy2378 238 NPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDM 317 (956)
Q Consensus 238 ~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~ 317 (956)
|||||+++++.+...+. .+.+++.|+++.+.+|.+...+... ........++|+.+|.+++ +...+++..+
T Consensus 228 ~P~l~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~-------~~~~~~r~~~ 298 (319)
T TIGR00737 228 NPWLFRQIEQYLTTGKY-KPPPTFAEKLDAILRHLQLLADYYG-ESKGLRIARKHIAWYLKGF-------PGNAALRQTL 298 (319)
T ss_pred CChHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhcC-------CcHHHHHHHH
Confidence 99999999987654432 2467888999988888765433311 1111234666888888887 5566777777
Q ss_pred ccccC
Q psy2378 318 MTKKN 322 (956)
Q Consensus 318 m~~~n 322 (956)
+..++
T Consensus 299 ~~~~~ 303 (319)
T TIGR00737 299 NHASS 303 (319)
T ss_pred HcCCC
Confidence 66554
No 27
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=100.00 E-value=5.6e-48 Score=449.99 Aligned_cols=335 Identities=22% Similarity=0.315 Sum_probs=294.7
Q ss_pred cccCCCCCcceeeeeeecccccCC--cchHHHHHHHHHHHhhhcccccc-cceeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSFGN--IDEKKYLEALLIDVELSLPIILN-RKIHTIFIGGGTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~~~--~~~~~~v~~vl~eI~~~~~~~~~-~~i~~i~fgggtPs~L~~~~l~~ll~~i~~ 695 (956)
+| .++|+|+..|.||.+.+..+. ....+|++++++||+.....+.. ..+.+||||||||+.++++++.++++.+++
T Consensus 52 lY-iHiPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~ 130 (455)
T TIGR00538 52 LY-VHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRE 130 (455)
T ss_pred EE-EEeCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHH
Confidence 45 789999999999998775432 23567999999999876544322 479999999999999999999999999999
Q ss_pred HcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEee
Q psy2378 696 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIY 774 (956)
Q Consensus 696 ~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~ 774 (956)
.+++....++++|+||+.++++.++.|+++|++||+||+||+++++|+.++|.|+.+++.++++.+++.|+ ++++|||+
T Consensus 131 ~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (455)
T TIGR00538 131 NFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY 210 (455)
T ss_pred hCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe
Confidence 88877778999999999999999999999999999999999999999999999999999999999999976 59999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcc-ccc-CCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcC
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTY-FFK-YPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 852 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~-l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far 852 (956)
|+||||.++|.+|++++.+++|+||++|.|++.|++. ..+ ......|+.++..+++..+.+.|.+.||.+|+++||+|
T Consensus 211 GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~fa~ 290 (455)
T TIGR00538 211 GLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDHFAK 290 (455)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEeccceeC
Confidence 9999999999999999999999999999999988753 322 23445788889999999999999999999999999999
Q ss_pred CCCcc----------cchhcccc--CCceeeccccchhh-------------------------------hchhhHHHHH
Q psy2378 853 TGYES----------QHNLNYWK--FGDYLGNSIAKSKK-------------------------------IEKKCLIFEF 889 (956)
Q Consensus 853 ~g~~s----------~hn~~yw~--~~~ylg~g~~~~~~-------------------------------~~~~~~~~e~ 889 (956)
|+++| +||..||. ..+|+|+|+++.+. ++..+.+.+.
T Consensus 291 ~~~~~~~~~~~~~l~~~~~~y~~~~~~~~lG~G~gA~s~~~~~~~~n~~~~~~Y~~~~~~~~~pv~~~~~ls~~~~~~~~ 370 (455)
T TIGR00538 291 PDDELAVAQRKGELHRNFQGYTTQKDTDLLGFGVTSISMLGDCYAQNQKTLKQYYKAVDEGGNPVERGIALSQDDCIRRE 370 (455)
T ss_pred CChHHHHHHhhCcceeccccccCCCCCcEEEeCcceeeCCCCeeEECCCCHHHHHHHHHCCCCCeeecccCCHHHHHHHH
Confidence 99885 77789999 78999999986422 1234567789
Q ss_pred HHHhhhhccCCChhhHHHHhCCCHHH-HHH---HHHHHHHCCCeEEcCCEEeeCchhhchHHHHHHHhh
Q psy2378 890 MLNALRLKDGFSPNLFFERTGINIKI-IES---KLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954 (956)
Q Consensus 890 ~~~~lr~~~gi~~~~~~~~~g~~~~~-~~~---~l~~l~~~Gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 954 (956)
++++||+..|++++.|.++||.++.. +.. .|+.|++.||+..++++++||++|++|+|+|+..|-
T Consensus 371 ~~~~l~~~~gl~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~gll~~~~~~~~lT~~G~~~~~~i~~~f~ 439 (455)
T TIGR00538 371 VIKSLMCNFKLDYSKIEEKFDLDFADYFAKELELLKPLEEDGLLDVDEKGIEVTPKGRLLIRNIAMVFD 439 (455)
T ss_pred HHHHHHhcCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCEEEECCEEEECcCChHHHHHHHHHHH
Confidence 99999999999999999999998753 333 367889999999999999999999999999999884
No 28
>KOG2335|consensus
Probab=100.00 E-value=5.8e-48 Score=410.63 Aligned_cols=240 Identities=29% Similarity=0.490 Sum_probs=215.3
Q ss_pred EEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-C--CchhccccCCCCCCEEEEecCCCHHHHHHHHHHHHHcCC
Q psy2378 14 SIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G--NKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY 90 (956)
Q Consensus 14 ~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~--~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G~ 90 (956)
++|||+++|+++||+|+|.+| ++++||||+.++.++ . .+...+.+.++++|+|||++|+||+.+.+||+++..++
T Consensus 22 i~APMvd~S~l~fR~L~R~y~-~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYG-ADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHhC-CceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-
Confidence 799999999999999999997 799999999999998 3 34557788899999999999999999999999999995
Q ss_pred CEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEc
Q psy2378 91 DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH 170 (956)
Q Consensus 91 d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh 170 (956)
|+||||||||+.-+.+++||+.|+.+|+++.++|+++++.++.||++|||++.|. +.++++++.++++|++.++||
T Consensus 100 D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~----~kTvd~ak~~e~aG~~~ltVH 175 (358)
T KOG2335|consen 100 DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDL----EKTVDYAKMLEDAGVSLLTVH 175 (358)
T ss_pred CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcH----HHHHHHHHHHHhCCCcEEEEe
Confidence 9999999999988899999999999999999999999999999999999998665 357899999999999999999
Q ss_pred ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHHh
Q psy2378 171 ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 248 (956)
Q Consensus 171 ~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~~ 248 (956)
|||++..|. ..+|+||+.|+.|++.+++||||+||+|.+.+|+.++++. |||||+|||+|.|||+|..
T Consensus 176 GRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~---- 245 (358)
T KOG2335|consen 176 GRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT---- 245 (358)
T ss_pred cccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc----
Confidence 999866553 3567999999999999977999999999999999999996 9999999999999999965
Q ss_pred hccCCCCCCCCCHHHHHHHHHhhhhcc
Q psy2378 249 YYSNLPQYKIPTRIDIINLDSENRENE 275 (956)
Q Consensus 249 ~~~~~~~~~~~~~~e~~~~~~~~~e~e 275 (956)
.+ ..++..++++.+++.....
T Consensus 246 ---~~---~~~~~~~~~~~~l~~~~e~ 266 (358)
T KOG2335|consen 246 ---AG---YGPTPWGCVEEYLDIAREF 266 (358)
T ss_pred ---CC---CCCCHHHHHHHHHHHHHHc
Confidence 11 1345667777777665533
No 29
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=4.8e-49 Score=398.57 Aligned_cols=168 Identities=47% Similarity=0.772 Sum_probs=160.8
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|+++++++.+++.++||.+|++|++|++++++.+++|+||+|+..|.+.++|+||||||++.|++|||||.||
T Consensus 36 e~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~n~~~~~taFtvsVda~~g~~TGISA~DR 115 (218)
T PRK00910 36 EDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVNNNSANQTAFTVSIEAKHGVTTGVSAQDR 115 (218)
T ss_pred CCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccCCCCCCCCCeEEEEecCCCCCCCcCHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||+|+++.++|+||++|||||||+|++|||++|+||||||||||+|||++|++||||||++||+|++ +++
T Consensus 116 a~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~ 195 (218)
T PRK00910 116 VTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKL 195 (218)
T ss_pred HHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCCCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 578
Q ss_pred CceEEEEcCCcccHH
Q psy2378 423 KNILHISVPGALEIP 437 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p 437 (956)
|++.++++..-++..
T Consensus 196 h~l~~isi~dli~yr 210 (218)
T PRK00910 196 HNMPVLTIEDMVMYR 210 (218)
T ss_pred cCCcEEEHHHHHHHH
Confidence 999999988765544
No 30
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=5e-49 Score=397.39 Aligned_cols=166 Identities=49% Similarity=0.834 Sum_probs=159.2
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|+++++++.+++.++||.+|++|++|++++++.+++|+||+|+..|.+.++|+||||||++.|++|||||.||
T Consensus 35 e~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~n~~~~~taFtvsVda~~g~~TGISA~DR 114 (214)
T PRK01792 35 EDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQHNTSVNKTAFTVTIEAAKGVSTGVSAADR 114 (214)
T ss_pred CCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCcccccCCCCCCCCEEEEEecCCCCCCCcCHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||+|+++.++|+||++|||||||+|++|||++|+||||||||||+|||++|++||||||++||+|++ +++
T Consensus 115 a~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~ 194 (214)
T PRK01792 115 VTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKK 194 (214)
T ss_pred HHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 467
Q ss_pred CceEEEEcCCccc
Q psy2378 423 KNILHISVPGALE 435 (956)
Q Consensus 423 ~~i~~~~vpg~~e 435 (956)
+++.++++..-++
T Consensus 195 ~~l~~isi~dli~ 207 (214)
T PRK01792 195 FGYAVVTIEDLVE 207 (214)
T ss_pred cCCcEEEHHHHHH
Confidence 8999998876544
No 31
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-48 Score=395.26 Aligned_cols=166 Identities=43% Similarity=0.731 Sum_probs=159.7
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|+++++++.+++.++||.+|++|++|++++++.+++|+|++|+..|++.++|+||||||++.|++|||||.||
T Consensus 40 e~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~n~~~~~t~ftvSVDa~~gttTGISA~DR 119 (230)
T PRK00014 40 FDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDSNRSRYSTAFTVSIEAREGVTTGVSAVDR 119 (230)
T ss_pred CCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCcccccCCCCCCCCeEEEEEcCCCCCCCcCHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||+|++++++|+||++|||||||+|++|||++|+||||||||||+|||++|++||||||++||+|++ +++
T Consensus 120 a~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicEil~~dG~ma~~~~l~~fA~~ 199 (230)
T PRK00014 120 VTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAK 199 (230)
T ss_pred HHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 467
Q ss_pred CceEEEEcCCccc
Q psy2378 423 KNILHISVPGALE 435 (956)
Q Consensus 423 ~~i~~~~vpg~~e 435 (956)
+++.++++..-++
T Consensus 200 ~~l~iisi~dli~ 212 (230)
T PRK00014 200 EGLVALAIDELAA 212 (230)
T ss_pred cCCcEEEHHHHHH
Confidence 9999999877554
No 32
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=8.6e-48 Score=386.79 Aligned_cols=164 Identities=53% Similarity=0.890 Sum_probs=148.1
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||++++++++..+++.++||.+|++|++|++++++.+++|+|++|+..|.+.++++||||||++.|++|||||+||
T Consensus 20 ~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~~~~~~~~~ftvsVD~~~g~~TGISa~DR 99 (194)
T PF00926_consen 20 EDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPDNTDPHGTAFTVSVDAAKGTTTGISAADR 99 (194)
T ss_dssp STTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSSCCTTTS--BBCEEEESSS-SSSSSHHHH
T ss_pred CCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCcCCCCCCCCeeEeeecCCCCCCCcCHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||+|++++++|+||++|||||||+|++|||++|+||||||||||+|||++|++||||||++||+|++ +++
T Consensus 100 a~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~eil~~dG~~~~~~~~~~fA~~ 179 (194)
T PF00926_consen 100 ARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICEILDDDGDMARRDELEEFAKK 179 (194)
T ss_dssp HHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEEBBETTSSBHCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 467
Q ss_pred CceEEEEcCCc
Q psy2378 423 KNILHISVPGA 433 (956)
Q Consensus 423 ~~i~~~~vpg~ 433 (956)
+++.+++|..-
T Consensus 180 ~~l~~vsi~dl 190 (194)
T PF00926_consen 180 HGLPIVSIEDL 190 (194)
T ss_dssp TT-EEEEHHHH
T ss_pred cCCcEEEHHHH
Confidence 99999987543
No 33
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=1.7e-47 Score=384.84 Aligned_cols=164 Identities=52% Similarity=0.833 Sum_probs=156.7
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCC-CcccCChhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANG-VTTGISASD 348 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~-~~tgis~~d 348 (956)
+.||||+|+++++++.+++.++||.+|++|++|++++++.+++|+||+|+..|+++++|+||||||+..+ ++|||||.|
T Consensus 24 ~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~n~~~~~t~~t~sV~~~~~~~~TGISa~D 103 (199)
T TIGR00506 24 EDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDINTSASGTASTFTITVAHRKTFTGISAND 103 (199)
T ss_pred CCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccccCCcCCCceEEEEEeCCCCCCCCcCHHH
Confidence 4599999999999999999999999999999999999999999999999999999999999999998766 999999999
Q ss_pred hhHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------cc
Q psy2378 349 RAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQ 421 (956)
Q Consensus 349 ra~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~ 421 (956)
||+|||+++++.++|+||++|||||||+|++|||++|+||||||||||+|||++|++||||||++||+|++ ++
T Consensus 104 Ra~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~dG~m~~~~~~~~fA~ 183 (199)
T TIGR00506 104 RALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAK 183 (199)
T ss_pred HHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 56
Q ss_pred cCceEEEEcCCc
Q psy2378 422 EKNILHISVPGA 433 (956)
Q Consensus 422 e~~i~~~~vpg~ 433 (956)
+|++.++++..-
T Consensus 184 ~~~l~~isi~dl 195 (199)
T TIGR00506 184 KHNLKLISIEDL 195 (199)
T ss_pred HcCCcEEEHHHH
Confidence 789999987653
No 34
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=5.5e-47 Score=409.32 Aligned_cols=175 Identities=54% Similarity=0.834 Sum_probs=166.1
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|+++++++.|++.++||.+|++|++|++++++.|++|+||+|+..|++.++|+||||||++ +++|||||+||
T Consensus 25 ~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~n~~~~~taFtvsVda~-~~~TGISA~DR 103 (339)
T PRK09314 25 EDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSKNTSNHETAFTVSIDAK-EATTGISAFER 103 (339)
T ss_pred CCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCcccccCCCCCCCCeEEEEecC-CCCCCCCHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999997 57999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||+|++++++|+||++|||||||+|++|||++|+||||||||||+|||++|++||||||++||+|++ +++
T Consensus 104 a~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~ 183 (339)
T PRK09314 104 DMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLEDFAKK 183 (339)
T ss_pred HHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCceEEEEEEecCCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 467
Q ss_pred CceEEEEcCCcccHHHHHHHHHh
Q psy2378 423 KNILHISVPGALEIPLALKNIIQ 445 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~~~~~~~ 445 (956)
|+++++++...++.....+.+++
T Consensus 184 h~l~~isi~dli~yr~~~e~~v~ 206 (339)
T PRK09314 184 HNLKMIYVSDLVEYRLKNESLIK 206 (339)
T ss_pred cCCcEEEHHHHHHHHHhcccceE
Confidence 99999999998887777666643
No 35
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=9.8e-46 Score=407.04 Aligned_cols=230 Identities=44% Similarity=0.734 Sum_probs=193.8
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|+++++++.|++.++||.+|++|++|++++++.|++|+||+|+..|++.++|+||||||++.|++|||||+||
T Consensus 25 ~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~~~~~~~~~ftvsvda~~g~~TGISa~DR 104 (369)
T PRK12485 25 EDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPSNGSVFSTAFTVSIEAATGVTTGISAADR 104 (369)
T ss_pred CCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCcccccCCCCCCCCEEEEEecCCCCCCCcCHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||++|+|+++|+||++|||||||+|++|||++|+||||||||||+|||+.|++||||||++||+|++ +++
T Consensus 105 a~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~avi~ei~~~dg~m~~~~~~~~fA~~ 184 (369)
T PRK12485 105 ARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAK 184 (369)
T ss_pred HHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 467
Q ss_pred CceEEEEcCCcccHHHHHHHHHhc----------c---------CCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhh
Q psy2378 423 KNILHISVPGALEIPLALKNIIQI----------K---------KFNVLIAIGVIIRGETYHFELIANETISNIMQISIK 483 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~~~~~~~~----------~---------~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~ 483 (956)
|+++++++...++.....+.+++. + .+|+.--+ ++++|+. .-.
T Consensus 185 h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHv-ALv~G~~-----------------~~~ 246 (369)
T PRK12485 185 HGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHM-AMVMGDI-----------------RRE 246 (369)
T ss_pred cCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEE-EEEeCCC-----------------CCC
Confidence 899999988776665555555432 1 12222112 2344433 112
Q ss_pred cCccE----------EEEecCC-C---CHHHHHhhhcccCceeEEEec
Q psy2378 484 NNIPI----------INAILTT-E---TIEQANSRILTKGEIIIFINH 517 (956)
Q Consensus 484 ~~~pv----------~~gvlt~-~---~~~qa~~r~~~~~~~~~~~~~ 517 (956)
..+|| +||-+.| + +.+.|+++...+|..|+++=.
T Consensus 247 ~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr 294 (369)
T PRK12485 247 QPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLA 294 (369)
T ss_pred CCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEec
Confidence 34455 6777754 4 389999998888866666544
No 36
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.3e-42 Score=402.52 Aligned_cols=261 Identities=26% Similarity=0.340 Sum_probs=236.9
Q ss_pred cccCCCCCcceeeeeeeccccc--C-CcchHHHHHHHHHHHhhhccccc--ccceeEEEecCCCCCCCCHHHHHHHHHHH
Q psy2378 619 KSHYKIPYKVIINEAIELVKSF--G-NIDEKKYLEALLIDVELSLPIIL--NRKIHTIFIGGGTPSLISDTGLDYLLKNI 693 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~--~-~~~~~~~v~~vl~eI~~~~~~~~--~~~i~~i~fgggtPs~L~~~~l~~ll~~i 693 (956)
+| .++|+|+.+|.||.+++.. + .....+|++++++||+....... ...+.++|||||||+.++.+++.++++.+
T Consensus 166 LY-ihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i 244 (488)
T PRK08207 166 IY-IGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEELERLLEEI 244 (488)
T ss_pred EE-EecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHHHHHHHHHH
Confidence 35 7899999999999987642 1 22356799999999987654332 24689999999999999999999999999
Q ss_pred HHHc-ccCCCceeEEEe-CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEE
Q psy2378 694 KKLL-LFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNL 770 (956)
Q Consensus 694 ~~~~-~~~~~~eitle~-np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~ 770 (956)
.+.+ .+.+..++|+|+ +|+.+|++.++.|+++|++|||||+||+++++|+.+||.|+.+++.++++.+++.|+ ++++
T Consensus 245 ~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~ 324 (488)
T PRK08207 245 YENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINM 324 (488)
T ss_pred HHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 9887 555667999998 999999999999999999999999999999999999999999999999999999976 8999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC-CCCCCCCHHHHHHHHHHHHHHHHhcCchhH----
Q psy2378 771 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY-PPLSMPSNDENAVMQDKITSLLKNNYYKNY---- 845 (956)
Q Consensus 771 dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~y---- 845 (956)
|||+|+||||.++|.+|++++.+++|+|+++|.|++.|||++++. .+...|+.++..+|+..+.+.|.+.||.+|
T Consensus 325 DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Yylyr 404 (488)
T PRK08207 325 DLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVPYYLYR 404 (488)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhhhhhh
Confidence 999999999999999999999999999999999999999999876 456678899999999999999999999999
Q ss_pred --------HHHhhcCCCCcccchhcccc-CCceeeccccchhhh
Q psy2378 846 --------EISAYSKTGYESQHNLNYWK-FGDYLGNSIAKSKKI 880 (956)
Q Consensus 846 --------eis~far~g~~s~hn~~yw~-~~~ylg~g~~~~~~~ 880 (956)
|+++|++||++|+||..||+ ..+|+|+|++|++++
T Consensus 405 qk~~~~n~E~~~ya~~g~~~~~N~~~w~~~~~~iglG~gA~s~~ 448 (488)
T PRK08207 405 QKNMLGNLENVGYAKPGKESIYNIQIMEEKQTIIGLGAGAVSKF 448 (488)
T ss_pred ccccccccceecccCCCcchhhHHHHHccCCeEEEEcCCcccCC
Confidence 99999999999999999996 779999999998765
No 37
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=4.5e-43 Score=374.38 Aligned_cols=223 Identities=36% Similarity=0.617 Sum_probs=204.3
Q ss_pred ceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CCch--hccccCCCCCCEEEEecCCCHHHHHHHHHHHHHc
Q psy2378 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKK--HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKW 88 (956)
Q Consensus 12 ~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~~~--~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~ 88 (956)
++++|||+++||.+||++++++| +|++||||++++.++ .++. ..+..++.+.|+++||.|++|++|+++|++++++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999999 899999999999998 3332 5666788999999999999999999999999999
Q ss_pred CCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEE
Q psy2378 89 GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI 168 (956)
Q Consensus 89 G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~ 168 (956)
|||+||||+|||.+|+++++||++++++++++.++++++++.+++|++||+|.||+.. +++.++++.++++|+++|+
T Consensus 80 G~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~~~~~l~~~Gvd~i~ 156 (231)
T cd02801 80 GADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLELAKALEDAGASALT 156 (231)
T ss_pred CCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999764 3578999999999999999
Q ss_pred EcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHH
Q psy2378 169 VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 169 vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~ 246 (956)
+|+|+.. +.+.++.+|++++++++.+ ++||++||||.|++++.++++. ||+||+||+++.|||+|++++
T Consensus 157 v~~~~~~--------~~~~~~~~~~~~~~i~~~~-~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~ 227 (231)
T cd02801 157 VHGRTRE--------QRYSGPADWDYIAEIKEAV-SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIK 227 (231)
T ss_pred ECCCCHH--------HcCCCCCCHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhh
Confidence 9999741 1234467999999999976 8999999999999999999986 999999999999999999987
Q ss_pred H
Q psy2378 247 L 247 (956)
Q Consensus 247 ~ 247 (956)
+
T Consensus 228 ~ 228 (231)
T cd02801 228 E 228 (231)
T ss_pred h
Confidence 5
No 38
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.1e-43 Score=364.53 Aligned_cols=170 Identities=50% Similarity=0.822 Sum_probs=161.6
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||++++++++..+++.++||.+|++|++|++++++++++|+|++|+..|.+.++++||||||++.|++|||||.||
T Consensus 35 ~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~~~~~~~~~ftvsVd~~~g~~TGISa~DR 114 (217)
T PRK03353 35 EDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVENNTSQYGTAFTVTIEAAEGVTTGVSAADR 114 (217)
T ss_pred CCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccccCCCCCCceEEEEECCCCCCCCcCHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||.++++.++|+||++|||||||++++|||++|+||||||||||+|||+.|++||||+|++||+|++ +++
T Consensus 115 a~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~avi~ei~~~~G~~~~~~~~~~fA~~ 194 (217)
T PRK03353 115 ITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQ 194 (217)
T ss_pred HHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceEEEEEeecCCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 467
Q ss_pred CceEEEEcCCcccHHHH
Q psy2378 423 KNILHISVPGALEIPLA 439 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~ 439 (956)
|++.++++....+....
T Consensus 195 ~~l~~v~i~dli~~r~~ 211 (217)
T PRK03353 195 HNMPVLTIEDLVAYRQA 211 (217)
T ss_pred cCCcEEEHHHHHHHHHH
Confidence 99999998876655443
No 39
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=397.50 Aligned_cols=249 Identities=42% Similarity=0.631 Sum_probs=199.3
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEecc--CCCcccCChh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAA--NGVTTGISAS 347 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~--~~~~tgis~~ 347 (956)
+.||||+++++++++.+++.++||.+|++|++|++|+.+++++|++++|+..|++.++|+||||||++ .|++|||||+
T Consensus 27 e~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~n~~~~~taFtVsVDa~~~~g~tTGISA~ 106 (555)
T PRK09319 27 ENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDRNTDSNQTAFTVSIDAGPELGVSTGISAE 106 (555)
T ss_pred CCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCcccccCCCCCCceEEEEEeccccCCCCCCcCHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999987 5999999999
Q ss_pred hhhHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------c
Q psy2378 348 DRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------A 420 (956)
Q Consensus 348 dra~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~ 420 (956)
|||+|||++++|+++|+||++|||||||+|++|||++|+||||||||||+|||+.|++||||++++||+|++ +
T Consensus 107 DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~PaaVicEi~~~dG~mar~~~l~~fA 186 (555)
T PRK09319 107 DRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPELKEYA 186 (555)
T ss_pred HHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred ccCceEEEEcCCcccHHHHHHHHHhc----------cCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhh--hcCccE
Q psy2378 421 QEKNILHISVPGALEIPLALKNIIQI----------KKFNVLIAIGVIIRGETYHFELIANETISNIMQISI--KNNIPI 488 (956)
Q Consensus 421 ~e~~i~~~~vpg~~e~p~~~~~~~~~----------~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~--~~~~pv 488 (956)
+++++.++++....+..+..+.++++ +.|..+. .-..+ +.+.|.-+|-. ++.. +..++|
T Consensus 187 ~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~-yr~~~-~g~eHvALvkG-------d~~~~~~~pvLV 257 (555)
T PRK09319 187 KQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYG-YRNEL-DGSEHVALVKG-------DPANFKDEPVLV 257 (555)
T ss_pred HHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEE-EEeCC-CCeEEEEEEcC-------CcccccCCCceE
Confidence 67899999998877766655555432 2222111 11000 11233322211 1211 124456
Q ss_pred ----------EEEecCC---CCHHHHHhhhcccCceeEEEeccccchHHHHh
Q psy2378 489 ----------INAILTT---ETIEQANSRILTKGEIIIFINHKNKSLVNLIK 527 (956)
Q Consensus 489 ----------~~gvlt~---~~~~qa~~r~~~~~~~~~~~~~~~~~~~~~~~ 527 (956)
+||-+.| ++.+.|++++..+|..|+++=..+-.-.++..
T Consensus 258 RVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLrqEGRGiGL~n 309 (555)
T PRK09319 258 RMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLRQEGRGIGLIN 309 (555)
T ss_pred EEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeCCCCcchhHHH
Confidence 7788877 56888999988888666666544333333433
No 40
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=2.4e-43 Score=358.77 Aligned_cols=159 Identities=31% Similarity=0.436 Sum_probs=144.3
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCcccccc-----------CCCCCC--CcceEEEec
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKK-----------NNSSFG--TNFTVSIEA 336 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~-----------n~~~~~--~~~~~~~~~ 336 (956)
+.||||+|++++++++|++.++||.+|.+|++|++++++.+++|+||+|+.. |+++|+ ++||||||+
T Consensus 22 e~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~~~~~~~~~~~~taFtvsVd~ 101 (219)
T PRK05773 22 DGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYRKLVKKPSYGDEPAFSLWVNH 101 (219)
T ss_pred CCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccccccccCCCCCCceEEEEEcC
Confidence 5699999999999999999999999999999999999999999999999876 456787 689999997
Q ss_pred cCCCcccCChhhhhHHHHHhhcC--------CC----CCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcc
Q psy2378 337 ANGVTTGISASDRAHTIKVASSK--------KA----KPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPS 404 (956)
Q Consensus 337 ~~~~~tgis~~dra~t~~~~~~~--------~~----~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~ 404 (956)
.|++|||||.|||+|||+|+++ ++ +|+||++|||||||+++ ||++|+||||||||||+|||+.|+
T Consensus 102 -~~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~R~GHTEasvdLa~lAGl~P~ 178 (219)
T PRK05773 102 -VKTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAAGLEPS 178 (219)
T ss_pred -CCCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--ccccCCChhHHHHHHHHHcCCCcc
Confidence 5999999999999999999983 22 38999999999999998 899999999999999999999999
Q ss_pred hhhhhcccccccccc-------cccCceEEEEcCC
Q psy2378 405 AVICEILNDDGTMAR-------AQEKNILHISVPG 432 (956)
Q Consensus 405 ~vi~e~~~~~g~~~~-------~~e~~i~~~~vpg 432 (956)
+|||||||+++ |++ +++|++.++++..
T Consensus 179 ~vicEil~~~~-~~~~~~~~~fA~~~~l~~isi~d 212 (219)
T PRK05773 179 AVIAEMLDEKL-SLSKEKAKKIAKNLGFPLVEGKE 212 (219)
T ss_pred EEEEEEeCCCC-CcCHHHHHHHHHHcCCcEEEHHH
Confidence 99999999755 554 4778999988654
No 41
>KOG2333|consensus
Probab=100.00 E-value=5.1e-42 Score=369.85 Aligned_cols=298 Identities=21% Similarity=0.291 Sum_probs=239.0
Q ss_pred cccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CCch--hccccCCCCCCEEEEecCCCHHHHHH
Q psy2378 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKK--HCLDFNAEEHPIAFQVGDNEPKKLAK 80 (956)
Q Consensus 4 ~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~~~--~~~~~~~~~~p~~vQl~g~~~~~~~~ 80 (956)
...+| ..+.+|||+.+++++|||++|+.+| +|+++.||..+..|+ |... -+++.|..+.-++|||.|+.|+.+++
T Consensus 259 k~lD~-r~K~~LaPLTTvGNLPFRRlCk~lG-ADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~k 336 (614)
T KOG2333|consen 259 KLLDF-RDKKYLAPLTTVGNLPFRRLCKKLG-ADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAK 336 (614)
T ss_pred ccccc-ccceeeccccccCCccHHHHHHHhC-CccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHH
Confidence 34577 8899999999999999999999999 599999999999999 6433 37778988889999999999999999
Q ss_pred HHHHHH-HcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 81 SAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 81 aA~~~~-~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
+|+.+. ...+|.||||||||..-+.+.|.|++|+++|..+.++|+++...++ +|++||||.|..++.+. +.+++..
T Consensus 337 aaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~--a~~Li~~ 414 (614)
T KOG2333|consen 337 AAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPV--AHELIPR 414 (614)
T ss_pred HHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchh--HHHHHHH
Confidence 998775 4679999999999999999999999999999999999999999885 59999999998877654 5677777
Q ss_pred HH-HcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCC-ceEEEecCCCCHHHHHHHhhh---cCEEEEcc
Q psy2378 159 VS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY---IDGVMLGR 233 (956)
Q Consensus 159 l~-~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~-ipVi~nGgI~s~~da~~~l~~---ad~VmiGR 233 (956)
+. +.|++++|+|||. ++++|.+.+||++|.++.+.+.. +|+||||||.|++|.-+.+.. +|+|||||
T Consensus 415 i~newg~savTlHGRS--------RqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaR 486 (614)
T KOG2333|consen 415 IVNEWGASAVTLHGRS--------RQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIAR 486 (614)
T ss_pred HhhccCcceEEecCch--------hhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeec
Confidence 87 9999999999998 48899999999999999988755 999999999999997666654 99999999
Q ss_pred ccccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHH-HHHHHHHhhcccccccCCHHHHHH
Q psy2378 234 EAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPN-AINFMSKYARGLICMTLTEKHCIQ 312 (956)
Q Consensus 234 ~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~-~v~fm~~y~~Glic~~l~~~~~~~ 312 (956)
|+|-.||||.+|++.-+.+. ....+.++++.|.++--.+|-.-...-..|.+ .+-||+.+++ ++.+.+.+....+
T Consensus 487 GALIKPWIFtEIkeqq~wD~---sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~R-YiPv~l~e~lpqr 562 (614)
T KOG2333|consen 487 GALIKPWIFTEIKEQQHWDI---SSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHR-YIPVGLLEVLPQR 562 (614)
T ss_pred cccccchHhhhhhhhhcCCc---cchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHh-hchHHHhhcCchh
Confidence 99999999999998776653 24456666666666643333321111111122 2224444333 3446666555444
Q ss_pred ccCcc
Q psy2378 313 LKLDM 317 (956)
Q Consensus 313 L~l~~ 317 (956)
+.-.|
T Consensus 563 iN~RP 567 (614)
T KOG2333|consen 563 INDRP 567 (614)
T ss_pred hccCC
Confidence 44443
No 42
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=5.9e-43 Score=391.89 Aligned_cols=239 Identities=40% Similarity=0.667 Sum_probs=197.1
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||++++++++..+++.++||.+|++|++|++++++.+++|++++|+..|+++++|+||||||++.|++|||||.||
T Consensus 26 ~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~~~~~~~t~ftvsvd~~~g~~TGISa~dR 105 (402)
T PRK09311 26 EDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAHNQDSHGTAFTVSVDAANGVTTGISAADR 105 (402)
T ss_pred CCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCcccccCCCCCCCceEEEEEccCCcccccchhHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||++|+++++|+||++|||||||+|++|||+.|+||||||||||+|||+.|++||||++++||+|++ +++
T Consensus 106 a~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Paavi~ei~~~~G~~~~~~~~~~fA~~ 185 (402)
T PRK09311 106 ATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADE 185 (402)
T ss_pred HHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 567
Q ss_pred CceEEEEcCCcccHHHHHHHHHhc----------cCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccE----
Q psy2378 423 KNILHISVPGALEIPLALKNIIQI----------KKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPI---- 488 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~~~~~~~~----------~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv---- 488 (956)
+++.++++....+.....+.++++ +.|..++ .-.- -+.+.|+-+|-. ++.-...++|
T Consensus 186 ~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~-y~~~-~~~~eH~ALv~G-------d~~~~~~vlVRVHs 256 (402)
T PRK09311 186 HDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIG-YTSI-LDGKEHVALVKG-------DIGDGEDVLVRVHS 256 (402)
T ss_pred cCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEE-EEEC-CCCeEEEEEEeC-------CCCCCCceeEEEec
Confidence 899999999888777666655442 2222221 1000 012334333221 1222223344
Q ss_pred ------EEEecCC---CCHHHHHhhhcccCceeEEEec
Q psy2378 489 ------INAILTT---ETIEQANSRILTKGEIIIFINH 517 (956)
Q Consensus 489 ------~~gvlt~---~~~~qa~~r~~~~~~~~~~~~~ 517 (956)
+||-+.| ++.++|++++..+|..|+++=+
T Consensus 257 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 5676766 7799999998777766666654
No 43
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=2.5e-42 Score=388.53 Aligned_cols=239 Identities=36% Similarity=0.619 Sum_probs=194.6
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccc--cCCCCCCCcceEEEeccCCCcccCChh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK--KNNSSFGTNFTVSIEAANGVTTGISAS 347 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~--~n~~~~~~~~~~~~~~~~~~~tgis~~ 347 (956)
+.||||++++++++..+++.++||.+|++|++|+++++++|++|+|++|+. .|.+.++|+||||||++.|++|||||.
T Consensus 57 ~~rEnegdLv~aAe~~t~e~v~fm~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~ 136 (450)
T PLN02831 57 EDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSAS 136 (450)
T ss_pred CCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchH
Confidence 459999999999999999999999999999999999999999999999987 578889999999999998999999999
Q ss_pred hhhHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccc-cccccc-------
Q psy2378 348 DRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMAR------- 419 (956)
Q Consensus 348 dra~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~-~g~~~~------- 419 (956)
|||+|||+|++|.++|+||++|||||||+|++|||++|+||||||||||+|||+.|++||||++++ ||+|++
T Consensus 137 dRa~Tir~lad~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~f 216 (450)
T PLN02831 137 DRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKF 216 (450)
T ss_pred HHHHHHHHHhCcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 899986
Q ss_pred cccCceEEEEcCCcccHHHHHHHHHhc----------cCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccE-
Q psy2378 420 AQEKNILHISVPGALEIPLALKNIIQI----------KKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPI- 488 (956)
Q Consensus 420 ~~e~~i~~~~vpg~~e~p~~~~~~~~~----------~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv- 488 (956)
+++|++.++++....+.....+.++++ +.|..++ .-..+ +.+.|+-+|... +.-...++|
T Consensus 217 A~~h~L~~v~i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~-yr~~~-~g~eHlALv~Gd-------~~~~~~vLVR 287 (450)
T PLN02831 217 AEEHGLKIISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYC-YRSKL-DGIEHIAFVKGD-------IGDGQDVLVR 287 (450)
T ss_pred HHHcCCcEEEHHHHHHHHhhccccccccceeeeecCCCCEEEEE-EEeCC-CCeEEEEEEeCC-------cCCCCCceEE
Confidence 467899999998877766555555432 2222221 11111 123444333221 121223455
Q ss_pred ---------EEEecCC---CCHHHHHhhhcccCceeEEEec
Q psy2378 489 ---------INAILTT---ETIEQANSRILTKGEIIIFINH 517 (956)
Q Consensus 489 ---------~~gvlt~---~~~~qa~~r~~~~~~~~~~~~~ 517 (956)
+||-+.| ++.++|++++...|..|+++=.
T Consensus 288 VHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr 328 (450)
T PLN02831 288 VHSECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLR 328 (450)
T ss_pred EeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEc
Confidence 6677766 6799999998877766655544
No 44
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=375.61 Aligned_cols=241 Identities=49% Similarity=0.779 Sum_probs=193.2
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||++++++++..+++.++||.+|++|++|++++.+.+++|++++|+..|.++++++||||||++.|++|||||.||
T Consensus 25 ~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~~~~~~~~~ftvsvd~~~g~~TGISa~DR 104 (367)
T PRK14019 25 EDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYRNGTQYGTNFTVSIEAAEGVTTGISAADR 104 (367)
T ss_pred CCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCcccccCCCcCCCceEEEEEcCCCccceeecHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||.+++++++|+||++|||||||+|++|||++|+||||||||||+|||+.|++||||+++++|+|++ +++
T Consensus 105 a~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~ei~~~~g~~~~~~~~~~fA~~ 184 (367)
T PRK14019 105 ARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFAKE 184 (367)
T ss_pred HHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886 467
Q ss_pred CceEEEEcCCcccHHHHHHHHHhcc-------CCceEEEEeEEEeCC---cchhHHHHHHHHHHHHHHhhhcCccE----
Q psy2378 423 KNILHISVPGALEIPLALKNIIQIK-------KFNVLIAIGVIIRGE---TYHFELIANETISNIMQISIKNNIPI---- 488 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~~~~~~~~~-------~~d~~i~lg~vi~g~---t~h~~~v~~~~~~~~~~~~~~~~~pv---- 488 (956)
|++.++++....+.....+.+++.- .|.-+-. .+.|.. +.|+-++.. +++-...++|
T Consensus 185 h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~--~~y~~~~~~~eH~Alv~G-------d~~~~~~vlVRvHS 255 (367)
T PRK14019 185 HGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRL--VAYRDKPSGSTHLALVKG-------TICPDEETLVRVHE 255 (367)
T ss_pred cCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEE--EEEEeCCCCcEEEEEEeC-------CcCCCCceeEEEee
Confidence 8999999876665544444433210 1111000 112322 333333221 2222223455
Q ss_pred ------EEEecCC---CCHHHHHhhhcccCceeEEEeccc
Q psy2378 489 ------INAILTT---ETIEQANSRILTKGEIIIFINHKN 519 (956)
Q Consensus 489 ------~~gvlt~---~~~~qa~~r~~~~~~~~~~~~~~~ 519 (956)
+||-+.| ++.++|+++...+|..|+++=..+
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qe 295 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCG 295 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccC
Confidence 6676766 448889999877886665554433
No 45
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=374.17 Aligned_cols=228 Identities=25% Similarity=0.388 Sum_probs=182.0
Q ss_pred hhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhh
Q psy2378 270 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDR 349 (956)
Q Consensus 270 ~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dr 349 (956)
+.||||+|+++++++.|++.++||.+|++|++|++++++.+++|++++|+.. ..+|+||||||++ ++|||||+||
T Consensus 19 ~~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~~---~~~~aftvsvd~~--~~TGISa~DR 93 (387)
T PRK09318 19 RNRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSN---GGETNFFIPVDYG--TGTGISASER 93 (387)
T ss_pred CCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccCC---CCCCCEEEEEcCC--CCCCcCHHHH
Confidence 3599999999999999999999999999999999999999999999999832 2458999999985 4599999999
Q ss_pred hHHHHHhhcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccc-------ccc
Q psy2378 350 AHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQE 422 (956)
Q Consensus 350 a~t~~~~~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~-------~~e 422 (956)
|+|||+||+ .++|+||++|||||||++. ||++|+||||||||||+|||+.|++||||||++||+|++ +++
T Consensus 94 a~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vicei~~~dG~m~~~~~~~~fA~~ 170 (387)
T PRK09318 94 ALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLKLAEK 170 (387)
T ss_pred HHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEEEEecCCCccccHHHHHHHHHH
Confidence 999999999 7789999999999999885 799999999999999999999999999999999999886 567
Q ss_pred CceEEEEcCCcccHHHHHHHHHhc----------cCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccE----
Q psy2378 423 KNILHISVPGALEIPLALKNIIQI----------KKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPI---- 488 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~~~~~~~~----------~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv---- 488 (956)
|++.++++...++.-..-+.+++. +.|+.+. .-.-+. .+.|+-+|.. ++ ...++|
T Consensus 171 h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~-y~~~~~-g~eH~ALv~g-------~~--~~~vLVRVHS 239 (387)
T PRK09318 171 FSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVS-FENHLD-GKEHVAIVKE-------PL--GEVPLVRIHS 239 (387)
T ss_pred CCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEE-EEeCCC-CcEEEEEEeC-------CC--CCCceEEEee
Confidence 999999988877666655555432 2233222 111111 1344433321 11 124556
Q ss_pred ------EEEecCC---CCHHHHHhhhcccCceeEEEec
Q psy2378 489 ------INAILTT---ETIEQANSRILTKGEIIIFINH 517 (956)
Q Consensus 489 ------~~gvlt~---~~~~qa~~r~~~~~~~~~~~~~ 517 (956)
+||-+.| ++.++|++++..+| .|+++-.
T Consensus 240 ec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr 276 (387)
T PRK09318 240 ECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR 276 (387)
T ss_pred cccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC
Confidence 7788877 67999999987777 5555543
No 46
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=1.2e-37 Score=329.04 Aligned_cols=211 Identities=18% Similarity=0.257 Sum_probs=175.2
Q ss_pred ceEEccCcCcCCHHHHH-HHHHcCC-----CcEEEeccccccccc-CCchh-------------ccccCCCCCCEEEEec
Q psy2378 12 KISIAPMMNLTDRHCRM-FHRQITR-----YSWLYTEMFTTQAIL-GNKKH-------------CLDFNAEEHPIAFQVG 71 (956)
Q Consensus 12 ~i~lAPM~~~td~~fR~-~~~~~g~-----~~l~~tem~~~~~l~-~~~~~-------------~~~~~~~~~p~~vQl~ 71 (956)
|++||||+|+||.+||. ++..+|. +++.+|+|..++.+. ..+.+ +-.....+.|+++||+
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~ 80 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR 80 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence 58999999999999999 6666552 233445555554444 11111 1122334679999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHH
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 151 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 151 (956)
|++|+.++++|+.+++. +|+||||||||++++++.|+|++|+++|+++.+|++++++ +++||+||+|.||+ .+
T Consensus 81 g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~---- 153 (233)
T cd02911 81 SSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VD---- 153 (233)
T ss_pred CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cC----
Confidence 99999999999999885 6999999999999999999999999999999999999998 59999999999997 22
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++++.++++|+|+||++.+. .| ++++|+.+++++ + ++|||+||||+|++|+.++++. ||+||
T Consensus 154 ~~~la~~l~~aG~d~ihv~~~~---~g---------~~ad~~~I~~i~--~-~ipVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 154 DEELARLIEKAGADIIHVDAMD---PG---------NHADLKKIRDIS--T-ELFIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred HHHHHHHHHHhCCCEEEECcCC---CC---------CCCcHHHHHHhc--C-CCEEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 5789999999999998876543 11 247999999987 4 7999999999999999999988 99999
Q ss_pred EccccccCCcchHHHH
Q psy2378 231 LGREAYKNPFLMSNFD 246 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~ 246 (956)
+||+ .|||+|++++
T Consensus 219 iGR~--~~p~~~~~~~ 232 (233)
T cd02911 219 VARA--SLPENIEWLV 232 (233)
T ss_pred EcCC--CCchHHHHhh
Confidence 9999 9999999875
No 47
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=1.1e-32 Score=308.73 Aligned_cols=244 Identities=18% Similarity=0.174 Sum_probs=197.4
Q ss_pred CccccccCCCceEEccCc-------CcCCHHHHHHH-HHcCCCcEEEeccccccccc----C----C--------chhcc
Q psy2378 2 NMINSKYNKRKISIAPMM-------NLTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----G----N--------KKHCL 57 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~-------~~td~~fR~~~-~~~g~~~l~~tem~~~~~l~----~----~--------~~~~~ 57 (956)
.|++.++ |||+++|||. .+|+..+++.. ++.||+++++||.+.++.-- + . ++...
T Consensus 6 ~i~~~~l-kNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~ 84 (343)
T cd04734 6 QLGHLTL-RNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAE 84 (343)
T ss_pred eeCCEEe-cCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHH
Confidence 4678888 9999999995 35788888754 56688999999987665321 1 0 11123
Q ss_pred ccCCCCCCEEEEecCC-----------------C---------------------HHHHHHHHHHHHHcCCCEEEecC--
Q psy2378 58 DFNAEEHPIAFQVGDN-----------------E---------------------PKKLAKSAKIIQKWGYDEINLNC-- 97 (956)
Q Consensus 58 ~~~~~~~p~~vQl~g~-----------------~---------------------~~~~~~aA~~~~~~G~d~IeiN~-- 97 (956)
..|..+.++++||+.. + .++|++||++++++|||+||||+
T Consensus 85 ~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ah 164 (343)
T cd04734 85 AVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAH 164 (343)
T ss_pred HHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 4578899999999721 0 26799999999999999999999
Q ss_pred C-------CCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCC----CcHHHHHHHHHHHHHcC-CC
Q psy2378 98 G-------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI----NSYDFVRDFVGTVSSAG-CR 165 (956)
Q Consensus 98 g-------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~----~~~~~~~~~a~~l~~~G-~~ 165 (956)
| ||..|.|+|+|||+|++|++++.||+++||++++.+++||+|+++++. .+.+++.++++.|+++| +|
T Consensus 165 GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd 244 (343)
T cd04734 165 GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLID 244 (343)
T ss_pred chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCC
Confidence 4 899999999999999999999999999999999999999999987653 34578899999999998 89
Q ss_pred EEEEcccccccc---cCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCc
Q psy2378 166 TFIVHARNAFLK---KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF 240 (956)
Q Consensus 166 ~i~vh~r~~~~~---g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~ 240 (956)
+|+||++..... ...-....+.+..+|+.++++++.+ ++|||+||+|.++++++++++. ||+||+||++++|||
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 999986642111 0000011223345789999999988 7999999999999999999986 999999999999999
Q ss_pred chHHHHH
Q psy2378 241 LMSNFDL 247 (956)
Q Consensus 241 l~~~i~~ 247 (956)
|++++++
T Consensus 324 l~~k~~~ 330 (343)
T cd04734 324 LVAKARE 330 (343)
T ss_pred HHHHHHc
Confidence 9999986
No 48
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=3.4e-32 Score=301.40 Aligned_cols=233 Identities=18% Similarity=0.221 Sum_probs=188.3
Q ss_pred ccccccCCCceEEcc-CcCcCCHHHHHHHHHcCCCcEEEe---------------------cccccccccC-Cchh---c
Q psy2378 3 MINSKYNKRKISIAP-MMNLTDRHCRMFHRQITRYSWLYT---------------------EMFTTQAILG-NKKH---C 56 (956)
Q Consensus 3 ~~~~~~~~~~i~lAP-M~~~td~~fR~~~~~~g~~~l~~t---------------------em~~~~~l~~-~~~~---~ 56 (956)
+...+| +||+++|| |.+.|+..+|.+++. | +|.++| +|+++..+.. .... .
T Consensus 5 ~~g~~l-~npi~~aag~~~~~~~~~~~~~~~-G-~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~ 81 (300)
T TIGR01037 5 LFGIRF-KNPLILASGIMGSGVESLRRIDRS-G-AGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEE 81 (300)
T ss_pred ECCEEC-CCCCEeCCcCCCCCHHHHHHHHHc-C-CcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHH
Confidence 456688 99999999 589999999998776 5 689999 6777666652 2111 1
Q ss_pred cc--cCCCCCCEEEEecCCCHHHHHHHHHHHHHcC--CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC
Q psy2378 57 LD--FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 132 (956)
Q Consensus 57 ~~--~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G--~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 132 (956)
+. .++.+.|+++||+|+++++|+++|+.+++++ +|+||||+|||..+ ++|+.++++|+++.++++++|+.++
T Consensus 82 ~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 82 LKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcC
Confidence 11 2334579999999999999999999999874 99999999999875 5899999999999999999999999
Q ss_pred ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccc--cCC------CCCCCCCCcCc----HHHHHHHHH
Q psy2378 133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK--KLN------PKQNRKIPILK----YNFVYNLKK 200 (956)
Q Consensus 133 ~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~--g~~------~~~~~~~~~~~----~~~i~~v~~ 200 (956)
+||+||++.+.+ +..++++.++++|+|+|++|+++.... ..+ ...+.+.+++. +++++++++
T Consensus 158 ~pv~vKi~~~~~------~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~ 231 (300)
T TIGR01037 158 VPVFAKLSPNVT------DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYK 231 (300)
T ss_pred CCEEEECCCChh------hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHh
Confidence 999999996443 367899999999999999986542100 000 00112333343 488999999
Q ss_pred hCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 201 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 201 ~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
.+ ++|||+||||.|++|+.++++. ||+||+||+++.|||+|+++++.+
T Consensus 232 ~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 232 MV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred cC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHH
Confidence 88 7999999999999999999988 999999999999999999998765
No 49
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=3.8e-32 Score=283.18 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=145.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
+..|+++|+.+++|+++.++|+.+.+ ++|+||||||||++++++.|+|++|++||+.+.++++++++ .++||+||+|+
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~ 143 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRG 143 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCC
Confidence 46799999999999999999999977 79999999999999999999999999999999999999995 59999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~ 221 (956)
++++. +..++++.++++|+|+|+||.+.. | .+.++|++++++++.++++|||+||||.|++|+.+
T Consensus 144 ~~~~~----~~~~~a~~l~~aGad~i~Vd~~~~---g--------~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e 208 (231)
T TIGR00736 144 NCIPL----DELIDALNLVDDGFDGIHVDAMYP---G--------KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKE 208 (231)
T ss_pred CCCcc----hHHHHHHHHHHcCCCEEEEeeCCC---C--------CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHH
Confidence 98653 367999999999999999997641 1 12379999999999884599999999999999999
Q ss_pred Hhhh-cCEEEEccccccC
Q psy2378 222 HLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 222 ~l~~-ad~VmiGR~~l~~ 238 (956)
+++. ||+||+|||++.+
T Consensus 209 ~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 209 MLKAGADFVSVARAILKG 226 (231)
T ss_pred HHHhCCCeEEEcHhhccC
Confidence 9998 9999999999976
No 50
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=99.98 E-value=4.5e-33 Score=264.79 Aligned_cols=106 Identities=29% Similarity=0.569 Sum_probs=93.9
Q ss_pred ccccccc-----ccCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccE
Q psy2378 414 DGTMARA-----QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPI 488 (956)
Q Consensus 414 ~g~~~~~-----~e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv 488 (956)
+|+.+.+ .++++++++||||||||+++++|+++++|||||||||||||+|+||||||++|++|||++++++++||
T Consensus 27 ~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~~PV 106 (141)
T PLN02404 27 EGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAVANSAASGVLSAGLNSGVPC 106 (141)
T ss_pred HHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHHHHHHHHHHHHHHhccCCCE
Confidence 4555543 45568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHhhhcccCceeEEEeccccchHH
Q psy2378 489 INAILTTETIEQANSRILTKGEIIIFINHKNKSLVN 524 (956)
Q Consensus 489 ~~gvlt~~~~~qa~~r~~~~~~~~~~~~~~~~~~~~ 524 (956)
+|||||++|+|||++|++++.+ |.|.+++..
T Consensus 107 ~~GVLt~~~~eQA~~Rag~~~~-----nkG~eaA~a 137 (141)
T PLN02404 107 IFGVLTCDDMEQALNRAGGKAG-----NKGAEAALT 137 (141)
T ss_pred EEEEcCCCCHHHHHHHhCCccc-----CcHHHHHHH
Confidence 9999999999999999986654 355555533
No 51
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.98 E-value=3.2e-32 Score=302.88 Aligned_cols=243 Identities=14% Similarity=0.145 Sum_probs=196.6
Q ss_pred CccccccCCCceEEccCcC---------cCCHHHHHH-HHHcCCCcEEEeccccccccc----C------------Cchh
Q psy2378 2 NMINSKYNKRKISIAPMMN---------LTDRHCRMF-HRQITRYSWLYTEMFTTQAIL----G------------NKKH 55 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~---------~td~~fR~~-~~~~g~~~l~~tem~~~~~l~----~------------~~~~ 55 (956)
.|++.+. |||+++|||.. .|+..+++. .++.||+++++||.+....-- + .++.
T Consensus 8 ~ig~~~l-kNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l 86 (337)
T PRK13523 8 TIKDVTL-KNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKL 86 (337)
T ss_pred eECCEee-ecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHH
Confidence 4677788 99999999953 355677764 466688999999976443221 0 0112
Q ss_pred ccccCCCCCCEEEEecC--C---------------------C------------HHHHHHHHHHHHHcCCCEEEecCC--
Q psy2378 56 CLDFNAEEHPIAFQVGD--N---------------------E------------PKKLAKSAKIIQKWGYDEINLNCG-- 98 (956)
Q Consensus 56 ~~~~~~~~~p~~vQl~g--~---------------------~------------~~~~~~aA~~~~~~G~d~IeiN~g-- 98 (956)
....|..+.++++||+. . . .++|++||++++++|||+||||+|
T Consensus 87 ~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahG 166 (337)
T PRK13523 87 VTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHG 166 (337)
T ss_pred HHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 33457889999999953 1 1 267999999999999999999999
Q ss_pred -------CCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC--CCCCCcHHHHHHHHHHHHHcCCCEEEE
Q psy2378 99 -------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIV 169 (956)
Q Consensus 99 -------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--~~~~~~~~~~~~~a~~l~~~G~~~i~v 169 (956)
||..|.|+|.|||+|+||.+++.||+++||++++.||.+|++.. ...+.+.++..++++.|+++|+|+|+|
T Consensus 167 yLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~v 246 (337)
T PRK13523 167 YLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDV 246 (337)
T ss_pred hHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 89999999999999999999999999999999999999999973 122335678899999999999999999
Q ss_pred cccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHH
Q psy2378 170 HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 170 h~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
|+++... +....+ +..+|++++++++.+ ++||+++|+|.++++++++++. ||+|++||++++||||++++++
T Consensus 247 s~g~~~~----~~~~~~-~~~~~~~~~~ik~~~-~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 247 SSGAVVP----ARIDVY-PGYQVPFAEHIREHA-NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred CCCCCCC----CCCCCC-ccccHHHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 9986310 011111 234789999999987 7999999999999999999987 9999999999999999999998
Q ss_pred hhcc
Q psy2378 248 NYYS 251 (956)
Q Consensus 248 ~~~~ 251 (956)
.+..
T Consensus 321 ~~~~ 324 (337)
T PRK13523 321 ELGF 324 (337)
T ss_pred HcCC
Confidence 6643
No 52
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=99.97 E-value=1.4e-32 Score=260.31 Aligned_cols=101 Identities=40% Similarity=0.669 Sum_probs=93.2
Q ss_pred ccCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEEEEecCCCCHHH
Q psy2378 421 QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQ 500 (956)
Q Consensus 421 ~e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~~gvlt~~~~~q 500 (956)
..+|+++++|||+||||+++++|+++++|||||||||||||+|+||||||+++++|||++|+++++||+|||||++|+||
T Consensus 44 ~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~eq 123 (152)
T COG0054 44 DVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQ 123 (152)
T ss_pred CcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHhhCCCeEeeecCCCcHHH
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCceeEEEeccccchHHHH
Q psy2378 501 ANSRILTKGEIIIFINHKNKSLVNLI 526 (956)
Q Consensus 501 a~~r~~~~~~~~~~~~~~~~~~~~~~ 526 (956)
|++|++.|++ |+|..++..-+
T Consensus 124 A~~rag~~~g-----nkG~~Aa~aAl 144 (152)
T COG0054 124 AIERAGTKAG-----NKGAEAAEAAL 144 (152)
T ss_pred HHHHhCcccc-----ccHHHHHHHHH
Confidence 9999999876 56666664433
No 53
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=99.97 E-value=3.6e-32 Score=259.28 Aligned_cols=114 Identities=39% Similarity=0.587 Sum_probs=97.7
Q ss_pred hhhccccccccccc-----ccCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHh
Q psy2378 407 ICEILNDDGTMARA-----QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQIS 481 (956)
Q Consensus 407 i~e~~~~~g~~~~~-----~e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~ 481 (956)
|++.|. +|+.+.+ .+++++++||||+||||+++++|+++++|||||||||||||+|+||||||+++++|||++|
T Consensus 14 i~~~L~-~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~s 92 (138)
T TIGR00114 14 ITDMLL-KGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLA 92 (138)
T ss_pred HHHHHH-HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHH
Confidence 334333 4555544 4456899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccEEEEecCCCCHHHHHhhhcccCceeEEEeccccchHHHH
Q psy2378 482 IKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNKSLVNLI 526 (956)
Q Consensus 482 ~~~~~pv~~gvlt~~~~~qa~~r~~~~~~~~~~~~~~~~~~~~~~ 526 (956)
+++++||+|||||++|+|||++|++++++ |.|.+++...+
T Consensus 93 l~~~~PV~~GvLt~~~~eQa~~R~~~~~~-----nkG~eaA~aal 132 (138)
T TIGR00114 93 LDYDKPVIFGILTTGTIEQAIERAGDKAG-----NKGVEAAVAAL 132 (138)
T ss_pred hhhCCCEEEEecCCCCHHHHHHHcccccc-----ccHHHHHHHHH
Confidence 99999999999999999999999997765 45666654433
No 54
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=99.97 E-value=4.4e-32 Score=261.66 Aligned_cols=112 Identities=18% Similarity=0.404 Sum_probs=90.8
Q ss_pred cccccccc-----cCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccE
Q psy2378 414 DGTMARAQ-----EKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPI 488 (956)
Q Consensus 414 ~g~~~~~~-----e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv 488 (956)
+|+...+. +++++++|||||||||+++++|+++++|||||||||||||+|+||||||++|++|||++++++++||
T Consensus 30 ~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~~PV 109 (158)
T PRK12419 30 KGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQLDTEVPV 109 (158)
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHHhccCCCE
Confidence 35555444 4568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHhhhcccCceeEEEeccccchHHHHh
Q psy2378 489 INAILTTETIEQANSRILTKGEIIIFINHKNKSLVNLIK 527 (956)
Q Consensus 489 ~~gvlt~~~~~qa~~r~~~~~~~~~~~~~~~~~~~~~~~ 527 (956)
+|||||++|+|||++|........ -|.|.+++..-+.
T Consensus 110 ~fGVLT~~~~eqA~~rqa~~Ra~~--~nKG~eaA~aale 146 (158)
T PRK12419 110 FSVVLTPHHFHESEEHHDFFRAHF--VVKGAEAAHACAD 146 (158)
T ss_pred EEEecCCCcHHHHHHHHHHhhcCc--cccHHHHHHHHHH
Confidence 999999999996655422111110 1556666644333
No 55
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=2e-30 Score=291.18 Aligned_cols=244 Identities=16% Similarity=0.204 Sum_probs=189.7
Q ss_pred Cccc-cccCCCceEEccCcC--------cCCHHHHHH-HHHcCCCcEEEeccccccccc---C--------C--------
Q psy2378 2 NMIN-SKYNKRKISIAPMMN--------LTDRHCRMF-HRQITRYSWLYTEMFTTQAIL---G--------N-------- 52 (956)
Q Consensus 2 ~~~~-~~~~~~~i~lAPM~~--------~td~~fR~~-~~~~g~~~l~~tem~~~~~l~---~--------~-------- 52 (956)
.|++ .++ ||||++|||.. +|+....+. .|+.||++|++||.+.+..-- . .
T Consensus 6 ~i~~~~~l-kNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~ 84 (338)
T cd04733 6 TLPNGATL-PNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAF 84 (338)
T ss_pred EcCCCcEE-cccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHH
Confidence 4675 788 99999999953 466777765 467789999999976443221 0 0
Q ss_pred chhccccCCCCCCEEEEecC--C---------------------------------------CHHHHHHHHHHHHHcCCC
Q psy2378 53 KKHCLDFNAEEHPIAFQVGD--N---------------------------------------EPKKLAKSAKIIQKWGYD 91 (956)
Q Consensus 53 ~~~~~~~~~~~~p~~vQl~g--~---------------------------------------~~~~~~~aA~~~~~~G~d 91 (956)
++.....|..+.++++||+. . ..++|++||++++++|||
T Consensus 85 ~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfD 164 (338)
T cd04733 85 REWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFD 164 (338)
T ss_pred HHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 11123457788999999863 0 026799999999999999
Q ss_pred EEEecCCC---------CcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccC--CCCCCcHHHHHHHHHH
Q psy2378 92 EINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIG--IDDINSYDFVRDFVGT 158 (956)
Q Consensus 92 ~IeiN~gC---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g--~~~~~~~~~~~~~a~~ 158 (956)
+||||+|| |..|.|+|.|||+|+||++++.|||++||++++ +||.+|++.. .....+.+++.++++.
T Consensus 165 gVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~ 244 (338)
T cd04733 165 GVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEA 244 (338)
T ss_pred EEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHH
Confidence 99999996 999999999999999999999999999999994 7899999731 0111234578899999
Q ss_pred HHHcCCCEEEEcccccccccCC--CC-CCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcc
Q psy2378 159 VSSAGCRTFIVHARNAFLKKLN--PK-QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGR 233 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~~~~g~~--~~-~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR 233 (956)
|+++|+|+|+||+|+....... +. .....+...++.++++++.+ ++||+++|+|.++++++++++. ||+|++||
T Consensus 245 Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR 323 (338)
T cd04733 245 LEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIGLAR 323 (338)
T ss_pred HHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeCh
Confidence 9999999999999873110000 00 00111223478888999998 8999999999999999999987 99999999
Q ss_pred ccccCCcchHHHHH
Q psy2378 234 EAYKNPFLMSNFDL 247 (956)
Q Consensus 234 ~~l~~P~l~~~i~~ 247 (956)
++++||||++|+++
T Consensus 324 ~~iadP~~~~k~~~ 337 (338)
T cd04733 324 PLALEPDLPNKLLA 337 (338)
T ss_pred HhhhCccHHHHHhc
Confidence 99999999999875
No 56
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.97 E-value=4e-30 Score=291.90 Aligned_cols=244 Identities=15% Similarity=0.193 Sum_probs=190.0
Q ss_pred CccccccCCCceEEccCcC---------cCCHHHHHHH-HHcCCCcEEEeccccccccc-----------C-C-------
Q psy2378 2 NMINSKYNKRKISIAPMMN---------LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL-----------G-N------- 52 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~---------~td~~fR~~~-~~~g~~~l~~tem~~~~~l~-----------~-~------- 52 (956)
.|++.++ |||+++|||.. .|+....+.. ++.||+++++||.+.+..-. . .
T Consensus 6 ~ig~~~l-kNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (382)
T cd02931 6 KIGKVEI-KNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRT 84 (382)
T ss_pred eECCEEE-eCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHH
Confidence 4677788 99999999952 3556666654 56688999999976443210 0 0
Q ss_pred -chhccccCCCCCCEEEEecCC-----------------------------C------------HHHHHHHHHHHHHcCC
Q psy2378 53 -KKHCLDFNAEEHPIAFQVGDN-----------------------------E------------PKKLAKSAKIIQKWGY 90 (956)
Q Consensus 53 -~~~~~~~~~~~~p~~vQl~g~-----------------------------~------------~~~~~~aA~~~~~~G~ 90 (956)
++.....|..+.++++||+.. . .++|++||++++++||
T Consensus 85 ~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGf 164 (382)
T cd02931 85 AKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGF 164 (382)
T ss_pred HHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 111223477899999999521 0 1579999999999999
Q ss_pred CEEEecC---CC-------CcceeeeCcccccccCChHHHHHHHHHHhhcc--CccEEEEecc-----CCC---------
Q psy2378 91 DEINLNC---GC-------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI-----GID--------- 144 (956)
Q Consensus 91 d~IeiN~---gC-------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~-----g~~--------- 144 (956)
|+||||+ || |..|.|+|.|||+|++|++++.||+++||+++ ++||++|++. +++
T Consensus 165 DgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~ 244 (382)
T cd02931 165 DGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEF 244 (382)
T ss_pred CEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccccccc
Confidence 9999998 74 89999999999999999999999999999999 5799999985 111
Q ss_pred --CCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHH
Q psy2378 145 --DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 222 (956)
Q Consensus 145 --~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~ 222 (956)
.+.+.++..++++.|+++|+|+|+||+++........+.....+...++.++++++.+ ++|||++|+|.++++++++
T Consensus 245 ~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~ 323 (382)
T cd02931 245 QEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVIMAGRMEDPELASEA 323 (382)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHH
Confidence 1235678899999999999999999988731100011111112223467889999988 8999999999999999999
Q ss_pred hhh--cCEEEEccccccCCcchHHHHH
Q psy2378 223 LNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 223 l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
++. ||+|++||++++||||++++++
T Consensus 324 l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 324 INEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred HHcCCCCeeeechHhHhCccHHHHHHc
Confidence 987 9999999999999999999986
No 57
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.97 E-value=9.6e-30 Score=284.23 Aligned_cols=236 Identities=18% Similarity=0.213 Sum_probs=189.8
Q ss_pred CccccccCCCceEEccCcC-------cCCHHHHHHH-HHcCCCcEEEeccccccccc--C-------Cc--------hhc
Q psy2378 2 NMINSKYNKRKISIAPMMN-------LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL--G-------NK--------KHC 56 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~-------~td~~fR~~~-~~~g~~~l~~tem~~~~~l~--~-------~~--------~~~ 56 (956)
.|++.++ |||++++||.. +|+..+.+.. ++.||+++++||.+.+..-. + .. +..
T Consensus 6 ~ig~~~l-kNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~ 84 (361)
T cd04747 6 TLKGLTL-PNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVV 84 (361)
T ss_pred eECCEEe-eCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHH
Confidence 4677888 99999999953 4777888754 66688999999976553211 1 01 112
Q ss_pred cccCCCCCCEEEEecC--CC--------------------------------------HHHHHHHHHHHHHcCCCEEEec
Q psy2378 57 LDFNAEEHPIAFQVGD--NE--------------------------------------PKKLAKSAKIIQKWGYDEINLN 96 (956)
Q Consensus 57 ~~~~~~~~p~~vQl~g--~~--------------------------------------~~~~~~aA~~~~~~G~d~IeiN 96 (956)
...|..+.++++||+. .. .++|++||++++++|||+||||
T Consensus 85 d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih 164 (361)
T cd04747 85 DEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELH 164 (361)
T ss_pred HHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 2357889999999952 10 1579999999999999999999
Q ss_pred CCC---------CcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccCCC-------CCCcHHHHHHHHHH
Q psy2378 97 CGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGID-------DINSYDFVRDFVGT 158 (956)
Q Consensus 97 ~gC---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~-------~~~~~~~~~~~a~~ 158 (956)
++| |..|+|+|+|||+|+||.+++.||+++||++++ +||.+|++. |+ .+.+.++..++++.
T Consensus 165 ~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~~~~~ 243 (361)
T cd04747 165 GAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEALLAP 243 (361)
T ss_pred cccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHHHHHH
Confidence 998 999999999999999999999999999999984 799999984 21 12455678899999
Q ss_pred HHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCC------------------CCHHHHH
Q psy2378 159 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI------------------KTKKEID 220 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI------------------~s~~da~ 220 (956)
|+++|+|+|+++.+..+ .+.+ .+.++..++.+++.+ ++||+++|+| .|+++++
T Consensus 244 l~~~gvd~i~vs~g~~~-------~~~~-~~~~~~~~~~~k~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~ 314 (361)
T cd04747 244 LVDAGVDIFHCSTRRFW-------EPEF-EGSELNLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLL 314 (361)
T ss_pred HHHcCCCEEEecCCCcc-------CCCc-CccchhHHHHHHHHc-CCCEEEECCcccccccccccccccccccCCHHHHH
Confidence 99999999998765311 1111 123678888899987 7999999999 6999999
Q ss_pred HHhhh--cCEEEEccccccCCcchHHHHHh
Q psy2378 221 LHLNY--IDGVMLGREAYKNPFLMSNFDLN 248 (956)
Q Consensus 221 ~~l~~--ad~VmiGR~~l~~P~l~~~i~~~ 248 (956)
++++. ||+||+||++++||||++++++.
T Consensus 315 ~~l~~g~~D~V~~gR~~iadP~~~~k~~~g 344 (361)
T cd04747 315 ERLERGEFDLVAVGRALLSDPAWVAKVREG 344 (361)
T ss_pred HHHHCCCCCeehhhHHHHhCcHHHHHHHcC
Confidence 99986 99999999999999999999873
No 58
>KOG3243|consensus
Probab=99.97 E-value=7.9e-31 Score=235.14 Aligned_cols=102 Identities=37% Similarity=0.542 Sum_probs=97.7
Q ss_pred ccccCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEEEEecCCCCH
Q psy2378 419 RAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETI 498 (956)
Q Consensus 419 ~~~e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~~gvlt~~~~ 498 (956)
.++++||.+.||||+||||..+|.+.+++.||||||+|++|||.|.|||||+++++.|||+++++.++|||||+|||.|+
T Consensus 47 ~V~eenI~ie~VPGS~Elp~g~~~~~~r~~~daVi~IGvlIkGsTmHfeyis~s~~hglm~~~~~sgvPvIfGlLTc~~e 126 (158)
T KOG3243|consen 47 SVREENIEIEWVPGSFELPVGAQNLGKRGKFDAVICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVPVIFGLLTCEDE 126 (158)
T ss_pred CcchhceeEEEcCCceeccHHHHhhhhccCceEEEEEEEEEecCchhHHHHHHHHHHHHhhhcccCCCCEEEEEeeeccH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeEEEeccccchHH
Q psy2378 499 EQANSRILTKGEIIIFINHKNKSLVN 524 (956)
Q Consensus 499 ~qa~~r~~~~~~~~~~~~~~~~~~~~ 524 (956)
|||+.|||++++ +|||++--+.
T Consensus 127 eQAL~RaG~~~g----hNhG~dwg~a 148 (158)
T KOG3243|consen 127 EQALNRAGGKAG----HNHGADWGLA 148 (158)
T ss_pred HHHHHhhccccc----cccchhHHHH
Confidence 999999999988 8999986544
No 59
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.97 E-value=1.5e-29 Score=282.26 Aligned_cols=232 Identities=17% Similarity=0.207 Sum_probs=188.4
Q ss_pred CccccccCCCceEEccCcC--------cCCHHHHHHHHHcCCCcEEEeccccccccc----CC------------chhcc
Q psy2378 2 NMINSKYNKRKISIAPMMN--------LTDRHCRMFHRQITRYSWLYTEMFTTQAIL----GN------------KKHCL 57 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~--------~td~~fR~~~~~~g~~~l~~tem~~~~~l~----~~------------~~~~~ 57 (956)
.|++.++ |||+++|||.. +|+...++..++..| ++++||.+.+..-- +. ++...
T Consensus 7 ~ig~~~l-kNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~ 84 (338)
T cd02933 7 KLGNLTL-KNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTD 84 (338)
T ss_pred eeCCEee-cCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHH
Confidence 4677788 99999999953 466777776554444 89999987654331 10 11123
Q ss_pred ccCCCCCCEEEEecC--C-----------------------------------C------------HHHHHHHHHHHHHc
Q psy2378 58 DFNAEEHPIAFQVGD--N-----------------------------------E------------PKKLAKSAKIIQKW 88 (956)
Q Consensus 58 ~~~~~~~p~~vQl~g--~-----------------------------------~------------~~~~~~aA~~~~~~ 88 (956)
..|..+.++++||.. . . .++|++||++++++
T Consensus 85 ~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~a 164 (338)
T cd02933 85 AVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEA 164 (338)
T ss_pred HHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 457789999999842 0 0 25799999999999
Q ss_pred CCCEEEecCCC---------CcceeeeCcccccccCChHHHHHHHHHHhhccCc-cEEEEeccCC-----CCCCcHHHHH
Q psy2378 89 GYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGI-----DDINSYDFVR 153 (956)
Q Consensus 89 G~d~IeiN~gC---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g~-----~~~~~~~~~~ 153 (956)
|||+||||++| |..|.|+|.|||+|+||.+++.||+++||++++. ||++|++... ..+.+.++..
T Consensus 165 GfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~ 244 (338)
T cd02933 165 GFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFS 244 (338)
T ss_pred CCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHH
Confidence 99999999998 9999999999999999999999999999999965 8999998631 1123557889
Q ss_pred HHHHHHHHcCCCEEEEc-ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEE
Q psy2378 154 DFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVM 230 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh-~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~Vm 230 (956)
++++.|++.|+|+|+|+ +++. . +. +..+|++++++++.+ ++|||++|+|+ +++++++++. ||+|+
T Consensus 245 ~~~~~l~~~g~d~i~vs~g~~~---~-----~~--~~~~~~~~~~ik~~~-~ipvi~~G~i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEPRVA---G-----NP--EDQPPDFLDFLRKAF-KGPLIAAGGYD-AESAEAALADGKADLVA 312 (338)
T ss_pred HHHHHHHHcCCcEEEEecCCCC---C-----cc--cccchHHHHHHHHHc-CCCEEEECCCC-HHHHHHHHHcCCCCEEE
Confidence 99999999999999994 4432 1 11 457899999999998 79999999997 9999999987 99999
Q ss_pred EccccccCCcchHHHHH
Q psy2378 231 LGREAYKNPFLMSNFDL 247 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~ 247 (956)
+||++++||||++|+++
T Consensus 313 ~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 313 FGRPFIANPDLVERLKN 329 (338)
T ss_pred eCHhhhhCcCHHHHHhc
Confidence 99999999999999986
No 60
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=99.97 E-value=1.2e-30 Score=253.87 Aligned_cols=99 Identities=41% Similarity=0.649 Sum_probs=89.6
Q ss_pred ccCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEEEEecCCCCHHH
Q psy2378 421 QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQ 500 (956)
Q Consensus 421 ~e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~~gvlt~~~~~q 500 (956)
++.+++++||||+||||+++++|+++++|||||||||||||+|+||||||++|++|||++++++++||+|||||++|+||
T Consensus 44 ~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~~GVLt~~~~eQ 123 (154)
T PRK00061 44 SEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETGVPVGFGVLTTDTIEQ 123 (154)
T ss_pred CccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCCCCHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCceeEEEeccccchHH
Q psy2378 501 ANSRILTKGEIIIFINHKNKSLVN 524 (956)
Q Consensus 501 a~~r~~~~~~~~~~~~~~~~~~~~ 524 (956)
|++|++.+.. |.|..++..
T Consensus 124 a~~R~~~~~~-----nkG~eaa~a 142 (154)
T PRK00061 124 AIERAGTKAG-----NKGAEAALA 142 (154)
T ss_pred HHHHhCcccc-----ccHHHHHHH
Confidence 9999984433 455555533
No 61
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.96 E-value=8.2e-30 Score=287.18 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=190.2
Q ss_pred Cccc-cccCCCceEEccCcC--------cCCHHHHHHH-HHcCCCcEEEeccccccccc----C------------Cchh
Q psy2378 2 NMIN-SKYNKRKISIAPMMN--------LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----G------------NKKH 55 (956)
Q Consensus 2 ~~~~-~~~~~~~i~lAPM~~--------~td~~fR~~~-~~~g~~~l~~tem~~~~~l~----~------------~~~~ 55 (956)
.|++ .+. |||+++|||.. +|+..+.+.. ++.| ++|++||.+.+..-- + .++.
T Consensus 6 ~ig~g~~l-kNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g-~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l 83 (353)
T cd04735 6 TLKNGVTL-KNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGG-VGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKL 83 (353)
T ss_pred EcCCCeEE-eCcceecccccCccCCCCCCCHHHHHHHHHHhCC-CCEEEECceEECcccCcCCCCceecChhhhHHHHHH
Confidence 4677 787 99999999943 5677777754 4556 899999987554321 0 0111
Q ss_pred ccccCCCCCCEEEEecCC----------------------------C------------HHHHHHHHHHHHHcCCCEEEe
Q psy2378 56 CLDFNAEEHPIAFQVGDN----------------------------E------------PKKLAKSAKIIQKWGYDEINL 95 (956)
Q Consensus 56 ~~~~~~~~~p~~vQl~g~----------------------------~------------~~~~~~aA~~~~~~G~d~Iei 95 (956)
....|..+.++++||+.. . .++|++||++++++|||+|||
T Consensus 84 ~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVei 163 (353)
T cd04735 84 AQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEI 163 (353)
T ss_pred HHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 334578899999999521 0 267999999999999999999
Q ss_pred cCC---------CCcceeeeCcccccccCChHHHHHHHHHHhhccC----ccEEEEeccCCCC----CCcHHHHHHHHHH
Q psy2378 96 NCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE----IDITVKHRIGIDD----INSYDFVRDFVGT 158 (956)
Q Consensus 96 N~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~----~pv~vKir~g~~~----~~~~~~~~~~a~~ 158 (956)
|++ ||..|+|+|+|||+++||++++.||+++||++++ .++.|++|+++++ +.+.++..++++.
T Consensus 164 h~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~ 243 (353)
T cd04735 164 HGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDK 243 (353)
T ss_pred ccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHH
Confidence 985 8999999999999999999999999999999997 7788888887654 2345788999999
Q ss_pred HHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 159 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
|+++|+|+|+||+++.. . . ..+.+...+..++.+++.+ .++|||++|+|+|+++++++++. ||+||+||+++
T Consensus 244 L~~~GvD~I~Vs~g~~~--~---~-~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~li 317 (353)
T cd04735 244 LADKGLDYLHISLWDFD--R---K-SRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLL 317 (353)
T ss_pred HHHcCCCEEEeccCccc--c---c-cccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHH
Confidence 99999999999986521 1 1 1112223567777777765 26999999999999999999998 99999999999
Q ss_pred cCCcchHHHHH
Q psy2378 237 KNPFLMSNFDL 247 (956)
Q Consensus 237 ~~P~l~~~i~~ 247 (956)
+||+|++++++
T Consensus 318 adPdl~~k~~~ 328 (353)
T cd04735 318 VDPDWVEKIKE 328 (353)
T ss_pred hCccHHHHHHc
Confidence 99999999986
No 62
>KOG2334|consensus
Probab=99.96 E-value=1.1e-29 Score=272.09 Aligned_cols=261 Identities=18% Similarity=0.293 Sum_probs=214.7
Q ss_pred CccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc-CC---ch--------------hccccCC-C
Q psy2378 2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN---KK--------------HCLDFNA-E 62 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~-~~---~~--------------~~~~~~~-~ 62 (956)
+|....| .|+++||||++++++|.|.++.+|| +|++|||-+.+..++ .. +. ..+..++ +
T Consensus 3 ~~~~l~y-~nk~iLApMvr~G~lpmrLLal~~G-adlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 3 KISSLFY-RNKLILAPMVRAGELPMRLLALQYG-ADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred chhhhhh-cCcEeeehHHHhccchHHHHHHHhc-cceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 3556688 9999999999999999999999999 599999999888887 21 11 1111222 3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
...+++|++.++|+...++|+.+.. ...|||+|||||-.+....|.|++|+.+|+.+..|+.++.+...+|+++|||+-
T Consensus 81 ~~rlilQ~gT~sa~lA~e~A~lv~n-DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L 159 (477)
T KOG2334|consen 81 NSRLILQIGTASAELALEAAKLVDN-DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL 159 (477)
T ss_pred cCeEEEEecCCcHHHHHHHHHHhhc-ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec
Confidence 4579999999999999999998776 589999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC---HHHH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT---KKEI 219 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s---~~da 219 (956)
.+.++ +.++++++++.|+.+|+||+|+. ..+...|+.-++++++.+.++.||||.||++.+ ..|.
T Consensus 160 ~s~ed----tL~lv~ri~~tgi~ai~vh~rt~--------d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di 227 (477)
T KOG2334|consen 160 DSKED----TLKLVKRICATGIAAITVHCRTR--------DERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDI 227 (477)
T ss_pred CCccc----HHHHHHHHHhcCCceEEEEeecc--------ccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhH
Confidence 55543 67999999999999999999994 566677889999999999987799999999999 5566
Q ss_pred HHHhhh--cCEEEEccccccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHH
Q psy2378 220 DLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPN 288 (956)
Q Consensus 220 ~~~l~~--ad~VmiGR~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~ 288 (956)
+...+. +|+||++|++..||.+|.+ + ..+++.++++.|++..-.......++.+....
T Consensus 228 ~~~~~~~~~~~vmiAR~A~~n~SiF~~-------e----G~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~ 287 (477)
T KOG2334|consen 228 EDFQEKTGADSVMIARAAESNPSIFRE-------E----GCLSEKEVIREFLRLAVQYDNHYGNTKYCLQR 287 (477)
T ss_pred HHHHHHhccchhhhhHhhhcCCceeee-------c----CCchHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 665554 9999999999999999964 1 23667788888877766555554444444333
No 63
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.96 E-value=8.1e-30 Score=287.73 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=191.8
Q ss_pred CccccccCCCceEEccCcC-------cCCHHHHHHH-HHcCCCcEEEeccccccccc----C------------Cchhcc
Q psy2378 2 NMINSKYNKRKISIAPMMN-------LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----G------------NKKHCL 57 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~-------~td~~fR~~~-~~~g~~~l~~tem~~~~~l~----~------------~~~~~~ 57 (956)
.|++.++ ||||++|||.. .|+..+++.. ++.||++|++||.+..+.-- + .++...
T Consensus 6 ~ig~~~l-kNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~ 84 (353)
T cd02930 6 DLGFTTL-RNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITD 84 (353)
T ss_pred eECCEEE-ccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHH
Confidence 4677888 99999999962 3677777754 56688999999976554321 1 011133
Q ss_pred ccCCCCCCEEEEecCC----------------------C------------HHHHHHHHHHHHHcCCCEEEecCC-----
Q psy2378 58 DFNAEEHPIAFQVGDN----------------------E------------PKKLAKSAKIIQKWGYDEINLNCG----- 98 (956)
Q Consensus 58 ~~~~~~~p~~vQl~g~----------------------~------------~~~~~~aA~~~~~~G~d~IeiN~g----- 98 (956)
..|..+.++++||+.. . .++|++||++++++|||+||||++
T Consensus 85 ~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl 164 (353)
T cd02930 85 AVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLI 164 (353)
T ss_pred HHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHH
Confidence 4578899999999521 1 378999999999999999999875
Q ss_pred ----CCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCC----CCcHHHHHHHHHHHHHcCCCEEEEc
Q psy2378 99 ----CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD----INSYDFVRDFVGTVSSAGCRTFIVH 170 (956)
Q Consensus 99 ----CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~----~~~~~~~~~~a~~l~~~G~~~i~vh 170 (956)
||..|.|+|+|||+|+||++++.+|+++||++++.++.|++|+++.+ ..+.++++++++.|+++|+|+|+|+
T Consensus 165 ~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 165 NQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred HHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 99999999999999999999999999999999988888888887653 2356778999999999999999997
Q ss_pred ccccccccCCCCCCCCCCcCcH-HHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHH
Q psy2378 171 ARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 171 ~r~~~~~g~~~~~~~~~~~~~~-~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
... .....+....+.++..| +..+++++.+ ++||+++|++.++++++++++. ||+||+||++++||||++++++
T Consensus 245 ~g~--~e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~ 321 (353)
T cd02930 245 IGW--HEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred CCc--CCCCCccccccCCchhhHHHHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHh
Confidence 542 11111111112233334 5578899988 7999999999999999999987 9999999999999999999987
No 64
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=4.6e-29 Score=275.97 Aligned_cols=229 Identities=18% Similarity=0.231 Sum_probs=186.5
Q ss_pred ccccccCCCceEEccCcCc--CCHHHHHHHHHcCCCcEEEecccccccccCC---c-------------------hhccc
Q psy2378 3 MINSKYNKRKISIAPMMNL--TDRHCRMFHRQITRYSWLYTEMFTTQAILGN---K-------------------KHCLD 58 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~--td~~fR~~~~~~g~~~l~~tem~~~~~l~~~---~-------------------~~~~~ 58 (956)
+...+| +||+++| +|. ++..||.++...| +|.++|++++.+...++ + ..++.
T Consensus 4 ~~G~~~-~nP~~~a--ag~~~~~~~~~~~~~~g~-~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~ 79 (296)
T cd04740 4 LAGLRL-KNPVILA--SGTFGFGEELSRVADLGK-LGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLE 79 (296)
T ss_pred ECCEEc-CCCCEEC--CCCCCCHHHHHHHHhcCC-ceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHH
Confidence 456788 9999998 554 8889999877654 79999999987765421 1 11111
Q ss_pred c-----CCCCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc
Q psy2378 59 F-----NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 133 (956)
Q Consensus 59 ~-----~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 133 (956)
. +..+.|+++||+|+++++|+++|++++++|+|+||||++||..+. .|+.++++|+++.++++++|+.+++
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~----~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKG----GGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC----CcccccCCHHHHHHHHHHHHhccCC
Confidence 1 234689999999999999999999999999999999999998652 3788889999999999999999999
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc---------------cccCCCCCCCCCCcCcHHHHHHH
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNL 198 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~---------------~~g~~~~~~~~~~~~~~~~i~~v 198 (956)
||+||++...+ +..++++.++++|+|+|+++.++.. ..|++|+ ...+..|++++++
T Consensus 156 Pv~vKl~~~~~------~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~---~~~~~~~~~i~~i 226 (296)
T cd04740 156 PVIVKLTPNVT------DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGP---AIKPIALRMVYQV 226 (296)
T ss_pred CEEEEeCCCch------hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCc---ccchHHHHHHHHH
Confidence 99999987543 3678999999999999998644310 0122222 2234578999999
Q ss_pred HHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 199 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 199 ~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
++.+ ++|||++|||.|++|+.++++. ||+||+||+++.|||+++++++.+
T Consensus 227 ~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 227 YKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred HHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHH
Confidence 9988 7999999999999999999988 999999999999999999998765
No 65
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.96 E-value=2e-29 Score=285.02 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=189.1
Q ss_pred CccccccCCCceEEccCcC----cCCHHHH-HH-HHHcCCCcEEEeccccccccc----C-------------Cchhccc
Q psy2378 2 NMINSKYNKRKISIAPMMN----LTDRHCR-MF-HRQITRYSWLYTEMFTTQAIL----G-------------NKKHCLD 58 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~----~td~~fR-~~-~~~~g~~~l~~tem~~~~~l~----~-------------~~~~~~~ 58 (956)
.|++.++ |||+++|||.. .++..+. +. .|+.||++|++||.+.+..-- + .++....
T Consensus 13 ~ig~~~l-kNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~ 91 (370)
T cd02929 13 KIGPVTA-RNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDA 91 (370)
T ss_pred cCCCEEe-ccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHH
Confidence 5778888 99999999953 2333332 23 367788999999976443221 1 0111234
Q ss_pred cCCCCCCEEEEecCC-----------------------------C------------HHHHHHHHHHHHHcCCCEEEecC
Q psy2378 59 FNAEEHPIAFQVGDN-----------------------------E------------PKKLAKSAKIIQKWGYDEINLNC 97 (956)
Q Consensus 59 ~~~~~~p~~vQl~g~-----------------------------~------------~~~~~~aA~~~~~~G~d~IeiN~ 97 (956)
.|..+.++++||+.. . .++|++||++++++|||+||||+
T Consensus 92 vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ 171 (370)
T cd02929 92 VHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYA 171 (370)
T ss_pred HHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 577889999999420 0 26799999999999999999999
Q ss_pred CC---------CcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCC------CcHHHHHHHHHHHHHc
Q psy2378 98 GC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI------NSYDFVRDFVGTVSSA 162 (956)
Q Consensus 98 gC---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~------~~~~~~~~~a~~l~~~ 162 (956)
+| |..|.|+|+|||+|+||++++.||+++||++++.++.|++|+++++. .+.+++.++++.|++.
T Consensus 172 ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~ 251 (370)
T cd02929 172 AHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL 251 (370)
T ss_pred cccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh
Confidence 98 99999999999999999999999999999999888888888875431 2467788999999876
Q ss_pred CCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCc
Q psy2378 163 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF 240 (956)
Q Consensus 163 G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~ 240 (956)
+|+++++.......+.. ...+.+...|+.++++|+.+ ++|||++|+|.++++++++++. ||+|++||++++|||
T Consensus 252 -~D~i~vs~g~~~~~~~~--~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~ 327 (370)
T cd02929 252 -PDLWDVNVGDWANDGED--SRFYPEGHQEPYIKFVKQVT-SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPF 327 (370)
T ss_pred -CCEEEecCCCccccccc--cccCCccccHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCch
Confidence 89999987642111111 11222345688889999988 7999999999999999999997 999999999999999
Q ss_pred chHHHHH
Q psy2378 241 LMSNFDL 247 (956)
Q Consensus 241 l~~~i~~ 247 (956)
|++++++
T Consensus 328 l~~k~~~ 334 (370)
T cd02929 328 LPKKIRE 334 (370)
T ss_pred HHHHHHc
Confidence 9999987
No 66
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.96 E-value=2.5e-29 Score=282.44 Aligned_cols=244 Identities=18% Similarity=0.183 Sum_probs=194.3
Q ss_pred CccccccCCCceEEccCcC--------cCCHHHHHHH-HHcCCCcEEEeccccccccc----C------------Cchhc
Q psy2378 2 NMINSKYNKRKISIAPMMN--------LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----G------------NKKHC 56 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~--------~td~~fR~~~-~~~g~~~l~~tem~~~~~l~----~------------~~~~~ 56 (956)
.|++.+. +||+++|||.. .|+..+++.. |+.||++|++||.+.....- + .++..
T Consensus 5 ~i~~~~l-~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (327)
T cd02803 5 KIGGLTL-KNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLT 83 (327)
T ss_pred ccCCEee-ccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHH
Confidence 4677888 99999999954 4677788765 55688999999977554332 1 01113
Q ss_pred cccCCCCCCEEEEecCC--------------------------C------------HHHHHHHHHHHHHcCCCEEEecCC
Q psy2378 57 LDFNAEEHPIAFQVGDN--------------------------E------------PKKLAKSAKIIQKWGYDEINLNCG 98 (956)
Q Consensus 57 ~~~~~~~~p~~vQl~g~--------------------------~------------~~~~~~aA~~~~~~G~d~IeiN~g 98 (956)
...|..+.++++||+.. . .++|+++|++++++|||+||||++
T Consensus 84 ~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 84 EAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 34577888899998621 0 267999999999999999999998
Q ss_pred ---------CCcceeeeCcccccccCChHHHHHHHHHHhhcc--CccEEEEeccCCC--CCCcHHHHHHHHHHHHHcCCC
Q psy2378 99 ---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID--DINSYDFVRDFVGTVSSAGCR 165 (956)
Q Consensus 99 ---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~--~~~~~~~~~~~a~~l~~~G~~ 165 (956)
||..|.|+|.||+++++|++++.|++++||+++ ++||.||++.... ...+.+++.++++.|+++|+|
T Consensus 164 ~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d 243 (327)
T cd02803 164 HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVD 243 (327)
T ss_pred hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999999 6799999987532 223456789999999999999
Q ss_pred EEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchH
Q psy2378 166 TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMS 243 (956)
Q Consensus 166 ~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~ 243 (956)
+|++++++..............++.+++.++++++.+ ++||+++|+|.++++++++++. ||+|++||+++.||+|++
T Consensus 244 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 244 ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 9999988732111000000122356789999999988 7999999999999999999987 999999999999999999
Q ss_pred HHHH
Q psy2378 244 NFDL 247 (956)
Q Consensus 244 ~i~~ 247 (956)
++++
T Consensus 323 k~~~ 326 (327)
T cd02803 323 KARE 326 (327)
T ss_pred HHhc
Confidence 9874
No 67
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.96 E-value=6.7e-29 Score=278.80 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=189.8
Q ss_pred CccccccCCCceEEccCcC-------cCCHHHHHH-HHHcCCCcEEEeccccccccc----C------------Cchhcc
Q psy2378 2 NMINSKYNKRKISIAPMMN-------LTDRHCRMF-HRQITRYSWLYTEMFTTQAIL----G------------NKKHCL 57 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~-------~td~~fR~~-~~~~g~~~l~~tem~~~~~l~----~------------~~~~~~ 57 (956)
.|++.++ |||+++|||.. .|+..+.+. .++.||+++++||.+..+.-- + .++...
T Consensus 6 ~ig~~~l-~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~ 84 (336)
T cd02932 6 TLRGVTL-KNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVD 84 (336)
T ss_pred eECCEEE-eccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHH
Confidence 4678888 99999999953 466677765 466788999999976554321 0 011123
Q ss_pred ccCCCCCCEEEEecCC---------------------------------------C------------HHHHHHHHHHHH
Q psy2378 58 DFNAEEHPIAFQVGDN---------------------------------------E------------PKKLAKSAKIIQ 86 (956)
Q Consensus 58 ~~~~~~~p~~vQl~g~---------------------------------------~------------~~~~~~aA~~~~ 86 (956)
..|..+.++++||+.. . .++|+++|++++
T Consensus 85 ~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~ 164 (336)
T cd02932 85 FIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAV 164 (336)
T ss_pred HHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4577889999998420 0 267999999999
Q ss_pred HcCCCEEEecCCC---------CcceeeeCcccccccCChHHHHHHHHHHhhcc--CccEEEEeccC--CCCCCcHHHHH
Q psy2378 87 KWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG--IDDINSYDFVR 153 (956)
Q Consensus 87 ~~G~d~IeiN~gC---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g--~~~~~~~~~~~ 153 (956)
++|||+||||+|| |..|.|+|+||++|++|++++.||+++||+++ ++||.+|++.. .+...+.+++.
T Consensus 165 ~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~ 244 (336)
T cd02932 165 EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSV 244 (336)
T ss_pred HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHH
Confidence 9999999999986 88999999999999999999999999999999 68999999852 11222356789
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCC-CcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEE
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI-PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVM 230 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~-~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~Vm 230 (956)
++++.|++.|+|+|+||.+.. ++...... +..+++.++++++.+ ++||+++|+|.++++++++++. ||+||
T Consensus 245 ~ia~~Le~~gvd~iev~~g~~-----~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 245 ELAKALKELGVDLIDVSSGGN-----SPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred HHHHHHHHcCCCEEEECCCCC-----CcccccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 999999999999999996531 11111111 234568889999988 7999999999999999999987 99999
Q ss_pred EccccccCCcchHHHHH
Q psy2378 231 LGREAYKNPFLMSNFDL 247 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~ 247 (956)
+||++++||+|++|+..
T Consensus 319 ~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 319 LGRELLRNPYWPLHAAA 335 (336)
T ss_pred hhHHHHhCccHHHHHhh
Confidence 99999999999999864
No 68
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.96 E-value=1.2e-28 Score=273.95 Aligned_cols=241 Identities=18% Similarity=0.206 Sum_probs=190.4
Q ss_pred CccccccCCCceEEccCcC--------cCCHHHHHH-HHHcCCCcEEEeccccccccc----C----C--------chhc
Q psy2378 2 NMINSKYNKRKISIAPMMN--------LTDRHCRMF-HRQITRYSWLYTEMFTTQAIL----G----N--------KKHC 56 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~--------~td~~fR~~-~~~~g~~~l~~tem~~~~~l~----~----~--------~~~~ 56 (956)
.+++.+. +||+++|||+. .|+...++. .|+.||++|++||...++.-- + . ++-.
T Consensus 11 ~lg~~~L-~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt 89 (363)
T COG1902 11 KLGGLTL-KNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLT 89 (363)
T ss_pred eECCEEe-ccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHH
Confidence 3567787 99999999966 466788875 478888999999976444321 1 0 1113
Q ss_pred cccCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHcCCCEEEec
Q psy2378 57 LDFNAEEHPIAFQVGDNE----------------------------------------PKKLAKSAKIIQKWGYDEINLN 96 (956)
Q Consensus 57 ~~~~~~~~p~~vQl~g~~----------------------------------------~~~~~~aA~~~~~~G~d~IeiN 96 (956)
...|..+.++++||++.. .++|++||++|+++|||+||||
T Consensus 90 ~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH 169 (363)
T COG1902 90 EAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIH 169 (363)
T ss_pred HHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 345889999999997321 1679999999999999999997
Q ss_pred CC---------CCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEeccCCC---CCCcHHHHHHHHHHHHHc
Q psy2378 97 CG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHRIGID---DINSYDFVRDFVGTVSSA 162 (956)
Q Consensus 97 ~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~---~~~~~~~~~~~a~~l~~~ 162 (956)
.+ +|..|.|+|.|||+++||.+|+.||+++||++++. ||.+|+..... .+.+.++..++++.|++.
T Consensus 170 ~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~ 249 (363)
T COG1902 170 GAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEA 249 (363)
T ss_pred eccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhc
Confidence 65 99999999999999999999999999999999965 67777766321 234567899999999999
Q ss_pred C-CCEEEEcccccccccCCCCCCCCC-CcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccC
Q psy2378 163 G-CRTFIVHARNAFLKKLNPKQNRKI-PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKN 238 (956)
Q Consensus 163 G-~~~i~vh~r~~~~~g~~~~~~~~~-~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~ 238 (956)
| +|+|+++.......+ ..... +.........+++.+ ++|||++|+|++++.|+++++. ||.|.+||++|+|
T Consensus 250 G~~d~i~vs~~~~~~~~----~~~~~~~~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 250 GLVDYIHVSEGGYERGG----TITVSGPGYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred CCccEEEeecccccCCC----CccccccchhHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 9 799999876531111 11111 223446677788887 6999999999999999999998 9999999999999
Q ss_pred CcchHHHHHh
Q psy2378 239 PFLMSNFDLN 248 (956)
Q Consensus 239 P~l~~~i~~~ 248 (956)
|+|++++++.
T Consensus 325 P~~~~k~~~g 334 (363)
T COG1902 325 PDLVLKAAEG 334 (363)
T ss_pred ccHHHHHHcC
Confidence 9999999874
No 69
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=99.96 E-value=6.3e-29 Score=240.49 Aligned_cols=100 Identities=40% Similarity=0.616 Sum_probs=88.6
Q ss_pred cccCceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEEEEecCCCCHH
Q psy2378 420 AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIE 499 (956)
Q Consensus 420 ~~e~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~~gvlt~~~~~ 499 (956)
+.++++++++|||+||||+++++|+++++|||||||||||||+|+||||||+++++|||++|+++++||+|||||++|+|
T Consensus 34 ~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~~gvlt~~~~e 113 (144)
T PF00885_consen 34 VAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVIFGVLTPDTEE 113 (144)
T ss_dssp TTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSHH
T ss_pred CCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCceeEEEeccccchHH
Q psy2378 500 QANSRILTKGEIIIFINHKNKSLVN 524 (956)
Q Consensus 500 qa~~r~~~~~~~~~~~~~~~~~~~~ 524 (956)
||++|++++.+ |.|.+++..
T Consensus 114 qa~~R~~~~~~-----nkG~eaA~a 133 (144)
T PF00885_consen 114 QALERAGGKAG-----NKGREAAEA 133 (144)
T ss_dssp HHHHHCEETTE-----EHHHHHHHH
T ss_pred HHHHHhcchhh-----hhHHHHHHH
Confidence 99999997544 345444433
No 70
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.95 E-value=6.1e-28 Score=266.28 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=151.6
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~g~-~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
+.|+++|++|. ++++|+++|+.++++|+|+||||+|||.. ...+++|+.++++|+.+.+|++++++.+++||+||+|+
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~ 177 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP 177 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC
Confidence 68999999998 99999999999999999999999999997 45677899999999999999999999999999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------------ccccCCCCCCCCCCcCcHHHHHHHHHh
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------FLKKLNPKQNRKIPILKYNFVYNLKKD 201 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------------~~~g~~~~~~~~~~~~~~~~i~~v~~~ 201 (956)
+.+ +..++++.++++|+|+|+++.+.. ..+|++|+. ..|..|++++++++.
T Consensus 178 ~~~------~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a---~~p~~l~~v~~~~~~ 248 (299)
T cd02940 178 NIT------DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPA---VKPIALRAVSQIARA 248 (299)
T ss_pred Cch------hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCC---cchHHHHHHHHHHHh
Confidence 553 367899999999999999654321 133444331 223459999999998
Q ss_pred CC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHh
Q psy2378 202 FP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 248 (956)
Q Consensus 202 ~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~ 248 (956)
++ ++|||+||||.|++|+.+++.. ||+||+||+++. +|.++.++.++
T Consensus 249 ~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 249 PEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhhh
Confidence 73 6999999999999999999988 999999999888 99999998764
No 71
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.95 E-value=1e-26 Score=257.65 Aligned_cols=229 Identities=19% Similarity=0.245 Sum_probs=178.0
Q ss_pred cccccCCCceEEcc-CcCcCCHHHHHHHHHcCCCcEEEecccccccccCC----------------------chhcc---
Q psy2378 4 INSKYNKRKISIAP-MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN----------------------KKHCL--- 57 (956)
Q Consensus 4 ~~~~~~~~~i~lAP-M~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~----------------------~~~~~--- 57 (956)
....| +||+++|. +.+.+....|. +...| +|.++|--++.+.-.++ ...++
T Consensus 7 ~G~~~-~nPv~~aag~~~~~~~~~~~-~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~ 83 (301)
T PRK07259 7 PGLKL-KNPVMPASGTFGFGGEYARF-YDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEE 83 (301)
T ss_pred CCEEC-CCCcEECCcCCCCCHHHHHH-hhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHH
Confidence 45678 99999987 66666644443 34455 57777765543322110 01111
Q ss_pred -c-cCCCCCCEEEEecCCCHHHHHHHHHHHHHcC-CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCcc
Q psy2378 58 -D-FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 134 (956)
Q Consensus 58 -~-~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G-~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 134 (956)
. ....+.|+++||+|+++++|+++|++++++| +|+||||++||... .+ |..+.++++++.+++++||+.+++|
T Consensus 84 ~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g-g~~~~~~~~~~~eiv~~vr~~~~~p 159 (301)
T PRK07259 84 LPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG-GMAFGTDPELAYEVVKAVKEVVKVP 159 (301)
T ss_pred HHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC-ccccccCHHHHHHHHHHHHHhcCCC
Confidence 1 1223689999999999999999999999999 99999999999742 22 7788999999999999999999999
Q ss_pred EEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc---------------cccCCCCCCCCCCcCcHHHHHHHH
Q psy2378 135 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNLK 199 (956)
Q Consensus 135 v~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~---------------~~g~~~~~~~~~~~~~~~~i~~v~ 199 (956)
|+||++...+ +..++++.++++|+|+|+++.++.. ..|++| ....|..++++++++
T Consensus 160 v~vKl~~~~~------~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~p~~l~~v~~i~ 230 (301)
T PRK07259 160 VIVKLTPNVT------DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG---PAIKPIALRMVYQVY 230 (301)
T ss_pred EEEEcCCCch------hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCC---cCcccccHHHHHHHH
Confidence 9999997443 3678999999999999998654311 112222 223456899999999
Q ss_pred HhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 200 KDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 200 ~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
+.+ ++|||++|||.|++|+.+++.. ||+||+||+++.||++++++++.+
T Consensus 231 ~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 231 QAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred HhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 988 7999999999999999999988 999999999999999999998765
No 72
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=99.95 E-value=3.1e-28 Score=232.45 Aligned_cols=97 Identities=20% Similarity=0.358 Sum_probs=87.2
Q ss_pred CceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEEEEecCCCCHHHHH
Q psy2378 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQAN 502 (956)
Q Consensus 423 ~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~~gvlt~~~~~qa~ 502 (956)
.++.+++|||+||||+++++|+++++|||||||||||||+|+||||| ++++|||++++++++||+| |||++|+|||+
T Consensus 29 ~~i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V--~vs~GL~~lsl~~~~PVi~-VlT~e~eeQA~ 105 (151)
T TIGR01506 29 IKIIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYH--EASTGLIQVQLMTNKHVID-VTVHEDEAEDP 105 (151)
T ss_pred CeEEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHH--HHHHHHHHHHhhhCCCEEE-EEeeCCHHHHH
Confidence 35899999999999999999999999999999999999999999999 9999999999999999999 99999999999
Q ss_pred hhhcccCceeEEEeccccchHHHHh
Q psy2378 503 SRILTKGEIIIFINHKNKSLVNLIK 527 (956)
Q Consensus 503 ~r~~~~~~~~~~~~~~~~~~~~~~~ 527 (956)
+|++.+.. |.|.+++.+.+.
T Consensus 106 ~Rag~~~~-----nkG~eaA~aale 125 (151)
T TIGR01506 106 EELKVLAD-----NRAREHAQNLIM 125 (151)
T ss_pred HHhccccc-----ChHHHHHHHHHH
Confidence 99987654 345555544443
No 73
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.95 E-value=1.4e-27 Score=267.97 Aligned_cols=244 Identities=18% Similarity=0.211 Sum_probs=178.3
Q ss_pred CccccccCCCceEEccCcC--------cCC-HHHHHH-HHHcCCCcEEEeccccccccc----C----C--------chh
Q psy2378 2 NMINSKYNKRKISIAPMMN--------LTD-RHCRMF-HRQITRYSWLYTEMFTTQAIL----G----N--------KKH 55 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~--------~td-~~fR~~-~~~~g~~~l~~tem~~~~~l~----~----~--------~~~ 55 (956)
.|++.++ ||||++|||.. +++ ...++. .|+.||+++++||.+.++.-. + . ++.
T Consensus 7 ~ig~~~l-kNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l 85 (341)
T PF00724_consen 7 KIGNLTL-KNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKL 85 (341)
T ss_dssp EETTEEE-SSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHH
T ss_pred eECCEEe-cCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHH
Confidence 4788888 99999999964 333 555554 478888999999987665432 1 1 111
Q ss_pred ccccCCCCCCEEEEecCC----------------C---------------------------HHHHHHHHHHHHHcCCCE
Q psy2378 56 CLDFNAEEHPIAFQVGDN----------------E---------------------------PKKLAKSAKIIQKWGYDE 92 (956)
Q Consensus 56 ~~~~~~~~~p~~vQl~g~----------------~---------------------------~~~~~~aA~~~~~~G~d~ 92 (956)
...+|..+.++++||+.. . .++|++||++|+++|||+
T Consensus 86 ~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDG 165 (341)
T PF00724_consen 86 ADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDG 165 (341)
T ss_dssp HHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 234578899999999631 0 267999999999999999
Q ss_pred EEecCC---------CCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccCC--CCCCcHHHHHHHHHHH
Q psy2378 93 INLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGI--DDINSYDFVRDFVGTV 159 (956)
Q Consensus 93 IeiN~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~--~~~~~~~~~~~~a~~l 159 (956)
||||++ +|..|.|+|.|||++.||.+|+.||+++||++++ .||.+|+.... +...+.++..++++.+
T Consensus 166 VEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~ 245 (341)
T PF00724_consen 166 VEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLL 245 (341)
T ss_dssp EEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHH
T ss_pred EeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHH
Confidence 999986 8999999999999999999999999999999984 66777776632 2222346678889999
Q ss_pred HHcCCCEEEEccccccccc--CCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcccc
Q psy2378 160 SSAGCRTFIVHARNAFLKK--LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA 235 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g--~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~ 235 (956)
++.|+|.++++........ ..............+.+..+++.+ ++|||++|+|.+++.++++++. ||+|++||++
T Consensus 246 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ 324 (341)
T PF00724_consen 246 EELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPL 324 (341)
T ss_dssp HHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHH
T ss_pred HHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-CceEEEEeeecchhhhHHHHhcCCceEeeccHHH
Confidence 9999999987643321111 000111111223457788899887 8999999999999999999987 9999999999
Q ss_pred ccCCcchHHHHH
Q psy2378 236 YKNPFLMSNFDL 247 (956)
Q Consensus 236 l~~P~l~~~i~~ 247 (956)
++||+|++|+++
T Consensus 325 ladPd~~~k~~~ 336 (341)
T PF00724_consen 325 LADPDLPNKARE 336 (341)
T ss_dssp HH-TTHHHHHHH
T ss_pred HhCchHHHHHHc
Confidence 999999999987
No 74
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.94 E-value=9.8e-27 Score=287.53 Aligned_cols=243 Identities=16% Similarity=0.197 Sum_probs=188.3
Q ss_pred CCccccccCCCceEEccCcC-------cCCHHHHHH-HHHcCCCcEEEeccccccccc-------C-Cc--------hhc
Q psy2378 1 MNMINSKYNKRKISIAPMMN-------LTDRHCRMF-HRQITRYSWLYTEMFTTQAIL-------G-NK--------KHC 56 (956)
Q Consensus 1 ~~~~~~~~~~~~i~lAPM~~-------~td~~fR~~-~~~~g~~~l~~tem~~~~~l~-------~-~~--------~~~ 56 (956)
+.|++.++ |||++++||+. +|+....++ .++.||++|++||.+.+..-- + .. +..
T Consensus 403 ~~i~~~~l-~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~ 481 (765)
T PRK08255 403 FRLRGLTL-KNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIV 481 (765)
T ss_pred cccCCEee-CCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHH
Confidence 35677788 99999999954 466677664 467788999999986554321 0 01 112
Q ss_pred cccCCC-CCCEEEEecC--C-----------------------------------C------------HHHHHHHHHHHH
Q psy2378 57 LDFNAE-EHPIAFQVGD--N-----------------------------------E------------PKKLAKSAKIIQ 86 (956)
Q Consensus 57 ~~~~~~-~~p~~vQl~g--~-----------------------------------~------------~~~~~~aA~~~~ 86 (956)
...|.. +.++++||+. . . .++|++||++++
T Consensus 482 ~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~ 561 (765)
T PRK08255 482 DFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAA 561 (765)
T ss_pred HHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 234777 5899999842 0 0 267999999999
Q ss_pred HcCCCEEEecCC---------CCcceeeeCcccccccCChHHHHHHHHHHhhcc--CccEEEEecc-CCCC-CCcHHHHH
Q psy2378 87 KWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI-GIDD-INSYDFVR 153 (956)
Q Consensus 87 ~~G~d~IeiN~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~-g~~~-~~~~~~~~ 153 (956)
++|||+||||+| ||..|.|+|+|||+|+||.+++.||+++||+++ ++||++||+. +|.+ ..+.++++
T Consensus 562 ~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~ 641 (765)
T PRK08255 562 EAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAV 641 (765)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHH
Confidence 999999999999 999999999999999999999999999999998 4799999997 3433 33557789
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEE
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVML 231 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~Vmi 231 (956)
++++.|+++|+|+|+||++...... ...+.+.....+..++|+.+ ++|||+||+|+++++++++++. ||+||+
T Consensus 642 ~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~~~~~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 642 EIARAFKAAGADLIDVSSGQVSKDE----KPVYGRMYQTPFADRIRNEA-GIATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred HHHHHHHhcCCcEEEeCCCCCCcCC----CCCcCccccHHHHHHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 9999999999999999954311100 00111123346778899988 7999999999999999999987 999999
Q ss_pred ccccccCCcchHHHHHhh
Q psy2378 232 GREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 232 GR~~l~~P~l~~~i~~~~ 249 (956)
||++++||+|+.+....+
T Consensus 717 gR~~l~dP~~~~~~~~~~ 734 (765)
T PRK08255 717 ARPHLADPAWTLHEAAEI 734 (765)
T ss_pred cHHHHhCccHHHHHHHHc
Confidence 999999996665555444
No 75
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.94 E-value=3e-26 Score=252.84 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=181.1
Q ss_pred ccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCC------------------------------
Q psy2378 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN------------------------------ 52 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~------------------------------ 52 (956)
+...+| +||+++|--..-++..+-+.+...| +|.++|--++.+...++
T Consensus 3 ~~G~~~-~nPv~~aag~~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~ 80 (289)
T cd02810 3 FLGLKL-KNPFGVAAGPLLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred ECCEEC-CCCCEeCCCCCCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCc
Confidence 445788 9999999887755655555445555 57777765544433210
Q ss_pred -c----hhccccCC--CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHH
Q psy2378 53 -K----KHCLDFNA--EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125 (956)
Q Consensus 53 -~----~~~~~~~~--~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~ 125 (956)
. +++..... .+.|+++||+|++++++.++|+.+.++|+|+||||++||..+. |..++++++++.++++
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLK 155 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHH
Confidence 0 01111112 4789999999999999999999999999999999999997542 4458899999999999
Q ss_pred HHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccc------------cCCCCCCCCCCcCcHH
Q psy2378 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK------------KLNPKQNRKIPILKYN 193 (956)
Q Consensus 126 ~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~------------g~~~~~~~~~~~~~~~ 193 (956)
++|+.+++||+||++.+++. ++..++++.++++|+|+|++|+++.... +..+.......+..|+
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~----~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~ 231 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDL----EDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALR 231 (289)
T ss_pred HHHHccCCCEEEEeCCCCCH----HHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHH
Confidence 99999999999999997653 3578999999999999999998752100 0001111112234688
Q ss_pred HHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC-CcchHHHHH
Q psy2378 194 FVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDL 247 (956)
Q Consensus 194 ~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~-P~l~~~i~~ 247 (956)
+++++++.++ ++|||++|||.|++|+.++++. ||+||+||+++.| ||+++++++
T Consensus 232 ~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~~ 288 (289)
T cd02810 232 WVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHhc
Confidence 9999999885 7999999999999999999988 9999999999999 999999875
No 76
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.94 E-value=2.5e-26 Score=258.52 Aligned_cols=232 Identities=17% Similarity=0.206 Sum_probs=182.4
Q ss_pred CccccccCCCceEEccCcC---------cCCHHHHHHHHHcCCCcEEEeccccccccc----CC------------chhc
Q psy2378 2 NMINSKYNKRKISIAPMMN---------LTDRHCRMFHRQITRYSWLYTEMFTTQAIL----GN------------KKHC 56 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~---------~td~~fR~~~~~~g~~~l~~tem~~~~~l~----~~------------~~~~ 56 (956)
.|++.++ |||+++|||.. .|+..+++..++.| ++|++||.+.++.-- +. ++..
T Consensus 8 ~ig~~~l-kNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg-~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~la 85 (362)
T PRK10605 8 KVGAITA-PNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRAS-AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKIT 85 (362)
T ss_pred eECCEEe-ccccEECCcCcCccCCCCCCCCHHHHHHHHHHhC-CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHH
Confidence 4677788 99999999964 25567777666655 799999987654331 10 1112
Q ss_pred cccCCCCCCEEEEecCC------------------------------------------C------------HHHHHHHH
Q psy2378 57 LDFNAEEHPIAFQVGDN------------------------------------------E------------PKKLAKSA 82 (956)
Q Consensus 57 ~~~~~~~~p~~vQl~g~------------------------------------------~------------~~~~~~aA 82 (956)
...|..+.++++||+.. . .++|++||
T Consensus 86 d~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 165 (362)
T PRK10605 86 AGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAI 165 (362)
T ss_pred HHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence 34578899999998521 0 15799999
Q ss_pred HHHHHcCCCEEEecCC---------CCcceeeeCcccccccCChHHHHHHHHHHhhccCc-cEEEEeccC-----CCCCC
Q psy2378 83 KIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIG-----IDDIN 147 (956)
Q Consensus 83 ~~~~~~G~d~IeiN~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g-----~~~~~ 147 (956)
++|+++|||+||||++ +|..|.|+|.|||++.||.+|+.|||++||++++. .|.+|+... .+.+.
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~ 245 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGP 245 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCC
Confidence 9999999999999876 89999999999999999999999999999999953 466666542 12234
Q ss_pred cHHH-HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-
Q psy2378 148 SYDF-VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY- 225 (956)
Q Consensus 148 ~~~~-~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~- 225 (956)
+.++ +.++++.|++.|+|+|+|+.... .+ . .+....+.+++|+.+ ++||+++|++ |++.++++++.
T Consensus 246 ~~~e~~~~~~~~L~~~giD~i~vs~~~~--~~---~-----~~~~~~~~~~ik~~~-~~pv~~~G~~-~~~~ae~~i~~G 313 (362)
T PRK10605 246 NEEADALYLIEQLGKRGIAYLHMSEPDW--AG---G-----EPYSDAFREKVRARF-HGVIIGAGAY-TAEKAETLIGKG 313 (362)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeccccc--cC---C-----ccccHHHHHHHHHHC-CCCEEEeCCC-CHHHHHHHHHcC
Confidence 5566 79999999999999999986431 11 0 122345678899888 6999999996 89999999987
Q ss_pred -cCEEEEccccccCCcchHHHHH
Q psy2378 226 -IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 226 -ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
||+|++||++++||+|++|+++
T Consensus 314 ~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 314 LIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred CCCEEEECHHhhhCccHHHHHhc
Confidence 9999999999999999999987
No 77
>PLN02411 12-oxophytodienoate reductase
Probab=99.94 E-value=4e-26 Score=259.11 Aligned_cols=240 Identities=15% Similarity=0.173 Sum_probs=179.8
Q ss_pred CccccccCCCceEEccCcC-------cCCHHHHHHH-HHcCCCcEEEeccccccccc----C----C--------chhcc
Q psy2378 2 NMINSKYNKRKISIAPMMN-------LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----G----N--------KKHCL 57 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~-------~td~~fR~~~-~~~g~~~l~~tem~~~~~l~----~----~--------~~~~~ 57 (956)
.|++.+. ||||++|||.. +|+....+.. |+.|| +|++||.+.++.-- + . ++...
T Consensus 17 ~ig~~~l-kNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~ 94 (391)
T PLN02411 17 KMGRFDL-SHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVD 94 (391)
T ss_pred eECCEEE-cccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHH
Confidence 4677788 99999999954 4677777754 55677 99999986554321 1 0 11123
Q ss_pred ccCCCCCCEEEEecC--C--------------------------------------C------------HHHHHHHHHHH
Q psy2378 58 DFNAEEHPIAFQVGD--N--------------------------------------E------------PKKLAKSAKII 85 (956)
Q Consensus 58 ~~~~~~~p~~vQl~g--~--------------------------------------~------------~~~~~~aA~~~ 85 (956)
.+|..+.++++||+. . . .++|++||++|
T Consensus 95 avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA 174 (391)
T PLN02411 95 AVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNA 174 (391)
T ss_pred HHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 457888899999841 0 1 15799999999
Q ss_pred HHcCCCEEEecCC---------CCcceeeeCcccccccCChHHHHHHHHHHhhccCc-cEEEEeccCC-----CCCCcHH
Q psy2378 86 QKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGI-----DDINSYD 150 (956)
Q Consensus 86 ~~~G~d~IeiN~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g~-----~~~~~~~ 150 (956)
+++|||+||||++ +|..|.|+|+|||++.||.+|+.||+++||++++. .|.+|+.... ++.+..+
T Consensus 175 ~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~ 254 (391)
T PLN02411 175 IRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLN 254 (391)
T ss_pred HHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchh
Confidence 9999999999876 89999999999999999999999999999999963 4777776421 1233345
Q ss_pred HHHHHHHHHHHc------CCCEEEEcccccccccCCCCC-CCCCCcCcH-HHHHHHHHhCCCceEEEecCCCCHHHHHHH
Q psy2378 151 FVRDFVGTVSSA------GCRTFIVHARNAFLKKLNPKQ-NRKIPILKY-NFVYNLKKDFPELEIIINGGIKTKKEIDLH 222 (956)
Q Consensus 151 ~~~~~a~~l~~~------G~~~i~vh~r~~~~~g~~~~~-~~~~~~~~~-~~i~~v~~~~~~ipVi~nGgI~s~~da~~~ 222 (956)
+..++++.|++. |+|+|+|+.... ..+.... ....+...+ .+.+++|+.+ ++|||++|+| ++++++++
T Consensus 255 ~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~--~~~~~~~~~~~~~~~~~~~~a~~ik~~v-~~pvi~~G~i-~~~~a~~~ 330 (391)
T PLN02411 255 LGLAVVERLNKLQLQNGSKLAYLHVTQPRY--TAYGQTESGRHGSEEEEAQLMRTLRRAY-QGTFMCSGGF-TRELGMQA 330 (391)
T ss_pred hHHHHHHHHHHHHhhcCCCeEEEEecCCcc--cccCCCcccccCCccchhHHHHHHHHHc-CCCEEEECCC-CHHHHHHH
Confidence 677888888874 599999987542 1111000 011111122 4668899988 7999999999 67999999
Q ss_pred hhh--cCEEEEccccccCCcchHHHHH
Q psy2378 223 LNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 223 l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
++. ||+|.+||++|+||+|++++++
T Consensus 331 l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 331 VQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred HHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 987 9999999999999999999986
No 78
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.93 E-value=3.7e-25 Score=243.92 Aligned_cols=193 Identities=14% Similarity=0.081 Sum_probs=154.6
Q ss_pred eeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCceeEEE
Q psy2378 630 INEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLE 708 (956)
Q Consensus 630 ~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~eitle 708 (956)
-|.||...+...... ..+....|.++|......+.......+||+||||+.++.+.+.++++.+.+. +...+++++
T Consensus 39 gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~l~~~i~~~---~~~~~isi~ 115 (302)
T TIGR01212 39 GCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKEMYEQALSY---DDVVGLSVG 115 (302)
T ss_pred CcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHHHHHHHhCC---CCEEEEEEE
Confidence 699998654221110 0011222333333332222222345699999999999999999999999763 455789999
Q ss_pred eCCCCCCHHHHHHHH---HcCC-CeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHHHH
Q psy2378 709 ANPSTFEIEKFHSYS---IIGI-NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL 784 (956)
Q Consensus 709 ~np~~it~e~L~~L~---~~Gv-~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e~~ 784 (956)
++|+.++++.++.|+ ++|+ .+|++|+||+++++|+.|+|+|+.+++.++++.++++|+.+++|+|+|+||||.+++
T Consensus 116 trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~ 195 (302)
T TIGR01212 116 TRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEM 195 (302)
T ss_pred ecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHH
Confidence 999999998777666 4699 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHH
Q psy2378 785 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDE 825 (956)
Q Consensus 785 ~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~ 825 (956)
.+|++++.+++|+++++|+|+|.|||++++. +.+..++.++
T Consensus 196 ~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e 239 (302)
T TIGR01212 196 METAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEE 239 (302)
T ss_pred HHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHH
Confidence 9999999999999999999999999999775 4566666655
No 79
>KOG1284|consensus
Probab=99.93 E-value=5.2e-27 Score=245.64 Aligned_cols=165 Identities=38% Similarity=0.621 Sum_probs=152.7
Q ss_pred HhhhhcccccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccc--cCCCCCCCcceEEEeccCCCcccCCh
Q psy2378 269 SENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK--KNNSSFGTNFTVSIEAANGVTTGISA 346 (956)
Q Consensus 269 ~~~~e~egdlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~--~n~~~~~~~~~~~~~~~~~~~tgis~ 346 (956)
-+.++||++++..+...+++.+.|..+++.|.+|+.|..+...+|.+++|+. .+.+.++++||+++|++.|+.||||+
T Consensus 84 d~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsa 163 (357)
T KOG1284|consen 84 DEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSA 163 (357)
T ss_pred cccccCCCCcceecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEE
Confidence 3669999999999999999999999999999999999999999999999998 46778999999999999999999999
Q ss_pred hhhhHHHHHhhc-CCCCCCCccCCCccceeeec-cCcccccCChhhHHHHHHHHcCCCcchhhhhcccc-ccccccc---
Q psy2378 347 SDRAHTIKVASS-KKAKPSDIVQPGHIFPLQAK-KGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMARA--- 420 (956)
Q Consensus 347 ~dra~t~~~~~~-~~~~~~~~~~pghv~pl~~~-~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~-~g~~~~~--- 420 (956)
.||+.|++.+++ ..+.|+||.+|||++|++++ +|||++|.|||||+||||.++|+.|++++||++++ +|.|++.
T Consensus 164 hde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~ 243 (357)
T KOG1284|consen 164 HDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDC 243 (357)
T ss_pred ecccccchhhcccccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccH
Confidence 999999999999 67999999999999999999 69999999999999999999999999999999998 8999875
Q ss_pred ----ccCceEEEEcCCc
Q psy2378 421 ----QEKNILHISVPGA 433 (956)
Q Consensus 421 ----~e~~i~~~~vpg~ 433 (956)
.++++.++++.+.
T Consensus 244 r~fa~~~~i~~~~i~dl 260 (357)
T KOG1284|consen 244 RSFAAEHAIPLISIEDL 260 (357)
T ss_pred hhhhHhhcCChhhhhhH
Confidence 4566777666654
No 80
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.93 E-value=1.9e-25 Score=258.49 Aligned_cols=176 Identities=17% Similarity=0.227 Sum_probs=151.6
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~g~-~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
+.|+++||+|+ ++++|+++|+.++++|+|+||||+|||. .+..+++|+.++++|+.+.+|++++++.+++||+||+++
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p 177 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP 177 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC
Confidence 57899999999 9999999999999999999999999998 355567899999999999999999999999999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEc---------------------ccccccccCCCCCCCCCCcCcHHHHHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVH---------------------ARNAFLKKLNPKQNRKIPILKYNFVYNLKK 200 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh---------------------~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~ 200 (956)
..++ ..++++.++++|+|+|++. +|+ ..+|++|+ ...|..|++++++++
T Consensus 178 ~~~~------~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~-~~gg~SG~---a~~p~~l~~v~~~~~ 247 (420)
T PRK08318 178 NITD------IREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKS-SHGGYCGP---AVKPIALNMVAEIAR 247 (420)
T ss_pred Cccc------HHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCC-Ccccccch---hhhHHHHHHHHHHHh
Confidence 5443 5689999999999999942 232 13344443 223457999999999
Q ss_pred hC--CCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHhh
Q psy2378 201 DF--PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 249 (956)
Q Consensus 201 ~~--~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~~ 249 (956)
.+ +++|||+||||.|++|+.+++.. ||+|||||+++. +|+++.++.+++
T Consensus 248 ~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 248 DPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred ccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHH
Confidence 86 27999999999999999999988 999999999988 899999998765
No 81
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.92 E-value=1.9e-24 Score=237.41 Aligned_cols=234 Identities=14% Similarity=0.054 Sum_probs=172.9
Q ss_pred ccccccCCCceEEccCc-CcCCHHHHHHHHHcCCCcEEEeccccccccc------------------C----Cch----h
Q psy2378 3 MINSKYNKRKISIAPMM-NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL------------------G----NKK----H 55 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~-~~td~~fR~~~~~~g~~~l~~tem~~~~~l~------------------~----~~~----~ 55 (956)
+...+| +||+++|.=. +-+-...+.+.. .| ++.++|--+..+... + ..+ +
T Consensus 3 ~~Gl~l-~nPi~~Asg~~~~~~e~~~~~~~-~G-~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~ 79 (294)
T cd04741 3 PPGLTI-SPPLMNAAGPWCTTLEDLLELAA-SS-TGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEY 79 (294)
T ss_pred cCCeeC-CCCCEECCCCCCCCHHHHHHHHH-cC-CcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHH
Confidence 345678 9999988654 344456666554 44 566766544333221 0 001 1
Q ss_pred cccc----CCCCCCEEEEecCCCHHHHHHHHHHHHHc---CCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHh
Q psy2378 56 CLDF----NAEEHPIAFQVGDNEPKKLAKSAKIIQKW---GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128 (956)
Q Consensus 56 ~~~~----~~~~~p~~vQl~g~~~~~~~~aA~~~~~~---G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 128 (956)
+... +..+.|+++||+|+ +++|.++++.+.+. |+|+||||+|||... + +..+..+|+.+.+|+++|+
T Consensus 80 i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~-~~~~~~~~~~~~~i~~~v~ 153 (294)
T cd04741 80 IRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----G-KPPPAYDFDATLEYLTAVK 153 (294)
T ss_pred HHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----C-cccccCCHHHHHHHHHHHH
Confidence 1111 12468999999999 99999999988875 699999999999741 2 3357789999999999999
Q ss_pred hccCccEEEEeccCCCCCCcHHHHHHHHHHHHHc--CCCEEEE----------cc-ccc-c---cccCCCCCCCCCCcCc
Q psy2378 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA--GCRTFIV----------HA-RNA-F---LKKLNPKQNRKIPILK 191 (956)
Q Consensus 129 ~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~--G~~~i~v----------h~-r~~-~---~~g~~~~~~~~~~~~~ 191 (956)
+.+++||+||+|++++. .++.++++.+.++ |+|+|++ |. |+. . .+++.|.......+..
T Consensus 154 ~~~~iPv~vKl~p~~~~----~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~a 229 (294)
T cd04741 154 AAYSIPVGVKTPPYTDP----AQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLA 229 (294)
T ss_pred HhcCCCEEEEeCCCCCH----HHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHH
Confidence 99999999999998753 2467889999998 9999995 43 221 0 1222233333334556
Q ss_pred HHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHhh
Q psy2378 192 YNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 249 (956)
Q Consensus 192 ~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~~ 249 (956)
+.+++++++.++ ++|||+||||.|++|+.+++.. ||+||+||+++. +||+|+++.+++
T Consensus 230 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 290 (294)
T cd04741 230 LGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKEL 290 (294)
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHH
Confidence 788899988885 5999999999999999999988 999999999995 999999998765
No 82
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.92 E-value=2.2e-24 Score=250.34 Aligned_cols=170 Identities=16% Similarity=0.262 Sum_probs=148.1
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHHHHHHHccc----------------------CCCceeEEEeCCCCCCHHHHHHHHH
Q psy2378 667 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF----------------------KKNISITLEANPSTFEIEKFHSYSI 724 (956)
Q Consensus 667 ~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~----------------------~~~~eitle~np~~it~e~L~~L~~ 724 (956)
+++ +.|.||||+.++.++..+++..+.+.++- .....+|+|++|+.++++.++.|++
T Consensus 136 kvE-~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~ 214 (522)
T TIGR01211 136 KVE-LIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLK 214 (522)
T ss_pred eEE-EEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 344 46889999999999999999999887643 1236899999999999999999999
Q ss_pred cCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHHHHHHHHHHHHc---cCCCeEEE
Q psy2378 725 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQ---YSPPHLSL 801 (956)
Q Consensus 725 ~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~---l~~~~i~~ 801 (956)
+|++||++||||+||++|+.+||+|+.+++.+++++++++|+.+++|||+||||||.+++.+|++.+.+ ++|+++++
T Consensus 215 ~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Iki 294 (522)
T TIGR01211 215 LGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKI 294 (522)
T ss_pred cCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEE
Confidence 999999999999999999999999999999999999999988999999999999999999999999985 99999999
Q ss_pred EeeeccCCcccccC---CCCCCCCHHHHHHHHHHHHHHH
Q psy2378 802 YSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 802 y~l~~~pgT~l~~~---~~~~~~~~~~~~~~~~~~~~~l 837 (956)
|++.+.|||+|+++ +++..++.++..+++..+...+
T Consensus 295 ypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~l 333 (522)
T TIGR01211 295 YPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMM 333 (522)
T ss_pred ecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999763 4555566655555555444444
No 83
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.92 E-value=7.3e-25 Score=258.26 Aligned_cols=223 Identities=13% Similarity=0.131 Sum_probs=185.0
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCc
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNI 703 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~ 703 (956)
.-.||+.|+||.....+ +..+.+.++.|++||+...+.. .+..++|.|++|+ ++.+++.++++.+.+.-+ ...
T Consensus 200 SRGCp~~C~FC~~~~~~-~~~R~rs~e~Vv~Ei~~l~~~~---gv~~~~~~Dd~f~-~~~~~~~~l~~~l~~~~~--l~i 272 (497)
T TIGR02026 200 ARGCPFTCNFCSQWKFW-RRYRHRDPKKFVDEIEWLVRTH---GVGFFILADEEPT-INRKKFQEFCEEIIARNP--ISV 272 (497)
T ss_pred cCCCCCCCCCCCCCCCC-ceeecCCHHHHHHHHHHHHHHc---CCCEEEEEecccc-cCHHHHHHHHHHHHhcCC--CCe
Confidence 35778899999876653 4556677899999998765432 4678999999976 467788889988876521 234
Q ss_pred eeEEEeCCCCC--CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 704 SITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 704 eitle~np~~i--t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
.|.++++++.+ ++++++.|+++||+++++|+||+++++|+.|+|+++.+++.++++.++++|+.+++++|+|+||||.
T Consensus 273 ~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~ 352 (497)
T TIGR02026 273 TWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETD 352 (497)
T ss_pred EEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCH
Confidence 67778888766 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCC
Q psy2378 782 SELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGY 855 (956)
Q Consensus 782 e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~ 855 (956)
+++++|++++.+++|++++++.++|+|||++++........ ..++.|......+...++.+||++++.+.-|
T Consensus 353 e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~~--~d~~~y~~~~~~~~~~~m~~~El~~~~~~~~ 424 (497)
T TIGR02026 353 ETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVEV--QDYTKYNFVTPIMKPTHMPRWEILLGVKLNY 424 (497)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhccc--CchhhccccceEeeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998752111111 1355777777888889999999999876533
No 84
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=1.7e-23 Score=243.56 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=154.0
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCH-------HHHHHHHHHHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD-------TGLDYLLKNIKKL 696 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~-------~~l~~ll~~i~~~ 696 (956)
...||+.|+||..+..+|.. +.+.++.|++|++.+.+ ..++.+.|.|.+.+.... ..+..+++.+.+.
T Consensus 159 ~rGC~~~CsfC~~p~~rG~~-rsr~~e~Vv~Ei~~l~~----~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~ 233 (455)
T PRK14335 159 MNGCNNFCSYCIVPYVRGRE-ISRDLDAILQEIDVLSE----KGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRR 233 (455)
T ss_pred hcCCCCCCCCCCcccCCCCC-ccCCHHHHHHHHHHHHH----CCCeEEEEEeecccccccccccCCccCHHHHHHHHHHh
Confidence 46899999999988766654 45779999999987654 246778887766543311 1356666666432
Q ss_pred ccc-CCCceeE-EEeCCCCCCHHHHHHHHH--cCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEE
Q psy2378 697 LLF-KKNISIT-LEANPSTFEIEKFHSYSI--IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNL 770 (956)
Q Consensus 697 ~~~-~~~~eit-le~np~~it~e~L~~L~~--~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~ 770 (956)
... .....++ ..++|..+++++++.|++ .||++++||+||+|+++|+.|||+++.+++.++++.+++. ++.+++
T Consensus 234 ~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~ 313 (455)
T PRK14335 234 AEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALST 313 (455)
T ss_pred hcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 211 1122343 346899999999999998 4899999999999999999999999999999999999997 889999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 771 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 771 dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
|||+|+||||+++|++|++++.+++++++++|.|+|+|||+++++.
T Consensus 314 d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~ 359 (455)
T PRK14335 314 DILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFP 359 (455)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCC
Confidence 9999999999999999999999999999999999999999999875
No 85
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.91 E-value=1.1e-23 Score=243.74 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=154.4
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC-----HHHHHHHHHHHHHHc
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLDYLLKNIKKLL 697 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~-----~~~l~~ll~~i~~~~ 697 (956)
-...||+.|+||..+..++ ..+.+.++.|++|++...+. .++.+.|.|.+.+... ..++..|++.+.+.
T Consensus 144 isrGCp~~CsfC~~~~~~g-~~r~r~~e~I~~Ei~~l~~~----g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~- 217 (414)
T TIGR01579 144 VQDGCNFFCSYCIIPFARG-RSRSVPMEAILKQVKILVAK----GYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI- 217 (414)
T ss_pred eccCcCCCCCCCceeeecC-CCccCCHHHHHHHHHHHHHC----CCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC-
Confidence 3568888999999877666 45667789999999876542 4677777665444332 23567777777643
Q ss_pred ccCCCceeEE-EeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh--cCCeeEEEE
Q psy2378 698 LFKKNISITL-EANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ--YFNNFNLDL 772 (956)
Q Consensus 698 ~~~~~~eitl-e~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~--~~~~i~~dl 772 (956)
.....+++ .++|+.++++++++|+++| |.++++|+||+|+++|+.|+|+++.+++.++++.+++ .++.+++||
T Consensus 218 --~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~ 295 (414)
T TIGR01579 218 --PGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDI 295 (414)
T ss_pred --CCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeE
Confidence 22223333 3589999999999999887 8999999999999999999999999999999999999 689999999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
|+|+||||+++|++|++++.+++++++++|+|+|+||||++++.
T Consensus 296 IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~ 339 (414)
T TIGR01579 296 IVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMK 339 (414)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCC
Confidence 99999999999999999999999999999999999999999875
No 86
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.1e-23 Score=241.60 Aligned_cols=187 Identities=11% Similarity=0.075 Sum_probs=153.6
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHH--HHHHHHHHHHHHccc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDT--GLDYLLKNIKKLLLF 699 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~--~l~~ll~~i~~~~~~ 699 (956)
.-...||+.|+||..+...|+. +.+.++.+++|++...+ ..++.+.|.|.+.+....+ .+..+++.+.+ .
T Consensus 159 ~isrGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~---~ 230 (449)
T PRK14332 159 TIMRGCNNFCTFCVVPYTRGRE-RSRDPKSIVREIQDLQE----KGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLD---E 230 (449)
T ss_pred EecCCcCCCCCCCCcccccCCc-ccCCHHHHHHHHHHHHH----CCCeEEEEecccCCcccCCcccHHHHHHHHhc---C
Confidence 3357999999999988765544 66779999999988754 2478888887776654332 24445544433 2
Q ss_pred CCCceeEEE-eCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEEee
Q psy2378 700 KKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIY 774 (956)
Q Consensus 700 ~~~~eitle-~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dlI~ 774 (956)
.....+.+. .+|..+++++++.|+++| |+++++|+||+||++|+.|+|+++.+++.++++.+++. ++.+.+|||+
T Consensus 231 ~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~Iv 310 (449)
T PRK14332 231 TTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIV 310 (449)
T ss_pred CCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 222344443 389999999999999988 99999999999999999999999999999999999997 5678899999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccc-cCC
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF-KYP 816 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~-~~~ 816 (956)
|+||||+++|++|++++.+++++++++|.|+|+|||+.+ ++.
T Consensus 311 GfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~ 353 (449)
T PRK14332 311 GFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLP 353 (449)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCc
Confidence 999999999999999999999999999999999999998 453
No 87
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.4e-23 Score=242.58 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=154.1
Q ss_pred cCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC------HHHHHHHHHHHH
Q psy2378 621 HYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS------DTGLDYLLKNIK 694 (956)
Q Consensus 621 ~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~------~~~l~~ll~~i~ 694 (956)
+.-...|++.|+||..+..+|+. +.+.++.+++|++.+.+. .++.|.|.|.+.+... ...+..|++.+.
T Consensus 216 v~I~~GC~~~CsFC~vp~~rG~~-Rsr~~e~Ii~Ei~~l~~~----G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 216 VNIMYGCDKFCTYCIVPYTRGKE-RSRRPEDIIQEVRHLARQ----GYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred EEecCCCCCCCcCCcccccCCCC-eeCCHHHHHHHHHHHHHC----CCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 34456899999999987766544 556689999999886542 3566777665544321 234677788776
Q ss_pred HHcccCCCceeEEE-eCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeE
Q psy2378 695 KLLLFKKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFN 769 (956)
Q Consensus 695 ~~~~~~~~~eitle-~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~ 769 (956)
+. ++ ..+++. .+|..+++++++.|+++| +++++||+||+|+++|+.|+|+++.+++.++++.+++. ++.++
T Consensus 291 ~~-~i---~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 291 KI-DI---PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred hC-CC---ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 53 32 233333 589999999999999999 78999999999999999999999999999999999997 56788
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
+|||+||||||.++|++|++++.+++++++++|.|+|+||||++++.
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCc
Confidence 99999999999999999999999999999999999999999999874
No 88
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.3e-23 Score=243.41 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=153.8
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCH----HHHHHHHHHHHHHc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD----TGLDYLLKNIKKLL 697 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~----~~l~~ll~~i~~~~ 697 (956)
.-...|++.|+||.++..+|+ .+.+.++.|++|++...+ ..++.+.|.|.+.+.... ..+..|++.+.+.
T Consensus 154 ~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Vv~Ei~~l~~----~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~- 227 (445)
T PRK14340 154 PVMRGCNNMCAFCVVPFTRGR-ERSHPFASVLDEVRALAE----AGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA- 227 (445)
T ss_pred EeccCCCCCCCCCCcccccCC-CcCCCHHHHHHHHHHHHH----CCCeEEEEeecccchhhccCCCchHHHHHHHHhhc-
Confidence 345788899999998766554 456778999999988654 246778876655443321 2366677776543
Q ss_pred ccCCCceeEEEe-CCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEE
Q psy2378 698 LFKKNISITLEA-NPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDL 772 (956)
Q Consensus 698 ~~~~~~eitle~-np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dl 772 (956)
.....+.+.+ +|..+++++++.|++. ||++++||+||+||++|+.|+|+++.+++.++++.+++. ++.+++||
T Consensus 228 --~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~ 305 (445)
T PRK14340 228 --APEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDL 305 (445)
T ss_pred --CCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccE
Confidence 2233455544 8999999999999986 799999999999999999999999999999999999998 89999999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCccccc
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 814 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~ 814 (956)
|+|+||||+++|++|++++.+++++++.+|.|+|+|||++++
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~ 347 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAAR 347 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhh
Confidence 999999999999999999999999999999999999999996
No 89
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.3e-23 Score=244.05 Aligned_cols=187 Identities=15% Similarity=0.166 Sum_probs=156.2
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCH----HHHHHHHHHHHHHc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD----TGLDYLLKNIKKLL 697 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~----~~l~~ll~~i~~~~ 697 (956)
.-...||+.|+||.++...++ .+.+.++.|++|++...+ ..++.|+|.|.+++.... ..+..+++.+.+..
T Consensus 151 ~i~rGC~~~CsFC~~p~~~g~-~rsr~~e~V~~Ei~~l~~----~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~ 225 (437)
T PRK14331 151 TVMRGCDKKCTYCVVPKTRGK-ERSRRLGSILDEVQWLVD----DGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID 225 (437)
T ss_pred EeccCcCCCCccCCcccCCCC-cccCCHHHHHHHHHHHHH----CCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC
Confidence 335899999999998765554 466779999999988754 247889988877765432 23566666665532
Q ss_pred ccCCCceeEEE-eCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEE
Q psy2378 698 LFKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDL 772 (956)
Q Consensus 698 ~~~~~~eitle-~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dl 772 (956)
++ ..+.+. .+|..+++++++.|+++ ||+++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.+++||
T Consensus 226 g~---~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~ 302 (437)
T PRK14331 226 GV---ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDI 302 (437)
T ss_pred Cc---cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCE
Confidence 21 234433 37889999999999998 599999999999999999999999999999999999998 88999999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
|+|+||||+++|++|++++.+++++++++|.|+|+|||+++++.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~ 346 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYME 346 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCC
Confidence 99999999999999999999999999999999999999999875
No 90
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=3.4e-23 Score=241.61 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=150.7
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCC----------CCCCCHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT----------PSLISDTGLDYLLK 691 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggt----------Ps~L~~~~l~~ll~ 691 (956)
.-...||+.|+||.++..+|. .+.+.++.+++|++.+.+. .++.|.|.|.+ ++......+.+|++
T Consensus 173 ~isrGCp~~CsFC~ip~~~G~-~rsrs~e~Vv~Ei~~l~~~----g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 173 SIMRGCDNMCTFCVVPFTRGR-ERSRDPESILNEVRDLFAK----GYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred EeccCcccCCCCCccccccCC-cccCCHHHHHHHHHHHHHC----CCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 335789999999998776554 4667899999999876542 24455444322 11111235777777
Q ss_pred HHHHHcccCCCceeEEE-eCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CC
Q psy2378 692 NIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FN 766 (956)
Q Consensus 692 ~i~~~~~~~~~~eitle-~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~ 766 (956)
.+.+..+ ...+++. .+|..+++++++.|+++ ||++++||+||+||++|+.|||+++.+++.++++.+++. ++
T Consensus 248 ~l~~~~~---~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 248 MVAEAVP---DMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHhcCC---CcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 7765422 2345554 48999999999999987 899999999999999999999999999999999999997 56
Q ss_pred eeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC
Q psy2378 767 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 767 ~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~ 815 (956)
.+++|||+|+||||.++|++|++++.+++++++++|.|+|+|||++++.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~ 373 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARK 373 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhh
Confidence 7999999999999999999999999999999999999999999999963
No 91
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.90 E-value=4.9e-23 Score=229.83 Aligned_cols=228 Identities=13% Similarity=0.168 Sum_probs=169.8
Q ss_pred cccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc--------------------CC----c----hh
Q psy2378 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--------------------GN----K----KH 55 (956)
Q Consensus 4 ~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~--------------------~~----~----~~ 55 (956)
...+| +||+.+|-=..-+....+.+. ..| +|.++|--++.+.-. +. . .+
T Consensus 44 ~Gl~l-~nPi~~AsG~~~~~~~~~~~~-~~G-~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~ 120 (327)
T cd04738 44 FGLTF-PNPVGLAAGFDKNAEAIDALL-ALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKR 120 (327)
T ss_pred CCEEC-CCCCEeCcCCCCCHHHHHHHH-HCC-CcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHH
Confidence 34678 999988653222223455554 455 677776655443211 10 0 01
Q ss_pred ccccCCCCCCEEEEecCCC-------HHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHh
Q psy2378 56 CLDFNAEEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128 (956)
Q Consensus 56 ~~~~~~~~~p~~vQl~g~~-------~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 128 (956)
+......+.|+++||+|++ +++|++.++.+.+. +|+||||++||... |...+++++.+.+++++||
T Consensus 121 l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~ 193 (327)
T cd04738 121 LKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVK 193 (327)
T ss_pred HHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC------ccccccCHHHHHHHHHHHH
Confidence 1111124689999999987 68899999888764 99999999999742 3445789999999999999
Q ss_pred hccC-----ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc------------cccCCCCCCCCCCcCc
Q psy2378 129 DSVE-----IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILK 191 (956)
Q Consensus 129 ~~~~-----~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~------------~~g~~~~~~~~~~~~~ 191 (956)
+.++ +||+||++.+++. ++..++++.++++|+|+|++|+|+.. .+|++|. ...+..
T Consensus 194 ~~~~~~~~~~Pv~vKl~~~~~~----~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~---~~~~~~ 266 (327)
T cd04738 194 EERNKLGKKVPLLVKIAPDLSD----EELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGA---PLKERS 266 (327)
T ss_pred HHHhhcccCCCeEEEeCCCCCH----HHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCCh---hhhHHH
Confidence 9986 9999999987653 35789999999999999999988631 1123222 222356
Q ss_pred HHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC-CcchHHHHHh
Q psy2378 192 YNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN 248 (956)
Q Consensus 192 ~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~-P~l~~~i~~~ 248 (956)
|++++++++.++ ++|||++|||.|++|+.+++.. ||+||+||+++.+ ||++.++.++
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 899999999874 5999999999999999999988 9999999999875 9999999864
No 92
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.9e-23 Score=241.06 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=151.8
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCC----C-CHHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL----I-SDTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~----L-~~~~l~~ll~~i~~~ 696 (956)
.-...||+.|+||.++..+|+. +.+.++.+++|++...+. .++.+.|.|.+... + ....+..+++.+.+.
T Consensus 145 ~i~rGC~~~CsFC~ip~~~G~~-rsr~~e~Iv~Ei~~l~~~----g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 145 TIIYGCNRFCTYCIVPYTRGRE-KSRPMEDILEEVEKLAKQ----GYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred EcccCCCCCCCCCceECcCCCC-ccCCHHHHHHHHHHHHHC----CCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 3358999999999988766654 567789999999876542 35567665443221 1 223466666665543
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEE
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDL 772 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dl 772 (956)
-++. ..+....+|..+++++++.|+++| +++++||+||+|+++|+.|+|+++.+++.++++.+++. ++.+++||
T Consensus 220 ~~~~--~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~ 297 (434)
T PRK14330 220 EGIE--RIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDI 297 (434)
T ss_pred CCce--EEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2221 123345689999999999999987 79999999999999999999999999999999999996 67899999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~ 815 (956)
|+|+||||+++|++|++++.+++++++++|.|+|+|||+++++
T Consensus 298 IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~ 340 (434)
T PRK14330 298 IVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKY 340 (434)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhh
Confidence 9999999999999999999999999999999999999999984
No 93
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.6e-23 Score=232.95 Aligned_cols=186 Identities=15% Similarity=0.101 Sum_probs=152.6
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEE--------ecCCCCCCCCHHHHHHHHH
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIF--------IGGGTPSLISDTGLDYLLK 691 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~--------fgggtPs~L~~~~l~~ll~ 691 (956)
|..-.-.|...|+||.++...|+. .++.++.+++|++.+.+. +++.|. +|.+.+.- ...+..|++
T Consensus 147 ~v~I~eGCn~~CtfCiiP~~RG~~-rSr~~e~Il~ev~~Lv~~----G~kEI~L~gqdv~aYG~D~~~~--~~~l~~Ll~ 219 (437)
T COG0621 147 FVKIQEGCNKFCTFCIIPYARGKE-RSRPPEDILKEVKRLVAQ----GVKEIVLTGQDVNAYGKDLGGG--KPNLADLLR 219 (437)
T ss_pred EEEhhcCcCCCCCeeeeeccCCCc-cCCCHHHHHHHHHHHHHC----CCeEEEEEEEehhhccccCCCC--ccCHHHHHH
Confidence 344567999999999998887765 456689999999987653 233333 34444320 234677777
Q ss_pred HHHHHcccCCCceeEEEe-CCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CC
Q psy2378 692 NIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FN 766 (956)
Q Consensus 692 ~i~~~~~~~~~~eitle~-np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~ 766 (956)
.+.+ ++....+.+-. +|..+++++++++++.. +++++|.+||+||++||.|+|+|+.+++.+.++.+|+. ..
T Consensus 220 ~l~~---I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~ 296 (437)
T COG0621 220 ELSK---IPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDI 296 (437)
T ss_pred HHhc---CCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCc
Confidence 7766 33334555544 89999999999999963 79999999999999999999999999999999999987 66
Q ss_pred eeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC
Q psy2378 767 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 767 ~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~ 815 (956)
.+++|||+||||||+|+|++|++++.+.+++++++|.|+|+||||.+.+
T Consensus 297 ~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 297 AISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred eEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccC
Confidence 8999999999999999999999999999999999999999999999965
No 94
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=5.9e-23 Score=239.40 Aligned_cols=205 Identities=13% Similarity=0.136 Sum_probs=162.0
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC-------HHHHHHHHHHHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-------DTGLDYLLKNIKKL 696 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~-------~~~l~~ll~~i~~~ 696 (956)
...||+.|+||..+..+|... .+.++.|++|++.+.+. .++.+.|.|.+.+... ..++..+++.+.+.
T Consensus 154 srGCp~~CsFC~~p~~~G~~~-sr~~e~Iv~Ei~~l~~~----g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~ 228 (444)
T PRK14325 154 MEGCDKYCTFCVVPYTRGEEV-SRPVDDVLAEVAQLAEQ----GVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAI 228 (444)
T ss_pred hhCCCCCCCccccCcccCCcc-cCCHHHHHHHHHHHHHC----CCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhc
Confidence 468889999999887666544 57799999999876542 3567777766644431 23577777777653
Q ss_pred cccCCCceeEEEe-CCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEE
Q psy2378 697 LLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitle~-np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~d 771 (956)
.....+.+.+ +|..+++++++.|+++| |+++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.+++|
T Consensus 229 ---~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~ 305 (444)
T PRK14325 229 ---DGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSD 305 (444)
T ss_pred ---CCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 2222355544 79999999999999975 99999999999999999999999999999999999997 7789999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 838 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 838 (956)
||+|+||||.++|++|++++.+++++++.+|.|+|+|||+++++.. +. +.+.+.+.+..+.+...
T Consensus 306 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~-~v-~~~~~~~r~~~l~~~~~ 370 (444)
T PRK14325 306 FIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPD-DV-PEEVKKERLQRLQALIN 370 (444)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCC-CC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998852 12 33444444444444333
No 95
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=5.8e-23 Score=238.60 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=150.1
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEec--------CCCCCCCCHHHHHHHHH
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIG--------GGTPSLISDTGLDYLLK 691 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fg--------ggtPs~L~~~~l~~ll~ 691 (956)
|..-.++|+..|+||..+...+.. ..++++.+++|++...+. .++.|+|. +++|... .+..|++
T Consensus 141 ~l~isrGC~~~CsfC~~p~~~g~~-~sr~~e~Iv~Ei~~l~~~----G~keI~l~g~~~~~yG~d~~~~~---~~~~Ll~ 212 (440)
T PRK14334 141 HLTIMRGCNHHCTYCIVPTTRGPE-VSRHPDLILRELELLKAA----GVQEVTLLGQNVNSYGVDQPGFP---SFAELLR 212 (440)
T ss_pred EEEeccCCCCCCcCCCcchhcCCC-ccCCHHHHHHHHHHHHHC----CCeEEEEEeccccccccCCCCcC---CHHHHHH
Confidence 434469999999999988765543 467899999999876542 24555553 3444332 3556666
Q ss_pred HHHHHcccCCCceeEEE-eCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC--C
Q psy2378 692 NIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF--N 766 (956)
Q Consensus 692 ~i~~~~~~~~~~eitle-~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~--~ 766 (956)
.+.+. ++ ..+.+. .+|..+++++++.|++. ||++++||+||+|+++|+.|+|+++.+++.++++.+++.+ +
T Consensus 213 ~l~~~-~i---~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i 288 (440)
T PRK14334 213 LVGAS-GI---PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDV 288 (440)
T ss_pred HHHhc-CC---cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCc
Confidence 66542 22 234443 38999999999999995 5999999999999999999999999999999999999985 4
Q ss_pred eeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 767 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 767 ~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
.+++|||+|+||||.++|++|++++.+++++++++|.|+|+|||+++++.
T Consensus 289 ~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~ 338 (440)
T PRK14334 289 VLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHF 338 (440)
T ss_pred EEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhcc
Confidence 58999999999999999999999999999999999999999999999874
No 96
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=6.1e-23 Score=236.55 Aligned_cols=187 Identities=11% Similarity=0.063 Sum_probs=153.1
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC--------HHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS--------DTGLDYLLKNI 693 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~--------~~~l~~ll~~i 693 (956)
.-...|++.|+||..+..+|+..+ +.++.|++|++...+. .++.|+|.|.+.+... ...+..+++.+
T Consensus 132 ~isrGC~~~CsFC~ip~~rG~~~s-r~~e~I~~Ei~~l~~~----G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 132 NISIGCDKKCTYCIVPHTRGKEIS-IPMDLILKEAEKAVNN----GAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred EecCCCCCCCCcCCcccccCCCCC-CCHHHHHHHHHHHHHC----CCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 445789999999999887776554 5789999999876542 4667777765543221 12366666666
Q ss_pred HHHcccCCCceeEEE-eCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCee
Q psy2378 694 KKLLLFKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNF 768 (956)
Q Consensus 694 ~~~~~~~~~~eitle-~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i 768 (956)
.+. .....+++. .+|..+++++++.|++. ||.+++||+||+||++|+.|||+++.+++.++++.+++. ++.+
T Consensus 207 ~~~---~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i 283 (420)
T PRK14339 207 SEI---EGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSI 283 (420)
T ss_pred hcC---CCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 542 222234442 58889999999999987 699999999999999999999999999999999999997 6789
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 769 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 769 ~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
++|||+|+||||+++|++|++++.+++++++.+|.|+|+||||++++.
T Consensus 284 ~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~ 331 (420)
T PRK14339 284 STDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWK 331 (420)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCC
Confidence 999999999999999999999999999999999999999999999875
No 97
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.89 E-value=8.6e-23 Score=229.06 Aligned_cols=174 Identities=15% Similarity=0.161 Sum_probs=145.5
Q ss_pred CCCCEEEEecCC-------CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC--
Q psy2378 62 EEHPIAFQVGDN-------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-- 132 (956)
Q Consensus 62 ~~~p~~vQl~g~-------~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-- 132 (956)
.+.|+++||.|+ ..++|++.++.+.+ ++|+||+|++||... |....++++.+.+|+++||+.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~ 208 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAEL 208 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhcc
Confidence 467999999986 57899999998876 699999999999754 33348899999999999999997
Q ss_pred ---ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccccc------------ccCCCCCCCCCCcCcHHHHHH
Q psy2378 133 ---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL------------KKLNPKQNRKIPILKYNFVYN 197 (956)
Q Consensus 133 ---~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~------------~g~~~~~~~~~~~~~~~~i~~ 197 (956)
+||+||++.+++. ++..++++.++++|+|+|++|+|+... +|++|+ ...+..|+++++
T Consensus 209 ~~~~PV~vKlsp~~~~----~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~---~~~~~~l~~v~~ 281 (344)
T PRK05286 209 HGYVPLLVKIAPDLSD----EELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGR---PLFERSTEVIRR 281 (344)
T ss_pred ccCCceEEEeCCCCCH----HHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccH---HHHHHHHHHHHH
Confidence 9999999987653 347899999999999999999986311 122222 122458999999
Q ss_pred HHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHhh
Q psy2378 198 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 249 (956)
Q Consensus 198 v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~~ 249 (956)
+++.++ ++|||++|||.|++|+.+++.. ||+||+||+++. +||+++++++++
T Consensus 282 l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 282 LYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence 999874 5999999999999999999988 999999999987 599999998754
No 98
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=7.2e-23 Score=238.35 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=151.1
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC------------CCCCCCCHHHHHHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG------------GTPSLISDTGLDYLLK 691 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg------------gtPs~L~~~~l~~ll~ 691 (956)
...|+..|+||.++...|.. +.+.++.|++|++...+. .++.+.|.| ++|+......+..+++
T Consensus 155 ~~GC~~~CsFC~ip~~rG~~-rsr~~e~V~~Ei~~l~~~----g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~ 229 (448)
T PRK14333 155 IYGCNERCTYCVVPSVRGKE-QSRTPEAIRAEIEELAAQ----GYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLY 229 (448)
T ss_pred hcCCCCCCCCCceecccCCC-cccCHHHHHHHHHHHHHC----CCcEEEEEecccchhcCCCCCccccccccccHHHHHH
Confidence 45699999999988776644 566789999999876542 244454433 2333222235777777
Q ss_pred HHHHHcccCCCceeEE-EeCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CC
Q psy2378 692 NIKKLLLFKKNISITL-EANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FN 766 (956)
Q Consensus 692 ~i~~~~~~~~~~eitl-e~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~ 766 (956)
.+.+. .....+++ ..+|+.+++++++.|++. +|++++||+||+|+++|+.|+|+++.+++.++++.+++. ++
T Consensus 230 ~i~~~---~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i 306 (448)
T PRK14333 230 YIHDV---EGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDA 306 (448)
T ss_pred HHHhc---CCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 77653 22234555 458999999999999986 599999999999999999999999999999999999998 67
Q ss_pred eeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 767 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 767 ~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
.+++|||+|+||||+++|++|++++.+++++++++|.|+|+|||+++++.
T Consensus 307 ~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~ 356 (448)
T PRK14333 307 SISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWD 356 (448)
T ss_pred EEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCC
Confidence 89999999999999999999999999999999999999999999999874
No 99
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.89 E-value=3.6e-22 Score=222.31 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=144.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
+.|+++||+|+++++|.++|+.++++|+|+||||++||. ...+.+|+.+ ++.+.++++++++.+++||+||+++.
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~--~~~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALP--TDPDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--CCCCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 689999999999999999999999999999999999963 2235566654 57899999999999999999999986
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc------------cccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEe
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN 210 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~------------~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~n 210 (956)
.++ ..++++.++++|+|+|++|.|+.. ..|+||+ ...+..|++++++++.+ ++|||++
T Consensus 174 ~~~------~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~---~~~~~al~~v~~v~~~~-~ipIig~ 243 (325)
T cd04739 174 FSA------LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSP---AEIRLPLRWIAILSGRV-KASLAAS 243 (325)
T ss_pred ccC------HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCc---cchhHHHHHHHHHHccc-CCCEEEE
Confidence 542 578999999999999999988621 0122222 22345678899999887 7999999
Q ss_pred cCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHhh
Q psy2378 211 GGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 249 (956)
Q Consensus 211 GgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~~ 249 (956)
|||.|++||.+++.. ||+||+||+++. +|+++.++.+++
T Consensus 244 GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 244 GGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred CCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 999999999999988 999999999998 599999988766
No 100
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.4e-22 Score=237.77 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=154.7
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCC-----CCHHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL-----ISDTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~-----L~~~~l~~ll~~i~~~ 696 (956)
.-...|++.|+||.++..+|+. +.+.++.|++|++...+. .++.+.|.|.+.+. .+...+.++++.+.+.
T Consensus 162 ~isrGCp~~CsFC~ip~~rG~~-rsr~~e~Vv~Ei~~l~~~----g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 162 SISVGCNNTCTFCIVPSLRGKE-KDRRPGDILAEVQALVDE----GVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred EEccCCCCCCccCceeccCCCc-ccCCHHHHHHHHHHHHHC----CCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 3467899999999998877754 566789999999887652 36777776665432 2334566677666543
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEE
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDL 772 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dl 772 (956)
-++. ...|+ ..+|..+++|++++|+++| |.+++||+||+||++|+.|+|+|+.+++.++++.+++. ++.+++||
T Consensus 237 ~~l~-~ir~~-~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~ 314 (502)
T PRK14326 237 DGLE-RVRFT-SPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDI 314 (502)
T ss_pred CCcc-EEEEe-ccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1221 12333 2488899999999999987 99999999999999999999999999999999999996 67899999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
|+|+||||+++|++|++++.+++++++.+|.|+|+|||+++++.
T Consensus 315 IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 315 IVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCc
Confidence 99999999999999999999999999999999999999999874
No 101
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.1e-22 Score=234.21 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=153.5
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC-----HHHHHHHHHHHHHHcc
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLDYLLKNIKKLLL 698 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~-----~~~l~~ll~~i~~~~~ 698 (956)
...|++.|+||.++...|.. +.+.++.+++|++.+.+ ..++.++|.|.+.+... ...+..+++.+.+.
T Consensus 131 ~rGC~~~CsFC~ip~~rG~~-rsrs~e~Iv~Ei~~l~~----~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~-- 203 (418)
T PRK14336 131 MQGCDNFCTYCVVPYRRGRE-KSRSIAEIGCEVAELVR----RGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI-- 203 (418)
T ss_pred ccCCCCCCccCCccccCCCC-ccCCHHHHHHHHHHHHH----CCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc--
Confidence 46888899999988766644 66778999999988754 24677888877755321 23466777777553
Q ss_pred cCCCceeEEE-eCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEEe
Q psy2378 699 FKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLI 773 (956)
Q Consensus 699 ~~~~~eitle-~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dlI 773 (956)
.....+++. .+|..+++++++.|++. +++++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.+++|||
T Consensus 204 -~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~I 282 (418)
T PRK14336 204 -PGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLI 282 (418)
T ss_pred -CCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEE
Confidence 222345543 38999999999999985 599999999999999999999999999999999999998 889999999
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCccccc
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 814 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~ 814 (956)
+|+||||.++|+++++++.+++++.+++|.|+|+|||++++
T Consensus 283 vGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~ 323 (418)
T PRK14336 283 VGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAAR 323 (418)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHh
Confidence 99999999999999999999999999999999999999995
No 102
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.89 E-value=1.4e-22 Score=235.43 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=153.6
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCC-C------HHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-S------DTGLDYLLKNIK 694 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L-~------~~~l~~ll~~i~ 694 (956)
.-...|+..|+||..+..+|.. +.+.++.+++|++...+. .++.+.|.|.+.+.. . ...+..+++.+.
T Consensus 150 ~i~rGC~~~CsfC~~~~~~G~~-rsr~~e~I~~Ei~~l~~~----g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 150 NIMIGCNKFCTYCIVPYTRGDE-ISRPFDDILQEVQKLAEK----GVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred ehhcCCCCCCCCCCeeeecCCC-cccCHHHHHHHHHHHHHc----CCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 3357899999999987766654 567799999999876542 356777766554433 1 123566677665
Q ss_pred HHcccCCCceeEE-EeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeE
Q psy2378 695 KLLLFKKNISITL-EANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFN 769 (956)
Q Consensus 695 ~~~~~~~~~eitl-e~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~ 769 (956)
+..++ ..+.+ .++|..+++++++.|+++| |+++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.++
T Consensus 225 ~~~~~---~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~ 301 (438)
T TIGR01574 225 TIDGI---ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSIS 301 (438)
T ss_pred hcCCc---eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 43222 23343 3589999999999999998 99999999999999999999999999999999999987 67889
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
+|||+|+||||+++|++|++++.+++++++.+|.|+|+|||+++++.
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~ 348 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMP 348 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCC
Confidence 99999999999999999999999999999999999999999999874
No 103
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.89 E-value=1.2e-22 Score=236.14 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=153.7
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCC-----CHHHHHHHHHHHHHHc
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-----SDTGLDYLLKNIKKLL 697 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L-----~~~~l~~ll~~i~~~~ 697 (956)
-...||+.|+||..+..++ ..+.+.++.|++|++.+.+. .++.+.|.|.+.+.. ....+..+++.+.+.
T Consensus 145 ~srGC~~~CsfC~~~~~~g-~~r~r~~e~Vv~Ei~~l~~~----g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~- 218 (429)
T TIGR00089 145 IQEGCDKFCTYCIVPYARG-RERSRPPEDILEEVKELVSK----GVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI- 218 (429)
T ss_pred HHhCcCCCCCcCceecccC-CCCCCCHHHHHHHHHHHHHC----CCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC-
Confidence 3468889999999887766 45667789999999886542 356677766543322 113466677776553
Q ss_pred ccCCCceeEEE-eCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC--CeeEEEE
Q psy2378 698 LFKKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF--NNFNLDL 772 (956)
Q Consensus 698 ~~~~~~eitle-~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~--~~i~~dl 772 (956)
.....+.+. .+|..++++++++|+++| |+++++|+||+|+++|+.|+|+++.+++.++++.+++.+ +.+++||
T Consensus 219 --~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~ 296 (429)
T TIGR00089 219 --DGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDI 296 (429)
T ss_pred --CCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeE
Confidence 122244443 488889999999999985 999999999999999999999999999999999999986 7899999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
|+|+||||+++|++|++++.+++++++++|.|+|+|||+++++.
T Consensus 297 IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~ 340 (429)
T TIGR00089 297 IVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMK 340 (429)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCC
Confidence 99999999999999999999999999999999999999999875
No 104
>PRK08815 GTP cyclohydrolase; Provisional
Probab=99.88 E-value=2.9e-24 Score=238.16 Aligned_cols=191 Identities=13% Similarity=0.202 Sum_probs=136.7
Q ss_pred ccccccCCCCHHHHHHHHHhhcccccccCCHHHHHHccCccccccCCCCCCCcceEEEeccCCCcccCChhhhhHHHHHh
Q psy2378 277 DIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVA 356 (956)
Q Consensus 277 dlv~~a~~~t~~~v~fm~~y~~Glic~~l~~~~~~~L~l~~m~~~n~~~~~~~~~~~~~~~~~~~tgis~~dra~t~~~~ 356 (956)
+++++++..+++.++||.+|++|++|++++.+++++|+|++|. .||++|+ || ++|||+||+.+
T Consensus 43 dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~---------~~t~~is-------~i-d~dRa~Ti~~~ 105 (375)
T PRK08815 43 RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ---------GARVALP-------DV-DYDRLAALAYL 105 (375)
T ss_pred EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc---------CcEEeEe-------cc-hHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999992 2333332 33 37999999999
Q ss_pred hcCCCCCCCccCCCccceeeeccCcccccCChhhHHHHHHHHcCCCcchhhhhcccccccccccccCceEEEEcCCcccH
Q psy2378 357 SSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEI 436 (956)
Q Consensus 357 ~~~~~~~~~~~~pghv~pl~~~~~g~~~r~g~tea~~~l~~~ag~~~~~vi~e~~~~~g~~~~~~e~~i~~~~vpg~~e~ 436 (956)
+++ +|.||++|||||| |||||||||||+.|++||||++++++. ... +++++++....+.
T Consensus 106 ~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Paavi~Ei~~~~~~--~fa--~L~i~tI~dLi~y 164 (375)
T PRK08815 106 RDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPAMVAVPLPVHDEA--AFA--GCQALALADLDAG 164 (375)
T ss_pred hcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCceEEEEEEccCCCh--hhC--CCcEeeHHHHHHH
Confidence 998 5899999999997 999999999999999999999995432 222 7888888776655
Q ss_pred HH-HHHHHHhc-----------cCCceEEEEeEEEeC---CcchhHHHHHHHHHHHHHHhhhcCccE----------EEE
Q psy2378 437 PL-ALKNIIQI-----------KKFNVLIAIGVIIRG---ETYHFELIANETISNIMQISIKNNIPI----------INA 491 (956)
Q Consensus 437 p~-~~~~~~~~-----------~~~d~~i~lg~vi~g---~t~h~~~v~~~~~~~~~~~~~~~~~pv----------~~g 491 (956)
.. .-+.++++ +.|+.++ .|. .+.|+-+|.. ++.-+..++| +||
T Consensus 165 R~~~~e~~v~~v~~~~lpt~~~g~f~~~~-----yr~~~~~~eH~ALv~G-------~~~~~~~vlVRVHs~c~tgDvfg 232 (375)
T PRK08815 165 CATSAAAGYELVTRTPVPLRGLGMTEFVV-----FRGGVAQRDQVAIVVG-------QPDLSSAVPVRVHSSCLTGDLFG 232 (375)
T ss_pred HHhCcccceEEEEEEecccCCcCcEEEEE-----EEeCCCCcEEEEEEeC-------CCCCCCCceEEEeccCcHHHHhc
Confidence 54 22333211 1222111 121 1233322221 1222234556 678
Q ss_pred ecCC---CCHHHHHhhhcccCceeEEEec
Q psy2378 492 ILTT---ETIEQANSRILTKGEIIIFINH 517 (956)
Q Consensus 492 vlt~---~~~~qa~~r~~~~~~~~~~~~~ 517 (956)
-+.| .+.++|++++..+|..|+++=+
T Consensus 233 s~~cdc~~qL~~Al~~I~~~G~GVlvyL~ 261 (375)
T PRK08815 233 SLKCDCGDQLRHGLAKLKELGGGVLLYLD 261 (375)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCEEEEEEc
Confidence 7877 4588899998777766655544
No 105
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=2.4e-22 Score=233.68 Aligned_cols=189 Identities=15% Similarity=0.097 Sum_probs=153.7
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC------HHHHHHHHHHH
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS------DTGLDYLLKNI 693 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~------~~~l~~ll~~i 693 (956)
|..-...|++.|+||..+..+++. +.+.++.|++|++...+. .++.|.|.|.+.+... ...+..+++.+
T Consensus 151 ~v~i~rGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~Ei~~l~~~----G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l 225 (446)
T PRK14337 151 FVNIMQGCDNFCAYCIVPYTRGRQ-KSRSSAAVLDECRALVDR----GAREITLLGQNVNSYGQDKHGDGTSFAQLLHKV 225 (446)
T ss_pred EEEeccCCCCCCcCCCcccCCCCC-eeCCHHHHHHHHHHHHHC----CCeEEEEEecCccccccCCCCCCccHHHHHHHH
Confidence 334458999999999887665544 567789999999887652 4677888775543221 12466666666
Q ss_pred HHHcccCCCceeEEE-eCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCee
Q psy2378 694 KKLLLFKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNF 768 (956)
Q Consensus 694 ~~~~~~~~~~eitle-~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i 768 (956)
.+. .....+.+. .+|..+++++++.|++. ||+++++|+||+|+++|+.|||+++.+++.++++.+++. ++.+
T Consensus 226 ~~~---~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i 302 (446)
T PRK14337 226 AAL---PGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIAL 302 (446)
T ss_pred Hhc---CCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 543 121223332 58999999999999984 699999999999999999999999999999999999997 5779
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 769 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 769 ~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
++|||+|+||||.++|++|++++.+++++++.+|.|+|+|||+.++++
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~ 350 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLP 350 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCC
Confidence 999999999999999999999999999999999999999999999875
No 106
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.88 E-value=2.5e-22 Score=236.22 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=157.7
Q ss_pred CCCcceeeeeeeccccc-CCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSF-GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~-~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.||+.|.||..+..+ +...+.+.++.|++||+...+.+ ..++.++|.|++++ .+.+++.++++.+.+. +
T Consensus 203 sRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~--~~~~~i~f~Dd~f~-~~~~~~~~l~~~l~~~-~---- 274 (472)
T TIGR03471 203 GRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF--PEVREFFFDDDTFT-DDKPRAEEIARKLGPL-G---- 274 (472)
T ss_pred cCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhc--CCCcEEEEeCCCCC-CCHHHHHHHHHHHhhc-C----
Confidence 35788999999876544 44456778999999998776543 24688999999865 5667888899888753 2
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHH
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLS 782 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e 782 (956)
..|.++++. .+++|+++.|+++||+++++|+||+|+++|+.++|+++.+++.++++.++++|+.++++||+|+||||.+
T Consensus 275 i~~~~~~~~-~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e 353 (472)
T TIGR03471 275 VTWSCNARA-NVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRE 353 (472)
T ss_pred ceEEEEecC-CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHH
Confidence 355666654 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCeEEEEeeeccCCcccccC
Q psy2378 783 ELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 783 ~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~ 815 (956)
++++|++++.++++++++++.++|+|||++++.
T Consensus 354 ~~~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~~ 386 (472)
T TIGR03471 354 TIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQ 386 (472)
T ss_pred HHHHHHHHHHhcCCCceeeeecccCCCcHHHHH
Confidence 999999999999999999999999999999864
No 107
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=5.7e-22 Score=230.42 Aligned_cols=208 Identities=11% Similarity=0.077 Sum_probs=161.7
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC-----HHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~-----~~~l~~ll~~i~~~ 696 (956)
.-...||+.|.||..+..++.. +.+.++.+++|++...+ ..++.+.|.|.+.+... ...+..+++.+.+.
T Consensus 152 ~i~rGC~~~CsfC~~p~~~g~~-Rsr~~e~Iv~Ei~~l~~----~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 152 TIMYGCNNFCTYCIVPYVRGRE-RSRKPEDIIAEIKELVS----EGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred EHHhCcCCCCCCCCcccccCCc-ccCCHHHHHHHHHHHHH----CCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 3346888999999988766654 55668999999987654 24567777776544321 12356666666542
Q ss_pred cccCCCceeEE-EeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEE
Q psy2378 697 LLFKKNISITL-EANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitl-e~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~d 771 (956)
.....+.+ ..+|+.+++++++.|+++| |+++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.+++|
T Consensus 227 ---~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 227 ---DGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred ---CCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 22223443 3589999999999999986 99999999999999999999999999999999999997 5678999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 839 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 839 (956)
||+|+||||++++++|++++.+++++++++|.|+|+|||+++++... .+.+...+.+..+.+...+
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~--v~~~~~~~r~~~l~~~~~~ 369 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQ--VPEDVKHERFNRLVELQNK 369 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987432 2344445555555444433
No 108
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.87 E-value=1.2e-21 Score=227.43 Aligned_cols=187 Identities=16% Similarity=0.120 Sum_probs=152.7
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCC----CCHHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSL----ISDTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~----L~~~~l~~ll~~i~~~ 696 (956)
.-...||+.|+||..+..+++ .+.+.++.+++|++...+. .++.+.|.+ .+.++ ....++..|++.+.+.
T Consensus 140 ~~srGC~~~CsfC~~~~~~G~-~r~r~~e~Vv~Ei~~l~~~----g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 140 KVAEGCNRRCAFCIIPSIRGK-LRSRPIEEILKEAERLVDQ----GVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred EEccCCCCCCCcCCeecccCC-ceecCHHHHHHHHHHHHHC----CCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 345688889999998876654 4567789999999886542 245566543 22222 2345688888888764
Q ss_pred cccCCCceeEE-EeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEE
Q psy2378 697 LLFKKNISITL-EANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitl-e~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~d 771 (956)
+ ....+++ .++|..++++++++|+++| +.++++|+||+++++|+.|+|+++.+++.++++.+++. ++.+++|
T Consensus 215 -~--~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 215 -G--GIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred -C--CccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 2 1122332 3589999999999999985 89999999999999999999999999999999999997 5678999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
||+|+||||.++|++|++++.+++++++++|.|+|+|||+++++.
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~ 336 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALP 336 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCC
Confidence 999999999999999999999999999999999999999999874
No 109
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.5e-21 Score=227.67 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=154.6
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCC-----CHHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-----SDTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L-----~~~~l~~ll~~i~~~ 696 (956)
.-...|++.|+||..+...+.. +.+.++.+++|++...+ ..++.+.|.|.+.+.. ....+..|++.+.+.
T Consensus 160 ~I~rGC~~~CsfC~~p~~~G~~-rsr~~e~Il~ei~~l~~----~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 160 PIIYGCNMSCSYCVIPLRRGRE-RSRPLAEIVEEVRRIAA----RGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred EcccCCCCCCCcCCeeccCCCC-ccCCHHHHHHHHHHHHH----CCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 3457999999999887765643 55668999999987654 2467788877553332 234577788877664
Q ss_pred cccCCCceeEE-EeCCCCCCHHHHHHHHHc--CCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEE
Q psy2378 697 LLFKKNISITL-EANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitl-e~np~~it~e~L~~L~~~--Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~d 771 (956)
.++ ..+++ ..+|..+++++++.|++. |++++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.+++|
T Consensus 235 ~gi---~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d 311 (459)
T PRK14338 235 PGL---ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTD 311 (459)
T ss_pred CCc---ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 221 23443 358999999999999985 599999999999999999999999999999999999997 6789999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
||+|+||||.++|++|++++.+++++.++++.|+|+|||+++++.
T Consensus 312 ~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 312 IIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCc
Confidence 999999999999999999999999999999999999999999874
No 110
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.86 E-value=2.4e-21 Score=223.84 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=148.4
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC---HHHHHHHHHHHHHHcc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS---DTGLDYLLKNIKKLLL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~---~~~l~~ll~~i~~~~~ 698 (956)
.-...|++.|+||..+..+|. .+.+.++.|++|++...+. .++.+.|.|.+-+... ..++..+++.+.+.
T Consensus 138 ~isrGC~~~CsfC~ip~~~G~-~rsr~~e~Vl~Ei~~l~~~----G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i-- 210 (420)
T TIGR01578 138 PINQGCLGNCSYCITKHARGK-LASYPPEKIVEKARQLVAE----GCKEIWITSQDTGAYGRDIGSRLPELLRLITEI-- 210 (420)
T ss_pred EEccCCCCCCCCCccccCCCC-cccCCHHHHHHHHHHHHHC----CCeEEEEEeeccccccCCCCcCHHHHHHHHHhC--
Confidence 345688899999988766554 4566789999999876552 3566666543322221 12466677666542
Q ss_pred cCCCceeEEE-eCCC---CCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEE
Q psy2378 699 FKKNISITLE-ANPS---TFEIEKFHSYSIIG-INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLD 771 (956)
Q Consensus 699 ~~~~~eitle-~np~---~it~e~L~~L~~~G-v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~d 771 (956)
.....+++. ++|. .+++++++.++..+ |+++++|+||+|+++|+.|+|+++.+++.++++.+++. ++.+++|
T Consensus 211 -~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~ 289 (420)
T TIGR01578 211 -PGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTD 289 (420)
T ss_pred -CCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 222234433 3675 45788899887655 79999999999999999999999999999999999997 7789999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCC
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~ 817 (956)
||+|+||||++++++|++++.+++++++++|+|+|+|||+++++.+
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~ 335 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKR 335 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCC
Confidence 9999999999999999999999999999999999999999998753
No 111
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.86 E-value=1.5e-20 Score=208.05 Aligned_cols=192 Identities=14% Similarity=0.194 Sum_probs=152.4
Q ss_pred CCCcce----eeeeeecccccCCcchHHHHHHHHHHHhhhcccccccc---eeEEEecCC--CCCCCCHHHHHHHHHHHH
Q psy2378 624 IPYKVI----INEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRK---IHTIFIGGG--TPSLISDTGLDYLLKNIK 694 (956)
Q Consensus 624 ~P~c~~----~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~---i~~i~fggg--tPs~L~~~~l~~ll~~i~ 694 (956)
.-.|++ .|.||.......+. +..+.+.++|+...+.++... ...+|..|+ .|+.++++.+..+++.+.
T Consensus 22 srGC~~~~~g~C~FC~~~~~~~r~---~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~ 98 (313)
T TIGR01210 22 TRGCYWAREGGCYMCGYLADSSPE---VTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIA 98 (313)
T ss_pred CCCCCCCCCCcCccCCCCCCCCCC---CChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHH
Confidence 456776 59999765432221 234556666665544332211 224455544 567888888999999987
Q ss_pred HHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCC-eEEecCCCCCHHHHH-HhCCCCCHHHHHHHHHHHHhcCCeeEEEE
Q psy2378 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLN-ILGRTHDSKQAKYAIEIAKQYFNNFNLDL 772 (956)
Q Consensus 695 ~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~-risiGvQS~~d~~L~-~~~R~~~~~~~~~ai~~l~~~~~~i~~dl 772 (956)
+. + ...+++++++|+.+++|.++.|+++|++ +|++|+||+|+++|+ .+||+++.+++.++++.++++|+.++++|
T Consensus 99 ~~-~--~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~ 175 (313)
T TIGR01210 99 QR-D--NLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYL 175 (313)
T ss_pred hc-C--CcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 74 2 2348999999999999999999999998 899999999999995 89999999999999999999999999999
Q ss_pred eecCCC----CCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCC
Q psy2378 773 IYALPN----QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPS 822 (956)
Q Consensus 773 I~GlPg----qT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~ 822 (956)
|+|+|+ ||.+++.++++++.+++ +++++|++++.|||+++++ +.+.+|.
T Consensus 176 i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~ 231 (313)
T TIGR01210 176 LFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRGLYRPPW 231 (313)
T ss_pred EecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcCCCCCCC
Confidence 999995 67788999999999999 9999999999999997653 5666663
No 112
>PRK07094 biotin synthase; Provisional
Probab=99.85 E-value=3.1e-20 Score=208.21 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=165.9
Q ss_pred CCCcceeeeeeecccccCCcchHH-HHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKK-YLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~-~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||...+..+...+.+ ..+.++++++...+ ..++.++|.+|++..+..+++.++++.+++..+
T Consensus 46 s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~----~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~---- 117 (323)
T PRK07094 46 SNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE----LGYRTIVLQSGEDPYYTDEKIADIIKEIKKELD---- 117 (323)
T ss_pred CCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH----CCCCEEEEecCCCCCCCHHHHHHHHHHHHccCC----
Confidence 579999999998876544322221 46778877765433 347889998887555677888888888876422
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHH
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLS 782 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e 782 (956)
+.+..++...++|.++.|+++|++++++|+||+|+++++.++++++.+++.++++.+++.|+.++.++|+|+||||.+
T Consensus 118 --l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~e 195 (323)
T PRK07094 118 --VAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLE 195 (323)
T ss_pred --ceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHH
Confidence 233345667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy2378 783 ELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 839 (956)
Q Consensus 783 ~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 839 (956)
++.++++++.+++++.+.+++|+|.||||+++.. .++.++..+++..++.++..
T Consensus 196 d~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~---~~~~~~~~~~~a~~R~~lp~ 249 (323)
T PRK07094 196 DLADDILFLKELDLDMIGIGPFIPHPDTPLKDEK---GGSLELTLKVLALLRLLLPD 249 (323)
T ss_pred HHHHHHHHHHhCCCCeeeeeccccCCCCCcccCC---CCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999999998763 35566666666666666654
No 113
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.84 E-value=3.3e-20 Score=208.04 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=142.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
+.|+++||+|.+++++.++|+.++++|+|+||||++||... .+..|.. .++.+.+++++|++.+++||+||++.+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 58999999999999999999999999999999999997543 2334443 346788999999999999999999986
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc------------cccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEe
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN 210 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~------------~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~n 210 (956)
+++ ..++++.++++|+|+|++|.|... ..|++|. ...|..|++++++++.+ ++|||++
T Consensus 176 ~~~------~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~---~~~~~al~~v~~~~~~~-~ipIig~ 245 (334)
T PRK07565 176 FSN------LANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTP---AELRLPLRWIAILSGRV-GADLAAT 245 (334)
T ss_pred chh------HHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCc---hhhhHHHHHHHHHHhhc-CCCEEEE
Confidence 542 568899999999999999988521 0112221 22344678899999887 7999999
Q ss_pred cCCCCHHHHHHHhhh-cCEEEEccccccC-CcchHHHHHhh
Q psy2378 211 GGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLNY 249 (956)
Q Consensus 211 GgI~s~~da~~~l~~-ad~VmiGR~~l~~-P~l~~~i~~~~ 249 (956)
|||.|++|+.+++.. ||+||+||+++.+ |.++.++.+++
T Consensus 246 GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 246 TGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred CCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 999999999999988 9999999999995 99999888766
No 114
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.84 E-value=3.3e-20 Score=215.22 Aligned_cols=185 Identities=11% Similarity=0.042 Sum_probs=148.1
Q ss_pred cCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCC------------CCCC---HHH
Q psy2378 621 HYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP------------SLIS---DTG 685 (956)
Q Consensus 621 ~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtP------------s~L~---~~~ 685 (956)
+.-...||+.|+||..+..+|+ .+.+.++.|++|++.+.+. .++.+.|.+.+. ++-. ..+
T Consensus 143 v~isrGCp~~CsFC~ip~~~G~-~rsr~~e~Vv~Ei~~l~~~----g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~ 217 (440)
T PRK14862 143 LKISEGCNHRCTFCIIPSMRGD-LVSRPIGDVLREAERLVKA----GVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTR 217 (440)
T ss_pred EEeccCCCCCCccCCcccccCC-ccccCHHHHHHHHHHHHHC----CCceEEEEecChhhhccccccccccccccchhhH
Confidence 3456799999999998877764 4667799999999876542 234444432111 1111 356
Q ss_pred HHHHHHHHHHHcccCCCceeEEE-eCCCCCCHHHHHHHHHcCCC--eEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy2378 686 LDYLLKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSIIGIN--RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762 (956)
Q Consensus 686 l~~ll~~i~~~~~~~~~~eitle-~np~~it~e~L~~L~~~Gv~--risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~ 762 (956)
+..|++.+.+. ++ .+.+. +.|...++|++++|++ |+. .++||+||+++++|+.|+|+++.+++.++++.++
T Consensus 218 ~~~Ll~~l~~~-~~----~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr 291 (440)
T PRK14862 218 MTDLCEALGEL-GA----WVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWR 291 (440)
T ss_pred HHHHHHHHHhc-CC----EEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 77888887764 32 33433 4677778999999999 653 8999999999999999999999999999999999
Q ss_pred hc--CCeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 763 QY--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 763 ~~--~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
+. ++.+++|||+|+||||+++|++|++++.+++++++.+|.|+|+|||+.+++.
T Consensus 292 ~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~ 347 (440)
T PRK14862 292 EICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLP 347 (440)
T ss_pred HHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCC
Confidence 96 7789999999999999999999999999999999999999999999997654
No 115
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.83 E-value=9.3e-19 Score=191.22 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=147.8
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHcc----------------cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEec
Q psy2378 670 TIFIGGGTPSLISDTGLDYLLKNIKKLLL----------------FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIG 733 (956)
Q Consensus 670 ~i~fgggtPs~L~~~~l~~ll~~i~~~~~----------------~~~~~eitle~np~~it~e~L~~L~~~Gv~risiG 733 (956)
.+-|.|||++-++.+.-++++..+.+.++ .....-+|+|++|+.++++.++.|.+.|+++|.+|
T Consensus 136 EliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELG 215 (515)
T COG1243 136 ELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELG 215 (515)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEe
Confidence 35566789999999888888877777655 34445699999999999999999999999999999
Q ss_pred CCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHHHHHHHHHHHHccC---CCeEEEEeeeccCCc
Q psy2378 734 IQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYS---PPHLSLYSLTIEPNT 810 (956)
Q Consensus 734 vQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~---~~~i~~y~l~~~pgT 810 (956)
|||++|++|+.++|+|+.+++.+|.+++|++|+.++.++|.||||.+.+.-.++...+.+.+ ||.+.+||..+.+||
T Consensus 216 VQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT 295 (515)
T COG1243 216 VQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGT 295 (515)
T ss_pred eeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCc
Confidence 99999999999999999999999999999999999999999999999998888888888877 999999999999999
Q ss_pred ccccC---CCCCCCCHHHHHHHHHHHH
Q psy2378 811 YFFKY---PPLSMPSNDENAVMQDKIT 834 (956)
Q Consensus 811 ~l~~~---~~~~~~~~~~~~~~~~~~~ 834 (956)
+|+++ +.++..+.++..++...+.
T Consensus 296 ~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 296 ELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred hHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 98764 7788888888888777666
No 116
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.82 E-value=3.5e-19 Score=196.69 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=153.4
Q ss_pred ccCCCceEEccCcCcC------CHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCC-CHHHHH
Q psy2378 7 KYNKRKISIAPMMNLT------DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDN-EPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~t------d~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~-~~~~~~ 79 (956)
.| +.|+++|||++.+ +..++..+.++|. ..++++|.... .+.+.... +.|+.+||++. +++.+.
T Consensus 62 ~~-~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~-~~~~~~~~~~~-----~~~i~~~~--~~~~~~ql~~~~~~~~~~ 132 (299)
T cd02809 62 KL-AMPFGIAPTGLQGLAHPDGELATARAAAAAGI-PFTLSTVSTTS-----LEEVAAAA--PGPRWFQLYVPRDREITE 132 (299)
T ss_pred ec-CCCeeeCcccccccCCchHHHHHHHHHHHcCC-CEEecCCCcCC-----HHHHHHhc--CCCeEEEEeecCCHHHHH
Confidence 44 6699999998765 6689999999985 67788776321 11121222 27999999986 999999
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHH
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 159 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l 159 (956)
++++.+.+.|+|+|++|++||....+ ...++++++++.+++||++|... ..+.++.+
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~----------s~~~a~~a 189 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGIL----------TPEDALRA 189 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecC----------CHHHHHHH
Confidence 99999999999999999999975433 34478899999899999999652 13568999
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
+++|+|+|+++++.+ .+.+.++..|..+.++++.++ ++|||++|||.++.|+.+++.. ||+||+||
T Consensus 190 ~~~G~d~I~v~~~gG--------~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~---- 257 (299)
T cd02809 190 VDAGADGIVVSNHGG--------RQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR---- 257 (299)
T ss_pred HHCCCCEEEEcCCCC--------CCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH----
Confidence 999999999986542 122344678999999988774 5999999999999999999988 99999999
Q ss_pred CCcchHHH
Q psy2378 238 NPFLMSNF 245 (956)
Q Consensus 238 ~P~l~~~i 245 (956)
||++..+
T Consensus 258 -~~l~~~~ 264 (299)
T cd02809 258 -PFLYGLA 264 (299)
T ss_pred -HHHHHHH
Confidence 6666544
No 117
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.82 E-value=2.1e-19 Score=201.20 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=146.3
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~g-~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
+.|+|++|+| .++++|.+.|++++++|+|+||||++||.....+ +.|..+.++|+.+.+|+++|++.+.+||.||+.+
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r-~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP 191 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPER-KMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP 191 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcC-ccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC
Confidence 5799999977 8999999999999999999999999999865433 3688999999999999999999999999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc------c-----------ccCCCCCCCCCCcCcHHHHHHHHHhCC-
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------L-----------KKLNPKQNRKIPILKYNFVYNLKKDFP- 203 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~------~-----------~g~~~~~~~~~~~~~~~~i~~v~~~~~- 203 (956)
..++ ..++++.++++|+|+|++..+... . .+..|.......|..+..++++++.+.
T Consensus 192 n~t~------i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~ 265 (385)
T PLN02495 192 NITD------ITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKS 265 (385)
T ss_pred Chhh------HHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhh
Confidence 6653 578999999999999998654320 0 011111112223344455666666652
Q ss_pred ----CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC-CcchHHHHHhh
Q psy2378 204 ----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLNY 249 (956)
Q Consensus 204 ----~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~-P~l~~~i~~~~ 249 (956)
++|||++|||.|++||.+++.. |+.|+++.+++.+ |.++.++.+++
T Consensus 266 ~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L 317 (385)
T PLN02495 266 EFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAEL 317 (385)
T ss_pred hccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHH
Confidence 4999999999999999999998 9999999999998 99999998766
No 118
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.81 E-value=9.5e-19 Score=188.96 Aligned_cols=230 Identities=18% Similarity=0.255 Sum_probs=175.2
Q ss_pred ccccccCCCceEEccCcC-cCCHHHHHHHHHcCCCcEEEecccccccccCC-chhcccc---------------------
Q psy2378 3 MINSKYNKRKISIAPMMN-LTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-KKHCLDF--------------------- 59 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~-~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~-~~~~~~~--------------------- 59 (956)
+...+| +||+++|-=.. -+...++.+. ..| ++.+.|--+..+...|+ +-++.+.
T Consensus 6 ~~Gl~f-~NPl~lAaG~~~~~~~~~~~~~-~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~ 82 (310)
T COG0167 6 ILGLKF-PNPLGLAAGFDGKNGEELDALA-ALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFL 82 (310)
T ss_pred ecceec-CCCCeEcccCCccCHHHHHHHH-hcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHH
Confidence 456788 99999965444 2344444433 333 45666654444433211 1111111
Q ss_pred ----------CCCCCCEEEEecCCCHHHHHHHHHHHHHcC-CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHh
Q psy2378 60 ----------NAEEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128 (956)
Q Consensus 60 ----------~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G-~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 128 (956)
.+.+.+++....+...++|.+.+..+++++ +|.||+|.+||.. .+ |.++.++++.+.+++++|+
T Consensus 83 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt----~g-~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 83 EELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT----PG-GRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC----CC-hhhhccCHHHHHHHHHHHH
Confidence 123456889999999999999999999998 8999999999963 33 8888889999999999999
Q ss_pred hccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc----------------ccccCCCCCCCCCCcCcH
Q psy2378 129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA----------------FLKKLNPKQNRKIPILKY 192 (956)
Q Consensus 129 ~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~----------------~~~g~~~~~~~~~~~~~~ 192 (956)
+.+.+||.||+.+.+ +++.++|+.++++|+|+|++...+. ...|+|| ....|...
T Consensus 158 ~~~~~Pv~vKl~P~~------~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG---~~ikp~al 228 (310)
T COG0167 158 AATKVPVFVKLAPNI------TDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSG---PPLKPIAL 228 (310)
T ss_pred hcccCceEEEeCCCH------HHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCc---ccchHHHH
Confidence 999999999999832 3578999999999999999864221 1233443 45667788
Q ss_pred HHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC-CcchHHHHHhh
Q psy2378 193 NFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLNY 249 (956)
Q Consensus 193 ~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~-P~l~~~i~~~~ 249 (956)
++++++++.+. ++|||++|||.|++||.+++.. |+.|+++.+++.+ |+++.+|.+.+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l 288 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGL 288 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHH
Confidence 99999999862 4999999999999999999998 9999999999998 99999998765
No 119
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.81 E-value=1.4e-19 Score=201.53 Aligned_cols=182 Identities=14% Similarity=0.222 Sum_probs=149.3
Q ss_pred ccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecC--CCHHHHHH
Q psy2378 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD--NEPKKLAK 80 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g--~~~~~~~~ 80 (956)
|++..+ ++|+++|||+++||.+||.+|+++|+.++ ++++++.. .+++..|+.+||+| ++|+. ++
T Consensus 38 i~~~~l-~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~-------~~~~~~~~~~QI~g~~~~~~~-a~ 103 (369)
T TIGR01304 38 IDAYRF-ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWG-------RHEDPDPAIAKIAEAYEEGDQ-AA 103 (369)
T ss_pred Ecceec-CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHh-------cCCCHHHHHHHHhhcCCChHH-HH
Confidence 556677 88999999999999999999999997666 77777652 12334567799999 67777 99
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 160 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~ 160 (956)
+|+++++.+++. .+|+++.++++++|++. |+||+|++.. +..++++.++
T Consensus 104 aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~------~~~e~a~~l~ 152 (369)
T TIGR01304 104 ATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVSPQ------NAREIAPIVV 152 (369)
T ss_pred HHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecCCc------CHHHHHHHHH
Confidence 999999987765 37999999999999974 9999999532 2678999999
Q ss_pred HcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC
Q psy2378 161 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 161 ~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
++|+|+|++|+|+. .+++ ..+..+|..+.++++.. ++|||+ |+|.|.+++.++++. ||+||+||+.-..
T Consensus 153 eAGad~I~ihgrt~-~q~~------~sg~~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~~ 222 (369)
T TIGR01304 153 KAGADLLVIQGTLV-SAEH------VSTSGEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGANT 222 (369)
T ss_pred HCCCCEEEEeccch-hhhc------cCCCCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCcc
Confidence 99999999999984 2222 12235798899998888 799997 999999999999987 9999999988653
No 120
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.79 E-value=1.1e-18 Score=193.12 Aligned_cols=235 Identities=14% Similarity=0.079 Sum_probs=166.8
Q ss_pred ccccccCCCceEEccCcC-cCCHHHHHHHHHcCCCcEEEecccccccccC----------------------Cch----h
Q psy2378 3 MINSKYNKRKISIAPMMN-LTDRHCRMFHRQITRYSWLYTEMFTTQAILG----------------------NKK----H 55 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~-~td~~fR~~~~~~g~~~l~~tem~~~~~l~~----------------------~~~----~ 55 (956)
+...+| +||+++|-=.. -+...+|. +...| ++.++|--++.+.-.+ ..+ +
T Consensus 6 ~~Gl~l-~NPv~~AsG~~~~~~e~~~~-~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~ 82 (310)
T PRK02506 6 IAGFKF-DNCLMNAAGVYCMTKEELEE-VEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDY 82 (310)
T ss_pred ECCEEC-CCCCEeCCCCCCCCHHHHHH-HHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHH
Confidence 345688 99999886544 34456666 33454 5666665443332110 001 1
Q ss_pred ccccCC--CCCCEEEEecCCCHHHHHHHHHHHHHcC-CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC
Q psy2378 56 CLDFNA--EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 132 (956)
Q Consensus 56 ~~~~~~--~~~p~~vQl~g~~~~~~~~aA~~~~~~G-~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 132 (956)
+..... .+.|+++||.|.++++|.+.|+.++++| +|+||||++||... .|..+-.+++.+.+++++|++.+.
T Consensus 83 i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~~~ 157 (310)
T PRK02506 83 VLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTYFT 157 (310)
T ss_pred HHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHhcC
Confidence 111111 2589999999999999999999999998 89999999999632 255566789999999999999999
Q ss_pred ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccc------------ccc---cccCCCCCCCCCCcCcHHHHHH
Q psy2378 133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR------------NAF---LKKLNPKQNRKIPILKYNFVYN 197 (956)
Q Consensus 133 ~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r------------~~~---~~g~~~~~~~~~~~~~~~~i~~ 197 (956)
+||.||+++..+. .+..+.+..+.+.|++.|+...+ ... ..++.|.......|..+.++++
T Consensus 158 ~Pv~vKlsp~~~~----~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~ 233 (310)
T PRK02506 158 KPLGVKLPPYFDI----VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRA 233 (310)
T ss_pred CccEEecCCCCCH----HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHH
Confidence 9999999997632 12334444445667776543321 111 1112222333455667889999
Q ss_pred HHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHhh
Q psy2378 198 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 249 (956)
Q Consensus 198 v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~~ 249 (956)
+++.++ ++|||++|||.|++|+.+++.. ||+||++.+++. +|.++.++.+++
T Consensus 234 ~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 234 FYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHH
Confidence 988874 6999999999999999999988 999999999887 899999998766
No 121
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.79 E-value=2.5e-18 Score=176.89 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=153.4
Q ss_pred eeeeeecccccCCc-chHHHHHH-HHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCceeEE
Q psy2378 630 INEAIELVKSFGNI-DEKKYLEA-LLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITL 707 (956)
Q Consensus 630 ~Ce~C~l~k~~~~~-~~~~~v~~-vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~eitl 707 (956)
-|+||..+..-... .....+.. +-+++++..+.++..+ =-+||...|.+..+.+-|++..+.... ......+++
T Consensus 45 GCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k-yiaYFQ~~TNTyApvevLre~ye~aL~---~~~VVGLsI 120 (312)
T COG1242 45 GCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGK-YIAYFQAYTNTYAPVEVLREMYEQALS---EAGVVGLSI 120 (312)
T ss_pred ceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCc-EEEEEeccccccCcHHHHHHHHHHHhC---cCCeeEEee
Confidence 69999765442111 11212332 3333443333343333 457899999999998888887766543 355678899
Q ss_pred EeCCCCCCHHHHHHHHHcC---CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHHHH
Q psy2378 708 EANPSTFEIEKFHSYSIIG---INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL 784 (956)
Q Consensus 708 e~np~~it~e~L~~L~~~G---v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e~~ 784 (956)
-++|+.+.++.+++|++.. --+|.+|+||.++++|+.+||+|+.+.+.+++..+|+.++.|..++|+||||||.+++
T Consensus 121 gTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~m 200 (312)
T COG1242 121 GTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEM 200 (312)
T ss_pred cCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHH
Confidence 9999999999999998865 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCeEEEEeeeccCCcccccC---CCCCCCCHHHHH
Q psy2378 785 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENA 827 (956)
Q Consensus 785 ~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~---~~~~~~~~~~~~ 827 (956)
.+|++.+..++++.|.+++|.+.+||++.++ +++...+.++..
T Consensus 201 leTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv 246 (312)
T COG1242 201 LETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYV 246 (312)
T ss_pred HHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHH
Confidence 9999999999999999999999999998664 566666666643
No 122
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.79 E-value=3.1e-19 Score=174.17 Aligned_cols=130 Identities=34% Similarity=0.545 Sum_probs=120.5
Q ss_pred CccHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhh-ccCccccCHHHH
Q psy2378 530 TPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEY 608 (956)
Q Consensus 530 ~~r~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~-~~~~~rl~~~~~ 608 (956)
|+|+++|+.|+|+||+++..+.+++++++.......+++.|++|+++||+|+++|+..||++|++++ +|++++++++++
T Consensus 1 ~~r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l~~~~~~~l~~~~~ 80 (137)
T PRK00202 1 AARRKAREAAVQALYQWELSGNDIAEIIEAQLLEEQYDKADPAYFRSLVRGVVENQAELDELISPYLKDWTLERLDPVER 80 (137)
T ss_pred CchHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHhhHHHH
Confidence 5789999999999999999999999888776665567889999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhh
Q psy2378 609 VVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELS 659 (956)
Q Consensus 609 ~iLr~~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~ 659 (956)
+|||+|+||++|++++|+.+.+++++++++.++.....+|+|+||+.+.+.
T Consensus 81 ~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 131 (137)
T PRK00202 81 AILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKE 131 (137)
T ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 999999999999868999999999999999998888899999999998754
No 123
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.78 E-value=3.9e-19 Score=172.85 Aligned_cols=132 Identities=32% Similarity=0.490 Sum_probs=113.0
Q ss_pred ccCccHHHHHHHHHHHHHhhcCCC-CHHHHH----HHHHH-hcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhc-cCc
Q psy2378 528 NKTPRHRAREFALQGIYQWLFNNM-DVNLIE----TYIKE-ISNFYKVDKKYFYLILRGVINDINFLRYDLSLIID-RSI 600 (956)
Q Consensus 528 ~~~~r~~~R~~a~~~L~~~~~~~~-~~~~~~----~~~~~-~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~-~~~ 600 (956)
.+++|+++|+.|+|+||+++..+. ..+.+. ..+.. .......+..|+.+|+.||.+|+..||.+|+++++ |++
T Consensus 6 ~~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~ 85 (151)
T COG0781 6 PKLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPHLKKWSL 85 (151)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 357899999999999999999665 323333 23222 11222278899999999999999999999999995 999
Q ss_pred cccCHHHHHHHHHHHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhh
Q psy2378 601 NELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELS 659 (956)
Q Consensus 601 ~rl~~~~~~iLr~~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~ 659 (956)
+||++++|+|||+|+||++|..++|..+.++|+++++|.|+...+.+|+|+||+.+...
T Consensus 86 ~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~ 144 (151)
T COG0781 86 ERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKK 144 (151)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999998654
No 124
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.78 E-value=3.3e-18 Score=190.70 Aligned_cols=228 Identities=15% Similarity=0.188 Sum_probs=167.3
Q ss_pred cccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCC------------------------chhc---
Q psy2378 4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN------------------------KKHC--- 56 (956)
Q Consensus 4 ~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~------------------------~~~~--- 56 (956)
...+| +||+++|-=..-+....+.+. ..| +|.+++--++.+.-.++ .+.+
T Consensus 51 ~Gl~l-~NPi~lAsG~~~~~~~~~~~~-~~G-~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~ 127 (335)
T TIGR01036 51 LGLKF-PNPLGLAAGFDKDGEAIDALG-AMG-FGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVER 127 (335)
T ss_pred CCEEC-CCCcEeCCccCCCHHHHHHHH-hcC-CCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHH
Confidence 34677 999988533222233455543 335 57777665544322210 0001
Q ss_pred cccCCCCCCEEEEecCC-------CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhh
Q psy2378 57 LDFNAEEHPIAFQVGDN-------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129 (956)
Q Consensus 57 ~~~~~~~~p~~vQl~g~-------~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 129 (956)
+.....+.|+++++.++ .+++|++.++.+.+ .+|+||||.+||... |.....+++.+.+++++|++
T Consensus 128 i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~ 200 (335)
T TIGR01036 128 LKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQ 200 (335)
T ss_pred HhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHH
Confidence 11133467999999877 57899999998877 499999999999642 34556889999999999999
Q ss_pred ccC-------ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc------------ccccCCCCCCCCCCcC
Q psy2378 130 SVE-------IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------FLKKLNPKQNRKIPIL 190 (956)
Q Consensus 130 ~~~-------~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~------------~~~g~~~~~~~~~~~~ 190 (956)
.++ +||.||+.+.++. ++..++++.++++|+|+|++..+.. ...|+||+ ...|.
T Consensus 201 ~~~~~~~~~~~Pv~vKLsP~~~~----~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~---~i~p~ 273 (335)
T TIGR01036 201 EQDGLRRVHRVPVLVKIAPDLTE----SDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGK---PLQDK 273 (335)
T ss_pred HHHhhhhccCCceEEEeCCCCCH----HHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCH---HHHHH
Confidence 886 9999999997763 2477899999999999999875432 12233332 33345
Q ss_pred cHHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHh
Q psy2378 191 KYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 248 (956)
Q Consensus 191 ~~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~ 248 (956)
.+++++++++.++ ++|||++|||.|++|+.+++.. ||.|++|++++. +|+++.++.++
T Consensus 274 al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 274 STEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHHhh
Confidence 6788999988764 5999999999999999999998 999999999977 69999998864
No 125
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.77 E-value=2.4e-17 Score=172.62 Aligned_cols=192 Identities=28% Similarity=0.399 Sum_probs=166.4
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccccc-ceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNR-KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~-~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||......+. .....++.+.+++.......... .+..++|+||+|...+...+..+++.+++.......
T Consensus 8 t~~C~~~C~yC~~~~~~~~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (216)
T smart00729 8 TRGCPRRCTFCSFPSARGK-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADD 86 (216)
T ss_pred cCchhccCCcCCcCccccc-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999987665444 55666788888887663322111 368899999999998887799999999887543334
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC-CeeEEEEeecCCCCCH
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTL 781 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~-~~i~~dlI~GlPgqT~ 781 (956)
..+++.+|+..++++.++.|+++|+.+++++++|++++..+.++++.+.+++.++++.+++.| ..+.+.+|+|+|+++.
T Consensus 87 ~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~ 166 (216)
T smart00729 87 VEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETE 166 (216)
T ss_pred eEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCH
Confidence 678888998889999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEEeeeccCCcccccCC
Q psy2378 782 SELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 782 e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
+++.+.++++.+++++++.++++.|.|||+++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 167 EDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred HHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999999999999998875
No 126
>PRK06455 riboflavin synthase; Provisional
Probab=99.77 E-value=2.8e-19 Score=170.99 Aligned_cols=79 Identities=22% Similarity=0.419 Sum_probs=70.3
Q ss_pred ccccccccc----CceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEE
Q psy2378 414 DGTMARAQE----KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 489 (956)
Q Consensus 414 ~g~~~~~~e----~~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~ 489 (956)
+|+.+.+++ .+|.+++|||+||||+++++|+++++|||||||||| |+|+||||||+++++|||++|+++++||+
T Consensus 18 ~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~V--G~t~h~d~Va~~vS~GL~~lsL~t~~PVi 95 (155)
T PRK06455 18 SAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMP--GPTEKDKYCAHEASIGLIMAQLMTNKHII 95 (155)
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecce--eccCcchhHHHHHHHHHHHHHhhhCCCEE
Confidence 355444443 468999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred EEecC
Q psy2378 490 NAILT 494 (956)
Q Consensus 490 ~gvlt 494 (956)
+--+.
T Consensus 96 ~v~vh 100 (155)
T PRK06455 96 EVFVH 100 (155)
T ss_pred EEEec
Confidence 96554
No 127
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.77 E-value=3.3e-19 Score=173.50 Aligned_cols=125 Identities=28% Similarity=0.425 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhh-ccCccccC
Q psy2378 533 HRAREFALQGIYQWLFNNMD-------VNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELS 604 (956)
Q Consensus 533 ~~~R~~a~~~L~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~-~~~~~rl~ 604 (956)
|++|+.|+|+||+++.++.. .+..++.......++++|++|+++|++|+++|+..||++|++++ +|+++|++
T Consensus 1 ~~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~~~~~~~~rl~ 80 (134)
T PF01029_consen 1 RKARELALQALYQVEFNDEEDEEEGQFLDEALEEELEESELSEEDRAFARELVYGVLRNKEELDALISKLLKNWPLERLP 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHHTSTSSTGGGSG
T ss_pred ChHHHHHHHHHHHHHccCCchhhhhhhHHHHHhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 58999999999999666555 33333333345678899999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHh
Q psy2378 605 SIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVE 657 (956)
Q Consensus 605 ~~~~~iLr~~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~ 657 (956)
+++++|||+|+|||+|++++|..+.++++++++|.++.....+|+|+||+.+.
T Consensus 81 ~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~ 133 (134)
T PF01029_consen 81 PVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIA 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhh
Confidence 99999999999999998899999999999999999999999999999999875
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.76 E-value=2.7e-18 Score=199.06 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHH
Q psy2378 534 RAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLI 613 (956)
Q Consensus 534 ~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~ 613 (956)
++|+.|+|+||+++.++.+++.+++.... .++++|++|+++||+||++|+..||++|+++++|+++++++++++|||+
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~~~--~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~~~~l~~~~r~iLrl 80 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPALQQ--KVSDKDRALLQELCYGVLRRLPRLEWLIAQLLAKPLKGKQRIVHALLLV 80 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCccccCHHHHHHHHH
Confidence 68999999999999999999988887654 4778899999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHH
Q psy2378 614 GTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 693 (956)
Q Consensus 614 ~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i 693 (956)
|+|||+|++ +|+.+.++++++++|.++.....+|+|+||+.+.+..+...........+.++.|.|+...|...+.+..
T Consensus 81 a~yell~~~-iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~~~~~ 159 (427)
T PRK10901 81 GLYQLLYTR-IPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAYPEQW 159 (427)
T ss_pred HHHHHhccC-CCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHhHHHH
Confidence 999999975 9999999999999999998889999999999987642211111123455667899999888887775443
Q ss_pred HHHc-ccCCCceeEEEeCCCCCCHH-HHHHHHHcCCC
Q psy2378 694 KKLL-LFKKNISITLEANPSTFEIE-KFHSYSIIGIN 728 (956)
Q Consensus 694 ~~~~-~~~~~~eitle~np~~it~e-~L~~L~~~Gv~ 728 (956)
.+.+ ..+..+++++++|+...+.+ .++.|.+.|+.
T Consensus 160 ~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~ 196 (427)
T PRK10901 160 QAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIE 196 (427)
T ss_pred HHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCc
Confidence 3322 23445688999999877654 56788887753
No 129
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.76 E-value=2e-18 Score=166.86 Aligned_cols=127 Identities=35% Similarity=0.594 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhh-ccCccccCHHHHHH
Q psy2378 532 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYVV 610 (956)
Q Consensus 532 r~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~-~~~~~rl~~~~~~i 610 (956)
|+++|+.|+++||+++..+.+++.+++.......++++|++|++++++|+++|+..||++|++++ +|+++++++++++|
T Consensus 1 ~~~~R~~a~~~l~~~~~~~~~~~~~l~~~~~~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~~~~~~~~l~~~~~~i 80 (129)
T TIGR01951 1 RRKARELALQALYQWELSGNDVEEIIEEFLEERELDEEDREYFLELVRGVLENQEEIDELISPHLKDWSLERLDPVDRAI 80 (129)
T ss_pred ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHhhHHHHHH
Confidence 46789999999999999999999888887666668889999999999999999999999999999 79999999999999
Q ss_pred HHHHHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhh
Q psy2378 611 LLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVEL 658 (956)
Q Consensus 611 Lr~~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~ 658 (956)
||+|+||++|++++|..+.+++++++++.++.....+|+|+||+.+.+
T Consensus 81 Lr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r 128 (129)
T TIGR01951 81 LRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAK 128 (129)
T ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhh
Confidence 999999999976799999999999999998888889999999998753
No 130
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.75 E-value=2.7e-18 Score=166.09 Aligned_cols=127 Identities=28% Similarity=0.448 Sum_probs=116.8
Q ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhh-ccCccccCHHHHHH
Q psy2378 532 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYVV 610 (956)
Q Consensus 532 r~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~-~~~~~rl~~~~~~i 610 (956)
|+.+|+.|+|+||+++..+.+.+++++.......+++.|++|+++||+|+++|+..||++|++++ +|+++++++++++|
T Consensus 1 r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l~~~~~~~l~~~~~~i 80 (130)
T cd00619 1 RRRARELAVQALYAWELAPEILAEVVSLLELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVERAI 80 (130)
T ss_pred ChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHccCCCHHHhhHHHHHH
Confidence 57899999999999999999999888876655556788999999999999999999999999999 58899999999999
Q ss_pred HHHHHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhh
Q psy2378 611 LLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVEL 658 (956)
Q Consensus 611 Lr~~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~ 658 (956)
||+|+||++|++.+|+.+.+++++++++.++.....+|+|+||+.+.+
T Consensus 81 Lria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r 128 (130)
T cd00619 81 LRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAK 128 (130)
T ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhh
Confidence 999999999987799999999999999999988889999999998853
No 131
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.75 E-value=1.1e-17 Score=184.85 Aligned_cols=174 Identities=21% Similarity=0.327 Sum_probs=137.7
Q ss_pred CCCEEEEecCCC---HHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe
Q psy2378 63 EHPIAFQVGDNE---PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 139 (956)
Q Consensus 63 ~~p~~vQl~g~~---~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 139 (956)
..|+++++.|.+ .++|++.|+.++ +|+|+||||++||... .+..+..+++...++++.+++.+++||.||+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL 169 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKL 169 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEe
Confidence 469999999999 999999999888 7899999999999643 3556777899999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc----------------ccccCCCCCCCCCCcCcHHHHHHHHHhCC
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA----------------FLKKLNPKQNRKIPILKYNFVYNLKKDFP 203 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~----------------~~~g~~~~~~~~~~~~~~~~i~~v~~~~~ 203 (956)
....++.. ....+..+.+.|+++|+...+.. ...|++|+ ...|..+.+++++++.++
T Consensus 170 ~p~~~~~~----~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~---~i~p~aL~~V~~~~~~~~ 242 (295)
T PF01180_consen 170 SPNFTDIE----PFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGP---AIRPIALRWVRELRKALG 242 (295)
T ss_dssp -STSSCHH----HHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEG---GGHHHHHHHHHHHHHHTT
T ss_pred cCCCCchH----HHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCch---hhhhHHHHHHHHHHhccc
Confidence 99766532 34567777799999999543321 11223332 333557789999999984
Q ss_pred -CceEEEecCCCCHHHHHHHhhh-cCEEEEcccc-ccCCcchHHHHHhh
Q psy2378 204 -ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLNY 249 (956)
Q Consensus 204 -~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~-l~~P~l~~~i~~~~ 249 (956)
++|||++|||.|++|+.+++.. ||.|+++.++ ..+|+++.++.+++
T Consensus 243 ~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L 291 (295)
T PF01180_consen 243 QDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINREL 291 (295)
T ss_dssp TSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHH
T ss_pred cceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHH
Confidence 5999999999999999999999 9999999999 77999999998765
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.73 E-value=5.7e-18 Score=196.77 Aligned_cols=194 Identities=17% Similarity=0.169 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHH
Q psy2378 534 RAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLI 613 (956)
Q Consensus 534 ~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~ 613 (956)
++|+.|+|+||+++. +.+++.+++.......++++|++|+++||+||++|+..||++|+++++|++.++++.+|+|||+
T Consensus 2 ~~R~~A~~~L~~i~~-~~~~~~~l~~~~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~~~~~~l~~~~r~iLrl 80 (434)
T PRK14901 2 NARQLAWEILQAVAR-GAYADVALERVLRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLGKKPAHKQPPDLRWLLHL 80 (434)
T ss_pred CHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhcCHHHHHHHHH
Confidence 479999999999998 5888888888777777888999999999999999999999999999998889999999999999
Q ss_pred HHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccc-----ccccceeEEEecCCCCCCCCHHHHHH
Q psy2378 614 GTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPI-----ILNRKIHTIFIGGGTPSLISDTGLDY 688 (956)
Q Consensus 614 ~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~-----~~~~~i~~i~fgggtPs~L~~~~l~~ 688 (956)
|+|||+|++.+|..++++++++++|.++.....+|+|+||+.+.+..+. ........+.+.++.|.|+...+...
T Consensus 81 a~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~ 160 (434)
T PRK14901 81 GLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLWLEW 160 (434)
T ss_pred HHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHHHHH
Confidence 9999999888999999999999999998888889999999998764321 01111233556678899998887776
Q ss_pred HH-HHHHHHc-ccCCCceeEEEeCCCCCCHH-HHHHHHHcCCC
Q psy2378 689 LL-KNIKKLL-LFKKNISITLEANPSTFEIE-KFHSYSIIGIN 728 (956)
Q Consensus 689 ll-~~i~~~~-~~~~~~eitle~np~~it~e-~L~~L~~~Gv~ 728 (956)
+. +...+.+ .++..+++++++|+...+.+ ..+.|.+.|+.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~ 203 (434)
T PRK14901 161 LGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGIT 203 (434)
T ss_pred hCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCc
Confidence 63 3222222 23445689999999988764 56788888875
No 133
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.71 E-value=2.3e-17 Score=192.25 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHH
Q psy2378 534 RAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLI 613 (956)
Q Consensus 534 ~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~ 613 (956)
++|+.|+|+||+++..+.+++.+++.+.....+++.|++|+++||+||++|+..||++|+++++|+++++++++|++||+
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~~~~~rl~~~~r~iLrl 82 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRMLERSSLERNDRALATELVNGVLRYRLQLDFIISRFYHHDLEKAAPVLKNILRL 82 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHH
Confidence 68999999999999999999988888877777888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccc-----cceeEEEecCCCCCCCCHHHHHH
Q psy2378 614 GTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILN-----RKIHTIFIGGGTPSLISDTGLDY 688 (956)
Q Consensus 614 ~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~-----~~i~~i~fgggtPs~L~~~~l~~ 688 (956)
|+|||+|++.+|+.+.+++++++++.++.....+|+|+||+.+.+....... .....+...++.|.|+...+...
T Consensus 83 a~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~ 162 (445)
T PRK14904 83 GVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLERWIAR 162 (445)
T ss_pred HHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999888999999999999999998888899999999998764211110 11122445568899998887777
Q ss_pred HH-HHHHHHc-ccCCCceeEEEeCCCCCCHH-HHHHHHHcCCCe
Q psy2378 689 LL-KNIKKLL-LFKKNISITLEANPSTFEIE-KFHSYSIIGINR 729 (956)
Q Consensus 689 ll-~~i~~~~-~~~~~~eitle~np~~it~e-~L~~L~~~Gv~r 729 (956)
+- +...+.+ ..+..+.+++++|+...+.+ +++.|...|+..
T Consensus 163 ~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~ 206 (445)
T PRK14904 163 YGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTF 206 (445)
T ss_pred hChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCce
Confidence 63 2222222 12344578899999877654 567777777653
No 134
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.71 E-value=1.9e-17 Score=159.18 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHH
Q psy2378 534 RAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLI 613 (956)
Q Consensus 534 ~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~ 613 (956)
++|+.|+|+||+++.++.+++.++........ ++.|++|+++|++|+++|+..||++|+++++|++.++++++++|||+
T Consensus 2 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~~~~~~~~~~~~~iLr~ 80 (126)
T cd00620 2 NARSTAAEVLRDVLQRGASLNAVLSALQKKDK-SDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRNLLRL 80 (126)
T ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCccccCHHHHHHHHH
Confidence 46999999999999999999988887665433 67899999999999999999999999999988778999999999999
Q ss_pred HHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhh
Q psy2378 614 GTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVEL 658 (956)
Q Consensus 614 ~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~ 658 (956)
|+|||+|++ +|+.+.+++++++++.++.....+|+|+||+.+.+
T Consensus 81 a~~el~~~~-~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r 124 (126)
T cd00620 81 GLYQLLYLD-VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFER 124 (126)
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhc
Confidence 999999976 99999999999999999888889999999999864
No 135
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.70 E-value=3.7e-17 Score=190.85 Aligned_cols=194 Identities=21% Similarity=0.240 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHH
Q psy2378 534 RAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLI 613 (956)
Q Consensus 534 ~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~ 613 (956)
++|+.|+|+||+++..+.+++++++.++....++++|++|+++||+|+++++..||++|++++++ ++++++++|+|||+
T Consensus 4 ~~R~~A~~~L~~~~~~~~~~~~~l~~~~~~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~~-~~~l~~~~r~iLrl 82 (444)
T PRK14902 4 NARELALEVLIKVENNGAYSNIALNKVLKKSELSDKDKALLTELVYGTIQRKLTLDYYLAPFIKK-RKKLDPWVRNLLRM 82 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-hhhCCHHHHHHHHH
Confidence 78999999999999999999999988877777889999999999999999999999999999987 89999999999999
Q ss_pred HHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhc-cccc--ccceeEEEecCCCCCCCCHHHHHHHH
Q psy2378 614 GTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSL-PIIL--NRKIHTIFIGGGTPSLISDTGLDYLL 690 (956)
Q Consensus 614 ~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~-~~~~--~~~i~~i~fgggtPs~L~~~~l~~ll 690 (956)
|+|||+|++++|+.+.+++++++++.++.....+|+|+||+.+.+.. .... ......+.+..+.|.|+...+...+-
T Consensus 83 a~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~~~g 162 (444)
T PRK14902 83 SLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWIDQYG 162 (444)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHHHhC
Confidence 99999998889999999999999999988888999999999997642 1000 11122344556789998887776652
Q ss_pred -HHHHHHc-ccCCCceeEEEeCCCCCCH-HHHHHHHHcCCC
Q psy2378 691 -KNIKKLL-LFKKNISITLEANPSTFEI-EKFHSYSIIGIN 728 (956)
Q Consensus 691 -~~i~~~~-~~~~~~eitle~np~~it~-e~L~~L~~~Gv~ 728 (956)
+...+.+ .+...+..++++|+...+. +.++.|.+.|++
T Consensus 163 ~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~ 203 (444)
T PRK14902 163 EEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYE 203 (444)
T ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCce
Confidence 2222222 2334568899999987765 456788888864
No 136
>PLN02826 dihydroorotate dehydrogenase
Probab=99.69 E-value=9.4e-16 Score=173.80 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=138.6
Q ss_pred CEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhc---------
Q psy2378 65 PIAFQVGDN-----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS--------- 130 (956)
Q Consensus 65 p~~vQl~g~-----~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~--------- 130 (956)
|++++|+++ .+++|++.++.+.+. +|.||||.+||... |..-+.+++.+.+++++|++.
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 899999877 589999999998874 89999999999642 334567899999999999754
Q ss_pred cCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc-------------ccccCCCCCCCCCCcCcHHHHHH
Q psy2378 131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------FLKKLNPKQNRKIPILKYNFVYN 197 (956)
Q Consensus 131 ~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~-------------~~~g~~~~~~~~~~~~~~~~i~~ 197 (956)
..+||.||+.+..++ +++.++++.++++|+|.|++..++. ...|+||+ ...+...+++++
T Consensus 261 ~~~Pv~vKlaPdl~~----~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~---pl~~~sl~~v~~ 333 (409)
T PLN02826 261 GPPPLLVKIAPDLSK----EDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGK---PLFDLSTEVLRE 333 (409)
T ss_pred cCCceEEecCCCCCH----HHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCc---cccHHHHHHHHH
Confidence 468999999886553 3478899999999999999976431 12233333 233456788999
Q ss_pred HHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc-CCcchHHHHHhh
Q psy2378 198 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 249 (956)
Q Consensus 198 v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~-~P~l~~~i~~~~ 249 (956)
+++.++ ++|||++|||.|++|+.+++.. |+.|+++++++. .|+++.++++++
T Consensus 334 l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL 388 (409)
T PLN02826 334 MYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAEL 388 (409)
T ss_pred HHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHH
Confidence 988774 5999999999999999999998 999999999877 599999998765
No 137
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.68 E-value=1.6e-15 Score=168.29 Aligned_cols=202 Identities=11% Similarity=0.037 Sum_probs=150.5
Q ss_pred CCCCcceeeeeeecccccC---CcchHHHHHHHHHHHhhhcccccccceeEEEe--cCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 623 KIPYKVIINEAIELVKSFG---NIDEKKYLEALLIDVELSLPIILNRKIHTIFI--GGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~---~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~f--gggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
....|+..|.||..++.+. .....+.++.++++++...+ ..++.+++ +|+.|.. .....+++.+.+..
T Consensus 35 ~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~~~l~~~g~~~~~---~~~~~~~~~i~~~~ 107 (296)
T TIGR00433 35 KSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA----AGATRFCLVASGRGPKD---REFMEYVEAMVQIV 107 (296)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH----CCCCEEEEEEecCCCCh---HHHHHHHHHHHHHH
Confidence 3679999999998766542 12233446788888876433 23455543 3444432 22233333333321
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCC
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALP 777 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlP 777 (956)
. .. .+.+.+++..+++|.++.|+++|++++++|+| +++++++.++++++.++..++++.+++.|+.++..+|+|+
T Consensus 108 ~-~~--~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl- 182 (296)
T TIGR00433 108 E-EM--GLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL- 182 (296)
T ss_pred H-hC--CCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-
Confidence 1 01 23334566778999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 839 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 839 (956)
+||.+++.++++++.+++++.+.++.+.|.|||++++. ..++.++..+....++..+..
T Consensus 183 ~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~---~~~s~~~~~~~ia~~r~~lp~ 241 (296)
T TIGR00433 183 GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADN---KELSADDALKTIALARIIMPK 241 (296)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCC---CCCCHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999863 345666666666666555543
No 138
>PRK06256 biotin synthase; Validated
Probab=99.67 E-value=1.5e-15 Score=171.29 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=152.0
Q ss_pred CCCCcceeeeeeecccccCCc---chHHHHHHHHHHHhhhcccccccceeEEEe--cCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 623 KIPYKVIINEAIELVKSFGNI---DEKKYLEALLIDVELSLPIILNRKIHTIFI--GGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~---~~~~~v~~vl~eI~~~~~~~~~~~i~~i~f--gggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
....|+..|.||.....++.. .....++.++++++...+. .+..+.+ +|..|.....+++.++++.+++..
T Consensus 64 ~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~ 139 (336)
T PRK06256 64 KSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE----GAGTFCIVASGRGPSGKEVDQVVEAVKAIKEET 139 (336)
T ss_pred cCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC----CCCEEEEEecCCCCCchHHHHHHHHHHHHHhcC
Confidence 368999999999887654321 2234568888888765432 2333333 344454322245556666665542
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCC
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALP 777 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlP 777 (956)
.+.+.++...+++|.++.|+++|+.++.+|+|| ++++++.+++.++.++..++++.+++.|+.+++++|+|+
T Consensus 140 ------~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl- 211 (336)
T PRK06256 140 ------DLEICACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM- 211 (336)
T ss_pred ------CCcEEecCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-
Confidence 233345566789999999999999999999999 999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
|||.+++.+++.++.+++++.+.++.++|.||||++... .++.++..+.....+-.+
T Consensus 212 gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~---~~~~~e~l~~ia~~Rl~~ 268 (336)
T PRK06256 212 GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHP---ELTPLECLKTIAIFRLIN 268 (336)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCC---CCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999997653 345555555544444333
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.64 E-value=5.5e-16 Score=179.89 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHHHH
Q psy2378 536 REFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLIGT 615 (956)
Q Consensus 536 R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~~~ 615 (956)
|+.|+|+||+++.++.+++.++.. ...++++|++|+++||+||++|+..||++|+++++|++++++++.+ +||+++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~---~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~~~~l~~~~~-~L~~~~ 76 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL---QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMDRPMKGKPRTVH-YLILVG 76 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCccccCHHHH-HHHHHH
Confidence 789999999999988777765554 3457789999999999999999999999999999999999998877 889889
Q ss_pred HhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy2378 616 YELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 616 yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~ 695 (956)
||++|..++|+.++++++++++|.++.....+|+|+||+.+.+..+.. ...+..+.+.++.|.|+...+...+.+...+
T Consensus 77 ~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~-~~~~~~l~~~~s~P~wl~~~~~~~~~~~~~~ 155 (426)
T TIGR00563 77 LYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEEL-LAEFNALDARYLHPEWLVKRLQKAYPGQWQS 155 (426)
T ss_pred HHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhh-cchhHhHHHHcCCCHHHHHHHHHHhHHHHHH
Confidence 998887789999999999999999988888999999999997643211 1123446667789999988777766444333
Q ss_pred Hc-ccCCCceeEEEeCCCCCCH-HHHHHHHHcCCC
Q psy2378 696 LL-LFKKNISITLEANPSTFEI-EKFHSYSIIGIN 728 (956)
Q Consensus 696 ~~-~~~~~~eitle~np~~it~-e~L~~L~~~Gv~ 728 (956)
.+ ..+..+..++++||...+. +.++.|.+.|+.
T Consensus 156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~ 190 (426)
T TIGR00563 156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMK 190 (426)
T ss_pred HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCc
Confidence 22 1234468899999987765 557888888864
No 140
>PRK00955 hypothetical protein; Provisional
Probab=99.64 E-value=1.8e-15 Score=177.18 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=132.4
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEE-ecCCCC----------------------
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIF-IGGGTP---------------------- 678 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~-fgggtP---------------------- 678 (956)
.-...|+..|+||.++...|+..+.+.++.|++|++...+..+-..+ |. +||-|-
T Consensus 297 ~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~--I~DlgGptan~Yg~~c~~~~~~~~c~~~~cl 374 (620)
T PRK00955 297 TSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGY--IHDVGGPTANFRKMACKKQLKCGACKNKQCL 374 (620)
T ss_pred EeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEE--EEeCCCCCccccccccccccccccccccccc
Confidence 34578999999999998888776778899999999887543110111 11 222111
Q ss_pred ------CC-CCHHHHHHHHHHHHHHcccCCCceeEEEeCCCC----CCHHHHHHHHHcCC-CeEEecCCCCCHHHHHHhC
Q psy2378 679 ------SL-ISDTGLDYLLKNIKKLLLFKKNISITLEANPST----FEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILG 746 (956)
Q Consensus 679 ------s~-L~~~~l~~ll~~i~~~~~~~~~~eitle~np~~----it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~~~ 746 (956)
++ .+...+..|++.+.+.-.+. ...++.-++.+. .+++.++.|.+..+ ..+.||+||+++++|+.|+
T Consensus 375 fp~~c~nl~~d~~~l~~LLr~l~~l~gvk-rv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~ 453 (620)
T PRK00955 375 FPKPCKNLDVDHKEYLELLRKVRKLPGVK-KVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMG 453 (620)
T ss_pred cCccccccCcChHHHHHHHHHHhccCCce-EEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhC
Confidence 11 12345666777776531111 122222223333 24557777766543 4799999999999999999
Q ss_pred CCCCHHHHHHHH----HHHHhcCCe--eEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC
Q psy2378 747 RTHDSKQAKYAI----EIAKQYFNN--FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 747 R~~~~~~~~~ai----~~l~~~~~~--i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~ 815 (956)
|+ +.+.+.+.+ +.+++.++. +..|||+|+||||+++|+++++++.+++++.++++.|+|+|||+...+
T Consensus 454 K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~M 527 (620)
T PRK00955 454 KP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTTM 527 (620)
T ss_pred CC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhhc
Confidence 98 555555444 344445554 899999999999999999999999999999999999999999997765
No 141
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.62 E-value=1.8e-15 Score=174.96 Aligned_cols=182 Identities=15% Similarity=0.235 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhhccCccccCHHHHHHHHH
Q psy2378 534 RAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLI 613 (956)
Q Consensus 534 ~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~~~~~~rl~~~~~~iLr~ 613 (956)
++|+.|+++|+++...+.+++.+++..+. .++++|++|+++||+||++++..||++|+++++.. ++++++|++||+
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~~--~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~~~--~l~~~~r~iLr~ 79 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSVLS--FLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK--DIPPAVRVALRM 79 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Confidence 68999999999999999999988877654 58899999999999999999999999999998532 699999999999
Q ss_pred HHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHH-HH
Q psy2378 614 GTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLL-KN 692 (956)
Q Consensus 614 ~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll-~~ 692 (956)
|+|||+|++..|..++++++++++|.. ...+|+|+||+.+.+..+ ...+.+.++.|.|+...|...+- +.
T Consensus 80 ~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~~------~~~l~~~~s~P~wl~~~~~~~~g~~~ 150 (431)
T PRK14903 80 GAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVPE------PKELHLKYSHPKWLVNYWRSFLPEEA 150 (431)
T ss_pred HHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhhc------chhhhhhhcCcHHHHHHHHHHcCHHH
Confidence 999999987679999999999999864 456899999999876411 13456667899999888777662 33
Q ss_pred HHHHc-ccCCCceeEEEeCCCCCCH-HHHHHHHHcCCC
Q psy2378 693 IKKLL-LFKKNISITLEANPSTFEI-EKFHSYSIIGIN 728 (956)
Q Consensus 693 i~~~~-~~~~~~eitle~np~~it~-e~L~~L~~~Gv~ 728 (956)
..+.+ ..+..+++++++|+...+. +..+.|.+.|+.
T Consensus 151 ~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~ 188 (431)
T PRK14903 151 VLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTE 188 (431)
T ss_pred HHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCe
Confidence 33322 2334568899999998875 467888888864
No 142
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.62 E-value=8.5e-15 Score=163.75 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=145.9
Q ss_pred ccCCCceEEccCcCcCCHHH------HHHHHHcCCCcEEEecccc---cccccCCchhccccCCCCCCEEEEecCCCHHH
Q psy2378 7 KYNKRKISIAPMMNLTDRHC------RMFHRQITRYSWLYTEMFT---TQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~td~~f------R~~~~~~g~~~l~~tem~~---~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~ 77 (956)
.+ +.|++.|||+|.++... ...+++.| ..+.+...-. ...... ....++....+.|+++.|++.....
T Consensus 51 ~l-~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g-~~~~~Gs~~~~~~~~~~~~-~~~~vr~~~~~~p~i~nl~~~~~~~ 127 (333)
T TIGR02151 51 RL-KAPFYINAMTGGSEEAGKINRNLARAARELG-IPMGVGSQRAALKDPETAD-TFEVVREEAPNGPLIANIGAPQLVE 127 (333)
T ss_pred cc-cCCEEEeCCCCCchhHHHHHHHHHHHHHHcC-CCeEEcCchhhccChhhHh-HHHHHHHhCCCCcEEeecCchhhcc
Confidence 44 88999999999994444 44778888 4566554211 111111 1122222245889999887643321
Q ss_pred --HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHH
Q psy2378 78 --LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155 (956)
Q Consensus 78 --~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~ 155 (956)
..++.+.++..++|+++||+.||+......++. +.+...+.++++++.+++||.||.. |.. . ..+.
T Consensus 128 ~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~g--~----~~~~ 195 (333)
T TIGR02151 128 GGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GFG--I----SKEV 195 (333)
T ss_pred ccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CCC--C----CHHH
Confidence 333444444457899999999987655544432 3456779999999999999999975 322 1 3588
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCC-CC------CCcCcH-----HHHHHHHH-hCCCceEEEecCCCCHHHHHHH
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQN-RK------IPILKY-----NFVYNLKK-DFPELEIIINGGIKTKKEIDLH 222 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~-~~------~~~~~~-----~~i~~v~~-~~~~ipVi~nGgI~s~~da~~~ 222 (956)
++.|+++|+|+|+|+++.+.. +...+. +. ....+| +.+.++++ .. ++|||++|||.+++|+.++
T Consensus 196 a~~L~~aGvd~I~Vsg~gGt~--~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipVIasGGI~~~~di~ka 272 (333)
T TIGR02151 196 AKLLADAGVSAIDVAGAGGTS--WAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAP-DAPIIASGGLRTGLDVAKA 272 (333)
T ss_pred HHHHHHcCCCEEEECCCCCCc--ccchhhhcccccccchhhhcccHhHHHHHHHHHhcCC-CCeEEEECCCCCHHHHHHH
Confidence 999999999999999874210 000000 00 112345 45666666 34 7999999999999999999
Q ss_pred hhh-cCEEEEccccc-----cCCcchHH
Q psy2378 223 LNY-IDGVMLGREAY-----KNPFLMSN 244 (956)
Q Consensus 223 l~~-ad~VmiGR~~l-----~~P~l~~~ 244 (956)
+.. ||+|++||++| .+|+...+
T Consensus 273 LalGAd~V~igr~~L~~~~~~g~~~v~~ 300 (333)
T TIGR02151 273 IALGADAVGMARPFLKAALDEGEEAVIE 300 (333)
T ss_pred HHhCCCeehhhHHHHHHHHhcCHHHHHH
Confidence 998 99999999988 55554433
No 143
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.61 E-value=5.9e-15 Score=165.37 Aligned_cols=176 Identities=16% Similarity=0.241 Sum_probs=138.0
Q ss_pred ccccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCHHHHHHHH
Q psy2378 3 MINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSA 82 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA 82 (956)
+.+..+ +.|+++|||.++|+.+||..+.++|+.+++..+-+. ..+.+..|+..||++.++ +++|
T Consensus 41 ~~~~~i-~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~------------~~~~~~e~l~~qi~~~~~---~~~~ 104 (368)
T PRK08649 41 IDAYRF-EIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW------------TRYEDPEPILDEIASLGK---DEAT 104 (368)
T ss_pred ecceec-cCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc------------ccCCCHHHHHHHHHhcCc---HHHH
Confidence 345566 889999999999999999999999987777744322 334456678888988888 4566
Q ss_pred HHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHc
Q psy2378 83 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 162 (956)
Q Consensus 83 ~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~ 162 (956)
+.+++.+++ | .+|+++.+++++++++ + |++|+|++.. +..++++.++++
T Consensus 105 ~~~~~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~~------~~~e~a~~l~ea 153 (368)
T PRK08649 105 RLMQELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSLSPQ------RAQELAPTVVEA 153 (368)
T ss_pred HHHHHhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEecCCc------CHHHHHHHHHHC
Confidence 666665433 3 5699999999999986 4 6667776321 256899999999
Q ss_pred CCCEEEEcccccccccCCCCCCCCCCcC-cHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccc
Q psy2378 163 GCRTFIVHARNAFLKKLNPKQNRKIPIL-KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 163 G~~~i~vh~r~~~~~g~~~~~~~~~~~~-~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~ 235 (956)
|+|+|++|+|+. .+.|.... +|..+.++++.. ++|||+ |+|.|+++++++++. ||+||+|+|-
T Consensus 154 Gvd~I~vhgrt~--------~~~h~~~~~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 154 GVDLFVIQGTVV--------SAEHVSKEGEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred CCCEEEEeccch--------hhhccCCcCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 999999999984 23333334 788888888877 799999 999999999999988 9999999985
No 144
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.59 E-value=1e-14 Score=173.22 Aligned_cols=190 Identities=18% Similarity=0.174 Sum_probs=138.5
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccccc---ceeEEEecCCCCCCCCHHHHHHHHHHHHH-Hccc
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNR---KIHTIFIGGGTPSLISDTGLDYLLKNIKK-LLLF 699 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~---~i~~i~fgggtPs~L~~~~l~~ll~~i~~-~~~~ 699 (956)
.-.||..|.||.....+ ..+....+.+++|+....+.+... ..+.+++.++.. ......++.+...+.+ ...-
T Consensus 205 ~RGCp~~C~FC~~~~~~--~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 281 (490)
T COG1032 205 SRGCPRGCRFCSITKHF--KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPA-LNDEKRFELLSLELIERGLRK 281 (490)
T ss_pred ccCCCCCCCCCCCcccc--cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCcc-ccchhhcccchHHHHHHhccc
Confidence 46788899999987753 112222344444544432222211 124455555432 2223334444333333 2211
Q ss_pred CCCceeEEE-eCCCCCC-HHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHH-HHHHHHhcCCeeEEEEeecC
Q psy2378 700 KKNISITLE-ANPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY-AIEIAKQYFNNFNLDLIYAL 776 (956)
Q Consensus 700 ~~~~eitle-~np~~it-~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~-ai~~l~~~~~~i~~dlI~Gl 776 (956)
.....+++. ++++.++ +++++.++.+|+.++.+|+||+|+++|+.++|+++.+++.+ +++.+++++..+.+++|+|+
T Consensus 282 ~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~~~~~i~G~ 361 (490)
T COG1032 282 GCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGL 361 (490)
T ss_pred CceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCceeeEEEEEcC
Confidence 122345555 7888888 88899999999999999999999999999999999999995 99999999999999999999
Q ss_pred CCCCHHHHHHH---HHHHHccCCC-eEEEEeeeccCCcccccCC
Q psy2378 777 PNQTLSELMLD---LNYAIQYSPP-HLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 777 PgqT~e~~~~t---l~~~~~l~~~-~i~~y~l~~~pgT~l~~~~ 816 (956)
||||.++++++ .+++.++++. .++++.++|.|||+++...
T Consensus 362 pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~ 405 (490)
T COG1032 362 PGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMP 405 (490)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcc
Confidence 99999999999 7888999996 9999999999999998764
No 145
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.59 E-value=2.8e-14 Score=160.37 Aligned_cols=212 Identities=12% Similarity=0.096 Sum_probs=143.4
Q ss_pred CCceEEccCcCcCCHHHHH------HHHHcCCCcEEEecccc---cccccCCchhccccCCCCCCEEEEecCC-----CH
Q psy2378 10 KRKISIAPMMNLTDRHCRM------FHRQITRYSWLYTEMFT---TQAILGNKKHCLDFNAEEHPIAFQVGDN-----EP 75 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~------~~~~~g~~~l~~tem~~---~~~l~~~~~~~~~~~~~~~p~~vQl~g~-----~~ 75 (956)
+.|++.+||+|.+...++. .+++.| ..+.+.++-. ...+ .......+-...+.|+++.|+.. ++
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G-~~~~~Gs~~~~~~~~~~-~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~ 137 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELG-IAMGVGSQRAALKDPEL-ADSFSVVRKVAPDGLLFANLGAVQLYGYGV 137 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcC-CCeEecccHhhccChhh-HHHHHHHHHHCCCceEEeecCccccCCCCH
Confidence 6799999999999866544 567787 4567766521 1111 11111112222377999988754 45
Q ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHH
Q psy2378 76 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155 (956)
Q Consensus 76 ~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~ 155 (956)
+++.++.+. .++|+++||++||+.-....++ .+.+.+.+.++++++.+++||.||... . .. ..+.
T Consensus 138 ~~~~~~~~~---~~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~--g~----s~~~ 202 (352)
T PRK05437 138 EEAQRAVEM---IEADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-F--GI----SKET 202 (352)
T ss_pred HHHHHHHHh---cCCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-C--CC----cHHH
Confidence 666655444 4789999999998764443332 356667899999999999999999873 2 12 2578
Q ss_pred HHHHHHcCCCEEEEccccccccc----CCCCC-CCCCCcCcH-----HHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKK----LNPKQ-NRKIPILKY-----NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY 225 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g----~~~~~-~~~~~~~~~-----~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ 225 (956)
|+.++++|+|+|+|+++.+.... ..+.. .......+| ..+.++++..+++|||++|||.++.|+.+++..
T Consensus 203 a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~ 282 (352)
T PRK05437 203 AKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALAL 282 (352)
T ss_pred HHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHc
Confidence 99999999999999886421000 00000 000111233 467777776447999999999999999999998
Q ss_pred -cCEEEEccccccC
Q psy2378 226 -IDGVMLGREAYKN 238 (956)
Q Consensus 226 -ad~VmiGR~~l~~ 238 (956)
||+|++||+++..
T Consensus 283 GAd~v~ig~~~l~~ 296 (352)
T PRK05437 283 GADAVGMAGPFLKA 296 (352)
T ss_pred CCCEEEEhHHHHHH
Confidence 9999999998764
No 146
>PRK01254 hypothetical protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=167.27 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=147.0
Q ss_pred HHHHhhc--ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEE--ecCCCCC---------
Q psy2378 613 IGTYELK--SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIF--IGGGTPS--------- 679 (956)
Q Consensus 613 ~~~yel~--~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~--fgggtPs--------- 679 (956)
+.++|+. +....-.|+..|+||.++...|+....+.++.|++|++...+.. ..++.+. ++|-|-+
T Consensus 366 ipA~e~i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~--pGfKgii~DLgGptaN~YG~~c~d~ 443 (707)
T PRK01254 366 IPAYDMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKV--PGFTGVISDLGGPTANMYRLRCKSP 443 (707)
T ss_pred CCchhheEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhC--CCcEEEEeccCCCcccccccccccc
Confidence 4455553 33456899999999999988887666777999999998875421 1233333 2222211
Q ss_pred -------------------C-CCHHHHHHHHHHHHHHcccCCCceeEEEe-CCCCC---CHHHHHHHHHcCCC-eEEecC
Q psy2378 680 -------------------L-ISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTF---EIEKFHSYSIIGIN-RLSIGI 734 (956)
Q Consensus 680 -------------------~-L~~~~l~~ll~~i~~~~~~~~~~eitle~-np~~i---t~e~L~~L~~~Gv~-risiGv 734 (956)
+ .+...+..|++.+++. .....+.+.. .|..+ ++++++.|.+..+. .+.+++
T Consensus 444 ~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I---pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVpp 520 (707)
T PRK01254 444 RAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDL---KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAP 520 (707)
T ss_pred ccccccccccccCcccccccCCCHHHHHHHHHHHHhC---CCceEEEEEcCCCccccccCHHHHHHHHHhCCcccccccc
Confidence 1 1224466666666653 3322344333 45555 48899999887764 899999
Q ss_pred CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhc-CC--eeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccC-
Q psy2378 735 QSFNNKYLNILGRT--HDSKQAKYAIEIAKQY-FN--NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP- 808 (956)
Q Consensus 735 QS~~d~~L~~~~R~--~~~~~~~~ai~~l~~~-~~--~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~p- 808 (956)
||+++++|+.|+|+ ++.+++.+.++.+++. +. .+..+||+|+||+|+++|+++++++.+++++--.+..|+|.|
T Consensus 521 EH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~ 600 (707)
T PRK01254 521 EHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPM 600 (707)
T ss_pred ccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCC
Confidence 99999999999998 7889999999999886 53 456699999999999999999999999998888889999999
Q ss_pred --CcccccC
Q psy2378 809 --NTYFFKY 815 (956)
Q Consensus 809 --gT~l~~~ 815 (956)
+|.+|.-
T Consensus 601 t~~T~MYyt 609 (707)
T PRK01254 601 ANATTMYYT 609 (707)
T ss_pred cCchHHHhc
Confidence 8888764
No 147
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.56 E-value=4.6e-14 Score=145.85 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=146.5
Q ss_pred CCCcceeeeeeecccccCCcchHHH-HHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKY-LEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~-v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||.............. .+.+.+.+.... ......++++||.|.... .+..+++.+.+.. ..
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~---~~ 74 (204)
T cd01335 4 TRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAK----ERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PG 74 (204)
T ss_pred CCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHH----hcCceEEEEeCCcCCccH--hHHHHHHHHHhhC---CC
Confidence 3579999999987665443322111 111222222111 234677899999998765 5667777776653 34
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~-R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
..+++.+|...++++.++.|+++|+.++.+|++|.++..++.++ +..+.+++.++++.+++.++.+.+.+|+|.|+++.
T Consensus 75 ~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 75 FEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred ceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChh
Confidence 67888888888899999999999999999999999999999998 88899999999999999988999999999999999
Q ss_pred HHHHHHHHHHHccC-CCeEEEEeeeccCCcccc
Q psy2378 782 SELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFF 813 (956)
Q Consensus 782 e~~~~tl~~~~~l~-~~~i~~y~l~~~pgT~l~ 813 (956)
+++.++++++.++. ++.+.++++.|.|||+++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 99999999999998 999999999999999998
No 148
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.55 E-value=7.2e-14 Score=157.64 Aligned_cols=202 Identities=11% Similarity=0.048 Sum_probs=155.9
Q ss_pred CCCcceeeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.|+..|.||.+.+..+... ....++.++++++...+ ..+.+++|.||+.+.+..+++.++++.|++.+. .
T Consensus 46 T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~----~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~---~ 118 (343)
T TIGR03551 46 TNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK----AGATEVCIQGGIHPDLDGDFYLDILRAVKEEVP---G 118 (343)
T ss_pred ccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH----CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCC---C
Confidence 467899999998765443221 22457778877776543 247889998886666788888999999988642 2
Q ss_pred ceeEEE---------eCCCCCCHHHHHHHHHcCCCeEE-ecCCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhcCCeeEEE
Q psy2378 703 ISITLE---------ANPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQYFNNFNLD 771 (956)
Q Consensus 703 ~eitle---------~np~~it~e~L~~L~~~Gv~ris-iGvQS~~d~~L~~~~R~~-~~~~~~~ai~~l~~~~~~i~~d 771 (956)
..+.+. .+.+..++|.++.|+++|+.++. .|.+++++++++.+.+.+ +.++..++++.+++.|+.++..
T Consensus 119 i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~ 198 (343)
T TIGR03551 119 MHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTAT 198 (343)
T ss_pred ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccce
Confidence 344432 14456689999999999999997 578999999999999864 9999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccC----CcccccCCCC-CCCCHHHHHHHHHHH
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP----NTYFFKYPPL-SMPSNDENAVMQDKI 833 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~p----gT~l~~~~~~-~~~~~~~~~~~~~~~ 833 (956)
+|+|+| ||.++..+++.++.+++++...+..++|.| |||+++.... +..+.++..++....
T Consensus 199 ~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~ 264 (343)
T TIGR03551 199 IMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIA 264 (343)
T ss_pred EEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHH
Confidence 999987 999999999999999999988888888866 9999865221 233555554444443
No 149
>PRK05481 lipoyl synthase; Provisional
Probab=99.55 E-value=6.1e-14 Score=153.63 Aligned_cols=213 Identities=9% Similarity=-0.036 Sum_probs=153.9
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCC---CCCHHHHHHHHHHHHHHccc
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPS---LISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs---~L~~~~l~~ll~~i~~~~~~ 699 (956)
-.-.|+..|.||.++...+ .....+.++++++.... .+++.+.+.||+-. ......+.++++.|.+.++
T Consensus 59 is~GC~~~C~FC~i~~~r~---~s~~~eeI~~ea~~l~~----~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p- 130 (289)
T PRK05481 59 LGDICTRRCPFCDVATGRP---LPLDPDEPERVAEAVAR----MGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNP- 130 (289)
T ss_pred ecccccCCCCCceeCCCCC---CCCCHHHHHHHHHHHHH----CCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCC-
Confidence 4678999999998877543 22446778888776543 24677777766521 1234567788888876532
Q ss_pred CCCceeEEEe-CCCCC-CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEEeec
Q psy2378 700 KKNISITLEA-NPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYA 775 (956)
Q Consensus 700 ~~~~eitle~-np~~i-t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dlI~G 775 (956)
.+.+++ .|... ..+.+..+.++|.+.+..+++|. +++|+.|+|+++.++..+.++.+++. |+.+++|+|+|
T Consensus 131 ----~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets-~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvG 205 (289)
T PRK05481 131 ----GTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETV-PRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVG 205 (289)
T ss_pred ----CcEEEEEccCCCCCHHHHHHHHhcCcceeeccccCh-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEE
Confidence 122333 23322 24667777889999999999994 89999999999999999999999998 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCC
Q psy2378 776 LPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGY 855 (956)
Q Consensus 776 lPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~ 855 (956)
+ |||++++.++++++.+++++++.+|+|++ |.++..+ .+ .+.+.+.+....+...+.||..-.-.-+.|..|
T Consensus 206 f-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~~--v~-~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~ 277 (289)
T PRK05481 206 L-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHLP--VE-RYVTPEEFDEYKEIALELGFLHVASGPLVRSSY 277 (289)
T ss_pred C-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccCC--CC-CcCCHHHHHHHHHHHHHcCchheEecCccccch
Confidence 9 99999999999999999999999999999 3331112 22 223334566677778888987543333445444
Q ss_pred c
Q psy2378 856 E 856 (956)
Q Consensus 856 ~ 856 (956)
.
T Consensus 278 ~ 278 (289)
T PRK05481 278 H 278 (289)
T ss_pred h
Confidence 3
No 150
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.55 E-value=9.4e-15 Score=141.25 Aligned_cols=123 Identities=26% Similarity=0.450 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhhcC-CCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhh-ccCccccCHHHHHHHH
Q psy2378 535 AREFALQGIYQWLFN-NMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYVVLL 612 (956)
Q Consensus 535 ~R~~a~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~-~~~~~rl~~~~~~iLr 612 (956)
+|+.|+++||+++.. +.+.+.++...... .+++.|++|+++|++|+++|+..||++|++++ +|+++|++..++.|||
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~~~~~~r~~~~~~~il~ 80 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSALEKL-QLAKKDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRAILR 80 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHc-ccchhHHHHHHHHHHHHHHhHHHHHHHHHHHccCCChhhhhHHHHHHHH
Confidence 699999999999988 78888777765543 56778999999999999999999999999998 6999999999999999
Q ss_pred HHHHhhcccC-CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhh
Q psy2378 613 IGTYELKSHY-KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVEL 658 (956)
Q Consensus 613 ~~~yel~~~~-~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~ 658 (956)
++.+|+.++. ++|+.+.+++++++++.++.....+|+|+||+.+.+
T Consensus 81 l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r 127 (129)
T cd00447 81 LLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAK 127 (129)
T ss_pred HHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhh
Confidence 9999988765 689999999999999999888889999999998754
No 151
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.54 E-value=1.2e-13 Score=148.06 Aligned_cols=191 Identities=14% Similarity=0.230 Sum_probs=142.5
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCH-HHHHHHHHHHHHc
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEP-KKLAKSAKIIQKW 88 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~-~~~~~aA~~~~~~ 88 (956)
++|+++|||+|+||..|+..+.++|+.+++-+++++.+.+.....++.... +.|+.++++.+++ +.+.+.++.+.++
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~ 79 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT--DKPFGVNLLVPSSNPDFEALLEVALEE 79 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc--CCCeEEeEecCCCCcCHHHHHHHHHhC
Confidence 569999999999999999999999988898888887776642111121111 4688899999876 4566777778889
Q ss_pred CCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEE
Q psy2378 89 GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI 168 (956)
Q Consensus 89 G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~ 168 (956)
|+|+|.+|.++| .++++.+++ .++++.+++.. .+.++.+.+.|+|+|.
T Consensus 80 g~d~v~l~~~~~--------------------~~~~~~~~~-~~i~~i~~v~~-----------~~~~~~~~~~gad~i~ 127 (236)
T cd04730 80 GVPVVSFSFGPP--------------------AEVVERLKA-AGIKVIPTVTS-----------VEEARKAEAAGADALV 127 (236)
T ss_pred CCCEEEEcCCCC--------------------HHHHHHHHH-cCCEEEEeCCC-----------HHHHHHHHHcCCCEEE
Confidence 999999987632 133444443 36777776421 1446678889999999
Q ss_pred EcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcc
Q psy2378 169 VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 169 vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l 241 (956)
++++.. .|..+. .....|+.++++++.+ ++||++.|||.+++++.++++. +|+|++|++++..+..
T Consensus 128 ~~~~~~--~G~~~~----~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 128 AQGAEA--GGHRGT----FDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred EeCcCC--CCCCCc----cccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 987631 222111 1124688999999887 7999999999999999999988 9999999999887754
No 152
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.54 E-value=1.2e-13 Score=154.12 Aligned_cols=214 Identities=13% Similarity=0.108 Sum_probs=139.0
Q ss_pred cccCCCceEEccCcCcC------CHHHHHHHHHcCCCcEEEecc---cccccccCCchhccccCCCCCCEEEEecCC---
Q psy2378 6 SKYNKRKISIAPMMNLT------DRHCRMFHRQITRYSWLYTEM---FTTQAILGNKKHCLDFNAEEHPIAFQVGDN--- 73 (956)
Q Consensus 6 ~~~~~~~i~lAPM~~~t------d~~fR~~~~~~g~~~l~~tem---~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~--- 73 (956)
.++ +.||+.|||+|.+ +..+...++..|- .+..-.. +...... ......+....+.|+++.++..
T Consensus 49 ~~l-~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~-~~~~Gs~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~ 125 (326)
T cd02811 49 KRL-SAPLLISAMTGGSEKAKEINRNLAEAAEELGI-AMGVGSQRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQLN 125 (326)
T ss_pred cee-cCCEEEeCCCCCChHHHHHHHHHHHHHHHcCC-CeEecCchhhccChhhh-hHHHHHHHhCCCceEEeecCccccC
Confidence 355 8899999999987 4455555677772 1222211 1111111 1112233344568888888754
Q ss_pred --CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHH
Q psy2378 74 --EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 151 (956)
Q Consensus 74 --~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 151 (956)
+++++.++.+ ..++|+++||++||+.-....++ ++.+...+.++.+++.+++||.+|.... ..
T Consensus 126 ~~~~~~~~~~i~---~~~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK~~g~---g~---- 190 (326)
T cd02811 126 GYGVEEARRAVE---MIEADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKEVGF---GI---- 190 (326)
T ss_pred CCCHHHHHHHHH---hcCCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC---CC----
Confidence 4555555544 45789999999987654333322 3556677899999999999999998542 12
Q ss_pred HHHHHHHHHHcCCCEEEEccccccccc----CCCCCCC---CCCcCcH-----HHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKK----LNPKQNR---KIPILKY-----NFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g----~~~~~~~---~~~~~~~-----~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
..+.++.|+++|+|+|+|+++.+.... +.+.... .....+| ..+.++++.++++|||++|||.+..|+
T Consensus 191 s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv 270 (326)
T cd02811 191 SRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDI 270 (326)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHH
Confidence 247899999999999999875210000 0000000 0111233 466777776657999999999999999
Q ss_pred HHHhhh-cCEEEEcccccc
Q psy2378 220 DLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 220 ~~~l~~-ad~VmiGR~~l~ 237 (956)
.+++.. ||+|++||++|.
T Consensus 271 ~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 271 AKALALGADLVGMAGPFLK 289 (326)
T ss_pred HHHHHhCCCEEEEcHHHHH
Confidence 999998 999999998663
No 153
>PRK12928 lipoyl synthase; Provisional
Probab=99.52 E-value=3.7e-13 Score=146.97 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=151.5
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCC-C--CCCHHHHHHHHHHHHHH
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP-S--LISDTGLDYLLKNIKKL 696 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtP-s--~L~~~~l~~ll~~i~~~ 696 (956)
|+.....|+..|.||.++. ++.. ....+.++++++.... .+++.+.+.+++- . .....++..+++.|++.
T Consensus 63 fv~is~gC~~~C~FCa~~~--g~~~-~~~~eei~~~a~~~~~----~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~ 135 (290)
T PRK12928 63 FLIMGSICTRRCAFCQVDK--GRPM-PLDPDEPERVAEAVAA----LGLRYVVLTSVARDDLPDGGAAHFVATIAAIRAR 135 (290)
T ss_pred EEEecccccCcCCCCCccC--CCCC-CCCHHHHHHHHHHHHH----CCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhc
Confidence 4445789999999998876 3322 2234556655554332 1345566654431 1 13345788888888775
Q ss_pred cccCCCceeEEEe-CCCCC--CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC--CeeEEE
Q psy2378 697 LLFKKNISITLEA-NPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF--NNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitle~-np~~i--t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~--~~i~~d 771 (956)
.+ .+.+++ .|+.. ..+.++.|.++|...+..++|| ++++++.|+|+++.++..+.++.+++.+ +.++.+
T Consensus 136 ~p-----~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~ 209 (290)
T PRK12928 136 NP-----GTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSG 209 (290)
T ss_pred CC-----CCEEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceeccc
Confidence 32 334454 56544 5788999999999989999997 5999999999999999999999999987 899999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeec--cCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHh
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI--EPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 849 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~--~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~ 849 (956)
+|+|+ |||.+++.++++++.+++++.+.+++|.. ....|+.+. ..+++ |+...+.-.+.||.+-+-.-
T Consensus 210 iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~-----~~~~~----f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 210 LMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRY-----WTPEE----FEALGQIARELGFSHVRSGP 279 (290)
T ss_pred EEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeec-----cCHHH----HHHHHHHHHHcCCceeEecC
Confidence 99999 99999999999999999999999999976 344454443 12222 33334445568888654444
Q ss_pred hcCCCC
Q psy2378 850 YSKTGY 855 (956)
Q Consensus 850 far~g~ 855 (956)
+.|..|
T Consensus 280 ~~rssy 285 (290)
T PRK12928 280 LVRSSY 285 (290)
T ss_pred cccccc
Confidence 444444
No 154
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.51 E-value=4.7e-14 Score=148.52 Aligned_cols=146 Identities=22% Similarity=0.264 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
+++|++++++|+|.|.+|.|||...+.++ |.+++++|+.+. +|++++++||+.|+|.|. ..=|+.
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ---------~~Ea~~ 91 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH---------FVEAQI 91 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH---------HHHHHH
Confidence 57899999999999999999999875544 999999999866 777778999999999974 122556
Q ss_pred HHHcCCCEEEEcccc----------------------------------------------------------------c
Q psy2378 159 VSSAGCRTFIVHARN----------------------------------------------------------------A 174 (956)
Q Consensus 159 l~~~G~~~i~vh~r~----------------------------------------------------------------~ 174 (956)
|+++|+|.|.-+.|. .
T Consensus 92 L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~ 171 (293)
T PRK04180 92 LEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIR 171 (293)
T ss_pred HHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHH
Confidence 666666666422110 0
Q ss_pred ccccCCCCCCCC---CCcCcHHHHHHHHHhCCCceEE--EecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 175 FLKKLNPKQNRK---IPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 175 ~~~g~~~~~~~~---~~~~~~~~i~~v~~~~~~ipVi--~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
.+.||++.+... ...++|+.++++++.. ++||+ +.|||.||+++..+++. ||+|++|+++...++
T Consensus 172 ~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 172 RLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD 242 (293)
T ss_pred HHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC
Confidence 134444322111 1346999999999987 79998 99999999999999988 999999999985444
No 155
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.48 E-value=6.6e-13 Score=150.88 Aligned_cols=200 Identities=11% Similarity=0.020 Sum_probs=150.9
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||.+.+..+........+.++++++...+ .+++++.+.+ .+|...+.+++.++++.+++.++
T Consensus 81 Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~----~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p---- 152 (371)
T PRK09240 81 SNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK----LGFEHILLLTGEHEAKVGVDYIRRALPIAREYFS---- 152 (371)
T ss_pred cccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh----CCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC----
Confidence 67999999999886554433233446777777765433 3477786654 45666788888888888887642
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHHHHhcCCe-eEEEEeecCCC
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAKQYFNN-FNLDLIYALPN 778 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~l~~~~~~-i~~dlI~GlPg 778 (956)
.++++++| ++.+.++.|+++|++++++++||++++.++.+. |.|+.++..++++.++++|+. +++++|+|+++
T Consensus 153 -~i~i~~g~--lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge 229 (371)
T PRK09240 153 -SVSIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSD 229 (371)
T ss_pred -CceeccCC--CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCc
Confidence 46666554 689999999999999999999999999999984 689999999999999999885 99999999964
Q ss_pred CCHHHHHHHHHHHHccCCC------eEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy2378 779 QTLSELMLDLNYAIQYSPP------HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 839 (956)
Q Consensus 779 qT~e~~~~tl~~~~~l~~~------~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 839 (956)
+.++...++..+.++++. .|++..|.|.+| |+... ...++++..+.....+-.+..
T Consensus 230 -~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~---~~~~~~e~l~~ia~~Rl~lP~ 291 (371)
T PRK09240 230 -WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPA---SIVSDKQLVQLICAFRLFLPD 291 (371)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCC---CCCCHHHHHHHHHHHHHHCcc
Confidence 888888888777777653 677888999999 87543 234555555555554444443
No 156
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.48 E-value=9.1e-13 Score=146.63 Aligned_cols=205 Identities=12% Similarity=0.025 Sum_probs=150.8
Q ss_pred CCCcceeeeeeecccccCCc-chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNI-DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~-~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.|+..|.||.+.+.++.. .....++.++++++...+ ..++.+.|.+|....+..+++.++++.|++... .
T Consensus 12 T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~---~ 84 (309)
T TIGR00423 12 TNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA----KGATEVCIQGGLNPQLDIEYYEELFRAIKQEFP---D 84 (309)
T ss_pred ccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH----CCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCC---C
Confidence 56899999999887654421 223446778888775433 246788888876556778888999999988642 1
Q ss_pred ceeEEEe---------CCCCCCHHHHHHHHHcCCCeEE-ecCCCCCHHHHHHh-CCCCCHHHHHHHHHHHHhcCCeeEEE
Q psy2378 703 ISITLEA---------NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNIL-GRTHDSKQAKYAIEIAKQYFNNFNLD 771 (956)
Q Consensus 703 ~eitle~---------np~~it~e~L~~L~~~Gv~ris-iGvQS~~d~~L~~~-~R~~~~~~~~~ai~~l~~~~~~i~~d 771 (956)
..+..-+ +....++|.++.|+++|+.++. .|.|++++++++.+ .+..+.++..++++.+++.|+.++..
T Consensus 85 i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~ 164 (309)
T TIGR00423 85 VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTAT 164 (309)
T ss_pred ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceee
Confidence 2232211 2223458899999999999995 79999999999988 56779999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc----CCcc-cccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTY-FFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~----pgT~-l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
+|+|+| ||.++..+++.++.+++++...+..+.|. ++|| +... ..+.++..+..+....++-+|
T Consensus 165 ~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~-~~~~~~~~e~lr~iA~~Rl~l 233 (309)
T TIGR00423 165 MMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGE-VRKGASGIDDLKVIAISRILL 233 (309)
T ss_pred EEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccC-CCCCCCHHHHHHHHHHHHHhc
Confidence 999988 89999999999999999887766666663 5888 5432 123455556555444443333
No 157
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.47 E-value=5.8e-13 Score=150.18 Aligned_cols=202 Identities=11% Similarity=0.047 Sum_probs=146.1
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHH------------HHHHHH
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDT------------GLDYLL 690 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~------------~l~~ll 690 (956)
-...|+..|.||.+....+... ....+.++++++...+ ..+..+.|.+|.+..+... .+.+++
T Consensus 18 ~Tn~C~~~C~fC~~~~~~~~~~-~ls~eei~~~~~~~~~----~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 18 LTYECRNRCGYCTFRRDPGQPS-LLSPEEVKEILRRGAD----AGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ccccccCCCccCCCcCCCCccC-cCCHHHHHHHHHHHHH----CCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 3578999999998766544333 4557888888876543 2467788877765443311 122223
Q ss_pred HHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC---CCCHHHHHHHHHHHHhcCCe
Q psy2378 691 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEIAKQYFNN 767 (956)
Q Consensus 691 ~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R---~~~~~~~~~ai~~l~~~~~~ 767 (956)
..+.+.. ... .+...++|..++++.++.|+++|+. +.+.+||+++..++.++| .++.++..++++.+++.|+.
T Consensus 93 ~~i~~~~-~~~--g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi~ 168 (336)
T PRK06245 93 YDLCELA-LEE--GLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKIP 168 (336)
T ss_pred HHHHHHH-hhc--CCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCCc
Confidence 2222221 011 1223478999999999999999853 566779999999988865 44577888999999988999
Q ss_pred eEEEEeecCCCCCHHHHHHHHHHHHccC-----CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 768 FNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 768 i~~dlI~GlPgqT~e~~~~tl~~~~~l~-----~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
++.++|+|+ |||.+++.+++..+.+++ ++.+.+++|.|.|||++... ..++.++..+++..++..|
T Consensus 169 ~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~---~~~s~~e~l~~ia~~Rl~l 239 (336)
T PRK06245 169 FTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENH---PEPSLEEMLRVVALARLIL 239 (336)
T ss_pred eeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccC---CCcCHHHHHHHHHHHHHHC
Confidence 999999998 999999999999988875 67899999999999998644 2456666666666665555
No 158
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.47 E-value=4.6e-13 Score=151.27 Aligned_cols=206 Identities=14% Similarity=0.073 Sum_probs=150.1
Q ss_pred CCCcceeeeeeecccccCCc-chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHc-ccCC
Q psy2378 624 IPYKVIINEAIELVKSFGNI-DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL-LFKK 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~-~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~-~~~~ 701 (956)
.-.|+..|.||.+.+..+.. .....++.++++++...+ ..++.+++.||.+..++.+++.++++.+++.. .+..
T Consensus 48 s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~----~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 48 TNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA----YGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred chhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH----cCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 56899999999865443322 112345677777765432 24778999888666778888888999998764 2221
Q ss_pred Cc----eeEEEeCCCC-CCHHHHHHHHHcCCCeEE-ecCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 702 NI----SITLEANPST-FEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 702 ~~----eitle~np~~-it~e~L~~L~~~Gv~ris-iGvQS~~d~~L~~~~R-~~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
.. ++..-+.... .++|.++.|+++|+++++ .|.|++++++++.+.+ ..+.+++.++++.+++.|+.++..+|+
T Consensus 124 ~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 124 HSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred CCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEe
Confidence 11 1100111122 248999999999999998 5899999999999864 579999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc----CCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~----pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
|+ |||.+++.+++.++.+++++...+..+.|. +|||+.+.. .++.++..+....++-.+
T Consensus 204 Gl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~---~~~~~e~l~~iA~~Rl~l 266 (340)
T TIGR03699 204 GH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKR---PATSTEYLKVLAISRIFL 266 (340)
T ss_pred eC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCC---CCCHHHHHHHHHHHHHcC
Confidence 96 999999999999999999988777666663 799987643 345555555544443333
No 159
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.46 E-value=1.6e-12 Score=142.13 Aligned_cols=214 Identities=12% Similarity=0.043 Sum_probs=150.3
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCC-CCC--CCHHHHHHHHHHHHHH
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT-PSL--ISDTGLDYLLKNIKKL 696 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggt-Ps~--L~~~~l~~ll~~i~~~ 696 (956)
|+.-...|...|.||.++...+.... ..+.++++++...+ .+++++.+.+++ +.+ .....+..+++.|++.
T Consensus 66 fm~i~~gC~~~C~FC~v~~~rg~~~~--~~eei~~~a~~~~~----~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~ 139 (302)
T TIGR00510 66 FMILGDICTRRCPFCDVAHGRNPLPP--DPEEPAKLAETIKD----MGLKYVVITSVDRDDLEDGGASHLAECIEAIREK 139 (302)
T ss_pred EEecCcCcCCCCCcCCccCCCCCCCC--CHHHHHHHHHHHHH----CCCCEEEEEeecCCCcccccHHHHHHHHHHHHhc
Confidence 34445689999999998654333222 23556666554432 235666666543 222 1234577777777664
Q ss_pred cccCCCceeEEEe-CCCC-CCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEE
Q psy2378 697 LLFKKNISITLEA-NPST-FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDL 772 (956)
Q Consensus 697 ~~~~~~~eitle~-np~~-it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dl 772 (956)
. + .+.+++ .|+. -+.+.++.|+++|++.+..++||. +++++.|+|.++.++..+.++.+++. ++.+..++
T Consensus 140 ~---p--~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~Tgi 213 (302)
T TIGR00510 140 L---P--NIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGI 213 (302)
T ss_pred C---C--CCEEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceE
Confidence 2 2 234444 3332 267899999999999999999988 88999999999999999999999997 78899999
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeec--cCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhh
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI--EPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 850 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~--~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~f 850 (956)
|+|| |||++++.++++++.+++++.+.+.+|.. .+++|..+.. .| ++ ++...+...+.||.+-+-.-+
T Consensus 214 IVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~---~p--~~----f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 214 MVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV---SP--EE----FDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred EEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC---CH--HH----HHHHHHHHHHcCChheEeccc
Confidence 9999 99999999999999999999999999863 3566665441 22 22 333334456788886544444
Q ss_pred cCCCC
Q psy2378 851 SKTGY 855 (956)
Q Consensus 851 ar~g~ 855 (956)
.|..|
T Consensus 284 vrssy 288 (302)
T TIGR00510 284 VRSSY 288 (302)
T ss_pred chhhh
Confidence 44443
No 160
>PRK08445 hypothetical protein; Provisional
Probab=99.45 E-value=8.4e-13 Score=148.34 Aligned_cols=198 Identities=12% Similarity=0.063 Sum_probs=145.6
Q ss_pred CCCcceeeeeeecccccCCcch-HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE-KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~-~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.|+..|.||.+.+..+.... ....+.+++.++..... ....+++.||.+..++.+++.++++.|++.++.
T Consensus 49 Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~----g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~--- 121 (348)
T PRK08445 49 TNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAI----GGTQILFQGGVHPKLKIEWYENLVSHIAQKYPT--- 121 (348)
T ss_pred ccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHc----CCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---
Confidence 5688999999998765433221 11345566655544332 245788888888888999999999999998641
Q ss_pred ceeEE-E---e----CCCCCC-HHHHHHHHHcCCCeEE-ecCCCCCHHHHHHh-CCCCCHHHHHHHHHHHHhcCCeeEEE
Q psy2378 703 ISITL-E---A----NPSTFE-IEKFHSYSIIGINRLS-IGIQSFNNKYLNIL-GRTHDSKQAKYAIEIAKQYFNNFNLD 771 (956)
Q Consensus 703 ~eitl-e---~----np~~it-~e~L~~L~~~Gv~ris-iGvQS~~d~~L~~~-~R~~~~~~~~~ai~~l~~~~~~i~~d 771 (956)
..+.. . + +....+ +|.++.|+++|++++. +|+||++|++++.+ ++..+.++..++++.+++.|+.++..
T Consensus 122 i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg 201 (348)
T PRK08445 122 ITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTAT 201 (348)
T ss_pred cEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeE
Confidence 12211 1 1 112233 8999999999999995 89999999999999 77899999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEe----eeccCCcccccCC-CCCCCCHHHHHHH
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYS----LTIEPNTYFFKYP-PLSMPSNDENAVM 829 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~----l~~~pgT~l~~~~-~~~~~~~~~~~~~ 829 (956)
+|+|+ +||.++..+.+..+.+++++...+.. +.+.||||+.+.. ..+.++.++..+.
T Consensus 202 ~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~ 263 (348)
T PRK08445 202 MMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRL 263 (348)
T ss_pred EEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHH
Confidence 99997 59999999999999999887633333 2255999998653 2233455554433
No 161
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.45 E-value=9.5e-13 Score=149.47 Aligned_cols=201 Identities=11% Similarity=0.036 Sum_probs=144.2
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEec-CCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIG-GGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fg-ggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
.+..|+..|.||...+........-..+.+.++++...+ .++.++.+. |.+|...+.+++.++++.+++.++
T Consensus 79 ~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~----~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p--- 151 (366)
T TIGR02351 79 LSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKK----SGFKEILLVTGESEKAAGVEYIAEAIKLAREYFS--- 151 (366)
T ss_pred ECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHh----CCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC---
Confidence 368999999999886543211111125666666655433 236677655 557888888889999999987642
Q ss_pred CceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHHHHhcCCe-eEEEEeecCC
Q psy2378 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAKQYFNN-FNLDLIYALP 777 (956)
Q Consensus 702 ~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~l~~~~~~-i~~dlI~GlP 777 (956)
.++++++| ++.+.++.|+++|++|+++++||+|++.++.++ +.|+.++..++++.+++.|+. +++++|+|+|
T Consensus 152 --~i~Iei~~--lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~ 227 (366)
T TIGR02351 152 --SLAIEVQP--LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLD 227 (366)
T ss_pred --cccccccc--CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCc
Confidence 45566655 789999999999999999999999999999986 789999999999999999886 9999999998
Q ss_pred CCCHHHHHHHHHHHHccCC------CeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy2378 778 NQTLSELMLDLNYAIQYSP------PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 839 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~------~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 839 (956)
+ +.++...++..+..++. ..|++..|.|.+| ++.... ..++.+..+.....+-.+..
T Consensus 228 e-~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~---~l~~~~~~~~i~~~R~~~P~ 290 (366)
T TIGR02351 228 D-WRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKV---IVTDRELVQIICAYRLFDPF 290 (366)
T ss_pred h-hHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCC---cCCHHHHHHHHHHHHHhCcc
Confidence 6 55554455555554443 5678888999999 774432 23344444444444444433
No 162
>PRK06267 hypothetical protein; Provisional
Probab=99.44 E-value=3.2e-12 Score=144.14 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=152.3
Q ss_pred CCCcc--eeeeeeecccccCC----cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 624 IPYKV--IINEAIELVKSFGN----IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 624 ~P~c~--~~Ce~C~l~k~~~~----~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
+-.|+ ..|.||.+.+.... ....+.++.+++|++...+. .++.+++.||.+ ++...+..+++.+++.-
T Consensus 34 S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~----Gv~~~~lsgG~~--~~~~el~~i~e~I~~~~ 107 (350)
T PRK06267 34 GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI----GWKLEFISGGYG--YTTEEINDIAEMIAYIQ 107 (350)
T ss_pred cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc----CCCEEEEecCCC--CCHHHHHHHHHHHHHhh
Confidence 56999 88999987664221 12345688888888765442 255677888876 56778888999887652
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCC
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALP 777 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlP 777 (956)
. . .+.++....+.+.+..+...|+ ..|+||++++.++.++++++.++..++++.+++.|+.++..+|+|+
T Consensus 108 ~----~--~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGl- 177 (350)
T PRK06267 108 G----C--KQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGL- 177 (350)
T ss_pred C----C--ceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeC-
Confidence 2 1 2223455556666666666665 5699999999999999999999999999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 838 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 838 (956)
|||.+++.++++++.+++++.+.++.|+|.||||+... +.++.++..+....++-.+.
T Consensus 178 gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~---~~~s~~e~lr~ia~~Rl~lP 235 (350)
T PRK06267 178 GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENK---PSVTTLEYMNWVSSVRLNFP 235 (350)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCC---CCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999998764 34666776666666655554
No 163
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.43 E-value=2.4e-12 Score=145.57 Aligned_cols=203 Identities=10% Similarity=0.031 Sum_probs=153.1
Q ss_pred CCCcceeeeeeecccccCCcch-HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE-KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~-~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.|+..|.||.+.+..+.... ...++.++++++...+ ..+.++.+.+|....++.+++.++++.|++.++
T Consensus 55 Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~----~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p---- 126 (351)
T TIGR03700 55 TNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA----PGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYP---- 126 (351)
T ss_pred ccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH----CCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCC----
Confidence 5688999999998765443211 1236777777765432 346788888876556777888999999988753
Q ss_pred ceeEEEe-----------CCCCCCHHHHHHHHHcCCCeEE-ecCCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhcCCeeE
Q psy2378 703 ISITLEA-----------NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQYFNNFN 769 (956)
Q Consensus 703 ~eitle~-----------np~~it~e~L~~L~~~Gv~ris-iGvQS~~d~~L~~~~R~~-~~~~~~~ai~~l~~~~~~i~ 769 (956)
.+.+.+ .....++|.++.|+++|++++. .|+||+++++++.+.+++ +.++..++++.+++.|+.++
T Consensus 127 -~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 127 -DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTN 205 (351)
T ss_pred -CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 222222 1234567889999999999997 699999999999999865 66788999999999999999
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc----CCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~----pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
..+|+|+ |||.++..+++..+.+++++...+..+.|. +|||+... ..+.++..+..++....+-+|
T Consensus 206 sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~-~~~~~~~~e~lr~iA~~Rl~l 275 (351)
T TIGR03700 206 ATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRL-LAKGPTGLDDLKTLAVSRLYL 275 (351)
T ss_pred eEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCC-CCCCCCHHHHHHHHHHHHHhc
Confidence 9999997 999999999999999999988777788887 59999643 113355666555555544444
No 164
>PLN02389 biotin synthase
Probab=99.41 E-value=5.6e-12 Score=142.56 Aligned_cols=199 Identities=10% Similarity=0.012 Sum_probs=144.0
Q ss_pred CCCCcceeeeeeecccccC-Cc--chHHHHHHHHHHHhhhcccccccceeEEEec----CCCCCCCCHHHHHHHHHHHHH
Q psy2378 623 KIPYKVIINEAIELVKSFG-NI--DEKKYLEALLIDVELSLPIILNRKIHTIFIG----GGTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~-~~--~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fg----ggtPs~L~~~~l~~ll~~i~~ 695 (956)
..-.|+..|.||.....+. +. ...-..+.++++++...+ .++.++.++ ++...-..-+++.++++.+++
T Consensus 89 ~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~----~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~ 164 (379)
T PLN02389 89 KTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKE----AGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG 164 (379)
T ss_pred ccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHH----cCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc
Confidence 4578999999998765322 11 112235667776665433 235556553 111110112344444554442
Q ss_pred HcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeec
Q psy2378 696 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYA 775 (956)
Q Consensus 696 ~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~G 775 (956)
. ..++ -++...+++|.++.|+++|++++.+.++| +++..+.+..+++.++..++++.+++.|+.++..+|+|
T Consensus 165 ~-----~l~i--~~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiG 236 (379)
T PLN02389 165 M-----GMEV--CCTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIG 236 (379)
T ss_pred C-----CcEE--EECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEEC
Confidence 1 2233 35667789999999999999999999999 68888888888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcc--CCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 776 LPNQTLSELMLDLNYAIQY--SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 776 lPgqT~e~~~~tl~~~~~l--~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
+ |||.++..+++.++.++ .|+.+.++.|+|.||||++... .++..+..+.....+-++
T Consensus 237 l-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~---~~s~~e~lr~iAi~Rl~l 296 (379)
T PLN02389 237 L-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQK---PVEIWEMVRMIATARIVM 296 (379)
T ss_pred C-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCC---CCCHHHHHHHHHHHHHHC
Confidence 9 99999999999999999 6899999999999999997653 355656555555544444
No 165
>PRK08508 biotin synthase; Provisional
Probab=99.41 E-value=7.5e-12 Score=136.94 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=148.1
Q ss_pred CCCCCcceeeeeeecccccCC-cch--HHHHHHHHHHHhhhcccccccceeEEEecCCCCC--CCCHHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGN-IDE--KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPS--LISDTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~-~~~--~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs--~L~~~~l~~ll~~i~~~ 696 (956)
-+.-.|+..|.||.....+.. ... ....+.++++++...+ ..+..+.+.++.+. -...+++.++++.+++.
T Consensus 12 ~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~----~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~ 87 (279)
T PRK08508 12 ISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA----NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKE 87 (279)
T ss_pred cccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH----CCCCEEEEEeccCCCCcccHHHHHHHHHHHHhh
Confidence 456899999999998665432 121 1345777777765433 23566766432222 12234555566666654
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecC
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYAL 776 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~Gl 776 (956)
+ +.+.+-+.....++|.++.|+++|++++.++++| .++..+.+..+++.++..+.++.+++.|+.++..+|+|+
T Consensus 88 ~-----p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl 161 (279)
T PRK08508 88 V-----PGLHLIACNGTASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL 161 (279)
T ss_pred C-----CCcEEEecCCCCCHHHHHHHHHcCCCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec
Confidence 2 1334444567778999999999999999999999 478888888889999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 777 PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 777 PgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
|||.++..+.+.++.+++++.+-+..+.|.||||+.. ...+.++..+....++-+|
T Consensus 162 -GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~----~~~~~~~~lr~iAv~Rl~l 217 (279)
T PRK08508 162 -GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA----PTLSADEALEIVRLAKEAL 217 (279)
T ss_pred -CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC----CCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999853 1245555555544444443
No 166
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.41 E-value=2.8e-12 Score=137.38 Aligned_cols=127 Identities=16% Similarity=0.338 Sum_probs=104.5
Q ss_pred cccccccCChHHHHHHHHHHhhcc--CccE---EEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCC
Q psy2378 108 FFGAILMTKPLLVSDCIKAMRDSV--EIDI---TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182 (956)
Q Consensus 108 ~~G~~l~~~~~~~~eiv~~v~~~~--~~pv---~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~ 182 (956)
..|++++++|+++.++++.+.+++ .+|+ .+|++ ||++.. .+..++++.+++.|++.|++|.++.
T Consensus 102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~--~~~~~~~~~l~~~G~~~iiv~~~~~-------- 170 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDG--GDLWEVLERLDSAGCSRYVVTDVTK-------- 170 (241)
T ss_pred EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecC--ccHHHHHHHHHhcCCCEEEEEeecC--------
Confidence 468999999999999999998776 3455 56664 887633 3578999999999999999999984
Q ss_pred CCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhh---h-cCEEEEccccccCCcchHHHHH
Q psy2378 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN---Y-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 183 ~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~---~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
.+.+.++ ||+.++++++.+ ++|||+||||.|++|+.++.+ . ||+||+||+++.++.=+.++++
T Consensus 171 ~g~~~G~-d~~~i~~i~~~~-~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~ 237 (241)
T PRK14024 171 DGTLTGP-NLELLREVCART-DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA 237 (241)
T ss_pred CCCccCC-CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence 3344444 999999999987 799999999999999998863 2 9999999999999876666543
No 167
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.40 E-value=2.3e-12 Score=129.04 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=125.1
Q ss_pred CCCcceeeeeeecccc-cCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKS-FGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~-~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||..... ..........+.++++++.... ...+..+.++||.|+..+. ...++..+.+.. ...
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~---~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~--~~~ 76 (166)
T PF04055_consen 4 TRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQ---DKGVKEIFFGGGEPTLHPD--FIELLELLRKIK--KRG 76 (166)
T ss_dssp ESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHH---HTTHEEEEEESSTGGGSCH--HHHHHHHHHHCT--CTT
T ss_pred CcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhH---hcCCcEEEEeecCCCcchh--HHHHHHHHHHhh--ccc
Confidence 3679999999987653 2333334446667777765531 1126889999999988754 333444444331 345
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHH-HHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNK-YLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~-~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
..+++.+++...+++.++.|++.|+.++.+|+||.+++ +++.+++.++.+++.++++.++++|......+|+|+||+|.
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~ 156 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGEND 156 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSH
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCH
Confidence 68888899888889999999999999999999999999 99999999999999999999999987658889999999999
Q ss_pred HHHHHHHHHH
Q psy2378 782 SELMLDLNYA 791 (956)
Q Consensus 782 e~~~~tl~~~ 791 (956)
+++.++++++
T Consensus 157 ~e~~~~~~~i 166 (166)
T PF04055_consen 157 EEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhCcC
Confidence 9999999875
No 168
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.40 E-value=6.4e-13 Score=135.62 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHhcccccccHHHHHHHHHHHHHhHHHHHHHHHhhh-ccCccccCHHHHH
Q psy2378 533 HRAREFALQGIYQW--LFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYV 609 (956)
Q Consensus 533 ~~~R~~a~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~lD~~i~~~~-~~~~~rl~~~~~~ 609 (956)
..+|...-+.|-.. -.++.+....++.......- +++++|+++||+||++|+..||++|++++ +|+++|+++++++
T Consensus 74 ~~~r~~l~~~~~~~~~~~ng~s~~~~lp~ll~~~~q-~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~W~l~rL~~idr~ 152 (207)
T PRK09634 74 ESARTMLQEALTLAETAINRLSAALELPELLQLADQ-EEVREYALERIGAVIRNRKEIDQLLDTVMVGWQLKRLPRIDRD 152 (207)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccCCCHHHHH
Confidence 34555544443332 23566666667766544211 78999999999999999999999999998 5999999999999
Q ss_pred HHHHHHHhhcccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhh
Q psy2378 610 VLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELS 659 (956)
Q Consensus 610 iLr~~~yel~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~ 659 (956)
|||+|+||++|+ ++|+.+.++++++++|.++.....+|+|+|++.+.+.
T Consensus 153 ILRlavyELl~l-~~P~~vaINEAVeLAK~~~~~~~~~FVNaVLrri~r~ 201 (207)
T PRK09634 153 ILRLAVVEILFL-NTPAAVAINEAVELAKRYSDEQGRRFINGVLRRLQDA 201 (207)
T ss_pred HHHHHHHHHHhc-CCCchhHHHHHHHHHHHhCCCcccchHHHHHHHHHHH
Confidence 999999999996 6899999999999999999888889999999998654
No 169
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.38 E-value=1.9e-11 Score=126.39 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=133.8
Q ss_pred eEEccCcCcC-CHHHHH--HHHHcCCCcEEEeccccccccc-CCch---hccccCCCCCCEEEEecCCCHHHHHH-HHHH
Q psy2378 13 ISIAPMMNLT-DRHCRM--FHRQITRYSWLYTEMFTTQAIL-GNKK---HCLDFNAEEHPIAFQVGDNEPKKLAK-SAKI 84 (956)
Q Consensus 13 i~lAPM~~~t-d~~fR~--~~~~~g~~~l~~tem~~~~~l~-~~~~---~~~~~~~~~~p~~vQl~g~~~~~~~~-aA~~ 84 (956)
+++++|++-. +.+... .+.+ ||++++.++........ .... .....+..+.|+++|+..+++.++.. +|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 79 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAE-AGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAA 79 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHc-CCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHH
Confidence 4678998865 333332 2333 44788888876555443 1111 11223445789999999988876554 4688
Q ss_pred HHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcC
Q psy2378 85 IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG 163 (956)
Q Consensus 85 ~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G 163 (956)
++++|+|+|+||.+||.. +++..++++++++.+ +.|+.+|++...+... + .+.+.|
T Consensus 80 ~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~--------~-~~~~~g 136 (200)
T cd04722 80 ARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAA--------A-AAEEAG 136 (200)
T ss_pred HHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch--------h-hHHHcC
Confidence 899999999999999853 899999999999988 8999999987543211 1 178899
Q ss_pred CCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcc
Q psy2378 164 CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 233 (956)
Q Consensus 164 ~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR 233 (956)
+++|.++++.....+ . . ..+.....+..+++.. ++||+++|||++++++.++++. ||+|++||
T Consensus 137 ~d~i~~~~~~~~~~~---~--~-~~~~~~~~~~~~~~~~-~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 137 VDEVGLGNGGGGGGG---R--D-AVPIADLLLILAKRGS-KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCEEEEcCCcCCCCC---c--c-CchhHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 999999987631111 0 0 0011223455666655 7999999999999999999998 99999997
No 170
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.37 E-value=2.1e-11 Score=135.82 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=137.7
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCHHHHHHHHHHHHHcC
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 89 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G 89 (956)
+.||+.|||.++|+..+...+.+.||.+++..+|.. +.+.. .+.... +.+.+.+..|.+++.... ++.+.++|
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~----~i~~vk-~~l~v~~~~~~~~~~~~~-~~~l~eag 106 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQAE----EVRKVK-GRLLVGAAVGTREDDKER-AEALVEAG 106 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHH----HHHHhc-cCceEEEecCCChhHHHH-HHHHHhcC
Confidence 679999999999999999988888988888887643 33221 111111 345556667776665544 44556689
Q ss_pred CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEE
Q psy2378 90 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI 168 (956)
Q Consensus 90 ~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~ 168 (956)
+|.|+++++. | +++.+.++++.+++..+ +||.+ |.- . ..+.|+.+.++|+|+|.
T Consensus 107 v~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~v--~----t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 107 VDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GNV--V----TAEAARDLIDAGADGVK 161 (325)
T ss_pred CCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CCC--C----CHHHHHHHHhcCCCEEE
Confidence 9999998743 2 23567888999998763 44443 221 1 24678899999999999
Q ss_pred EcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC--CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcch
Q psy2378 169 VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLM 242 (956)
Q Consensus 169 vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~ 242 (956)
++.+... .. ........+...|..+.++.+... ++|||++|||.++.|+.++++. ||+||+|+.+.+-..-.
T Consensus 162 vg~g~G~-~~-~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 162 VGIGPGS-IC-TTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESP 236 (325)
T ss_pred ECCCCCc-Cc-ccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCC
Confidence 9743210 00 011112233457877777766542 5999999999999999999988 99999999998866544
No 171
>KOG0134|consensus
Probab=99.36 E-value=4.2e-12 Score=139.39 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecCC---------CCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccC--
Q psy2378 76 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIG-- 142 (956)
Q Consensus 76 ~~~~~aA~~~~~~G~d~IeiN~g---------CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g-- 142 (956)
|.|+.||+.+.++|||+||||-. .|..|.|+|.|||+++||.+++.|++.+|++.++ .+..+-.+.+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~f 253 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEF 253 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhh
Confidence 56788888888999999999854 8999999999999999999999999999999984 2222222321
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCC-CCCCCCCCc----CcHHHHHHHHHhCCCceE-EEecCCCCH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN-PKQNRKIPI----LKYNFVYNLKKDFPELEI-IINGGIKTK 216 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~-~~~~~~~~~----~~~~~i~~v~~~~~~ipV-i~nGgI~s~ 216 (956)
-+...+.++...++...++.|.|.+-+.+++.. -++ ....+..-+ -..+....++..+ +.|| .++|+..++
T Consensus 254 q~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~--~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~-kgt~v~a~g~~~t~ 330 (400)
T KOG0134|consen 254 QDIGITIDDAIKMCGLYEDGGLDFVELTGGTFL--AYVHFIEPRQSTIAREAFFVEFAETIRPVF-KGTVVYAGGGGRTR 330 (400)
T ss_pred hhccccccchHHHHHHHHhcccchhhccCchhh--hhhhhccccccccccccchhhhhhHHHHHh-cCcEEEecCCccCH
Confidence 011122345678899999999997766655421 111 112222211 2345666777777 4554 577889999
Q ss_pred HHHHHHhhh--cCEEEEccccccCCcchHHHHHh
Q psy2378 217 KEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 248 (956)
Q Consensus 217 ~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~~ 248 (956)
+.+.++++. .|+|..||.+++||+++.++...
T Consensus 331 ~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 331 EAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred HHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 999999988 99999999999999999999863
No 172
>KOG2492|consensus
Probab=99.34 E-value=3.1e-11 Score=129.80 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=147.0
Q ss_pred CCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc------cccee------EEEecCCCCCCCCH---------
Q psy2378 625 PYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL------NRKIH------TIFIGGGTPSLISD--------- 683 (956)
Q Consensus 625 P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~------~~~i~------~i~fgggtPs~L~~--------- 683 (956)
..|..-|+||..+-..|+. +.+.++.+++|++.+.+..- +..+. ..-|.+..|+.+.+
T Consensus 228 RGCdNMCtyCiVpftrGre-Rsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K 306 (552)
T KOG2492|consen 228 RGCDNMCTYCIVPFTRGRE-RSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK 306 (552)
T ss_pred hccccccceEEEeccCCcc-cCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeeccc
Confidence 4789999999876655544 55778999999987653210 11111 11233333333321
Q ss_pred ---HHHHHHHHHHHHHcccCCCceeEEEe-CCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHH
Q psy2378 684 ---TGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757 (956)
Q Consensus 684 ---~~l~~ll~~i~~~~~~~~~~eitle~-np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~a 757 (956)
-.+..|++.+... .+...|.+.. +|.+.++|+++++++.. |+-+++.+||+|.++|+.|.|+++.+.+.+.
T Consensus 307 ~gGl~Fa~LLd~vs~~---~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~l 383 (552)
T KOG2492|consen 307 QGGLRFAHLLDQVSRA---DPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLEL 383 (552)
T ss_pred CCCccHHHHHHHHhhh---CcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhH
Confidence 1234466666554 3445555555 78899999999998864 7899999999999999999999999999999
Q ss_pred HHHHHhc--CCeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCC
Q psy2378 758 IEIAKQY--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 821 (956)
Q Consensus 758 i~~l~~~--~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~ 821 (956)
+..++.. +..++.|||.|+=|+|+++.++|+-.+.+.+-+.+.+|.|+...+|..|....-+.|
T Consensus 384 v~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvp 449 (552)
T KOG2492|consen 384 VAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVP 449 (552)
T ss_pred HHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhccccc
Confidence 9999997 677899999999999999999999999999999999999999999998876433333
No 173
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.33 E-value=1.5e-11 Score=137.47 Aligned_cols=199 Identities=12% Similarity=0.037 Sum_probs=144.8
Q ss_pred CCCcceeeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEecCC-CCCCC---------------CHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFIGGG-TPSLI---------------SDTGL 686 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~fggg-tPs~L---------------~~~~l 686 (956)
.-.|+..|.||.+.+..+... .....+.|+++++...+. ++..+.+.+| +|..- ..+++
T Consensus 11 tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~----G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~ 86 (322)
T TIGR03550 11 TRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAA----GCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYL 86 (322)
T ss_pred ccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHC----CCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHH
Confidence 568999999999877655432 244578888888765442 3455666544 45431 12445
Q ss_pred HHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCC----CHHHHHHHHHHHH
Q psy2378 687 DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH----DSKQAKYAIEIAK 762 (956)
Q Consensus 687 ~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~----~~~~~~~ai~~l~ 762 (956)
..+++.+++..++ ...+++..++++.++.|+++|+. +.+.+||+++..++.+++.+ +.++..+.++.++
T Consensus 87 ~~~~~~i~~e~~~------~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 87 RELCELALEETGL------LPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHhcCC------ccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 5555666543222 22377888999999999999986 58889999999887776655 4577889999999
Q ss_pred hcCCeeEEEEeecCCCCCHHHHHHHHHHHHccC-----CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 763 ~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~-----~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
+.|+.++.++|||+ |||.+++.+++..+.+++ +..+.+++|.|.||||+.... .++..+..++....+-+|
T Consensus 160 ~~Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~---~~s~~e~lr~iAv~Rl~l 235 (322)
T TIGR03550 160 RLKIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHP---EPSLEEMLRTVAVARLIL 235 (322)
T ss_pred HcCCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCC---CCCHHHHHHHHHHHHHHc
Confidence 99999999999997 999999999999999887 677788999999999997542 345555444444443333
No 174
>PRK15108 biotin synthase; Provisional
Probab=99.33 E-value=4.2e-11 Score=134.68 Aligned_cols=199 Identities=9% Similarity=0.027 Sum_probs=148.4
Q ss_pred CCCCcceeeeeeecccccCC-cchH--HHHHHHHHHHhhhcccccccceeEEEecCC--CCCCCCHHHHHHHHHHHHHHc
Q psy2378 623 KIPYKVIINEAIELVKSFGN-IDEK--KYLEALLIDVELSLPIILNRKIHTIFIGGG--TPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~-~~~~--~~v~~vl~eI~~~~~~~~~~~i~~i~fggg--tPs~L~~~~l~~ll~~i~~~~ 697 (956)
..-.|+..|.||........ .... -..+.+++.++...+ .+++++.++.+ .|+....+++..+++.+++.
T Consensus 49 ~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~----~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~- 123 (345)
T PRK15108 49 KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA----AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM- 123 (345)
T ss_pred ECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH----cCCCEEEEEecCCCCCcchHHHHHHHHHHHHhC-
Confidence 46899999999987643211 1111 224566665554322 34667777654 56555556777777777653
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCC
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALP 777 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlP 777 (956)
. ..+. ++...++++.++.|+++|++++.+.++| +++.-..+..+++.++..+.++.+++.|+.++..+|+|+
T Consensus 124 ~----i~v~--~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl- 195 (345)
T PRK15108 124 G----LETC--MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL- 195 (345)
T ss_pred C----CEEE--EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC-
Confidence 2 2333 3455678999999999999999999999 888888888889999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHcc--CCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 778 NQTLSELMLDLNYAIQY--SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l--~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
|||.++..+.+..+.++ .++.|.+..+.|.||||+.... ..+..+..+.....+-++
T Consensus 196 gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~---~~~~~e~lr~iAi~Rl~l 254 (345)
T PRK15108 196 GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADND---DVDAFDFIRTIAVARIMM 254 (345)
T ss_pred CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCC---CCCHHHHHHHHHHHHHHC
Confidence 99999999999999999 7789999999999999997653 234555555544444333
No 175
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.30 E-value=4.3e-11 Score=132.32 Aligned_cols=186 Identities=9% Similarity=0.120 Sum_probs=133.7
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCHHHHHHHHHHHHHcC
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 89 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G 89 (956)
+-||+.|||.++|+..+-.-+.+.|+.+.+=....+.+.+-..-.++-. ..+.|+.+.++...|. +.+..+.+.+.|
T Consensus 11 ~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~--~t~~pfgvn~~~~~~~-~~~~~~~~~~~~ 87 (307)
T TIGR03151 11 EYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKE--LTDKPFGVNIMLLSPF-VDELVDLVIEEK 87 (307)
T ss_pred CCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHH--hcCCCcEEeeecCCCC-HHHHHHHHHhCC
Confidence 3499999999999999888778888766554443333333211111111 1257999998865554 334445566789
Q ss_pred CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Q psy2378 90 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV 169 (956)
Q Consensus 90 ~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~v 169 (956)
++.|.+++|.| .++++.+++. +++|...+.. .+.++.++++|+|.|.+
T Consensus 88 v~~v~~~~g~p--------------------~~~i~~lk~~-g~~v~~~v~s-----------~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 88 VPVVTTGAGNP--------------------GKYIPRLKEN-GVKVIPVVAS-----------VALAKRMEKAGADAVIA 135 (307)
T ss_pred CCEEEEcCCCc--------------------HHHHHHHHHc-CCEEEEEcCC-----------HHHHHHHHHcCCCEEEE
Confidence 99999887766 1467777765 7777655422 46789999999999999
Q ss_pred cccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCC
Q psy2378 170 HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP 239 (956)
Q Consensus 170 h~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P 239 (956)
|++.. +|+.+. ..+|..+.++++.+ ++|||++|||.+++++.+++.. ||+|++|+.++.-+
T Consensus 136 ~g~ea--gGh~g~------~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 136 EGMES--GGHIGE------LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred ECccc--CCCCCC------CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhccc
Confidence 99852 343322 23799999999988 7999999999999999999988 99999999655433
No 176
>PLN02428 lipoic acid synthase
Probab=99.28 E-value=1.1e-10 Score=129.25 Aligned_cols=216 Identities=9% Similarity=-0.001 Sum_probs=144.9
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCC---CCCCHHHHHHHHHHHHHH
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP---SLISDTGLDYLLKNIKKL 696 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtP---s~L~~~~l~~ll~~i~~~ 696 (956)
||.--..|+..|.||.+....+... .+.+.+.+.++...+ ..++.+.+.+++- .-....++.++++.|++.
T Consensus 105 ~milg~gCtr~CrFCav~~~~~p~~--~d~~Ep~~vA~~v~~----~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~ 178 (349)
T PLN02428 105 IMILGDTCTRGCRFCAVKTSRTPPP--PDPDEPENVAEAIAS----WGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQL 178 (349)
T ss_pred EEEecCCCCCCCCCCcCCCCCCCCC--CChhhHHHHHHHHHH----cCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHh
Confidence 3333468999999999875443221 112333322222211 1234555554421 123345677788888765
Q ss_pred cccCCCceeEEEe-CCCCC-CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhc--CCeeEEE
Q psy2378 697 LLFKKNISITLEA-NPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQY--FNNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitle~-np~~i-t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~-R~~~~~~~~~ai~~l~~~--~~~i~~d 771 (956)
.+ .+.+++ .|+.. ++|.++.|+++|+..+..++|+ ++++.+.++ +.++.++..++++.+++. |+.+...
T Consensus 179 ~P-----~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg 252 (349)
T PLN02428 179 KP-----EILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTS 252 (349)
T ss_pred CC-----CcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Confidence 32 456666 57654 8999999999999999999997 889999999 789999999999999998 8889999
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhc
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 851 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~fa 851 (956)
||+|+ |||.+++.++++++.+++++.+.+-+|. .|...=..... ...++ .|+...+.-.+.||.+-+-.-+.
T Consensus 253 ~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~h~~v~~--~v~p~----~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 253 IMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKRHLPVKE--YVTPE----KFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred EEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CCCcceeeeec--ccCHH----HHHHHHHHHHHcCCceEEecCcc
Confidence 99999 9999999999999999999999887764 33211111111 12222 24444455666788754333344
Q ss_pred CCCC
Q psy2378 852 KTGY 855 (956)
Q Consensus 852 r~g~ 855 (956)
|..|
T Consensus 325 rssy 328 (349)
T PLN02428 325 RSSY 328 (349)
T ss_pred cchh
Confidence 4333
No 177
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.27 E-value=1.5e-10 Score=125.24 Aligned_cols=179 Identities=9% Similarity=0.151 Sum_probs=124.9
Q ss_pred HHHcCCCcEEEecccccccccCCchhcc-ccCC-CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeC
Q psy2378 30 HRQITRYSWLYTEMFTTQAILGNKKHCL-DFNA-EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG 107 (956)
Q Consensus 30 ~~~~g~~~l~~tem~~~~~l~~~~~~~~-~~~~-~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~ 107 (956)
....|...+.+|..-.+....+....++ .+.. ...| +|+.| .+..+.++.+. ..+|++.|.||
T Consensus 39 ~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~p--v~~gG-Gi~s~~d~~~l-~~~G~~~vvig----------- 103 (258)
T PRK01033 39 FNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMP--LCYGG-GIKTLEQAKKI-FSLGVEKVSIN----------- 103 (258)
T ss_pred HHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCC--EEECC-CCCCHHHHHHH-HHCCCCEEEEC-----------
Confidence 3566755677777644433322211111 2211 2334 57765 45455554444 36799999997
Q ss_pred cccccccCChHHHHHHHHHHhhccCccEEEEeccC-----------CCCCCcHHHHHHHHHHHHHcCCCEEEEccccccc
Q psy2378 108 FFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-----------IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 176 (956)
Q Consensus 108 ~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-----------~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~ 176 (956)
++++.+|+++.++++...+. .+++++++|.| |.+... ....++++.+++.|++.+.+|.++.
T Consensus 104 ---s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~-~~~~e~~~~~~~~g~~~ii~~~i~~-- 176 (258)
T PRK01033 104 ---TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLK-KDPLELAKEYEALGAGEILLNSIDR-- 176 (258)
T ss_pred ---hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCC-CCHHHHHHHHHHcCCCEEEEEccCC--
Confidence 55778999999999998533 26777777655 211111 1357899999999999999998873
Q ss_pred ccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhh-h-cCEEEEccccccC
Q psy2378 177 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN-Y-IDGVMLGREAYKN 238 (956)
Q Consensus 177 ~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~-~-ad~VmiGR~~l~~ 238 (956)
.+.+.+ .||+.++++++.+ ++|||++|||.|.+|+.++++ . ||+|++|+++.-.
T Consensus 177 ------~G~~~G-~d~~~i~~~~~~~-~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 177 ------DGTMKG-YDLELLKSFRNAL-KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred ------CCCcCC-CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 222333 4999999999986 799999999999999999995 4 9999999999887
No 178
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.26 E-value=1.9e-10 Score=132.91 Aligned_cols=184 Identities=14% Similarity=0.071 Sum_probs=141.1
Q ss_pred CCCcceeeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEe-cCCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 624 IPYKVIINEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFI-GGGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~f-gggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
..+|+..|.||.+.+...... ..-..+.++++++...+ .+++++.+ +|.+|...+.+++.++++.|++...-..
T Consensus 91 SN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~----~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g 166 (469)
T PRK09613 91 SNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED----MGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNG 166 (469)
T ss_pred cCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH----CCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccC
Confidence 589999999999876543221 22246778888776543 23555655 6667777888888888888887532111
Q ss_pred -CceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHHHHhcCCe-eEEEEeecC
Q psy2378 702 -NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAKQYFNN-FNLDLIYAL 776 (956)
Q Consensus 702 -~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~l~~~~~~-i~~dlI~Gl 776 (956)
...+++++-| ++.|.++.|+++|+.++.+-.||.|.+..+.++ +.|+.++-.++++.++++|+. |++.+|+|+
T Consensus 167 ~i~~v~inig~--lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GL 244 (469)
T PRK09613 167 EIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGL 244 (469)
T ss_pred cceeeEEEeec--CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcC
Confidence 2356666544 789999999999999999999999999999984 578999999999999999886 999999999
Q ss_pred CCCCHHHHHHHHHHHHcc------CCCeEEEEeeeccCCccccc
Q psy2378 777 PNQTLSELMLDLNYAIQY------SPPHLSLYSLTIEPNTYFFK 814 (956)
Q Consensus 777 PgqT~e~~~~tl~~~~~l------~~~~i~~y~l~~~pgT~l~~ 814 (956)
|++..|.+. .+..+..+ +|+.|++-.|.|.+|||+..
T Consensus 245 ge~~~E~~~-l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~ 287 (469)
T PRK09613 245 YDYKFEVLG-LLMHAEHLEERFGVGPHTISVPRLRPADGSDLEN 287 (469)
T ss_pred CCCHHHHHH-HHHHHHHHHHhhCCCCccccccceecCCCCCccc
Confidence 987666554 34444444 78889999999999999854
No 179
>KOG4355|consensus
Probab=99.21 E-value=6.6e-11 Score=126.28 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=86.4
Q ss_pred CeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--CCeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeee
Q psy2378 728 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 805 (956)
Q Consensus 728 ~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~--~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~ 805 (956)
.-+++.|||++|.+|-.|+|.+...+....+..+++. |+.|-+|+|.|||+||.|+|++|++.+.++++..+.+.+|.
T Consensus 299 sflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfy 378 (547)
T KOG4355|consen 299 SFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFY 378 (547)
T ss_pred EEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcC
Confidence 3578999999999999999999999999999999996 89999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCC
Q psy2378 806 IEPNTYFFKYPPL 818 (956)
Q Consensus 806 ~~pgT~l~~~~~~ 818 (956)
|+||||.+++.+.
T Consensus 379 PRpGTPAAkmkki 391 (547)
T KOG4355|consen 379 PRPGTPAAKMKKI 391 (547)
T ss_pred CCCCChHHhhhcc
Confidence 9999999998654
No 180
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.16 E-value=4.3e-10 Score=121.05 Aligned_cols=188 Identities=11% Similarity=0.142 Sum_probs=124.0
Q ss_pred HHHHHcCCCcEEEecccccccccCCchhc-cccCC-CCCCEEEEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcce
Q psy2378 28 MFHRQITRYSWLYTEMFTTQAILGNKKHC-LDFNA-EEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNR 103 (956)
Q Consensus 28 ~~~~~~g~~~l~~tem~~~~~l~~~~~~~-~~~~~-~~~p~~vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~ 103 (956)
......|...++++..-.+..-.+....+ ..+.. -+.| +++.| .+++++.+.. ..|+|+|.++
T Consensus 34 ~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~p--v~~~GGI~s~~d~~~~l----~~G~~~v~ig------- 100 (243)
T cd04731 34 KRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIP--LTVGGGIRSLEDARRLL----RAGADKVSIN------- 100 (243)
T ss_pred HHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCC--EEEeCCCCCHHHHHHHH----HcCCceEEEC-------
Confidence 34456675457777755432111211111 11111 1234 44544 3455444333 3699999886
Q ss_pred eeeCcccccccCChHHHHHHHHHHhh-ccCccEEEEecc----------CCCCCCcHHHHHHHHHHHHHcCCCEEEEccc
Q psy2378 104 VQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRI----------GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172 (956)
Q Consensus 104 ~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~----------g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r 172 (956)
..++.+|+.+.++++.+.+ .+-+++.+|.|. +++... .+..++++.+++.|+++|.+|++
T Consensus 101 -------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~--~~~~~~~~~l~~~G~d~i~v~~i 171 (243)
T cd04731 101 -------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG--LDAVEWAKEVEELGAGEILLTSM 171 (243)
T ss_pred -------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC--CCHHHHHHHHHHCCCCEEEEecc
Confidence 4566789999999999863 455666666443 333322 24678999999999999999998
Q ss_pred ccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHH
Q psy2378 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
+. .| .....+|+.+.++++.+ ++|||++|||.+++|++++++. ||+||+||+++..-.=+.++++
T Consensus 172 ~~--~g-------~~~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~ 238 (243)
T cd04731 172 DR--DG-------TKKGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKE 238 (243)
T ss_pred CC--CC-------CCCCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHH
Confidence 73 11 11235899999999987 7999999999999999999985 9999999988765444444443
No 181
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.16 E-value=3.4e-10 Score=124.10 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=141.5
Q ss_pred HHhhcccCCCCCcce-eeeeeecccccCCcchHHHHHHHHHHHhhhcccc----c-ccceeEEEecC----CCCCCCCHH
Q psy2378 615 TYELKSHYKIPYKVI-INEAIELVKSFGNIDEKKYLEALLIDVELSLPII----L-NRKIHTIFIGG----GTPSLISDT 684 (956)
Q Consensus 615 ~yel~~~~~~P~c~~-~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~----~-~~~i~~i~fgg----gtPs~L~~~ 684 (956)
++||--..+||.... .|+||.-+-. + ....+..++|++|++.+.... . +++.+-+.+++ +.-.--+++
T Consensus 184 i~EiETyRGC~r~~~ggCSFCtEp~~-g-~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPe 261 (560)
T COG1031 184 ICEIETYRGCPRRVSGGCSFCTEPVR-G-RPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPE 261 (560)
T ss_pred EEEEeeccCCcccccCCCccccCcCc-C-CcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHH
Confidence 366654455554432 4999976554 3 334566899999998764321 1 12223333332 211133578
Q ss_pred HHHHHHHHHHHHcccCCCceeEE-EeCCCCC------CHHHHHHHHHcCC--CeEEecCCCCCHHHHHHhCCCCCHHHHH
Q psy2378 685 GLDYLLKNIKKLLLFKKNISITL-EANPSTF------EIEKFHSYSIIGI--NRLSIGIQSFNNKYLNILGRTHDSKQAK 755 (956)
Q Consensus 685 ~l~~ll~~i~~~~~~~~~~eitl-e~np~~i------t~e~L~~L~~~Gv--~risiGvQS~~d~~L~~~~R~~~~~~~~ 755 (956)
.+++|+..++...+-. ..+.+ .+||..+ +.+.++.+-+.|- |-..+|+||+|+++.+.-|=..+++++.
T Consensus 262 alekL~~Gir~~AP~l--~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl 339 (560)
T COG1031 262 ALEKLFRGIRNVAPNL--KTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVL 339 (560)
T ss_pred HHHHHHHHHHhhCCCC--eeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHH
Confidence 8999999998864321 12332 2377765 4566777777774 6799999999999999999999999999
Q ss_pred HHHHHHHhcCC----------eeEEEEeecCCCCCHHHHHHHHHHHHc-----cCCCeEEEEeeeccCCcccccCC
Q psy2378 756 YAIEIAKQYFN----------NFNLDLIYALPNQTLSELMLDLNYAIQ-----YSPPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 756 ~ai~~l~~~~~----------~i~~dlI~GlPgqT~e~~~~tl~~~~~-----l~~~~i~~y~l~~~pgT~l~~~~ 816 (956)
+|++.+.+.|- --.+.|++||||||.|+++-+.+++.+ +-+.+|++-+..++||||++.+.
T Consensus 340 ~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~ 415 (560)
T COG1031 340 EAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERG 415 (560)
T ss_pred HHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhhh
Confidence 99999988521 236889999999999999999999876 34789999999999999999763
No 182
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.15 E-value=3.9e-10 Score=128.47 Aligned_cols=183 Identities=12% Similarity=0.036 Sum_probs=138.5
Q ss_pred CCCcceeeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEecCC-CCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 624 IPYKVIINEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFIGGG-TPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~fggg-tPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
...|+..|.||.+.+..+... ..-..+.+++.++...+ ..+.++.+.+| .|..-..+++.++++.+++.++
T Consensus 67 Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~----~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~--- 139 (371)
T PRK07360 67 TNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK----RGATEVCIQGGLHPAADSLEFYLEILEAIKEEFP--- 139 (371)
T ss_pred chhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh----CCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCC---
Confidence 578999999998866532211 11234555555544332 34778888877 5554336778888888887542
Q ss_pred CceeEEEe-----------CCCCCCHHHHHHHHHcCCCeEE-ecCCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhcCCee
Q psy2378 702 NISITLEA-----------NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQYFNNF 768 (956)
Q Consensus 702 ~~eitle~-----------np~~it~e~L~~L~~~Gv~ris-iGvQS~~d~~L~~~~R~-~~~~~~~~ai~~l~~~~~~i 768 (956)
.+.+.+ +....+++.++.|+++|++++. -|-+++++++.+.+... .+.++..++++.+++.|+.+
T Consensus 140 --~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~ 217 (371)
T PRK07360 140 --DIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPT 217 (371)
T ss_pred --CcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 122222 3455678889999999999985 56788999999888764 68899999999999999999
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc----CCcccccCC
Q psy2378 769 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYP 816 (956)
Q Consensus 769 ~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~----pgT~l~~~~ 816 (956)
+..+|+|+ |||.++..+.+.++.+++++...+..+.|. +|||+....
T Consensus 218 ~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 218 TSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred eeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccc
Confidence 99999998 999999999999999999998888787774 499997653
No 183
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.15 E-value=8e-10 Score=118.09 Aligned_cols=176 Identities=8% Similarity=0.101 Sum_probs=119.3
Q ss_pred HHHcCCCcEEEecccccccccCCchhcc-ccC-CCCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeC
Q psy2378 30 HRQITRYSWLYTEMFTTQAILGNKKHCL-DFN-AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG 107 (956)
Q Consensus 30 ~~~~g~~~l~~tem~~~~~l~~~~~~~~-~~~-~~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~ 107 (956)
...+|...+.+|..-.+....+....++ .+. ..+.| +|+ |+.+..+.++.+ +.+.|++.|.+|
T Consensus 39 ~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~p--v~~-~ggi~~~~d~~~-~~~~G~~~vilg----------- 103 (232)
T TIGR03572 39 YNAKGADELIVLDIDASKRGREPLFELISNLAEECFMP--LTV-GGGIRSLEDAKK-LLSLGADKVSIN----------- 103 (232)
T ss_pred HHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCC--EEE-ECCCCCHHHHHH-HHHcCCCEEEEC-----------
Confidence 3566755577777543322222211211 111 12344 455 555555555554 445699999886
Q ss_pred cccccccCChHHHHHHHHHHhhccCccEEEEeccC------------CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc
Q psy2378 108 FFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG------------IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 175 (956)
Q Consensus 108 ~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g------------~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~ 175 (956)
++++++|+++.++++...+. .++++++++.+ |..... .+..++++.++++|+++|.+|+++.
T Consensus 104 ---~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~G~d~i~i~~i~~- 177 (232)
T TIGR03572 104 ---TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATG-RDPVEWAREAEQLGAGEILLNSIDR- 177 (232)
T ss_pred ---hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCC-CCHHHHHHHHHHcCCCEEEEeCCCc-
Confidence 56788999999999887443 25677777663 221111 2367899999999999999999763
Q ss_pred cccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEcccc
Q psy2378 176 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA 235 (956)
Q Consensus 176 ~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~ 235 (956)
.| .. ...+|+.++++++.+ ++||+++|||.|++|+++++.. ||+|++|+++
T Consensus 178 -~g------~~-~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 178 -DG------TM-KGYDLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred -cC------Cc-CCCCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 11 11 235899999999987 7999999999999999996654 9999999975
No 184
>PRK05926 hypothetical protein; Provisional
Probab=99.14 E-value=9e-10 Score=124.50 Aligned_cols=181 Identities=12% Similarity=0.074 Sum_probs=139.8
Q ss_pred CCCCcceeeeeeecccccCCcch-HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDE-KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~-~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
.+-.|+..|.||.+.+..+.... .-..+.++++++.. . ..+.++.+.+|...-++.+++..+++.|++.++
T Consensus 74 ~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~----~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p--- 145 (370)
T PRK05926 74 PTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P----SPITETHIVAGCFPSCNLAYYEELFSKIKQNFP--- 145 (370)
T ss_pred cCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h----cCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCC---
Confidence 46789999999986553332221 12256777777654 2 236778877666555788889999999988753
Q ss_pred CceeEEEe-C----------CCCCCHHHHHHHHHcCCCeEEe-cCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCee
Q psy2378 702 NISITLEA-N----------PSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQYFNNF 768 (956)
Q Consensus 702 ~~eitle~-n----------p~~it~e~L~~L~~~Gv~risi-GvQS~~d~~L~~~~-R~~~~~~~~~ai~~l~~~~~~i 768 (956)
.+.+.+ . ....++|.++.|+++|++++.. |.|++++++++.+. ...+.++..++++.+++.|+.+
T Consensus 146 --~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~ 223 (370)
T PRK05926 146 --DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPS 223 (370)
T ss_pred --CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 122111 1 1224578899999999999997 69999999999886 4678899999999999999999
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeec----cCCccccc
Q psy2378 769 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI----EPNTYFFK 814 (956)
Q Consensus 769 ~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~----~pgT~l~~ 814 (956)
+..+||| +|||.++..+.+..+.+++++.+.+..|.| .++||+..
T Consensus 224 ~sgmi~G-~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 224 NATMLCY-HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred cCceEEe-CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 9987777 799999999999999999999999999998 67899864
No 185
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.14 E-value=6.4e-10 Score=119.59 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=113.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHh-hccCccEEEE---ec
Q psy2378 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-DSVEIDITVK---HR 140 (956)
Q Consensus 65 p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vK---ir 140 (956)
++-+|+.| ....+.++. .+.++|+|.|-+ |+.++++|+++.++++.+. +.+-+.+++| +.
T Consensus 76 ~~~l~v~G-Gi~~~~~~~-~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~ 139 (241)
T PRK13585 76 GVPVQLGG-GIRSAEDAA-SLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVV 139 (241)
T ss_pred CCcEEEcC-CcCCHHHHH-HHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEE
Confidence 45566643 333333332 233589999866 6667889999999988873 3332233332 11
Q ss_pred -cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 141 -IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 141 -~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
.||..... .+..++++.+++.|++.|++|.++. .| .. .+.+|+.++++++.+ ++||+++|||.|++|+
T Consensus 140 ~~g~~~~~~-~~~~~~~~~~~~~G~~~i~~~~~~~--~g------~~-~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di 208 (241)
T PRK13585 140 IKGWTEKTG-YTPVEAAKRFEELGAGSILFTNVDV--EG------LL-EGVNTEPVKELVDSV-DIPVIASGGVTTLDDL 208 (241)
T ss_pred ECCCcccCC-CCHHHHHHHHHHcCCCEEEEEeecC--CC------Cc-CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHH
Confidence 26654321 1367899999999999999998862 11 11 236999999999988 7999999999999999
Q ss_pred HHHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 220 DLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 220 ~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
.+++.. |++|++|++++.+|..+.++...+
T Consensus 209 ~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~~ 239 (241)
T PRK13585 209 RALKEAGAAGVVVGSALYKGKFTLEEAIEAV 239 (241)
T ss_pred HHHHHcCCCEEEEEHHHhcCCcCHHHHHHHh
Confidence 998766 999999999999999988877543
No 186
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.14 E-value=2.3e-09 Score=119.59 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=132.8
Q ss_pred CCCcceeeeeeecccccCCcc----hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 624 IPYKVIINEAIELVKSFGNID----EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~----~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
...|+..|.||.-....+... ....+..+++.++.. ..+..+.|.||.|..++...+.++++.+++. +
T Consensus 95 T~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~------~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i-~- 166 (321)
T TIGR03822 95 VHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADH------PEIWEVILTGGDPLVLSPRRLGDIMARLAAI-D- 166 (321)
T ss_pred cCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhC------CCccEEEEeCCCcccCCHHHHHHHHHHHHhC-C-
Confidence 579999999997543222211 223344555555421 2467899999999999888899999999873 2
Q ss_pred CCCceeEEEe-----CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEE-EEe
Q psy2378 700 KKNISITLEA-----NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL-DLI 773 (956)
Q Consensus 700 ~~~~eitle~-----np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~-dlI 773 (956)
....+++.+ +|..+++++++.|++.|+ .+.+++++.+++.+ .+++.++++.++++|+.+.. .++
T Consensus 167 -~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~vL 236 (321)
T TIGR03822 167 -HVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQSVL 236 (321)
T ss_pred -CccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEeeE
Confidence 122334433 788899999999999995 48999999887654 37899999999999887755 456
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCccccc
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 814 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~ 814 (956)
+.-.+++.+++.+..+++.++++....+|.+.+.+||..++
T Consensus 237 l~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~ 277 (321)
T TIGR03822 237 LRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFR 277 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCccccc
Confidence 65579999999999999999999999999999999986654
No 187
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.13 E-value=1.7e-09 Score=120.83 Aligned_cols=202 Identities=15% Similarity=0.142 Sum_probs=135.3
Q ss_pred ccCCCceEEccCcCc------CCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecC-CCHHHHH
Q psy2378 7 KYNKRKISIAPMMNL------TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD-NEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~------td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g-~~~~~~~ 79 (956)
.| .-|+++|||+.- .+...-+-|.+.|- -.+.+- .+...+ +.+-.. ..+.|.-.||.- .|.+...
T Consensus 78 ~~-~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~-~~~lSt-~ss~sl----Eev~~~-~~~~~~wfQlY~~~dr~~~~ 149 (367)
T TIGR02708 78 KL-KSPFIMAPVAAHKLANEQGEVATARGVSEFGS-IYTTSS-YSTADL----PEISEA-LNGTPHWFQFYMSKDDGINR 149 (367)
T ss_pred cc-ccccccCcHHHhhccCCcHHHHHHHHHHHcCC-Ceeecc-cccCCH----HHHHhh-cCCCceEEEEeccCCHHHHH
Confidence 45 679999999653 23444455566662 233222 232222 222222 124689999985 6677778
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeee---------------------Ccccccc-----cCChHHHHHHHHHHhhccCc
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQN---------------------GFFGAIL-----MTKPLLVSDCIKAMRDSVEI 133 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~---------------------~~~G~~l-----~~~~~~~~eiv~~v~~~~~~ 133 (956)
+..++++++||.+|=+..-+|..-.|. .+.+... ..++.+--+-++.+++.+++
T Consensus 150 ~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~ 229 (367)
T TIGR02708 150 DIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGL 229 (367)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCC
Confidence 888999999999998865554321110 0111100 01222333668888989999
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEE--cccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEEEe
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIIN 210 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~v--h~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi~n 210 (956)
||+|| |.. ..+.|+.+.++|+|+|.| ||+. +.+..++.|+.+.++++.+ .++|||++
T Consensus 230 PvivK---Gv~-------~~eda~~a~~~Gvd~I~VS~HGGr----------q~~~~~a~~~~L~ei~~av~~~i~vi~d 289 (367)
T TIGR02708 230 PVYVK---GPQ-------CPEDADRALKAGASGIWVTNHGGR----------QLDGGPAAFDSLQEVAEAVDKRVPIVFD 289 (367)
T ss_pred CEEEe---CCC-------CHHHHHHHHHcCcCEEEECCcCcc----------CCCCCCcHHHHHHHHHHHhCCCCcEEee
Confidence 99999 322 246789999999998866 5543 2233467899999999877 35999999
Q ss_pred cCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 211 GGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 211 GgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
|||.+..|+.++|+. ||+||+||++|
T Consensus 290 GGIr~g~Dv~KaLalGAd~V~igR~~l 316 (367)
T TIGR02708 290 SGVRRGQHVFKALASGADLVALGRPVI 316 (367)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 999999999999998 99999999755
No 188
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.13 E-value=1e-09 Score=122.46 Aligned_cols=205 Identities=15% Similarity=0.136 Sum_probs=136.8
Q ss_pred ccCCCceEEccCcCcC------CHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecC-CCHHHHH
Q psy2378 7 KYNKRKISIAPMMNLT------DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD-NEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~t------d~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g-~~~~~~~ 79 (956)
+| .-|+++|||.... +...-+-+.+.| .-.+.+-+ +...+ +++.... .+.+..+|++- .|.+...
T Consensus 70 ~~-~~P~~iaP~g~~~l~~p~ge~a~AraA~~~g-i~~~lSt~-s~~s~----Eei~~~~-~~~~~wfQlY~~~d~~~~~ 141 (351)
T cd04737 70 KL-KTPIIMAPIAAHGLAHATGEVATARGMAEVG-SLFSISTY-SNTSL----EEIAKAS-NGGPKWFQLYMSKDDGFNR 141 (351)
T ss_pred cc-cchhhhHHHHHHHhcCCchHHHHHHHHHHcC-CCEEecCC-CCCCH----HHHHHhc-CCCCeEEEEeecCCHHHHH
Confidence 45 6799999996421 233334445555 22332222 22222 2222222 24589999984 6778888
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeeeC----c------------------cccccc-----CChHHHHHHHHHHhhccC
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQNG----F------------------FGAILM-----TKPLLVSDCIKAMRDSVE 132 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~~----~------------------~G~~l~-----~~~~~~~eiv~~v~~~~~ 132 (956)
+..++++.+||.+|=+...+|..-.|.. + .|.... .++.+.-+.++.+++.++
T Consensus 142 ~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~ 221 (351)
T cd04737 142 SLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISG 221 (351)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhC
Confidence 8889999999999988776654322200 0 000000 122344577889999999
Q ss_pred ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEE--cccccccccCCCCCCCCCCcCcHHHHHHHHHhCC-CceEEE
Q psy2378 133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIII 209 (956)
Q Consensus 133 ~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~v--h~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ipVi~ 209 (956)
.||.+|- .. ..+.++.+.++|+|+|.| |++... ...+..++.+.++++.+. ++|||+
T Consensus 222 ~PvivKg---v~-------~~~dA~~a~~~G~d~I~vsnhGGr~l----------d~~~~~~~~l~~i~~a~~~~i~vi~ 281 (351)
T cd04737 222 LPVIVKG---IQ-------SPEDADVAINAGADGIWVSNHGGRQL----------DGGPASFDSLPEIAEAVNHRVPIIF 281 (351)
T ss_pred CcEEEec---CC-------CHHHHHHHHHcCCCEEEEeCCCCccC----------CCCchHHHHHHHHHHHhCCCCeEEE
Confidence 9999992 21 236788999999999999 655321 123567889999988763 599999
Q ss_pred ecCCCCHHHHHHHhhh-cCEEEEccccccCC
Q psy2378 210 NGGIKTKKEIDLHLNY-IDGVMLGREAYKNP 239 (956)
Q Consensus 210 nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P 239 (956)
+|||.+..|+.++|.. ||+||+||+++...
T Consensus 282 dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 282 DSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred ECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 9999999999999998 99999999877644
No 189
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.10 E-value=7.5e-10 Score=118.54 Aligned_cols=152 Identities=16% Similarity=0.302 Sum_probs=109.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhh-ccCccEEEE----e
Q psy2378 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVK----H 139 (956)
Q Consensus 65 p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vK----i 139 (956)
++-+|+.|. .....++. .+.++|+|.|=+ |+.++.+|+++.++.+.+.+ .+-+++.+| .
T Consensus 73 ~~pv~~~Gg-I~~~e~~~-~~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~ 136 (234)
T cd04732 73 GIPVQVGGG-IRSLEDIE-RLLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVA 136 (234)
T ss_pred CCCEEEeCC-cCCHHHHH-HHHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE
Confidence 344777664 33333333 333579999843 56678899999999998764 333333333 2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
+.+|..... .+..++++.+++.|++.+++|.++. .+.+. ..+|+.++++++.+ ++||+++|||.+++|+
T Consensus 137 ~~~~~~~~~-~~~~~~~~~~~~~ga~~iii~~~~~--------~g~~~-g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di 205 (234)
T cd04732 137 TKGWLETSE-VSLEELAKRFEELGVKAIIYTDISR--------DGTLS-GPNFELYKELAAAT-GIPVIASGGVSSLDDI 205 (234)
T ss_pred ECCCeeecC-CCHHHHHHHHHHcCCCEEEEEeecC--------CCccC-CCCHHHHHHHHHhc-CCCEEEecCCCCHHHH
Confidence 234532111 2467899999999999999998763 11222 36899999999987 7999999999999999
Q ss_pred HHHhhh-cCEEEEccccccCCcchH
Q psy2378 220 DLHLNY-IDGVMLGREAYKNPFLMS 243 (956)
Q Consensus 220 ~~~l~~-ad~VmiGR~~l~~P~l~~ 243 (956)
.++++. ||+||+||+++.++--+.
T Consensus 206 ~~~~~~Ga~gv~vg~~~~~~~~~~~ 230 (234)
T cd04732 206 KALKELGVAGVIVGKALYEGKITLE 230 (234)
T ss_pred HHHHHCCCCEEEEeHHHHcCCCCHH
Confidence 999988 999999999999985443
No 190
>PRK08444 hypothetical protein; Provisional
Probab=99.10 E-value=1.1e-09 Score=123.03 Aligned_cols=201 Identities=12% Similarity=0.025 Sum_probs=148.3
Q ss_pred CCCcceeeeeeecccccCCcch-HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE-KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~-~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.|...|.||.+.+..+.... .-..+.+++.++...+ .++.++.+.+|.....+.+++.++++.|++.++
T Consensus 56 TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~----~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p---- 127 (353)
T PRK08444 56 TNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK----RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYP---- 127 (353)
T ss_pred ccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH----CCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCC----
Confidence 5789999999998765443321 1124555555554332 346777776654344477778888888887643
Q ss_pred ceeEEEe-----------CCCCCCHHHHHHHHHcCCCeEEe-cCCCCCHHHHHHhCCCCCH-HHHHHHHHHHHhcCCeeE
Q psy2378 703 ISITLEA-----------NPSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGRTHDS-KQAKYAIEIAKQYFNNFN 769 (956)
Q Consensus 703 ~eitle~-----------np~~it~e~L~~L~~~Gv~risi-GvQS~~d~~L~~~~R~~~~-~~~~~ai~~l~~~~~~i~ 769 (956)
.+.+-+ .-....+|.++.|+++|+.++.- |.|.|+|++.+.+-..+.. ++..+.++.+++.|+.++
T Consensus 128 -~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~ 206 (353)
T PRK08444 128 -NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSN 206 (353)
T ss_pred -CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 233332 23344678999999999999887 6999999999999986654 788888899999999999
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc----CCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~----pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
..+|||++ ||.++..+.+..+.+++.+.+.+..|.|. +|||+... +.++..+..+.....+-+|
T Consensus 207 sg~l~G~g-Et~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~---~~~~~~e~Lr~iAi~Rl~L 274 (353)
T PRK08444 207 ATMLFGHI-ENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVE---KFPSSQEILKTIAISRILL 274 (353)
T ss_pred ceeEEecC-CCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCC---CCCCHHHHHHHHHHHHHhc
Confidence 99999998 99999999999999999999999999998 89999743 2355555444444443333
No 191
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.08 E-value=8.9e-10 Score=117.87 Aligned_cols=142 Identities=17% Similarity=0.309 Sum_probs=105.6
Q ss_pred EEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec----c
Q psy2378 68 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR----I 141 (956)
Q Consensus 68 vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~ 141 (956)
+|+.| .+.++.. .+.+.|+|.|= .|++++.+|+++.++++...+.+.+++.+|.+ .
T Consensus 77 v~~~GGI~~~ed~~----~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~ 138 (233)
T PRK00748 77 VQVGGGIRSLETVE----ALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATD 138 (233)
T ss_pred EEEcCCcCCHHHHH----HHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEc
Confidence 55644 3444443 33446888763 46778889999999999987665555555421 3
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~ 221 (956)
||..... .+..++++.+++.|++.|.+|.++. .+.+.+ .||+.++++++.+ ++|||++|||.|++|+++
T Consensus 139 g~~~~~~-~~~~e~~~~~~~~g~~~ii~~~~~~--------~g~~~G-~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~ 207 (233)
T PRK00748 139 GWLETSG-VTAEDLAKRFEDAGVKAIIYTDISR--------DGTLSG-PNVEATRELAAAV-PIPVIASGGVSSLDDIKA 207 (233)
T ss_pred cCeecCC-CCHHHHHHHHHhcCCCEEEEeeecC--------cCCcCC-CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHH
Confidence 5543211 2357899999999999999998873 222333 6999999999987 699999999999999999
Q ss_pred Hhhh--cCEEEEccccccC
Q psy2378 222 HLNY--IDGVMLGREAYKN 238 (956)
Q Consensus 222 ~l~~--ad~VmiGR~~l~~ 238 (956)
+++. ||+||+||+++..
T Consensus 208 ~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 208 LKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHcCCccEEEEEHHHHcC
Confidence 9986 9999999998765
No 192
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.07 E-value=4.4e-09 Score=117.51 Aligned_cols=209 Identities=16% Similarity=0.194 Sum_probs=136.7
Q ss_pred ccCCCceEEccCcC---cCCH---HHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec-CCCHHHHH
Q psy2378 7 KYNKRKISIAPMMN---LTDR---HCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~---~td~---~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~-g~~~~~~~ 79 (956)
++ +-|+++|||.. .... ..-+-|.+.| .-++.+-+ +...+ +.+......+.|+.+||. ..|.+...
T Consensus 62 ~~-~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~g-i~~~lss~-s~~s~----e~v~~~~~~~~~~w~Qly~~~d~~~~~ 134 (344)
T cd02922 62 KV-SLPFFISPAALAKLAHPDGELNLARAAGKHG-ILQMISTN-ASCSL----EEIVDARPPDQPLFFQLYVNKDRTKTE 134 (344)
T ss_pred cc-CCceeeChHHHhhhCCchHHHHHHHHHHHcC-CCEEecCc-ccCCH----HHHHHhcCCCCcEEEEEeecCCHHHHH
Confidence 45 67999999983 3222 3333345555 22333322 22222 222222233468899996 67889999
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeee----Ccc-------------------cccc---cCChHHHHHHHHHHhhccCc
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQN----GFF-------------------GAIL---MTKPLLVSDCIKAMRDSVEI 133 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~----~~~-------------------G~~l---~~~~~~~~eiv~~v~~~~~~ 133 (956)
+..++++.+||++|=|+.-.|..-.|. .++ +... ..++....+.++.+++.++.
T Consensus 135 ~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 214 (344)
T cd02922 135 ELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKL 214 (344)
T ss_pred HHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCC
Confidence 999999999999999988887432110 000 0010 12345667889999999999
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHH---hC-CCceEEE
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DF-PELEIII 209 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~---~~-~~ipVi~ 209 (956)
||.|| +... .+-++.+.++|+|+|.|++..+.. -... +.-+..+.++++ .+ .++|||+
T Consensus 215 PvivK---gv~~-------~~dA~~a~~~G~d~I~vsnhgG~~------~d~~--~~~~~~L~~i~~~~~~~~~~~~vi~ 276 (344)
T cd02922 215 PIVLK---GVQT-------VEDAVLAAEYGVDGIVLSNHGGRQ------LDTA--PAPIEVLLEIRKHCPEVFDKIEVYV 276 (344)
T ss_pred cEEEE---cCCC-------HHHHHHHHHcCCCEEEEECCCccc------CCCC--CCHHHHHHHHHHHHHHhCCCceEEE
Confidence 99999 3321 356888999999999997532110 0111 123444555544 22 2599999
Q ss_pred ecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 210 NGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 210 nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
.|||.+..|+.++|.. ||+|+|||+++..+.
T Consensus 277 ~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 277 DGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 9999999999999998 999999999988774
No 193
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.07 E-value=3.5e-09 Score=115.60 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=133.6
Q ss_pred CcceeeeeeecccccCCcch---HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 626 YKVIINEAIELVKSFGNIDE---KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 626 ~c~~~Ce~C~l~k~~~~~~~---~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.|+-.|.||..+..+..... ...++.|+++.+...+... .++-.+.=+-|++ -..+++.++.+.+++..++
T Consensus 60 ~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga-~r~c~~aagr~~~--~~~~~i~~~v~~Vk~~~~l--- 133 (335)
T COG0502 60 CCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGA-TRFCMGAAGRGPG--RDMEEVVEAIKAVKEELGL--- 133 (335)
T ss_pred CCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCC-ceEEEEEeccCCC--ccHHHHHHHHHHHHHhcCc---
Confidence 38999999998776532222 2235667777665543221 1111111111112 2334455555666544332
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHH
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLS 782 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e 782 (956)
++. ++...+++|.++.|+++|+.++.--++| +++..+.+--+|+.++-.+.++.++++|+.+..-.|+|+ |||.+
T Consensus 134 -e~c--~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~Gl-GEs~e 208 (335)
T COG0502 134 -EVC--ASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGL-GETVE 208 (335)
T ss_pred -HHh--hccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecC-CCCHH
Confidence 333 5677889999999999999999999999 999999999999999999999999999999999999998 67777
Q ss_pred HHHHHHHHHHccC-CCeEEEEeeeccCCcccccCC
Q psy2378 783 ELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFFKYP 816 (956)
Q Consensus 783 ~~~~tl~~~~~l~-~~~i~~y~l~~~pgT~l~~~~ 816 (956)
+-.+.+..+.++. |+.|-++.|.|.|||||.+..
T Consensus 209 Dri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~ 243 (335)
T COG0502 209 DRAELLLELANLPTPDSVPINFLNPIPGTPLENAK 243 (335)
T ss_pred HHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCC
Confidence 7677888888888 999999999999999998753
No 194
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.02 E-value=1.1e-08 Score=112.66 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=132.9
Q ss_pred ccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec-CCCHHHHHHHHH
Q psy2378 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKLAKSAK 83 (956)
Q Consensus 5 ~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~-g~~~~~~~~aA~ 83 (956)
+.++ +-|++.++|...++..+-.++++.|+.+.+.- | ..+... .+.+... ...+++.+. |.+++++.++.+
T Consensus 33 ~~~l-~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e~~~----~~~r~~~-~~~l~v~~~vg~~~~~~~~~~~ 104 (326)
T PRK05458 33 PRTF-KLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPEARI----PFIKDMH-EQGLIASISVGVKDDEYDFVDQ 104 (326)
T ss_pred CcEe-cCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHHHHH----HHHHhcc-ccccEEEEEecCCHHHHHHHHH
Confidence 3455 77999999988888888889999987544444 3 222111 1111111 112355554 456676666655
Q ss_pred HHHHcC--CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEE-eccCCCCCCcHHHHHHHHHHH
Q psy2378 84 IIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVK-HRIGIDDINSYDFVRDFVGTV 159 (956)
Q Consensus 84 ~~~~~G--~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vK-ir~g~~~~~~~~~~~~~a~~l 159 (956)
+.++| +|.|-|.+.-| +...+.++++.+|+.++ .||.+| +. +.+-++.|
T Consensus 105 -Lv~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~l 157 (326)
T PRK05458 105 -LAAEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVREL 157 (326)
T ss_pred -HHhcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHHH
Confidence 45554 59999975432 35678899999999985 888877 33 13567889
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHH--HHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN--FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~--~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
.++|+|++.|+.+.+.. -.+ ......+..+|. .+.++++.+ ++|||++|||.++.|+.++|+. ||+||+|+.++
T Consensus 158 ~~aGad~i~vg~~~G~~-~~t-~~~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 158 ENAGADATKVGIGPGKV-CIT-KIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred HHcCcCEEEECCCCCcc-ccc-ccccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhc
Confidence 99999999987432100 000 000111235666 488998887 7999999999999999999998 99999999888
Q ss_pred cCC
Q psy2378 237 KNP 239 (956)
Q Consensus 237 ~~P 239 (956)
+-.
T Consensus 235 ~~~ 237 (326)
T PRK05458 235 GHE 237 (326)
T ss_pred CCc
Confidence 533
No 195
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.01 E-value=4.6e-09 Score=113.71 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=124.3
Q ss_pred HHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeee
Q psy2378 29 FHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN 106 (956)
Q Consensus 29 ~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~ 106 (956)
.+..+|...+.++....+..-.+....++..-.....+-+|+.| .+.+++.++.. .|++.|-++
T Consensus 38 ~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viig---------- 103 (253)
T PRK02083 38 RYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR----AGADKVSIN---------- 103 (253)
T ss_pred HHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH----cCCCEEEEC----------
Confidence 44567754455666543322111111111111111223366655 35555555433 699998774
Q ss_pred CcccccccCChHHHHHHHHHHh-----hccC-------ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc--c
Q psy2378 107 GFFGAILMTKPLLVSDCIKAMR-----DSVE-------IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--R 172 (956)
Q Consensus 107 ~~~G~~l~~~~~~~~eiv~~v~-----~~~~-------~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~--r 172 (956)
+.++++|+++.++.+.+- -.++ .|++||+|.+++.... ...++++.+++.|++.+.+|. |
T Consensus 104 ----t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~g~~~ii~~~i~~ 177 (253)
T PRK02083 104 ----SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGL--DAVEWAKEVEELGAGEILLTSMDR 177 (253)
T ss_pred ----hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCC--CHHHHHHHHHHcCCCEEEEcCCcC
Confidence 556789999999999872 1223 4679999987765432 357889999999999999976 4
Q ss_pred ccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHH
Q psy2378 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
.+..+| .+|+.+.++++.+ ++|||++|||.|++|+.++++. ||+||+|+++...-.=+.++++
T Consensus 178 ~g~~~g-----------~d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~ 242 (253)
T PRK02083 178 DGTKNG-----------YDLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKA 242 (253)
T ss_pred CCCCCC-----------cCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHH
Confidence 322222 4899999999987 7999999999999999999874 9999999988765443444443
No 196
>PRK05927 hypothetical protein; Provisional
Probab=99.00 E-value=3.6e-09 Score=118.88 Aligned_cols=203 Identities=10% Similarity=0.055 Sum_probs=144.0
Q ss_pred CCCcceeeeeeecccccCCcch-HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcc-cCC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE-KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL-FKK 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~-~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~-~~~ 701 (956)
.-.|...|.||.+.+....... .-..+.+++.++...+ ..+.++.+.+|.......+++.++++.|++.++ +..
T Consensus 52 Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~----~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~ 127 (350)
T PRK05927 52 TNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS----AGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHP 127 (350)
T ss_pred chhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH----CCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcc
Confidence 5689999999988664332211 1224555555554333 235667777776555778888889999988753 321
Q ss_pred ----CceeE-EEeCCCCCCHHHHHHHHHcCCCeEEe-cCCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 702 ----NISIT-LEANPSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 702 ----~~eit-le~np~~it~e~L~~L~~~Gv~risi-GvQS~~d~~L~~~~R~-~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
..+++ +..+....++|.++.|+++|+.++.= |.|++++.+.+.+... .+.++-.+.++.+++.|+.++..+||
T Consensus 128 ~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~ 207 (350)
T PRK05927 128 HFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMF 207 (350)
T ss_pred cCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEE
Confidence 11222 12245677899999999999977765 8999999999988864 46799999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc----CCcccccCCCCCCCCHHHHHHHHHH
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDK 832 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~----pgT~l~~~~~~~~~~~~~~~~~~~~ 832 (956)
|+ |||.++..+.+..+.+++-+...+..+.|. +||||..... ..++.++..+....
T Consensus 208 G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~-~~~s~~e~Lr~iAv 267 (350)
T PRK05927 208 GH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVP-HQASPELYYRILAV 267 (350)
T ss_pred ee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCC-CCCCHHHHHHHHHH
Confidence 99 999999999999999988555555556655 6899865321 13455554443333
No 197
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.98 E-value=3.3e-08 Score=104.95 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=137.2
Q ss_pred eeeeeecccc--cCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCC--CCCCCHHHHHHHHHHHHHHcccCCCcee
Q psy2378 630 INEAIELVKS--FGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISI 705 (956)
Q Consensus 630 ~Ce~C~l~k~--~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggt--Ps~L~~~~l~~ll~~i~~~~~~~~~~ei 705 (956)
.|..|..+.. ........+++.+...+........ ...-.||-.|+. |.-.+++....+++.+.+. +...++
T Consensus 64 gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~-~~~vkIFTSGSFLD~~EVP~e~R~~Il~~is~~---~~v~~v 139 (358)
T COG1244 64 GCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFD-EFVVKIFTSGSFLDPEEVPREARRYILERISEN---DNVKEV 139 (358)
T ss_pred CcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCC-CceEEEEcccccCChhhCCHHHHHHHHHHHhhc---cceeEE
Confidence 4777765443 2233345666666666655432222 112345555532 2233345555677777664 334689
Q ss_pred EEEeCCCCCCHHHHHHHHHc--CC-CeEEecCCCCCHHHH-HHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 706 TLEANPSTFEIEKFHSYSII--GI-NRLSIGIQSFNNKYL-NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 706 tle~np~~it~e~L~~L~~~--Gv-~risiGvQS~~d~~L-~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
.+|.+|+-+++|.++.+.+. |. ..|.||+||.||++. ..+||+.+.+++.+|++.+|++|..+-+.+++=.|.=|+
T Consensus 140 vvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vktYlllKP~FlSE 219 (358)
T COG1244 140 VVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVKTYLLLKPPFLSE 219 (358)
T ss_pred EeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCceeEEEEecccccCh
Confidence 99999999999999999987 75 579999999999998 889999999999999999999999999999999987664
Q ss_pred ----HHHHHHHHHHHccCCCeEEEEeeeccCCcc---cccCCCCCCC
Q psy2378 782 ----SELMLDLNYAIQYSPPHLSLYSLTIEPNTY---FFKYPPLSMP 821 (956)
Q Consensus 782 ----e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~---l~~~~~~~~~ 821 (956)
++...|++ +.+-+.+.||+.+-++.+||- ||+.+.+.+|
T Consensus 220 ~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPP 265 (358)
T COG1244 220 KEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPP 265 (358)
T ss_pred HHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHHHHcCCCCCc
Confidence 44555666 666778999999999999997 4666777666
No 198
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.98 E-value=5.4e-09 Score=111.60 Aligned_cols=143 Identities=16% Similarity=0.306 Sum_probs=105.6
Q ss_pred CEEEEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHh-hccCccEEEEec-
Q psy2378 65 PIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-DSVEIDITVKHR- 140 (956)
Q Consensus 65 p~~vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir- 140 (956)
++-+|+.| .+.++.. .+.++|+|.|= -|+.++++|+.+.++++.+. +.+ .+++++|
T Consensus 72 ~~pi~~ggGI~~~ed~~----~~~~~Ga~~vv--------------lgs~~l~d~~~~~~~~~~~g~~~i--~~sid~~~ 131 (230)
T TIGR00007 72 GVPVQVGGGIRSLEDVE----KLLDLGVDRVI--------------IGTAAVENPDLVKELLKEYGPERI--VVSLDARG 131 (230)
T ss_pred CCCEEEeCCcCCHHHHH----HHHHcCCCEEE--------------EChHHhhCHHHHHHHHHHhCCCcE--EEEEEEEC
Confidence 34466644 3445443 34447999873 35667789999999999985 433 4455544
Q ss_pred -----cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC
Q psy2378 141 -----IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 215 (956)
Q Consensus 141 -----~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s 215 (956)
.||.+... .+..++++.+++.|++.+++|.++. .+.+. ..+|+.+.++++.+ ++||+++|||.+
T Consensus 132 ~~v~~~g~~~~~~-~~~~~~~~~~~~~g~~~ii~~~~~~--------~g~~~-g~~~~~i~~i~~~~-~ipvia~GGi~~ 200 (230)
T TIGR00007 132 GEVAVKGWLEKSE-VSLEELAKRLEELGLEGIIYTDISR--------DGTLS-GPNFELTKELVKAV-NVPVIASGGVSS 200 (230)
T ss_pred CEEEEcCCcccCC-CCHHHHHHHHHhCCCCEEEEEeecC--------CCCcC-CCCHHHHHHHHHhC-CCCEEEeCCCCC
Confidence 35654321 1357899999999999999998873 11112 35899999999986 799999999999
Q ss_pred HHHHHHHhhh-cCEEEEccccccC
Q psy2378 216 KKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 216 ~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
++|++++++. ||+||+|++++.+
T Consensus 201 ~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 201 IDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHHCCCCEEEEeHHHHcC
Confidence 9999998877 9999999999876
No 199
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.97 E-value=9.1e-09 Score=111.32 Aligned_cols=187 Identities=9% Similarity=0.116 Sum_probs=125.7
Q ss_pred HHHcCCCcEEEecccccccccCCchhcc-ccCCCCCCEEEEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeee
Q psy2378 30 HRQITRYSWLYTEMFTTQAILGNKKHCL-DFNAEEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN 106 (956)
Q Consensus 30 ~~~~g~~~l~~tem~~~~~l~~~~~~~~-~~~~~~~p~~vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~ 106 (956)
....|...+.++....+..--+....++ .+.. ...+-+|+.| .+++++.++. .+|++.|-+
T Consensus 39 ~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~-~~~~pv~~~GGi~s~~d~~~~~----~~Ga~~viv----------- 102 (254)
T TIGR00735 39 YDEEGADELVFLDITASSEGRTTMIDVVERTAE-TVFIPLTVGGGIKSIEDVDKLL----RAGADKVSI----------- 102 (254)
T ss_pred HHHcCCCEEEEEcCCcccccChhhHHHHHHHHH-hcCCCEEEECCCCCHHHHHHHH----HcCCCEEEE-----------
Confidence 3556755577777655432212111121 1111 1224466655 4566555443 369999876
Q ss_pred CcccccccCChHHHHHHHHHHh-hcc--Cc-----cE------EEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccc
Q psy2378 107 GFFGAILMTKPLLVSDCIKAMR-DSV--EI-----DI------TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172 (956)
Q Consensus 107 ~~~G~~l~~~~~~~~eiv~~v~-~~~--~~-----pv------~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r 172 (956)
|.+++.+|+++.++.+..- +++ .+ ++ -||+|.+++... .+..++++.++++|++.|.+|.+
T Consensus 103 ---gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~--~~~~~~~~~l~~~G~~~iivt~i 177 (254)
T TIGR00735 103 ---NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTG--LDAVEWAKEVEKLGAGEILLTSM 177 (254)
T ss_pred ---ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCC--CCHHHHHHHHHHcCCCEEEEeCc
Confidence 4567789999999988773 332 22 21 478887665433 24679999999999999999987
Q ss_pred ccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHH
Q psy2378 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
+. .| +.+..+|+++.++++.+ ++|||++|||.|++|+.++++. ||+||+|+.+...--=+.++++
T Consensus 178 ~~--~g-------~~~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~ 244 (254)
T TIGR00735 178 DK--DG-------TKSGYDLELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKE 244 (254)
T ss_pred Cc--cc-------CCCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHH
Confidence 63 22 22347999999999987 7999999999999999999985 9999999987654333444443
No 200
>KOG1436|consensus
Probab=98.96 E-value=1.4e-08 Score=106.59 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=148.2
Q ss_pred cccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCC-c-------------------------------
Q psy2378 6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-K------------------------------- 53 (956)
Q Consensus 6 ~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~-~------------------------------- 53 (956)
.+| +|||.+|.=.+-+....-.+.. .| .+++.+.-+....-.|+ +
T Consensus 91 ~~f-~NPiglAAGfdk~~eaidgL~~-~g-fG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~ 167 (398)
T KOG1436|consen 91 RKF-SNPIGLAAGFDKNAEAIDGLAN-SG-FGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLR 167 (398)
T ss_pred hhc-cCchhhhhccCcchHHHHHHHh-CC-CceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHH
Confidence 467 8899888766655555555544 44 56776554322222110 0
Q ss_pred -hhccccCCCCCCEEEEecCC--CHHHHHHHHHHHHHcC--CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHh
Q psy2378 54 -KHCLDFNAEEHPIAFQVGDN--EPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128 (956)
Q Consensus 54 -~~~~~~~~~~~p~~vQl~g~--~~~~~~~aA~~~~~~G--~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 128 (956)
.+.....+...+++|.+.-+ +.+...+-.+-++..| +|...||.+||.+.- -.-++.-..+.+.+..+.
T Consensus 168 ~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpG------lr~lq~k~~L~~ll~~v~ 241 (398)
T KOG1436|consen 168 AKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPG------LRSLQKKSDLRKLLTKVV 241 (398)
T ss_pred HHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcc------hhhhhhHHHHHHHHHHHH
Confidence 12333344556788888633 3444445555455544 799999999996532 111222222233333333
Q ss_pred hc-------cCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc-------------ccccCCCCCCCCCC
Q psy2378 129 DS-------VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------FLKKLNPKQNRKIP 188 (956)
Q Consensus 129 ~~-------~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~-------------~~~g~~~~~~~~~~ 188 (956)
.+ ...|+.+|+-+.... +++.+++..+.+.++|.+.+++.|. ...|++| .+..
T Consensus 242 ~a~~~~~~~~~~pvl~kiapDL~~----~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG---~plk 314 (398)
T KOG1436|consen 242 QARDKLPLGKKPPVLVKIAPDLSE----KELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSG---PPLK 314 (398)
T ss_pred HHHhccccCCCCceEEEeccchhH----HHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCC---Cccc
Confidence 22 145999999875443 3577888889999999999875442 1234444 3455
Q ss_pred cCcHHHHHHHHHhC-CCceEEEecCCCCHHHHHHHhhh-cCEEEEcccc-ccCCcchHHHHHhh
Q psy2378 189 ILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLNY 249 (956)
Q Consensus 189 ~~~~~~i~~v~~~~-~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~-l~~P~l~~~i~~~~ 249 (956)
+...+.++++.+.. ++||||++|||.|.+||-+.+.. |.+|.++.++ ++.|-++.+|++++
T Consensus 315 ~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El 378 (398)
T KOG1436|consen 315 PISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKREL 378 (398)
T ss_pred hhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHH
Confidence 66778888887765 46999999999999999999888 9999999996 67899999999765
No 201
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=98.94 E-value=1.3e-08 Score=114.49 Aligned_cols=172 Identities=16% Similarity=0.110 Sum_probs=126.4
Q ss_pred CCCCcceeeeeeecccc-cCCc---chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcc
Q psy2378 623 KIPYKVIINEAIELVKS-FGNI---DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 698 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~-~~~~---~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~ 698 (956)
-+..|+..|.||..... +... -....+..+++++. ...+..|.|.||.|+.- ..+..+++.+++.-.
T Consensus 20 iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~-------~~Gv~~I~~tGGEPllr--~dl~~li~~i~~~~~ 90 (329)
T PRK13361 20 VTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFT-------ELGVRKIRLTGGEPLVR--RGCDQLVARLGKLPG 90 (329)
T ss_pred ecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHH-------HCCCCEEEEECcCCCcc--ccHHHHHHHHHhCCC
Confidence 36789999999963211 0010 11122223333322 23467899999999764 346677777765411
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCC
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALP 777 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlP 777 (956)
...+++.+|...++ +.++.|+++|++++.++++|.+++..+.+.|..+.+++.++++.+++.++ .+.+..++ +|
T Consensus 91 ---l~~i~itTNG~ll~-~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~-~~ 165 (329)
T PRK13361 91 ---LEELSLTTNGSRLA-RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVI-LR 165 (329)
T ss_pred ---CceEEEEeChhHHH-HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEE-EC
Confidence 12677888876665 58899999999999999999999999999999999999999999999876 67766654 69
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeeeccCC
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPN 809 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pg 809 (956)
|++.+++.+.++++.+++++ +.+..++|..+
T Consensus 166 g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~ 196 (329)
T PRK13361 166 GQNDDEVLDLVEFCRERGLD-IAFIEEMPLGE 196 (329)
T ss_pred CCCHHHHHHHHHHHHhcCCe-EEEEecccCCC
Confidence 99999999999999999986 55666777654
No 202
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=98.86 E-value=2.5e-08 Score=112.51 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=128.1
Q ss_pred CCCCcceeeeeeeccccc--CCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 623 KIPYKVIINEAIELVKSF--GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~--~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
-+..|+..|.||...... ......-..+.+.+.++...+ ..+..|.|.||.|+.. + .+.++++.+++..
T Consensus 23 vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~----~gi~~I~~tGGEPll~-~-~l~~li~~i~~~~--- 93 (331)
T PRK00164 23 VTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA----LGVRKVRLTGGEPLLR-K-DLEDIIAALAALP--- 93 (331)
T ss_pred EcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH----CCCCEEEEECCCCcCc-c-CHHHHHHHHHhcC---
Confidence 367899999999654311 111111112333333332222 2467889999999764 3 4667777776541
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgq 779 (956)
....+++.+|-..+ .+.++.|+++|+.+|.++++|++++..+.+++..+.+++.++++.+++.++ .+.+.++ .+||.
T Consensus 94 ~~~~i~itTNG~ll-~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~v-v~~g~ 171 (331)
T PRK00164 94 GIRDLALTTNGYLL-ARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAV-LMKGV 171 (331)
T ss_pred CCceEEEEcCchhH-HHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEE-EECCC
Confidence 23467887776544 457889999999999999999999999999999999999999999999876 6777654 47999
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCCc
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNT 810 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT 810 (956)
+.+++.+.++++.++++ ++.+..|.|.+..
T Consensus 172 n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~ 201 (331)
T PRK00164 172 NDDEIPDLLEWAKDRGI-QLRFIELMPTGEG 201 (331)
T ss_pred CHHHHHHHHHHHHhCCC-eEEEEEeeECCCC
Confidence 99999999999999987 5777778777654
No 203
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.84 E-value=6.5e-08 Score=119.50 Aligned_cols=204 Identities=11% Similarity=0.059 Sum_probs=145.8
Q ss_pred CCCcceeeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
.-.|+..|.||.+.+..+... .....+.++++++...+ ..+.++.+.+|.-..++.+++.++++.|++.++
T Consensus 533 TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~----~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p---- 604 (843)
T PRK09234 533 TNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV----AGATEVCMQGGIHPELPGTGYADLVRAVKARVP---- 604 (843)
T ss_pred CCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH----CCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCC----
Confidence 568999999999876533222 22346667766665433 346677776665444677778888888888643
Q ss_pred ceeEEEe-C----------CCCCCHHHHHHHHHcCCCeEEe-cCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCeeE
Q psy2378 703 ISITLEA-N----------PSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGR-THDSKQAKYAIEIAKQYFNNFN 769 (956)
Q Consensus 703 ~eitle~-n----------p~~it~e~L~~L~~~Gv~risi-GvQS~~d~~L~~~~R-~~~~~~~~~ai~~l~~~~~~i~ 769 (956)
.+.+.+ . -...++|.++.|+++|+.++.- +-+-+++++.+.+.. ..+.++..++++.+++.|+.++
T Consensus 605 -~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~ 683 (843)
T PRK09234 605 -SMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSS 683 (843)
T ss_pred -CeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 223322 1 2234689999999999999876 457777777777765 5688899999999999999999
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeec----cCCcccccCC-CCCCCCHHHHHHHHHHHHHHH
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI----EPNTYFFKYP-PLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~----~pgT~l~~~~-~~~~~~~~~~~~~~~~~~~~l 837 (956)
..+|||+ +||.+++.+.+..+.+++.+...+..+.| .|+||++..+ ..+.++..+...+....+-+|
T Consensus 684 stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~L 755 (843)
T PRK09234 684 STMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIML 755 (843)
T ss_pred cceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999997 59999999999999999998777777777 6789886432 233456666555444443333
No 204
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.79 E-value=2.6e-07 Score=101.50 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=130.1
Q ss_pred ccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCHHHHHHHHHH
Q psy2378 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKI 84 (956)
Q Consensus 5 ~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~aA~~ 84 (956)
+.++ +-|++.+.|...++..+-..+++.|.. .+.-.| +.+.... .+-...+..-++.+.+ |-.++++.+++..
T Consensus 30 ~~~l-~~P~~inAM~t~in~~LA~~a~~~G~~-~i~hK~-~~E~~~s---fvrk~k~~~L~v~~Sv-G~t~e~~~r~~~l 102 (321)
T TIGR01306 30 KHKF-KLPVVPANMQTIIDEKLAEQLAENGYF-YIMHRF-DEESRIP---FIKDMQERGLFASISV-GVKACEYEFVTQL 102 (321)
T ss_pred CcEe-cCcEEeeccchhhhHHHHHHHHHcCCE-EEEecC-CHHHHHH---HHHhccccccEEEEEc-CCCHHHHHHHHHH
Confidence 3455 779999999989999999999999864 333333 3222211 1111222232333333 7788888888876
Q ss_pred HHHcC--CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHc
Q psy2378 85 IQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 162 (956)
Q Consensus 85 ~~~~G--~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~ 162 (956)
++. | .|.|=+-.. .| +.+.+.+.++.+|+.++.|+.++= +.. ..+.|+.|.++
T Consensus 103 v~a-~~~~d~i~~D~a--------hg-------~s~~~~~~i~~i~~~~p~~~vi~G--nV~-------t~e~a~~l~~a 157 (321)
T TIGR01306 103 AEE-ALTPEYITIDIA--------HG-------HSNSVINMIKHIKTHLPDSFVIAG--NVG-------TPEAVRELENA 157 (321)
T ss_pred Hhc-CCCCCEEEEeCc--------cC-------chHHHHHHHHHHHHhCCCCEEEEe--cCC-------CHHHHHHHHHc
Confidence 554 5 576655321 11 357789999999998866644442 221 24678999999
Q ss_pred CCCEEEEc---ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 163 GCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 163 G~~~i~vh---~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
|+|+|.|+ |++.+..-.++. ..+.+.+..+.++++.+ ++|||+.|||.+..|+.++|+. ||+||+||.+-+
T Consensus 158 Gad~I~V~~G~G~~~~tr~~~g~---g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag 232 (321)
T TIGR01306 158 GADATKVGIGPGKVCITKIKTGF---GTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG 232 (321)
T ss_pred CcCEEEECCCCCccccceeeecc---CCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC
Confidence 99999998 343211111111 11112345888999887 7999999999999999999998 999999987654
No 205
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=98.77 E-value=7e-08 Score=108.99 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=127.2
Q ss_pred CCCCcceeeeeeeccc-cc--CC---cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHH
Q psy2378 623 KIPYKVIINEAIELVK-SF--GN---IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 696 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k-~~--~~---~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~ 696 (956)
-+..|+..|.||.... .. .. .-....+..+++++. ...++.|.|.||.|...+ .+.++++.+++.
T Consensus 16 vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~-------~~gv~~V~ltGGEPll~~--~l~~li~~i~~~ 86 (334)
T TIGR02666 16 VTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFV-------GLGVRKVRLTGGEPLLRK--DLVELVARLAAL 86 (334)
T ss_pred ecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHH-------HCCCCEEEEECccccccC--CHHHHHHHHHhc
Confidence 3678999999997543 11 11 112222233333322 123678899999997643 466777777653
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCe-eEEEEee
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQYFNN-FNLDLIY 774 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R-~~~~~~~~~ai~~l~~~~~~-i~~dlI~ 774 (956)
.++ ..+++.+|...+ ++.++.|+++|+.+|.+.++|.+++..+.+.| ..+.+++.++++.+++.|+. +.+.++
T Consensus 87 ~gi---~~v~itTNG~ll-~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~v- 161 (334)
T TIGR02666 87 PGI---EDIALTTNGLLL-ARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTV- 161 (334)
T ss_pred CCC---CeEEEEeCchhH-HHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEE-
Confidence 121 267777777554 46789999999999999999999999999985 67999999999999998775 777654
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCccc
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYF 812 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l 812 (956)
-+||.+.+++.+.++++.+++++ +.+..++|..++..
T Consensus 162 v~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~ 198 (334)
T TIGR02666 162 VMRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNG 198 (334)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCcc
Confidence 45899999999999999999985 77778888776643
No 206
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=98.76 E-value=1.4e-08 Score=85.81 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=54.0
Q ss_pred chhhHHHHHHHHhhhhccCCChhhHHHHhCCCHH-HHHHHHHHHHHCCCeEEcCCEEeeCchhhc
Q psy2378 881 EKKCLIFEFMLNALRLKDGFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRY 944 (956)
Q Consensus 881 ~~~~~~~e~~~~~lr~~~gi~~~~~~~~~g~~~~-~~~~~l~~l~~~Gl~~~~~~~~~lT~~G~~ 944 (956)
+..+.+.|+++++||+.+|+|.+.|.++||.++. .+.+.++.++++||++.+++++++|++|++
T Consensus 2 s~~d~~~e~i~~~LR~~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~l 66 (66)
T PF06969_consen 2 SPEDRLREYIMLGLRCNEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDGGRLRLTEKGRL 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-SSEEEE-TTTGG
T ss_pred CHHHHHHHHHHHHHHhHCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeCCEEEECcccCc
Confidence 4567889999999999999999999999999875 557789999999999999999999999985
No 207
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=98.76 E-value=1.5e-07 Score=104.81 Aligned_cols=170 Identities=13% Similarity=0.089 Sum_probs=124.8
Q ss_pred CCCCcceeeeeeecccccCC---cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 623 KIPYKVIINEAIELVKSFGN---IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~---~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
-+..|+..|.||........ .-....+..+++++. ...++.|.|.||.|++-. .+..+++.+++. +
T Consensus 16 vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~-------~~gi~~I~~tGGEPll~~--~l~~iv~~l~~~-g- 84 (302)
T TIGR02668 16 VTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVAS-------EFGVRKVKITGGEPLLRK--DLIEIIRRIKDY-G- 84 (302)
T ss_pred EcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHH-------HcCCCEEEEECccccccc--CHHHHHHHHHhC-C-
Confidence 36799999999965432111 112222223333221 124677899999997643 355677777653 2
Q ss_pred CCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCe-eEEEEeecCCC
Q psy2378 700 KKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNN-FNLDLIYALPN 778 (956)
Q Consensus 700 ~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~-i~~dlI~GlPg 778 (956)
...+++.+|...+ ++.++.|+++|+.+|.+.+.|.+++..+.+.+..+.+++.++++.+++.|+. +.+.+++ +||
T Consensus 85 --~~~v~i~TNG~ll-~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~-~~g 160 (302)
T TIGR02668 85 --IKDVSMTTNGILL-EKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVV-LKG 160 (302)
T ss_pred --CceEEEEcCchHH-HHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEE-eCC
Confidence 1267777876544 5778899999999999999999999999999988999999999999998764 7766544 799
Q ss_pred CCHHHHHHHHHHHHccCCCeEEEEeeeccC
Q psy2378 779 QTLSELMLDLNYAIQYSPPHLSLYSLTIEP 808 (956)
Q Consensus 779 qT~e~~~~tl~~~~~l~~~~i~~y~l~~~p 808 (956)
++.+++.+.++++.+++++ +.+..+.|..
T Consensus 161 ~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~ 189 (302)
T TIGR02668 161 INDNEIPDMVEFAAEGGAI-LQLIELMPPG 189 (302)
T ss_pred CCHHHHHHHHHHHHhcCCE-EEEEEEeECC
Confidence 9999999999999999875 7777777654
No 208
>PTZ00413 lipoate synthase; Provisional
Probab=98.73 E-value=6.6e-07 Score=98.77 Aligned_cols=214 Identities=9% Similarity=-0.013 Sum_probs=137.2
Q ss_pred CCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCce
Q psy2378 625 PYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704 (956)
Q Consensus 625 P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~e 704 (956)
..|.-.|.||....... .. ....+.+.+-.+... ...++.+-+..++=.-++......+.+.++..-.. .+.
T Consensus 157 ~~CTr~C~FCaqstg~~-p~-~lD~eEp~~vA~av~----~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~--~p~ 228 (398)
T PTZ00413 157 DHCTRGCRFCSVKTSRK-PP-PLDPNEPEKVAKAVA----EMGVDYIVMTMVDRDDLPDGGASHVARCVELIKES--NPE 228 (398)
T ss_pred CCCCCCCCCCCCCCCCC-CC-CCCHHHHHHHHHHHH----HcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHcc--CCC
Confidence 58999999998765321 11 111222222222111 11233333433332223444455555555443211 236
Q ss_pred eEEEeCCCCC--CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhc---CCeeEEEEeecCCC
Q psy2378 705 ITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQY---FNNFNLDLIYALPN 778 (956)
Q Consensus 705 itle~np~~i--t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R-~~~~~~~~~ai~~l~~~---~~~i~~dlI~GlPg 778 (956)
+.+++....+ +++.++.|+++|+.++.-.+|| .++....++. .++.++..+.++.+++. ++.+...+|+| +|
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVG-LG 306 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLG-LG 306 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEec-CC
Confidence 7788875544 8899999999999999999999 9999999995 69999999999999986 67788899999 89
Q ss_pred CCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCC
Q psy2378 779 QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGY 855 (956)
Q Consensus 779 qT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~ 855 (956)
||.+++.+++..+.+++++.+.+-+|...-..-+ ...+ ...++ .|+...+.-.+.||.+-.-.=+.|..|
T Consensus 307 ET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~-~V~~--yv~P~----~F~~~~~~a~~~Gf~~v~sgPlVRSSY 376 (398)
T PTZ00413 307 ETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRL-KVSR--YAHPK----EFEMWEEEAMKMGFLYCASGPLVRSSY 376 (398)
T ss_pred CCHHHHHHHHHHHHHcCCcEEeeccccCCCcccC-Ccee--ccCHH----HHHHHHHHHHHcCCceEEecCccccch
Confidence 9999999999999999999999876643211111 0011 12222 244444556678888643333444433
No 209
>PLN02535 glycolate oxidase
Probab=98.73 E-value=2.9e-07 Score=103.08 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=135.0
Q ss_pred ccCCCceEEccCcCc------CCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecC-CCHHHHH
Q psy2378 7 KYNKRKISIAPMMNL------TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD-NEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~------td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g-~~~~~~~ 79 (956)
.| .-|+.+||+... .+...-+-+.+.| .-.+.+ +.+...+ +++... .+.+...||.- .|.+...
T Consensus 70 ~~-~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lS-t~s~~sl----Eeva~~--~~~~~wfQlY~~~dr~~~~ 140 (364)
T PLN02535 70 TI-SAPIMIAPTAMHKLAHPEGEIATARAAAACN-TIMVLS-FMASCTV----EEVASS--CNAVRFLQLYVYKRRDIAA 140 (364)
T ss_pred cc-cccceechHHHhcccCcchHHHHHHHHHHcC-CCeEec-CcccCCH----HHHHhc--CCCCeEEEEeccCCHHHHH
Confidence 55 679999999642 2334444455565 222222 2233333 222211 24589999985 6788888
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceee----eCcc--------c------------ccc------cCChHHHHHHHHHHhh
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF--------G------------AIL------MTKPLLVSDCIKAMRD 129 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~----~~~~--------G------------~~l------~~~~~~~~eiv~~v~~ 129 (956)
+..++++++||.+|=+..-+|..-.| +.++ . ..+ .-++.+--+-++.+++
T Consensus 141 ~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~ 220 (364)
T PLN02535 141 QLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRS 220 (364)
T ss_pred HHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHh
Confidence 89999999999998886666543221 0000 0 000 0133333466788999
Q ss_pred ccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEE
Q psy2378 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEII 208 (956)
Q Consensus 130 ~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi 208 (956)
.++.||.||-=.. .+-++.+.++|+|+|.|++.-+...+ ..+.-...+.++++.+ .++|||
T Consensus 221 ~~~~PvivKgV~~----------~~dA~~a~~~GvD~I~vsn~GGr~~d--------~~~~t~~~L~ev~~av~~~ipVi 282 (364)
T PLN02535 221 ITNLPILIKGVLT----------REDAIKAVEVGVAGIIVSNHGARQLD--------YSPATISVLEEVVQAVGGRVPVL 282 (364)
T ss_pred ccCCCEEEecCCC----------HHHHHHHHhcCCCEEEEeCCCcCCCC--------CChHHHHHHHHHHHHHhcCCCEE
Confidence 8999999993221 24478899999999999753211111 1123467777887765 269999
Q ss_pred EecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 209 INGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 209 ~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
+.|||.+..|+.++|.. ||+|++||+++..+.
T Consensus 283 ~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 283 LDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred eeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 99999999999999998 999999999887655
No 210
>KOG2535|consensus
Probab=98.73 E-value=2.2e-07 Score=98.35 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=128.0
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHc-----------------ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEec
Q psy2378 671 IFIGGGTPSLISDTGLDYLLKNIKKLL-----------------LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIG 733 (956)
Q Consensus 671 i~fgggtPs~L~~~~l~~ll~~i~~~~-----------------~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiG 733 (956)
+-+.|||+..|+.+.-..++..+...+ .......+|+|.+|+......+..|-..||+|+.||
T Consensus 174 ~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTRlEiG 253 (554)
T KOG2535|consen 174 FIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTRLEIG 253 (554)
T ss_pred EEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCcccchhhhHHHHHhcCCceEEec
Confidence 345678988998877666665554432 112334799999999888888999999999999999
Q ss_pred CCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHHHHHHHH-HHHH--ccCCCeEEEEeeeccCCc
Q psy2378 734 IQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDL-NYAI--QYSPPHLSLYSLTIEPNT 810 (956)
Q Consensus 734 vQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e~~~~tl-~~~~--~l~~~~i~~y~l~~~pgT 810 (956)
|||.-+++-+..||+|+...+-+.+.++++.|..+..++|-.||+-..|--.+.. ++.. .+.+|.+.+|+-.+..||
T Consensus 254 VQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGT 333 (554)
T KOG2535|consen 254 VQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGT 333 (554)
T ss_pred cchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHHHHHhcCcCcCCCcceecceEEEecc
Confidence 9999999999999999999999999999999999999999999987654322222 2222 357899999999999999
Q ss_pred ccccC---CCCCCCCHHHHHHHHHHHHHH
Q psy2378 811 YFFKY---PPLSMPSNDENAVMQDKITSL 836 (956)
Q Consensus 811 ~l~~~---~~~~~~~~~~~~~~~~~~~~~ 836 (956)
-||+. +.++..+.+...++...+..+
T Consensus 334 GLyELWKtgrYk~Y~p~~LvdlvArILal 362 (554)
T KOG2535|consen 334 GLYELWKTGRYKSYSPSALVDLVARILAL 362 (554)
T ss_pred cHHHHHhcCCcccCCHHHHHHHHHHHHhh
Confidence 98764 556666666655555544433
No 211
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.72 E-value=6.5e-07 Score=102.93 Aligned_cols=167 Identities=11% Similarity=0.104 Sum_probs=125.6
Q ss_pred CCCcceeeeeeecccccC---CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 624 IPYKVIINEAIELVKSFG---NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~---~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
+..|+..|.||....... ..-...-+..+++++.. ..+..|.|.||.|++. ++ +.++++.+++.
T Consensus 23 T~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~-------~g~~~v~~~GGEPll~-~~-~~~il~~~~~~---- 89 (378)
T PRK05301 23 TYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA-------LGALQLHFSGGEPLLR-KD-LEELVAHAREL---- 89 (378)
T ss_pred cCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH-------cCCcEEEEECCccCCc-hh-HHHHHHHHHHc----
Confidence 568999999996532211 11122223344444432 2356789999999764 33 66777777653
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhcCCeeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQYFNNFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~-~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgq 779 (956)
...+++.+|...++++.++.|++.|+..|++.+++.+++..+.+.+. .+.+++.++++.+++.++.+.+.+ -++.+
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~--vv~~~ 166 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA--VIHRH 166 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE--EeecC
Confidence 23556778888899999999999999999999999999999888665 488999999999999887766544 45889
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeec
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTI 806 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~ 806 (956)
+.+++.+.++++.+++++++.+..+.+
T Consensus 167 N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 167 NIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 999999999999999999998765543
No 212
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.70 E-value=4.6e-08 Score=105.35 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++++.++++|++.|+++.++. .+ +.++.+++.++++++.+ ++||+++|||.|.++++++++. ||+|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~--~~-------~~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v 97 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITA--SS-------EGRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKV 97 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCc--cc-------ccCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceE
Confidence 467999999999999999998873 11 22356999999999988 7999999999999999999988 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
++||+++.||+++.++.+.+
T Consensus 98 ~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 98 SINSAAVENPELIREIAKRF 117 (243)
T ss_pred EECchhhhChHHHHHHHHHc
Confidence 99999999999999998754
No 213
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.69 E-value=6.3e-07 Score=101.37 Aligned_cols=202 Identities=11% Similarity=0.141 Sum_probs=125.9
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc---CCchhc-------------------c----------
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNKKHC-------------------L---------- 57 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~---~~~~~~-------------------~---------- 57 (956)
+-||+.|||.++|+..+---..+.||.+.+-.. .+.+.+. ...++. .
T Consensus 42 ~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~-~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~ 120 (404)
T PRK06843 42 NIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKN-MSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSD 120 (404)
T ss_pred CCCEecCCCCCCCCHHHHHHHHHCCCEEEecCC-CCHHHHHHHHHHHHhhcCCCceeecccccccchhheeccccchHHH
Confidence 569999999999999888877888877665432 2333322 000000 0
Q ss_pred -------------cc-CCCCCC-EEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHH
Q psy2378 58 -------------DF-NAEEHP-IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122 (956)
Q Consensus 58 -------------~~-~~~~~p-~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~e 122 (956)
.. ...++. +++-+ |.+++.+ +-++.+.++|+|.|=|-.+-+ +.+.+.+
T Consensus 121 ~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~~~-~~v~~lv~aGvDvI~iD~a~g---------------~~~~~~~ 183 (404)
T PRK06843 121 AYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTI-ERVEELVKAHVDILVIDSAHG---------------HSTRIIE 183 (404)
T ss_pred HHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHHHH-HHHHHHHhcCCCEEEEECCCC---------------CChhHHH
Confidence 00 001111 22223 4456644 444456668999988854322 3567889
Q ss_pred HHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHH---HHH
Q psy2378 123 CIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV---YNL 198 (956)
Q Consensus 123 iv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i---~~v 198 (956)
+++.+|+.+ +.+|.++-=. +.+-++.+.++|+|+|.+.-..... .+.+.....+..++..+ +++
T Consensus 184 ~v~~ik~~~p~~~vi~g~V~----------T~e~a~~l~~aGaD~I~vG~g~Gs~--c~tr~~~g~g~p~ltai~~v~~~ 251 (404)
T PRK06843 184 LVKKIKTKYPNLDLIAGNIV----------TKEAALDLISVGADCLKVGIGPGSI--CTTRIVAGVGVPQITAICDVYEV 251 (404)
T ss_pred HHHHHHhhCCCCcEEEEecC----------CHHHHHHHHHcCCCEEEECCCCCcC--CcceeecCCCCChHHHHHHHHHH
Confidence 999999987 6777776222 2466888999999999873111000 00010011122355544 444
Q ss_pred HHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcch
Q psy2378 199 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLM 242 (956)
Q Consensus 199 ~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~ 242 (956)
.+.. ++|||+-|||.++.|+.++|+. ||+||+|+.+.+-..-+
T Consensus 252 ~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Esp 295 (404)
T PRK06843 252 CKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESP 295 (404)
T ss_pred Hhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCC
Confidence 4444 6999999999999999999998 99999999988754433
No 214
>KOG1799|consensus
Probab=98.69 E-value=5.5e-09 Score=110.57 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHH
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 152 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~ 152 (956)
.+...|.+.+...+++|.|..|+|++||... ..+|+|.++-+.|..+.||...|+..+.+|+.-|+.++.++.
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm-~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~------ 287 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGM-CERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDK------ 287 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCC-ccccccceeccChhhhHHHhhhhhhccccccccccCCCcccc------
Confidence 5667899999999999999999999999875 456799999999999999999999999999999999987764
Q ss_pred HHHHHHHHHcCCCEEEE---------------------cccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 153 RDFVGTVSSAGCRTFIV---------------------HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~v---------------------h~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
.++++.....|+..|+- .+|+ .+.|++++. +.|..+..+..|++.....|+.+.|
T Consensus 288 revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~s-T~GG~S~~A---vRPIAl~~V~~IA~~m~~F~l~~~G 363 (471)
T KOG1799|consen 288 REVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYS-TPGGYSYKA---VRPIALAKVMNIAKMMKEFSLSGIG 363 (471)
T ss_pred cccchhcCcccccchhhHhHHHHHhcccccccCCCccccccc-CCCCccccc---cchHHHHHHHHHHHHhhcCcccccc
Confidence 36777777777776642 1222 245555543 3355666666666655567899999
Q ss_pred CCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 212 GIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 212 gI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
||.+.+|+.+++.. +.-|.+..|.+
T Consensus 364 GvEt~~~~~~Fil~Gs~~vQVCt~V~ 389 (471)
T KOG1799|consen 364 GVETGYDAAEFILLGSNTVQVCTGVM 389 (471)
T ss_pred CcccccchhhHhhcCCcHhhhhhHHH
Confidence 99999999999875 55555555543
No 215
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=98.69 E-value=8.2e-07 Score=95.14 Aligned_cols=177 Identities=11% Similarity=0.039 Sum_probs=119.3
Q ss_pred CCCcceeeeeeecccccCC-cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFGN-IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~-~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||........ .......+.+++++......+. .....|.|.||.|+. .++.+.++++.+++. +
T Consensus 22 ~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~-~~~~~I~~~GGEPll-~~~~~~~li~~~~~~-g---- 94 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFK-ASGGGVTFSGGEPLL-QPEFLSELFKACKEL-G---- 94 (235)
T ss_pred ECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHh-cCCCeEEEeCccccc-CHHHHHHHHHHHHHC-C----
Confidence 5689999999975432211 1112235666666655433221 112468888999875 566677888888763 2
Q ss_pred ceeEEEeCCCCC--CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCC--
Q psy2378 703 ISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN-- 778 (956)
Q Consensus 703 ~eitle~np~~i--t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPg-- 778 (956)
..+++.+|-... ++...+++. .+..+.++++|.+++..+.+.+. +.+.+.++++.+++.++.+.+-+++ +||
T Consensus 95 ~~~~i~TNG~~~~~~~~~~~ll~--~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv-~~~~~ 170 (235)
T TIGR02493 95 IHTCLDTSGFLGGCTEAADELLE--YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVL-VPGYT 170 (235)
T ss_pred CCEEEEcCCCCCccHHHHHHHHH--hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEee-eCCcC
Confidence 346666766322 443444444 35689999999999998887655 7789999999999988777776666 476
Q ss_pred CCHHHHHHHHHHHHccC-CCeEEEEeeeccCCccc
Q psy2378 779 QTLSELMLDLNYAIQYS-PPHLSLYSLTIEPNTYF 812 (956)
Q Consensus 779 qT~e~~~~tl~~~~~l~-~~~i~~y~l~~~pgT~l 812 (956)
++.+++.+.++++.+++ +..+.+.++.+. |+..
T Consensus 171 ~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~-g~~~ 204 (235)
T TIGR02493 171 DSEEDIEALAEFVKTLPNVERVEVLPYHQL-GVYK 204 (235)
T ss_pred CCHHHHHHHHHHHHhCCCCceEEecCCCcc-cHHH
Confidence 57899999999999998 466666655543 4443
No 216
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.69 E-value=5.1e-07 Score=90.89 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=128.3
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC
Q psy2378 667 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 746 (956)
Q Consensus 667 ~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~ 746 (956)
..+.+-+.||.-+-.... +.++.+.+++. .....+.+.++..-++++.++.+++.+++-+|+-+=+-|+.+-+..+
T Consensus 55 Gy~g~llSGGm~srg~VP-l~kf~d~lK~l---ke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~ 130 (275)
T COG1856 55 GYEGCLLSGGMDSRGKVP-LWKFKDELKAL---KERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYK 130 (275)
T ss_pred CceeEEEeCCcCCCCCcc-HHHHHHHHHHH---HHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHc
Confidence 456666666654433322 33444444332 12234667788888889999999999999999999887777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHH
Q psy2378 747 RTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDEN 826 (956)
Q Consensus 747 R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~ 826 (956)
-+.+.+++.+.++.+++.++++--++++|+-+-..+.=.+.++.+.+..||-+-+-.+.|.|||.+... +.|+.++.
T Consensus 131 l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~---~pp~~eE~ 207 (275)
T COG1856 131 LPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS---PPPPVEEA 207 (275)
T ss_pred CCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCC---CCcCHHHH
Confidence 788999999999999999999999999999888877777899999999999999999999999987544 46777787
Q ss_pred HHHHHHHHHHHH
Q psy2378 827 AVMQDKITSLLK 838 (956)
Q Consensus 827 ~~~~~~~~~~l~ 838 (956)
.....++++.+.
T Consensus 208 i~v~~~AR~~f~ 219 (275)
T COG1856 208 IKVVKYARKKFP 219 (275)
T ss_pred HHHHHHHHHhCC
Confidence 777777666543
No 217
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.67 E-value=4.5e-07 Score=101.90 Aligned_cols=191 Identities=14% Similarity=0.204 Sum_probs=114.1
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCHHHHHH---------
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAK--------- 80 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~--------- 80 (956)
+.||+.|||.++|+..+---+-..||.+.+=+-..+.+.+-..-.++-..+ ++|+.+.++...++.-..
T Consensus 11 ~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t--~~pfgvnl~~~~~~~~~~~~~~~~~~~ 88 (330)
T PF03060_consen 11 KYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALT--DKPFGVNLFLPPPDPADEEDAWPKELG 88 (330)
T ss_dssp SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH---SS-EEEEEETTSTTHHHH-HHHHHHTH
T ss_pred CcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhc--cccccccccccCcccchhhhhhhhhhH
Confidence 449999999999999998877778877666544444443321111122222 239999998554322221
Q ss_pred --HHHHHHHc--------------CCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCC
Q psy2378 81 --SAKIIQKW--------------GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID 144 (956)
Q Consensus 81 --aA~~~~~~--------------G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 144 (956)
......+. +.+.|-..+|.|. .++++.+++. ++.+......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~-------------------~~~i~~l~~~-gi~v~~~v~s--- 145 (330)
T PF03060_consen 89 NAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP-------------------PEVIERLHAA-GIKVIPQVTS--- 145 (330)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC--------------------HHHHHHHHHT-T-EEEEEESS---
T ss_pred HHHHHHHHHhCcccccccccccccceEEEEeecccch-------------------HHHHHHHHHc-CCccccccCC---
Confidence 11222233 3447777777762 2456666653 7788776542
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhh
Q psy2378 145 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN 224 (956)
Q Consensus 145 ~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~ 224 (956)
.+-|+.+++.|+|.|.+-|... .|+.+. .. ..-+.++.++++.+ ++|||+.|||.|.+++..+|.
T Consensus 146 --------~~~A~~a~~~G~D~iv~qG~eA--GGH~g~---~~-~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~ 210 (330)
T PF03060_consen 146 --------VREARKAAKAGADAIVAQGPEA--GGHRGF---EV-GSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALA 210 (330)
T ss_dssp --------HHHHHHHHHTT-SEEEEE-TTS--SEE------SS-G-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHH
T ss_pred --------HHHHHHhhhcCCCEEEEecccc--CCCCCc---cc-cceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHH
Confidence 4568899999999999986542 333331 00 12477888999988 799999999999999999998
Q ss_pred h-cCEEEEccccccCCc
Q psy2378 225 Y-IDGVMLGREAYKNPF 240 (956)
Q Consensus 225 ~-ad~VmiGR~~l~~P~ 240 (956)
. ||||++|..++.-+.
T Consensus 211 lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 211 LGADGVQMGTRFLATEE 227 (330)
T ss_dssp CT-SEEEESHHHHTSTT
T ss_pred cCCCEeecCCeEEeccc
Confidence 8 999999997765443
No 218
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.65 E-value=4.1e-07 Score=96.39 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
++-|++++++|+-+|--=---|..- +...|-+-+++|+.+. +|++++++||.-|+|.|. ..=|+.
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~--r~~ggv~R~~~p~~I~----~I~~~V~iPVig~~kigh---------~~Ea~~ 84 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADI--RASGGVARMSDPKMIK----EIMDAVSIPVMAKVRIGH---------FVEAQI 84 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhh--HhcCCeeecCCHHHHH----HHHHhCCCCEEEEeeccH---------HHHHHH
Confidence 3568899999987776543445432 3445788899998755 555567999999999974 123677
Q ss_pred HHHcCCCEEEEccccc----------------------------------------ccccCCCC----------------
Q psy2378 159 VSSAGCRTFIVHARNA----------------------------------------FLKKLNPK---------------- 182 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~----------------------------------------~~~g~~~~---------------- 182 (956)
|+++|+|.|.-+.|.. ...|++|.
T Consensus 85 L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~ 164 (287)
T TIGR00343 85 LEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIR 164 (287)
T ss_pred HHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHH
Confidence 8888888886332210 01222331
Q ss_pred ------CC------CCCCcCcHHHHHHHHHhCCCceEE--EecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 183 ------QN------RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 183 ------~~------~~~~~~~~~~i~~v~~~~~~ipVi--~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
.. ......+++.++++++.. ++||+ +.|||.||+++..+++. ||+|++|+++..
T Consensus 165 ~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 165 QIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred HHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 00 001236899999999987 79998 99999999999999998 999999999985
No 219
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.65 E-value=4.2e-07 Score=96.31 Aligned_cols=146 Identities=22% Similarity=0.223 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
++-|++++++|+-+|-.----|... +...|-+-+++|+. +++|++.+++||.-+++.++ ..=++.
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~--~~~~~v~R~~~~~~----I~~Ik~~V~iPVIGi~K~~~---------~~Ea~~ 82 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADI--RAAGGVARMADPKM----IKEIMDAVSIPVMAKVRIGH---------FVEAQI 82 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhh--hhcCCeeecCCHHH----HHHHHHhCCCCeEEeeehhH---------HHHHHH
Confidence 3567889999988877644445443 33346777888876 56667778999999998864 122455
Q ss_pred HHHcCCCEEEEccccc----------------------------------------ccccCCCC----------------
Q psy2378 159 VSSAGCRTFIVHARNA----------------------------------------FLKKLNPK---------------- 182 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~----------------------------------------~~~g~~~~---------------- 182 (956)
|+++|+|.|.-+.|.. ...|++|.
T Consensus 83 L~eaGvDiIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~ 162 (283)
T cd04727 83 LEALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIR 162 (283)
T ss_pred HHHcCCCEEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 6666666665332210 12233332
Q ss_pred --------CC---CCCCcCcHHHHHHHHHhCCCceEE--EecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 183 --------QN---RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 183 --------~~---~~~~~~~~~~i~~v~~~~~~ipVi--~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
.. ......+|+.++++++.. ++||+ +.|||.+++++.++++. ||+|++|++++.-++
T Consensus 163 ~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d 233 (283)
T cd04727 163 KLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN 233 (283)
T ss_pred HHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC
Confidence 10 112346999999999987 69997 99999999999999998 999999999986333
No 220
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.65 E-value=8.3e-07 Score=99.25 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=134.1
Q ss_pred ccCCCceEEccCcC------cCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCCHHHHHH
Q psy2378 7 KYNKRKISIAPMMN------LTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAK 80 (956)
Q Consensus 7 ~~~~~~i~lAPM~~------~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~~~~~~~ 80 (956)
+| .-|+.+||++. -.+...-+-|.+.| .-++.+-+ +...+ +++.... +.|.-.||.-.+.+....
T Consensus 62 ~~-~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~-ss~si----Eeva~a~--~~~~wfQLY~~~r~~~~~ 132 (361)
T cd04736 62 VW-SAPLVIAPTGLNGAFWPNGDLALARAAAKAG-IPFVLSTA-SNMSI----EDVARQA--DGDLWFQLYVVHRELAEL 132 (361)
T ss_pred cc-cccccccHHHHHhccCCcHHHHHHHHHHHcC-CcEEeeCC-CCCCH----HHHHhhc--CCCeEEEEEecCHHHHHH
Confidence 45 67999999954 23445555566666 33433332 22222 2222111 357999999888777777
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeee----Ccc---------------------------------------ccc-----
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQN----GFF---------------------------------------GAI----- 112 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~----~~~---------------------------------------G~~----- 112 (956)
..++++.+||++|=+..=+|+.-.|. .++ +..
T Consensus 133 ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (361)
T cd04736 133 LVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQA 212 (361)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHH
Confidence 88999999999998855444322110 000 000
Q ss_pred --c--cCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCC
Q psy2378 113 --L--MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188 (956)
Q Consensus 113 --l--~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~ 188 (956)
. .-++.+.-+.++.+++.++.|+.+| |.-. .+-++.+.++|+|+|.|++..+ . +....
T Consensus 213 ~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~~-------~eda~~a~~~G~d~I~VSnhGG-------r-qld~~ 274 (361)
T cd04736 213 ALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIVT-------AEDAKRCIELGADGVILSNHGG-------R-QLDDA 274 (361)
T ss_pred HHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCCC-------HHHHHHHHHCCcCEEEECCCCc-------C-CCcCC
Confidence 0 1134445568899999999999999 3321 3557889999999999864321 0 11112
Q ss_pred cCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 189 ~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+...+.+.++++.+ ++|||+.|||.+..|+.++|.- ||+||+||++|
T Consensus 275 ~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 275 IAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred ccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 34678888998887 6999999999999999999998 99999999765
No 221
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.64 E-value=6.5e-07 Score=100.31 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=117.8
Q ss_pred ccCCCCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEE
Q psy2378 58 DFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDIT 136 (956)
Q Consensus 58 ~~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~ 136 (956)
....+..|+..|+++.+|+++.+.++.+.+.||+.|.||+|. +++...++++++|++++ .++.
T Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~ 181 (316)
T cd03319 118 GGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLR 181 (316)
T ss_pred CCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEE
Confidence 334566788899999999999999999999999999999763 34556788999998875 7788
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH
Q psy2378 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 216 (956)
Q Consensus 137 vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~ 216 (956)
++.+.+|+. +++.++++.|++.|+.+|. ++. ++.+|+..+++++.. ++||++++.+.++
T Consensus 182 vD~n~~~~~----~~A~~~~~~l~~~~l~~iE---------------eP~-~~~d~~~~~~L~~~~-~ipIa~~E~~~~~ 240 (316)
T cd03319 182 VDANQGWTP----EEAVELLRELAELGVELIE---------------QPV-PAGDDDGLAYLRDKS-PLPIMADESCFSA 240 (316)
T ss_pred EeCCCCcCH----HHHHHHHHHHHhcCCCEEE---------------CCC-CCCCHHHHHHHHhcC-CCCEEEeCCCCCH
Confidence 888888875 4588999999999998882 111 246899999999987 7999999999999
Q ss_pred HHHHHHhhh--cCEEEEccccccCCc
Q psy2378 217 KEIDLHLNY--IDGVMLGREAYKNPF 240 (956)
Q Consensus 217 ~da~~~l~~--ad~VmiGR~~l~~P~ 240 (956)
+++.++++. +|.|.+--.-++...
T Consensus 241 ~~~~~~~~~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 241 ADAARLAGGGAYDGINIKLMKTGGLT 266 (316)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCHH
Confidence 999999986 999987544444433
No 222
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.64 E-value=7.8e-08 Score=104.11 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++++.+++.|++.|++|.+++.. . ..+.+|+.++++++.+ ++||+++|||.|.+++++++.. ||+|+
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~--------~-~~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASS--------E-GRDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc--------c-cCcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence 6789999999999999999987411 1 1147999999999988 7999999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|++++.||+++.++.+.+
T Consensus 102 igt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 102 INSAAVANPELISEAADRF 120 (253)
T ss_pred EChhHhhCcHHHHHHHHHc
Confidence 9999999999999998754
No 223
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.64 E-value=1.8e-06 Score=98.56 Aligned_cols=168 Identities=10% Similarity=0.087 Sum_probs=124.9
Q ss_pred CCCCCcceeeeeeecccccC---CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcc
Q psy2378 622 YKIPYKVIINEAIELVKSFG---NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~---~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~ 698 (956)
.-+..|+..|.||....... ..-....+..+++++... .+..+.|.||.|++. ++ +.++++.+++.
T Consensus 12 eiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~-------g~~~v~~~GGEPll~-~~-~~~ii~~~~~~-- 80 (358)
T TIGR02109 12 ELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAEL-------GVLQLHFSGGEPLAR-PD-LVELVAHARRL-- 80 (358)
T ss_pred eeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhc-------CCcEEEEeCcccccc-cc-HHHHHHHHHHc--
Confidence 33568999999996532211 111223344455554322 356789999999864 43 66777777653
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhcCCeeEEEEeecCC
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQYFNNFNLDLIYALP 777 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~-~~~~~~~~ai~~l~~~~~~i~~dlI~GlP 777 (956)
...+.+.+|-..++++.++.|++.|+.+|++++++.+++..+.+++. .+.+.+.++++.+++.++.+.+ .+-++
T Consensus 81 ---g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v--~~vv~ 155 (358)
T TIGR02109 81 ---GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTL--NFVIH 155 (358)
T ss_pred ---CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEE--EEEec
Confidence 23567778888889999999999999999999999999999888653 4678899999999998876654 44457
Q ss_pred CCCHHHHHHHHHHHHccCCCeEEEEeee
Q psy2378 778 NQTLSELMLDLNYAIQYSPPHLSLYSLT 805 (956)
Q Consensus 778 gqT~e~~~~tl~~~~~l~~~~i~~y~l~ 805 (956)
.++.+++.+.++++.+++++++.+..+.
T Consensus 156 ~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 156 RHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 8999999999999999999999876543
No 224
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=98.62 E-value=5.2e-07 Score=102.81 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=125.5
Q ss_pred CCCCcceeeeeeecccccCCcc--hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 623 KIPYKVIINEAIELVKSFGNID--EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~--~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
-+..|+..|.||.......... ..-..+.+.+.+.... ...++.|.|.||.|+.- + .+..+++.+++..+
T Consensus 64 vT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~----~~Gv~~I~~tGGEPllr-~-dl~eli~~l~~~~g-- 135 (373)
T PLN02951 64 LTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFV----AAGVDKIRLTGGEPTLR-K-DIEDICLQLSSLKG-- 135 (373)
T ss_pred EcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHH----HCCCCEEEEECCCCcch-h-hHHHHHHHHHhcCC--
Confidence 3579999999996432111000 0011233333222211 23467789999999764 3 46777777765412
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC-eeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN-NFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~-~i~~dlI~GlPgq 779 (956)
...+++.+|-..++ +.++.|+++|+++|.+.++|.+++..+.+.|....+++.++++.+++.+. .+.+.+ +-++|.
T Consensus 136 -i~~i~itTNG~lL~-~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~-vv~~g~ 212 (373)
T PLN02951 136 -LKTLAMTTNGITLS-RKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNC-VVMRGF 212 (373)
T ss_pred -CceEEEeeCcchHH-HHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEE-EecCCC
Confidence 22467667665554 55788999999999999999999999999888888999999999999864 455443 356789
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCCccc
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYF 812 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l 812 (956)
+.+++.+.++++.+.++ .+.+..++|..+++.
T Consensus 213 N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~ 244 (373)
T PLN02951 213 NDDEICDFVELTRDKPI-NVRFIEFMPFDGNVW 244 (373)
T ss_pred CHHHHHHHHHHHHhCCC-eEEEEEcccCCCCcc
Confidence 99999999999999885 588888999988854
No 225
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.60 E-value=4.6e-07 Score=94.15 Aligned_cols=153 Identities=17% Similarity=0.370 Sum_probs=114.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec--
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR-- 140 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir-- 140 (956)
..++-+|++|.=-+ . +.++.+.++|++-|=+ |+.-.++|+++.++++..-.++-+.+.+|..
T Consensus 73 ~~~~~vQvGGGIRs-~-~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~v 136 (241)
T COG0106 73 ATDVPVQVGGGIRS-L-EDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDRIVVALDARDGKV 136 (241)
T ss_pred hCCCCEEeeCCcCC-H-HHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcEEEEEEccCCcc
Confidence 45677999875322 2 2233455588877765 5666899999999999987655444554431
Q ss_pred --cCCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH
Q psy2378 141 --IGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 216 (956)
Q Consensus 141 --~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~ 216 (956)
-||.+.... ++.++++.+++.|+..+.+| .|.+.++| .|++.+.++.+.+ ++|||++|||.|.
T Consensus 137 av~GW~e~s~~-~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G-----------~n~~l~~~l~~~~-~ipviaSGGv~s~ 203 (241)
T COG0106 137 AVSGWQEDSGV-ELEELAKRLEEVGLAHILYTDISRDGTLSG-----------PNVDLVKELAEAV-DIPVIASGGVSSL 203 (241)
T ss_pred ccccccccccC-CHHHHHHHHHhcCCCeEEEEecccccccCC-----------CCHHHHHHHHHHh-CcCEEEecCcCCH
Confidence 167765432 47899999999999999988 45443443 5999999999998 8999999999999
Q ss_pred HHHHHHhhh--cCEEEEccccccCCcchHH
Q psy2378 217 KEIDLHLNY--IDGVMLGREAYKNPFLMSN 244 (956)
Q Consensus 217 ~da~~~l~~--ad~VmiGR~~l~~P~l~~~ 244 (956)
+|.+.+.+. +++|.+||+++..-.=+.+
T Consensus 204 ~Di~~l~~~~G~~GvIvG~ALy~g~~~l~e 233 (241)
T COG0106 204 DDIKALKELSGVEGVIVGRALYEGKFTLEE 233 (241)
T ss_pred HHHHHHHhcCCCcEEEEehHHhcCCCCHHH
Confidence 999988875 9999999999876554433
No 226
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.60 E-value=4.1e-07 Score=102.52 Aligned_cols=200 Identities=16% Similarity=0.159 Sum_probs=127.3
Q ss_pred ccCCCceEEccCcCcC------CHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec-CCCHHHHH
Q psy2378 7 KYNKRKISIAPMMNLT------DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~t------d~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~-g~~~~~~~ 79 (956)
+| .-|+++|||.+.+ +...-+-|.+.| . ..+....+...+ +...... +.|..+||. -.+.+...
T Consensus 56 ~~-s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G-i-~~~lss~s~~~~----e~ia~~~--~~~~~~Qly~~~d~~~~~ 126 (356)
T PF01070_consen 56 KL-SMPFFIAPMGGGGLAHPDGERALARAAAKAG-I-PMMLSSQSSASL----EEIAAAS--GGPLWFQLYPPRDRELTR 126 (356)
T ss_dssp EE-SSSEEEEEESTGGGTSTTHHHHHHHHHHHHT-S-EEEEETTCSSCH----HHHHHHC--TSEEEEEEEGBSSHHHHH
T ss_pred cC-CCCeEEcchhhhhhhccchHHHHHHHHhccC-c-ceeccCCccCCH----HHHHhhc--cCCeEEEEEEecCHHHHH
Confidence 55 7799999998632 234444566776 3 333333333332 2222222 278999996 46888888
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeee----Cc-------------------------------------------cccc
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQN----GF-------------------------------------------FGAI 112 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~----~~-------------------------------------------~G~~ 112 (956)
+..++++++||++|=++.=+|..-.+. .+ +...
T Consensus 127 ~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (356)
T PF01070_consen 127 DLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGS 206 (356)
T ss_dssp HHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHC
T ss_pred HHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHH
Confidence 899999999999988854322110000 00 0000
Q ss_pred ccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc--cccccccCCCCCCCCCCcC
Q psy2378 113 LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPIL 190 (956)
Q Consensus 113 l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~--r~~~~~g~~~~~~~~~~~~ 190 (956)
. -++.+.-+-++.+++.++.||.||==+. .+-|+.+.+.|+++|.|++ ++. .-.++.
T Consensus 207 ~-~~~~~~w~~i~~~~~~~~~pvivKgv~~----------~~da~~~~~~G~~~i~vs~hGGr~----------~d~~~~ 265 (356)
T PF01070_consen 207 Q-FDPSLTWDDIEWIRKQWKLPVIVKGVLS----------PEDAKRAVDAGVDGIDVSNHGGRQ----------LDWGPP 265 (356)
T ss_dssp H-B-TT-SHHHHHHHHHHCSSEEEEEEE-S----------HHHHHHHHHTT-SEEEEESGTGTS----------STTS-B
T ss_pred h-cCCCCCHHHHHHHhcccCCceEEEeccc----------HHHHHHHHhcCCCEEEecCCCccc----------Cccccc
Confidence 1 1344444668999999999999994421 3457889999999999964 332 111234
Q ss_pred cHHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 191 KYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 191 ~~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
-.+.+.++++.++ ++|||+.|||.+..|+.+.+.- ||+|++||+++
T Consensus 266 ~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 266 TIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence 5677778887664 6999999999999999999998 99999999654
No 227
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.59 E-value=1.5e-06 Score=90.37 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=115.8
Q ss_pred CCCEEEEecCCC----HHHHHHHHHHHHHcCCCEEEec--CCCCcceeeeCcccccccCChHHHHHHHHHHhhcc--Ccc
Q psy2378 63 EHPIAFQVGDNE----PKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EID 134 (956)
Q Consensus 63 ~~p~~vQl~g~~----~~~~~~aA~~~~~~G~d~IeiN--~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~p 134 (956)
..|+++++.+.+ .++..+.++.+.++|+|+|.+. .+++. ..+++.+.+.++++++.+ ++|
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~p 115 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLK------------EGDWEEVLEEIAAVVEAADGGLP 115 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHh------------CCCHHHHHHHHHHHHHHhcCCce
Confidence 678999999988 8999999999999999999984 32221 125788999999999885 899
Q ss_pred EEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC-CceEEEecCC
Q psy2378 135 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGI 213 (956)
Q Consensus 135 v~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ipVi~nGgI 213 (956)
+.++..++.. .+.+...++++.+++.|++.|..+.... ....+++.+.++++..+ ++||+..||+
T Consensus 116 v~iy~~p~~~--~~~~~~~~~~~~~~~~g~~~iK~~~~~~------------~~~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 116 LKVILETRGL--KTADEIAKAARIAAEAGADFIKTSTGFG------------GGGATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEeCCCCC------------CCCCCHHHHHHHHHhcccCCcEEEECCC
Confidence 9999988765 2234567778888899999998875421 12358888999988764 5899999999
Q ss_pred CCHHHHHHHhhh-cCEEEEc
Q psy2378 214 KTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 214 ~s~~da~~~l~~-ad~VmiG 232 (956)
.+++.+.+.+.. |+++++|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 999999999988 9999875
No 228
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.58 E-value=9.9e-07 Score=96.78 Aligned_cols=190 Identities=12% Similarity=0.138 Sum_probs=122.1
Q ss_pred CceEEccCcCcCC-HHHHHHHHHcCCCcEEEecccccccccCCchhccccCC--CCCCEEEEecCCCH-HHHHHHHHHHH
Q psy2378 11 RKISIAPMMNLTD-RHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA--EEHPIAFQVGDNEP-KKLAKSAKIIQ 86 (956)
Q Consensus 11 ~~i~lAPM~~~td-~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~--~~~p~~vQl~g~~~-~~~~~aA~~~~ 86 (956)
-||+.+||.++++ ..|---.-..||.+++=....+.+.+- ..+-.... .++|+.|.|.+..+ +.+.+....+.
T Consensus 3 yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~---~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~ 79 (320)
T cd04743 3 YPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVK---ALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVR 79 (320)
T ss_pred CCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHH---HHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHH
Confidence 3999999999998 687776677776654433333333321 11111111 36899999965322 22444555667
Q ss_pred HcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCE
Q psy2378 87 KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRT 166 (956)
Q Consensus 87 ~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~ 166 (956)
+.+.+.|-+.+|.| .. ++.+++ .++.|...... .+.+++++++|+|.
T Consensus 80 e~~v~~V~~~~G~P-----------------~~----~~~lk~-~Gi~v~~~v~s-----------~~~A~~a~~~GaD~ 126 (320)
T cd04743 80 AIKPTFALIAGGRP-----------------DQ----ARALEA-IGISTYLHVPS-----------PGLLKQFLENGARK 126 (320)
T ss_pred hcCCcEEEEcCCCh-----------------HH----HHHHHH-CCCEEEEEeCC-----------HHHHHHHHHcCCCE
Confidence 78899998877666 11 245554 37887765432 46689999999999
Q ss_pred EEEcccccccccCCCCCCCCCCcCcHHHH-HHHHHhC-----CCceEEEecCCCCHHHHHHHhhh-c--------CEEEE
Q psy2378 167 FIVHARNAFLKKLNPKQNRKIPILKYNFV-YNLKKDF-----PELEIIINGGIKTKKEIDLHLNY-I--------DGVML 231 (956)
Q Consensus 167 i~vh~r~~~~~g~~~~~~~~~~~~~~~~i-~~v~~~~-----~~ipVi~nGgI~s~~da~~~l~~-a--------d~Vmi 231 (956)
|.+.|... .|+.|.... -.-|..+ ..+.+.. .++|||+.|||.|...+..++.- | +||.+
T Consensus 127 vVaqG~EA--GGH~G~~~t---~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~m 201 (320)
T cd04743 127 FIFEGREC--GGHVGPRSS---FVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLM 201 (320)
T ss_pred EEEecCcC--cCCCCCCCc---hhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEE
Confidence 99988753 344332111 1233333 2232111 26999999999999998888776 6 89999
Q ss_pred ccccccCCcc
Q psy2378 232 GREAYKNPFL 241 (956)
Q Consensus 232 GR~~l~~P~l 241 (956)
|..++.-+..
T Consensus 202 GTrFl~t~Es 211 (320)
T cd04743 202 GTAYLFTEEA 211 (320)
T ss_pred ccHHhcchhh
Confidence 9998876655
No 229
>PLN02979 glycolate oxidase
Probab=98.58 E-value=1.4e-06 Score=96.71 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=132.9
Q ss_pred cccCCCceEEccCcCc----CC--HHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec-CCCHHHH
Q psy2378 6 SKYNKRKISIAPMMNL----TD--RHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKL 78 (956)
Q Consensus 6 ~~~~~~~i~lAPM~~~----td--~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~-g~~~~~~ 78 (956)
..| .-|+.+||++.. .| ...-+-|.+.| .-.+.+ ..+..++ +.+-.. .+.+...|+. -.|.+..
T Consensus 66 ~~~-~~P~~iAP~g~~~l~hpdgE~a~ARAA~~ag-i~~~lS-t~ss~sl----EeIa~a--~~~~~wfQLY~~~Dr~~~ 136 (366)
T PLN02979 66 FKI-SMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLS-SWATSSV----EEVAST--GPGIRFFQLYVYKNRNVV 136 (366)
T ss_pred ccc-CccceecHHHHHhhCCCChHHHHHHHHHHcC-CCeeec-cCcCCCH----HHHHhc--cCCCeEEEEeecCCHHHH
Confidence 355 679999999642 23 34444556666 222222 2333322 222221 2357999998 5788888
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceee----eCccc-----------------------ccc------cCChHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFG-----------------------AIL------MTKPLLVSDCIK 125 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~----~~~~G-----------------------~~l------~~~~~~~~eiv~ 125 (956)
.+..++++++||.+|=+..-+|..-.| +.++- +.. .-++.+.=+-++
T Consensus 137 ~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~ 216 (366)
T PLN02979 137 EQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQ 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHH
Confidence 888999999999999886666554111 11100 000 012223335688
Q ss_pred HHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CC
Q psy2378 126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PE 204 (956)
Q Consensus 126 ~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ 204 (956)
.+|+.++.||.||-=. . .+-|+.+.++|+|+|.|++.-+ .. ....|.-.+.+.++++.+ .+
T Consensus 217 wlr~~~~~PvivKgV~---~-------~~dA~~a~~~Gvd~I~VsnhGG-------rq-ld~~p~t~~~L~ei~~~~~~~ 278 (366)
T PLN02979 217 WLQTITKLPILVKGVL---T-------GEDARIAIQAGAAGIIVSNHGA-------RQ-LDYVPATISALEEVVKATQGR 278 (366)
T ss_pred HHHhccCCCEEeecCC---C-------HHHHHHHHhcCCCEEEECCCCc-------CC-CCCchhHHHHHHHHHHHhCCC
Confidence 8999999999999432 1 3557889999999999975432 11 111133466777777664 35
Q ss_pred ceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 205 LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 205 ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+|||+.|||.+..|+.++|.- ||+|++||+++
T Consensus 279 ~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 279 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999999999999999999998 99999999665
No 230
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.58 E-value=4.5e-07 Score=97.45 Aligned_cols=154 Identities=12% Similarity=0.161 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHH-----HHHHHHhhccCccEE--EEeccCCCC
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS-----DCIKAMRDSVEIDIT--VKHRIGIDD 145 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~-----eiv~~v~~~~~~pv~--vKir~g~~~ 145 (956)
.+++++.+.++.+.++ +|+||||+.||-+. . -|..+.+.++.+. ++++++|+.+++|+. +|+.....
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~--a--dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~- 88 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK--Y--DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD- 88 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC--C--CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh-
Confidence 4789999999999888 99999999888653 2 2666677777777 899999988899973 55554211
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEccc-----------------------------cc---------ccc-----cCCCC
Q psy2378 146 INSYDFVRDFVGTVSSAGCRTFIVHAR-----------------------------NA---------FLK-----KLNPK 182 (956)
Q Consensus 146 ~~~~~~~~~~a~~l~~~G~~~i~vh~r-----------------------------~~---------~~~-----g~~~~ 182 (956)
...++++.+.++|++.+++|.- |. ... +..|.
T Consensus 89 -----~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~ 163 (244)
T PRK13125 89 -----SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA 163 (244)
T ss_pred -----CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC
Confidence 1346677788888888887721 00 000 11111
Q ss_pred CCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 183 ~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
......+.-.+.++++++..++.||+.-|||.+++++.++++. ||+|.+|++++.
T Consensus 164 ~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 164 TGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1111111123577888887656899999999999999999888 999999998764
No 231
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.55 E-value=2.1e-06 Score=96.65 Aligned_cols=203 Identities=11% Similarity=0.125 Sum_probs=129.9
Q ss_pred ccCCCceEEccCcCc------CCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec-CCCHHHHH
Q psy2378 7 KYNKRKISIAPMMNL------TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~------td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~-g~~~~~~~ 79 (956)
.| .-|+++||++.. .+...-+-|.+.| .-++.+. .+..++ +++-. . .+.|.-.||. -.|.+...
T Consensus 68 ~~-~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g-~~~~lSt-~ss~sl----Eeia~-~-~~~~~wfQlY~~~Dr~~~~ 138 (381)
T PRK11197 68 KL-SMPVALAPVGLTGMYARRGEVQAARAADAKG-IPFTLST-VSVCPI----EEVAP-A-IKRPMWFQLYVLRDRGFMR 138 (381)
T ss_pred cc-ccchhhChHHHhhccCCchHHHHHHHHHHcC-CCEEeeC-CCcCCH----HHHHh-c-cCCCeEEEEEecCCHHHHH
Confidence 45 679999999642 3445555556666 3344333 222222 22221 1 2458999996 56888888
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceee----eCcccc---------cccCC-----------------------------h
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFGA---------ILMTK-----------------------------P 117 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~----~~~~G~---------~l~~~-----------------------------~ 117 (956)
+..++++.+||.+|=+..-+|..-.| +.++-. ..+.+ .
T Consensus 139 ~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~ 218 (381)
T PRK11197 139 NALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE 218 (381)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchh
Confidence 89999999999999987666643222 000000 00000 1
Q ss_pred HH------------HHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCC
Q psy2378 118 LL------------VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185 (956)
Q Consensus 118 ~~------------~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~ 185 (956)
.+ -=+=++.+++.++.||.+|-=. ..+-|+.+.++|+|+|.|++..+ . +.
T Consensus 219 ~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~----------s~~dA~~a~~~Gvd~I~Vs~hGG-------r-~~ 280 (381)
T PRK11197 219 DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL----------DPEDARDAVRFGADGIVVSNHGG-------R-QL 280 (381)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecC----------CHHHHHHHHhCCCCEEEECCCCC-------C-CC
Confidence 11 1122788899999999999332 13557889999999999964221 1 11
Q ss_pred CCCcCcHHHHHHHHHhC-CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 186 KIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 186 ~~~~~~~~~i~~v~~~~-~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
...+.-.+.+.++++.+ .++|||+.|||.+..|+.+.|.- ||+||+||+++
T Consensus 281 d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l 333 (381)
T PRK11197 281 DGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFV 333 (381)
T ss_pred CCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHH
Confidence 11123456677776655 36999999999999999999998 99999999765
No 232
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.55 E-value=2.5e-06 Score=97.81 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCC-CCCCcCcH
Q psy2378 115 TKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKY 192 (956)
Q Consensus 115 ~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~-~~~~~~~~ 192 (956)
.+++-+.++++.+|+.++ +||.+|+-.+.+ ..++++.++..|+|+|+|.+..+. .+..+... ...+..-.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~-------~~~~a~~~~~~g~D~I~VsG~~Gg-tg~~~~~~~~~~g~pt~ 267 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHG-------EGDIAAGVAAAGADFITIDGAEGG-TGAAPLTFIDHVGLPTE 267 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCCC-------HHHHHHHHHHcCCCEEEEeCCCCC-CCCCcccccccCCccHH
Confidence 356778999999999998 999999987531 247788888888999999876321 11111000 00111112
Q ss_pred HHHHHHHHhC------CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCC
Q psy2378 193 NFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP 239 (956)
Q Consensus 193 ~~i~~v~~~~------~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P 239 (956)
..+.++.+.+ .++|||+.|||.++.|+.+++.. ||+|.+||+++.--
T Consensus 268 ~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 268 LGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 2333333322 25999999999999999999998 99999999988543
No 233
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=98.54 E-value=5.4e-06 Score=96.36 Aligned_cols=204 Identities=15% Similarity=0.113 Sum_probs=134.5
Q ss_pred CCCCCcceeeeeeecccc------cCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKS------FGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIK 694 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~------~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~ 694 (956)
.-.|.|+..|.||.-... .+.....-..+.+++.+......+. .+..+.|.| |-|..-. +.....+..++
T Consensus 29 ~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~-e~~~~~l~~~~ 105 (442)
T TIGR01290 29 AVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANI-GKTFQTLELVA 105 (442)
T ss_pred ecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCc-cccHHHHHHHH
Confidence 447999999999974211 0101111123455555554433221 245577778 9987643 33445566666
Q ss_pred HHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHh-------CCCCC--------HHHHHHHHH
Q psy2378 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL-------GRTHD--------SKQAKYAIE 759 (956)
Q Consensus 695 ~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~-------~R~~~--------~~~~~~ai~ 759 (956)
+.+ +...+++.+|-.. .++.++.|.+.|++.|.+-+-++|++..+.+ +|.++ .+...+.++
T Consensus 106 ~~~---~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~ 181 (442)
T TIGR01290 106 RQL---PDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLE 181 (442)
T ss_pred Hhc---CCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHH
Confidence 542 2346777777643 3788999999999999999999999999876 33332 234567788
Q ss_pred HHHhcCCeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccC--CcccccCCCCCCCCHHHHHHHHHHHH
Q psy2378 760 IAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP--NTYFFKYPPLSMPSNDENAVMQDKIT 834 (956)
Q Consensus 760 ~l~~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~p--gT~l~~~~~~~~~~~~~~~~~~~~~~ 834 (956)
.+.+.+..+.+-.++ +||.+.+++.+..+++.++++..+.+.+|.+.| |+++. +...+.|+.++..++.+...
T Consensus 182 ~l~~~G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~-~~~~~~ps~e~l~~~~~~~~ 256 (442)
T TIGR01290 182 KLTERGILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYG-LNGQREPDPDELAALRDRLE 256 (442)
T ss_pred HHHhCCCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccC-cCCCCCcCHHHHHHHHHHHH
Confidence 888877765554333 478888999999999999999888899998887 87753 33345577666544444433
No 234
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.53 E-value=8.8e-07 Score=93.82 Aligned_cols=127 Identities=14% Similarity=0.216 Sum_probs=93.4
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChH--HHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL--LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~--~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
-++.+.++|+|.|-++... ..+|+ .+.++++.+++..++|+.+... + .+-+..
T Consensus 84 ~~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~-------t----~~ea~~ 138 (219)
T cd04729 84 EVDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS-------T----LEEALN 138 (219)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC-------C----HHHHHH
Confidence 4467778999999997532 11232 6778888888765688877532 1 234577
Q ss_pred HHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccc
Q psy2378 159 VSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 159 l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~ 235 (956)
+.++|+|++.+. +++. . .......+|+.++++++.+ ++||+++|||.+++++.++++. ||+|++|+++
T Consensus 139 a~~~G~d~i~~~~~g~t~-------~-~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 139 AAKLGFDIIGTTLSGYTE-------E-TAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred HHHcCCCEEEccCccccc-------c-ccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 889999999763 4331 1 1112235889999999988 7999999999999999999998 9999999997
Q ss_pred ccCCcc
Q psy2378 236 YKNPFL 241 (956)
Q Consensus 236 l~~P~l 241 (956)
+...+.
T Consensus 210 ~~~~~~ 215 (219)
T cd04729 210 TRPEHI 215 (219)
T ss_pred hChHhH
Confidence 665543
No 235
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.50 E-value=3.8e-06 Score=94.82 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=131.7
Q ss_pred cccCCCceEEccCcCc------CCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecC-CCHHHH
Q psy2378 6 SKYNKRKISIAPMMNL------TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD-NEPKKL 78 (956)
Q Consensus 6 ~~~~~~~i~lAPM~~~------td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g-~~~~~~ 78 (956)
.+| .-|+.+||++.. .+...-+-|.+.| .-.+.+-+ +..++ +++... ..+.+...||.- .|.+..
T Consensus 82 ~~~-~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~g-i~~~lSt~-ss~sl----EeIa~~-~~~~~~wfQlY~~~dr~~~ 153 (383)
T cd03332 82 RTL-AAPLLLAPIGVQELFHPDAELATARAAAELG-VPYILSTA-SSSSI----EDVAAA-AGDAPRWFQLYWPKDDDLT 153 (383)
T ss_pred ccc-cccceechHHHHHhcCCcHHHHHHHHHHHcC-CCeeecCC-CCCCH----HHHHhh-cCCCCcEEEeeCCCCHHHH
Confidence 355 679999999752 2344444556666 22333322 22222 222221 124589999975 578888
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeee----Ccc---------------------------------------ccccc-
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQN----GFF---------------------------------------GAILM- 114 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~----~~~---------------------------------------G~~l~- 114 (956)
.+..++++++||.+|=+..-.|..-.|. .++ ++...
T Consensus 154 ~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
T cd03332 154 ESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVS 233 (383)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHH
Confidence 8889999999999988853332211110 000 00000
Q ss_pred --CChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcH
Q psy2378 115 --TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 192 (956)
Q Consensus 115 --~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~ 192 (956)
-++.+--+-++.+++.++.||.+| |.-. .+-|+.+.++|+|+|.|++..+ .. ....+.-.
T Consensus 234 ~~~~~~~tW~~i~~lr~~~~~pvivK---gV~~-------~~dA~~a~~~G~d~I~vsnhGG-------r~-~d~~~~t~ 295 (383)
T cd03332 234 VFSGPSLTWEDLAFLREWTDLPIVLK---GILH-------PDDARRAVEAGVDGVVVSNHGG-------RQ-VDGSIAAL 295 (383)
T ss_pred hcCCCCCCHHHHHHHHHhcCCCEEEe---cCCC-------HHHHHHHHHCCCCEEEEcCCCC-------cC-CCCCcCHH
Confidence 123333366888888899999999 3321 3557888999999999974321 11 11123456
Q ss_pred HHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 193 NFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 193 ~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
..+.++++.+. ++|||+.|||.+..|+.+.|.. ||+|++||+++
T Consensus 296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 77888887764 5999999999999999999998 99999999877
No 236
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.49 E-value=1.8e-06 Score=107.03 Aligned_cols=195 Identities=10% Similarity=0.041 Sum_probs=133.1
Q ss_pred CCCcceeeeeeecccccCCcc-hHHHHHHHHHHHhhhcccccccceeEEEe-cCCCCCCC---------------CHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNID-EKKYLEALLIDVELSLPIILNRKIHTIFI-GGGTPSLI---------------SDTGL 686 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~f-gggtPs~L---------------~~~~l 686 (956)
.-.|...|.||.+.+..+... ..-..+.|++.++...+. .+.++.| +|-.|..- ..+++
T Consensus 78 Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~----G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~ 153 (843)
T PRK09234 78 TRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAA----GCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYV 153 (843)
T ss_pred CCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHC----CCCEEEEecCCCCccccccccccccccccccHHHHH
Confidence 568999999999876544221 112356666666554332 2344444 44556531 12455
Q ss_pred HHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCC------CHHHHHHHHHH
Q psy2378 687 DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH------DSKQAKYAIEI 760 (956)
Q Consensus 687 ~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~------~~~~~~~ai~~ 760 (956)
..+++.+++..++ -..+|+..+|.+.++.|+++|+. ..+-+++.++...+..+-.| ..++-.+.++.
T Consensus 154 ~~~~~~ik~~~gl------~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~ 226 (843)
T PRK09234 154 RAMAIRVLEETGL------LPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLED 226 (843)
T ss_pred HHHHHHHHHhcCC------CceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHH
Confidence 5566666554332 22466788999999999999986 45666777776654333223 56677889999
Q ss_pred HHhcCCeeEEEEeecCCCCCHHHHHHHHHHHHcc-----CCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHH
Q psy2378 761 AKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY-----SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKI 833 (956)
Q Consensus 761 l~~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l-----~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~ 833 (956)
+++.|+.++.-+|||+ |||.++..+.+..+.++ ++..+-+.+|.|.||||+... +.++.++..+....+
T Consensus 227 A~~lGi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~---~~~s~~e~Lr~iAva 300 (843)
T PRK09234 227 AGRLSVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGV---PDAGLEELLATIAVA 300 (843)
T ss_pred HHHcCCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCC---CCCCHHHHHHHHHHH
Confidence 9999999999999999 99999999999999988 577788889999999999654 234555544444433
No 237
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.47 E-value=2.2e-06 Score=90.95 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=92.1
Q ss_pred HHHHHHcCCCEEEecCCCCcceeeeCcccccccCCh--HHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHH
Q psy2378 82 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP--LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 159 (956)
Q Consensus 82 A~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~--~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l 159 (956)
++.+.++|+|.|-+.. |. ..+| +.+.++++.+++..++|+.+... + .+-++.+
T Consensus 81 v~~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-------t----~ee~~~a 135 (221)
T PRK01130 81 VDALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS-------T----LEEGLAA 135 (221)
T ss_pred HHHHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC-------C----HHHHHHH
Confidence 4667789999888743 21 1122 56678888888744677765432 1 2335789
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
.++|+|++.++.+.. .+ ... ...+.+++.++++++.+ ++||++.|||.+++++.++++. ||+|++|++++..
T Consensus 136 ~~~G~d~i~~~~~g~--t~---~~~-~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 136 QKLGFDFIGTTLSGY--TE---ETK-KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred HHcCCCEEEcCCcee--ec---CCC-CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 999999998753321 11 110 12345789999999988 7999999999999999999988 9999999986654
Q ss_pred CcchHHH
Q psy2378 239 PFLMSNF 245 (956)
Q Consensus 239 P~l~~~i 245 (956)
++..+++
T Consensus 209 ~~~~~~~ 215 (221)
T PRK01130 209 EEITKWF 215 (221)
T ss_pred HHHHHHH
Confidence 4333333
No 238
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.45 E-value=5.5e-07 Score=96.38 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++|+.+++.|++.++|+..+....+ .+.+++.++++++.+ ++||+++|||.++++++++++. ||.|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~---------~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGG---------EPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccC---------CCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3678999999999999999977642211 246899999999988 7999999999999999999988 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
++|+.++.||+++.++.+.+
T Consensus 100 vigs~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 100 IIGTAAVKNPELVKELLKEY 119 (234)
T ss_pred EECchHHhChHHHHHHHHHc
Confidence 99999999999999998754
No 239
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.44 E-value=2.1e-06 Score=95.35 Aligned_cols=198 Identities=19% Similarity=0.227 Sum_probs=124.0
Q ss_pred ccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEeccccccccc--CCchhc---cccCCC-CCCEEEEecCCCHHHH
Q psy2378 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHC---LDFNAE-EHPIAFQVGDNEPKKL 78 (956)
Q Consensus 5 ~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~--~~~~~~---~~~~~~-~~p~~vQl~g~~~~~~ 78 (956)
+..+ +-|++-|||-++|+..+-.-..+.||.+.+.-+|...+..- .+-++. ....+. .-.+.+-+. ..++.+
T Consensus 33 ~~~l-~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg-~~~~~~ 110 (352)
T PF00478_consen 33 NITL-KIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVG-TRDDDF 110 (352)
T ss_dssp SEEE-SSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEE-SSTCHH
T ss_pred CEee-cCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEec-CCHHHH
Confidence 4445 77999999999999999986677888877777765443321 111111 111222 233455554 344445
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVG 157 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~~~a~ 157 (956)
..+.. +.++|+|.|=|... .+ +.+.+.+.++.+|+..+ +||.+-= .- +.+-++
T Consensus 111 er~~~-L~~agvD~ivID~a--------~g-------~s~~~~~~ik~ik~~~~~~~viaGN---V~-------T~e~a~ 164 (352)
T PF00478_consen 111 ERAEA-LVEAGVDVIVIDSA--------HG-------HSEHVIDMIKKIKKKFPDVPVIAGN---VV-------TYEGAK 164 (352)
T ss_dssp HHHHH-HHHTT-SEEEEE-S--------ST-------TSHHHHHHHHHHHHHSTTSEEEEEE---E--------SHHHHH
T ss_pred HHHHH-HHHcCCCEEEcccc--------Cc-------cHHHHHHHHHHHHHhCCCceEEecc---cC-------CHHHHH
Confidence 44444 55689998876421 11 35677889999999885 7776642 11 246788
Q ss_pred HHHHcCCCEEEEcccc------cccccCCCCCCCCCCcCcHHHHHHHH---HhCCCceEEEecCCCCHHHHHHHhhh-cC
Q psy2378 158 TVSSAGCRTFIVHARN------AFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKTKKEIDLHLNY-ID 227 (956)
Q Consensus 158 ~l~~~G~~~i~vh~r~------~~~~g~~~~~~~~~~~~~~~~i~~v~---~~~~~ipVi~nGgI~s~~da~~~l~~-ad 227 (956)
.|.++|+|+|-|--+. +...|. +-..+..+.+++ +.. ++|||+-|||.+.-|+.++|.. ||
T Consensus 165 ~L~~aGad~vkVGiGpGsiCtTr~v~Gv--------G~PQ~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd 235 (352)
T PF00478_consen 165 DLIDAGADAVKVGIGPGSICTTREVTGV--------GVPQLTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAAGAD 235 (352)
T ss_dssp HHHHTT-SEEEESSSSSTTBHHHHHHSB--------SCTHHHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-S
T ss_pred HHHHcCCCEEEEeccCCccccccccccc--------CCcHHHHHHHHHHHhhhc-cCceeecCCcCcccceeeeeeeccc
Confidence 8999999999985221 111121 112455555444 445 6999999999999999999998 99
Q ss_pred EEEEccccccCC
Q psy2378 228 GVMLGREAYKNP 239 (956)
Q Consensus 228 ~VmiGR~~l~~P 239 (956)
.||+|+.+-+--
T Consensus 236 ~VMlG~llAgt~ 247 (352)
T PF00478_consen 236 AVMLGSLLAGTD 247 (352)
T ss_dssp EEEESTTTTTBT
T ss_pred ceeechhhccCc
Confidence 999999765543
No 240
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.44 E-value=4.8e-06 Score=88.69 Aligned_cols=142 Identities=14% Similarity=0.196 Sum_probs=109.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCC----hHHHHHHHHHH-hhccCccEEEE
Q psy2378 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK----PLLVSDCIKAM-RDSVEIDITVK 138 (956)
Q Consensus 64 ~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~----~~~~~eiv~~v-~~~~~~pv~vK 138 (956)
.++-+|++|.=- . +.++.+-++|++-|=|| +...++ |+++.++++.. .+.+-+-+.+|
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k 144 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCR 144 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEE
Confidence 457899988764 3 67777888999998884 445556 99999999998 55554455555
Q ss_pred ec--------cCCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEE
Q psy2378 139 HR--------IGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 208 (956)
Q Consensus 139 ir--------~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi 208 (956)
.. -||...... ++.+++..+.+.|+..|.++ .|.+.++| .|++.++++++.+ ++|||
T Consensus 145 ~~~g~~~Va~~GW~~~t~~-~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-----------~d~el~~~l~~~~-~ipVI 211 (262)
T PLN02446 145 KKDGRYYVVTDRWQKFSDL-AVDEETLEFLAAYCDEFLVHGVDVEGKRLG-----------IDEELVALLGEHS-PIPVT 211 (262)
T ss_pred ecCCCEEEEECCCcccCCC-CHHHHHHHHHHhCCCEEEEEEEcCCCcccC-----------CCHHHHHHHHhhC-CCCEE
Confidence 21 156553332 46788899999999999887 45543333 5999999999986 89999
Q ss_pred EecCCCCHHHHHHHhhh---cCEEEEcccc
Q psy2378 209 INGGIKTKKEIDLHLNY---IDGVMLGREA 235 (956)
Q Consensus 209 ~nGgI~s~~da~~~l~~---ad~VmiGR~~ 235 (956)
++|||.|.+|+.++... +.+|.+||++
T Consensus 212 ASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 212 YAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred EECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 99999999999998774 6899999998
No 241
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.43 E-value=6e-07 Score=97.23 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++|+.+++.|++.|+++-.+... ...+.+++.++++++.+ ++||++.|||.|.+|+++++.. |+.|+
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~---------~~~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASS---------EGRTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVS 101 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCccc---------ccChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 6789999999999999999776310 12246999999999988 7999999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|+.++.||++++++.+.+
T Consensus 102 vgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 102 INTAAVKNPELIYELADRF 120 (254)
T ss_pred EChhHhhChHHHHHHHHHc
Confidence 9999999999999998754
No 242
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.43 E-value=5.9e-06 Score=92.58 Aligned_cols=203 Identities=15% Similarity=0.173 Sum_probs=131.4
Q ss_pred ccCCCceEEccCcCc------CCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec-CCCHHHHH
Q psy2378 7 KYNKRKISIAPMMNL------TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKLA 79 (956)
Q Consensus 7 ~~~~~~i~lAPM~~~------td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~-g~~~~~~~ 79 (956)
.+ .-||++||++.. .+...-+-|.+.| .-++.+- .+...+ +++-.. .+.|...||. -.|.+...
T Consensus 68 ~~-~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g-i~~~lSt-~ss~sl----Eeva~~--~~~~~wfQlY~~~Dr~~~~ 138 (367)
T PLN02493 68 KI-SMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSS-WATSSV----EEVAST--GPGIRFFQLYVYKNRNVVE 138 (367)
T ss_pred cc-cccceechHHHHhhcCCchHHHHHHHHHHcC-CCeeecC-cccCCH----HHHHhc--CCCCcEEEEeecCCHHHHH
Confidence 45 679999999642 2334444556666 3333333 222222 222221 2357899998 67888888
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceee----eCcc-----------------------cccc------cCChHHHHHHHHH
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF-----------------------GAIL------MTKPLLVSDCIKA 126 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~----~~~~-----------------------G~~l------~~~~~~~~eiv~~ 126 (956)
+..++++.+||.+|=+..-+|..-.| +.++ +..+ .-++.+-=+-++.
T Consensus 139 ~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~w 218 (367)
T PLN02493 139 QLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQW 218 (367)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHH
Confidence 88999999999998886555543111 1000 0000 0122222245788
Q ss_pred HhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCc
Q psy2378 127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PEL 205 (956)
Q Consensus 127 v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~i 205 (956)
+|+.++.||.||-=. . .+-++.+.++|+|+|.|++.-+ .. ....+.-.+.+.++++.+ .++
T Consensus 219 lr~~~~~PiivKgV~---~-------~~dA~~a~~~Gvd~I~VsnhGG-------rq-ld~~~~t~~~L~ei~~av~~~~ 280 (367)
T PLN02493 219 LQTITKLPILVKGVL---T-------GEDARIAIQAGAAGIIVSNHGA-------RQ-LDYVPATISALEEVVKATQGRI 280 (367)
T ss_pred HHhccCCCEEeecCC---C-------HHHHHHHHHcCCCEEEECCCCC-------CC-CCCchhHHHHHHHHHHHhCCCC
Confidence 999999999999332 1 3568889999999999975432 11 111133466777777664 359
Q ss_pred eEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 206 EIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 206 pVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
|||+.|||.+..|+.+.|.- ||+|++||+++
T Consensus 281 ~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 281 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred eEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 99999999999999999998 99999999765
No 243
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.41 E-value=2e-05 Score=82.17 Aligned_cols=207 Identities=11% Similarity=0.141 Sum_probs=125.4
Q ss_pred CccccccCCCceEEccCcCcCCHH-HHHHHHHcCCCcEEEecccccccccCCchhcccc-CCCCCCEEEEecC-CCHHHH
Q psy2378 2 NMINSKYNKRKISIAPMMNLTDRH-CRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDF-NAEEHPIAFQVGD-NEPKKL 78 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~~td~~-fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~-~~~~~p~~vQl~g-~~~~~~ 78 (956)
.|++..| +.|+++- -..|.+.. .+...++-| ++++-.-+=..+.--.....++.. ...+-.+...-.| .+.++.
T Consensus 2 ~i~~~~~-~SRl~~G-tgky~s~~~~~~ai~aSg-~~ivTva~rR~~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eA 78 (248)
T cd04728 2 TIGGKTF-SSRLLLG-TGKYPSPAIMKEAIEASG-AEIVTVALRRVNIGDPGGESFLDLLDKSGYTLLPNTAGCRTAEEA 78 (248)
T ss_pred eECCEEe-ecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEEEecccCCCCcchHHhhccccCCEECCCCCCCCCHHHH
Confidence 4677788 8888754 34454444 444445555 555433221111000111223322 2223333344433 578999
Q ss_pred HHHHHHHHHcC-CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHH
Q psy2378 79 AKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 157 (956)
Q Consensus 79 ~~aA~~~~~~G-~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~ 157 (956)
+..|+++++++ -|+|-|-. ..|. -.|+.|+....+-.+.+.+. |+-+..-+. ++ ...++
T Consensus 79 v~~a~lare~~~~~~iKlEV-------i~d~--~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~---dd-------~~~ar 138 (248)
T cd04728 79 VRTARLAREALGTDWIKLEV-------IGDD--KTLLPDPIETLKAAEILVKE-GFTVLPYCT---DD-------PVLAK 138 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEE-------ecCc--cccccCHHHHHHHHHHHHHC-CCEEEEEeC---CC-------HHHHH
Confidence 99999999874 57766632 2221 23666666555444444322 333321121 11 36799
Q ss_pred HHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 158 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 158 ~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+|+++|++++-.++..- | ++ .+..+++.++.+++.. ++|||+.|||.+++|+.++++. ||+|++|.+..
T Consensus 139 ~l~~~G~~~vmPlg~pI---G-sg-----~Gi~~~~~I~~I~e~~-~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 139 RLEDAGCAAVMPLGSPI---G-SG-----QGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred HHHHcCCCEeCCCCcCC---C-CC-----CCCCCHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 99999999996655531 1 11 2345799999999985 7999999999999999999998 99999999987
Q ss_pred c--CCcc
Q psy2378 237 K--NPFL 241 (956)
Q Consensus 237 ~--~P~l 241 (956)
. ||..
T Consensus 209 ~a~dP~~ 215 (248)
T cd04728 209 KAKDPVA 215 (248)
T ss_pred CCCCHHH
Confidence 5 4543
No 244
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.37 E-value=1.2e-05 Score=85.34 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=123.2
Q ss_pred CCCCCcceeeeeeecccc-cCCcchHHH---HHHHHHHHhhhcccccccceeEEEe-cCCCCCCCCHHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKS-FGNIDEKKY---LEALLIDVELSLPIILNRKIHTIFI-GGGTPSLISDTGLDYLLKNIKKL 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~-~~~~~~~~~---v~~vl~eI~~~~~~~~~~~i~~i~f-gggtPs~L~~~~l~~ll~~i~~~ 696 (956)
...-.|...|.||+.... +++.....| .+-++..++...+ +++..++ .++ |-|.|+..+ .+.++.+.+++.
T Consensus 112 Rp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~-~KgkglE-aHlDGqGEP~lYP--~l~~lVqalk~~ 187 (414)
T COG2100 112 RPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVAR-FKGKGLE-AHLDGQGEPLLYP--HLVDLVQALKEH 187 (414)
T ss_pred cCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHh-hhCCCeE-EEecCCCCCccch--hHHHHHHHHhcC
Confidence 456789999999986432 222222233 3445555444332 2334444 444 458887765 578888888775
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHh-C-CCCCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL-G-RTHDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~-~-R~~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
....-+++++|-..+++++.+.|.++|++|+.+.+.|.|++.-|.| | +.++.+.+.+..+.+.+.++++-+-=.
T Consensus 188 ---~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv- 263 (414)
T COG2100 188 ---KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPV- 263 (414)
T ss_pred ---CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeee-
Confidence 4446789999999999999999999999999999999999998877 4 368999999999999987765443222
Q ss_pred cCCCCCHHHHHHHHHHHHccCC
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSP 796 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~ 796 (956)
=+||=+.+++.+-++|+.+.+.
T Consensus 264 ~lPG~ND~E~~~iIe~A~~iGa 285 (414)
T COG2100 264 WLPGVNDDEMPKIIEWAREIGA 285 (414)
T ss_pred ecCCcChHHHHHHHHHHHHhCC
Confidence 2699999999999999998763
No 245
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.37 E-value=1.2e-05 Score=86.68 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=130.7
Q ss_pred CCCcceeeeeeecccccC-CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFG-NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~-~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
...|+..|.||.-..... .......++.+++++......+. .....|.|.||.|+ +.++.+..+++.+++. +
T Consensus 27 ~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~-~~~~~V~~sGGEPl-l~~~~~~~l~~~~k~~-g---- 99 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMN-ASGGGVTASGGEAI-LQAEFVRDWFRACKKE-G---- 99 (246)
T ss_pred ECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHh-cCCCeEEEeCccHh-cCHHHHHHHHHHHHHc-C----
Confidence 468888999997543211 11111235667777665432111 11245889999996 4667677788888763 2
Q ss_pred ceeEEEeCCCCC-CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCC-
Q psy2378 703 ISITLEANPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT- 780 (956)
Q Consensus 703 ~eitle~np~~i-t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT- 780 (956)
..+++..|-... .++.++.+.+ .++.+.+++.|.+++..+.+... +.+.+.+.++.+++.+..+.+.+++. ||.+
T Consensus 100 ~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li-~g~nd 176 (246)
T PRK11145 100 IHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVV-PGWTD 176 (246)
T ss_pred CCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEE-CCCCC
Confidence 246666665432 3466666554 36889999999999988877553 44677888888888877666666554 6654
Q ss_pred -HHHHHHHHHHHHccC-CCeEEEEeeeccCCccc------ccCCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q psy2378 781 -LSELMLDLNYAIQYS-PPHLSLYSLTIEPNTYF------FKYPPLSMPSNDENAVMQDKITSLLKNNYY 842 (956)
Q Consensus 781 -~e~~~~tl~~~~~l~-~~~i~~y~l~~~pgT~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 842 (956)
++++++.++++.+++ +.++.+.+|.+.++.+. +++...+.|+.++ +..+.+.+.+.|+
T Consensus 177 ~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----l~~~~~~~~~~g~ 242 (246)
T PRK11145 177 DDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKET----MERVKGILEQYGH 242 (246)
T ss_pred CHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHH----HHHHHHHHHHcCC
Confidence 568999999998886 57787888877766542 1222344555544 3334455555554
No 246
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.36 E-value=1e-05 Score=88.49 Aligned_cols=175 Identities=13% Similarity=0.150 Sum_probs=123.1
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCc
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNI 703 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~ 703 (956)
++-|.+.|.||.....+.......++ -++||.+....+...+++.|-+.||-|.+ .+.+..|++.+.+. ...
T Consensus 18 TdrCNfrC~YCm~eg~~~~~~~~~~L--s~eei~~~~~~~~~~Gv~kvRlTGGEPll--R~dl~eIi~~l~~~----~~~ 89 (322)
T COG2896 18 TDRCNFRCTYCMPEGPLAFLPKEELL--SLEEIRRLVRAFAELGVEKVRLTGGEPLL--RKDLDEIIARLARL----GIR 89 (322)
T ss_pred ecCcCCcccccCCCCCcccCcccccC--CHHHHHHHHHHHHHcCcceEEEeCCCchh--hcCHHHHHHHHhhc----ccc
Confidence 68999999999643311111111111 13344433332223357889999999976 34577777777764 234
Q ss_pred eeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCe-eEEEEeecCCCCCHH
Q psy2378 704 SITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNN-FNLDLIYALPNQTLS 782 (956)
Q Consensus 704 eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~-i~~dlI~GlPgqT~e 782 (956)
++++.+|-- .-+...+.|+++|++||.+.+.|.|++..+.+.+....+++.+.++.+.+.|.. |.++..+ ++|-+.+
T Consensus 90 ~islTTNG~-~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv-~kgvNd~ 167 (322)
T COG2896 90 DLSLTTNGV-LLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL-MKGVNDD 167 (322)
T ss_pred eEEEecchh-hHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE-ecCCCHH
Confidence 666665543 235678999999999999999999999999999888899999999999998653 4444333 3667889
Q ss_pred HHHHHHHHHHccCCCeEEEEeeeccCC
Q psy2378 783 ELMLDLNYAIQYSPPHLSLYSLTIEPN 809 (956)
Q Consensus 783 ~~~~tl~~~~~l~~~~i~~y~l~~~pg 809 (956)
++..-++++...++ .+.+-.|++...
T Consensus 168 ei~~l~e~~~~~~~-~lrfIE~m~~g~ 193 (322)
T COG2896 168 EIEDLLEFAKERGA-QLRFIELMPLGE 193 (322)
T ss_pred HHHHHHHHHhhcCC-ceEEEEEeecCc
Confidence 99999999999988 566666666543
No 247
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=98.36 E-value=1e-05 Score=83.69 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=107.1
Q ss_pred CCCcceeeeeeecccccC-CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCC
Q psy2378 624 IPYKVIINEAIELVKSFG-NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 702 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~-~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~ 702 (956)
+..|+..|.||..+.... ........+.+++++..... .+..+.|.||.|++. ++ +..+++.+++. +
T Consensus 23 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~-----~~~~i~~sGGEPll~-~~-l~~li~~~~~~-g---- 90 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQG-----LIDGVVITGGEPTLQ-AG-LPDFLRKVREL-G---- 90 (191)
T ss_pred cCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcC-----CCCeEEEECCcccCc-Hh-HHHHHHHHHHC-C----
Confidence 568999999997653211 11112235666666654321 246688889999764 34 77778877663 2
Q ss_pred ceeEEEeCCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHhCCCCCHH-HHHHHHHHHHhcCCeeEEE--EeecCCC
Q psy2378 703 ISITLEANPSTFEIEKFHSYSIIG-INRLSIGIQSFNNKYLNILGRTHDSK-QAKYAIEIAKQYFNNFNLD--LIYALPN 778 (956)
Q Consensus 703 ~eitle~np~~it~e~L~~L~~~G-v~risiGvQS~~d~~L~~~~R~~~~~-~~~~ai~~l~~~~~~i~~d--lI~GlPg 778 (956)
..+.+..|- .+++.++.+.++| ++.+++.+++.++...+.++++.+.+ ++.++++.+++.++.+.+- ++-|..+
T Consensus 91 ~~v~i~TNg--~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~ 168 (191)
T TIGR02495 91 FEVKLDTNG--SNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD 168 (191)
T ss_pred CeEEEEeCC--CCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC
Confidence 345555554 4678888888888 58999999997776777778776665 8999999999987655444 4434443
Q ss_pred CCHHHHHHHHHHHHccC
Q psy2378 779 QTLSELMLDLNYAIQYS 795 (956)
Q Consensus 779 qT~e~~~~tl~~~~~l~ 795 (956)
.+++.+..+++.+.+
T Consensus 169 --~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 169 --EEDLAEIATRIKENG 183 (191)
T ss_pred --HHHHHHHHHHhccCC
Confidence 568888888888776
No 248
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.36 E-value=8e-05 Score=84.09 Aligned_cols=205 Identities=11% Similarity=0.034 Sum_probs=133.3
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccc----cccc-eeEEEecC-CCCCCCCHHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPII----LNRK-IHTIFIGG-GTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~----~~~~-i~~i~fgg-gtPs~L~~~~l~~ll~~i~~ 695 (956)
..+..|+..|.||.-.+. +. .+.-..+++++++......+ .+.. ++.|.|.| |-|.+ +.+.+.+.++.+.+
T Consensus 107 Ssq~GC~~~C~FC~tg~~-g~-~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLl-n~~~v~~~l~~l~~ 183 (354)
T PRK14460 107 SCQVGCAMGCTFCSTGTM-GF-ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLL-NLDEVMRSLRTLNN 183 (354)
T ss_pred eCCCCcCCCCccCCCCCC-CC-CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccC-CHHHHHHHHHHHhh
Confidence 446789999999964432 11 11122455666653322221 1122 66776666 99876 55556666666654
Q ss_pred HcccC-CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCC---CCHHHHHHHHHHH-HhcCCeeEE
Q psy2378 696 LLLFK-KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT---HDSKQAKYAIEIA-KQYFNNFNL 770 (956)
Q Consensus 696 ~~~~~-~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~---~~~~~~~~ai~~l-~~~~~~i~~ 770 (956)
..++. ....+++.++-. .+.++.|.+.|..++.+.+.|.+++..+.+.+. ++.+++.++++.. .+.+..+.+
T Consensus 184 ~~Gl~~~~r~itvsT~G~---~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~i 260 (354)
T PRK14460 184 EKGLNFSPRRITVSTCGI---EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTF 260 (354)
T ss_pred hhccCCCCCeEEEECCCC---hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 32221 123677766543 567889999999999999999999999888553 5788888877643 334445554
Q ss_pred -EEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 771 -DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 771 -dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
.+++.-..++++++.+..+++..++. +|.+-+|.+.+|.++ +.|+.+. .....+.|.+.|+.
T Consensus 261 ey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y------~~p~~e~----v~~f~~~l~~~Gi~ 323 (354)
T PRK14460 261 EYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY------SAPTEER----ILAFEKYLWSKGIT 323 (354)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC------CCCCHHH----HHHHHHHHHHCCCe
Confidence 35555578999999999999999865 799999999888664 2354443 22334556666654
No 249
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.35 E-value=7.4e-06 Score=82.01 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHH
Q psy2378 115 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 194 (956)
Q Consensus 115 ~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~ 194 (956)
.||+.+.++++.+++.. .++..-+.. .+=+....++|+|.|.-+ +.||++.... ...||++
T Consensus 76 ~Rp~~l~~li~~i~~~~-~l~MADist-----------~ee~~~A~~~G~D~I~TT-----LsGYT~~t~~--~~pD~~l 136 (192)
T PF04131_consen 76 PRPETLEELIREIKEKY-QLVMADIST-----------LEEAINAAELGFDIIGTT-----LSGYTPYTKG--DGPDFEL 136 (192)
T ss_dssp S-SS-HHHHHHHHHHCT-SEEEEE-SS-----------HHHHHHHHHTT-SEEE-T-----TTTSSTTSTT--SSHHHHH
T ss_pred CCCcCHHHHHHHHHHhC-cEEeeecCC-----------HHHHHHHHHcCCCEEEcc-----cccCCCCCCC--CCCCHHH
Confidence 46788899999999887 777766543 234677899999999543 5667665444 4569999
Q ss_pred HHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcch
Q psy2378 195 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLM 242 (956)
Q Consensus 195 i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~ 242 (956)
++++++. ++|||+-|+|+||+++.++++. |++|.+|.+ +-+|++.
T Consensus 137 v~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsA-ITrP~~I 182 (192)
T PF04131_consen 137 VRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSA-ITRPQEI 182 (192)
T ss_dssp HHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HH-HH-HHHH
T ss_pred HHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcc-cCCHHHH
Confidence 9999985 6999999999999999999998 999999974 5566543
No 250
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.33 E-value=3.9e-05 Score=80.15 Aligned_cols=200 Identities=10% Similarity=0.139 Sum_probs=121.5
Q ss_pred CccccccCCCceEEccCcCcCCHH-HHHHHHHcCCCcEEEeccccccccc--CCchhcccc-CCCCCCEEEEec-CCCHH
Q psy2378 2 NMINSKYNKRKISIAPMMNLTDRH-CRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDF-NAEEHPIAFQVG-DNEPK 76 (956)
Q Consensus 2 ~~~~~~~~~~~i~lAPM~~~td~~-fR~~~~~~g~~~l~~tem~~~~~l~--~~~~~~~~~-~~~~~p~~vQl~-g~~~~ 76 (956)
.|++..| +.|+++- -..|.+.. .+...++-| ++++-.-+ +.+- .....++.. ...+..+...-. ..+.+
T Consensus 3 ~i~~~~~-~SRl~~G-tgky~s~~~~~~ai~asg-~~ivTval---rR~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~ 76 (250)
T PRK00208 3 TIAGKTF-SSRLLLG-TGKYPSPQVMQEAIEASG-AEIVTVAL---RRVNLGQGGDNLLDLLPPLGVTLLPNTAGCRTAE 76 (250)
T ss_pred EECCEEe-eccceEe-cCCCCCHHHHHHHHHHhC-CCeEEEEE---EeecCCCCcchHHhhccccCCEECCCCCCCCCHH
Confidence 4677788 8888654 34565554 444445555 55543322 1111 111223322 222333334443 35789
Q ss_pred HHHHHHHHHHHcC-CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHH
Q psy2378 77 KLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 155 (956)
Q Consensus 77 ~~~~aA~~~~~~G-~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~ 155 (956)
+.+..|+++++++ -++|-|-. ..|. -.++.|+....+-.+.+.+. |+-+..-+. ++ ...
T Consensus 77 eAv~~a~lare~~~~~~iKlEV-------i~d~--~~llpd~~~tv~aa~~L~~~-Gf~vlpyc~---~d-------~~~ 136 (250)
T PRK00208 77 EAVRTARLAREALGTNWIKLEV-------IGDD--KTLLPDPIETLKAAEILVKE-GFVVLPYCT---DD-------PVL 136 (250)
T ss_pred HHHHHHHHHHHHhCCCeEEEEE-------ecCC--CCCCcCHHHHHHHHHHHHHC-CCEEEEEeC---CC-------HHH
Confidence 9999999999864 57766632 2221 12455555444444443221 333321121 11 367
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
+++|+++|+++|-.++..- | ++ .+..+++.++.+++.. ++|||+.|||.+++|+.++++. ||+|++|.+
T Consensus 137 ak~l~~~G~~~vmPlg~pI---G-sg-----~gi~~~~~i~~i~e~~-~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPI---G-SG-----LGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred HHHHHHcCCCEeCCCCcCC---C-CC-----CCCCCHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 9999999999995554431 1 11 2345788899999875 8999999999999999999998 999999999
Q ss_pred ccc
Q psy2378 235 AYK 237 (956)
Q Consensus 235 ~l~ 237 (956)
...
T Consensus 207 Itk 209 (250)
T PRK00208 207 IAV 209 (250)
T ss_pred hhC
Confidence 875
No 251
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.28 E-value=4.1e-05 Score=85.68 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=117.4
Q ss_pred CCCCcceeeeeeecccccCCc-chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 623 KIPYKVIINEAIELVKSFGNI-DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~-~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
-+..|...|.+|...+..... ...-..+.+++.+.. ..+..|.|.||-|.+-+ .+.++++.+.+.
T Consensus 34 ~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e-------~g~~~V~i~GGEPLL~p--dl~eiv~~~~~~----- 99 (318)
T TIGR03470 34 PLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE-------CGAPVVSIPGGEPLLHP--EIDEIVRGLVAR----- 99 (318)
T ss_pred cccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH-------cCCCEEEEeCccccccc--cHHHHHHHHHHc-----
Confidence 356899999999643321111 001112333333332 12456889999998753 367788877653
Q ss_pred CceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 702 ~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
...+++.+|-..+++ .++.+++.|...+++.+.+..+..-+..++..+.+.+.++++.+++.|+.+.+.+.+ +++++.
T Consensus 100 g~~v~l~TNG~ll~~-~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv-~~~~n~ 177 (318)
T TIGR03470 100 KKFVYLCTNALLLEK-KLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL-FNDTDP 177 (318)
T ss_pred CCeEEEecCceehHH-HHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEE-eCCCCH
Confidence 235777788766654 577788889888999888875444444467788999999999999988776665433 368999
Q ss_pred HHHHHHHHHHHccCCCeEEEEeeeccC
Q psy2378 782 SELMLDLNYAIQYSPPHLSLYSLTIEP 808 (956)
Q Consensus 782 e~~~~tl~~~~~l~~~~i~~y~l~~~p 808 (956)
+++.+.++++.+++++.+.+.+..+..
T Consensus 178 ~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 178 EEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 999999999999999998877655443
No 252
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.26 E-value=2.8e-05 Score=87.35 Aligned_cols=171 Identities=14% Similarity=0.039 Sum_probs=118.7
Q ss_pred CCCcceeeeeeecccccCCcc--hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 624 IPYKVIINEAIELVKSFGNID--EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~--~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
+..|+..|.||.......... ....+..+++.+.. ...+..|.|.||.|..++...+..+++.+++.-.+ .
T Consensus 120 T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~------~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~-~ 192 (331)
T TIGR00238 120 KGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAE------HPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHL-V 192 (331)
T ss_pred CCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHh------CCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCc-c
Confidence 567999999997533222111 12334445555432 12467899999999998887788888888764111 1
Q ss_pred CceeEEEe---CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEE--EEeecC
Q psy2378 702 NISITLEA---NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYAL 776 (956)
Q Consensus 702 ~~eitle~---np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~--dlI~Gl 776 (956)
...+..+. +|..+++++++.|++.|+..+.+..-+..+++ .+++.++++.++++|+.+.. -++-|
T Consensus 193 ~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvLl~g- 262 (331)
T TIGR00238 193 RLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVLLRG- 262 (331)
T ss_pred EEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecceECC-
Confidence 12333322 36678999999999999988877755544432 26788999999999875543 33334
Q ss_pred CCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcc
Q psy2378 777 PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTY 811 (956)
Q Consensus 777 PgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~ 811 (956)
=.++.+++.+..+.+.++++....+|.+.+.+|+.
T Consensus 263 vnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~ 297 (331)
T TIGR00238 263 VNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAK 297 (331)
T ss_pred cCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcc
Confidence 35678889999999999999988899999988873
No 253
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.24 E-value=3.3e-05 Score=87.94 Aligned_cols=188 Identities=12% Similarity=0.124 Sum_probs=133.8
Q ss_pred CCCcceeeeeeecccccCCcc---hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 624 IPYKVIINEAIELVKSFGNID---EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~---~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
+..|+..|.||......+... ...-+...++.|+.. ..+..|.|.||.|..++.+.++.+++.+++. +
T Consensus 115 T~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~------p~I~~VlLSGGDPLll~d~~L~~iL~~L~~I---p 185 (417)
T TIGR03820 115 SNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNT------PQIRDVLLSGGDPLLLSDDYLDWILTELRAI---P 185 (417)
T ss_pred cCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhc------CCCCEEEEeCCccccCChHHHHHHHHHHhhc---C
Confidence 578999999996543323222 222334444444321 3478899999999999998888888888773 2
Q ss_pred CCceeEEEeC-----CCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCee--EEEEe
Q psy2378 701 KNISITLEAN-----PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNF--NLDLI 773 (956)
Q Consensus 701 ~~~eitle~n-----p~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i--~~dlI 773 (956)
....+++-++ |..+|+++++.|++.+. +.++++.-++..+ .+++.+|++.++++|+.+ ..-++
T Consensus 186 hV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~--~~v~~h~nhp~Ei--------t~~a~~Al~~L~~aGI~l~nQsVLL 255 (417)
T TIGR03820 186 HVEVIRIGTRVPVVLPQRITDELVAILKKHHP--VWLNTHFNHPREI--------TASSKKALAKLADAGIPLGNQSVLL 255 (417)
T ss_pred CCceEEEeeccccccccccCHHHHHHHHhcCC--eEEEEeCCChHhC--------hHHHHHHHHHHHHcCCEEEeeceEE
Confidence 2234677777 88899999999999985 5556655555542 589999999999998755 35566
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
=| =.++.+.+.+-.+.+.+.++.---+|.+.+.+|+.-++- +.++-.++++.+...+
T Consensus 256 kG-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv------~~~~g~~I~~~lr~~~ 312 (417)
T TIGR03820 256 AG-VNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRT------PVGKGIEIIESLIGHT 312 (417)
T ss_pred CC-cCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccC------cHHHHHHHHHHHHHhC
Confidence 67 578899999999999999998888888889999865543 2344445555544443
No 254
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.23 E-value=0.00011 Score=82.21 Aligned_cols=201 Identities=10% Similarity=0.035 Sum_probs=127.9
Q ss_pred CCCcceeeeeeecccccCC-----cchHHHHHHHHHHHhhh----cccccc------------cceeEEEec-CCCCCCC
Q psy2378 624 IPYKVIINEAIELVKSFGN-----IDEKKYLEALLIDVELS----LPIILN------------RKIHTIFIG-GGTPSLI 681 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~-----~~~~~~v~~vl~eI~~~----~~~~~~------------~~i~~i~fg-ggtPs~L 681 (956)
...|+.+|.||.-...... ......++.|++++... ...+++ ..++.+.|. +|-|++.
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~ 144 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY 144 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch
Confidence 3569999999975432210 01122245566665432 111111 113445554 5888864
Q ss_pred CHHHHHHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCC---CCHHHHHHHH
Q psy2378 682 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT---HDSKQAKYAI 758 (956)
Q Consensus 682 ~~~~l~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~---~~~~~~~~ai 758 (956)
+ .+.++++.+++. ...+.+.+|-. .++.++.| ..+.+.+.+.+.+.+++..+.+.|+ .+.+.+.+.+
T Consensus 145 -p-~l~eli~~~k~~-----Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L 214 (322)
T PRK13762 145 -P-YLPELIEEFHKR-----GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETL 214 (322)
T ss_pred -h-hHHHHHHHHHHc-----CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH
Confidence 3 588888888764 23455666653 36778888 7789999999999999999999874 5788999999
Q ss_pred HHHHhcCCeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHH
Q psy2378 759 EIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 836 (956)
Q Consensus 759 ~~l~~~~~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~ 836 (956)
+.+++.+..+.+-+.+ +||.+..+..+-++++.+++++.|.+-+|.+..... ++......++.++..+....+.+.
T Consensus 215 ~~l~~~~~~~~ir~tl-v~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k-~~l~~~~~p~~eev~~~~~~l~~~ 290 (322)
T PRK13762 215 ELLPSKKTRTVIRITL-VKGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR-NRLTRDNMPSHEEVREFAKELAEY 290 (322)
T ss_pred HHHHhCCCCEEEEEEE-ECCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc-ccccccCCcCHHHHHHHHHHHHHh
Confidence 9999875544433322 455555555577788888999999998888765543 222222356666655554444333
No 255
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.22 E-value=8.5e-05 Score=81.17 Aligned_cols=198 Identities=13% Similarity=0.081 Sum_probs=126.9
Q ss_pred ccccCCCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhcccc-C-CCCCCEEEEecCCCHHHHHHHH
Q psy2378 5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDF-N-AEEHPIAFQVGDNEPKKLAKSA 82 (956)
Q Consensus 5 ~~~~~~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~-~-~~~~p~~vQl~g~~~~~~~~aA 82 (956)
+..+ +-|++-|.|.++++..+.....++|+.+.+ ==+.+.+... .+... . +....+.+.+ |-.++++.++.
T Consensus 41 ~~~~-~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~~~----~~v~~~~~~~~~~~~vsv-G~~~~d~er~~ 113 (343)
T TIGR01305 41 QTYS-GVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDEWK----AFATNSSPDCLQNVAVSS-GSSDNDLEKMT 113 (343)
T ss_pred ceee-CCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHHHH----HHHHhhcccccceEEEEe-ccCHHHHHHHH
Confidence 3445 789999999999999999877788854222 2222222221 11111 1 1223355544 67788888888
Q ss_pred HHHHH-cCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHH
Q psy2378 83 KIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 161 (956)
Q Consensus 83 ~~~~~-~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~ 161 (956)
.+++. .|.|.|=|-.. .| +.+.+.+.++.+|+.++-+..+|=-. - +.+-++.|.+
T Consensus 114 ~L~~a~~~~d~iviD~A--------hG-------hs~~~i~~ik~ir~~~p~~~viaGNV--~-------T~e~a~~Li~ 169 (343)
T TIGR01305 114 SILEAVPQLKFICLDVA--------NG-------YSEHFVEFVKLVREAFPEHTIMAGNV--V-------TGEMVEELIL 169 (343)
T ss_pred HHHhcCCCCCEEEEECC--------CC-------cHHHHHHHHHHHHhhCCCCeEEEecc--c-------CHHHHHHHHH
Confidence 77665 36888766432 22 36778999999999886555565212 1 2356788999
Q ss_pred cCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC--CceEEEecCCCCHHHHHHHhhh-cCEEEEcccc
Q psy2378 162 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 162 ~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~ 235 (956)
+|+|+|-|.-+.+.. .+++.....+-+.+..+.++++... ++|||+-|||.+.-|+.++|.. ||+||+|.-+
T Consensus 170 aGAD~ikVgiGpGSi--cttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 170 SGADIVKVGIGPGSV--CTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMF 244 (343)
T ss_pred cCCCEEEEcccCCCc--ccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhh
Confidence 999999876221100 0001111122135666666666542 6899999999999999999998 9999999433
No 256
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.22 E-value=1.3e-05 Score=85.75 Aligned_cols=149 Identities=14% Similarity=0.187 Sum_probs=106.4
Q ss_pred CCCEEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe-
Q psy2378 63 EHPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH- 139 (956)
Q Consensus 63 ~~p~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi- 139 (956)
..++-+|+.|. +.++.. .+-++|+|-|=+ |+...++|+++.++.+...+.+-+-+.+|.
T Consensus 72 ~~~~~v~vgGGIrs~e~~~----~~l~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~ivvslD~k~~ 133 (243)
T TIGR01919 72 LLVVVEELSGGRRDDSSLR----AALTGGRARVNG--------------GTAALENPWWAAAVIRYGGDIVAVGLDVLED 133 (243)
T ss_pred HCCCCEEEcCCCCCHHHHH----HHHHcCCCEEEE--------------CchhhCCHHHHHHHHHHccccEEEEEEEecC
Confidence 34567899864 555433 334468887755 455678999999999887554433344441
Q ss_pred -------ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEe
Q psy2378 140 -------RIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN 210 (956)
Q Consensus 140 -------r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~n 210 (956)
-.||.... ....++++.+++.|+..+.++ .|.+..+| .|++.++++++.. ++|||++
T Consensus 134 g~~~~v~~~Gw~~~~--~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G-----------~d~~l~~~l~~~~-~~pvias 199 (243)
T TIGR01919 134 GEWHTLGNRGWSDGG--GDLEVLERLLDSGGCSRVVVTDSKKDGLSGG-----------PNELLLEVVAART-DAIVAAS 199 (243)
T ss_pred CceEEEECCCeecCC--CcHHHHHHHHHhCCCCEEEEEecCCcccCCC-----------cCHHHHHHHHhhC-CCCEEEE
Confidence 12565422 257899999999999999887 44433333 5999999999886 8999999
Q ss_pred cCCCCHHHHHHH--hhh--cCEEEEccccccCCcchH
Q psy2378 211 GGIKTKKEIDLH--LNY--IDGVMLGREAYKNPFLMS 243 (956)
Q Consensus 211 GgI~s~~da~~~--l~~--ad~VmiGR~~l~~P~l~~ 243 (956)
|||.|.+|..++ +.. +++|.+|++++.+--=+.
T Consensus 200 GGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~ 236 (243)
T TIGR01919 200 GGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLE 236 (243)
T ss_pred CCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHH
Confidence 999999999987 332 999999999876654333
No 257
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.21 E-value=4.1e-05 Score=83.01 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=106.1
Q ss_pred CCCCCEEEEecCCCHH--------HHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC
Q psy2378 61 AEEHPIAFQVGDNEPK--------KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 132 (956)
Q Consensus 61 ~~~~p~~vQl~g~~~~--------~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 132 (956)
....|+|..+-..+|. +..+.|+..+++|+++|-++. ..+.+|++ .+.++++++.++
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt-------e~~~f~g~--------~~~l~~v~~~v~ 111 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT-------DERFFQGS--------LEYLRAARAAVS 111 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec-------ccccCCCC--------HHHHHHHHHhcC
Confidence 3446888888665554 357888888899999995542 23445555 466788888889
Q ss_pred ccEEEEecc------------CCCC------CCcHHHHHHHHHH--------------------HHHcCCCEEEEccccc
Q psy2378 133 IDITVKHRI------------GIDD------INSYDFVRDFVGT--------------------VSSAGCRTFIVHARNA 174 (956)
Q Consensus 133 ~pv~vKir~------------g~~~------~~~~~~~~~~a~~--------------------l~~~G~~~i~vh~r~~ 174 (956)
+||..|--+ |-|- ..+.+++.++.+. +.++|++.|-+|+|+.
T Consensus 112 iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 112 LPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc
Confidence 999987321 1000 0001122222222 2334444444444431
Q ss_pred ccccCCCCCCCCCCcCcHHHHHHHHHhCCC-ceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 175 FLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 175 ~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~-ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
.....+++...++.+.+|+ +|+|+-|||.+++++.++++. +|+|.+|++++..++.-..+++
T Consensus 192 -----------~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~ 255 (260)
T PRK00278 192 -----------KTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRE 255 (260)
T ss_pred -----------ccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHH
Confidence 1113467788888887764 699999999999999999988 9999999999998887665554
No 258
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.20 E-value=3e-05 Score=88.25 Aligned_cols=214 Identities=8% Similarity=0.010 Sum_probs=117.0
Q ss_pred CceEEccCc-CcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCC--CHHHHHHHHHHHHH
Q psy2378 11 RKISIAPMM-NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDN--EPKKLAKSAKIIQK 87 (956)
Q Consensus 11 ~~i~lAPM~-~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~--~~~~~~~aA~~~~~ 87 (956)
-+|+.+||+ |+|...+---+-+.|+.+.+=+...+.+.+-..-.++-.....++|+.|.|+.+ +|+...+..+.+.+
T Consensus 14 yPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le 93 (418)
T cd04742 14 YAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLR 93 (418)
T ss_pred ccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHH
Confidence 399999999 799998876566677665555555555444211111111112278999999853 44444555667788
Q ss_pred cCCCEEEecC-CCCcce-eeeCcccccccCChHHHHHHHHHHhhccCccEEEEec-c-------CCCCCCcHHH------
Q psy2378 88 WGYDEINLNC-GCPSNR-VQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR-I-------GIDDINSYDF------ 151 (956)
Q Consensus 88 ~G~d~IeiN~-gCP~~~-~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir-~-------g~~~~~~~~~------ 151 (956)
.|+..|+... +-|-+. ++-...|-. .+.+. .+ .....|..|+. . +......++.
T Consensus 94 ~gV~~ve~sa~~~~~p~~~~~r~~G~~--~~~~g--~~------~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 94 HGVRVVEASAFMQLTPALVRYRAKGLR--RDADG--RV------QIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred cCCCEEEeccccCCCcchhhHHhcCCc--ccccc--cc------cccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 8999888753 111111 000000000 00000 00 00122444431 1 1100000000
Q ss_pred -HHHHHHHHHHcC-CCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-------CCceEEEecCCCCHHHHHHH
Q psy2378 152 -VRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------PELEIIINGGIKTKKEIDLH 222 (956)
Q Consensus 152 -~~~~a~~l~~~G-~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-------~~ipVi~nGgI~s~~da~~~ 222 (956)
+.+-|+.+++.| +|.|++. .. ..|+.+. . ....-+..+.++++.+ .+||||+.|||.|++++..+
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~E--AGGH~g~--~-~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA 237 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-AD--SGGHTDN--R-PLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAA 237 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-cc--CCCCCCC--c-cHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHH
Confidence 123355666666 6999997 22 3344322 1 1112334555555443 15999999999999999999
Q ss_pred hhh-cCEEEEccccccCCc
Q psy2378 223 LNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 223 l~~-ad~VmiGR~~l~~P~ 240 (956)
+.- ||+|++|..++.-+.
T Consensus 238 ~alGAd~V~~GT~flat~E 256 (418)
T cd04742 238 FALGADFIVTGSINQCTVE 256 (418)
T ss_pred HHcCCcEEeeccHHHhCcc
Confidence 988 999999999888664
No 259
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.17 E-value=8.5e-05 Score=84.98 Aligned_cols=175 Identities=11% Similarity=-0.006 Sum_probs=117.4
Q ss_pred CCCc---ceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 624 IPYK---VIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 624 ~P~c---~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
|-.| .+.|.||.-... ........++.+++++......+.. ....+.|.||-+..+.+ .+.++++.+++. +
T Consensus 29 c~~C~~~~~~C~yC~~~~~-e~~g~~~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~-~l~eLl~~lk~~-g-- 102 (404)
T TIGR03278 29 CKNCPPGTKGCDYCTRSVW-EINGDFIPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYP-ELEELTKGLSDL-G-- 102 (404)
T ss_pred CCcCCCCCCCCCCCCchhh-hhcCCcCCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCH-HHHHHHHHHHhC-C--
Confidence 4455 447888842111 1111223367788888765543321 23445555554445554 578888888874 2
Q ss_pred CCceeEEE-eCCC-CCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCC
Q psy2378 701 KNISITLE-ANPS-TFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 778 (956)
Q Consensus 701 ~~~eitle-~np~-~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPg 778 (956)
..+.+. +|-. ..+++.++.+.+.|+..+.+.+.|.|++..+.+-...+.+.+.+.++.+.+. ..+.+-++ =+||
T Consensus 103 --i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~iv-lIPG 178 (404)
T TIGR03278 103 --LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASV-IIPG 178 (404)
T ss_pred --CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEE-EeCC
Confidence 235555 5543 4588999999999999999999999999999865544558899999888885 44443222 2477
Q ss_pred CCH-HHHHHHHHHHHccCCCeEEEEeeeccC
Q psy2378 779 QTL-SELMLDLNYAIQYSPPHLSLYSLTIEP 808 (956)
Q Consensus 779 qT~-e~~~~tl~~~~~l~~~~i~~y~l~~~p 808 (956)
-+. +++.++++++.++++..+.+.+|....
T Consensus 179 iND~eel~~ti~~L~~lg~~~V~L~~y~~~g 209 (404)
T TIGR03278 179 VNDGDVLWKTCADLESWGAKALILMRFANTE 209 (404)
T ss_pred ccCcHHHHHHHHHHHHCCCCEEEEEeccccc
Confidence 765 566799999999999988888887543
No 260
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.15 E-value=6.2e-05 Score=79.62 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=101.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
+-|++++=+..++. -++.+.++|+|+|=+.. + .+ .++.+.++++..+. .++.+.+-+. +
T Consensus 72 ~iPi~~~~~i~~~~----~v~~~~~~Gad~v~l~~--~------------~~-~~~~~~~~~~~~~~-~g~~~~v~v~-~ 130 (217)
T cd00331 72 SLPVLRKDFIIDPY----QIYEARAAGADAVLLIV--A------------AL-DDEQLKELYELARE-LGMEVLVEVH-D 130 (217)
T ss_pred CCCEEECCeecCHH----HHHHHHHcCCCEEEEee--c------------cC-CHHHHHHHHHHHHH-cCCeEEEEEC-C
Confidence 56777654446664 25556779999998742 1 11 23677778777754 4665544443 2
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEEEecCCCCHHHHHH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDL 221 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi~nGgI~s~~da~~ 221 (956)
| +-++.+.+.|++.+-+++++... .+.+++.+.++++.+ +++||++.|||.+++++.+
T Consensus 131 ~----------~e~~~~~~~g~~~i~~t~~~~~~-----------~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~ 189 (217)
T cd00331 131 E----------EELERALALGAKIIGINNRDLKT-----------FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKR 189 (217)
T ss_pred H----------HHHHHHHHcCCCEEEEeCCCccc-----------cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHH
Confidence 1 12566778999999999776311 135678889998876 3699999999999999999
Q ss_pred Hhhh-cCEEEEccccccCCcchHHHH
Q psy2378 222 HLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 222 ~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
+++. ||+|.+|++++..++....++
T Consensus 190 ~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 190 LAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred HHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 9988 999999999998887655443
No 261
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.15 E-value=2.4e-05 Score=89.28 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=110.8
Q ss_pred CCCCCEEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEE
Q psy2378 61 AEEHPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDIT 136 (956)
Q Consensus 61 ~~~~p~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~ 136 (956)
...-|+-..+.+. +++++++.|+.+.+.||+.|.|..|.+... .+++++..++++++|+.++ .++.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~ 193 (357)
T cd03316 124 RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLM 193 (357)
T ss_pred CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 3445666666555 599999999999999999999998754211 1779999999999999984 5677
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH
Q psy2378 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 216 (956)
Q Consensus 137 vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~ 216 (956)
+..--+|+ .+++.++++.+++.|++++.- . .++.+++..+++++.. ++||++...+.++
T Consensus 194 vDaN~~~~----~~~a~~~~~~l~~~~i~~iEq---------------P-~~~~~~~~~~~l~~~~-~ipi~~dE~~~~~ 252 (357)
T cd03316 194 VDANGRWD----LAEAIRLARALEEYDLFWFEE---------------P-VPPDDLEGLARLRQAT-SVPIAAGENLYTR 252 (357)
T ss_pred EECCCCCC----HHHHHHHHHHhCccCCCeEcC---------------C-CCccCHHHHHHHHHhC-CCCEEeccccccH
Confidence 76655664 356889999999998887731 1 1234788899999987 7999999999999
Q ss_pred HHHHHHhhh--cCEEEEc
Q psy2378 217 KEIDLHLNY--IDGVMLG 232 (956)
Q Consensus 217 ~da~~~l~~--ad~VmiG 232 (956)
+++.++++. +|.|.+-
T Consensus 253 ~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 253 WEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred HHHHHHHHhCCCCEEecC
Confidence 999999986 9988763
No 262
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.15 E-value=2.6e-05 Score=83.15 Aligned_cols=141 Identities=13% Similarity=0.201 Sum_probs=101.8
Q ss_pred EEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe----
Q psy2378 66 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH---- 139 (956)
Q Consensus 66 ~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi---- 139 (956)
+=+|+.|. +.++ ++.+-++|++-|=| |+...++|+++.++.+..-+.+-+-+.+|-
T Consensus 77 ~pi~vGGGIrs~e~----v~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~ 138 (234)
T PRK13587 77 KDIEVGGGIRTKSQ----IMDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIK 138 (234)
T ss_pred CeEEEcCCcCCHHH----HHHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEE
Confidence 44888764 4444 33444578887644 566778999999999887544323333331
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc--cccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 217 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~--r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~ 217 (956)
..||.+.... +..++++.+++.|+..+.+.. |.+..+| .|++.+.++.+.. ++|||+.|||.|++
T Consensus 139 ~~gw~~~~~~-~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-----------~~~~li~~l~~~~-~ipvi~~GGi~s~e 205 (234)
T PRK13587 139 VNGWEEDTEL-NLFSFVRQLSDIPLGGIIYTDIAKDGKMSG-----------PNFELTGQLVKAT-TIPVIASGGIRHQQ 205 (234)
T ss_pred ecCCcccCCC-CHHHHHHHHHHcCCCEEEEecccCcCCCCc-----------cCHHHHHHHHHhC-CCCEEEeCCCCCHH
Confidence 2256543322 367899999999999887763 3322222 5999999999876 79999999999999
Q ss_pred HHHHHhhh-cCEEEEcccccc
Q psy2378 218 EIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 218 da~~~l~~-ad~VmiGR~~l~ 237 (956)
|++++++. +++|.+|+++..
T Consensus 206 di~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 206 DIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHcCCCEEEEhHHHHh
Confidence 99999977 999999998876
No 263
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.15 E-value=2.9e-05 Score=82.92 Aligned_cols=145 Identities=13% Similarity=0.244 Sum_probs=101.3
Q ss_pred EEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc---
Q psy2378 67 AFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--- 141 (956)
Q Consensus 67 ~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--- 141 (956)
-+|+.|. +.++.. .+-++|+|-|=| |+...++|+++.++ ...-+.+ -+++-.+-
T Consensus 75 ~v~vGGGIrs~e~~~----~~l~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~~i--vvslD~k~g~v 133 (241)
T PRK14114 75 HIQIGGGIRSLDYAE----KLRKLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDVEP--VFSLDTRGGKV 133 (241)
T ss_pred cEEEecCCCCHHHHH----HHHHCCCCEEEE--------------CchhhCCHHHHHHH-HHhCCCE--EEEEEccCCEE
Confidence 4788764 444433 334578887755 45567899999999 4443332 23333322
Q ss_pred ---CCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH
Q psy2378 142 ---GIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 216 (956)
Q Consensus 142 ---g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~ 216 (956)
||...... ...++++.+++.|+..+.+. .|.+..+| .|++.++++++.. ++|||++|||.|.
T Consensus 134 ~~~gw~~~~~~-~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-----------~d~el~~~l~~~~-~~pviasGGv~s~ 200 (241)
T PRK14114 134 AFKGWLAEEEI-DPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTRKIAIEA-EVKVFAAGGISSE 200 (241)
T ss_pred eeCCCeecCCC-CHHHHHHHHHhcCCCEEEEEeechhhcCCC-----------cCHHHHHHHHHHC-CCCEEEECCCCCH
Confidence 45443222 36799999999999999887 44433333 5999999999886 8999999999999
Q ss_pred HHHHHHhh------h-cCEEEEccccccCCcchHHH
Q psy2378 217 KEIDLHLN------Y-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 217 ~da~~~l~------~-ad~VmiGR~~l~~P~l~~~i 245 (956)
+|..++.. . +++|.+|++++.+--=+.++
T Consensus 201 ~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~ 236 (241)
T PRK14114 201 NSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_pred HHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHH
Confidence 99998876 4 99999999987665434433
No 264
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.15 E-value=0.00011 Score=80.26 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=126.5
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhcc-ccCCC-CCCEEEEecCCCHHHHHHHHHHHHH
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCL-DFNAE-EHPIAFQVGDNEPKKLAKSAKIIQK 87 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~-~~~~~-~~p~~vQl~g~~~~~~~~aA~~~~~ 87 (956)
+-|++-|+|.++++..+.....++|+.. ++==+.+.+.. ..+. ..+++ ...+.+.+ |-.++++.++.++++.
T Consensus 46 giPii~AnMdTV~~~~mA~~la~~g~~~-~iHk~~~~e~~----~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~L~~~ 119 (346)
T PRK05096 46 GVPIIAANMDTVGTFEMAKALASFDILT-AVHKHYSVEEW----AAFVNNSSADVLKHVMVST-GTSDADFEKTKQILAL 119 (346)
T ss_pred CCceEecCCCccccHHHHHHHHHCCCeE-EEecCCCHHHH----HHHHHhccccccceEEEEe-cCCHHHHHHHHHHHhc
Confidence 5799999999999999998777887532 22112222221 1111 11211 13355544 6677889998887774
Q ss_pred -cCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCC
Q psy2378 88 -WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCR 165 (956)
Q Consensus 88 -~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~ 165 (956)
+|+|.|=|-.. +| +.+.+.++++.+|+.. +.+|.+- +.. +.+-++.|.++|+|
T Consensus 120 ~~g~D~iviD~A--------hG-------hs~~~i~~ik~ik~~~P~~~vIaG---NV~-------T~e~a~~Li~aGAD 174 (346)
T PRK05096 120 SPALNFICIDVA--------NG-------YSEHFVQFVAKAREAWPDKTICAG---NVV-------TGEMVEELILSGAD 174 (346)
T ss_pred CCCCCEEEEECC--------CC-------cHHHHHHHHHHHHHhCCCCcEEEe---ccc-------CHHHHHHHHHcCCC
Confidence 78998777532 22 3677899999999986 4666543 111 34678889999999
Q ss_pred EEEEccc------ccccccCCCCCCCCCCcCcHHHHHHHH---HhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccc
Q psy2378 166 TFIVHAR------NAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 166 ~i~vh~r------~~~~~g~~~~~~~~~~~~~~~~i~~v~---~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~ 235 (956)
++-|--+ |+...| .+-..+..+.+++ +.. ++|||+-|||.+.-|+.++|.. ||+||+|.-+
T Consensus 175 ~vKVGIGpGSiCtTr~vtG--------vG~PQltAV~~~a~~a~~~-gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 175 IVKVGIGPGSVCTTRVKTG--------VGYPQLSAVIECADAAHGL-GGQIVSDGGCTVPGDVAKAFGGGADFVMLGGML 245 (346)
T ss_pred EEEEcccCCccccCccccc--------cChhHHHHHHHHHHHHHHc-CCCEEecCCcccccHHHHHHHcCCCEEEeChhh
Confidence 9987422 111112 1112444444443 344 7999999999999999999998 9999999977
Q ss_pred ccCCcch
Q psy2378 236 YKNPFLM 242 (956)
Q Consensus 236 l~~P~l~ 242 (956)
-+-..-+
T Consensus 246 AGt~EsP 252 (346)
T PRK05096 246 AGHEESG 252 (346)
T ss_pred cCcccCC
Confidence 6654433
No 265
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.15 E-value=0.00033 Score=79.43 Aligned_cols=202 Identities=13% Similarity=0.083 Sum_probs=130.3
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccc----ccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHH-c
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPI----ILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKL-L 697 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~----~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~-~ 697 (956)
+-.|+..|.||.-.+. +... .-...++++++....+. .....+..|.|.| |-|.. +.+.+.++++.+.+. .
T Consensus 128 q~GCnl~C~FC~tg~~-g~~r-nLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLl-n~d~v~~~i~~l~~~~~ 204 (368)
T PRK14456 128 QAGCALRCSFCATGQM-GFRR-NLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLL-NTDNVFEAVLTLSTRKY 204 (368)
T ss_pred cCCCCCCCCCCCCCCC-CCCC-CCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcccc-CHHHHHHHHHHHhcccc
Confidence 5789999999975432 2111 11123333333211111 1123467788888 99865 445567777766553 2
Q ss_pred ccC-CCceeEEEeCCCCCCHHHHHHHHHcCCC-eEEecCCCCCHHHHHHh----CCCCCHHHHHHHHHH-HHhcCCee--
Q psy2378 698 LFK-KNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNIL----GRTHDSKQAKYAIEI-AKQYFNNF-- 768 (956)
Q Consensus 698 ~~~-~~~eitle~np~~it~e~L~~L~~~Gv~-risiGvQS~~d~~L~~~----~R~~~~~~~~~ai~~-l~~~~~~i-- 768 (956)
.+. ....+++..+- +.+ .++.|.+.|.. ++.+.+.|.+++..+.+ +|.++.+++.++++. +++.+..+
T Consensus 205 ~~~is~r~ItisT~G--l~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~i 281 (368)
T PRK14456 205 RFSISQRKITISTVG--ITP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTL 281 (368)
T ss_pred ccCcCcCeeEEECCC--ChH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 211 12366666653 444 47889999985 99999999999999988 357899999999974 55556554
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 769 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 769 ~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+.-+|-|+ .++++++.+.++++..+. -++.+-+|.+.++.++. .|+.+. .....+.|.+.|+.
T Consensus 282 eyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~~------~ps~e~----i~~F~~~L~~~Gi~ 344 (368)
T PRK14456 282 VYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKFE------PVCSST----RERFRDRLLDAGLQ 344 (368)
T ss_pred EEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCCC------CCCHHH----HHHHHHHHHHCCCc
Confidence 44455443 588999999999999884 57888888888776542 344433 23335667777765
No 266
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.14 E-value=1.8e-05 Score=88.52 Aligned_cols=192 Identities=13% Similarity=0.180 Sum_probs=117.5
Q ss_pred CCceEEccCcCcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCC------------HHH
Q psy2378 10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE------------PKK 77 (956)
Q Consensus 10 ~~~i~lAPM~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~------------~~~ 77 (956)
+.||+.+||..+|+...-.-.-..|+.+.+=.-....+.+-....+.. ....+|...+.+++. ...
T Consensus 14 ~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~--~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~ 91 (336)
T COG2070 14 KYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIR--ALTDKPFVANNFGSAPAPVNVNILVARRNA 91 (336)
T ss_pred cCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHH--HhcCCcchhcccccccccchhheecccccc
Confidence 459999999999999988766666666622111112111111111111 112333333333311 133
Q ss_pred HHHHHHH-HHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHH
Q psy2378 78 LAKSAKI-IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFV 156 (956)
Q Consensus 78 ~~~aA~~-~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a 156 (956)
+.+.+.. ++.+|...+-..+|=| | .+.++.++. .++.|..++-. ...+
T Consensus 92 ~~~~~~~ii~~~~vpvv~~~~g~~----------------~---~~~i~~~~~-~g~~v~~~v~~-----------~~~A 140 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVSTSFGAP----------------P---AEFVARLKA-AGIKVIHSVIT-----------VREA 140 (336)
T ss_pred hHHhhhhHHhcCCCCEEeccCCCC----------------c---HHHHHHHHH-cCCeEEEEeCC-----------HHHH
Confidence 3333332 3344655555554421 1 345556655 57777776543 5779
Q ss_pred HHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCC-ceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 157 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 157 ~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~-ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
++.++.|+|.|.+.+-.. .|+.|. ....+.-...+.++++.+ + ||||+.|||.|.+++..+++. ||+|.+|..
T Consensus 141 ~~~~~~G~d~vI~~g~eA--GGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~ 215 (336)
T COG2070 141 LKAERAGADAVIAQGAEA--GGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALALGADGVQMGTR 215 (336)
T ss_pred HHHHhCCCCEEEecCCcC--CCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHHhccHHHHhhhh
Confidence 999999999999987642 344332 111223467889999998 7 999999999999999999998 999999997
Q ss_pred cccCC
Q psy2378 235 AYKNP 239 (956)
Q Consensus 235 ~l~~P 239 (956)
++.-.
T Consensus 216 Fl~t~ 220 (336)
T COG2070 216 FLATK 220 (336)
T ss_pred hhccc
Confidence 76543
No 267
>KOG1606|consensus
Probab=98.13 E-value=1.2e-05 Score=79.93 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
++-|++++++|+-.|-.----|... +...|-+-|.||+.+.|| ++++.+||..|.|+|. +++ |++
T Consensus 31 ~eQA~iAE~aGACaVmalervPadi--R~~GgV~RMsDP~mIKei----~~aVsiPVMAk~RiGH--------FVE-AQI 95 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPADI--RAQGGVARMSDPRMIKEI----KNAVSIPVMAKVRIGH--------FVE-AQI 95 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCHhH--HhcCCeeecCCHHHHHHH----HHhccchhhhhhhhhh--------hhH-HHH
Confidence 3457888899977665544445432 334577889999876555 5567899999999973 333 678
Q ss_pred HHHcCCCEEEEc------------------------ccc------c--------ccccCCCCCCC---------------
Q psy2378 159 VSSAGCRTFIVH------------------------ARN------A--------FLKKLNPKQNR--------------- 185 (956)
Q Consensus 159 l~~~G~~~i~vh------------------------~r~------~--------~~~g~~~~~~~--------------- 185 (956)
||..|+|+|.=+ +|. + ..+|-.|..+-
T Consensus 96 lE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir 175 (296)
T KOG1606|consen 96 LEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIR 175 (296)
T ss_pred HHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHH
Confidence 888898888410 110 0 00111010000
Q ss_pred ----CC----------CcCcHHHHHHHHHhCCCceE--EEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 186 ----KI----------PILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 186 ----~~----------~~~~~~~i~~v~~~~~~ipV--i~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
.. -.+.++++.+.++.- .+|| ++.|||.+|.||.-++.- ||||.+|.|.+..++=+++.+.
T Consensus 176 ~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 176 VLKNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred HHHcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHH
Confidence 00 012234455555543 6888 599999999999988877 9999999999998887776654
No 268
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.13 E-value=0.00018 Score=81.46 Aligned_cols=204 Identities=13% Similarity=0.052 Sum_probs=133.2
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc--ccceeEEE-ecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL--NRKIHTIF-IGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~--~~~i~~i~-fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
..-.|+..|.||.-..... .+.-.++++++++......+. +.++..|- .|+|-|.. +.+.+.++++.+.+..++
T Consensus 115 sqvGC~~~C~FC~t~~~~~--~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLl-n~~~v~~~l~~l~~~~g~ 191 (356)
T PRK14455 115 TQVGCRIGCTFCASTLGGL--KRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFD-NYDNVMDFLRIINDDKGL 191 (356)
T ss_pred CCCCCCCCCCcCCCCCCCC--CccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccC-CHHHHHHHHHHHhcccCc
Confidence 3569999999997664321 222335666666654332221 12355554 45588764 456677788877653222
Q ss_pred C-CCceeEEEeCCCCCCHHHHHHHHHcCC-CeEEecCCCCCHHHHHH---hCCCCCHHHHHHHHHHHHh-cCCeeEE-EE
Q psy2378 700 K-KNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNI---LGRTHDSKQAKYAIEIAKQ-YFNNFNL-DL 772 (956)
Q Consensus 700 ~-~~~eitle~np~~it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~---~~R~~~~~~~~~ai~~l~~-~~~~i~~-dl 772 (956)
. ....++++++- +.+.. ..+.+.+. ..+.+.+-+.|++..+. ++|.++.+++.++++.+.+ .+..+.+ .+
T Consensus 192 ~~s~r~itvsT~G--~~~~i-~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~ 268 (356)
T PRK14455 192 AIGARHITVSTSG--IAPKI-YDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYI 268 (356)
T ss_pred ccCCCceEEEecC--chHhH-HHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 1 11356666543 22333 34445443 35789999999999985 6788999999999987765 4666776 67
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+++-..++.+++.+..+++..++ .+|.+-+|.+.++.++ ..|+.+... ...+.|.+.|+.
T Consensus 269 lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky------~~ps~e~l~----~f~~~L~~~gi~ 328 (356)
T PRK14455 269 LLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY------VRTPKEDIF----AFEDTLKKNGVN 328 (356)
T ss_pred EeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC------cCCCHHHHH----HHHHHHHHCCCc
Confidence 77778999999999999999887 6888889888877543 234444322 334556666654
No 269
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.12 E-value=0.00024 Score=80.16 Aligned_cols=201 Identities=10% Similarity=0.023 Sum_probs=127.3
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHH--cc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKL--LL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~--~~ 698 (956)
..+..|+..|.||.-.. .+. .+.-..+++++++...... ..++.+-|.| |.|.. +.+.+.+.++.+.+. ++
T Consensus 108 Ssq~GC~~~C~FC~tg~-~~~-~r~lt~~EI~~qv~~~~~~---~~i~~IvfmG~GEPl~-n~~~vi~~l~~l~~~~gl~ 181 (349)
T PRK14463 108 SSQVGCAMGCAFCLTGT-FRL-TRNLTTAEIVNQVCAVKRD---VPVRNIVFMGMGEPLA-NLDNVIPALQILTDPDGLQ 181 (349)
T ss_pred EecCCcCCCCccCCCCC-CCC-CCCCCHHHHHHHHHHHHhc---CCccEEEEecCCcchh-cHHHHHHHHHHhhcccccC
Confidence 45699999999996432 222 2223346666666543221 2355566655 99874 444444444544321 12
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhc-CCeeEE-EEe
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNNFNL-DLI 773 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~l~~~-~~~i~~-dlI 773 (956)
++ ...++++++- +.+++.+ +....-..+.+.+.|.+++..+.+ +|.++.+++.+++...... +..+.+ .++
T Consensus 182 ~s-~r~itVsTnG--l~~~i~~-l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvL 257 (349)
T PRK14463 182 FS-TRKVTVSTSG--LVPEMEE-LGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVM 257 (349)
T ss_pred cC-CceEEEECCC--chHHHHH-HhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 21 2356666443 3444444 333332356688999999999997 8889999999988766553 556666 677
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
++-..+|.+++.+..+++..++. ++.+-+|.+.+|. .++.|+.+.. ....+.|.+.|..
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~------~~~~ps~e~i----~~f~~~L~~~gi~ 316 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC------DFRSPTQEAI----DRFHKYLLDKHVT 316 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC------CCCCCCHHHH----HHHHHHHHHCCce
Confidence 77789999999999999999864 7888888777653 3345665442 3334556666655
No 270
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.12 E-value=5.3e-05 Score=89.38 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=95.8
Q ss_pred EEEE-ecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCC
Q psy2378 66 IAFQ-VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI 143 (956)
Q Consensus 66 ~~vQ-l~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~ 143 (956)
+.|- ..|..++. .+-++.+.++|+|.|+|++.- -+...+.+.++.+|+.. +.||.++ .
T Consensus 230 L~Vgaavg~~~~~-~~~~~~l~~ag~d~i~id~a~---------------G~s~~~~~~i~~ik~~~~~~~v~aG----~ 289 (495)
T PTZ00314 230 LLVGAAISTRPED-IERAAALIEAGVDVLVVDSSQ---------------GNSIYQIDMIKKLKSNYPHVDIIAG----N 289 (495)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHCCCCEEEEecCC---------------CCchHHHHHHHHHHhhCCCceEEEC----C
Confidence 4443 34667777 555666778899999999741 13445678899999876 5666663 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHH---HHHHHhCCCceEEEecCCCCHHHHH
Q psy2378 144 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV---YNLKKDFPELEIIINGGIKTKKEID 220 (956)
Q Consensus 144 ~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i---~~v~~~~~~ipVi~nGgI~s~~da~ 220 (956)
.. ..+-++.+.++|+|+|.+....+ ....+ +.....+...+..+ .++.+.. ++|||+.|||.++.|+.
T Consensus 290 --V~----t~~~a~~~~~aGad~I~vg~g~G-s~~~t-~~~~~~g~p~~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~ 360 (495)
T PTZ00314 290 --VV----TADQAKNLIDAGADGLRIGMGSG-SICIT-QEVCAVGRPQASAVYHVARYARER-GVPCIADGGIKNSGDIC 360 (495)
T ss_pred --cC----CHHHHHHHHHcCCCEEEECCcCC-ccccc-chhccCCCChHHHHHHHHHHHhhc-CCeEEecCCCCCHHHHH
Confidence 11 23567889999999998742210 00000 00001111234444 3444444 69999999999999999
Q ss_pred HHhhh-cCEEEEccccccCCcch
Q psy2378 221 LHLNY-IDGVMLGREAYKNPFLM 242 (956)
Q Consensus 221 ~~l~~-ad~VmiGR~~l~~P~l~ 242 (956)
++++. ||+||+|+.+.+--..+
T Consensus 361 kAla~GA~~Vm~G~~~a~~~e~~ 383 (495)
T PTZ00314 361 KALALGADCVMLGSLLAGTEEAP 383 (495)
T ss_pred HHHHcCCCEEEECchhccccccC
Confidence 99998 99999999876644333
No 271
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.12 E-value=1.9e-05 Score=80.15 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
++-|++++++|+-+|------|.. .+...|-+-|.||..+.||+.+ +.+||..|.|+|.- . =|+.
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaD--iR~aGGVaRMaDp~~i~eim~a----VsIPVMAKvRIGH~--------~-EA~i 94 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPAD--IRAAGGVARMADPKMIEEIMDA----VSIPVMAKVRIGHF--------V-EAQI 94 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHH--HHhccCccccCCHHHHHHHHHh----cccceeeeeecchh--------H-HHHH
Confidence 456788999998777654445543 2344578889999998888776 67999999999832 2 2788
Q ss_pred HHHcCCCEEEE-----------c-------------ccc------c--------ccccCCCCCCC---------------
Q psy2378 159 VSSAGCRTFIV-----------H-------------ARN------A--------FLKKLNPKQNR--------------- 185 (956)
Q Consensus 159 l~~~G~~~i~v-----------h-------------~r~------~--------~~~g~~~~~~~--------------- 185 (956)
|+..|+|+|.= | +|. + ..+|-.|..+-
T Consensus 95 LealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~ 174 (296)
T COG0214 95 LEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIR 174 (296)
T ss_pred HHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999951 1 110 0 00111110000
Q ss_pred ----------C----CCcCcHHHHHHHHHhCCCceE--EEecCCCCHHHHHHHhhh-cCEEEEccccccC
Q psy2378 186 ----------K----IPILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 186 ----------~----~~~~~~~~i~~v~~~~~~ipV--i~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
+ .-.+.++.+.++++.- .+|| ++.|||.||.||.-++.- ||||.+|.|.+..
T Consensus 175 ~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 175 RLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence 0 0012345566666654 6787 599999999999988887 9999999998763
No 272
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.11 E-value=0.00011 Score=76.16 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc------CCC-----
Q psy2378 76 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------GID----- 144 (956)
Q Consensus 76 ~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~----- 144 (956)
+++.+.|+.+.++|.|+|.| ||+.--+.+.+.++++++|+.+++|+.+--.. +.|
T Consensus 11 e~~~~ia~~v~~~gtDaI~V--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~ 76 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMV--------------GGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFM 76 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEE--------------cCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEE
Confidence 55677777889999999998 44444478889999999999888888764211 000
Q ss_pred ------C----------------------------------------------CCcHHHHHHHHHHHHHcCCCEEEEccc
Q psy2378 145 ------D----------------------------------------------INSYDFVRDFVGTVSSAGCRTFIVHAR 172 (956)
Q Consensus 145 ------~----------------------------------------------~~~~~~~~~~a~~l~~~G~~~i~vh~r 172 (956)
+ ..+.++...++...+..|.+.|++...
T Consensus 77 sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~ 156 (205)
T TIGR01769 77 SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG 156 (205)
T ss_pred EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 0 012344555555555566666655332
Q ss_pred ccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
+ | . ..+.+.+.++++++.+ ++|++..|||+|+++++++++. ||+|.+|
T Consensus 157 s----G---a----~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 157 S----G---A----SYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred C----C---C----CCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 1 1 1 2235789999999988 8999999999999999999877 9999987
No 273
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.08 E-value=5.1e-05 Score=80.62 Aligned_cols=142 Identities=19% Similarity=0.281 Sum_probs=103.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCC----hHHHHHHHHHH-hhccCccEEEEe
Q psy2378 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK----PLLVSDCIKAM-RDSVEIDITVKH 139 (956)
Q Consensus 65 p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~----~~~~~eiv~~v-~~~~~~pv~vKi 139 (956)
.+-+|+.|.=- . +.++.+-++|++.|=|| +.+.++ |+++.++.+.. .+.+-+-+.+|.
T Consensus 76 ~~~v~vGGGIr-~--e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~ 138 (253)
T TIGR02129 76 PGGLQVGGGIN-D--TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRK 138 (253)
T ss_pred CCCEEEeCCcC-H--HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 46689987653 2 55566677899998874 445555 88999999998 565544455551
Q ss_pred ---------ccCCCCCCcHHHHH-HHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceE
Q psy2378 140 ---------RIGIDDINSYDFVR-DFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 207 (956)
Q Consensus 140 ---------r~g~~~~~~~~~~~-~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipV 207 (956)
--||...... ++. ++++.+++. +..|.++ .|.+.++| .|++.++++++.+ ++||
T Consensus 139 ~~~g~~~V~~~GW~~~t~~-~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G-----------~dlel~~~l~~~~-~ipV 204 (253)
T TIGR02129 139 TQDGRWIVAMNKWQTITDL-ELNAETLEELSKY-CDEFLIHAADVEGLCKG-----------IDEELVSKLGEWS-PIPI 204 (253)
T ss_pred cCCCcEEEEECCCcccCCC-ChHHHHHHHHHhh-CCEEEEeeecccCcccc-----------CCHHHHHHHHhhC-CCCE
Confidence 1256553332 355 889999999 9999887 45544444 5999999999986 8999
Q ss_pred EEecCCCCHHHHHHH--hhh-cCEEEEcccccc
Q psy2378 208 IINGGIKTKKEIDLH--LNY-IDGVMLGREAYK 237 (956)
Q Consensus 208 i~nGgI~s~~da~~~--l~~-ad~VmiGR~~l~ 237 (956)
|++|||.|.+|+.++ +.. ..++.+|++++.
T Consensus 205 IASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 205 TYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred EEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 999999999999987 433 677999998753
No 274
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.08 E-value=1.7e-05 Score=84.38 Aligned_cols=145 Identities=17% Similarity=0.336 Sum_probs=99.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhh-ccCccEEEEec--
Q psy2378 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHR-- 140 (956)
Q Consensus 64 ~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir-- 140 (956)
.++-+|+.|.=- .+.+ ++.+-++|++-|=| |+...++|+++.++.+..-+ .+-+-+.+|-.
T Consensus 72 ~~~~i~vgGGIr-s~ed-~~~ll~~Ga~~Vvi--------------gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~ 135 (229)
T PF00977_consen 72 TGIPIQVGGGIR-SIED-AERLLDAGADRVVI--------------GTEALEDPELLEELAERYGSQRIVVSLDARDGYK 135 (229)
T ss_dssp SSSEEEEESSE--SHHH-HHHHHHTT-SEEEE--------------SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEE
T ss_pred CCccEEEeCccC-cHHH-HHHHHHhCCCEEEe--------------ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceE
Confidence 347789987522 2222 23445578886655 56678999999999998865 44334444432
Q ss_pred ---cCCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC
Q psy2378 141 ---IGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 215 (956)
Q Consensus 141 ---~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s 215 (956)
-||..... .+..++++.+++.|+..+.++ .|.+..+| .|++.++++++.+ ++|||++|||.+
T Consensus 136 v~~~gw~~~~~-~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-----------~d~~~~~~l~~~~-~~~viasGGv~~ 202 (229)
T PF00977_consen 136 VATNGWQESSG-IDLEEFAKRLEELGAGEIILTDIDRDGTMQG-----------PDLELLKQLAEAV-NIPVIASGGVRS 202 (229)
T ss_dssp EEETTTTEEEE-EEHHHHHHHHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS--S
T ss_pred EEecCccccCC-cCHHHHHHHHHhcCCcEEEEeeccccCCcCC-----------CCHHHHHHHHHHc-CCCEEEecCCCC
Confidence 14554321 136899999999999999887 34332333 5899999999888 899999999999
Q ss_pred HHHHHHHhhh-cCEEEEcccccc
Q psy2378 216 KKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 216 ~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
.+|..++... +|+|.+|++++.
T Consensus 203 ~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 203 LEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHHHHHHHTTECEEEESHHHHT
T ss_pred HHHHHHHHHCCCcEEEEehHhhC
Confidence 9999999977 999999998764
No 275
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.05 E-value=8e-05 Score=84.10 Aligned_cols=207 Identities=13% Similarity=0.047 Sum_probs=137.1
Q ss_pred CCCcceeeeeeecccccCCcch-HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC-
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE-KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK- 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~-~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~- 701 (956)
+-.|...|.||.+....+.... .-..+.+.++++...+ .+++++.|.+|.-.-++..+...+++.+++.++.-.
T Consensus 66 TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~----~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i 141 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVK----RGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHI 141 (370)
T ss_pred chhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHH----cCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhh
Confidence 5689999999998765433211 1225677777766544 347788887777666676788999999998653111
Q ss_pred ----CceeEEEeCCCCCC-HHHHHHHHHcCCCeEEecC-CCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 702 ----NISITLEANPSTFE-IEKFHSYSIIGINRLSIGI-QSFNNKYLNILG-RTHDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 702 ----~~eitle~np~~it-~e~L~~L~~~Gv~risiGv-QS~~d~~L~~~~-R~~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
..++..-++....+ +|.++.|+++|+..+-.|- +=+++++.+.+. .+.+.+.-.+.++.+++.|+..+..++|
T Consensus 142 ~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 142 HALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred cccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 11233233445444 5669999999998766554 556666666554 4578999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccC-----CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Q psy2378 775 ALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 837 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~-----~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l 837 (956)
|. +||.++....+..+.++. +..+.+-.|.|.+++ ........++..+....+..++-+|
T Consensus 222 Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~--~~~~~~~~~~~~~~l~~iAiaRi~l 286 (370)
T COG1060 222 GH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP--LPAEVVPEASLEQDLKAIALARIFL 286 (370)
T ss_pred Ee-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCC--ccccCCCCCCHHHHHHHHHHHHHHc
Confidence 97 788999999988887653 333344445555555 2222333455555555555444444
No 276
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.05 E-value=0.00012 Score=79.83 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=106.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEe
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH 139 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKi 139 (956)
+.-|+...+...+++++.+.++.+.+.||..+-++.| .+++.-.+++++||+.++ .++.+..
T Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3456667777778999999999888999999999864 135667789999999884 4565555
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
..+|+ .++++++++.|++.|+++|.-- .++.+++..+++++.+ ++||++.+.+.+++++
T Consensus 137 n~~~~----~~~a~~~~~~l~~~~i~~iEeP----------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~~ 195 (265)
T cd03315 137 NRGWT----PKQAIRALRALEDLGLDYVEQP----------------LPADDLEGRAALARAT-DTPIMADESAFTPHDA 195 (265)
T ss_pred CCCcC----HHHHHHHHHHHHhcCCCEEECC----------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence 55665 3568999999999999998431 1235789999999987 7999999999999999
Q ss_pred HHHhhh--cCEEEE
Q psy2378 220 DLHLNY--IDGVML 231 (956)
Q Consensus 220 ~~~l~~--ad~Vmi 231 (956)
.++++. +|+|++
T Consensus 196 ~~~i~~~~~d~v~~ 209 (265)
T cd03315 196 FRELALGAADAVNI 209 (265)
T ss_pred HHHHHhCCCCEEEE
Confidence 999976 999987
No 277
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.02 E-value=0.00017 Score=81.97 Aligned_cols=176 Identities=15% Similarity=0.035 Sum_probs=127.1
Q ss_pred cceeeeeeecccccCC-c-chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCce
Q psy2378 627 KVIINEAIELVKSFGN-I-DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 704 (956)
Q Consensus 627 c~~~Ce~C~l~k~~~~-~-~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~e 704 (956)
|+..|.||-....... . -+..-++..++.+. ......+ -++.|-||-|++......+.+.....+..+ .....
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~---~~~~~~~-v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~-~~~i~ 92 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYI---AASNGDK-VTFTWQGGEPLLAGLDFYRKAVALQQKYAN-GKTIS 92 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHH---hhCCCCe-eEEEEECCccccchHHHHHHHHHHHHHHhc-CCeeE
Confidence 9999999976543321 1 12222333333322 2222223 357788899999888766666555444433 44456
Q ss_pred eEEEeCCCCCCHHHHHHHHHcCCCeE--Ee-cCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 705 ITLEANPSTFEIEKFHSYSIIGINRL--SI-GIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 705 itle~np~~it~e~L~~L~~~Gv~ri--si-GvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
.++.+|-..+++++.+.+++.++ .| || |.+..+|..+...+=.-|.+.+.++++.|+++...+++-.. +..|+.
T Consensus 93 ~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~v--v~~~n~ 169 (378)
T COG0641 93 NALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTV--VNRQNV 169 (378)
T ss_pred EEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEE--EchhHh
Confidence 67889999999999999999998 54 44 66888888877766667899999999999998777777555 789999
Q ss_pred HHHHHHHHHHHccCCCeEEEEeeeccCCc
Q psy2378 782 SELMLDLNYAIQYSPPHLSLYSLTIEPNT 810 (956)
Q Consensus 782 e~~~~tl~~~~~l~~~~i~~y~l~~~pgT 810 (956)
+...+.++++.+.+..++++.++....++
T Consensus 170 ~~~~ei~~~l~~~g~~~i~fip~~~~~~~ 198 (378)
T COG0641 170 LHPEEIYHFLKSEGSKFIQFIPLVESDNR 198 (378)
T ss_pred hCHHHHHHHHHHcccceEEEEecccCCCC
Confidence 99999999999999999999777665544
No 278
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.02 E-value=0.00019 Score=83.37 Aligned_cols=174 Identities=9% Similarity=0.003 Sum_probs=122.6
Q ss_pred CCcceeeeeeecccccC-------CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 625 PYKVIINEAIELVKSFG-------NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 625 P~c~~~Ce~C~l~k~~~-------~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
..|+..|.||-...... ..-....+..+++++... ...+.-.+.|.||-|++.+...+.++++.+++..
T Consensus 22 ~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~----~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~ 97 (412)
T PRK13745 22 AVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINS----QTMPQVLFTWHGGETLMRPLSFYKKALELQKKYA 97 (412)
T ss_pred CCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHc----CCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHc
Confidence 57999999997532111 111333345555554321 1112344677889999887767777777665542
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC----CCCHHHHHHHHHHHHhcCCeeEEEEe
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR----THDSKQAKYAIEIAKQYFNNFNLDLI 773 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R----~~~~~~~~~ai~~l~~~~~~i~~dlI 773 (956)
......+++.+|-..+++++++.+++.++ .|++.+.+. +++....++ ..+.+++.++++.+++.++.+++-..
T Consensus 98 -~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i~~v 174 (412)
T PRK13745 98 -RGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAV 174 (412)
T ss_pred -CCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 22335778888998999999999999997 888888875 455554443 24889999999999998887776555
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeecc
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE 807 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~ 807 (956)
+. .++.+...+.++++.+++++.+.+.++.+.
T Consensus 175 v~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 175 VN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred Ec--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 54 566778888999999999999998887763
No 279
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.02 E-value=1.6e-05 Score=84.91 Aligned_cols=209 Identities=14% Similarity=0.082 Sum_probs=138.0
Q ss_pred CCCcceeeeeeecccccCCc----------chHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNI----------DEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 693 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~----------~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i 693 (956)
.+.|.+.|.||..++..... +...-++.+++.+......+..--+.+|... ..++ .+..+++.+
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p----~~~~--d~~~i~~~~ 111 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYP----RALN--DLKLILERL 111 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccc----cccc--hhhhhhhhh
Confidence 48999999999876532211 1112234444333322122222224444433 2222 234444444
Q ss_pred HHHcccCCCceeEEE--eCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC----CCCHHHHHHHHHHHHhc-C-
Q psy2378 694 KKLLLFKKNISITLE--ANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR----THDSKQAKYAIEIAKQY-F- 765 (956)
Q Consensus 694 ~~~~~~~~~~eitle--~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R----~~~~~~~~~ai~~l~~~-~- 765 (956)
.- ....++++- +++... .+.+..++++|...+++++.-.+.++++.+.| .|+.+...+.++.+-+. +
T Consensus 112 ~~----~~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k 186 (339)
T COG2516 112 HI----RLGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGK 186 (339)
T ss_pred hh----ccCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc
Confidence 32 223466655 455544 78899999999999999999999999998854 47799999999888886 4
Q ss_pred CeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhH
Q psy2378 766 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNY 845 (956)
Q Consensus 766 ~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~y 845 (956)
-++++++|+| -|+|..+|-+++..+...+. .+++|.++|..||.+.+.. .+.. +.+.....+. +|...|-..+
T Consensus 187 ~rv~ihliVg-lGesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~---~~pv-e~Yrk~q~a~-yli~~G~v~~ 259 (339)
T COG2516 187 GRVGIHLIVG-LGESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRK---PPPV-ERYRKIQVAR-YLIGNGEVDL 259 (339)
T ss_pred CCcceeEEec-cCCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCC---CCcH-HHHHHHHHHH-HHHhcCccch
Confidence 5899999999 78999999999999998875 5899999999999987653 2333 3333333333 7887777765
Q ss_pred HHHhh
Q psy2378 846 EISAY 850 (956)
Q Consensus 846 eis~f 850 (956)
+.-.|
T Consensus 260 ~~~~f 264 (339)
T COG2516 260 EDFEF 264 (339)
T ss_pred hhccc
Confidence 54443
No 280
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.01 E-value=6e-05 Score=80.95 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcc------cccccC--ChHHHHHHHHHHhhccCccEEE--EeccC
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILMT--KPLLVSDCIKAMRDSVEIDITV--KHRIG 142 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~------G~~l~~--~~~~~~eiv~~v~~~~~~pv~v--Kir~g 142 (956)
.+.+.+.+.++.++++|+|.|||++ |.+.-.-||- --+|.+ +.+...++++.+|+.+++|+.+ +..+-
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~ 88 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI 88 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH
Confidence 3567999999999999999999997 6654444430 001111 2458889999999888888654 43321
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEE---c-----------------------cccc------------------cccc
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIV---H-----------------------ARNA------------------FLKK 178 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~v---h-----------------------~r~~------------------~~~g 178 (956)
+..+ ...+++.+.++|++.+++ | .-|. ...|
T Consensus 89 ~~~G-----~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g 163 (242)
T cd04724 89 LQYG-----LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred HHhC-----HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence 1100 134555566666666655 1 1110 0011
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccc
Q psy2378 179 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 236 (956)
Q Consensus 179 ~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l 236 (956)
.+|... ...+...+.++++++.. ++||+.-|||++++++.++.+.||+|.+|.+++
T Consensus 164 ~tG~~~-~~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~~~ADgvVvGSaiv 219 (242)
T cd04724 164 VTGART-ELPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVAKYADGVIVGSALV 219 (242)
T ss_pred CCCCcc-CCChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHHccCCEEEECHHHH
Confidence 111111 01123357788998875 899999999999999999887799999998654
No 281
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.00 E-value=0.0001 Score=77.45 Aligned_cols=157 Identities=14% Similarity=0.169 Sum_probs=100.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEEec-CCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEE--EEeccCC
Q psy2378 67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRIGI 143 (956)
Q Consensus 67 ~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN-~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~--vKir~g~ 143 (956)
.++|...|++.+.+.++.+.++|+|.|++- +-+|.-. +...-.++++++++..+.|+. ++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~------------~~~~~~~~v~~i~~~~~~~v~v~lm~~~-- 67 (210)
T TIGR01163 2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP------------NLTFGPPVLEALRKYTDLPIDVHLMVEN-- 67 (210)
T ss_pred cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC------------CcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence 467888999999999999999999999996 3233211 222445677777766666753 44431
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------cc--cc------CCCC---------------------CCCC
Q psy2378 144 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FL--KK------LNPK---------------------QNRK 186 (956)
Q Consensus 144 ~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------~~--~g------~~~~---------------------~~~~ 186 (956)
..++++.+.++|+|.+++|+... .. .| .++. ....
T Consensus 68 --------~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 139 (210)
T TIGR01163 68 --------PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGF 139 (210)
T ss_pred --------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCC
Confidence 13557777788888888875420 00 00 0000 0000
Q ss_pred C-CcCcH---HHHHHHHHhC----CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 187 I-PILKY---NFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 187 ~-~~~~~---~~i~~v~~~~----~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
. ...+| +.+.++++.. +++|+.+.|||+ ++.+.++++. +|++.+|+++...|+....++
T Consensus 140 tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 140 GGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 1 12233 3444455433 237999999995 8999999887 999999999998887655544
No 282
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00022 Score=71.67 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCc-HHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDFV 152 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~-~~~~ 152 (956)
+++-+...|+.+.+.|+-+|-+|. + +=++++++.+++|+.=-+.-.+++.+. +--+
T Consensus 31 ~~~iv~~mA~Aa~~gGAvgiR~~g----------------------v-~dIkai~~~v~vPIIGIiKrd~~~s~v~ITpt 87 (229)
T COG3010 31 SPEIVAAMALAAEQGGAVGIRIEG----------------------V-EDIKAIRAVVDVPIIGIIKRDYPDSPVRITPT 87 (229)
T ss_pred chhHHHHHHHHHHhCCcceEeecc----------------------h-hhHHHHHhhCCCCeEEEEecCCCCCCceeccc
Confidence 467788888888999999999982 1 225778888888886555555544321 0012
Q ss_pred HHHHHHHHHcCCCEEEEcccc--c------------------------------------------ccccCCCCCCCCCC
Q psy2378 153 RDFVGTVSSAGCRTFIVHARN--A------------------------------------------FLKKLNPKQNRKIP 188 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~r~--~------------------------------------------~~~g~~~~~~~~~~ 188 (956)
.+=++.|.++|++-|.+.+.. + .+.||++.... ..
T Consensus 88 lkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~-~~ 166 (229)
T COG3010 88 LKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEK-PT 166 (229)
T ss_pred HHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCC-CC
Confidence 344567778888887764211 0 24566553332 22
Q ss_pred cCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 189 ~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
..|+..++++.+ . +++||+-|+++||+.|.+.++. |++|.+|.+ +-+|.
T Consensus 167 ~pDf~lvk~l~~-~-~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsA-ITRp~ 216 (229)
T COG3010 167 EPDFQLVKQLSD-A-GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSA-ITRPE 216 (229)
T ss_pred CCcHHHHHHHHh-C-CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcc-cCCHH
Confidence 358999999998 3 7999999999999999999998 999999964 55554
No 283
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.98 E-value=0.00013 Score=83.53 Aligned_cols=205 Identities=8% Similarity=0.039 Sum_probs=112.1
Q ss_pred CceEEccCc-CcCCHHHHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEecCCC--HHHHHHHHHHHHH
Q psy2378 11 RKISIAPMM-NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNE--PKKLAKSAKIIQK 87 (956)
Q Consensus 11 ~~i~lAPM~-~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~g~~--~~~~~~aA~~~~~ 87 (956)
-+|+.+||+ |+|+..+---+-..|+.+.+=+...+.+.+-..-.++-...+.+.|+.|.|+.+. |+.-.+..+.+.+
T Consensus 19 yPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~ 98 (444)
T TIGR02814 19 YAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLR 98 (444)
T ss_pred CcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHH
Confidence 399999999 7999888765566676555544444444442111111111222234999998653 3322344456677
Q ss_pred cCCCEEEecCC---CCcceeeeCcccc------------cc-c--CChHHHHH--------HHHHHhhccCccEEEEecc
Q psy2378 88 WGYDEINLNCG---CPSNRVQNGFFGA------------IL-M--TKPLLVSD--------CIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 88 ~G~d~IeiN~g---CP~~~~~~~~~G~------------~l-~--~~~~~~~e--------iv~~v~~~~~~pv~vKir~ 141 (956)
.|+..|+.-.+ .|.- ++-...|. .+ . .+++.+.. +|+.+++. |+-
T Consensus 99 ~~V~~veasa~~~~~p~~-v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~-G~i------- 169 (444)
T TIGR02814 99 HGVRIVEASAFMQLTPAL-VRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAE-GRI------- 169 (444)
T ss_pred cCCCEEEeccccCCCcch-hhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHc-CCC-------
Confidence 89999988533 3321 11011110 00 0 02222211 22222211 100
Q ss_pred CCCCCCcHHHHHHHHHHHHHcC-CCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-------CCceEEEecCC
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------PELEIIINGGI 213 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G-~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-------~~ipVi~nGgI 213 (956)
+.+=|..+++.| +|.|++. .. ..|+++.. ....-+..+.++++.+ .+|||++.|||
T Consensus 170 ----------t~eEA~~a~~~g~aD~Ivve-~E--AGGHtg~~---~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI 233 (444)
T TIGR02814 170 ----------TREEAELARRVPVADDICVE-AD--SGGHTDNR---PLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGI 233 (444)
T ss_pred ----------CHHHHHHHHhCCCCcEEEEe-cc--CCCCCCCC---cHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCC
Confidence 112245667777 5999885 22 33443211 1111233444444443 14899999999
Q ss_pred CCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 214 KTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 214 ~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
.|++++..++.- ||+|++|..++.-+.
T Consensus 234 ~t~~~vaAAlaLGAdgV~~GT~flat~E 261 (444)
T TIGR02814 234 GTPEAAAAAFMLGADFIVTGSVNQCTVE 261 (444)
T ss_pred CCHHHHHHHHHcCCcEEEeccHHHhCcc
Confidence 999999999988 999999999887654
No 284
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.97 E-value=0.00017 Score=77.88 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=104.2
Q ss_pred CEEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCc------cccccc--CChHHHHHHHHHHhhc-cCc
Q psy2378 65 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMRDS-VEI 133 (956)
Q Consensus 65 p~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~------~G~~l~--~~~~~~~eiv~~v~~~-~~~ 133 (956)
.++.=|... +.+...+.++.+.+.|+|.|||-+ |.+.-..|| +--+|. -+.+.+.++++++|+. .++
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGV--PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 355555443 667899999999999999999943 443333332 111221 1467888999999976 788
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc--------------------------ccc-------------
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA------------- 174 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~--------------------------r~~------------- 174 (956)
|+..=+-.+. --. .-..++++.+.++|++.+.+|- -|.
T Consensus 89 plv~m~Y~Np--i~~-~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g 165 (256)
T TIGR00262 89 PIGLLTYYNL--IFR-KGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG 165 (256)
T ss_pred CEEEEEeccH--Hhh-hhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence 8653221110 000 0123445555555555555431 110
Q ss_pred -----ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 175 -----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 175 -----~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
...|++|..... .+...+.++++++.. +.||+.-|||+|++++.++.+. ||+|.+|++++
T Consensus 166 fiy~vs~~G~TG~~~~~-~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 166 FVYLVSRAGVTGARNRA-ASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred CEEEEECCCCCCCcccC-ChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 112444432222 233578899999986 7899999999999999999998 99999999874
No 285
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.97 E-value=0.00035 Score=75.90 Aligned_cols=154 Identities=11% Similarity=0.154 Sum_probs=99.0
Q ss_pred CCCCEEEEecCCCHH-------HHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc---
Q psy2378 62 EEHPIAFQVGDNEPK-------KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--- 131 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~-------~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--- 131 (956)
.+.++++.+.+..|. .+...++.+.+.|+|+|++-.- .|. ..+.+.+ +.++++++.+
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 356678888443321 3555677788899999998431 122 1123333 5566666554
Q ss_pred CccEEEEecc-CCC-CCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEE
Q psy2378 132 EIDITVKHRI-GID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 209 (956)
Q Consensus 132 ~~pv~vKir~-g~~-~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~ 209 (956)
+.|+.+..-. |.. ...+.+...+.++...++|+|+|-+.. +.+.+.++++.+.. .+||.+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~-----------------~~~~~~l~~~~~~~-~iPVva 197 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPY-----------------TGDIDSFRDVVKGC-PAPVVV 197 (258)
T ss_pred CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccC-----------------CCCHHHHHHHHHhC-CCcEEE
Confidence 7888774321 110 011123344557888899999998631 13678888888876 699999
Q ss_pred ecCCC--CHHHHHHHh----hh-cCEEEEccccccCCcchHHHH
Q psy2378 210 NGGIK--TKKEIDLHL----NY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 210 nGgI~--s~~da~~~l----~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
.|||+ |.+++.+.+ +. |+|+.+||.++..|+....++
T Consensus 198 ~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~ 241 (258)
T TIGR01949 198 AGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITK 241 (258)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHH
Confidence 99999 666665555 55 999999999999888544443
No 286
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.96 E-value=2.8e-05 Score=83.13 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++++.+++.|++.|+++-.... + ...+.+++.++++++.+ ++||++.|||.+.++++++++. ||.|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~--~-------~~~~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDAS--K-------RGREPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKV 100 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCc--c-------cCCCCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3678999999999999999866531 1 11246899999999987 7999999999999999998877 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
++|++++.||.++.++.+.+
T Consensus 101 ilg~~~l~~~~~~~~~~~~~ 120 (232)
T TIGR03572 101 SINTAALENPDLIEEAARRF 120 (232)
T ss_pred EEChhHhcCHHHHHHHHHHc
Confidence 99999999999999988754
No 287
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=97.95 E-value=0.00017 Score=80.65 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=125.1
Q ss_pred CCCCcceeeeeeecccccCC--cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 623 KIPYKVIINEAIELVKSFGN--IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~--~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
-+..|+..|.||.-...... ......++.+++.++.. ..+..|.|.||.|...+...+..+++.+... +
T Consensus 102 ~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~------~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i-~-- 172 (321)
T TIGR03821 102 VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQH------PEINEVILSGGDPLMAKDHRLDWLLNLLEQI-P-- 172 (321)
T ss_pred eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc------CCCCEEEEeCcccccCCchHHHHHHHHHHhC-C--
Confidence 46889999999964221111 11233445555555432 2467788999999988877788888777653 1
Q ss_pred CCceeEEE-----eCCCCCCHHHHHHHHHcCCCeE-EecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 701 KNISITLE-----ANPSTFEIEKFHSYSIIGINRL-SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 701 ~~~eitle-----~np~~it~e~L~~L~~~Gv~ri-siGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
....+.+. +.|..+++++++.|++.|+..+ .+.+.+-. ++ .+.+.++++.+++.|+.+.....+
T Consensus 173 ~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~Gi~v~~qtvl 242 (321)
T TIGR03821 173 HLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKLRNAGITLLNQSVL 242 (321)
T ss_pred CCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHHHHcCCEEEeccee
Confidence 11233333 3566789999999999997665 23554432 22 145888999999998766544333
Q ss_pred cCC--CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2378 775 ALP--NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 838 (956)
Q Consensus 775 GlP--gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 838 (956)
++ .++.+++.+..+.+.++++....+|.+.+..|+.-+. .+.++..+.+..+...+.
T Consensus 243 -lkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~------v~~~~~~~i~~~l~~~~s 301 (321)
T TIGR03821 243 -LRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFD------VDDERARALMAELLARLP 301 (321)
T ss_pred -eCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCccccc------CCHHHHHHHHHHHHHhCC
Confidence 24 3789999999999999999999999998888865321 234454555555544443
No 288
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.94 E-value=0.00019 Score=84.15 Aligned_cols=145 Identities=18% Similarity=0.235 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHH
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD 150 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 150 (956)
+-.++.+.++. .+.++|+|.|.|++.-+ +...+.+.++.+|+.. +.||.++--.
T Consensus 220 ~~~~~~~~r~~-~L~~aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v~--------- 274 (450)
T TIGR01302 220 GTREFDKERAE-ALVKAGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNVA--------- 274 (450)
T ss_pred cCchhHHHHHH-HHHHhCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeCC---------
Confidence 44556666655 56678999999986431 2346788999999884 7888884222
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHH---hCCCceEEEecCCCCHHHHHHHhhh-c
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLHLNY-I 226 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~---~~~~ipVi~nGgI~s~~da~~~l~~-a 226 (956)
+.+-++.+.++|+|+|.|.-..+ .-..+ +.....+...+..+.++++ .. ++|||+.|||.++.|+.++|+. |
T Consensus 275 -t~~~a~~l~~aGad~i~vg~g~G-~~~~t-~~~~~~g~p~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla~GA 350 (450)
T TIGR01302 275 -TAEQAKALIDAGADGLRVGIGPG-SICTT-RIVAGVGVPQITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALAAGA 350 (450)
T ss_pred -CHHHHHHHHHhCCCEEEECCCCC-cCCcc-ceecCCCccHHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCC
Confidence 23568889999999998752110 00000 0000112234455555543 34 7999999999999999999998 9
Q ss_pred CEEEEccccccCCcchHHH
Q psy2378 227 DGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 227 d~VmiGR~~l~~P~l~~~i 245 (956)
|+||+|+.+.+-.+.+.++
T Consensus 351 ~~V~~G~~~a~~~e~pg~~ 369 (450)
T TIGR01302 351 DAVMLGSLLAGTTESPGEY 369 (450)
T ss_pred CEEEECchhhcCCcCCCce
Confidence 9999999887766666543
No 289
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.93 E-value=0.00072 Score=76.51 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=125.3
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHcccC-
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLLLFK- 700 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~~~~- 700 (956)
.+..|+..|.||.-... +. .+.-..+++++++....... ...+..|.|.| |-|.. +.+.+.+.++.+.+.....
T Consensus 107 sq~GC~l~C~fC~tg~~-g~-~r~lt~~EI~~qv~~~~~~~-~~~v~~Vvf~GmGEPLl-n~d~v~~~i~~l~~~~~~~~ 182 (343)
T PRK14469 107 TQVGCPVKCIFCATGQS-GF-VRNLTTGEIVSQILAMEKEE-KKKVGNVVYMGMGEPLL-NYENVIKSIKILNHKKMKNI 182 (343)
T ss_pred ecCCCCCcCcCCCCCCC-Cc-cccCCHHHHHHHHHHHHHhc-cCCcCeEEEEccChhhh-hHHHHHHHHHHHhchhcccC
Confidence 45899999999964331 11 11112455666654322211 23467788877 99764 4445556666654321111
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCC-eEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhc-CCeeEEEE-ee
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNNFNLDL-IY 774 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~-risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~l~~~-~~~i~~dl-I~ 774 (956)
....+++.++-. .+.++.|.+.|.+ ++.+.+.+.+++..+.+ +|.++.+++.++++...+. +..+.+-+ ++
T Consensus 183 g~~~itisTnG~---~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI 259 (343)
T PRK14469 183 GIRRITISTVGI---PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILI 259 (343)
T ss_pred CCCeEEEECCCC---hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEE
Confidence 113677655542 5677888888987 79999999999987764 6788999999998866553 55555432 33
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
.-..++.+++++..+++..++ .+|.+-+|.+.++ ..+.|+.+. .....+.|.+.|..
T Consensus 260 ~g~NDs~ed~~~La~llk~~~-~~VnLIpynp~~~-------~~~~ps~e~----l~~f~~~l~~~gi~ 316 (343)
T PRK14469 260 KGFNDEIEDAKKLAELLKGLK-VFVNLIPVNPTVP-------GLEKPSRER----IERFKEILLKNGIE 316 (343)
T ss_pred CCCCCCHHHHHHHHHHHhccC-cEEEEEecCCCCc-------cCCCCCHHH----HHHHHHHHHHCCCe
Confidence 324577899999999998875 4677777776554 233455433 22334556665543
No 290
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00016 Score=73.95 Aligned_cols=136 Identities=11% Similarity=0.205 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEecc---------
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI--------- 141 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~--------- 141 (956)
|.......++- .+-.+|+|-|-||- +-+.||+++.++-+..-..+ -+.+..|-+.
T Consensus 80 GGGI~s~eD~~-~ll~aGADKVSINs--------------aAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v 144 (256)
T COG0107 80 GGGIRSVEDAR-KLLRAGADKVSINS--------------AAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEV 144 (256)
T ss_pred cCCcCCHHHHH-HHHHcCCCeeeeCh--------------hHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEE
Confidence 43333333333 34567999999993 34678999999888875554 3445555542
Q ss_pred ----CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHH
Q psy2378 142 ----GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 217 (956)
Q Consensus 142 ----g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~ 217 (956)
|-.+ +--+++++++..++.|+--|-+..-.+ .| .....|.+.++.+++.+ +||||++||.-+++
T Consensus 145 ~~~gGr~~--t~~d~~~Wa~~~e~~GAGEIlLtsmD~--DG-------tk~GyDl~l~~~v~~~v-~iPvIASGGaG~~e 212 (256)
T COG0107 145 FTHGGRED--TGLDAVEWAKEVEELGAGEILLTSMDR--DG-------TKAGYDLELTRAVREAV-NIPVIASGGAGKPE 212 (256)
T ss_pred EecCCCcC--CCcCHHHHHHHHHHcCCceEEEeeecc--cc-------cccCcCHHHHHHHHHhC-CCCEEecCCCCcHH
Confidence 1111 112578999999999999998875431 11 11236999999999998 89999999999999
Q ss_pred HHHHHhhh--cCEEEEccc
Q psy2378 218 EIDLHLNY--IDGVMLGRE 234 (956)
Q Consensus 218 da~~~l~~--ad~VmiGR~ 234 (956)
+..+.+.. ||++..+.=
T Consensus 213 hf~eaf~~~~adAaLAAsi 231 (256)
T COG0107 213 HFVEAFTEGKADAALAASI 231 (256)
T ss_pred HHHHHHHhcCccHHHhhhh
Confidence 99999876 888766553
No 291
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.92 E-value=4.2e-05 Score=81.79 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++++.+++.|++.+++..-.+..+| .+.+++.++++++.+ ++||++.|||.|.+|++++++. ||.|
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g---------~~~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~v 100 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG---------KPVNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRV 100 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEE
Confidence 4678999999999999999865432222 136899999999987 7999999999999999999988 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
++|+.++.+|.++.++.+.+
T Consensus 101 ilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 101 IIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred EECchHHhCHHHHHHHHHHh
Confidence 99999999999988887754
No 292
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.91 E-value=0.00073 Score=76.52 Aligned_cols=173 Identities=15% Similarity=0.070 Sum_probs=126.1
Q ss_pred CCCCcceeeeeeecccccC--CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 623 KIPYKVIINEAIELVKSFG--NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~--~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
-.+.|+..|.+|....... ..-.......++.++... + . +..+.++||.|... ..+..+++.+.+.
T Consensus 25 ~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~----g-~-~~~v~~~gGEPll~--~d~~ei~~~~~~~---- 92 (347)
T COG0535 25 LTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAEL----G-E-IPVVIFTGGEPLLR--PDLLEIVEYARKK---- 92 (347)
T ss_pred eccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHc----C-C-eeEEEEeCCCcccc--ccHHHHHHHHhhc----
Confidence 3579999999996544322 111222222233333322 1 1 56789999999886 3455566666543
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCC
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKY-LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQ 779 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~-L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgq 779 (956)
....+++.+|-..++++.++.++++|+..+.+.+++.+++. ...-++....+...++++.+++.++. +-+.+.++..
T Consensus 93 ~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~--~~~~~~v~~~ 170 (347)
T COG0535 93 GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL--VVINTTVTKI 170 (347)
T ss_pred CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCe--eeEEEEEecC
Confidence 23466777776557889999999999999999999999999 66667788889999999999988775 4455556788
Q ss_pred CHHHHHHHHHHHHccCCCeEEEEeeeccCC
Q psy2378 780 TLSELMLDLNYAIQYSPPHLSLYSLTIEPN 809 (956)
Q Consensus 780 T~e~~~~tl~~~~~l~~~~i~~y~l~~~pg 809 (956)
+.+++.+..+.+.+++.....++.+.+...
T Consensus 171 n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 171 NYDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 999999999999999998888888887643
No 293
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.91 E-value=0.00018 Score=75.57 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=99.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHcCCCEEEecC-CCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCC
Q psy2378 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 143 (956)
Q Consensus 65 p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~-gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 143 (956)
++.++|...|+..+.+.++.+.++|++.|++-+ ..|. ..+..+-.++++.+++.++.|+.|.+-..
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~------------~~~~~~~~~~~~~i~~~~~~~~~v~l~~~- 67 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHF------------VPNLTFGPPVVKALRKHTDLPLDVHLMVE- 67 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCC------------CCccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence 467889999999999999999999999999942 1111 01111223556666655545554443332
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------c-----------------c-c--cC---CCC-CCC
Q psy2378 144 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------F-----------------L-K--KL---NPK-QNR 185 (956)
Q Consensus 144 ~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------~-----------------~-~--g~---~~~-~~~ 185 (956)
+ ..++++.+.++|+|.+++|+... . + . .+ .+. ...
T Consensus 68 -d------~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~ 140 (211)
T cd00429 68 -N------PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGF 140 (211)
T ss_pred -C------HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 12456666678888887775310 0 0 0 00 000 000
Q ss_pred CCCcCcH---HHHHHHHHhCC----CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 186 KIPILKY---NFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 186 ~~~~~~~---~~i~~v~~~~~----~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
.....+| +.+.++++..+ ++||++.|||+ ++++.++++. +|+|.+|+++...++....++
T Consensus 141 tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 141 GGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred CCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHH
Confidence 0112333 34555555442 48999999997 5999999977 999999999998888665544
No 294
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.90 E-value=0.00018 Score=76.57 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=98.0
Q ss_pred EEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHH-hhccCccEEEE----ec
Q psy2378 68 FQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM-RDSVEIDITVK----HR 140 (956)
Q Consensus 68 vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v-~~~~~~pv~vK----ir 140 (956)
+|+.|. +.++.. .+-++|++-|=| |+...++|+++.++.+.. .+.+-+-+.+| +.
T Consensus 76 v~vGGGIrs~e~~~----~~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~ 137 (232)
T PRK13586 76 IQVGGGIRDIEKAK----RLLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVL 137 (232)
T ss_pred EEEeCCcCCHHHHH----HHHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEE
Confidence 899764 555443 334568888754 566788999999999888 44432223331 11
Q ss_pred c-CCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHH
Q psy2378 141 I-GIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 217 (956)
Q Consensus 141 ~-g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~ 217 (956)
. ||.... .+..++++.+++.|+..+.++ .|.+..+| .|++.++++++. + .|+|++|||.|.+
T Consensus 138 ~~gw~~~~--~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G-----------~d~el~~~~~~~-~-~~viasGGv~s~~ 202 (232)
T PRK13586 138 IRGWKEKS--MEVIDGIKKVNELELLGIIFTYISNEGTTKG-----------IDYNVKDYARLI-R-GLKEYAGGVSSDA 202 (232)
T ss_pred ccCCeeCC--CCHHHHHHHHHhcCCCEEEEecccccccCcC-----------cCHHHHHHHHhC-C-CCEEEECCCCCHH
Confidence 1 565422 246799999999999888887 34432333 589999998875 3 4699999999999
Q ss_pred HHHHHhhh-cCEEEEccccccC
Q psy2378 218 EIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 218 da~~~l~~-ad~VmiGR~~l~~ 238 (956)
|..++.+. +|+|.+|++++.+
T Consensus 203 Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 203 DLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred HHHHHHHCCCCEEEEehhhhcC
Confidence 99999866 9999999998743
No 295
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.89 E-value=0.00011 Score=83.08 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 153 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~ 153 (956)
++.++.+.++.+.++|+|.|-++..- +...|++.- .++..+.++++. .++||.++ +. . ..
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt-----~~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG---~V---~----t~ 198 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTV-----VSAEHVSKE-GEPLNLKEFIYE----LDVPVIVG---GC---V----TY 198 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCCc-CCHHHHHHHHHH----CCCCEEEe---CC---C----CH
Confidence 45667788888889999999998631 122233221 145554444443 47898762 11 1 13
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHh-------C--CCceEEEecCCCCHHHHHHHhh
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-------F--PELEIIINGGIKTKKEIDLHLN 224 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~-------~--~~ipVi~nGgI~s~~da~~~l~ 224 (956)
+-++.+.++|+|+|.+ ++.... +.+.......+..-+..+.++.+. . .++|||+.|||.+..|+.++|.
T Consensus 199 e~A~~l~~aGAD~V~V-G~G~Gs-~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla 276 (368)
T PRK08649 199 TTALHLMRTGAAGVLV-GIGPGA-ACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA 276 (368)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCc-CCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH
Confidence 5577777899999977 443110 111110000111233444444321 1 1489999999999999999999
Q ss_pred h-cCEEEEccccccCCcchHHH
Q psy2378 225 Y-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 225 ~-ad~VmiGR~~l~~P~l~~~i 245 (956)
. ||+||+|+.+.+-..-..+.
T Consensus 277 lGAd~Vm~Gs~fa~t~Espg~~ 298 (368)
T PRK08649 277 CGADAVMLGSPLARAAEAPGRG 298 (368)
T ss_pred cCCCeecccchhcccccCCCcc
Confidence 8 99999999998866555443
No 296
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=97.88 E-value=0.0011 Score=76.26 Aligned_cols=169 Identities=15% Similarity=0.088 Sum_probs=118.4
Q ss_pred CCcceeeeeeecccccC-------CcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 625 PYKVIINEAIELVKSFG-------NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 625 P~c~~~Ce~C~l~k~~~-------~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
-.|+..|.||....... .......++.+++.+.... .....|.|.||-|++.+.+.+.++++.+++.
T Consensus 13 ~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~-----~~~~~i~~~GGEPll~~~~~~~~~~~~~~~~- 86 (370)
T PRK13758 13 SGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEA-----EGHCSFAFQGGEPTLAGLEFFEELMELQRKH- 86 (370)
T ss_pred CCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhcc-----CCceEEEEECCccccCChHHHHHHHHHHHHh-
Confidence 47999999997543211 0112344555555443221 1234688899999988767777888877765
Q ss_pred ccC-CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC----CCCHHHHHHHHHHHHhcCCeeEEEE
Q psy2378 698 LFK-KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR----THDSKQAKYAIEIAKQYFNNFNLDL 772 (956)
Q Consensus 698 ~~~-~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R----~~~~~~~~~ai~~l~~~~~~i~~dl 772 (956)
+.. -...+++.+|-..++++.++.|++.++ .+++-+.+. ++....+++ ..+.+.+.++++.+++.++.+.+-+
T Consensus 87 ~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~ 164 (370)
T PRK13758 87 NYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILC 164 (370)
T ss_pred ccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEE
Confidence 221 113467888888889999999999987 888888886 455555543 4578899999999999877667666
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEe
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYS 803 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~ 803 (956)
++. ..+.+++.+.++++.+++++.+.+.+
T Consensus 165 ~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 165 VVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred Eec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 665 35677888889999999998876543
No 297
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.87 E-value=0.00038 Score=74.38 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=120.2
Q ss_pred cCCHHHHHH-HHHcCCCcEEEeccccccccc---CC-chh-ccc-----cCCCCCCEEEEecCCCHHHHHHHHHHHHHcC
Q psy2378 21 LTDRHCRMF-HRQITRYSWLYTEMFTTQAIL---GN-KKH-CLD-----FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 89 (956)
Q Consensus 21 ~td~~fR~~-~~~~g~~~l~~tem~~~~~l~---~~-~~~-~~~-----~~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G 89 (956)
+-+..-|.. ...-||+|-++-|=..+.... +. +.- +-. ...-.-|+++|+.-+|+..-... |..+|
T Consensus 26 i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~i---A~a~g 102 (257)
T TIGR00259 26 VIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAI---AMAVG 102 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHH---HHHhC
Confidence 444444442 245567888888865554442 10 100 000 12234589999999888744333 34579
Q ss_pred CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEeccCCCCCCcHHHHHHHHHHHHHcC-CCE
Q psy2378 90 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRT 166 (956)
Q Consensus 90 ~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~~~~~~~~~~~~a~~l~~~G-~~~ 166 (956)
+|.|-+|.-|-.. + ++ . |-+.-+...+.+.-+.+.+.+.+ .|-+|...-. ...+ +.+.++.....| +|+
T Consensus 103 a~FIRv~~~~g~~-~-~d-~-G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l-~~~~---~~e~a~~~~~~~~aDa 174 (257)
T TIGR00259 103 AKFIRVNVLTGVY-A-SD-Q-GIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHL-GNRD---LESIALDTVERGLADA 174 (257)
T ss_pred CCEEEEccEeeeE-e-cc-c-ccccccHHHHHHHHHHcCCCcEEEeceeecccCcC-CCCC---HHHHHHHHHHhcCCCE
Confidence 9999998655322 1 22 1 23334455555555555522211 2333333311 1222 456677766666 999
Q ss_pred EEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccccCC
Q psy2378 167 FIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNP 239 (956)
Q Consensus 167 i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l~~P 239 (956)
|.|+|... |. +.+|+.+.++++..+++||+.+||+ +++.+.++++.||||.+|.++=.+.
T Consensus 175 vivtG~~T------G~------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~adGviVgS~~K~~G 234 (257)
T TIGR00259 175 VILSGKTT------GT------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSIADGVIVATTIKKDG 234 (257)
T ss_pred EEECcCCC------CC------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhhCCEEEECCCcccCC
Confidence 99998651 22 4799999999987767999999999 6999999998899999999876333
No 298
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.86 E-value=0.0012 Score=74.41 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=124.3
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc--ccceeEEEecC-CCCCCCCHHHHHHHHHHHHHH--
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL--NRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKL-- 696 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~--~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~-- 696 (956)
..+..|+..|.||.-.+. +.. +.-..+++++++.......+ ..+++.|.|.| |-|.. +.+.+.+.++.+...
T Consensus 98 Ssq~GC~l~C~fC~tg~~-g~~-r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll-n~~~v~~~i~~l~~~~g 174 (343)
T PRK14468 98 STMVGCPAGCAFCATGAM-GFG-RNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL-NYENVLKAARIMLHPQA 174 (343)
T ss_pred EecCCCCCcCCCCCCCCC-CCC-CCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc-CHHHHHHHHHHhccccc
Confidence 346789999999975432 211 11123455555543222111 13477888887 99876 444444444444221
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcCCC-eEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHHH-HhcCCeeEEE
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIA-KQYFNNFNLD 771 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~Gv~-risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~l-~~~~~~i~~d 771 (956)
+++.. ..+++.++- + ...++.|.+.+.. ++.+-+-+.+++..+.+. +.++.+++.++++.. ++.+..+.+-
T Consensus 175 ~~l~~-r~itvST~G--~-~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ie 250 (343)
T PRK14468 175 LAMSP-RRVTLSTVG--I-PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLE 250 (343)
T ss_pred ccccC-ceEEEECCC--C-hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 256666544 2 3466677777765 799999999999998884 667889999998644 4445555543
Q ss_pred EeecCC--CCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 772 LIYALP--NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 772 lI~GlP--gqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+++ +| .++.+++.+..+++..+. .++.+-+|.+.++. .+..|+.+. .....+.|.+.|+.
T Consensus 251 yvL-I~GvNDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~------~~~~ps~e~----i~~f~~~L~~~Gi~ 312 (343)
T PRK14468 251 YTM-LKGVNDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS------PFQSSPRAQ----ILAFADVLERRGVP 312 (343)
T ss_pred EEE-eCCCcCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC------CCCCCCHHH----HHHHHHHHHHCCCe
Confidence 333 23 578889999999999884 57888888776552 233455543 33344557776765
No 299
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=97.85 E-value=4.1e-05 Score=85.92 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=77.8
Q ss_pred cCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc--cccccccCCCCCCCCCCcCc
Q psy2378 114 MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILK 191 (956)
Q Consensus 114 ~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~--r~~~~~g~~~~~~~~~~~~~ 191 (956)
..+|-.+.|.+..+++.+..|+.+| |... .++ ++.+-+.|+++|.++. ...+..| +.-
T Consensus 200 ~~~P~i~ked~~~i~~~~~~~lv~k---GV~~------~~D-~~~a~~tg~~~I~vsnhggrqlD~g----------~st 259 (360)
T COG1304 200 LSVPVISKEDGAGISKEWAGPLVLK---GILA------PED-AAGAGGTGADGIEVSNHGGRQLDWG----------IST 259 (360)
T ss_pred cCCCcccHHHHhHHHHhcCCcHHHh---CCCC------HHH-HHhhccCCceEEEEEcCCCccccCC----------CCh
Confidence 3577888888888888888888777 4433 122 4567788999999963 3222112 245
Q ss_pred HHHHHHHHHhCCC-ceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 192 YNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 192 ~~~i~~v~~~~~~-ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
.+.+.++++.+++ +||++.|||.+..|+.++++- ||+|++||+.|
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L 306 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL 306 (360)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence 5778889888864 999999999999999999998 99999999654
No 300
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.85 E-value=0.0011 Score=74.73 Aligned_cols=204 Identities=12% Similarity=0.067 Sum_probs=127.3
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHcc
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLLL 698 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~~ 698 (956)
++..+..|+..|.||...+. + ..+.-..++++.++......+. ..+..|-|.| |-|.+ +.+.+.+.++.+...++
T Consensus 104 cvSsqvGC~~~C~FC~tg~~-g-~~rnlt~~EIv~qv~~~~~~~~-~~~~~IvfmGmGEPll-n~~~v~~~i~~l~~~~~ 179 (345)
T PRK14457 104 CVSSQVGCPMACDFCATGKG-G-LKRSLKAHEIVDQVLTVQEDMQ-RRVSHVVFMGMGEPLL-NIDEVLAAIRCLNQDLG 179 (345)
T ss_pred EEeCCCCCCCcCCcCCCCCC-C-CccccCHHHHHHHHHHHHHHhc-CCCCEEEEEecCcccc-CHHHHHHHHHHHhcccC
Confidence 44556799999999976442 2 1112235667777665433221 2467777777 99876 44555555555544333
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcC------C-CeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHH-HHhcCCe
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIG------I-NRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEI-AKQYFNN 767 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~G------v-~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~-l~~~~~~ 767 (956)
++. ..+|+.+.- + .+.++.|.+.+ . ..+.+-+-+.+++..+.+. +.++.+++.+++.. +.+.+..
T Consensus 180 i~~-r~itvST~G--~-~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~ 255 (345)
T PRK14457 180 IGQ-RRITVSTVG--V-PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRR 255 (345)
T ss_pred Ccc-CceEEECCC--c-hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCE
Confidence 322 355654421 2 23466666655 2 3588999999999999884 55677777777644 4555544
Q ss_pred --eEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 768 --FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 768 --i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+.+=+|=|+ .++.+++.+..+++..++. +|.+-+|.+.++.++ ..|+.++ .....+.|.+.|+.
T Consensus 256 I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~------~~ps~e~----i~~f~~~L~~~Gi~ 321 (345)
T PRK14457 256 VSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF------QRPSPKR----IQAFQRVLEQRGVA 321 (345)
T ss_pred EEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC------CCCCHHH----HHHHHHHHHHCCCe
Confidence 445555554 5788999999999999864 888888888776533 3455444 22334556766665
No 301
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.83 E-value=0.0017 Score=69.59 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=114.9
Q ss_pred ceEE--ccCcCcCCHH-HHHHHHHcCCCcEEEecccccccccCCchhccccCCCCCCEEEEec--------CCCHHHHHH
Q psy2378 12 KISI--APMMNLTDRH-CRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG--------DNEPKKLAK 80 (956)
Q Consensus 12 ~i~l--APM~~~td~~-fR~~~~~~g~~~l~~tem~~~~~l~~~~~~~~~~~~~~~p~~vQl~--------g~~~~~~~~ 80 (956)
-+.+ .|+.+.-|.. .-..+.++|...++++.-.... ..+.+. ...++++.+. ..+.+.+..
T Consensus 9 ~~~~~~~p~~~~~d~~~~~~~~~~~g~~av~v~~~~~~~-----~~~~~~---~~~~~i~~~~~~~~i~~p~~~~~~~~~ 80 (235)
T cd00958 9 GIEHGFGPNPGLEDPEETVKLAAEGGADAVALTKGIARA-----YGREYA---GDIPLIVKLNGSTSLSPKDDNDKVLVA 80 (235)
T ss_pred cccccCCCCccccCHHHHHHHHHhcCCCEEEeChHHHHh-----cccccC---CCCcEEEEECCCCCCCCCCCCchhhhc
Confidence 4445 8998877654 3345677775555565321111 011110 1122333331 245566666
Q ss_pred HHHHHHHcCCCEEEe--cCCCCcceeeeCcccccccCChHHHHHHHHHHhh---ccCccEEEEecc-CCC--CCCcHHHH
Q psy2378 81 SAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD---SVEIDITVKHRI-GID--DINSYDFV 152 (956)
Q Consensus 81 aA~~~~~~G~d~Iei--N~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~---~~~~pv~vKir~-g~~--~~~~~~~~ 152 (956)
.++.+.+.|+|+|++ |.+-. +.+...+.++++++ ..++|+.+=... |.. +..+.++.
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~---------------~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i 145 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSE---------------EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLI 145 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCc---------------hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHH
Confidence 677888899999955 44310 12333333444433 348888775433 110 00111234
Q ss_pred HHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCC--CCHHH----HHHHhhh-
Q psy2378 153 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKE----IDLHLNY- 225 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI--~s~~d----a~~~l~~- 225 (956)
...++...+.|+|+|-+.. +.+++.++++++.. .+||++.||+ .|+++ +.++++.
T Consensus 146 ~~~~~~a~~~GaD~Ik~~~-----------------~~~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~G 207 (235)
T cd00958 146 AYAARIGAELGADIVKTKY-----------------TGDAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAG 207 (235)
T ss_pred HHHHHHHHHHCCCEEEecC-----------------CCCHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcC
Confidence 4457888899999997731 12678889998887 6999999987 56766 5666666
Q ss_pred cCEEEEccccccCCcchHHHH
Q psy2378 226 IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 226 ad~VmiGR~~l~~P~l~~~i~ 246 (956)
+++|.+||.++..|+....++
T Consensus 208 a~gv~vg~~i~~~~dp~~~~~ 228 (235)
T cd00958 208 AAGVAVGRNIFQRPDPVAMLR 228 (235)
T ss_pred CcEEEechhhhcCCCHHHHHH
Confidence 999999999998887544433
No 302
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.82 E-value=0.00051 Score=74.14 Aligned_cols=167 Identities=15% Similarity=0.120 Sum_probs=107.0
Q ss_pred EEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCc------ccccccC--ChHHHHHHHHHHh-hccCcc
Q psy2378 66 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILMT--KPLLVSDCIKAMR-DSVEID 134 (956)
Q Consensus 66 ~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~------~G~~l~~--~~~~~~eiv~~v~-~~~~~p 134 (956)
++.=+... +.+.+.+.++.+.+.|+|.|||-+ |.+.-..|| +--+|.+ +.+.+.++++.+| +..++|
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGI--PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 55555544 668899999999999999999953 544333333 1122222 4667889999999 556788
Q ss_pred EEEEecc------CCC----------------CCCcHHHHHHHHHHHHHcCCCEEE-Eccccc-----------------
Q psy2378 135 ITVKHRI------GID----------------DINSYDFVRDFVGTVSSAGCRTFI-VHARNA----------------- 174 (956)
Q Consensus 135 v~vKir~------g~~----------------~~~~~~~~~~~a~~l~~~G~~~i~-vh~r~~----------------- 174 (956)
+.+=.-. |.+ .+.+.++..++.+.+.+.|.+.|. +...+.
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYY 171 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 7432211 111 012335556666666666666665 322220
Q ss_pred -ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccc
Q psy2378 175 -FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 236 (956)
Q Consensus 175 -~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l 236 (956)
...|.+|... ..+....+.+.++++.. ++||+..+||.+++++.+++..||||.+|.+++
T Consensus 172 vs~~GvTG~~~-~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv 232 (258)
T PRK13111 172 VSRAGVTGARS-ADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAVADGVIVGSALV 232 (258)
T ss_pred EeCCCCCCccc-CCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHH
Confidence 1123333311 11222346889999976 899999999999999999986699999999876
No 303
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.82 E-value=0.00017 Score=81.35 Aligned_cols=144 Identities=16% Similarity=0.206 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 153 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~ 153 (956)
+|....+.++.+.++|+|.|-++.- .+...|.+. -.+|..+.++++. .++||.++ +.. + .
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G---~V~---t----~ 199 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAG---GVN---D----Y 199 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEe---CCC---C----H
Confidence 4567778888889999999999841 122333111 1246655555443 57899762 111 1 2
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHh-------CC--CceEEEecCCCCHHHHHHHhh
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-------FP--ELEIIINGGIKTKKEIDLHLN 224 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~-------~~--~ipVi~nGgI~s~~da~~~l~ 224 (956)
+.++.+.++|+|+|.+. +.... +.......+......+.++++. .. .+|||+.|||.+..|+.++|+
T Consensus 200 e~A~~~~~aGaDgV~~G-~gg~~---~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA 275 (369)
T TIGR01304 200 TTALHLMRTGAAGVIVG-PGGAN---TTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA 275 (369)
T ss_pred HHHHHHHHcCCCEEEEC-CCCCc---ccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH
Confidence 44666667999999842 21100 0000000111233444444322 21 389999999999999999999
Q ss_pred h-cCEEEEccccccCCcc
Q psy2378 225 Y-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 225 ~-ad~VmiGR~~l~~P~l 241 (956)
. ||+||+|++++.--+.
T Consensus 276 lGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 276 CGADAVVLGSPLARAAEA 293 (369)
T ss_pred cCCCEeeeHHHHHhhhcC
Confidence 8 9999999988764443
No 304
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.81 E-value=0.0013 Score=73.41 Aligned_cols=200 Identities=11% Similarity=-0.044 Sum_probs=127.5
Q ss_pred CCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHcccC-
Q psy2378 623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLLLFK- 700 (956)
Q Consensus 623 ~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~~~~- 700 (956)
.+..|+..|.||.-.+. +.. +.-..++++.++...... .++..|-|.| |-|. ++.+.+.+.++.+.....++
T Consensus 109 sQvGC~~~C~FC~Tg~~-g~~-rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL-~N~d~vi~al~~l~~~~g~~~ 182 (345)
T PRK14466 109 SQVGCKMNCLFCMTGKQ-GFT-GNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPL-DNLDEVLKALEILTAPYGYGW 182 (345)
T ss_pred cCCCCCCCCCCCCCCCC-CCC-CCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCc-ccHHHHHHHHHHHhhccccCc
Confidence 45699999999985442 221 122356677776544221 2467788888 9998 44444444444443322221
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCC---CCCHHHHHHHHHHHHhc-CC--eeEEEEee
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEIAKQY-FN--NFNLDLIY 774 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R---~~~~~~~~~ai~~l~~~-~~--~i~~dlI~ 774 (956)
....++++++- +.+..-+++.+.. ..+.+-+-|.+++..+.+-+ .++.+++.++++...+. +- .+..-+|=
T Consensus 183 s~r~ItVsT~G--~~~~i~~l~~~~~-~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~ 259 (345)
T PRK14466 183 SPKRITVSTVG--LKKGLKRFLEESE-CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFK 259 (345)
T ss_pred CCceEEEEcCC--CchHHHHHhhccC-cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeC
Confidence 12467766543 4444444444444 46788899999999988875 47789999888775443 33 45555555
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 775 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
| -.++.++..+-.+++..++ .+|.+-+|.|.||.++ ..|+.+. .....+.|.+.|+.
T Consensus 260 g-vND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~~------~~~s~~~----~~~F~~~L~~~gi~ 316 (345)
T PRK14466 260 G-LNDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVDL------EGSDMAR----MEAFRDYLTSHGVF 316 (345)
T ss_pred C-CCCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCCC------cCCCHHH----HHHHHHHHHHCCCc
Confidence 5 4789999999999998876 7899999999998532 3355443 23334557777654
No 305
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.81 E-value=0.00038 Score=73.31 Aligned_cols=137 Identities=15% Similarity=0.041 Sum_probs=94.3
Q ss_pred CCCHHH-HHHHHHHHHHcCCCEEEe--cCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCc
Q psy2378 72 DNEPKK-LAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS 148 (956)
Q Consensus 72 g~~~~~-~~~aA~~~~~~G~d~Iei--N~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~ 148 (956)
|.++.. =...++.+.+.|+|.||+ |.|+|. -.+.+.+.+-++++++.+ .|+.+|+=+-...- +
T Consensus 69 G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~ 134 (221)
T PRK00507 69 GANTTAVKAFEAKDAIANGADEIDMVINIGALK------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-T 134 (221)
T ss_pred CCChHHHHHHHHHHHHHcCCceEeeeccHHHhc------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-C
Confidence 444433 344556677789999997 665553 234777888888888765 46777873321111 1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-c
Q psy2378 149 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-I 226 (956)
Q Consensus 149 ~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-a 226 (956)
.++...+++.+.++|+|+|-.+.+.. .+++..+.++.+++..+ +++|.++|||.|.+++.++++. |
T Consensus 135 ~e~i~~a~~~~~~agadfIKTsTG~~------------~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 135 DEEKVKACEIAKEAGADFVKTSTGFS------------TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCC------------CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCc
Confidence 24578889999999999887654431 12356677777777653 5999999999999999999987 8
Q ss_pred CEEEEccc
Q psy2378 227 DGVMLGRE 234 (956)
Q Consensus 227 d~VmiGR~ 234 (956)
+-+...++
T Consensus 203 ~riGtS~~ 210 (221)
T PRK00507 203 TRLGTSAG 210 (221)
T ss_pred ceEccCcH
Confidence 87655443
No 306
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.79 E-value=0.0018 Score=72.59 Aligned_cols=178 Identities=10% Similarity=-0.088 Sum_probs=114.6
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHc--c
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLL--L 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~--~ 698 (956)
..+-.|+..|.||...+. +.. +.....++++++....... ..+++.|-|.| |-|.+ +.+.+..+++.+.... +
T Consensus 102 Ssq~GC~l~C~fC~tg~~-g~~-r~l~~~EI~~qi~~~~~~~-~~~i~nIvfmGmGEPll-N~d~v~~~i~~l~~~~~~~ 177 (336)
T PRK14470 102 SSQAGCALGCAFCATGKL-GLD-RSLRSWEIVAQLLAVRADS-ERPITGVVFMGQGEPFL-NYDEVLRAAYALCDPAGAR 177 (336)
T ss_pred eCCCCcCCCCccccCCCC-CCC-CCCCHHHHHHHHHHHHHhc-CCCCCEEEEEecCcccc-CHHHHHHHHHHHhCccccc
Confidence 445679999999987553 111 1112345555554332211 23467777777 99865 4445666666665432 2
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcCC-CeEEecCCCCCHHHHHHhCC---CCCHHHHHHHHHHHHhcCC--eeEEEE
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEIAKQYFN--NFNLDL 772 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~~~R---~~~~~~~~~ai~~l~~~~~--~i~~dl 772 (956)
+. ...+++.+|-. .+...+++ +.+. .+|.+.+.+.+++..+.+-+ .++.+++.++++...+.+. .+..-+
T Consensus 178 ~~-~~~ItVsTnG~--~p~i~~l~-~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvL 253 (336)
T PRK14470 178 ID-GRRISISTAGV--VPMIRRYT-AEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVM 253 (336)
T ss_pred cC-CCceEEEecCC--hHHHHHHH-hcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 22 34677666543 34444444 4453 67999999999999999854 5788899999888777543 344555
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPN 809 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pg 809 (956)
|-|+. ++++++++-.+++..++ -++.+-+|.+.++
T Consensus 254 I~GvN-Dseeda~~La~llk~l~-~~vnlI~~N~~~~ 288 (336)
T PRK14470 254 ISGVN-VGEEDAAALGRLLAGIP-VRLNPIAVNDATG 288 (336)
T ss_pred Eeccc-CCHHHHHHHHHHHhcCC-CeEEEeccCCCCC
Confidence 55654 67999999889988774 4788888877554
No 307
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.79 E-value=6e-05 Score=77.00 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
.+++|++..+.|+|-|+.--=|....| ...++++++++++.+ .||+...|||.|.+|+.++|.. ||=|.
T Consensus 32 pVelA~~Y~e~GADElvFlDItAs~~g---------r~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 32 PVELAKRYNEEGADELVFLDITASSEG---------RETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred hHHHHHHHHHcCCCeEEEEeccccccc---------chhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeee
Confidence 689999999999999986322211111 125889999999988 8999999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
|..+++.||.+.+++.+.+
T Consensus 102 INsaAv~~p~lI~~~a~~F 120 (256)
T COG0107 102 INSAAVKDPELITEAADRF 120 (256)
T ss_pred eChhHhcChHHHHHHHHHh
Confidence 9999999999999998754
No 308
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.78 E-value=6.9e-05 Score=80.60 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++++.+.+.|++.+++--.+.... ....+++.++++.+.. ++|++.+|||+|.++++.+++. ||.|+
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~---------~~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFE---------GERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVI 103 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhc---------CCcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 57899999999999986643331111 1135889999999987 7999999999999999999988 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|..++.||+++.++.+.+
T Consensus 104 iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 104 LGTAAVENPEIVRELSEEF 122 (241)
T ss_pred EChHHhhChHHHHHHHHHh
Confidence 9999999999999998753
No 309
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.77 E-value=0.001 Score=74.90 Aligned_cols=206 Identities=9% Similarity=0.040 Sum_probs=125.7
Q ss_pred ccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHH--
Q psy2378 620 SHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKL-- 696 (956)
Q Consensus 620 ~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~-- 696 (956)
+...+-.|+..|.||.-.+. |. .+.-..+++++++......+...++..|-|.| |-|.+ +.+.+.+.++.+.+.
T Consensus 102 cvSsq~GC~l~C~FC~t~~~-G~-~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~-N~d~v~~~l~~l~~~~g 178 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKD-GL-IRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA-NYENVRKAVQIMTSPWG 178 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCC-CC-cCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc-CHHHHHHHHHHHcChhc
Confidence 33456899999999975432 21 11222455666655443322223456777777 98754 556677777777542
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcC---CCeEEecCCCCCHHHHHHhCCC---CCHHHHHHHHHHHH-hcCCeeE
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIG---INRLSIGIQSFNNKYLNILGRT---HDSKQAKYAIEIAK-QYFNNFN 769 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~G---v~risiGvQS~~d~~L~~~~R~---~~~~~~~~ai~~l~-~~~~~i~ 769 (956)
+++.. ..+++.++- +.+. ++.+.... -..+.+.+-+.|++..+.+-+. ++.+++.++++... +.+..+.
T Consensus 179 l~~~~-r~itvsT~G--~~~~-i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ 254 (348)
T PRK14467 179 LDLSK-RRITISTSG--IIHQ-IKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIM 254 (348)
T ss_pred cCcCC-CcEEEECCC--ChhH-HHHHHhhccccCeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEE
Confidence 22222 256655432 2222 33333322 2357799999999999887554 56677777765443 3466676
Q ss_pred EEEeecCCC--CCHHHHHHHHHHHHccC-CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 770 LDLIYALPN--QTLSELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 770 ~dlI~GlPg--qT~e~~~~tl~~~~~l~-~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+-+++ +|| ++++++++..+++..++ ..+|.+-+|.+.|+.++ +.|+.++ .+...+.|.+.|+.
T Consensus 255 ieyvL-IpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~------~~ps~e~----i~~f~~~L~~~gi~ 320 (348)
T PRK14467 255 LEYVL-IKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY------ERPELER----VYKFQKILWDNGIS 320 (348)
T ss_pred EEEEE-ECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC------CCCCHHH----HHHHHHHHHHCCCc
Confidence 66665 666 56999999999999884 57888888888777543 3455544 22334556666654
No 310
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.77 E-value=0.00054 Score=80.98 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHH
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD 150 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 150 (956)
|-.++.+ +-++.+.++|+|.|=|.+. + | +...+.+.++.+|+.. +.+|.++ +..
T Consensus 244 g~~~~~~-~r~~~l~~ag~d~i~iD~~--------~--g-----~~~~~~~~i~~ik~~~p~~~vi~g---~v~------ 298 (505)
T PLN02274 244 GTRESDK-ERLEHLVKAGVDVVVLDSS--------Q--G-----DSIYQLEMIKYIKKTYPELDVIGG---NVV------ 298 (505)
T ss_pred cCCccHH-HHHHHHHHcCCCEEEEeCC--------C--C-----CcHHHHHHHHHHHHhCCCCcEEEe---cCC------
Confidence 3445554 4445567789999888652 1 1 3456678899999887 5777665 111
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCC-C-CCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cC
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK-Q-NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-ID 227 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~-~-~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad 227 (956)
+.+-++.+.++|+|+|.|....+ +...+.. . ........+..+.++.+.. ++|||+-|||.++.|+.++|+. ||
T Consensus 299 -t~e~a~~a~~aGaD~i~vg~g~G-~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~ 375 (505)
T PLN02274 299 -TMYQAQNLIQAGVDGLRVGMGSG-SICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGAS 375 (505)
T ss_pred -CHHHHHHHHHcCcCEEEECCCCC-ccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 23558889999999998742211 0000100 0 0011123566688888877 7999999999999999999998 99
Q ss_pred EEEEccccccCCcc
Q psy2378 228 GVMLGREAYKNPFL 241 (956)
Q Consensus 228 ~VmiGR~~l~~P~l 241 (956)
+||+|..+.+-..-
T Consensus 376 ~V~vGs~~~~t~Es 389 (505)
T PLN02274 376 TVMMGSFLAGTTEA 389 (505)
T ss_pred EEEEchhhcccccC
Confidence 99999988764433
No 311
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.76 E-value=9.5e-05 Score=78.50 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=79.0
Q ss_pred EEeccCCCCCCc-HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC
Q psy2378 137 VKHRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 215 (956)
Q Consensus 137 vKir~g~~~~~~-~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s 215 (956)
|+..-||.+... ..+..++++.+++. ++.+++--+.+..+| .+.+++.++++.+.+ ++||++.|||.|
T Consensus 16 Vr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~~g---------~~~n~~~i~~i~~~~-~~pv~~gGGIrs 84 (228)
T PRK04128 16 VRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGAFEG---------KPKNLDVVKNIIRET-GLKVQVGGGLRT 84 (228)
T ss_pred EEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcchhcC---------CcchHHHHHHHHhhC-CCCEEEcCCCCC
Confidence 445556643221 11467899999998 999998655532222 135899999999886 799999999999
Q ss_pred HHHHHHHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 216 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 216 ~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
.+|++++++. ||.|.+|+.++ ||.+.+++.+.+
T Consensus 85 ~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~~ 118 (228)
T PRK04128 85 YESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSEF 118 (228)
T ss_pred HHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHHc
Confidence 9999999988 99999999999 999999988754
No 312
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.75 E-value=0.0002 Score=72.57 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=105.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEec
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL-NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR 140 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~Iei-N~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 140 (956)
.-|+-| .+-+|+.|..|.+ +|+|.||| |+-|-+..-+ .-..+.+.++.+..|+-. ++|++|-+.
T Consensus 61 ~lPICV--SaVep~~f~~aV~----AGAdliEIGNfDsFY~qGr--------~f~a~eVL~Lt~~tR~LLP~~~LsVTVP 126 (242)
T PF04481_consen 61 NLPICV--SAVEPELFVAAVK----AGADLIEIGNFDSFYAQGR--------RFSAEEVLALTRETRSLLPDITLSVTVP 126 (242)
T ss_pred CCCeEe--ecCCHHHHHHHHH----hCCCEEEecchHHHHhcCC--------eecHHHHHHHHHHHHHhCCCCceEEecC
Confidence 455554 4779999998775 79999999 8877654322 224678889999999887 688888765
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccccc---ccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHH
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL---KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 217 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~---~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~ 217 (956)
-... +++=+++|..|+++|+|.|.-.|++... .|..|.-.. ...-+...+.+.+.+ ++||++.-|+.+..
T Consensus 127 HiL~----ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIek--aapTLAaay~ISr~v-~iPVlcASGlS~vT 199 (242)
T PF04481_consen 127 HILP----LDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEK--AAPTLAAAYAISRAV-SIPVLCASGLSAVT 199 (242)
T ss_pred cccc----HHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHH--HhHHHHHHHHHHhcc-CCceEeccCcchhh
Confidence 5433 3345799999999999999988876310 010000000 001345567787777 89999999998766
Q ss_pred HHHHHhhhcCEEEEcccc
Q psy2378 218 EIDLHLNYIDGVMLGREA 235 (956)
Q Consensus 218 da~~~l~~ad~VmiGR~~ 235 (956)
.-..+-..|.||.+|.+.
T Consensus 200 ~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 200 APMAIAAGASGVGVGSAV 217 (242)
T ss_pred HHHHHHcCCcccchhHHh
Confidence 544444449999999864
No 313
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.75 E-value=0.00032 Score=74.97 Aligned_cols=144 Identities=11% Similarity=0.141 Sum_probs=96.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhh-ccCccEEEEeccCCC
Q psy2378 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRIGID 144 (956)
Q Consensus 66 ~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~ 144 (956)
+-+|+.|.--. +.++ +.+-.+|++-|=|| +...++ +++.++++...+ .+- +++-.+-+.-
T Consensus 79 ~~v~vgGGir~-~edv-~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~~ii--vslD~~~~~~ 139 (233)
T cd04723 79 LGLWVDGGIRS-LENA-QEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQRLV--LSLDFRGGQL 139 (233)
T ss_pred CCEEEecCcCC-HHHH-HHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCCCeE--EEEeccCCee
Confidence 45888774222 2222 23345687776553 445677 899999999864 322 3333333311
Q ss_pred -CCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHh
Q psy2378 145 -DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL 223 (956)
Q Consensus 145 -~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l 223 (956)
...+..+..++++.+++. ++.+++..-.. .| .....+++.+.++.+.+ ++||++.|||.|.+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~-~~~li~~di~~--~G-------~~~g~~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~ 208 (233)
T cd04723 140 LKPTDFIGPEELLRRLAKW-PEELIVLDIDR--VG-------SGQGPDLELLERLAARA-DIPVIAAGGVRSVEDLELLK 208 (233)
T ss_pred ccccCcCCHHHHHHHHHHh-CCeEEEEEcCc--cc-------cCCCcCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHH
Confidence 000112367889999999 99998863321 01 01136899999999886 79999999999999999999
Q ss_pred hh-cCEEEEccccccCC
Q psy2378 224 NY-IDGVMLGREAYKNP 239 (956)
Q Consensus 224 ~~-ad~VmiGR~~l~~P 239 (956)
.. +++|.+|+++..+-
T Consensus 209 ~~G~~~vivGsal~~g~ 225 (233)
T cd04723 209 KLGASGALVASALHDGG 225 (233)
T ss_pred HcCCCEEEEehHHHcCC
Confidence 88 99999999987663
No 314
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=97.73 E-value=0.0019 Score=73.23 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=125.4
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc--ccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHc-
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL--NRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLL- 697 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~--~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~- 697 (956)
...-.|+..|.||.-.+. + ..+.....++++++......+. ...+..|.|.| |-|.. +.+.+.+.++.+.+..
T Consensus 110 SsQ~GC~l~C~fC~t~~~-g-~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLl-n~d~v~~~l~~l~~~~g 186 (355)
T TIGR00048 110 SSQVGCALGCTFCATAKG-G-FNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLL-NLNEVVKAMEIMNDDFG 186 (355)
T ss_pred ecCCCCCCcCCCCCCCCC-C-CCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhh-CHHHHHHHHHHhhcccc
Confidence 345679999999975432 1 1122234455555433222111 23366666655 98865 5555666666665432
Q ss_pred -ccCCCceeEEEeCCCCCCHHHHHHHHHcCCC-eEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHH-HHhcCCe--eE
Q psy2378 698 -LFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEI-AKQYFNN--FN 769 (956)
Q Consensus 698 -~~~~~~eitle~np~~it~e~L~~L~~~Gv~-risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~-l~~~~~~--i~ 769 (956)
++. ...++++++-. . ..++.|.+.+.. .+.+-+-+.+++..+.+ +|.++.+++.++++. +++.+.. +.
T Consensus 187 ~~i~-~~~itisT~G~--~-~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtie 262 (355)
T TIGR00048 187 LGIS-KRRITISTSGV--V-PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFE 262 (355)
T ss_pred cCcC-CCeEEEECCCc--h-HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 222 13667665442 2 456777676664 68899999999999886 577888999988864 4555554 44
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 770 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 770 ~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
.-+|=|+ .++++++.+..+++..++ -+|.+-+|.+.++..+ ..|+.+. +....+.|.+.|+.
T Consensus 263 yvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPynp~~~~~~------~~ps~e~----i~~f~~~L~~~gi~ 324 (355)
T TIGR00048 263 YVLLDGV-NDQVEHAEELAELLKGTK-CKVNLIPWNPFPEADY------ERPSNEQ----IDRFAKTLMSYGFT 324 (355)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhcCC-CceEEEecccCCCCCC------CCCCHHH----HHHHHHHHHHCCCe
Confidence 4444443 467799999999999886 4788888887776533 2344433 33344556666655
No 315
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.72 E-value=0.00057 Score=72.96 Aligned_cols=197 Identities=17% Similarity=0.209 Sum_probs=117.0
Q ss_pred cCCHHHHHH-HHHcCCCcEEEecccccccccCC-chh---cc-----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHcC
Q psy2378 21 LTDRHCRMF-HRQITRYSWLYTEMFTTQAILGN-KKH---CL-----DF-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 89 (956)
Q Consensus 21 ~td~~fR~~-~~~~g~~~l~~tem~~~~~l~~~-~~~---~~-----~~-~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G 89 (956)
+-+..-|.. ...-||+|-++-|=..+..+... ... .+ .. ..-.-|+++|+.-+++..-... |..+|
T Consensus 27 iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalai---A~A~g 103 (254)
T PF03437_consen 27 IIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAI---AAATG 103 (254)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHH---HHHhC
Confidence 334444442 23446688887775555544311 000 00 00 1225799999999888754433 34579
Q ss_pred CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEeccCCCCCCcHHHHHHHHH-HHHHcCCCE
Q psy2378 90 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHRIGIDDINSYDFVRDFVG-TVSSAGCRT 166 (956)
Q Consensus 90 ~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~~~~~~~~~~~~a~-~l~~~G~~~ 166 (956)
+|.|-+|.-|-.. ..+ .|.+..+...+.+.-+.+...+.+ .|.+|....... .+ +.+.++ .++..++|+
T Consensus 104 a~FIRv~~~~g~~--~~d--~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~-~~---~~~~~~~a~~~~~aDa 175 (254)
T PF03437_consen 104 ADFIRVNVFVGAY--VTD--EGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLAT-RD---LEEAAKDAVERGGADA 175 (254)
T ss_pred CCEEEecCEEcee--ccc--CccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCC-CC---HHHHHHHHHHhcCCCE
Confidence 9999998755421 122 123333444444443333322211 122222222222 22 233444 447889999
Q ss_pred EEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccccCCcch
Q psy2378 167 FIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 242 (956)
Q Consensus 167 i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l~~P~l~ 242 (956)
|.|+|... |. +.+.+.+.++++.++ +||+.++|+ |++.+.+++..|||+.+|..+-.|=.|.
T Consensus 176 viVtG~~T------G~------~~~~~~l~~vr~~~~-~PVlvGSGv-t~~Ni~~~l~~ADG~IVGS~~K~~G~~~ 237 (254)
T PF03437_consen 176 VIVTGKAT------GE------PPDPEKLKRVREAVP-VPVLVGSGV-TPENIAEYLSYADGAIVGSYFKKDGKWE 237 (254)
T ss_pred EEECCccc------CC------CCCHHHHHHHHhcCC-CCEEEecCC-CHHHHHHHHHhCCEEEEeeeeeeCCEeC
Confidence 99998651 12 468899999999986 999999998 6999999998899999999876555443
No 316
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.72 E-value=0.0018 Score=67.77 Aligned_cols=146 Identities=13% Similarity=0.095 Sum_probs=100.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe-cc
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-RI 141 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-r~ 141 (956)
+..+++-+.-.+|..+ .++.+.++|+|.|=+|+-+| +..+.++++.+++ .++++.+-+ ..
T Consensus 52 ~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~----------------~~~~~~~i~~~~~-~g~~~~~~~~~~ 112 (206)
T TIGR03128 52 DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKK-HGKEVQVDLINV 112 (206)
T ss_pred CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCC----------------HHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 3456666543466654 45667789999999987554 2345677788776 488887753 22
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~ 221 (956)
. . ..+-++.+.+.|+|++.++.... + + ..++..++.++++++..+..++...||| +++.+.+
T Consensus 113 ~----t----~~~~~~~~~~~g~d~v~~~pg~~------~--~-~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~ 174 (206)
T TIGR03128 113 K----D----KVKRAKELKELGADYIGVHTGLD------E--Q-AKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPD 174 (206)
T ss_pred C----C----hHHHHHHHHHcCCCEEEEcCCcC------c--c-cCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHH
Confidence 1 1 23455666778999999874321 1 1 1123456788888887766667679999 7999999
Q ss_pred Hhhh-cCEEEEccccccCCcchHHH
Q psy2378 222 HLNY-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 222 ~l~~-ad~VmiGR~~l~~P~l~~~i 245 (956)
+++. ||+|.+||+++..++.-..+
T Consensus 175 ~~~~Ga~~v~vGsai~~~~d~~~~~ 199 (206)
T TIGR03128 175 VIKLGPDIVIVGGAITKAADPAEAA 199 (206)
T ss_pred HHHcCCCEEEEeehhcCCCCHHHHH
Confidence 9988 99999999998877644333
No 317
>KOG0538|consensus
Probab=97.71 E-value=0.0017 Score=69.08 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=116.5
Q ss_pred CEEEEec-CCCHHHHHHHHHHHHHcCCCEEEec----------------CCCCc----c--------eeeeC------cc
Q psy2378 65 PIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLN----------------CGCPS----N--------RVQNG------FF 109 (956)
Q Consensus 65 p~~vQl~-g~~~~~~~~aA~~~~~~G~d~IeiN----------------~gCP~----~--------~~~~~------~~ 109 (956)
---.||. -+|-+--.+..++++.+||.++=+- |.-|. . ++... .|
T Consensus 122 ~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~ 201 (363)
T KOG0538|consen 122 IRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAY 201 (363)
T ss_pred cEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhh
Confidence 3557887 4566777888899999999988772 33342 1 11110 01
Q ss_pred cccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCc
Q psy2378 110 GAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189 (956)
Q Consensus 110 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~ 189 (956)
++.. =||.+-=+=++.+++.+..|+.+|==+.. +=|+...++|++.|.|+.-.+ ++. -..|
T Consensus 202 ~~~~-id~Sl~W~Di~wLr~~T~LPIvvKGilt~----------eDA~~Ave~G~~GIIVSNHGg-------RQl-D~vp 262 (363)
T KOG0538|consen 202 VSSQ-IDPSLSWKDIKWLRSITKLPIVVKGVLTG----------EDARKAVEAGVAGIIVSNHGG-------RQL-DYVP 262 (363)
T ss_pred hhcC-CCCCCChhhhHHHHhcCcCCeEEEeeccc----------HHHHHHHHhCCceEEEeCCCc-------ccc-Cccc
Confidence 1111 13444445568888888999999933321 226778899999999963221 111 1225
Q ss_pred CcHHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhhccCCCCCCCCCHHHHHHH
Q psy2378 190 LKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINL 267 (956)
Q Consensus 190 ~~~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~ 267 (956)
+..+.+.++.+++. +|||+.-|||.+..|+.++|+- |.+|.+||+.++.-.. .|+ .-.+++++.
T Consensus 263 AtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~--------~Ge------~GV~~vl~i 328 (363)
T KOG0538|consen 263 ATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAA--------KGE------AGVKKVLDI 328 (363)
T ss_pred chHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeecc--------ccc------hhHHHHHHH
Confidence 77888888888774 5999999999999999999998 9999999987654322 132 234566666
Q ss_pred HHhhhh
Q psy2378 268 DSENRE 273 (956)
Q Consensus 268 ~~~~~e 273 (956)
+.+..|
T Consensus 329 L~~efe 334 (363)
T KOG0538|consen 329 LRDEFE 334 (363)
T ss_pred HHHHHH
Confidence 665554
No 318
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.71 E-value=0.0009 Score=72.40 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=103.1
Q ss_pred CEEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCc------ccccccC--ChHHHHHHHHHHhhccCcc
Q psy2378 65 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILMT--KPLLVSDCIKAMRDSVEID 134 (956)
Q Consensus 65 p~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~------~G~~l~~--~~~~~~eiv~~v~~~~~~p 134 (956)
.++.=|... +.+.+.+.++.+.+.|+|.|||-+ |.+.-..|| +--+|.+ +.+.+.++++++|+..++|
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGI--PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 466666544 567899999999999999999943 444333333 1222222 4678889999999878888
Q ss_pred EEEEecc------CCC----------------CCCcHHHHHHHHHHHHHcCCCEEEEccc-cc-----------------
Q psy2378 135 ITVKHRI------GID----------------DINSYDFVRDFVGTVSSAGCRTFIVHAR-NA----------------- 174 (956)
Q Consensus 135 v~vKir~------g~~----------------~~~~~~~~~~~a~~l~~~G~~~i~vh~r-~~----------------- 174 (956)
+.+=.-. |.+ .+.+.++..++.+.+.+.|++.+-+-.- |.
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL 173 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 6422111 110 0112233344444444444444433111 10
Q ss_pred -ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 175 -FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 175 -~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
...|.+|... ..+..--+.++++|+.. ++||..-+||.++++++++.+. ||||.+|.+++.
T Consensus 174 vS~~GvTG~~~-~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 174 VSTTGVTGLKT-ELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred EcCCCCCCCCc-cccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 1133344321 11111236678888876 8999999999999999999988 999999998754
No 319
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.71 E-value=0.00037 Score=82.22 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 153 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~ 153 (956)
.+++..+-|+.+.++|+|.|+|- ..| + ..+.+.+.++.+|+.++.++.|+-..-. ..
T Consensus 239 ~~~~~~~ra~~Lv~aGvd~i~vd-~a~-------g-------~~~~~~~~i~~ir~~~~~~~~V~aGnV~--------t~ 295 (502)
T PRK07107 239 NTRDYAERVPALVEAGADVLCID-SSE-------G-------YSEWQKRTLDWIREKYGDSVKVGAGNVV--------DR 295 (502)
T ss_pred ChhhHHHHHHHHHHhCCCeEeec-Ccc-------c-------ccHHHHHHHHHHHHhCCCCceEEecccc--------CH
Confidence 34455566666788999999985 111 1 2455678999999988655655542211 23
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-------C-CceEEEecCCCCHHHHHHHhhh
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------P-ELEIIINGGIKTKKEIDLHLNY 225 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-------~-~ipVi~nGgI~s~~da~~~l~~ 225 (956)
+-++.|.++|+|+|.|.-..+ . .-+-+.+.-.+...+..+.+++++. . ++|||+-|||.+.-|+.++|+.
T Consensus 296 e~a~~li~aGAd~I~vg~g~G-s-~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~ 373 (502)
T PRK07107 296 EGFRYLAEAGADFVKVGIGGG-S-ICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM 373 (502)
T ss_pred HHHHHHHHcCCCEEEECCCCC-c-CcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc
Confidence 567888899999998832211 0 0000112223344566666665542 1 3899999999999999999998
Q ss_pred -cCEEEEccccccC
Q psy2378 226 -IDGVMLGREAYKN 238 (956)
Q Consensus 226 -ad~VmiGR~~l~~ 238 (956)
||+||+||.+-+-
T Consensus 374 GA~~vm~G~~~ag~ 387 (502)
T PRK07107 374 GADFIMLGRYFARF 387 (502)
T ss_pred CCCeeeeChhhhcc
Confidence 9999999987663
No 320
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.70 E-value=0.00089 Score=70.03 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc------CCC-------
Q psy2378 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------GID------- 144 (956)
Q Consensus 78 ~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~------- 144 (956)
..+.++.+.+.|.|+|-| ||+.--..+.+.++++++|+.. +|+.+-... +.|
T Consensus 16 ~~~~~~~~~~~gtdai~v--------------GGS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILI--------------GGSQGVTYEKTDTLIEALRRYG-LPIILFPSNPTNVSRDADALFFPSV 80 (223)
T ss_pred cHHHHHHHHhcCCCEEEE--------------cCCCcccHHHHHHHHHHHhccC-CCEEEeCCCccccCcCCCEEEEEEe
Confidence 445777788899999987 5555456778999999999754 888764221 111
Q ss_pred ----CCCc-HHHHHHHHHHHHHcCC-----CEEEEcccc-c------------------------ccccCC----CCCCC
Q psy2378 145 ----DINS-YDFVRDFVGTVSSAGC-----RTFIVHARN-A------------------------FLKKLN----PKQNR 185 (956)
Q Consensus 145 ----~~~~-~~~~~~~a~~l~~~G~-----~~i~vh~r~-~------------------------~~~g~~----~~~~~ 185 (956)
+... +..-.+.++.+.+.+. .++.+.... . .+-|+. .....
T Consensus 81 lNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~ 160 (223)
T TIGR01768 81 LNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSG 160 (223)
T ss_pred ecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 1110 0112344555555442 233332111 0 000100 00122
Q ss_pred CCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHH
Q psy2378 186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 186 ~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i 245 (956)
+..+.+++.++++++.+.++|++..|||+|+++++++++. ||+|.+|..+..||.++.++
T Consensus 161 ~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 161 APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHHh
Confidence 3345678999999998656999999999999999999996 99999999999999887765
No 321
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.70 E-value=0.0042 Score=64.39 Aligned_cols=199 Identities=11% Similarity=0.145 Sum_probs=114.9
Q ss_pred ccccccCCCceEEccCcCcCCH-HHHHHHHHcCCCcEEEeccccccccc--C--Cchhcccc-CCCCCCEEEEecC-CCH
Q psy2378 3 MINSKYNKRKISIAPMMNLTDR-HCRMFHRQITRYSWLYTEMFTTQAIL--G--NKKHCLDF-NAEEHPIAFQVGD-NEP 75 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~-~fR~~~~~~g~~~l~~tem~~~~~l~--~--~~~~~~~~-~~~~~p~~vQl~g-~~~ 75 (956)
|++.+| +.|+++- -..|.+. ..+.-..+-| ++++..- .+..- . ....++.. ...+-.+...-.| .+.
T Consensus 2 i~g~~f-~SRL~lG-Tgky~s~~~m~~ai~aSg-~evvTva---lRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~tA 75 (247)
T PF05690_consen 2 IGGKEF-RSRLILG-TGKYPSPEVMREAIEASG-AEVVTVA---LRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRTA 75 (247)
T ss_dssp ETTEEE-S-SEEEE--STSSSHHHHHHHHHHTT--SEEEEE---CCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SSH
T ss_pred cCCEEe-ecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEE---EecccCCCCCCCccHHHHhcccCCEECCcCCCCCCH
Confidence 566778 8888764 3445444 4444455555 5554432 22222 1 12334444 3355667777765 589
Q ss_pred HHHHHHHHHHHHc-CCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHH
Q psy2378 76 KKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD 154 (956)
Q Consensus 76 ~~~~~aA~~~~~~-G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~ 154 (956)
++.+..|++++++ |-++|-|-. ..|. -.|+-||-...+-.+.+.+. |+-|..-+.. | .-
T Consensus 76 ~EAv~~A~laRe~~~t~wIKLEV-------i~D~--~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~~---D-------~v 135 (247)
T PF05690_consen 76 EEAVRTARLAREAFGTNWIKLEV-------IGDD--KTLLPDPIETLKAAEILVKE-GFVVLPYCTD---D-------PV 135 (247)
T ss_dssp HHHHHHHHHHHHTTS-SEEEE---------BS-T--TT--B-HHHHHHHHHHHHHT-T-EEEEEE-S-----------HH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE-------eCCC--CCcCCChhHHHHHHHHHHHC-CCEEeecCCC---C-------HH
Confidence 9999999999997 467776642 2221 23565665544444444432 5555443332 1 25
Q ss_pred HHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcc
Q psy2378 155 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 233 (956)
Q Consensus 155 ~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR 233 (956)
+|++|+++|+.++-.-+-. -....+..+...++.+++.. ++|||.-+||.++.|+.++++- ||+|++..
T Consensus 136 ~akrL~d~GcaavMPlgsP---------IGSg~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMPLGSP---------IGSGRGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHTT-SEBEEBSSS---------TTT---SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHCCCCEEEecccc---------cccCcCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 8999999999999654321 11122345778889999888 8999999999999999999998 99999988
Q ss_pred cccc
Q psy2378 234 EAYK 237 (956)
Q Consensus 234 ~~l~ 237 (956)
+.-.
T Consensus 206 AiA~ 209 (247)
T PF05690_consen 206 AIAK 209 (247)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7543
No 322
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.68 E-value=0.0004 Score=81.37 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=88.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHH
Q psy2378 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFV 156 (956)
Q Consensus 78 ~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a 156 (956)
..+-++.+.++|+|.|=|-...+ +++.+.++++.+++.. ++||.+ | +.. +.+-+
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~----g--~~~----t~~~~ 280 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVA----G--NVV----SAEGV 280 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEE----e--ccC----CHHHH
Confidence 33445556667888877754322 4688999999999876 789888 2 112 24668
Q ss_pred HHHHHcCCCEEEEccccc---ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 157 GTVSSAGCRTFIVHARNA---FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 157 ~~l~~~G~~~i~vh~r~~---~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
+.|.++|+|+|.|-.+.+ ..+++++.. .....+.++.+...++ . ++|||+.|||.++.|+.++|.. ||+||+|
T Consensus 281 ~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g-~~~~~a~~~~~~~~~~-~-~~~viadGgi~~~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 281 RDLLEAGANIIKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAEARK-L-GGHVWADGGVRHPRDVALALAAGASNVMVG 357 (475)
T ss_pred HHHHHhCCCEEEECCcCCccccCccccCCC-CchHHHHHHHHHHHHH-c-CCcEEEeCCCCCHHHHHHHHHcCCCEEeec
Confidence 889999999999865432 112222110 0011123333333343 4 6999999999999999999998 9999999
Q ss_pred ccccc
Q psy2378 233 REAYK 237 (956)
Q Consensus 233 R~~l~ 237 (956)
+.+-+
T Consensus 358 ~~~ag 362 (475)
T TIGR01303 358 SWFAG 362 (475)
T ss_pred hhhcc
Confidence 97654
No 323
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.66 E-value=0.0013 Score=68.56 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=60.6
Q ss_pred HHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcc
Q psy2378 155 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 233 (956)
Q Consensus 155 ~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR 233 (956)
-++.+++.|+|++.++.-.. ..+ . ...++.+|+.++++++.+ ++||++.||| +++++.++++. +|+|++|+
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~---t~~--k-~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s 178 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFP---TDC--K-KGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAVMS 178 (201)
T ss_pred HHHHHHHcCCCEEEECCCCC---CCC--C-CCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEH
Confidence 36778899999997643211 001 0 112345899999999887 7999999999 89999999988 99999999
Q ss_pred ccccCCcchH
Q psy2378 234 EAYKNPFLMS 243 (956)
Q Consensus 234 ~~l~~P~l~~ 243 (956)
++...++...
T Consensus 179 ~i~~~~~p~~ 188 (201)
T PRK07695 179 GIFSSANPYS 188 (201)
T ss_pred HHhcCCCHHH
Confidence 9986544433
No 324
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=97.64 E-value=0.0005 Score=72.51 Aligned_cols=212 Identities=14% Similarity=0.141 Sum_probs=134.9
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhh-cccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC-
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELS-LPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK- 701 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~-~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~- 701 (956)
+-+|.+-|.||.- .......+.++- -+|+... .+.+...-|+.+|+..|.-.. +...++++++-++. +++..
T Consensus 61 TN~CiyDC~YCIN-r~s~~~pra~ft---p~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~DyTmE~mi~var~-LRle~~ 134 (404)
T COG4277 61 TNFCIYDCAYCIN-RSSNDTPRARFT---PEEIVDLTLNFYRRNYIEGLFLSSGVIKN-PDYTMEEMIEVARI-LRLEHK 134 (404)
T ss_pred hhhHHHhhHHHhc-cccCCCcccccC---HHHHHHHHHHHHHHhhhhhheeccccccC-cchHHHHHHHHHHH-Hhhccc
Confidence 4689999999943 222333333332 1233221 122222346778887765222 22335555444433 23322
Q ss_pred -CceeEEEeCCCCCCHHHHHHHHHcC--CCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--------------
Q psy2378 702 -NISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-------------- 764 (956)
Q Consensus 702 -~~eitle~np~~it~e~L~~L~~~G--v~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~-------------- 764 (956)
.--+.+-+-|+. ++++ .+++| +.|+|+.+|.-.++-|+.+--..+..++.+.+.+++..
T Consensus 135 f~GYIHlK~IPga-s~~l---i~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~t 210 (404)
T COG4277 135 FRGYIHLKIIPGA-SPDL---IKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHT 210 (404)
T ss_pred cCcEEEEEecCCC-CHHH---HHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccC
Confidence 135666666663 3444 44556 68999999999999999999888888999888877651
Q ss_pred --CCe--eEEEEeecCCCCCHHHHHHHHHHH-HccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy2378 765 --FNN--FNLDLIYALPNQTLSELMLDLNYA-IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 839 (956)
Q Consensus 765 --~~~--i~~dlI~GlPgqT~e~~~~tl~~~-~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 839 (956)
|.. =++.+|+|-.|+|.+++...-+.+ .+++..++.+..|+|.|+||+--..+ |+.-...++|+ +..+|.-
T Consensus 211 p~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~---pplmRehRLYQ-ADwLlrf 286 (404)
T COG4277 211 PEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDK---PPLMREHRLYQ-ADWLLRF 286 (404)
T ss_pred ccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcccC---CchhHHHHHHH-HHHHHHH
Confidence 111 378999999999999988777665 57889999999999999999764321 22222233443 3455666
Q ss_pred cCchhHHHHh
Q psy2378 840 NYYKNYEISA 849 (956)
Q Consensus 840 ~g~~~yeis~ 849 (956)
-||.+-|+.+
T Consensus 287 YgF~~~Ei~~ 296 (404)
T COG4277 287 YGFSADEILA 296 (404)
T ss_pred hCCCHHHHHh
Confidence 7899888854
No 325
>PLN02591 tryptophan synthase
Probab=97.63 E-value=0.0017 Score=69.69 Aligned_cols=159 Identities=13% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCc------ccccccC--ChHHHHHHHHHHhhccCccEEEEecc---
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILMT--KPLLVSDCIKAMRDSVEIDITVKHRI--- 141 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~------~G~~l~~--~~~~~~eiv~~v~~~~~~pv~vKir~--- 141 (956)
.|.+.+.+.++.+.+.|+|.|||-+ |.+.-..|| +--+|.+ +.+.+.++++.+|+..++|+.+=.-.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGV--PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 3678899999999999999999943 443333333 1122222 56788899999998788886432211
Q ss_pred ---C------------CC----CCCcHHHHHHHHHHHHHcCCCEEEEcc-ccc------------------ccccCCCCC
Q psy2378 142 ---G------------ID----DINSYDFVRDFVGTVSSAGCRTFIVHA-RNA------------------FLKKLNPKQ 183 (956)
Q Consensus 142 ---g------------~~----~~~~~~~~~~~a~~l~~~G~~~i~vh~-r~~------------------~~~g~~~~~ 183 (956)
| .+ .+.+.++..++.+.+.+.|++.|.+-. -+. ...|.+|..
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 1 10 012334555566666666666665431 110 012333321
Q ss_pred CCCCCcCcH-HHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 184 NRKIPILKY-NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 184 ~~~~~~~~~-~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
. .-+.+. +.++++|+.. ++||+..-||.++++++++++. ||||.+|.+++
T Consensus 171 ~--~~~~~~~~~i~~vk~~~-~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 171 A--SVSGRVESLLQELKEVT-DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred c--CCchhHHHHHHHHHhcC-CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 1 112333 5588898865 8999999999999999999998 99999999876
No 326
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.62 E-value=0.0024 Score=71.44 Aligned_cols=213 Identities=9% Similarity=0.027 Sum_probs=137.6
Q ss_pred CCCCccee---eeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 623 KIPYKVII---NEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 623 ~~P~c~~~---Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
.|++|... |.||.+.....+. .......+.+|.....-.-......-..-+++.++..+ +++......+..+..
T Consensus 33 ~~~~c~~~~~~C~~cy~~v~~~~~-~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~~~d~~c~p--~le~~~~r~~~~~~d 109 (414)
T COG1625 33 GCKDCIPYRFGCDDCYLSVNELDT-GFIPPLMVEKEPDEDLGLEFEEVLGAKQCGNGDTFCYP--DLEPRGRRARLYYKD 109 (414)
T ss_pred CCCcCCCccccccceeeEEecccC-CCCCHhHhhcccccccccccccccceeecCCCCcccCc--chhhhhhHHHhhcCC
Confidence 45677776 9999764432221 11122345555432111000010111222334444433 466677777766533
Q ss_pred CCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCC
Q psy2378 700 KKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQ 779 (956)
Q Consensus 700 ~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgq 779 (956)
.+ ..++.-.--.....+..+.+.++|+.-+++-|+|.++++.+.|=|...+++..+.+++..+.++.+.+++++ .||=
T Consensus 110 ~~-~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl-~PGv 187 (414)
T COG1625 110 DD-IRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVL-CPGV 187 (414)
T ss_pred cc-ceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEE-cCCc
Confidence 22 233333322223445666689999999999999999999999999999999999999999999889998877 5998
Q ss_pred C-HHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q psy2378 780 T-LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNY 841 (956)
Q Consensus 780 T-~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 841 (956)
+ -+++.+|++.+.+++++.+.+....|.--|. ++.+-...+..++..++....+++..+.|
T Consensus 188 Ndge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~-~n~~~i~~~t~~~l~~~k~i~re~~~E~~ 249 (414)
T COG1625 188 NDGEELEKTLEDLEEWGAHEVILMRVVPVGLTR-YNRPGIRPPTPHELEEFKEIVREFDRELG 249 (414)
T ss_pred CcHHHHHHHHHHHHHhCcCceeEEEeecceeee-cCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 8 9999999999999999999888744444443 33333445556666666777777777776
No 327
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.62 E-value=0.00068 Score=80.42 Aligned_cols=167 Identities=11% Similarity=0.134 Sum_probs=109.4
Q ss_pred CCEEEEecCC--CHHH-------HHHHHHHHHHcCCCEEEecCC---CCcceeeeCcccccccCChHHHHHHHHHHhhc-
Q psy2378 64 HPIAFQVGDN--EPKK-------LAKSAKIIQKWGYDEINLNCG---CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS- 130 (956)
Q Consensus 64 ~p~~vQl~g~--~~~~-------~~~aA~~~~~~G~d~IeiN~g---CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~- 130 (956)
.-+=+|++|. +.++ ..+.|+.+-++|+|-|=||-. -|- .-|-++-..+|+++.++.+..-+.
T Consensus 313 ~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~-----~~~~~~~~~~p~~i~~~~~~fg~q~ 387 (538)
T PLN02617 313 VFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAE-----EYIASGVKTGKTSIEQISRVYGNQA 387 (538)
T ss_pred CCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChh-----hhhccccccCHHHHHHHHHHcCCce
Confidence 3355788774 2222 245566777789999999853 120 011222355799999999988544
Q ss_pred cCccEEEE---------------------------------eccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc--cccc
Q psy2378 131 VEIDITVK---------------------------------HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAF 175 (956)
Q Consensus 131 ~~~pv~vK---------------------------------ir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~--r~~~ 175 (956)
+-+-+.+| +. ||...... +..++++.+++.|+..|-+.. |.+.
T Consensus 388 ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-gg~~~~~~-~~~~~~~~~~~~Gageil~t~id~DGt 465 (538)
T PLN02617 388 VVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVK-GGREGRPI-GAYELAKAVEELGAGEILLNCIDCDGQ 465 (538)
T ss_pred EEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEe-cCcccCCC-CHHHHHHHHHhcCCCEEEEeecccccc
Confidence 22222222 22 34332222 478999999999999998873 3333
Q ss_pred cccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcchHHHHHhh
Q psy2378 176 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 176 ~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
.+| .|++.++++++.+ ++|||++||+.+++|+.+++.. +|+++.|.-+--.-.=..++++.+
T Consensus 466 ~~G-----------~d~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l 529 (538)
T PLN02617 466 GKG-----------FDIELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHL 529 (538)
T ss_pred ccC-----------cCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHH
Confidence 333 5999999999987 8999999999999999999985 899988854333333334444433
No 328
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.61 E-value=0.0013 Score=68.67 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 190 ~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
.+.+.++++++.+.++|++.-|||+|+++++++++. ||+|.+|..+..||.++.++.
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~~~~v 218 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALETV 218 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHh
Confidence 578899999987536999999999999999999996 999999999999999887764
No 329
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.61 E-value=0.0012 Score=78.22 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHH
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD 150 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 150 (956)
+-+|+ -.+.++.+.++|+|.|=++.. + | +...+.+.++.+++.. +.||.++--.
T Consensus 224 ~~~~~-~~e~a~~L~~agvdvivvD~a--------~--g-----~~~~vl~~i~~i~~~~p~~~vi~g~v~--------- 278 (486)
T PRK05567 224 GVGAD-NEERAEALVEAGVDVLVVDTA--------H--G-----HSEGVLDRVREIKAKYPDVQIIAGNVA--------- 278 (486)
T ss_pred ccCcc-hHHHHHHHHHhCCCEEEEECC--------C--C-----cchhHHHHHHHHHhhCCCCCEEEeccC---------
Confidence 44443 356777778889998744321 1 1 2345778889999887 7898884211
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC--CCceEEEecCCCCHHHHHHHhhh-cC
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEIDLHLNY-ID 227 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~--~~ipVi~nGgI~s~~da~~~l~~-ad 227 (956)
..+-++.|.++|+|+|.+-.... . -.+.+.....+...+..+.++++.. .++|||+.|||.++.|+.++++. ||
T Consensus 279 -t~e~a~~l~~aGad~i~vg~g~g-s-~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~ 355 (486)
T PRK05567 279 -TAEAARALIEAGADAVKVGIGPG-S-ICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGAS 355 (486)
T ss_pred -CHHHHHHHHHcCCCEEEECCCCC-c-cccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCC
Confidence 23557889999999998743210 0 0000111122334677787776643 26999999999999999999998 99
Q ss_pred EEEEccccccCC
Q psy2378 228 GVMLGREAYKNP 239 (956)
Q Consensus 228 ~VmiGR~~l~~P 239 (956)
+||+|..+-+--
T Consensus 356 ~v~~G~~~a~~~ 367 (486)
T PRK05567 356 AVMLGSMLAGTE 367 (486)
T ss_pred EEEECccccccc
Confidence 999999775543
No 330
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.60 E-value=0.00042 Score=73.30 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=73.8
Q ss_pred ccccccCChHHHHHHHHHHhhccCccEEEE-e---ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCC
Q psy2378 109 FGAILMTKPLLVSDCIKAMRDSVEIDITVK-H---RIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPK 182 (956)
Q Consensus 109 ~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK-i---r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~ 182 (956)
.|+..+++|+++.++.. .+. +.+| - ..||.. ...++...+.+.|+ .+.+. .|.+..
T Consensus 107 igT~a~~~p~~l~~~~~----vvs--lD~~~g~v~~~g~~~-----~~~~~~~~~~~~g~-~ii~tdI~~dGt~------ 168 (221)
T TIGR00734 107 VATETLDITELLRECYT----VVS--LDFKEKFLDASGLFE-----SLEEVRDFLNSFDY-GLIVLDIHSVGTM------ 168 (221)
T ss_pred ecChhhCCHHHHHHhhh----EEE--EEeECCccccccccc-----cHHHHHHHHHhcCC-EEEEEECCccccC------
Confidence 35667789999887751 222 2222 1 124542 25677778888998 55443 222211
Q ss_pred CCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 183 ~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
...|++.++++++.+ ++|||+.|||.|++|+.++.+. +|+|++|+++..
T Consensus 169 -----~G~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 169 -----KGPNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred -----CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 135999999999987 7999999999999999997766 999999998764
No 331
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.59 E-value=0.002 Score=68.77 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=105.3
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCc------cccccc--CChHHHHHHHHHHhhc-cCcc
Q psy2378 66 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMRDS-VEID 134 (956)
Q Consensus 66 ~~vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~------~G~~l~--~~~~~~~eiv~~v~~~-~~~p 134 (956)
++.=+.+ .+++...+.++.+.+.|+|.|||- =|.+.-.-|| .=-+|- -.++.+.++++.+|+. .++|
T Consensus 19 ~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELG--vPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~P 96 (265)
T COG0159 19 LIPYVTAGDPDLETSLEIIKTLVEAGADILELG--VPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVP 96 (265)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEec--CCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCC
Confidence 4443433 367899999999999999999994 3544433333 001121 2578889999999955 6788
Q ss_pred EEEEeccC------------------CC----CCCcHHHHHHHHHHHHHcCCCEEEEccccc------------------
Q psy2378 135 ITVKHRIG------------------ID----DINSYDFVRDFVGTVSSAGCRTFIVHARNA------------------ 174 (956)
Q Consensus 135 v~vKir~g------------------~~----~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~------------------ 174 (956)
+.+=.-.+ .+ .+-+.++..++.+.+++.|++.|-+-+-+.
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~ 176 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYY 176 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 87653221 11 011233444555555666666665432211
Q ss_pred -ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEcccc
Q psy2378 175 -FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREA 235 (956)
Q Consensus 175 -~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~ 235 (956)
...|.+|........ --+.++++|+.. ++||..-=||.++++++++.+.||||.+|.++
T Consensus 177 vs~~GvTG~~~~~~~~-~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAi 236 (265)
T COG0159 177 VSRMGVTGARNPVSAD-VKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEAADGVIVGSAI 236 (265)
T ss_pred EecccccCCCcccchh-HHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHhCCeEEEcHHH
Confidence 112333332221111 246788888877 89999888999999999999889999999974
No 332
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=97.59 E-value=0.0039 Score=67.70 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=117.9
Q ss_pred CCCcceeeeeeeccccc-CCcchHHH--HHHHHHHHhhhccccc--ccceeEEEec-CCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 624 IPYKVIINEAIELVKSF-GNIDEKKY--LEALLIDVELSLPIIL--NRKIHTIFIG-GGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~-~~~~~~~~--v~~vl~eI~~~~~~~~--~~~i~~i~fg-ggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
...|.+.|.||..-... .......| .+.+..+++......+ ...++++.|. .|-|++.+ .|..+++.+++.-
T Consensus 31 ~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~--~L~elI~~~k~~g 108 (296)
T COG0731 31 KKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYP--NLGELIEEIKKRG 108 (296)
T ss_pred hhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCccccc--CHHHHHHHHHhcC
Confidence 34899999999872211 11112222 3456666665544321 1357777774 58888764 4888888888762
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCC---CHHHHHHHHHHHHhc--CC-eeEEE
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH---DSKQAKYAIEIAKQY--FN-NFNLD 771 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~---~~~~~~~ai~~l~~~--~~-~i~~d 771 (956)
. ...-+-+|-.. ++.++.|. -.+-+++-+.+.+++..+.++|++ ..+.+.+.++.+++. +. -+.+.
T Consensus 109 ~----~~tflvTNgsl--pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~t 180 (296)
T COG0731 109 K----KTTFLVTNGSL--PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTT 180 (296)
T ss_pred C----ceEEEEeCCCh--HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEE
Confidence 1 12222223332 67777776 468899999999999999999997 567888888888884 33 34566
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCc
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNT 810 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT 810 (956)
++=|++ .+.+++.+-.+++....|+.|.+-.++-.|-.
T Consensus 181 lvkg~N-~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas 218 (296)
T COG0731 181 LVKGIN-DDEEELEEYAELLERINPDFVELKTYMRPGAS 218 (296)
T ss_pred Eecccc-CChHHHHHHHHHHHhcCCCeEEEecCccCChH
Confidence 666664 45566777888999999999988887765543
No 333
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.57 E-value=0.0012 Score=68.30 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=96.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcc----eeeeCcc-----cccccCChHHH-------------
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN----RVQNGFF-----GAILMTKPLLV------------- 120 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~----~~~~~~~-----G~~l~~~~~~~------------- 120 (956)
..|++.=+.+.+++++.+.++.+.+.|++.||+.+-.|.. ...++.| |+...-+++.+
T Consensus 3 ~~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 3 AQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred cCcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 3567777889999999999999999999999996543310 0001111 22222222222
Q ss_pred ----HHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHH
Q psy2378 121 ----SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196 (956)
Q Consensus 121 ----~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~ 196 (956)
.++++..++ .+.|+.+ |.. + ..+ +....++|+|+|-+.... +...++++
T Consensus 83 p~~~~~~~~~~~~-~~~~~i~----gv~---t---~~e-~~~A~~~Gad~i~~~p~~---------------~~g~~~~~ 135 (190)
T cd00452 83 PGLDPEVVKAANR-AGIPLLP----GVA---T---PTE-IMQALELGADIVKLFPAE---------------AVGPAYIK 135 (190)
T ss_pred CCCCHHHHHHHHH-cCCcEEC----CcC---C---HHH-HHHHHHCCCCEEEEcCCc---------------ccCHHHHH
Confidence 233333332 2444432 322 1 223 445567999999874321 23567888
Q ss_pred HHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 197 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 197 ~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
.+++.+|++|+++.||| +++.+.++++. +|+|.++..+.
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 88887777999999999 89999999998 99999999987
No 334
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.57 E-value=0.0002 Score=80.35 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHH
Q psy2378 115 TKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193 (956)
Q Consensus 115 ~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~ 193 (956)
.+++-+.+.|+.+|+.. +.||+||+-.+... ..++..+.++|+|.|+|.|..+. .|.+|......-...|.
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~-------~~~~~~~~~ag~D~ItIDG~~GG-TGAap~~~~d~~GlP~~ 256 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGV-------EDIAAGAAKAGADFITIDGAEGG-TGAAPLTSMDHVGLPTE 256 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTH-------HHHHHHHHHTT-SEEEEE-TT----SSEECCHHHHC---HH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcH-------HHHHHhhhhccCCEEEEeCCCCC-CCCCchhHHhhCCCcHH
Confidence 46788999999999998 89999999876431 12333488999999999976531 11111110000011121
Q ss_pred -HHHHHHHh-----C-CCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 194 -FVYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 194 -~i~~v~~~-----~-~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
.+.++.+. + ..+.+|+.|++.++.|+.+++.- ||+|.+||++|-
T Consensus 257 ~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~li 308 (368)
T PF01645_consen 257 YALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence 22333221 1 24899999999999999999988 999999999764
No 335
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.55 E-value=0.0017 Score=68.98 Aligned_cols=158 Identities=21% Similarity=0.286 Sum_probs=105.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHcCCCEE--EecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEec
Q psy2378 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR 140 (956)
Q Consensus 64 ~p~~vQl~g~~~~~~~~aA~~~~~~G~d~I--eiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 140 (956)
..+.++|.+.|+..+.+..+.++++|+|.+ ||-=|.=++|. .+| .++++++|+.. ++|+.+|+-
T Consensus 7 ~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~---~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 7 AIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL---SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred CEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc---CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 346788999999999999999999998864 44334333332 222 35678888777 899999987
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccc-----------ccc------CCCC---------------------
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF-----------LKK------LNPK--------------------- 182 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~-----------~~g------~~~~--------------------- 182 (956)
.. + ...+++.+.++|+|.+++|.-... ..| +.+.
T Consensus 74 ~~--~------p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m 145 (228)
T PTZ00170 74 VS--N------PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVM 145 (228)
T ss_pred CC--C------HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhh
Confidence 31 1 345678888999999999954210 000 0000
Q ss_pred ------CCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchH
Q psy2378 183 ------QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMS 243 (956)
Q Consensus 183 ------~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~ 243 (956)
.+....+..++.++++++..+...+...||| +++.+..+.+. +|.+.+||++...++..+
T Consensus 146 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~ 212 (228)
T PTZ00170 146 TVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQ 212 (228)
T ss_pred hcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHH
Confidence 0000001123456677776656778899999 47888888887 999999999887777433
No 336
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.51 E-value=0.0019 Score=67.52 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=91.3
Q ss_pred CCCH-HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcH
Q psy2378 72 DNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY 149 (956)
Q Consensus 72 g~~~-~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~ 149 (956)
|..+ +.=..-++.+.+.|+|.||+-+ .+|.-...+.+.+.+-++++++.+ +.|+-|-+-.+.- +.
T Consensus 65 G~~~~~~K~~E~~~Av~~GAdEiDvv~----------n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L---~~ 131 (211)
T TIGR00126 65 GASTTDVKLYETKEAIKYGADEVDMVI----------NIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLL---TD 131 (211)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEeec----------chHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCC---CH
Confidence 4444 3334445667788999999954 245444557788888888888877 4555553443431 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC-CceEEEecCCCCHHHHHHHhhh-cC
Q psy2378 150 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-ID 227 (956)
Q Consensus 150 ~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad 227 (956)
++....++...++|+|+|-.+.+. .+ +++..+.++.+++.++ .+||-+.|||.|.+++.++++. |+
T Consensus 132 ~ei~~a~~ia~eaGADfvKTsTGf------~~------~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTSTGF------GA------GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCC------CC------CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhH
Confidence 457788999999999999776442 11 1355555555555542 5899999999999999999987 66
Q ss_pred EEE
Q psy2378 228 GVM 230 (956)
Q Consensus 228 ~Vm 230 (956)
-+.
T Consensus 200 riG 202 (211)
T TIGR00126 200 RIG 202 (211)
T ss_pred HhC
Confidence 443
No 337
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.50 E-value=0.00034 Score=75.14 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++|+.+++.|++.|++---.+. .| .+.+.+.++++.+.+ ++||..-|||.|.+|+++++.. ||-|
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g---------~~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kv 101 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FG---------RGSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARV 101 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CC---------CCccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 3578999999999999998643321 11 235889999999988 7999999999999999999998 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
.+|..++.||.++.++.+.+
T Consensus 102 viGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEH 121 (241)
T ss_pred EECchHhCCHHHHHHHHHHh
Confidence 99999999999999988644
No 338
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.49 E-value=0.00034 Score=75.89 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++|+.+++.|++.|++.-=.+. + ...+.+++.++++.+.+ ++||++.|||.+.+++++++.. ++.|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~--~-------~~~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~v 100 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS--K-------RGSEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKV 100 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC--c-------CCCcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEE
Confidence 4689999999999999998632210 0 01135899999999986 7999999999999999999977 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
.+|++++.||.++.++.+.+
T Consensus 101 vigs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 101 SINTAALEDPDLITEAAERF 120 (258)
T ss_pred EEChHHhcCHHHHHHHHHHh
Confidence 99999999999999988754
No 339
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.48 E-value=0.017 Score=65.49 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=130.2
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc-------ccceeEEEecC-CCCCCCCHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL-------NRKIHTIFIGG-GTPSLISDTGLDYLLKNI 693 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~-------~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i 693 (956)
..+-.|+..|.||.-.+. + ..+.-..+++++++......+. ..++..|.|.| |-|.. +.+.+.+.++.+
T Consensus 126 SsQvGC~m~C~FCatg~~-g-~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl-N~d~V~~~i~~l 202 (373)
T PRK14459 126 SSQAGCGMACPFCATGQG-G-LTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA-NYKRVVAAVRRI 202 (373)
T ss_pred EecCCCCCcCCCCCCCCC-C-CCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh-hHHHHHHHHHHH
Confidence 446899999999974432 1 1222334555555544322211 13477888988 98754 455566666666
Q ss_pred HHH----cccCCCceeEEEeCCCCCCHHHHHHHHHcCCC-eEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHHHH-hc
Q psy2378 694 KKL----LLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAK-QY 764 (956)
Q Consensus 694 ~~~----~~~~~~~eitle~np~~it~e~L~~L~~~Gv~-risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~l~-~~ 764 (956)
.+. +++.. ..+|+.+ .-+. ..++.|.+.+.. ++.+-+-|.|++..+.+= |.++.+++.++++... +.
T Consensus 203 ~~~~~~g~gis~-r~ITvST--~Gl~-~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~ 278 (373)
T PRK14459 203 TAPAPEGLGISA-RNVTVST--VGLV-PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADAT 278 (373)
T ss_pred hCcccccCCccC-CEEEEEC--cCch-hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHh
Confidence 541 23221 2555443 3232 356677777765 799999999999987763 5689999999976555 44
Q ss_pred CCeeE--EEEeecCCCCCHHHHHHHHHHHHccC--CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy2378 765 FNNFN--LDLIYALPNQTLSELMLDLNYAIQYS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 840 (956)
Q Consensus 765 ~~~i~--~dlI~GlPgqT~e~~~~tl~~~~~l~--~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 840 (956)
+..+. .=+|=|+ .+++++.++..+++..++ +-+|.+-+|.+.++.++ ..|+.+. .....+.|.++
T Consensus 279 grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y------~~~~~~~----~~~F~~~L~~~ 347 (373)
T PRK14459 279 GRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW------TASPPEV----EREFVRRLRAA 347 (373)
T ss_pred CCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC------cCCCHHH----HHHHHHHHHHC
Confidence 65544 4444443 678999999999999885 67899999999887643 2344433 23334567777
Q ss_pred Cch
Q psy2378 841 YYK 843 (956)
Q Consensus 841 g~~ 843 (956)
|+.
T Consensus 348 gi~ 350 (373)
T PRK14459 348 GVP 350 (373)
T ss_pred CCe
Confidence 765
No 340
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.46 E-value=0.0016 Score=68.84 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=94.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCC
Q psy2378 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 145 (956)
Q Consensus 66 ~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 145 (956)
+.++|...|+..+.+.++.+.+.|+|.|++-. .| +.+..+..+..+.++.+++.+..|+.+-+-.. +
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~--------~d---~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--d 72 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDV--------MD---GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--N 72 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeC--------cc---CCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--C
Confidence 77889999999999999999999999999931 11 11111222345666777765544433332221 1
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEccccc--------------c-----------------c-cc-----CCCC-CCCCC
Q psy2378 146 INSYDFVRDFVGTVSSAGCRTFIVHARNA--------------F-----------------L-KK-----LNPK-QNRKI 187 (956)
Q Consensus 146 ~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------~-----------------~-~g-----~~~~-~~~~~ 187 (956)
..+.+..+.++|+|.+++|+... . + .. +.+. .....
T Consensus 73 ------~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg 146 (220)
T PRK05581 73 ------PDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGG 146 (220)
T ss_pred ------HHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 12334455577888877775310 0 0 00 0000 00011
Q ss_pred CcCcHHH---HHHHHHhCC--C--ceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 188 PILKYNF---VYNLKKDFP--E--LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 188 ~~~~~~~---i~~v~~~~~--~--ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
...+|.. +.++++..+ + .+|..-|||+. +++.++++. +|+|.+|+++..+|+....++
T Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 147 QKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCHHHHHH
Confidence 1223433 444444321 1 23557799975 899999877 999999999999888655544
No 341
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.45 E-value=0.0054 Score=69.11 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=123.9
Q ss_pred cCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeE-EEecCCCCCCCCHHHHHHHHHHHHHHccc
Q psy2378 621 HYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHT-IFIGGGTPSLISDTGLDYLLKNIKKLLLF 699 (956)
Q Consensus 621 ~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~-i~fgggtPs~L~~~~l~~ll~~i~~~~~~ 699 (956)
...+..|+..|.||.-.+. | ..+.--++++++++......+. ..+.. +++|+|-|.. +.+.+.++++.+.+..++
T Consensus 105 vSsqvGC~~~C~FC~tg~~-G-~~rnlt~~EI~~qv~~~~~~~~-~~~~gvV~mggGEPLl-n~d~v~~~l~~l~~~~gi 180 (342)
T PRK14454 105 VSTQVGCRMGCKFCASTIG-G-MVRNLTAGEMLDQILAAQNDIG-ERISNIVLMGSGEPLD-NYENVMKFLKIVNSPYGL 180 (342)
T ss_pred EEcCCCCCCcCCcCCCCCC-C-CcccCCHHHHHHHHHHHHHHhc-CCCCCEEEECCchhhc-CHHHHHHHHHHHhccccc
Confidence 3457899999999964322 1 1122235667777655443322 12333 7889999864 666777788877653222
Q ss_pred C-CCceeEEEeCCCCCCHHHHHHHHHcCC-CeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHH-HHhcCCeeE--EE
Q psy2378 700 K-KNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEI-AKQYFNNFN--LD 771 (956)
Q Consensus 700 ~-~~~eitle~np~~it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~-l~~~~~~i~--~d 771 (956)
. ....++++++- +.+. +..+.+.+. ..+.+-+-+.+++..+.+- +.+..+++.++++. +.+.+..+. .=
T Consensus 181 ~~~~r~itvsTsG--~~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~ 257 (342)
T PRK14454 181 NIGQRHITLSTCG--IVPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYA 257 (342)
T ss_pred CcCCCceEEECcC--ChhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEE
Confidence 1 11255665522 3344 344555432 3489999999999988765 44566666666644 444454444 44
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+|=|+ .++++++++..+++..+ +.+|.+-+|.+.++.. ++.|+.+. .....+.|.+.|+.
T Consensus 258 LI~gv-NDs~eda~~La~llk~l-~~~VnLiPyn~~~~~~------~~~ps~e~----l~~f~~~l~~~gi~ 317 (342)
T PRK14454 258 LVKGV-NDSKEDAKELGKLLKGM-LCHVNLIPVNEVKENG------FKKSSKEK----IKKFKNILKKNGIE 317 (342)
T ss_pred eECCC-CCCHHHHHHHHHHHhcC-CceEEEEecCCCCCCC------CCCCCHHH----HHHHHHHHHHCCCc
Confidence 44443 57899999999999887 4688888888876653 33455443 23334556776655
No 342
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.45 E-value=0.0043 Score=66.17 Aligned_cols=147 Identities=15% Similarity=0.240 Sum_probs=98.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCC-CCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 140 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~g-CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 140 (956)
.+.++.+.|.-++|+++.+.+ .++|+|+|=+|.+ +. .+...+.++.+++. +.-+ -+.
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~i--Gls 121 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKA--GVV 121 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeE--EEE
Confidence 355678999999999988766 5679999999976 12 12345566666643 3222 222
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcC-CCEEE---EcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAG-CRTFI---VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 216 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G-~~~i~---vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~ 216 (956)
..+. . ..+.++.+.+.| +|+|. ++..+ ++ +. .++..++.+.++++..+++||.+-||| ++
T Consensus 122 ~~~~--t----~~~~~~~~~~~~~~Dyi~~~~v~pg~------~~--~~-~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~ 185 (229)
T PLN02334 122 LNPG--T----PVEAVEPVVEKGLVDMVLVMSVEPGF------GG--QS-FIPSMMDKVRALRKKYPELDIEVDGGV-GP 185 (229)
T ss_pred ECCC--C----CHHHHHHHHhccCCCEEEEEEEecCC------Cc--cc-cCHHHHHHHHHHHHhCCCCcEEEeCCC-CH
Confidence 2211 1 124455555554 99994 44332 11 11 223466778888887657899999999 69
Q ss_pred HHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 217 KEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 217 ~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
+.+.++.+. +|+|.+|+++...++....++
T Consensus 186 e~i~~l~~aGad~vvvgsai~~~~d~~~~~~ 216 (229)
T PLN02334 186 STIDKAAEAGANVIVAGSAVFGAPDYAEVIS 216 (229)
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 999999988 999999999988777544443
No 343
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.45 E-value=0.0033 Score=68.62 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=96.5
Q ss_pred CCCEEEEecCCC---H----HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhc---cC
Q psy2378 63 EHPIAFQVGDNE---P----KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VE 132 (956)
Q Consensus 63 ~~p~~vQl~g~~---~----~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~ 132 (956)
+.++++.+.+.. | +.+...++.+.+.|+|.|++..= +|+. ..+.+.+.++++++. .+
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~----------~g~~---~~~~~~~~~~~v~~~~~~~g 139 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVN----------VGSE---TEAEMLEDLGEVAEECEEWG 139 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEe----------cCCh---hHHHHHHHHHHHHHHHHHcC
Confidence 455777665211 1 44555567788899999998420 1110 022244445555544 37
Q ss_pred ccEEEEecc-C--CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEE
Q psy2378 133 IDITVKHRI-G--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 209 (956)
Q Consensus 133 ~pv~vKir~-g--~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~ 209 (956)
+|+.+-... | .+...+.+.....++...+.|+|+|-.+ +. .+.+.++++.+.. ++||.+
T Consensus 140 ~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~--------~~---------~~~~~l~~~~~~~-~ipV~a 201 (267)
T PRK07226 140 MPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN--------YT---------GDPESFREVVEGC-PVPVVI 201 (267)
T ss_pred CcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC--------CC---------CCHHHHHHHHHhC-CCCEEE
Confidence 887763211 1 1111122345566788889999999443 11 2567788888765 699999
Q ss_pred ecCCC--CHHHHHHHh----hh-cCEEEEccccccCCcchHHH
Q psy2378 210 NGGIK--TKKEIDLHL----NY-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 210 nGgI~--s~~da~~~l----~~-ad~VmiGR~~l~~P~l~~~i 245 (956)
.|||+ +.+++.+++ +. |+|+.+||.++..|+....+
T Consensus 202 ~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 202 AGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAIT 244 (267)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHH
Confidence 99999 889888886 45 99999999999988844333
No 344
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.44 E-value=0.003 Score=65.99 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHH
Q psy2378 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVR 153 (956)
Q Consensus 75 ~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~ 153 (956)
.+.....++.+.+.|+|.||+.+ .+|...-.+.+.+.+-+.++++.+. .|+-+-+-.+.. +.++..
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~----------~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l---~~~~i~ 134 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVI----------NIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL---TDEEII 134 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEee----------cHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC---CHHHHH
Confidence 34555557788888999999964 2343334466777777788887774 444442222322 234578
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEEEecCCCCHHHHHHHhhh-cCE
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDG 228 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi~nGgI~s~~da~~~l~~-ad~ 228 (956)
..++...++|+|+|-...+. .+ +++..+.+..+++.+ ..+||-++|||.|.+++.+++.. ||-
T Consensus 135 ~a~ria~e~GaD~IKTsTG~------~~------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 135 KACEIAIEAGADFIKTSTGF------GP------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred HHHHHHHHhCCCEEEcCCCC------CC------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhh
Confidence 88999999999999876332 11 234555555554443 25899999999999999999876 653
No 345
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.44 E-value=0.001 Score=70.76 Aligned_cols=133 Identities=17% Similarity=0.339 Sum_probs=88.5
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc--
Q psy2378 66 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-- 141 (956)
Q Consensus 66 ~~vQl~g--~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 141 (956)
+-+|+.| ++.++..+. .++|++.|=+ |.+.. +|+++.++.+..-+ +-+++-.|-
T Consensus 74 ~pv~~gGGIrs~edv~~l----~~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g~ 131 (228)
T PRK04128 74 LKVQVGGGLRTYESIKDA----YEIGVENVII--------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGGR 131 (228)
T ss_pred CCEEEcCCCCCHHHHHHH----HHCCCCEEEE--------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCCe
Confidence 4467765 466665544 3468888755 44455 89999999887733 223333322
Q ss_pred ----CCCCCCcHHHHHHHHHHHHHcCCCEEEEc--ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC
Q psy2378 142 ----GIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 215 (956)
Q Consensus 142 ----g~~~~~~~~~~~~~a~~l~~~G~~~i~vh--~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s 215 (956)
||...... ...++++.+++. +..+.++ .|.+..+| .| ++.+.++++|||++|||.+
T Consensus 132 v~~~gw~~~~~~-~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G-----------~d-----~l~~~~~~~pviasGGv~~ 193 (228)
T PRK04128 132 IAVKGWLEESSI-KVEDAYEMLKNY-VNRFIYTSIERDGTLTG-----------IE-----EIERFWGDEEFIYAGGVSS 193 (228)
T ss_pred EecCCCeEcCCC-CHHHHHHHHHHH-hCEEEEEeccchhcccC-----------HH-----HHHHhcCCCCEEEECCCCC
Confidence 45432221 356888888888 8888776 34433333 23 3344434799999999999
Q ss_pred HHHHHHHhhh-cCEEEEccccccC
Q psy2378 216 KKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 216 ~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
.+|..++.+. +++|.+|+++...
T Consensus 194 ~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 194 AEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred HHHHHHHHHCCCCEEEEEhhhhcC
Confidence 9999999877 9999999988654
No 346
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.44 E-value=0.0017 Score=76.33 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHH
Q psy2378 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFV 156 (956)
Q Consensus 78 ~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a 156 (956)
..+.++.+.++|+|.|=|... .+. -..+.++++.+|+.. +.+|.+. +-. +.+-+
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a--------~~~-------~~~~~~~i~~ik~~~p~~~v~ag------nv~----t~~~a 282 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTA--------HGH-------QEKMLEALRAVRALDPGVPIVAG------NVV----TAEGT 282 (479)
T ss_pred HHHHHHHHHHhCCCEEEEecc--------CCc-------cHHHHHHHHHHHHHCCCCeEEee------ccC----CHHHH
Confidence 345555566678888766532 221 467889999999987 5777652 111 24668
Q ss_pred HHHHHcCCCEEEEccccc---ccccCCCCCCCCCCcCcHHHHHHHHH---hCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 157 GTVSSAGCRTFIVHARNA---FLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 157 ~~l~~~G~~~i~vh~r~~---~~~g~~~~~~~~~~~~~~~~i~~v~~---~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+.|.++|+|+|-|--+++ ..+++++. +..++..+.++++ .. ++|||+-|||.++.|+.++|.. ||+|
T Consensus 283 ~~l~~aGad~v~vgig~gsictt~~~~~~-----~~p~~~av~~~~~~~~~~-~~~via~ggi~~~~~~~~al~~ga~~v 356 (479)
T PRK07807 283 RDLVEAGADIVKVGVGPGAMCTTRMMTGV-----GRPQFSAVLECAAAAREL-GAHVWADGGVRHPRDVALALAAGASNV 356 (479)
T ss_pred HHHHHcCCCEEEECccCCcccccccccCC-----chhHHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHcCCCee
Confidence 889999999998743321 22333332 1247888888877 34 6999999999999999999998 9999
Q ss_pred EEccccccCCcch
Q psy2378 230 MLGREAYKNPFLM 242 (956)
Q Consensus 230 miGR~~l~~P~l~ 242 (956)
|+|..+.+-..-+
T Consensus 357 ~~g~~~ag~~Esp 369 (479)
T PRK07807 357 MIGSWFAGTYESP 369 (479)
T ss_pred eccHhhccCccCC
Confidence 9999887655443
No 347
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.43 E-value=0.00047 Score=73.56 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=74.1
Q ss_pred HHHHHHHHHH-cCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 152 VRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 152 ~~~~a~~l~~-~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
..++|+.+++ .|++.|+|---.+... ..+.+.+.++++.+.+ ++||..-|||.|.++++++++. ||-|
T Consensus 33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~---------~~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 33 AEESIAYYSQFECVNRIHIVDLIGAKA---------QHAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred HHHHHHHHHhccCCCEEEEEECccccc---------CCcchHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 4678999999 7999999863332111 1246899999999976 7999999999999999999998 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
.+|..++.||.+++++.+.+
T Consensus 103 vigt~a~~~~~~l~~~~~~f 122 (234)
T PRK13587 103 IVGTKGIQDTDWLKEMAHTF 122 (234)
T ss_pred EECchHhcCHHHHHHHHHHc
Confidence 99999999999999998754
No 348
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.42 E-value=0.0022 Score=67.64 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=106.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHcCCCE--EEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhc-cCccEEEEeccC
Q psy2378 66 IAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIG 142 (956)
Q Consensus 66 ~~vQl~g~~~~~~~~aA~~~~~~G~d~--IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~g 142 (956)
+..+|...|+..+.+..+.++++|+|. +|+-=|+=++|. .+| -++++++|+. ++.|+.|=+=..
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~---tfg----------~~~i~~i~~~~~~~~~dvHLMv~ 68 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL---TFG----------APICKALRDYGITAPIDVHLMVK 68 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc---ccC----------HHHHHHHHHhCCCCCEEEEeccC
Confidence 457889999999999999999999886 455445444442 222 3567888876 578877765431
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------------------------------------cccc
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLKK 178 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------------------------------------~~~g 178 (956)
+ ...+++.+.++|+|.|++|.-.. ...|
T Consensus 69 --~------p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PG 140 (220)
T PRK08883 69 --P------VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPG 140 (220)
T ss_pred --C------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCC
Confidence 1 34677888999999999984310 0112
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHhCC----CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHH
Q psy2378 179 LNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 179 ~~~~~~~~~~~~~~~~i~~v~~~~~----~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i 245 (956)
+.|. .+. +..++.++++++..+ ++||.+-|||+ .+.+.++.+. ||++.+|+++...++.-..+
T Consensus 141 fgGq--~fi-~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i 208 (220)
T PRK08883 141 FGGQ--SFI-PHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVI 208 (220)
T ss_pred CCCc--eec-HhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHH
Confidence 2211 111 234556777776542 48999999997 9999999988 99999999988766643333
No 349
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.41 E-value=0.011 Score=66.74 Aligned_cols=204 Identities=11% Similarity=0.056 Sum_probs=127.5
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccc--cce-eEEEecCCCCCCCCHHHHHHHHHHHHHHcc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILN--RKI-HTIFIGGGTPSLISDTGLDYLLKNIKKLLL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~--~~i-~~i~fgggtPs~L~~~~l~~ll~~i~~~~~ 698 (956)
..+-.|+..|.||.-.+. + ..+.-...++++++......+.. .++ .-++.|+|-|. ++.+.+.++++.+.+..+
T Consensus 115 SsQvGC~~~C~FCatg~~-g-~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL-~N~d~v~~~l~~l~~~~G 191 (356)
T PRK14462 115 SSQVGCKVGCAFCLTAKG-G-FVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPL-DNLDNVSKAIKIFSENDG 191 (356)
T ss_pred eccccCCCCCccCCCCCC-C-CcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccc-cCHHHHHHHHHHhcCccC
Confidence 445789999999954332 2 11222356666666543322211 112 34566788864 566777777777766422
Q ss_pred cC-CCceeEEEeCCCCCCHHHHHHHHHcCC-CeEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHH-HHhcCCe--eEE
Q psy2378 699 FK-KNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEI-AKQYFNN--FNL 770 (956)
Q Consensus 699 ~~-~~~eitle~np~~it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~-l~~~~~~--i~~ 770 (956)
++ ....+++++.- +. +.++.|.+.+. ..+.+.+-+.|++..+.+ ++.+..+++.++++. +++.+.. +..
T Consensus 192 l~~~~r~itVsTsG--~~-~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~iey 268 (356)
T PRK14462 192 LAISPRRQTISTSG--LA-SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEY 268 (356)
T ss_pred CCcCCCceEEECCC--Ch-HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 21 11355666522 22 35555666655 568888999999999876 566788889888864 4344544 445
Q ss_pred EEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 771 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 771 dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
=+|=|+ .++++++++..+++..++ .+|.+-+|.+.++.++ +.|+.+.. ....+.|.+.|..
T Consensus 269 vLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~------~~ps~e~i----~~f~~~l~~~gi~ 329 (356)
T PRK14462 269 LVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF------ERPSLEDM----IKFQDYLNSKGLL 329 (356)
T ss_pred EEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC------CCCCHHHH----HHHHHHHHHCCCc
Confidence 455553 678999999999999885 6999999998887654 34555442 2234556666654
No 350
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.40 E-value=0.0047 Score=65.32 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc------CCC-----------C
Q psy2378 83 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------GID-----------D 145 (956)
Q Consensus 83 ~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~-----------~ 145 (956)
+.+.+.|.|+|-| ||+.--..+.+.++++++|+ +++|+..--.- +.| +
T Consensus 26 ~~~~~~gtdai~v--------------GGS~~vt~~~~~~~v~~ik~-~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~ 90 (232)
T PRK04169 26 EAICESGTDAIIV--------------GGSDGVTEENVDELVKAIKE-YDLPVILFPGNIEGISPGADAYLFPSVLNSRN 90 (232)
T ss_pred HHHHhcCCCEEEE--------------cCCCccchHHHHHHHHHHhc-CCCCEEEeCCCccccCcCCCEEEEEEEecCCC
Confidence 5567789999988 55554457888999999998 88888764211 111 1
Q ss_pred CCc-HHHHHHHHHHHHHcCCCE-----EEEcccc--------c-----------------cccc----CCCCCCCCCCcC
Q psy2378 146 INS-YDFVRDFVGTVSSAGCRT-----FIVHARN--------A-----------------FLKK----LNPKQNRKIPIL 190 (956)
Q Consensus 146 ~~~-~~~~~~~a~~l~~~G~~~-----i~vh~r~--------~-----------------~~~g----~~~~~~~~~~~~ 190 (956)
... +..-.+.++.+...|... |.+.+.. . .+.| |......+..+.
T Consensus 91 ~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~ 170 (232)
T PRK04169 91 PYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPV 170 (232)
T ss_pred cchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCC
Confidence 110 012234555555555532 2332110 0 0011 001112233456
Q ss_pred cHHHHHHHHHhCCCc-eEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 191 KYNFVYNLKKDFPEL-EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 191 ~~~~i~~v~~~~~~i-pVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
+.+.++++++.+ ++ ||+..|||++++++++++.. ||+|.+|..+..||.
T Consensus 171 ~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 171 PPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 789999999987 67 99999999999999998888 999999999999998
No 351
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.40 E-value=0.00058 Score=72.90 Aligned_cols=89 Identities=16% Similarity=0.282 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++|+.+++.|++.++|.--.....| .+.+++.++++++.+ ++|+...|||.+.++++++++. ||.|
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g---------~~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~v 98 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEG---------GPVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRV 98 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC---------CCCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3678999999999999999754422111 135889999999987 7999999999999999999998 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
++|..++.||.++.++.+.+
T Consensus 99 vlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 99 IIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred EEChHHhhCHHHHHHHHHHh
Confidence 99999999999999888754
No 352
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=97.37 E-value=0.0057 Score=64.47 Aligned_cols=212 Identities=11% Similarity=0.044 Sum_probs=133.9
Q ss_pred CCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEE---ecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIF---IGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~---fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
=+.|-..|.||.+.+.....-...-...+.+.++...- ..-.+.++. +.||- ..++...++.|++.
T Consensus 77 G~~CTR~C~FC~V~~g~P~~lD~~EP~rvAeaV~~mgL--kyVViTsVdRDDL~DGG-----A~hfa~~i~~Ire~---- 145 (306)
T COG0320 77 GDICTRRCRFCDVKTGRPNPLDPDEPERVAEAVKDMGL--KYVVITSVDRDDLPDGG-----AQHFAECIRAIREL---- 145 (306)
T ss_pred cchhccCCCccccCCCCCCCCCCchHHHHHHHHHHhCC--CeEEEEeeccccccccc-----hHHHHHHHHHHHhh----
Confidence 37899999999986643222222223444444443211 001122221 22222 34677778888776
Q ss_pred CCceeEEEe-CCCCC-CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC--CeeEEEEeecC
Q psy2378 701 KNISITLEA-NPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF--NNFNLDLIYAL 776 (956)
Q Consensus 701 ~~~eitle~-np~~i-t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~--~~i~~dlI~Gl 776 (956)
.+..++|+ -|+-- .++.++.+.+++..-+.=-+|+.. ..-..++++.+.+.....++.+++.+ +.....+|+||
T Consensus 146 -~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVp-rL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGL 223 (306)
T COG0320 146 -NPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVP-RLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGL 223 (306)
T ss_pred -CCCceEEEeCccccCCHHHHHHHHhcCcchhhcccccch-hcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeec
Confidence 23667787 45533 577899999999777777777753 44456677888888888888888876 44567899998
Q ss_pred CCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCCCc
Q psy2378 777 PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYE 856 (956)
Q Consensus 777 PgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~yeis~far~g~~ 856 (956)
|||.+++.++++-+.+.+++.+.+-+|.- |. .-+ .+-.+....+ .|.+..+.-.+.||.+-..+-+.|..|.
T Consensus 224 -GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-PS-~~H-lpV~ryv~Pe----eF~~~~~~a~~~GF~~v~sgPlvRSSYh 295 (306)
T COG0320 224 -GETDEEVIEVMDDLRSAGVDILTIGQYLQ-PS-RKH-LPVQRYVTPE----EFDELEEVAEEMGFLHVASGPLVRSSYH 295 (306)
T ss_pred -CCcHHHHHHHHHHHHHcCCCEEEeccccC-Cc-ccc-CCceeccCHH----HHHHHHHHHHHccchhhccCcccccccc
Confidence 99999999999999999999999988753 21 110 1111122233 3555556677889986544445555443
No 353
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0061 Score=67.11 Aligned_cols=180 Identities=14% Similarity=0.080 Sum_probs=125.4
Q ss_pred CCCcceeeeeeecccccCCcch--------HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE--------KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKK 695 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~--------~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~ 695 (956)
--.|.+-|.||-.....+.... ...++.+-+|+.+. ..+...|+++..|-.+.+.+.-.++...+.+
T Consensus 36 y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~-----~~k~~~i~is~~TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 36 YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKP-----GPKRTVIAISSVTDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred cCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhc-----cCCceEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 3579999999976543332211 12334444444322 2335678899888888775555555555544
Q ss_pred HcccCCCceeEEEeCCCCC--CHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCeeEEEE
Q psy2378 696 LLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQYFNNFNLDL 772 (956)
Q Consensus 696 ~~~~~~~~eitle~np~~i--t~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~-R~~~~~~~~~ai~~l~~~~~~i~~dl 772 (956)
.+.. ....+++.+.-.-+ +-++|..++..+-.+|.+-+-+.++++.+.+- +..++++=.+|++.+.++|+.+.+.+
T Consensus 111 i~~~-~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v 189 (297)
T COG1533 111 ILLK-YGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFV 189 (297)
T ss_pred HHHH-cCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 4321 23466666633322 55778888888878899999999988888886 45688899999999999998777655
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCC
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPN 809 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pg 809 (956)
-==+|+.|.+++.+.+..+.+.++.++....+....+
T Consensus 190 ~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 190 APIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred ecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 5558999999999999999999999987776655443
No 354
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.34 E-value=0.0073 Score=63.33 Aligned_cols=205 Identities=9% Similarity=0.103 Sum_probs=121.8
Q ss_pred ccccccCCCceEEccCcCcCCHH-HHHHHHHcCCCcEEEecccccc-cccCCchhcccc-CCCCCCEEEEec-CCCHHHH
Q psy2378 3 MINSKYNKRKISIAPMMNLTDRH-CRMFHRQITRYSWLYTEMFTTQ-AILGNKKHCLDF-NAEEHPIAFQVG-DNEPKKL 78 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~~-fR~~~~~~g~~~l~~tem~~~~-~l~~~~~~~~~~-~~~~~p~~vQl~-g~~~~~~ 78 (956)
|++.+| ..|+++- -..|.+.. .+...++-| ++++-.-+=..+ ........++.. ...+..+...-. ..+.++.
T Consensus 10 i~g~~f-~SRL~lG-Tgky~s~~~~~~ai~aSg-~evvTvalRR~~~~~~~~~~~~l~~i~~~~~~~LPNTaGc~tA~EA 86 (267)
T CHL00162 10 IGNKSF-NSRLMLG-TGKYKSLKDAIQSIEASG-CEIVTVAIRRLNNNLLNDNSNLLNGLDWNKLWLLPNTAGCQTAEEA 86 (267)
T ss_pred ECCEEe-ecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEEEEeccCcCCCcchHHHhhchhccEECCcCcCCCCHHHH
Confidence 556677 7788654 34454444 444445555 555433221111 000111222222 222333333443 3578999
Q ss_pred HHHHHHHHHcC-------CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHH
Q psy2378 79 AKSAKIIQKWG-------YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 151 (956)
Q Consensus 79 ~~aA~~~~~~G-------~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 151 (956)
+..|+++++++ -++|-|-. ..| --.|+-|+-...+-.+.+.+. |+-|..-+. + +
T Consensus 87 v~~A~laRe~~~~~~~~~~~wIKLEV-------i~D--~~~LlPD~~etl~Aae~Lv~e-GF~VlPY~~---~--D---- 147 (267)
T CHL00162 87 IRMAFLGRELAKQLGQEDNNFVKLEV-------ISD--PKYLLPDPIGTLKAAEFLVKK-GFTVLPYIN---A--D---- 147 (267)
T ss_pred HHHHHHHHHHhccccccCCCeEEEEE-------eCC--CcccCCChHHHHHHHHHHHHC-CCEEeecCC---C--C----
Confidence 99999999874 46665531 212 134666665555444444432 444433222 1 1
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
.-+|++|+++|+.+|---+-. -....+..+...++.+++.. ++|||.-+||.+++|+.++++- ||+|.
T Consensus 148 -~v~a~rLed~Gc~aVMPlgsP---------IGSg~Gl~n~~~l~~i~e~~-~vpVivdAGIgt~sDa~~AmElGaDgVL 216 (267)
T CHL00162 148 -PMLAKHLEDIGCATVMPLGSP---------IGSGQGLQNLLNLQIIIENA-KIPVIIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred -HHHHHHHHHcCCeEEeeccCc---------ccCCCCCCCHHHHHHHHHcC-CCcEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 257999999999999653321 11112345778888888875 7999999999999999999998 99999
Q ss_pred EccccccCCc
Q psy2378 231 LGREAYKNPF 240 (956)
Q Consensus 231 iGR~~l~~P~ 240 (956)
+..|...-++
T Consensus 217 ~nSaIakA~d 226 (267)
T CHL00162 217 LNTAVAQAKN 226 (267)
T ss_pred ecceeecCCC
Confidence 9999875443
No 355
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.33 E-value=0.0077 Score=62.94 Aligned_cols=151 Identities=16% Similarity=0.207 Sum_probs=94.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
..+++.=|.+.++++..+.++.+.+.|+..||+-+-.|. ..+.++.+++..+.++.|- .|
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~------------------~~~~i~~l~~~~~~~~~iG--aG 68 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD------------------PFDSIAALVKALGDRALIG--AG 68 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc------------------HHHHHHHHHHHcCCCcEEe--EE
Confidence 456777789999999999999999999999999653331 2235555555554333322 22
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------------------ccccCCCCCCCCCCcCcHHHHH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------FLKKLNPKQNRKIPILKYNFVY 196 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------------------~~~g~~~~~~~~~~~~~~~~i~ 196 (956)
.-- ..+-++...++|+++++.-.-+. ...|..-..-+......+++++
T Consensus 69 TV~------~~~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~ 142 (206)
T PRK09140 69 TVL------SPEQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIK 142 (206)
T ss_pred ecC------CHHHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 110 01223444455555554311000 0000000000011235688999
Q ss_pred HHHHhCC-CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 197 NLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 197 ~v~~~~~-~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
.+++.+| ++|+++.||| +++.+.++++. +|+|.+++++....+
T Consensus 143 ~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~ 187 (206)
T PRK09140 143 ALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQ 187 (206)
T ss_pred HHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccccc
Confidence 9998885 6999999999 79999999998 999999999976433
No 356
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.29 E-value=0.012 Score=65.23 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=102.8
Q ss_pred HHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCC
Q psy2378 649 LEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGIN 728 (956)
Q Consensus 649 v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~ 728 (956)
.+.+++++......+. .....|.|.||-|+. .++.+.++++.+++. + ..+++.+|-.. ..+.++.+.. .++
T Consensus 108 ~eel~~~i~~~~~~~~-~~~~~V~~sGGEPll-~~~~l~~l~~~~k~~-g----~~~~i~TnG~~-~~~~~~~ll~-~~d 178 (295)
T TIGR02494 108 VEEVMRVVLRDSIFYR-NSGGGVTLSGGEPLL-QPEFALALLQACHER-G----IHTAVETSGFT-PWETIEKVLP-YVD 178 (295)
T ss_pred HHHHHHHHHHHHHhcc-cCCCcEEeeCcchhc-hHHHHHHHHHHHHHc-C----CcEeeeCCCCC-CHHHHHHHHh-hCC
Confidence 3445555543322111 123468899999885 556667788887664 2 35667776543 3455554443 357
Q ss_pred eEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEE--EeecCCCCCHHHHHHHHHHHHccC--CCeEEEEee
Q psy2378 729 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLD--LIYALPNQTLSELMLDLNYAIQYS--PPHLSLYSL 804 (956)
Q Consensus 729 risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~d--lI~GlPgqT~e~~~~tl~~~~~l~--~~~i~~y~l 804 (956)
.+.+.+.+.+++..+.+.. .+.+.+.+.++.+.+.+..+.+- +|-|+ ..+.+++.+.++++.+++ +..+.+.++
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~~~~~v~~v~l~~~ 256 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGF-NDSEENIEAIAAFLRKLEPGVDEIDLLPY 256 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCc-CCCHHHHHHHHHHHHHhccCCceEEecCC
Confidence 7888999999988877744 46688889999998876555444 34343 367789999999999998 678888888
Q ss_pred eccCCccc
Q psy2378 805 TIEPNTYF 812 (956)
Q Consensus 805 ~~~pgT~l 812 (956)
.+.+..+.
T Consensus 257 ~~~g~~~~ 264 (295)
T TIGR02494 257 HRLGENKY 264 (295)
T ss_pred CchhHHHH
Confidence 88776664
No 357
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.29 E-value=0.014 Score=65.57 Aligned_cols=202 Identities=11% Similarity=-0.020 Sum_probs=119.9
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEE-EecCCCCCCCCHHHHHHHHHHHHHH--cc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTI-FIGGGTPSLISDTGLDYLLKNIKKL--LL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i-~fgggtPs~L~~~~l~~ll~~i~~~--~~ 698 (956)
..+-.|+..|.||.-.+. +.. +.....+++.++.......+ .++..| |+|-|-|.+ +-+.+.+.++.+... ++
T Consensus 110 SsQvGC~m~C~FC~tg~~-g~~-rnlta~EI~~qv~~~~~~~~-~~~~niVFmGmGEPL~-N~d~V~~~~~~l~~~~~~~ 185 (342)
T PRK14465 110 SSQIGCTLNCKFCATAKL-EFQ-GNLKAHEIVDQVLQVEKIVG-DRATNVVFMGMGEPMH-NYFNVIRAASILHDPDAFN 185 (342)
T ss_pred EecCCCCCCCCCCcCCCC-Ccc-CCCCHHHHHHHHHHHHHhcC-CCceEEEEEcCCcchh-hHHHHHHHHHHHhChhhhc
Confidence 345799999999976542 211 11123344444432222122 224444 455499754 434455555555443 22
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHHHH-hcCCeeEEEE--
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAK-QYFNNFNLDL-- 772 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~l~-~~~~~i~~dl-- 772 (956)
+.. ..+|+.+ .-+.+...++..+..-..+++.+-+-+++....+ ++.++.+++.++++... +.+..+.+-.
T Consensus 186 ~~~-r~itvST--~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvL 262 (342)
T PRK14465 186 LGA-KRITIST--SGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVM 262 (342)
T ss_pred CCC-CeEEEeC--CCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 222 3566554 3344555555444433479999999999999887 78889999999998554 4455555443
Q ss_pred eecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 773 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 773 I~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
|=|+ .++.|++.+..+++..++ .++.+-+|.+. + ..++.|+.+...+ ..+.|.+.|+.
T Consensus 263 I~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~~-~------~~~~~ps~e~i~~----F~~~L~~~Gi~ 320 (342)
T PRK14465 263 IPGV-NMGRENANKLVKIARSLD-CKINVIPLNTE-F------FGWRRPTDDEVAE----FIMLLEPAGVP 320 (342)
T ss_pred ECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCCC-C------CCCCCCCHHHHHH----HHHHHHHCCCe
Confidence 3343 367899999999999886 67888887772 2 2345566554332 33456666654
No 358
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.19 E-value=0.011 Score=63.24 Aligned_cols=155 Identities=8% Similarity=0.054 Sum_probs=105.5
Q ss_pred CcCcCCHHHHHHHHHcCCCcEEEecccccccccCC-------chhccc----c--CCCCCCEEEEe---cCCCHHHHHHH
Q psy2378 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-------KKHCLD----F--NAEEHPIAFQV---GDNEPKKLAKS 81 (956)
Q Consensus 18 M~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~-------~~~~~~----~--~~~~~p~~vQl---~g~~~~~~~~a 81 (956)
|.+.-|.+.-+++.+.| ++.+++.--......|. ...++. + .-...|+++=+ +|.+|++..+.
T Consensus 16 ~~~ayD~~sA~i~e~aG-~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 16 TLTAYDYSMAKQFADAG-LNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred EecCCCHHHHHHHHHcC-CCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 55778899989888887 67777663222111121 111111 1 11235888877 46678999999
Q ss_pred HHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCC-------------CCCCc
Q psy2378 82 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI-------------DDINS 148 (956)
Q Consensus 82 A~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-------------~~~~~ 148 (956)
++++.++|+++|.|--+ ....+.+++++++ ++||...+...+ .....
T Consensus 95 ~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 95 AKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 99999999999999532 1244567777765 588887765421 11223
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecC
Q psy2378 149 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG 212 (956)
Q Consensus 149 ~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGg 212 (956)
.+++++-++.++++|+|.|-+++. +.+.++++.+.+ ++|+++||.
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~------------------~~e~~~~i~~~~-~~P~~~~ga 199 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV------------------PVELAKQITEAL-AIPLAGIGA 199 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC------------------CHHHHHHHHHhC-CCCEEEEec
Confidence 567788899999999999998742 567889999987 799998875
No 359
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.17 E-value=0.02 Score=59.85 Aligned_cols=181 Identities=8% Similarity=0.131 Sum_probs=107.7
Q ss_pred cCcCCHHHHHHHHHcCCCcEE-Eecc-cccccc-cCCchhccccCCC-CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEE
Q psy2378 19 MNLTDRHCRMFHRQITRYSWL-YTEM-FTTQAI-LGNKKHCLDFNAE-EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEIN 94 (956)
Q Consensus 19 ~~~td~~fR~~~~~~g~~~l~-~tem-~~~~~l-~~~~~~~~~~~~~-~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~Ie 94 (956)
+|+++..--..+.+.| ++++ +-.. -|.+.+ ......+....+. -.++.+ +...++++..+. +.+.|+|+|.
T Consensus 4 CGi~~~ed~~~a~~~G-vd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v-~vn~~~~~i~~i---a~~~~~d~Vq 78 (203)
T cd00405 4 CGITTLEDALAAAEAG-ADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGV-FVNEDLEEILEI---AEELGLDVVQ 78 (203)
T ss_pred CCCCCHHHHHHHHHcC-CCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEE-EeCCCHHHHHHH---HHhcCCCEEE
Confidence 6777777666777777 4443 1111 233333 1112223333322 133333 234455555555 4567999999
Q ss_pred ecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc
Q psy2378 95 LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA 174 (956)
Q Consensus 95 iN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~ 174 (956)
||..- ++ +.++.+++..+.++...+...... ..+. ......|+|++.+...+.
T Consensus 79 lhg~e----------------~~----~~~~~l~~~~~~~~i~~i~~~~~~------~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 79 LHGDE----------------SP----EYCAQLRARLGLPVIKAIRVKDEE------DLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred ECCCC----------------CH----HHHHHHHhhcCCcEEEEEecCChh------hHHH-hhhccccCCEEEEcCCCC
Confidence 97321 12 335666666677776445543221 1122 233457899998876553
Q ss_pred ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCcc
Q psy2378 175 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFL 241 (956)
Q Consensus 175 ~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~l 241 (956)
...| ..-.+.+|+.+.+++ . ++|+++.||| +++.+.++++. +++|-+.+++...|-.
T Consensus 132 ~~~G------g~g~~~~~~~l~~~~--~-~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 132 GGGG------GTGKTFDWSLLRGLA--S-RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCC------CCcceEChHHhhccc--c-CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 1111 112357999998876 3 6899999999 89999999986 8999999999887764
No 360
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.16 E-value=0.00051 Score=73.15 Aligned_cols=88 Identities=18% Similarity=0.329 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++|+.+++.|++.+++.--++...| .+.+++.++++.+.+ .+||..-|||.|.++++++++. ||-|.
T Consensus 31 P~~~a~~~~~~g~~~l~ivDLdaa~~g---------~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vv 100 (229)
T PF00977_consen 31 PVEVAKAFNEQGADELHIVDLDAAKEG---------RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVV 100 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEEHHHHCCT---------HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEccCcccC---------chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEE
Confidence 578999999999999998633221111 135889999999998 6999999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|..++.||.++.++.+.+
T Consensus 101 igt~~~~~~~~l~~~~~~~ 119 (229)
T PF00977_consen 101 IGTEALEDPELLEELAERY 119 (229)
T ss_dssp ESHHHHHCCHHHHHHHHHH
T ss_pred eChHHhhchhHHHHHHHHc
Confidence 9999999999999998754
No 361
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.16 E-value=0.0011 Score=70.60 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEE
Q psy2378 153 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 231 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vmi 231 (956)
.+.|+..++.|+++|||--= | .+ +++.++++.+.+ ++||...|||++ ++++++++. ||.|.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEE
Confidence 68999999999999998531 1 13 889999999987 799999999997 999999999 999999
Q ss_pred ccccccC----CcchHHHHHhh
Q psy2378 232 GREAYKN----PFLMSNFDLNY 249 (956)
Q Consensus 232 GR~~l~~----P~l~~~i~~~~ 249 (956)
|..++.| |.+++++.+.+
T Consensus 104 GS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 104 TSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred CcHHHhCCCCCHHHHHHHHHHh
Confidence 9999998 77888888744
No 362
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.15 E-value=0.0073 Score=63.34 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=95.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcce-----eeeC-------cccccccCChHHHH---------
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----VQNG-------FFGAILMTKPLLVS--------- 121 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~-----~~~~-------~~G~~l~~~~~~~~--------- 121 (956)
..+++.=|.+.++++....++.+.+.|+..|||-+-.|..- .++. --|+.-.-+++.+.
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 45777778999999999999999999999999976554210 0000 01222222333332
Q ss_pred --------HHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHH
Q psy2378 122 --------DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 193 (956)
Q Consensus 122 --------eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~ 193 (956)
++++..++ .++|+.- |. .+ ..++ ....++|+|.|-+.... ....+
T Consensus 92 ivsP~~~~~v~~~~~~-~~i~~iP----G~---~T---~~E~-~~A~~~Gad~vklFPa~---------------~~G~~ 144 (213)
T PRK06552 92 IVSPSFNRETAKICNL-YQIPYLP----GC---MT---VTEI-VTALEAGSEIVKLFPGS---------------TLGPS 144 (213)
T ss_pred EECCCCCHHHHHHHHH-cCCCEEC----Cc---CC---HHHH-HHHHHcCCCEEEECCcc---------------cCCHH
Confidence 22222221 1333221 11 11 1233 33456889988875422 13467
Q ss_pred HHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 194 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 194 ~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
+++.++..+|++|+++.|||+ .+.+.++++. +++|.+|..+..
T Consensus 145 ~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred HHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 899999988889999999995 8999999998 999999998853
No 363
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.15 E-value=0.003 Score=67.98 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=97.9
Q ss_pred EEEEecCC--CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCc------cccccc--CChHHHHHHHHHHh-hccCcc
Q psy2378 66 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMR-DSVEID 134 (956)
Q Consensus 66 ~~vQl~g~--~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~------~G~~l~--~~~~~~~eiv~~v~-~~~~~p 134 (956)
++.=|... +.+.+.++++.+.+.|+|.|||-+ |.+.-..|| .--+|. -+.+.+.++++.+| +..++|
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGI--PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 55555544 558999999999999999999953 443333333 111111 25788889999999 777899
Q ss_pred EEEEecc------CCC----------------CCCcHHHHHHHHHHHHHcCCCEEEEccc-cc-----------------
Q psy2378 135 ITVKHRI------GID----------------DINSYDFVRDFVGTVSSAGCRTFIVHAR-NA----------------- 174 (956)
Q Consensus 135 v~vKir~------g~~----------------~~~~~~~~~~~a~~l~~~G~~~i~vh~r-~~----------------- 174 (956)
+.+=.-. |.+ .+.+.++..++...+.+.|++.|.+-.- |.
T Consensus 90 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~ 169 (259)
T PF00290_consen 90 IVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYL 169 (259)
T ss_dssp EEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEE
T ss_pred EEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEe
Confidence 8664321 211 0112233344444455555555443211 10
Q ss_pred -ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccc
Q psy2378 175 -FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 236 (956)
Q Consensus 175 -~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l 236 (956)
...|.+|.... .+..--+.++++|+.. ++||..-=||.++++++++...||||.+|.+++
T Consensus 170 vs~~GvTG~~~~-~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa~v 230 (259)
T PF00290_consen 170 VSRMGVTGSRTE-LPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLAAGADGVIVGSAFV 230 (259)
T ss_dssp ESSSSSSSTTSS-CHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHHTTSSEEEESHHHH
T ss_pred eccCCCCCCccc-chHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHHccCCEEEECHHHH
Confidence 11233332111 0111136788899887 899998889999999999995599999999753
No 364
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.14 E-value=0.014 Score=63.93 Aligned_cols=159 Identities=10% Similarity=0.190 Sum_probs=97.5
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe-c
Q psy2378 63 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-R 140 (956)
Q Consensus 63 ~~p~~vQl~-g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-r 140 (956)
.-|++++|= |.+.+ .++.+-+.||+.|.+=. .......+.+...++++-.++ .++||-..+ .
T Consensus 74 ~vpv~lHlDH~~~~e----~i~~Al~~G~tsVm~d~-----------s~~~~~eni~~t~~v~~~a~~-~gv~veaE~gh 137 (281)
T PRK06806 74 KVPVAVHFDHGMTFE----KIKEALEIGFTSVMFDG-----------SHLPLEENIQKTKEIVELAKQ-YGATVEAEIGR 137 (281)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCEEEEcC-----------CCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 457777774 33433 22234456777777732 122233444555555444443 377776553 3
Q ss_pred cCCCCC------CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec--C
Q psy2378 141 IGIDDI------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--G 212 (956)
Q Consensus 141 ~g~~~~------~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG--g 212 (956)
+|..+. .+.-+..+..+..++.|+|+|.+.-++. .|.. ...++.+++.++++++.+ ++|+++-| |
T Consensus 138 lG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~--hg~~----~~~~~l~~~~L~~i~~~~-~iPlV~hG~SG 210 (281)
T PRK06806 138 VGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNA--HGMY----NGDPNLRFDRLQEINDVV-HIPLVLHGGSG 210 (281)
T ss_pred ECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCC--CCCC----CCCCccCHHHHHHHHHhc-CCCEEEECCCC
Confidence 342211 1111234444445678999999976652 1111 123568999999999988 79999999 9
Q ss_pred CCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 213 IKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 213 I~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
| +.+++.++++. ++.|-+.+++..+ +.+.+++
T Consensus 211 I-~~e~~~~~i~~G~~kinv~T~i~~a--~~~a~~~ 243 (281)
T PRK06806 211 I-SPEDFKKCIQHGIRKINVATATFNS--VITAVNN 243 (281)
T ss_pred C-CHHHHHHHHHcCCcEEEEhHHHHHH--HHHHHHH
Confidence 8 58889999988 9999999999885 3344444
No 365
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.012 Score=60.86 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=111.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHcCCCEEEe--cCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 64 ~p~~vQl~g~~~~~~~~aA~~~~~~G~d~Iei--N~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
.++..+|...|...+.+-.+.+.++|+|.|-+ -=|.=++|.+ +=-.+++++++.+..|+.|=+=.
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiT-------------fGp~~v~~l~~~t~~p~DvHLMV 70 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNIT-------------FGPPVVKALRKITDLPLDVHLMV 70 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcc-------------cCHHHHHHHhhcCCCceEEEEec
Confidence 46889999999999999999999999997655 3333333433 22467888998888999887654
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------------------------------------ccc
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLK 177 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------------------------------------~~~ 177 (956)
- +...+++.+.++|+|.|++|.-.. ...
T Consensus 71 ~--------~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 71 E--------NPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred C--------CHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 2 134678889999999999984210 011
Q ss_pred cCCCCCCCCCCcCcHHHHHHHHHhCC---CceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 178 KLNPKQNRKIPILKYNFVYNLKKDFP---ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 178 g~~~~~~~~~~~~~~~~i~~v~~~~~---~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
|+.|+ ... |.-++-++++++... ++-+-.-||| +.+.+.++.+. ||.+..|+++..++|+-..++.
T Consensus 143 GfgGQ--~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 143 GFGGQ--KFI-PEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred CCccc--ccC-HHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHH
Confidence 22221 111 223456777776653 3456688998 58889999877 9999999999999995555543
No 366
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.12 E-value=0.015 Score=60.58 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEE-ecc
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK-HRI 141 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK-ir~ 141 (956)
+.|+++.+.-.++..+ -++.+.++|+|+|=+|... .++.+.++++.+++. ++++.+= +..
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~~-g~~~~v~~~~~ 113 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKKY-GKEVQVDLIGV 113 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence 6788888776666532 2355678999999998532 134567788888763 6555432 222
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEc-ccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 220 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh-~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~ 220 (956)
.. ..+..+ +.+.|+|++.++ +++. +..+ .+...+.++++++.. ++|+++.|||+ ++++.
T Consensus 114 --~t------~~e~~~-~~~~~~d~v~~~~~~~~---~~~~------~~~~~~~i~~~~~~~-~~~i~~~GGI~-~~~i~ 173 (202)
T cd04726 114 --ED------PEKRAK-LLKLGVDIVILHRGIDA---QAAG------GWWPEDDLKKVKKLL-GVKVAVAGGIT-PDTLP 173 (202)
T ss_pred --CC------HHHHHH-HHHCCCCEEEEcCcccc---cccC------CCCCHHHHHHHHhhc-CCCEEEECCcC-HHHHH
Confidence 11 224444 677899999885 3321 1000 134567788888764 79999999995 99999
Q ss_pred HHhhh-cCEEEEccccccCCcchHHH
Q psy2378 221 LHLNY-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 221 ~~l~~-ad~VmiGR~~l~~P~l~~~i 245 (956)
++++. +|+|.+|+++...++....+
T Consensus 174 ~~~~~Gad~vvvGsai~~~~d~~~~~ 199 (202)
T cd04726 174 EFKKAGADIVIVGRAITGAADPAEAA 199 (202)
T ss_pred HHHhcCCCEEEEeehhcCCCCHHHHH
Confidence 99988 99999999998776654433
No 367
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.10 E-value=0.034 Score=57.65 Aligned_cols=200 Identities=17% Similarity=0.219 Sum_probs=127.3
Q ss_pred eEEccCcCcC----------CHHHHHH-HHHcCCCcEEEecccccccccCC--chh--cc-----c-cCCCCCCEEEEec
Q psy2378 13 ISIAPMMNLT----------DRHCRMF-HRQITRYSWLYTEMFTTQAILGN--KKH--CL-----D-FNAEEHPIAFQVG 71 (956)
Q Consensus 13 i~lAPM~~~t----------d~~fR~~-~~~~g~~~l~~tem~~~~~l~~~--~~~--~~-----~-~~~~~~p~~vQl~ 71 (956)
+.|.|+=|-. |...|.. ..+-||+|-++-|-..+-.+..+ ... .+ . ...-..|+++.+.
T Consensus 14 vHL~PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVL 93 (263)
T COG0434 14 VHLLPLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVL 93 (263)
T ss_pred EecCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeee
Confidence 3467775533 4455543 24557799999887666655421 110 11 0 1345789999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccCCCCCCcH
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSY 149 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~ 149 (956)
-||+-.. ..++...|+|.|-+|.-|-.. .++ . |-++-+...+.+.-..+...+. -.+-||........+
T Consensus 94 rNd~vaA---~~IA~a~gA~FIRVN~~tg~~--~td-q-Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~-- 164 (263)
T COG0434 94 RNDAVAA---LAIAYAVGADFIRVNVLTGAY--ATD-Q-GIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRS-- 164 (263)
T ss_pred ccccHHH---HHHHHhcCCCEEEEEeeeceE--ecc-c-ceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcC--
Confidence 9887543 334556799999999765421 122 1 2344445555555555553332 234455444333322
Q ss_pred HHHHHHHHH-HHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhhcCE
Q psy2378 150 DFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG 228 (956)
Q Consensus 150 ~~~~~~a~~-l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~ 228 (956)
+.+.++- ++..++|++.++|... | .+.|.+.++.+++.+ ++||+.+-|+ +++.+.+++..|||
T Consensus 165 --~~~~v~dtver~~aDaVI~tG~~T---G---------~~~d~~el~~a~~~~-~~pvlvGSGv-~~eN~~~~l~~adG 228 (263)
T COG0434 165 --LEEAVKDTVERGLADAVIVTGSRT---G---------SPPDLEELKLAKEAV-DTPVLVGSGV-NPENIEELLKIADG 228 (263)
T ss_pred --HHHHHHHHHHccCCCEEEEecccC---C---------CCCCHHHHHHHHhcc-CCCEEEecCC-CHHHHHHHHHHcCc
Confidence 3344444 8889999999998752 1 147999999999988 5999998888 69999999988999
Q ss_pred EEEcccccc
Q psy2378 229 VMLGREAYK 237 (956)
Q Consensus 229 VmiGR~~l~ 237 (956)
+.+|..+=.
T Consensus 229 ~IvgT~lK~ 237 (263)
T COG0434 229 VIVGTSLKK 237 (263)
T ss_pred eEEEEEEcc
Confidence 999986533
No 368
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.06 E-value=0.0021 Score=68.76 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++|+.+++.|++.++|--=++...| .+.+++.++++.+.+ +||..-|||.|.++++++++. ||-|.
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a~~g---------~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKAIEN---------SVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcccC---------CcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 578999999999999998532210111 136899999999876 699999999999999999998 99999
Q ss_pred EccccccCCcchHHHHH
Q psy2378 231 LGREAYKNPFLMSNFDL 247 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~ 247 (956)
+|..++.||.+++++.+
T Consensus 101 igT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 101 VSSKVLEDPSFLKFLKE 117 (241)
T ss_pred ECchhhCCHHHHHHHHH
Confidence 99999999999999943
No 369
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.05 E-value=0.016 Score=66.07 Aligned_cols=145 Identities=12% Similarity=0.168 Sum_probs=103.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
+.++.+-|--.|+..+. ++.+.++|+|.+-+|+..+ .+.+.+.++.+++. |+-+.+- -++
T Consensus 226 ~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD-~ln 285 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILD-MLN 285 (391)
T ss_pred CCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEE-EcC
Confidence 56799999999999886 6667789999999996432 34567778888764 5444331 111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 222 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~ 222 (956)
.. . ..+.++.+ ..++|.+.+|.... .+ .. +..|+.++++++...+++|...|||+ ++++.++
T Consensus 286 p~--t----p~e~i~~l-~~~vD~Vllht~vd--p~-------~~-~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l 347 (391)
T PRK13307 286 VE--D----PVKLLESL-KVKPDVVELHRGID--EE-------GT-EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEA 347 (391)
T ss_pred CC--C----HHHHHHHh-hCCCCEEEEccccC--CC-------cc-cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHH
Confidence 11 1 23555666 67899999995321 11 01 23677888888865578999999997 9999999
Q ss_pred hhh-cCEEEEccccccCCcchHHH
Q psy2378 223 LNY-IDGVMLGREAYKNPFLMSNF 245 (956)
Q Consensus 223 l~~-ad~VmiGR~~l~~P~l~~~i 245 (956)
++. +|.+.+||++...++....+
T Consensus 348 ~~aGADivVVGsaIf~a~Dp~~aa 371 (391)
T PRK13307 348 LKAGADILVVGRAITKSKDVRRAA 371 (391)
T ss_pred HHcCCCEEEEeHHHhCCCCHHHHH
Confidence 887 99999999988776644333
No 370
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.05 E-value=0.0082 Score=64.15 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEE--eccCCCCCCcHHHH
Q psy2378 75 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK--HRIGIDDINSYDFV 152 (956)
Q Consensus 75 ~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK--ir~g~~~~~~~~~~ 152 (956)
.+.=..-|+.+.+.|+|.||+=+ .+|.-+..+.+.+.+-+++|++.++-++.+| +-.+.-..+ ++.
T Consensus 82 t~~K~~Ea~~Ai~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e--e~i 149 (257)
T PRK05283 82 IDIALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE--ALI 149 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH--HHH
Confidence 34344445567778999999832 2455556688999999999998875234445 444432221 135
Q ss_pred HHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC------CCceEEEecCCCCHHHHHHHhhh
Q psy2378 153 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNY 225 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~------~~ipVi~nGgI~s~~da~~~l~~ 225 (956)
...++...++|+|+|--+.+. .+ +++..+.++-+++.+ .++-|=++|||.|.++|.++++.
T Consensus 150 ~~a~~~a~~aGADFVKTSTGf------~~------~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a 216 (257)
T PRK05283 150 RKASEIAIKAGADFIKTSTGK------VP------VNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL 216 (257)
T ss_pred HHHHHHHHHhCCCEEEcCCCC------CC------CCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH
Confidence 678889999999999765442 11 124555555554443 24778899999999999999975
No 371
>PRK08005 epimerase; Validated
Probab=97.04 E-value=0.02 Score=59.79 Aligned_cols=156 Identities=12% Similarity=0.154 Sum_probs=104.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHcCCCEE--EecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCC
Q psy2378 66 IAFQVGDNEPKKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 143 (956)
Q Consensus 66 ~~vQl~g~~~~~~~~aA~~~~~~G~d~I--eiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 143 (956)
+..+|.+.|+..+.+..+.++++|+|.| |+-=|.=++| .-+=-++++++|+.++.|+.|=+=..
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN-------------~tfG~~~i~~l~~~t~~~~DvHLMv~- 68 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINN-------------ITFGMKTIQAVAQQTRHPLSFHLMVS- 68 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-------------cccCHHHHHHHHhcCCCCeEEEeccC-
Confidence 5689999999999999999999998864 4433433333 22224567888877778877655431
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------c------------------------------cccC
Q psy2378 144 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------F------------------------------LKKL 179 (956)
Q Consensus 144 ~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------~------------------------------~~g~ 179 (956)
+ ...+++.+.++|+|.|++|.-.. . ..|+
T Consensus 69 -~------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf 141 (210)
T PRK08005 69 -S------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDG 141 (210)
T ss_pred -C------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCC
Confidence 1 24677888899999999984310 0 0111
Q ss_pred CCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 180 ~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
.|+ .+. +.-++-++++++..+...+-.=|||+ .+.+.++.+. ||.+.+|+++..+++.-+.++
T Consensus 142 ~GQ--~f~-~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~ 205 (210)
T PRK08005 142 RGQ--QFI-AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTANYDVTLS 205 (210)
T ss_pred ccc--eec-HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCHHHHHH
Confidence 111 011 12234566666655445688999995 8889888888 999999999988777544443
No 372
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=97.03 E-value=0.048 Score=61.56 Aligned_cols=203 Identities=10% Similarity=-0.016 Sum_probs=123.4
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHH--cc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKL--LL 698 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~--~~ 698 (956)
..+-.|+..|.||.-.+. +. .+.-..+++++++...... ..+++.|-|.| |-|..- .+ +...++.+.+. ++
T Consensus 105 ssqvGC~~~C~FC~tg~~-g~-~rnLt~~EIv~qv~~~~~~--~~~i~~IvfmGmGEPLln-~~-v~~~i~~l~~~~~~~ 178 (347)
T PRK14453 105 SSQCGCGFGCRFCATGSI-GL-KRNLTADEITDQLLYFYLN--GHRLDSISFMGMGEALAN-PE-LFDALKILTDPNLFG 178 (347)
T ss_pred ecCCCcCCCCCCCCCCCC-CC-cccCCHHHHHHHHHHHHhc--CCCcceEEEeecCCccCC-HH-HHHHHHHHhcccccC
Confidence 457889999999976542 21 1222345566666533221 23477788888 998764 43 55555555542 22
Q ss_pred cCCCceeEEEeCCCCCCHHHHHHHHH-cCCCeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHHH-HhcCC--eeEEE
Q psy2378 699 FKKNISITLEANPSTFEIEKFHSYSI-IGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIA-KQYFN--NFNLD 771 (956)
Q Consensus 699 ~~~~~eitle~np~~it~e~L~~L~~-~Gv~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~l-~~~~~--~i~~d 771 (956)
++ ...++++++- +.+ .++.+.+ ..-..+.+-+-+.+++..+.+- +.+..+++.++++.. .+.+. .+.+=
T Consensus 179 ~~-~r~itVsT~G--~~~-~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~ 254 (347)
T PRK14453 179 LS-QRRITISTIG--IIP-GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYI 254 (347)
T ss_pred CC-CCcEEEECCC--Cch-hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 22 2457777643 222 1233333 3335677788999888876653 556777777766443 33343 45666
Q ss_pred EeecCCCCCHHHHHHHHHHHHccC----CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYS----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~----~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+|=|+ .++.+++++.++++..++ +.+|.+-+|.+.++.+. .++.|+.+. .....+.|.+.|+.
T Consensus 255 LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~----~~~~ps~e~----v~~f~~~L~~~Gi~ 321 (347)
T PRK14453 255 MLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPF----KFQSSSAGQ----IKQFCSTLKSAGIS 321 (347)
T ss_pred eECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCc----cCCCCCHHH----HHHHHHHHHHCCCc
Confidence 66665 578889999999999874 67899989888776321 234455544 33344567777765
No 373
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.02 E-value=0.0029 Score=67.95 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..+.++..++.|+..++|.-=.... ..+.+.+.++++.+.+ .+||..-|||.|.++++.+++. ||-|+
T Consensus 33 p~~~a~~~~~~g~~~lhivDLd~a~----------g~~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vv 101 (243)
T TIGR01919 33 LESAAKWWEQGGAEWIHLVDLDAAF----------GGGNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVN 101 (243)
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCC----------CCcchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEE
Confidence 5678888999999999986322100 1135889999999988 6999999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|..++.||+++.++.+.+
T Consensus 102 igT~a~~~p~~~~~~~~~~ 120 (243)
T TIGR01919 102 GGTAALENPWWAAAVIRYG 120 (243)
T ss_pred ECchhhCCHHHHHHHHHHc
Confidence 9999999999999988744
No 374
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.025 Score=58.28 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=100.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
.+++++.=+=.-|.-.+ -++++.++|+|++=+-+..| ...+.+.++..++ .+.-+-+-+-.
T Consensus 55 pd~~IvAD~Kt~D~G~~--e~~ma~~aGAd~~tV~g~A~----------------~~TI~~~i~~A~~-~~~~v~iDl~~ 115 (217)
T COG0269 55 PDKIIVADLKTADAGAI--EARMAFEAGADWVTVLGAAD----------------DATIKKAIKVAKE-YGKEVQIDLIG 115 (217)
T ss_pred CCCeEEeeeeecchhHH--HHHHHHHcCCCEEEEEecCC----------------HHHHHHHHHHHHH-cCCeEEEEeec
Confidence 46777777766555443 35677889999998865433 4455666666554 46666666555
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEc-ccccccccCCCCCCCCCCcCcHHHHHHHHHhCC-CceEEEecCCCCHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEI 219 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh-~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ipVi~nGgI~s~~da 219 (956)
.|+ ..+.++.++++|++.+.+| +|.....|.+ +.|+.+.++++... ..+|-..||| +++++
T Consensus 116 ~~~-------~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~---------~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i 178 (217)
T COG0269 116 VWD-------PEQRAKWLKELGVDQVILHRGRDAQAAGKS---------WGEDDLEKIKKLSDLGAKVAVAGGI-TPEDI 178 (217)
T ss_pred CCC-------HHHHHHHHHHhCCCEEEEEecccHhhcCCC---------ccHHHHHHHHHhhccCceEEEecCC-CHHHH
Confidence 454 3577889999999999999 5553222321 23566777777652 2789999999 69999
Q ss_pred HHHhhh-cCEEEEccccccCCc
Q psy2378 220 DLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 220 ~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
..+... +|.|.+||+.-...+
T Consensus 179 ~~~~~~~~~ivIvGraIt~a~d 200 (217)
T COG0269 179 PLFKGIGADIVIVGRAITGAKD 200 (217)
T ss_pred HHHhcCCCCEEEECchhcCCCC
Confidence 999988 999999999876555
No 375
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.00 E-value=0.01 Score=70.33 Aligned_cols=68 Identities=21% Similarity=0.426 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..+.++.|.++|+|.|++.... |.+ +..|+.++++++.+|++||++ |+|.|+++++.+++. ||+|.
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~----G~s--------~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQ----GNS--------IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCC----CCc--------hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 4688999999999999987532 211 134889999999888889887 999999999999998 99997
Q ss_pred Ec
Q psy2378 231 LG 232 (956)
Q Consensus 231 iG 232 (956)
+|
T Consensus 309 vg 310 (495)
T PTZ00314 309 IG 310 (495)
T ss_pred EC
Confidence 64
No 376
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0027 Score=66.48 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..+.|+..++.|+.++|+--=++...| .+-+.+.++++.+.+ ++||=..|||+|.++++++++. ++-|
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rV 101 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARV 101 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence 3678999999999999998532211111 246889999999998 7999999999999999999998 9999
Q ss_pred EEccccccCCcchHHHHHhh
Q psy2378 230 MLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~P~l~~~i~~~~ 249 (956)
.+|..++.||.++.++.+.+
T Consensus 102 iiGt~av~~p~~v~~~~~~~ 121 (241)
T COG0106 102 IIGTAAVKNPDLVKELCEEY 121 (241)
T ss_pred EEecceecCHHHHHHHHHHc
Confidence 99999999999999998754
No 377
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.97 E-value=0.062 Score=61.15 Aligned_cols=203 Identities=12% Similarity=0.065 Sum_probs=120.3
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc------ccceeE-EEecCCCCCCCCHHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL------NRKIHT-IFIGGGTPSLISDTGLDYLLKNIK 694 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~------~~~i~~-i~fgggtPs~L~~~~l~~ll~~i~ 694 (956)
..+-.|+..|.||.-.+. +. .+.-..+++++++......+. +.++.. ++.|+|-|.. +.+.+.+.++.+.
T Consensus 108 SsQvGC~~~C~FC~t~~~-g~-~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~-N~d~v~~al~~l~ 184 (372)
T PRK11194 108 SSQVGCALECKFCSTAQQ-GF-NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL-NLNNVVPAMEIML 184 (372)
T ss_pred ecCCCCCCcCCCCCCCCC-CC-CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc-CHHHHHHHHHHHh
Confidence 345799999999975532 21 122224566666644333221 122444 6777788754 5556666666665
Q ss_pred HHc--ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhC---CCCCHHHHHHHHHH-HHhcC---
Q psy2378 695 KLL--LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEI-AKQYF--- 765 (956)
Q Consensus 695 ~~~--~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~---R~~~~~~~~~ai~~-l~~~~--- 765 (956)
+.. ++.. ..+++++.- +.+.+ +.|.+..--.+.+-+-+.|++..+.+= +.+..+++.+++.. +.+.+
T Consensus 185 ~~~g~~i~~-r~itVsTsG--~~~~i-~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~ 260 (372)
T PRK11194 185 DDFGFGLSK-RRVTLSTSG--VVPAL-DKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 260 (372)
T ss_pred hhhccCcCC-CeEEEECCC--CchHH-HHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCC
Confidence 432 2322 256666533 33444 444443323677778998999987654 45677777766643 33332
Q ss_pred --CeeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 766 --NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 766 --~~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+.+..=+|=|+ .++.+++++..+++..++ .+|.+-+|.+.++.++ +.|+.+. .....+.|.+.|+.
T Consensus 261 rrI~irypLIpGv-NDs~e~a~~La~ll~~l~-~~VnLIPYN~~~~~~~------~~ps~e~----v~~f~~~L~~~Gi~ 328 (372)
T PRK11194 261 GRVTVEYVMLDHV-NDGTEHAHQLAELLKDTP-CKINLIPWNPFPGAPY------GRSSNSR----IDRFSKVLMEYGFT 328 (372)
T ss_pred CeEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEecCCCCCCCCC------CCCCHHH----HHHHHHHHHHCCCe
Confidence 34445455554 578999999999999986 4899999998887543 3455443 22334556666654
No 378
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.97 E-value=0.0061 Score=63.23 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=96.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcc-----eeee----CcccccccCChHHHHHHHHHHhhccCc
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN-----RVQN----GFFGAILMTKPLLVSDCIKAMRDSVEI 133 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~-----~~~~----~~~G~~l~~~~~~~~eiv~~v~~~~~~ 133 (956)
..+++.=|.+.++++..+.++.+.+.|++.|||-+-.|.. ..++ ---|+.-.-+++.+.+.+++ |-
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA 81 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GA 81 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CC
Confidence 4577777899999999999999999999999997765522 0110 01122222344444333332 22
Q ss_pred cEEEEeccCCCC----------------CCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCc-HHHHH
Q psy2378 134 DITVKHRIGIDD----------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVY 196 (956)
Q Consensus 134 pv~vKir~g~~~----------------~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~-~~~i~ 196 (956)
.+. +.++++. -.+ .-| +....++|++.+-+..-.. .. -.+++
T Consensus 82 ~Fi--vsP~~~~~v~~~~~~~~i~~iPG~~T---ptE-i~~A~~~Ga~~vKlFPA~~---------------~GG~~yik 140 (204)
T TIGR01182 82 QFI--VSPGLTPELAKHAQDHGIPIIPGVAT---PSE-IMLALELGITALKLFPAEV---------------SGGVKMLK 140 (204)
T ss_pred CEE--ECCCCCHHHHHHHHHcCCcEECCCCC---HHH-HHHHHHCCCCEEEECCchh---------------cCCHHHHH
Confidence 221 2333221 000 112 2234456666666654221 11 47889
Q ss_pred HHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcc
Q psy2378 197 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 197 ~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l 241 (956)
.++.-+|++|++.+||| +++.+.++++. +.+|.+|..+.....+
T Consensus 141 al~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 141 ALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred HHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCchhh
Confidence 99988899999999999 57999999998 9999999988865443
No 379
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.96 E-value=0.005 Score=79.12 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=102.3
Q ss_pred CCCEEEEec----CCCHHHHHHHHHHHHHcCCCEEEecCCCC----------cce-------eeeCccccccc-------
Q psy2378 63 EHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLNCGCP----------SNR-------VQNGFFGAILM------- 114 (956)
Q Consensus 63 ~~p~~vQl~----g~~~~~~~~aA~~~~~~G~d~IeiN~gCP----------~~~-------~~~~~~G~~l~------- 114 (956)
....|.|+. |.+++.+. .+|.|||-+|-- -.| .|.-.-|..+.
T Consensus 906 ~~~~i~QiaSGrFGv~~e~l~---------~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhd 976 (1485)
T PRK11750 906 KVSKIKQVASGRFGVTPAYLV---------NAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHD 976 (1485)
T ss_pred cCCeEEEccCCcCCCCHHHhc---------cCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCcc
Confidence 356899994 67776433 279999977621 111 11222233332
Q ss_pred -CChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcH
Q psy2378 115 -TKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 192 (956)
Q Consensus 115 -~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~ 192 (956)
..++-+.+.|..+|+.. +.||+||+-.+..- . +++.-+.++|+|.|+|+|..+. .|-+|......-...|
T Consensus 977 iySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v-g------~ia~gvaka~aD~I~IdG~~GG-TGAap~~~~~~~GlP~ 1048 (1485)
T PRK11750 977 IYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGV-G------TIATGVAKAYADLITISGYDGG-TGASPLTSVKYAGSPW 1048 (1485)
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCc-c------HHHhChhhcCCCEEEEeCCCCC-cccccHHHHhhCCccH
Confidence 24667888899999887 57999999765221 1 3455577899999999976531 1222221111122345
Q ss_pred HH-HHHHHHhC------CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCc
Q psy2378 193 NF-VYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240 (956)
Q Consensus 193 ~~-i~~v~~~~------~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~ 240 (956)
++ +.++.+.+ ..|.+++.|++.|+.|+..++.- ||.|.+||++|----
T Consensus 1049 e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialG 1104 (1485)
T PRK11750 1049 ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALG 1104 (1485)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcC
Confidence 44 33333221 25899999999999999998887 999999999765433
No 380
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.94 E-value=0.017 Score=61.47 Aligned_cols=154 Identities=18% Similarity=0.287 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc------------CCCC-
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------------GIDD- 145 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------g~~~- 145 (956)
.+.|+..+++|+++|-++. ....+||++ +-++.+++.+++||-.|==+ |-|-
T Consensus 64 ~~~A~~y~~~GA~aISVlT-------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADav 128 (247)
T PRK13957 64 VQIAKTYETLGASAISVLT-------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAI 128 (247)
T ss_pred HHHHHHHHHCCCcEEEEEc-------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEE
Confidence 3455667889999996652 234577764 45677777788999888322 1110
Q ss_pred -----CCcHHHHHHHHHHHHHcCCCEE-EEccccc----cccc--CCCCCCC--CCCcCcHHHHHHHHHhCC-CceEEEe
Q psy2378 146 -----INSYDFVRDFVGTVSSAGCRTF-IVHARNA----FLKK--LNPKQNR--KIPILKYNFVYNLKKDFP-ELEIIIN 210 (956)
Q Consensus 146 -----~~~~~~~~~~a~~l~~~G~~~i-~vh~r~~----~~~g--~~~~~~~--~~~~~~~~~i~~v~~~~~-~ipVi~n 210 (956)
..+.+.+.++.....+.|.+.| .||...- ...| ..|..++ ..-..|.+...++...+| +..+|+-
T Consensus 129 LLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsE 208 (247)
T PRK13957 129 LLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGE 208 (247)
T ss_pred EeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEc
Confidence 0111245566666666676655 3553210 0000 0111111 222356777888888776 5778999
Q ss_pred cCCCCHHHHHHHhhhcCEEEEccccccCCcchHHHHH
Q psy2378 211 GGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 211 GgI~s~~da~~~l~~ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
+||.|++|+..+...+|+|.||.+++..++....+++
T Consensus 209 SGI~t~~d~~~l~~~~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 209 SGIESRSDLDKFRKLVDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred CCCCCHHHHHHHHHhCCEEEECHHHhCCCCHHHHHHH
Confidence 9999999999976559999999999999998776654
No 381
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.93 E-value=0.033 Score=65.22 Aligned_cols=107 Identities=13% Similarity=0.213 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHH
Q psy2378 119 LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 198 (956)
Q Consensus 119 ~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v 198 (956)
.+.++++.+++ .+.++.+-+ .+. .. ..+.++.+.+.|+|+|.++... ++. ..++..++.++++
T Consensus 95 ~~~~~i~~a~~-~G~~~~~g~-~s~--~t----~~e~~~~a~~~GaD~I~~~pg~------~~~---~~~~~~~~~l~~l 157 (430)
T PRK07028 95 TIEDAVRAARK-YGVRLMADL-INV--PD----PVKRAVELEELGVDYINVHVGI------DQQ---MLGKDPLELLKEV 157 (430)
T ss_pred HHHHHHHHHHH-cCCEEEEEe-cCC--CC----HHHHHHHHHhcCCCEEEEEecc------chh---hcCCChHHHHHHH
Confidence 34566677666 466665432 111 11 2345677888999999887432 100 0123456888999
Q ss_pred HHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHH
Q psy2378 199 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSN 244 (956)
Q Consensus 199 ~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~ 244 (956)
++.+ ++||++-||| +.+.+.++++. +|+|.+||+++..+++...
T Consensus 158 ~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~ 202 (430)
T PRK07028 158 SEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEA 202 (430)
T ss_pred HhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHH
Confidence 8877 6999999999 68999999988 9999999999987765433
No 382
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.93 E-value=0.0025 Score=68.27 Aligned_cols=84 Identities=10% Similarity=0.059 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++|+..++.|+.++||--=. | + .+.+++.++++++ + ++||-.-|||++ ++++++++. ||-|
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLd----g--g------~~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rV 108 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLG----A--D------DASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHV 108 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC----C--C------CcccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEE
Confidence 36799999999999999985322 1 1 1357899999998 7 599999999996 999999998 9999
Q ss_pred EEccccccC----CcchHHHHHhh
Q psy2378 230 MLGREAYKN----PFLMSNFDLNY 249 (956)
Q Consensus 230 miGR~~l~~----P~l~~~i~~~~ 249 (956)
.+|..++.| |.++.++.+.+
T Consensus 109 iigT~Av~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 109 IVTSYVFRDGQIDLERLKDLVRLV 132 (262)
T ss_pred EEchHHHhCCCCCHHHHHHHHHHh
Confidence 999999999 99999998754
No 383
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.02 Score=63.01 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=116.0
Q ss_pred CCCcceeeeeeecccccCCcch---HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 624 IPYKVIINEAIELVKSFGNIDE---KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~~~~---~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.-.|+..|-||--...++.... .+-++..++-|+. ...+..+-|.||.|..++.+.|.+|+..+++.-.
T Consensus 118 t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~------hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpH-- 189 (369)
T COG1509 118 TGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAA------HPEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPH-- 189 (369)
T ss_pred cCcccceeeecccccccccccccCCHHHHHHHHHHHHc------CchhheEEecCCCccccCHHHHHHHHHHHhcCCc--
Confidence 5789999999964434333322 2223333333332 2347889999999999999999999999987421
Q ss_pred CCceeEEE-----eCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCee-EEE-Ee
Q psy2378 701 KNISITLE-----ANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNF-NLD-LI 773 (956)
Q Consensus 701 ~~~eitle-----~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i-~~d-lI 773 (956)
...+.+- +.|..+|+++.+.|.+.+. .+.+-..==++.. =..++.+|++.+++.|+.+ |=. |+
T Consensus 190 -v~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~-~v~~~tH~NHp~E--------it~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 190 -VKIIRIGTRLPVVLPQRITDELCEILGKSRK-PVWLVTHFNHPNE--------ITPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred -eeEEEeecccceechhhccHHHHHHHhccCc-eEEEEcccCChhh--------cCHHHHHHHHHHHHcCceeecchhee
Confidence 2222222 3788999999999988653 2333222111111 1247889999999987743 333 44
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCccccc
Q psy2378 774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 814 (956)
Q Consensus 774 ~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~ 814 (956)
=| =.++.+.+.+-.+.+...++.---+|.+-+.+|+.=++
T Consensus 260 rG-VND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr 299 (369)
T COG1509 260 RG-VNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR 299 (369)
T ss_pred cc-cCCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee
Confidence 44 47889999999999999998877888888888876443
No 384
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.87 E-value=0.017 Score=66.19 Aligned_cols=123 Identities=12% Similarity=0.022 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC--ccEEEEeccCCCCCCcHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDF 151 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 151 (956)
+++++.+.|+.+.+.||+.|-|..| +. ..++.-.+.+++||++++ +++.+-.-.+|+ .++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~-----------~~---~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~----~~~ 204 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPW-----------GP---GVVRRDLKACLAVREAVGPDMRLMHDGAHWYS----RAD 204 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-----------Cc---hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcC----HHH
Confidence 8999999999999999999999421 10 125667889999999885 455554444554 356
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC-HHHHHHHhhh--cCE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-KKEIDLHLNY--IDG 228 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s-~~da~~~l~~--ad~ 228 (956)
+.++++.+++.++.++. +. .++.+++..+++++.. ++||.+...+.+ ++++.++++. +|.
T Consensus 205 A~~~~~~l~~~~l~~iE---------------eP-~~~~d~~~~~~l~~~~-~ipIa~~E~~~~~~~~~~~~i~~~a~d~ 267 (368)
T cd03329 205 ALRLGRALEELGFFWYE---------------DP-LREASISSYRWLAEKL-DIPILGTEHSRGALESRADWVLAGATDF 267 (368)
T ss_pred HHHHHHHhhhcCCCeEe---------------CC-CCchhHHHHHHHHhcC-CCCEEccCcccCcHHHHHHHHHhCCCCE
Confidence 88999999999887773 11 1234788888999987 799988888998 9999999987 888
Q ss_pred EEE
Q psy2378 229 VML 231 (956)
Q Consensus 229 Vmi 231 (956)
|.+
T Consensus 268 v~~ 270 (368)
T cd03329 268 LRA 270 (368)
T ss_pred Eec
Confidence 876
No 385
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.85 E-value=0.0084 Score=64.35 Aligned_cols=156 Identities=23% Similarity=0.294 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec------------cCCC
Q psy2378 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------------IGID 144 (956)
Q Consensus 77 ~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir------------~g~~ 144 (956)
+..+.|+..+++|+++|-++. -..-+||++ +-++.+++.+++|+-.|== .|-|
T Consensus 69 d~~~~a~~y~~~GA~aiSVlT-------e~~~F~Gs~--------~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD 133 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLT-------EPKFFGGSL--------EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD 133 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---------SCCCHHHH--------HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHhcCCCEEEEEC-------CCCCCCCCH--------HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC
Confidence 345556667789999999964 223467764 4577888888999988821 1211
Q ss_pred C------CCcHHHHHHHHHHHHHcCCCEEE-Eccccc----cccc--CCCCCC--CCCCcCcHHHHHHHHHhCC-CceEE
Q psy2378 145 D------INSYDFVRDFVGTVSSAGCRTFI-VHARNA----FLKK--LNPKQN--RKIPILKYNFVYNLKKDFP-ELEII 208 (956)
Q Consensus 145 ~------~~~~~~~~~~a~~l~~~G~~~i~-vh~r~~----~~~g--~~~~~~--~~~~~~~~~~i~~v~~~~~-~ipVi 208 (956)
. --+.+.+.++.....+.|.+.+. ||...- ...| ..|..+ ...-..|++...++...+| ++.+|
T Consensus 134 aVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~i 213 (254)
T PF00218_consen 134 AVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVI 213 (254)
T ss_dssp EEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEE
T ss_pred EeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEE
Confidence 1 00112334555555555554443 443210 0000 000011 1222357777788877665 57899
Q ss_pred EecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 209 INGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 209 ~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
+-+||.+++|+..+... +|+|.||..++..|+.-..+++
T Consensus 214 seSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 214 SESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp EESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHH
T ss_pred eecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhc
Confidence 99999999999999988 9999999999999998877664
No 386
>KOG2900|consensus
Probab=96.83 E-value=0.0045 Score=63.79 Aligned_cols=181 Identities=8% Similarity=0.036 Sum_probs=120.3
Q ss_pred CCCCCcceeeeeeecccccCCcch---HHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCC----HHHHHHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDE---KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS----DTGLDYLLKNIK 694 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~---~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~----~~~l~~ll~~i~ 694 (956)
.+.-.|.--|.||...+.+..... ---+++|+++.+...... -.++..|. .|-+ ...++++++.|+
T Consensus 89 IKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~G----STRFCmGa---AWRD~~GRk~~fk~IlE~ik 161 (380)
T KOG2900|consen 89 IKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNG----STRFCMGA---AWRDMKGRKSAFKRILEMIK 161 (380)
T ss_pred eecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcC----Cceeecch---hhhhhccchhHHHHHHHHHH
Confidence 567899999999987776654332 223678888776554321 12233332 2222 245777888888
Q ss_pred HHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEee
Q psy2378 695 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIY 774 (956)
Q Consensus 695 ~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~ 774 (956)
+.-.. ..++.+ .-.-++.+..+.|+++|++...-.+.+.-+---+.+ -.-+.++-.+.++.+++.|+++...=|+
T Consensus 162 evr~M--gmEvCv--TLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~aGikvCsGGIl 236 (380)
T KOG2900|consen 162 EVRDM--GMEVCV--TLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVREAGIKVCSGGIL 236 (380)
T ss_pred HHHcC--Cceeee--eeccccHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHHhcceecccccc
Confidence 76333 234443 345678889999999999877666655433322222 2335678889999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHcc--CCCeEEEEeeeccCCcccccC
Q psy2378 775 ALPNQTLSELMLDLNYAIQY--SPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 775 GlPgqT~e~~~~tl~~~~~l--~~~~i~~y~l~~~pgT~l~~~ 815 (956)
|| ||.+++-.--+..+..+ .|+.+-+..|.+.||||+.+.
T Consensus 237 GL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 237 GL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred cc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 97 67766644444444444 367788899999999999875
No 387
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.80 E-value=0.027 Score=59.82 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=93.7
Q ss_pred CCCEEEEecCCCH---HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe
Q psy2378 63 EHPIAFQVGDNEP---KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 139 (956)
Q Consensus 63 ~~p~~vQl~g~~~---~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 139 (956)
+-|++.|=..... -.=...++.++++|+|+|=+.-+ . +.. ..+.+.+.++..++ .++.+.+=
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~s----e-r~~--------~~~e~~~~v~~a~~-~Gl~~I~~- 120 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS----E-RRL--------TLADIEAVVERAKK-LGLESVVC- 120 (223)
T ss_pred CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEecc----c-ccc--------CHHHHHHHHHHHHH-CCCeEEEE-
Confidence 4577777542211 11112367778899999987532 0 011 12336677777766 36554441
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCc-HHHHHHHHHhCCCceEEEecCCCCHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIINGGIKTKKE 218 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~-~~~i~~v~~~~~~ipVi~nGgI~s~~d 218 (956)
.+ +. +-++.+.+.|.+.|-+-++.. .|. +.......|.. -+.++.+++..+++||++-|||.++++
T Consensus 121 -v~-----~~----~~~~~~~~~~~~~I~~~p~~~--igt-~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~ 187 (223)
T PRK04302 121 -VN-----NP----ETSAAAAALGPDYVAVEPPEL--IGT-GIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED 187 (223)
T ss_pred -cC-----CH----HHHHHHhcCCCCEEEEeCccc--ccc-CCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH
Confidence 11 11 224456778899998766531 121 11101011222 234455665444699999999999999
Q ss_pred HHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 219 IDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 219 a~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
+..+++. +|||.+|++++.-+++...+.+
T Consensus 188 ~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 188 VKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 9999977 9999999999987776555543
No 388
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.80 E-value=0.022 Score=58.65 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=93.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCc-----------ceeeeCcccccccCChHHHH----------
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS-----------NRVQNGFFGAILMTKPLLVS---------- 121 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~-----------~~~~~~~~G~~l~~~~~~~~---------- 121 (956)
..|++.=|.+.++++..+.++.+.+.|++.||+-+-.|. ......++|.-+.+ +.+.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv 88 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFC 88 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEE
Confidence 456777788999999999999999999999999442210 00111222222211 2222
Q ss_pred -------HHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHH
Q psy2378 122 -------DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 194 (956)
Q Consensus 122 -------eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~ 194 (956)
++++. ++..+++. -+| ..+ ..+ +....+.|+|++-+.... .....++
T Consensus 89 ~~p~~~~~~~~~-~~~~~~~~----i~G---~~t---~~e-~~~A~~~Gadyv~~Fpt~--------------~~~G~~~ 142 (187)
T PRK07455 89 FTPHVDPELIEA-AVAQDIPI----IPG---ALT---PTE-IVTAWQAGASCVKVFPVQ--------------AVGGADY 142 (187)
T ss_pred ECCCCCHHHHHH-HHHcCCCE----EcC---cCC---HHH-HHHHHHCCCCEEEECcCC--------------cccCHHH
Confidence 21111 11112321 123 111 223 345566899999884311 1235788
Q ss_pred HHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 195 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 195 i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
+++++..+|++|+++.||| +++++.++++. +++|.++++++.
T Consensus 143 l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 143 IKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 9999998878999999999 69999999998 999999998764
No 389
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.77 E-value=0.0053 Score=65.38 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++|+.+.+.|++.+++--=.+. .+ .+.+.+.++++.+.. ..||..-|||.|.++++++++. ||-|.
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a-~~---------~~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAA-EG---------VGNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALV 100 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCc-CC---------CcchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 578999999999999998532211 01 135789999998843 2599999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|..++.||.+++++.+.+
T Consensus 101 igt~a~~~p~~~~~~~~~~ 119 (232)
T PRK13586 101 FSTIVFTNFNLFHDIVREI 119 (232)
T ss_pred ECchhhCCHHHHHHHHHHh
Confidence 9999999999999988754
No 390
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=96.76 E-value=0.0038 Score=57.85 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=59.0
Q ss_pred ceEEEEcCCcccHHHHHHHHHhccCCceEEEEeEEEeCCcchhHHHHHHHHHHHHHHhhhcCccEEEE
Q psy2378 424 NILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINA 491 (956)
Q Consensus 424 ~i~~~~vpg~~e~p~~~~~~~~~~~~d~~i~lg~vi~g~t~h~~~v~~~~~~~~~~~~~~~~~pv~~g 491 (956)
.+.-++|||.=.+|.++++|++....|+||+||-+ |.|...-|-+.+.+.||+.+++-+++-|+--
T Consensus 32 ~i~R~TVPGIKdlpvaakrLieeeGCd~Vi~lG~~--G~t~~Dk~~~~~aS~GLi~~QlmTn~hiidV 97 (154)
T COG1731 32 KIKRYTVPGIKDLPVAAKRLIEEEGCDIVIALGWV--GPTEKDKYSYLAASIGLIMAQLMTNKHIIDV 97 (154)
T ss_pred ceEEeeCCCcccChHHHHHHHHhcCCcEEEEccCc--CcchhhHHHHHHHhhHHHHHHHHcCCeEEEE
Confidence 46678899999999999999998899999999976 7788888888889999999999999888753
No 391
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.74 E-value=0.0064 Score=64.99 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..++|+.+++.|++.++|---.+. .| .+.+.+.++++.+.+ .+||..-|||.+.+++++++.. |+-|.
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~-~~---------~~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI-MG---------RGDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVI 105 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc-cC---------CCccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence 578999999999999998643321 11 246899999999987 6999999999999999999998 99999
Q ss_pred EccccccCCcchHHHHHhh
Q psy2378 231 LGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 231 iGR~~l~~P~l~~~i~~~~ 249 (956)
+|..++.| .++.++.+.+
T Consensus 106 igt~~~~~-~~~~~~~~~~ 123 (233)
T cd04723 106 VGTETLPS-DDDEDRLAAL 123 (233)
T ss_pred Ecceeccc-hHHHHHHHhc
Confidence 99999999 9999988755
No 392
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.70 E-value=0.059 Score=56.94 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=102.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHcCCCE--EEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhc-cCccEEEEeccC
Q psy2378 66 IAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIG 142 (956)
Q Consensus 66 ~~vQl~g~~~~~~~~aA~~~~~~G~d~--IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~g 142 (956)
+..+|.+.|+..+.+-.+.++++|+|. |||-=|.=+||.. +| -++++++|+. ++.|+.|=+=..
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t---fg----------~~~i~~lr~~~~~~~~dvHLMv~ 72 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLT---IG----------PMVCQALRKHGITAPIDVHLMVE 72 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcc---cC----------HHHHHHHHhhCCCCCEEEEeccC
Confidence 678999999999999999999999887 4554444444422 22 3578888887 588887765442
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------c------------------------------ccc
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------F------------------------------LKK 178 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------~------------------------------~~g 178 (956)
+ ...+++.+.++|+|.|++|.-.. . ..|
T Consensus 73 --~------P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 73 --P------VDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred --C------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 1 24577888889999999984310 0 012
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHh----CCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcc
Q psy2378 179 LNPKQNRKIPILKYNFVYNLKKD----FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 179 ~~~~~~~~~~~~~~~~i~~v~~~----~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l 241 (956)
+.|+ .+. +..++-++++++. ..++.+-.-|||+ .+.+.++.+. ||.+.+|+++...++.
T Consensus 145 f~GQ--~fi-~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~d~ 208 (223)
T PRK08745 145 FGGQ--AFI-PSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAPDY 208 (223)
T ss_pred CCCc--ccc-HHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 2211 111 1223445555553 1246688999995 8899999888 9999999998876664
No 393
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.70 E-value=0.071 Score=57.31 Aligned_cols=193 Identities=15% Similarity=0.148 Sum_probs=120.7
Q ss_pred CcCcCCHHHHHHHHHcCCCcEEEecccccc---ccc--C--Cchhccc----c-CCCCCCEEEEec--CCCHHHHHHHHH
Q psy2378 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQ---AIL--G--NKKHCLD----F-NAEEHPIAFQVG--DNEPKKLAKSAK 83 (956)
Q Consensus 18 M~~~td~~fR~~~~~~g~~~l~~tem~~~~---~l~--~--~~~~~~~----~-~~~~~p~~vQl~--g~~~~~~~~aA~ 83 (956)
|.++-|...-+++...| ++.+++--.... +.. + ....++. + .....|+++-+- ..+++.+.+.++
T Consensus 13 ~~~~~D~~sA~~~e~~G-~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 13 LPGAWDALSARLAERAG-FKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred ecCCCCHHHHHHHHHcC-CCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence 34566888888888887 677766532111 211 0 0111111 1 223678887763 237789999999
Q ss_pred HHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEeccC--CCCCCcHHHHHHHHHHH
Q psy2378 84 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHRIG--IDDINSYDFVRDFVGTV 159 (956)
Q Consensus 84 ~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g--~~~~~~~~~~~~~a~~l 159 (956)
.+.++|+++|-|.=+.. ++ +.+..|+.-+-.++...+.+++++++.+. ++.|=-|.. +......+++++-+++.
T Consensus 92 ~~~~~G~~gv~iED~~~-~k-~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay 169 (243)
T cd00377 92 ELEEAGAAGIHIEDQVG-PK-KCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAY 169 (243)
T ss_pred HHHHcCCEEEEEecCCC-Cc-cccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence 99999999999965532 11 11223444455777777888888877643 555555532 12113456789999999
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecC--C--CCHHHHHHHhhhcCEEEEcc
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG--I--KTKKEIDLHLNYIDGVMLGR 233 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGg--I--~s~~da~~~l~~ad~VmiGR 233 (956)
.++|+|.+-+++.. +.+.++++.+.. ++||+.+-. - .+.++..++ ....|.+|-
T Consensus 170 ~~AGAD~v~v~~~~-----------------~~~~~~~~~~~~-~~Pl~~~~~~~~~~~~~~~l~~l--G~~~v~~~~ 227 (243)
T cd00377 170 AEAGADGIFVEGLK-----------------DPEEIRAFAEAP-DVPLNVNMTPGGNLLTVAELAEL--GVRRVSYGL 227 (243)
T ss_pred HHcCCCEEEeCCCC-----------------CHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHC--CCeEEEECh
Confidence 99999999997642 678899999886 689887632 1 244443332 266666554
No 394
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.68 E-value=0.046 Score=59.09 Aligned_cols=153 Identities=12% Similarity=0.188 Sum_probs=95.0
Q ss_pred CcCcCCHHHHHHHHHcCCCcEEEecccccccccC--C-----chhcccc-----CCCCC-CEEEEec-C---CCHHHH-H
Q psy2378 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILG--N-----KKHCLDF-----NAEEH-PIAFQVG-D---NEPKKL-A 79 (956)
Q Consensus 18 M~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~--~-----~~~~~~~-----~~~~~-p~~vQl~-g---~~~~~~-~ 79 (956)
|-+.-|.+.-+++.+.| +|.++|.--......| + ..+++.. ...+. ++++=+- | .++++. .
T Consensus 19 ~~tayD~~sArl~e~aG-~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAG-VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEeCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHH
Confidence 44567889999999998 7888876211111112 1 1111111 11234 4666662 3 467774 4
Q ss_pred HHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec--------------cCCCC
Q psy2378 80 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR--------------IGIDD 145 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir--------------~g~~~ 145 (956)
.+.+..+++|+++|.|--| ....+.+++++++ ++||.-=+. .|-++
T Consensus 98 ~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~ 157 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDE 157 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCH
Confidence 4556667799999999643 2455667777754 888852221 12111
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 146 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 146 ~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
+..+++++-++.++++|++.|.+-+- .-+.++++.+.+ ++|+|+-|
T Consensus 158 -~~a~~~i~ra~a~~eAGA~~i~lE~v------------------~~~~~~~i~~~l-~iP~igiG 203 (264)
T PRK00311 158 -EAAEKLLEDAKALEEAGAFALVLECV------------------PAELAKEITEAL-SIPTIGIG 203 (264)
T ss_pred -HHHHHHHHHHHHHHHCCCCEEEEcCC------------------CHHHHHHHHHhC-CCCEEEec
Confidence 12456888899999999999988642 226788999988 79998665
No 395
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.65 E-value=0.029 Score=63.37 Aligned_cols=108 Identities=12% Similarity=0.173 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccc-ccccCCCCCCCCCCcCcHHHH
Q psy2378 117 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFV 195 (956)
Q Consensus 117 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~-~~~g~~~~~~~~~~~~~~~~i 195 (956)
++...+.++.+++.++.|+.++++... .++..++++.++++|+|+|.+|.... ...+..| ...+..-++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~-----~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g---~~~~~~~~eil 157 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSS-----AGGWVDYARQIEQAGADALELNIYYLPTDPDISG---AEVEQRYLDIL 157 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCC-----HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCcc---ccHHHHHHHHH
Confidence 566677777887778899999996521 23567899999999999999975321 0001111 11111235788
Q ss_pred HHHHHhCCCceEEEe--cCCCCHHHHHHHhhh--cCEEEE-cc
Q psy2378 196 YNLKKDFPELEIIIN--GGIKTKKEIDLHLNY--IDGVML-GR 233 (956)
Q Consensus 196 ~~v~~~~~~ipVi~n--GgI~s~~da~~~l~~--ad~Vmi-GR 233 (956)
+.+++.+ ++||++. +++.+..+..+.++. +|+|.+ +|
T Consensus 158 ~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 158 RAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 8998887 7999966 555556666666655 999855 44
No 396
>KOG2550|consensus
Probab=96.65 E-value=0.014 Score=64.49 Aligned_cols=68 Identities=21% Similarity=0.391 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
+-...|.++|+|.|.+..- ||.|- ...+.++-||+.+|+++||+ |++.+.+.++.++.. +|++=+|
T Consensus 254 ~rl~ll~~aGvdvviLDSS----qGnS~--------~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSS----QGNSI--------YQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHHHhhhcCCcEEEEecC----CCcch--------hHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 3456688999999999753 34332 46789999999999999985 777889999999998 9998665
Q ss_pred cc
Q psy2378 233 RE 234 (956)
Q Consensus 233 R~ 234 (956)
-|
T Consensus 321 MG 322 (503)
T KOG2550|consen 321 MG 322 (503)
T ss_pred cc
Confidence 43
No 397
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.62 E-value=0.014 Score=61.21 Aligned_cols=151 Identities=18% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCccee-----------eeCc---------------ccccccCC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-----------QNGF---------------FGAILMTK 116 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~-----------~~~~---------------~G~~l~~~ 116 (956)
..+++.=|.+.++++..+.++.+.+.|++.|||-+-.|.... ..-| .|+.+.--
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 567777789999999999999999999999999764431100 0001 12222222
Q ss_pred hHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHH
Q psy2378 117 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196 (956)
Q Consensus 117 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~ 196 (956)
|-+..++++..++ .++|+.- |. .+ ..| +..+.++|++.+-+..-.. . ....+++
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP----G~---~T---ptE-i~~a~~~Ga~~vKlFPa~~------------~--gg~~~lk 147 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP----GV---ST---PSE-LMLGMELGLRTFKFFPAEA------------S--GGVKMLK 147 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC----CC---CC---HHH-HHHHHHCCCCEEEEccchh------------c--cCHHHHH
Confidence 2222233333332 1222211 11 11 223 4556778888887754220 0 0357888
Q ss_pred HHHHhCCCceEEEecCCCCHHHHHHHhhhcCEEEEccccccCCc
Q psy2378 197 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF 240 (956)
Q Consensus 197 ~v~~~~~~ipVi~nGgI~s~~da~~~l~~ad~VmiGR~~l~~P~ 240 (956)
.++.-+|++|++..||| +++++.++++.=+.+.+|++.|.++.
T Consensus 148 ~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 148 ALAGPFPDVRFCPTGGI-SPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred HHhccCCCCeEEEeCCC-CHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 99888899999999999 57999999986234444455444433
No 398
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.59 E-value=0.025 Score=64.56 Aligned_cols=134 Identities=11% Similarity=0.024 Sum_probs=98.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEe
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKH 139 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKi 139 (956)
..-|+-..+...+++++.+.|+...+.||..+-+-.|- .+++.-.+.++++|++++- .+.+-.
T Consensus 129 ~~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDa 193 (355)
T cd03321 129 RPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDY 193 (355)
T ss_pred CCeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeC
Confidence 33455555655678888888887778899988885431 2455667889999998854 344333
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
-.+|+ .+++.++++.+++.++.+|.= ..++.+|+..+++++.. ++||.+.-.+.++.++
T Consensus 194 N~~~~----~~~A~~~~~~l~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~ 252 (355)
T cd03321 194 NQSLT----VPEAIERGQALDQEGLTWIEE----------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEM 252 (355)
T ss_pred CCCcC----HHHHHHHHHHHHcCCCCEEEC----------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHH
Confidence 33443 356899999999999988842 11235889999999988 7999988889999999
Q ss_pred HHHhhh--cCEEEE
Q psy2378 220 DLHLNY--IDGVML 231 (956)
Q Consensus 220 ~~~l~~--ad~Vmi 231 (956)
.++++. +|.|.+
T Consensus 253 ~~~i~~~~~d~i~~ 266 (355)
T cd03321 253 FKALSAGACDLVMP 266 (355)
T ss_pred HHHHHhCCCCeEec
Confidence 999986 888765
No 399
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.11 Score=53.75 Aligned_cols=199 Identities=12% Similarity=0.152 Sum_probs=116.3
Q ss_pred ccccccCCCceEEccCcCcCCHHHHH-HHHHcCCCcEEEecccccccccCCchhccc-cCCCCCCEEEEec-CCCHHHHH
Q psy2378 3 MINSKYNKRKISIAPMMNLTDRHCRM-FHRQITRYSWLYTEMFTTQAILGNKKHCLD-FNAEEHPIAFQVG-DNEPKKLA 79 (956)
Q Consensus 3 ~~~~~~~~~~i~lAPM~~~td~~fR~-~~~~~g~~~l~~tem~~~~~l~~~~~~~~~-~~~~~~p~~vQl~-g~~~~~~~ 79 (956)
|.+.+| ..|+++- -..+++...-. -.+.-| ..++-.-+=..+..-.....++. +.+.+-.+...=. ..+.++.+
T Consensus 10 i~g~~f-~SRLllG-Tgky~s~~~~~~av~asg-~~ivTvAlRR~~~~~~~~~~~l~~l~~~~~~~LPNTaGc~taeEAv 86 (262)
T COG2022 10 IAGKTF-DSRLLLG-TGKYPSPAVLAEAVRASG-SEIVTVALRRVNATRPGGDGILDLLIPLGVTLLPNTAGCRTAEEAV 86 (262)
T ss_pred ecCeee-eeeEEEe-cCCCCCHHHHHHHHHhcC-CceEEEEEEeecccCCCcchHHHHhhhcCcEeCCCccccCCHHHHH
Confidence 566678 7788653 34566554443 345554 44443332222211111122232 2333333333333 46789999
Q ss_pred HHHHHHHHcC-CCEEEecC-CCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHH
Q psy2378 80 KSAKIIQKWG-YDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 157 (956)
Q Consensus 80 ~aA~~~~~~G-~d~IeiN~-gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~ 157 (956)
..|+.+++++ -|+|-|-. +++ -.|+-|+- |.+++...-++--+.|---.+ ++ .-+|+
T Consensus 87 ~tArlARE~~~t~wiKlEVi~d~----------~tLlPD~~---etl~Aae~Lv~eGF~VlPY~~---dD-----~v~ar 145 (262)
T COG2022 87 RTARLAREALGTNWIKLEVIGDE----------KTLLPDPI---ETLKAAEQLVKEGFVVLPYTT---DD-----PVLAR 145 (262)
T ss_pred HHHHHHHHHccCCeEEEEEecCC----------cccCCChH---HHHHHHHHHHhCCCEEeeccC---CC-----HHHHH
Confidence 9999999864 57776642 222 13555553 344444444433333321111 12 24799
Q ss_pred HHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccc
Q psy2378 158 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 158 ~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~ 235 (956)
+|+++|+.++---+-. -+...+..+-..+.-+++.. ++|||.--||-++.||...++- ||+|++-.+.
T Consensus 146 rLee~GcaavMPl~aP---------IGSg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 146 RLEEAGCAAVMPLGAP---------IGSGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred HHHhcCceEecccccc---------ccCCcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 9999999988432211 11223345667788888888 8999999999999999999998 9999987764
No 400
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=96.58 E-value=0.014 Score=57.58 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
++-|++++++|+-+|-.----|.. .+...|-+-|.||..+.||.++ +.+||..|.|+|- +.+ |+.
T Consensus 24 ~eQAkIAE~AGA~AVMaLervPad--iR~~GGVaRMsDP~~I~eI~~a----VsIPVMAK~RIGH--------fvE-Aqi 88 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERVPAD--IRAAGGVARMSDPKMIKEIMDA----VSIPVMAKVRIGH--------FVE-AQI 88 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS-HHH--HHHTTS---S--HHHHHHHHHH-----SSEEEEEEETT---------HHH-HHH
T ss_pred HHHHHHHHHhCCeEEEEeccCCHh--HHhcCCccccCCHHHHHHHHHh----eEeceeeccccce--------eeh-hhh
Confidence 456889999998877654333432 2334578889999987777655 7899999999983 333 899
Q ss_pred HHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 159 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
|+..|+|+|.=+-= ++ |+|..+ .--|..+ ++|.++.- .+.-.|.+-+.+ |.++
T Consensus 89 LealgVD~IDESEV------LT--------pAD~~~-HI~K~~F-~vPFVcGa--rnLGEALRRI~EGAaMI 142 (208)
T PF01680_consen 89 LEALGVDYIDESEV------LT--------PADEEN-HIDKHNF-KVPFVCGA--RNLGEALRRIAEGAAMI 142 (208)
T ss_dssp HHHTT-SEEEEETT------S----------S-SS-----GGG--SS-EEEEE--SSHHHHHHHHHTT-SEE
T ss_pred HHHhCCceeccccc------cc--------cccccc-cccchhC-CCCeEecC--CCHHHHHhhHHhhhhhh
Confidence 99999999976532 11 233322 1113445 68877543 355555555554 6654
No 401
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.56 E-value=0.086 Score=56.92 Aligned_cols=170 Identities=11% Similarity=0.130 Sum_probs=99.6
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHHHcCCCEEEe--cCCCCcceeeeCcccccccC-ChHHHHHHHHHHhhcc
Q psy2378 62 EEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMT-KPLLVSDCIKAMRDSV 131 (956)
Q Consensus 62 ~~~p~~vQl~g~~-------~~~~~~aA~~~~~~G~d~Iei--N~gCP~~~~~~~~~G~~l~~-~~~~~~eiv~~v~~~~ 131 (956)
.+.|++++|.+++ ...+.-..+.|.+.|+|+|=+ |.|.+ -+. ..+.+.+++++.. .+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~------------~E~~~l~~l~~v~~ea~-~~ 139 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSE------------YEHQSIKNIIQLVDAGL-RY 139 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCH------------HHHHHHHHHHHHHHHHH-Hh
Confidence 3567999998742 233444456677789998776 44422 111 1122333333333 35
Q ss_pred CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 132 ~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
++|+.+-...|....+..+.+...++...+.|+|.|-+- |. . +..+++.+.. .+||+..|
T Consensus 140 G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------------y~---~-~~f~~vv~a~-~vPVviaG 199 (264)
T PRK08227 140 GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------------YV---E-EGFERITAGC-PVPIVIAG 199 (264)
T ss_pred CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------------CC---H-HHHHHHHHcC-CCcEEEeC
Confidence 999988333343222233345566788889999999542 11 1 4566777776 58999888
Q ss_pred CCCC-HHHHHHHhh----h-cCEEEEccccccCCc---chHHHHHhhccCCCCCCCCCHHHHHHHHHh
Q psy2378 212 GIKT-KKEIDLHLN----Y-IDGVMLGREAYKNPF---LMSNFDLNYYSNLPQYKIPTRIDIINLDSE 270 (956)
Q Consensus 212 gI~s-~~da~~~l~----~-ad~VmiGR~~l~~P~---l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (956)
|=.. .+++.+++. . |.||.+||=....|+ +.+.+..-.+++ .+.+|-++.|.+
T Consensus 200 G~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~------~s~~eA~~~~~~ 261 (264)
T PRK08227 200 GKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHEN------ETAKEAYELYLS 261 (264)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCC------CCHHHHHHHHHH
Confidence 8774 344444433 3 999999999888765 333344433332 355666655543
No 402
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.56 E-value=0.012 Score=60.59 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
++.+.+.|+|+|.++.... +.+ ......+..++.++++++.. ++||++-|||+ .+++.++++. +|+|.+|++
T Consensus 108 ~~~~~~~g~d~i~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~-~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~ 180 (196)
T cd00564 108 ALRAEELGADYVGFGPVFP---TPT--KPGAGPPLGLELLREIAELV-EIPVVAIGGIT-PENAAEVLAAGADGVAVISA 180 (196)
T ss_pred HHHHhhcCCCEEEECCccC---CCC--CCCCCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCCEEEEehH
Confidence 4567778999999875431 111 11111356789999998875 79999999995 7999999988 999999999
Q ss_pred cccCCcchHHHH
Q psy2378 235 AYKNPFLMSNFD 246 (956)
Q Consensus 235 ~l~~P~l~~~i~ 246 (956)
++.+++....++
T Consensus 181 i~~~~~~~~~~~ 192 (196)
T cd00564 181 ITGADDPAAAAR 192 (196)
T ss_pred hhcCCCHHHHHH
Confidence 988777555444
No 403
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.55 E-value=0.048 Score=60.01 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=93.0
Q ss_pred CcCCHHHHHHHHHcCCCcEEEecccccccccCC-------chhcccc-----CCCCCCEEE-Ee----cCCCHHHHHHHH
Q psy2378 20 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-------KKHCLDF-----NAEEHPIAF-QV----GDNEPKKLAKSA 82 (956)
Q Consensus 20 ~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~-------~~~~~~~-----~~~~~p~~v-Ql----~g~~~~~~~~aA 82 (956)
+.-|.++.+++.+.| +|++-+.=-......|. .+.++.. .....|+++ =+ ++.++++..+.|
T Consensus 41 TAyD~~sA~i~d~aG-vD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA 119 (332)
T PLN02424 41 TAYDYPSAVHVDSAG-IDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESA 119 (332)
T ss_pred ecCCHHHHHHHHHcC-CCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHH
Confidence 345677777777776 56665542111111121 1111111 123455554 33 235788888877
Q ss_pred HHH-HHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc---------CCC----CCCc
Q psy2378 83 KII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GID----DINS 148 (956)
Q Consensus 83 ~~~-~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---------g~~----~~~~ 148 (956)
.++ +++|+++|.|-.|+ ....++|+++. ..++||.-=|.+ |+. ..+.
T Consensus 120 ~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~ 180 (332)
T PLN02424 120 VRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAES 180 (332)
T ss_pred HHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHH
Confidence 766 78999999996442 22346667776 459999844433 111 1122
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 149 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 149 ~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
...+++-|+.++++|++.|.+-+-. -+.+++|.+.+ +||+|+-|
T Consensus 181 a~~li~dA~ale~AGAf~ivLE~Vp------------------~~la~~It~~l-~IPtIGIG 224 (332)
T PLN02424 181 AVKVVETALALQEAGCFAVVLECVP------------------APVAAAITSAL-QIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence 3467788999999999999886532 34788899888 79998665
No 404
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.54 E-value=0.027 Score=66.84 Aligned_cols=73 Identities=19% Similarity=0.388 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..+-++.|.++|+|.|.+..-. |.+ ..-|+.++++|+..|+++|| .|+|.|+++++.+++. ||+|.
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~----g~~--------~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQ----GDS--------IYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC----CCc--------HHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEE
Confidence 4577899999999999997643 211 13589999999988776666 6899999999999998 99997
Q ss_pred Ec--ccccc
Q psy2378 231 LG--REAYK 237 (956)
Q Consensus 231 iG--R~~l~ 237 (956)
+| .|.+.
T Consensus 316 vg~g~G~~~ 324 (505)
T PLN02274 316 VGMGSGSIC 324 (505)
T ss_pred ECCCCCccc
Confidence 65 66444
No 405
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.53 E-value=0.013 Score=61.55 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
+....+.|+|+|.++.-.. +.+ ...+.++..++.++++++..+++||++-||| +++++.++++. +|+|.+|++
T Consensus 117 ~~~a~~~gaD~v~~~~~~~---~~~--~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~ 190 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFP---TPT--KKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSA 190 (212)
T ss_pred HHHHhHcCCCEEEECCccC---CCC--CCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHH
Confidence 4556678999998874221 111 1112223458999999988745999999999 69999999988 999999999
Q ss_pred cccCCcchHH
Q psy2378 235 AYKNPFLMSN 244 (956)
Q Consensus 235 ~l~~P~l~~~ 244 (956)
+..+++..+.
T Consensus 191 i~~~~d~~~~ 200 (212)
T PRK00043 191 ITGAEDPEAA 200 (212)
T ss_pred hhcCCCHHHH
Confidence 8876664433
No 406
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.53 E-value=0.013 Score=62.87 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc---CccEEEEeccC---CCCCCcHHHH
Q psy2378 79 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIG---IDDINSYDFV 152 (956)
Q Consensus 79 ~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g---~~~~~~~~~~ 152 (956)
...++.+.+.|+|+|++-+ .+|...-.+.+.+.+-++++++.+ ++|+.+-.-+. ..+....+..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi----------~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I 148 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVI----------NYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLI 148 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEE----------EHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHH
T ss_pred HHHHHHHHHcCCceeeeec----------cccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHH
Confidence 5667788889999999943 122222223555555566665555 77777663221 1111122346
Q ss_pred HHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCce----EEEecCC------CCHHHHHHH
Q psy2378 153 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE----IIINGGI------KTKKEIDLH 222 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ip----Vi~nGgI------~s~~da~~~ 222 (956)
...++.+.++|+|.|-..... . ......+.+.++++.+.. .+| |.++||| .+.+++.++
T Consensus 149 ~~a~ria~e~GaD~vKt~tg~---------~-~~~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~ 217 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTGK---------P-VGATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEF 217 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS---------S-SCSHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEecCCc---------c-ccccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHH
Confidence 778888999999999876442 1 111123455566666655 478 9999999 999999999
Q ss_pred hhh-c--CEEEEccccc
Q psy2378 223 LNY-I--DGVMLGREAY 236 (956)
Q Consensus 223 l~~-a--d~VmiGR~~l 236 (956)
++. | -|++.||...
T Consensus 218 i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 218 IEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HHTTHSEEEEEEHHHHH
T ss_pred HHcCChhHHHHHHHHHH
Confidence 988 8 8999998653
No 407
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.52 E-value=0.02 Score=59.08 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=85.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCccee-----------eeCc---------------ccccccCCh
Q psy2378 64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-----------QNGF---------------FGAILMTKP 117 (956)
Q Consensus 64 ~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~-----------~~~~---------------~G~~l~~~~ 117 (956)
.+++.=|.+.++++..+.++.+.+.|+..|||-+-.|.... ..-| .|+.++-.|
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP 87 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC
Confidence 46788889999999999999999999999999875541100 0000 111111112
Q ss_pred HHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCc-HHHHH
Q psy2378 118 LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVY 196 (956)
Q Consensus 118 ~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~-~~~i~ 196 (956)
.+-.++++..++. ++|+.--.-. ..|+ ..+.++|++.+-+..-. ... ..+++
T Consensus 88 ~~~~~v~~~~~~~-~i~~iPG~~T----------ptEi-~~A~~~G~~~vK~FPA~---------------~~GG~~~ik 140 (196)
T PF01081_consen 88 GFDPEVIEYAREY-GIPYIPGVMT----------PTEI-MQALEAGADIVKLFPAG---------------ALGGPSYIK 140 (196)
T ss_dssp S--HHHHHHHHHH-TSEEEEEESS----------HHHH-HHHHHTT-SEEEETTTT---------------TTTHHHHHH
T ss_pred CCCHHHHHHHHHc-CCcccCCcCC----------HHHH-HHHHHCCCCEEEEecch---------------hcCcHHHHH
Confidence 2222222222211 2222111100 1121 22334566666554322 123 67899
Q ss_pred HHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcc
Q psy2378 197 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 197 ~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l 241 (956)
.++.-+|++|++.+|||+ ++.+.++++. +.+|++|+.+..+.++
T Consensus 141 ~l~~p~p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~~~i 185 (196)
T PF01081_consen 141 ALRGPFPDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPKDLI 185 (196)
T ss_dssp HHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHHHH
T ss_pred HHhccCCCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCHHHH
Confidence 999888999999999995 7899999998 9999999977765544
No 408
>KOG2334|consensus
Probab=96.49 E-value=0.0005 Score=75.98 Aligned_cols=133 Identities=13% Similarity=0.211 Sum_probs=106.2
Q ss_pred EEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc
Q psy2378 92 EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA 171 (956)
Q Consensus 92 ~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~ 171 (956)
..++|++||..+....+.+.+.+..+..+..+.+..++..+.|+ .|.|+-.+..+ ...+++.+++.+ ++.+|+
T Consensus 289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d----~~~~~~~le~~~--~l~i~~ 361 (477)
T KOG2334|consen 289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPAD----TVNLAERLEDLS--ALAIHG 361 (477)
T ss_pred hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcch----hhhHhhhHHhcc--chhhhh
Confidence 36779999999988888999999999999999999999999999 89998766544 568899999988 667777
Q ss_pred cccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchH
Q psy2378 172 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMS 243 (956)
Q Consensus 172 r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~ 243 (956)
|.. ..+...|+.|+.++.+.... .+|+++||.+....+- .+. +..||.+|+...+-.++.
T Consensus 362 r~~--------f~r~~~pa~~~~~k~~l~~~-~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~ 422 (477)
T KOG2334|consen 362 RKI--------FDRPTDPAKWDTPKMVLADL-CVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWS 422 (477)
T ss_pred ccc--------ccccCCCcCCCCHHHHHHHh-hhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccC
Confidence 752 23344578898888887777 6999999999877663 233 777888888887776653
No 409
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.45 E-value=0.027 Score=58.24 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=90.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCccee----eeCc-----ccccccCChHHHHHHHHHHhhccCc
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV----QNGF-----FGAILMTKPLLVSDCIKAMRDSVEI 133 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~----~~~~-----~G~~l~~~~~~~~eiv~~v~~~~~~ 133 (956)
..+++.=|.+.++++..+.++.+.+.|+..|||.+-.|..-. .+.. -|+.-.-+++.+.+.+++ |-
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA 77 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GS 77 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CC
Confidence 467888899999999999999999999999999876552110 0001 122222344443333322 11
Q ss_pred cEEEEeccCCCC----------------CCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcC-cHHHHH
Q psy2378 134 DITVKHRIGIDD----------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL-KYNFVY 196 (956)
Q Consensus 134 pv~vKir~g~~~----------------~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~-~~~~i~ 196 (956)
.+. +.++++. -.+ ..| +....++|++.+-+..-.. . .-.+++
T Consensus 78 ~Fi--vSP~~~~~vi~~a~~~~i~~iPG~~T---ptE-i~~A~~~Ga~~vK~FPa~~---------------~GG~~yik 136 (201)
T PRK06015 78 RFI--VSPGTTQELLAAANDSDVPLLPGAAT---PSE-VMALREEGYTVLKFFPAEQ---------------AGGAAFLK 136 (201)
T ss_pred CEE--ECCCCCHHHHHHHHHcCCCEeCCCCC---HHH-HHHHHHCCCCEEEECCchh---------------hCCHHHHH
Confidence 121 2222221 001 112 2234557777776654321 2 247899
Q ss_pred HHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 197 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 197 ~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
.++.-+|++|++.+||| +++.+.++++. +..+..|..+.
T Consensus 137 al~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 137 ALSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred HHHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhC
Confidence 99998999999999999 57999999997 55555565555
No 410
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.43 E-value=0.097 Score=54.40 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc------CCC-----
Q psy2378 76 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------GID----- 144 (956)
Q Consensus 76 ~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~----- 144 (956)
+...+.|+.+.++|-|+|.| ||+.--+.+.+.++++++|+..++|+..--.. +.|
T Consensus 28 ~~~~ei~~~~~~~GTDaImI--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~ 93 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMI--------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFP 93 (240)
T ss_pred cccHHHHHHHHHcCCCEEEE--------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEE
Confidence 44566777778899999999 56666677889999999999899998765322 111
Q ss_pred ------CCCcH-HHHHHHHHHHHHcCCC-----EEEEc----------cc----cc-----------cccc----CCCCC
Q psy2378 145 ------DINSY-DFVRDFVGTVSSAGCR-----TFIVH----------AR----NA-----------FLKK----LNPKQ 183 (956)
Q Consensus 145 ------~~~~~-~~~~~~a~~l~~~G~~-----~i~vh----------~r----~~-----------~~~g----~~~~~ 183 (956)
+...+ ..-.+-++.+.+.+.. ++.+. ++ +. .+-| |-...
T Consensus 94 svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEag 173 (240)
T COG1646 94 SVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAG 173 (240)
T ss_pred EEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEec
Confidence 10000 0112233333333321 12221 11 00 0001 00011
Q ss_pred CCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 184 ~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
..+..|..-+.++++++. .|+|.-|||.|+|.|.++.+. ||.+..|.-+..||+-+.++.+
T Consensus 174 sga~~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 174 SGAGDPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred CCCCCCcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHHH
Confidence 223446677778777664 499999999999999999997 9999999999999976666554
No 411
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.41 E-value=0.063 Score=58.91 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHhhccCccEEEEecc--CCCCC-----CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCC
Q psy2378 116 KPLLVSDCIKAMRDSVEIDITVKHRI--GIDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188 (956)
Q Consensus 116 ~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~-----~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~ 188 (956)
+.+...++++-.+. .+++|-..+.. |.++. .+.-+..+..+..++.|+|+|.+.-++. +.-+. ..+
T Consensus 113 ni~~t~~v~~~a~~-~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~-hg~~~-----~~~ 185 (282)
T TIGR01859 113 NLALTKKVVEIAHA-KGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTS-HGKYK-----GEP 185 (282)
T ss_pred HHHHHHHHHHHHHH-cCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCcc-ccccC-----CCC
Confidence 34444555444443 36666666533 11110 1111233434444558999999875542 11111 135
Q ss_pred cCcHHHHHHHHHhCCCceEEEec--CCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 189 ILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 189 ~~~~~~i~~v~~~~~~ipVi~nG--gI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
..+++.++++++.+ ++|+++-| || +.+++.++++. ++.|-+++.+.
T Consensus 186 ~l~~e~L~~i~~~~-~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 186 GLDFERLKEIKELT-NIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred ccCHHHHHHHHHHh-CCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHHH
Confidence 68999999999998 79999999 98 57888889888 99999999775
No 412
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.053 Score=56.23 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=91.7
Q ss_pred CCCHHH-HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc--CCCCCCc
Q psy2378 72 DNEPKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDINS 148 (956)
Q Consensus 72 g~~~~~-~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~~~ 148 (956)
|.++.. =+.-++.+.+.|+|.||+=. ..|.-.-.|.+.+.+=+++|+++++-++.+|.=+ +.-.+
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~-- 139 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTD-- 139 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH--
Confidence 555544 34455677788999999832 1344455689999999999999997656666533 33222
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEEEecCCCCHHHHHHHhhh-c
Q psy2378 149 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-I 226 (956)
Q Consensus 149 ~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi~nGgI~s~~da~~~l~~-a 226 (956)
++....++...++|+|+|--+.+. + ...+-.+.+.-+++.+ +.+.|=++|||.|.+|+..+++. +
T Consensus 140 -ee~~~A~~i~~~aGAdFVKTSTGf------~------~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga 206 (228)
T COG0274 140 -EEKRKACEIAIEAGADFVKTSTGF------S------AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGA 206 (228)
T ss_pred -HHHHHHHHHHHHhCCCEEEcCCCC------C------CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhH
Confidence 345788888999999999766443 1 1134555555555544 24888999999999999999986 4
Q ss_pred CEE
Q psy2378 227 DGV 229 (956)
Q Consensus 227 d~V 229 (956)
+-+
T Consensus 207 ~Ri 209 (228)
T COG0274 207 TRI 209 (228)
T ss_pred HHh
Confidence 433
No 413
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.32 E-value=0.2 Score=55.15 Aligned_cols=139 Identities=10% Similarity=0.152 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHc-CCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHH
Q psy2378 72 DNEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD 150 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~-G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~ 150 (956)
..+.++.+..|++++++ |-++|-|-- ..+ --.++.|+..+.+-.+.+.+. |+-+.+-+.. +
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEv-------i~e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~~---d----- 207 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEV-------LGD--AKTLYPDMVETLKATEILVKE-GFQVMVYCSD---D----- 207 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEE-------cCC--CCCcccCHHHHHHHHHHHHHC-CCEEEEEeCC---C-----
Confidence 35789999999999987 457776642 111 123445555444443333221 4444333322 1
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
...++++++.|+.++--- .. .-| +| .+..+-+.++.+.+.. ++||+.-+||.+++|+.++++- ||+|
T Consensus 208 --~~~a~~l~~~g~~avmPl-~~--pIG-sg-----~gv~~p~~i~~~~e~~-~vpVivdAGIg~~sda~~AmelGadgV 275 (326)
T PRK11840 208 --PIAAKRLEDAGAVAVMPL-GA--PIG-SG-----LGIQNPYTIRLIVEGA-TVPVLVDAGVGTASDAAVAMELGCDGV 275 (326)
T ss_pred --HHHHHHHHhcCCEEEeec-cc--ccc-CC-----CCCCCHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 367999999999444221 11 011 11 1223778888888875 7999999999999999999998 9999
Q ss_pred EEccccccCCc
Q psy2378 230 MLGREAYKNPF 240 (956)
Q Consensus 230 miGR~~l~~P~ 240 (956)
.+..|...-++
T Consensus 276 L~nSaIa~a~d 286 (326)
T PRK11840 276 LMNTAIAEAKN 286 (326)
T ss_pred EEcceeccCCC
Confidence 99999875444
No 414
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.28 Score=53.26 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=101.7
Q ss_pred CCCcceeeeeeecccccC--Ccc-hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccC
Q psy2378 624 IPYKVIINEAIELVKSFG--NID-EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 700 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~--~~~-~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~ 700 (956)
.-.|+..|-||.-+.... ... .......++.++.... ...+.|.|.||-|+.. .+.+..++...++.
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~-----~~~~gvt~SGGEP~~q-~e~~~~~~~~ake~---- 111 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYS-----ESGGGVTFSGGEPTLQ-AEFALDLLRAAKER---- 111 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhc-----CCCCEEEEECCcchhh-HHHHHHHHHHHHHC----
Confidence 457888999997554432 111 1222234444444332 2357799999998764 34566677777664
Q ss_pred CCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHh-CCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCC-
Q psy2378 701 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL-GRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN- 778 (956)
Q Consensus 701 ~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~-~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPg- 778 (956)
.....+++|- ..+++.++.|.+. ++.+.+-+-.++++.-+.+ +... +.+.+.++.+.+.+..+.+-..+ .||
T Consensus 112 -Gl~~~l~TnG-~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~--~~vl~~~~~l~~~g~~ve~r~lv-iPg~ 185 (260)
T COG1180 112 -GLHVALDTNG-FLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN--EPVLENLELLADLGVHVEIRTLV-IPGY 185 (260)
T ss_pred -CCcEEEEcCC-CCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc--HHHHHHHHHHHcCCCeEEEEEEE-ECCC
Confidence 2345555543 3556666666666 7899999999999955444 4433 89999999999976654432222 265
Q ss_pred -CCHHHHHHHHHHHHccC
Q psy2378 779 -QTLSELMLDLNYAIQYS 795 (956)
Q Consensus 779 -qT~e~~~~tl~~~~~l~ 795 (956)
.+++++++-++++.++.
T Consensus 186 ~d~~e~i~~i~~~i~~~~ 203 (260)
T COG1180 186 NDDEEEIRELAEFIADLG 203 (260)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 57899999999999754
No 415
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.31 E-value=0.098 Score=58.76 Aligned_cols=204 Identities=9% Similarity=-0.037 Sum_probs=121.5
Q ss_pred cccCCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHc
Q psy2378 619 KSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 619 ~~~~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~ 697 (956)
++...+-.|+..|.||...+. +.. +.-..+++++++....+ ...++.|-|.| |.|+... +.+...++.+.+..
T Consensus 98 ~CvSsQvGC~~~C~FC~tg~~-g~~-RnLs~~EI~~Qv~~~~~---~~~i~nIVfmGmGEPl~N~-d~vl~ai~~l~~~~ 171 (344)
T PRK14464 98 LCVSTQVGCAVGCVFCMTGRS-GLL-RQLGSAEIVAQVVLARR---RRAVKKVVFMGMGEPAHNL-DNVLEAIDLLGTEG 171 (344)
T ss_pred EEEEccCCcCCCCCcCcCCCC-CCC-CCCCHHHHHHHHHHHHh---cCCCCEEEEeccCcccCCH-HHHHHHHHHhhchh
Confidence 344567899999999975432 211 11123455555544332 13477888877 9998543 33333333443333
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCC-CeEEecCCCCCHHHHHHhCC---CCCHHHHHHHHHHHHh-cCCeeEEE-
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEIAKQ-YFNNFNLD- 771 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~~~R---~~~~~~~~~ai~~l~~-~~~~i~~d- 771 (956)
+++ ...+++.. -.+ ...++.|.+.++ ..+.+-+.+.+++..+.+.+ .++.+++.++++...+ .+..+.+.
T Consensus 172 ~i~-~r~itiST--~G~-~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~Ey 247 (344)
T PRK14464 172 GIG-HKNLVFST--VGD-PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQW 247 (344)
T ss_pred cCC-CceEEEec--ccC-chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEE
Confidence 332 24555422 112 334555555443 35777889999999888765 5688888888866654 35444322
Q ss_pred EeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 772 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 772 lI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
+++.-=.++.++.++-.+++..+ +-++.+-+|.+.+|+.+. .|+.+. .....+.|.+.|..
T Consensus 248 vLl~GVNDs~e~a~~L~~~l~~~-~~~vNLIPyN~v~g~~~~------rp~~~~----i~~f~~~L~~~gi~ 308 (344)
T PRK14464 248 TLLEGVNDSDEEMDGIVRLLKGK-YAVMNLIPYNSVDGDAYR------RPSGER----IVAMARYLHRRGVL 308 (344)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcc-ccccceecCCccCCCCcc------CCCHHH----HHHHHHHHHHCCce
Confidence 33333478999999888888766 457888999888887543 244333 23344556766654
No 416
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.27 E-value=0.15 Score=58.42 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=112.2
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCC
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~ 701 (956)
++.--|...|.||-+.....+. =+++||.|+.- ++ ..+.
T Consensus 79 d~~~~C~N~C~FCFidQlP~gm------------------------R~sLY~KDDDy------RL----SFL~------- 117 (433)
T TIGR03279 79 DGLIQCNNRCPFCFIDQQPPGK------------------------RESLYLKDDDY------RL----SFLY------- 117 (433)
T ss_pred CcccccCCcCceEeccCCCCCC------------------------cCcceeccCcc------hh----hhhc-------
Confidence 7889999999999543321111 14677877541 11 1111
Q ss_pred CceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecCCCCCH
Q psy2378 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL 781 (956)
Q Consensus 702 ~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~GlPgqT~ 781 (956)
...+|+ ..++++-++...+.++..+.+.|+|.|++..+.|=+.-.+.++.+.++++.++++.+++.+++ .||-+.
T Consensus 118 GnyiTL----TNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVl-cPGiND 192 (433)
T TIGR03279 118 GSYLTL----TNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVV-CPGIND 192 (433)
T ss_pred cceeee----cCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEE-cCCcCC
Confidence 113332 346788889999999999999999999999999877778999999999999999999987666 588865
Q ss_pred -HHHHHHHHHHHcc----CCCeEEEEeeeccCCcccccC-CCCCCCCHHHHHHHHHHH
Q psy2378 782 -SELMLDLNYAIQY----SPPHLSLYSLTIEPNTYFFKY-PPLSMPSNDENAVMQDKI 833 (956)
Q Consensus 782 -e~~~~tl~~~~~l----~~~~i~~y~l~~~pgT~l~~~-~~~~~~~~~~~~~~~~~~ 833 (956)
+++.+|++.+.++ .|.-.|+ ...|.-=|...+- ......+.++..+..+.+
T Consensus 193 g~~L~~Ti~dL~~~~~~~~P~v~S~-avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 193 GKHLERTLRDLAQFHDGDWPTVLSV-AVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHHHHHHHHHHHhhcccCCCceeEE-EEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 7999999999998 4432222 2223333444332 344455555555444444
No 417
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.27 E-value=0.098 Score=57.29 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=116.9
Q ss_pred CcCCHHHHHHHHHcCCCcEEEecccccccccCCc-------hhccc-----cCCCCCCEEEEe---cCCCHHHHHHHHHH
Q psy2378 20 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK-------KHCLD-----FNAEEHPIAFQV---GDNEPKKLAKSAKI 84 (956)
Q Consensus 20 ~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~~-------~~~~~-----~~~~~~p~~vQl---~g~~~~~~~~aA~~ 84 (956)
++-|..=-+++.+.| .+-+||--.......|.. .+++. ....+.|+++=+ +|+ |.+..+.++.
T Consensus 19 ~~~Da~SAri~e~aG-f~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~~~v~~tv~~ 96 (285)
T TIGR02317 19 GAINAMAALLAERAG-FEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGE-AFNVARTVRE 96 (285)
T ss_pred CCCCHHHHHHHHHcC-CCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCC-HHHHHHHHHH
Confidence 555666666777777 566665532111112211 11111 122467999888 355 9999999999
Q ss_pred HHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcC
Q psy2378 85 IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG 163 (956)
Q Consensus 85 ~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G 163 (956)
..++|+.+|.|-=... +|.+.. .++.-+-.++...+=+++++++. +.++.+--|..-.....++++++=+++..++|
T Consensus 97 ~~~aG~agi~IEDq~~-pK~cgh-~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AG 174 (285)
T TIGR02317 97 MEDAGAAAVHIEDQVL-PKRCGH-LPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAG 174 (285)
T ss_pred HHHcCCeEEEEecCCC-ccccCC-CCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcC
Confidence 9999999999954431 222222 22332334555555556666554 45566666664322234677888899999999
Q ss_pred CCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEe---cCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 164 CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 164 ~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~n---GgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+|.|-+++-+ +.+.++++.+.+ ++|++.| |+-+-.-+++++-+. ...|..|-.++
T Consensus 175 AD~vfi~g~~-----------------~~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 175 ADMIFPEALT-----------------SLEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAF 233 (285)
T ss_pred CCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHH
Confidence 9999998632 567788898888 4888433 332111234444443 88888885443
No 418
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.27 E-value=0.086 Score=56.74 Aligned_cols=154 Identities=12% Similarity=0.174 Sum_probs=96.0
Q ss_pred CcCcCCHHHHHHHHHcCCCcEEEecccccccccC--C-----chhcccc-----CCCCCC-EEEEec-C---CCHHHHHH
Q psy2378 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILG--N-----KKHCLDF-----NAEEHP-IAFQVG-D---NEPKKLAK 80 (956)
Q Consensus 18 M~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~--~-----~~~~~~~-----~~~~~p-~~vQl~-g---~~~~~~~~ 80 (956)
|-+.=|..+-+++.+.| ++.++|.--......| + ..+++.. ...+.| +++=+- | +++++..+
T Consensus 16 ~~~ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAG-VDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 34566889988888888 7888876211111112 1 1111111 223557 555552 3 56888777
Q ss_pred HHHHH-HHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC---------C----CCC
Q psy2378 81 SAKII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG---------I----DDI 146 (956)
Q Consensus 81 aA~~~-~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g---------~----~~~ 146 (956)
.+.++ +++|+++|.|--| ....+.|++++++ ++||..=+.+. + ...
T Consensus 95 ~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~ 154 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTE 154 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCH
Confidence 66555 5599999999543 2455666776653 78876333221 1 011
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 147 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 147 ~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
...+++++-++.++++|++.|.+-+- .-+.++++.+.+ ++|+|+-|
T Consensus 155 ~~a~~~i~ra~a~~~AGA~~i~lE~v------------------~~~~~~~i~~~v-~iP~igiG 200 (254)
T cd06557 155 EEAERLLEDALALEEAGAFALVLECV------------------PAELAKEITEAL-SIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCC------------------CHHHHHHHHHhC-CCCEEEec
Confidence 12456888899999999999988642 126788999998 79999766
No 419
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=96.26 E-value=0.55 Score=49.42 Aligned_cols=180 Identities=10% Similarity=0.085 Sum_probs=117.3
Q ss_pred HHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCC
Q psy2378 649 LEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGIN 728 (956)
Q Consensus 649 v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~ 728 (956)
++.+++++.+....+.. .=..|.|.||-|+.- .+.+..+++.+++. + ....+++|-. .+.+.++.+.. -++
T Consensus 21 ~eel~~~~~~~~~f~~~-sggGVt~SGGEPllq-~~fl~~l~~~~k~~-g----i~~~leTnG~-~~~~~~~~l~~-~~D 91 (213)
T PRK10076 21 LDALEREVMKDDIFFRT-SGGGVTLSGGEVLMQ-AEFATRFLQRLRLW-G----VSCAIETAGD-APASKLLPLAK-LCD 91 (213)
T ss_pred HHHHHHHHHhhhHhhcC-CCCEEEEeCchHHcC-HHHHHHHHHHHHHc-C----CCEEEECCCC-CCHHHHHHHHH-hcC
Confidence 67788887765443321 113588999998764 56677888888763 2 3556665543 45556655544 378
Q ss_pred eEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC--eeEEEEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeec
Q psy2378 729 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN--NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 806 (956)
Q Consensus 729 risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~--~i~~dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~ 806 (956)
.+.+-+=++|++..+.+-. .+.+.+.+.++.+.+.+. .+.+=+|=|+ .++++++++..+++.+++++.+.+-+|.+
T Consensus 92 ~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~~~~~~llpyh~ 169 (213)
T PRK10076 92 EVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLGIKQIHLLPFHQ 169 (213)
T ss_pred EEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEecCCc
Confidence 8999999999988877743 457889899998888765 4455555443 26789999999999999888887777766
Q ss_pred cCCccc------ccCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy2378 807 EPNTYF------FKYPPLSMPSNDENAVMQDKITSLLKNNYYK 843 (956)
Q Consensus 807 ~pgT~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 843 (956)
.--.+. |++...+.++.+. ...+.+.+.+.|+.
T Consensus 170 ~g~~Ky~~lg~~y~~~~~~~~~~~~----l~~~~~~~~~~gl~ 208 (213)
T PRK10076 170 YGEPKYRLLGKTWSMKEVPAPSSAD----VATMREMAERAGFQ 208 (213)
T ss_pred cchhHHHHcCCcCccCCCCCcCHHH----HHHHHHHHHHcCCe
Confidence 433332 1222333444433 33344556655544
No 420
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.25 E-value=0.3 Score=55.15 Aligned_cols=206 Identities=9% Similarity=-0.025 Sum_probs=118.7
Q ss_pred CCCCCcceeeeeeeccccc--CCcchHHHHHHHHHHHhhhcc---------cccccceeEEEe-cCCCCCCCCHHHHHHH
Q psy2378 622 YKIPYKVIINEAIELVKSF--GNIDEKKYLEALLIDVELSLP---------IILNRKIHTIFI-GGGTPSLISDTGLDYL 689 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~--~~~~~~~~v~~vl~eI~~~~~---------~~~~~~i~~i~f-gggtPs~L~~~~l~~l 689 (956)
..+-.|+..|.||.-.+.- ++-.....++.++.--+.... .....++..|-| |=|-|.. +-+.+.+.
T Consensus 112 SSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~-NydnV~~a 190 (371)
T PRK14461 112 STQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFA-NYDRWWQA 190 (371)
T ss_pred EccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchh-hHHHHHHH
Confidence 4467999999999654321 111233333333311010000 000123555555 4477743 33333333
Q ss_pred HHHHHHH--cccCCCceeEEEeCCCCCCHHHHHHHHHcCC-CeEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHHHHh
Q psy2378 690 LKNIKKL--LLFKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQ 763 (956)
Q Consensus 690 l~~i~~~--~~~~~~~eitle~np~~it~e~L~~L~~~Gv-~risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~l~~ 763 (956)
++.+... +++.. ..+|+.+ --+.+ .++.|.+.+. ..+.+.+-+-+|+..+.+ +|.+..+++.++++.-.+
T Consensus 191 i~il~d~~g~~is~-R~ITVST--~Givp-~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~ 266 (371)
T PRK14461 191 VERLHDPQGFNLGA-RSMTVST--VGLVK-GIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIA 266 (371)
T ss_pred HHHhcCccccCcCC-CceEEEe--ecchh-HHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 4444222 22221 2455443 22333 4455555443 479999999999998774 689999999999866544
Q ss_pred c-CCe--eEEEEeecCCCCCHHHHHHHHHHHHccC-----CCeEEEEeeeccCCcccccCCCCCCCCHHHHHHHHHHHHH
Q psy2378 764 Y-FNN--FNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 835 (956)
Q Consensus 764 ~-~~~--i~~dlI~GlPgqT~e~~~~tl~~~~~l~-----~~~i~~y~l~~~pgT~l~~~~~~~~~~~~~~~~~~~~~~~ 835 (956)
. +.. +..-+|=| -.+++++.++-.+++..++ +-||.+-+|.|.||+++. .|+.+... .-.+
T Consensus 267 ~t~rrit~EYvLi~g-vNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~------~ps~~~i~----~F~~ 335 (371)
T PRK14461 267 KTRRRVSFEYVLLQG-KNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG------RSERERVT----TFQR 335 (371)
T ss_pred hhCCEEEEEEEEECC-CCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC------CCCHHHHH----HHHH
Confidence 3 544 44444444 5789999999999998874 469999999999998653 24444322 3334
Q ss_pred HHHhcCch
Q psy2378 836 LLKNNYYK 843 (956)
Q Consensus 836 ~l~~~g~~ 843 (956)
.|.+.|..
T Consensus 336 ~L~~~gi~ 343 (371)
T PRK14461 336 ILTDYGIP 343 (371)
T ss_pred HHHHCCce
Confidence 46676665
No 421
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=96.22 E-value=0.024 Score=58.81 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=58.0
Q ss_pred HHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEcccc
Q psy2378 157 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 157 ~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~ 235 (956)
..+.+.|+|++.+..-.. ++......++..++.+.++++..+++||++-||| +++++.+++.. +|+|++|+++
T Consensus 110 ~~a~~~g~dyi~~~~v~~-----t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i 183 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFP-----TPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAI 183 (196)
T ss_pred HHHhHcCCCEEEECCccC-----CCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHh
Confidence 346678999998753211 0011112234578999999877656999999999 59999999887 9999999999
Q ss_pred ccCCcch
Q psy2378 236 YKNPFLM 242 (956)
Q Consensus 236 l~~P~l~ 242 (956)
...++..
T Consensus 184 ~~~~dp~ 190 (196)
T TIGR00693 184 MQAADPK 190 (196)
T ss_pred hCCCCHH
Confidence 8665543
No 422
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=96.22 E-value=0.3 Score=54.36 Aligned_cols=186 Identities=13% Similarity=0.024 Sum_probs=114.5
Q ss_pred CCCCCcceeeeeeecccccCCcchHHHHHHHHHHHhhhccccc---ccceeEEEecC-CCCCCCCHHHHHHHHHHHHHHc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPIIL---NRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~~~~~v~~vl~eI~~~~~~~~---~~~i~~i~fgg-gtPs~L~~~~l~~ll~~i~~~~ 697 (956)
..+-.|+..|.||.-.+. +-.+.-...+++.++......++ .+++..|.|.| |-|.+ +-+.+...++.+....
T Consensus 106 SsQvGC~~~C~FCaTg~~--G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~-N~dnV~~a~~i~~~~~ 182 (349)
T COG0820 106 SSQVGCPVGCTFCATGQG--GLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLL-NLDNVVKALEIINDDE 182 (349)
T ss_pred ecCCCcCCCCCeeccccc--cceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhh-hHHHHHHHHHhhcCcc
Confidence 345799999999976542 22222223445555544332222 23466665544 77754 4444444555554332
Q ss_pred ccCCC-ceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhc-CCe--eEE
Q psy2378 698 LFKKN-ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNN--FNL 770 (956)
Q Consensus 698 ~~~~~-~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~---~R~~~~~~~~~ai~~l~~~-~~~--i~~ 770 (956)
++.-. ..+| +.+.-+.+.+.++..+..=-.+.+.+.+-+++..+.+ ||.++.++..++++.-.+. +.. +-.
T Consensus 183 G~~ls~R~iT--vSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY 260 (349)
T COG0820 183 GLGLSKRRIT--VSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEY 260 (349)
T ss_pred cccccceEEE--EecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEe
Confidence 22111 2344 4455566766666543333469999999999998765 7788888888888776653 433 344
Q ss_pred EEeecCCCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCcccccC
Q psy2378 771 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815 (956)
Q Consensus 771 dlI~GlPgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT~l~~~ 815 (956)
-++=|.-.+ .++.++-++.+...+. ||.+-++-|.||+. |+.
T Consensus 261 ~Ll~~VND~-~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~-y~r 302 (349)
T COG0820 261 VLLDGVNDS-LEHAKELAKLLKGIPC-KVNLIPYNPVPGSD-YER 302 (349)
T ss_pred eecccccCC-HHHHHHHHHHhcCCCc-eEEEeecCCCCCCC-ccC
Confidence 455565444 7888777777776644 99999999999988 544
No 423
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.21 E-value=0.036 Score=62.10 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhcc-------CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCc
Q psy2378 117 PLLVSDCIKAMRDSV-------EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189 (956)
Q Consensus 117 ~~~~~eiv~~v~~~~-------~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~ 189 (956)
++.-.+.++.+++.. ...+.|-...|..+. ..+.++.|.++|+|.|.|..-.. ++ .
T Consensus 72 ~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-----~~er~~~L~~agvD~ivID~a~g----~s--------~ 134 (352)
T PF00478_consen 72 IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-----DFERAEALVEAGVDVIVIDSAHG----HS--------E 134 (352)
T ss_dssp HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-----HHHHHHHHHHTT-SEEEEE-SST----TS--------H
T ss_pred HHHHHHHHhhhccccccccccccccceEEEEecCCHH-----HHHHHHHHHHcCCCEEEccccCc----cH--------H
Confidence 444556667776532 334444555544432 35778889999999999975442 11 1
Q ss_pred CcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 190 ~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
.-.+.++++|+.+|++||| .|+|.|++.++.+++. ||+|-+|=|
T Consensus 135 ~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 135 HVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence 2347789999999889999 6779999999999988 999988865
No 424
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.21 E-value=0.013 Score=69.74 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH-----------HHH
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-----------KEI 219 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~-----------~da 219 (956)
+.+++|+..++.|+|.|++--=++...+ . .....+++.++++.+.+ .+|+..-|||+|. +++
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~---~---~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDF---P---LGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVA 340 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCC---c---ccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHH
Confidence 4689999999999999997532210001 0 11124589999999987 7999999999997 668
Q ss_pred HHHhhh-cCEEEEccccccCCcc
Q psy2378 220 DLHLNY-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 220 ~~~l~~-ad~VmiGR~~l~~P~l 241 (956)
+++|.. ||-|.||..++.||.-
T Consensus 341 ~~~l~~GadkV~i~s~Av~~~~~ 363 (538)
T PLN02617 341 SEYFRSGADKISIGSDAVYAAEE 363 (538)
T ss_pred HHHHHcCCCEEEEChHHHhChhh
Confidence 999998 9999999999999843
No 425
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=96.15 E-value=0.066 Score=58.05 Aligned_cols=166 Identities=15% Similarity=0.101 Sum_probs=111.3
Q ss_pred CCCcceeeeeeecccccCC-------cchHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHH
Q psy2378 624 IPYKVIINEAIELVKSFGN-------IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 696 (956)
Q Consensus 624 ~P~c~~~Ce~C~l~k~~~~-------~~~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~ 696 (956)
+-.|+..|-||-+.....+ ...-+..+.+..|+..... .-..+.||.|.. .......+++.+++.
T Consensus 35 TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a-------~GasiTGGdPl~-~ieR~~~~ir~LK~e 106 (353)
T COG2108 35 TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDA-------LGASITGGDPLL-EIERTVEYIRLLKDE 106 (353)
T ss_pred ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcc-------ccccccCCChHH-HHHHHHHHHHHHHHh
Confidence 4578899999986543221 1122334556666554432 335678888864 233344566666666
Q ss_pred cccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeecC
Q psy2378 697 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYAL 776 (956)
Q Consensus 697 ~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~Gl 776 (956)
|+ ...-+.+.++....++|.++.|.++|++-|.+=.-+.++. ..+.+.+.+..+++++.++++. |=.+
T Consensus 107 fG--~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~---------~~e~~i~~l~~A~~~g~dvG~E-iPai 174 (353)
T COG2108 107 FG--EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSK---------SSEKYIENLKIAKKYGMDVGVE-IPAI 174 (353)
T ss_pred hc--cceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCcccc---------ccHHHHHHHHHHHHhCccceee-cCCC
Confidence 43 4456788888889999999999999998655533121111 2457888899999988887774 4567
Q ss_pred CCCCHHHHHHHHHHHHccCCCeEEEEeeeccCCc
Q psy2378 777 PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNT 810 (956)
Q Consensus 777 PgqT~e~~~~tl~~~~~l~~~~i~~y~l~~~pgT 810 (956)
||+-. .+.+-++++.+.+.+.+++..|-.-++-
T Consensus 175 pg~e~-~i~e~~~~~~~~~~~FlNiNELE~sE~N 207 (353)
T COG2108 175 PGEEE-AILEFAKALDENGLDFLNINELEFSENN 207 (353)
T ss_pred cchHH-HHHHHHHHHHhcccceeeeeeeeeccch
Confidence 88643 4556788999999999999998876543
No 426
>PRK06801 hypothetical protein; Provisional
Probab=96.07 E-value=0.12 Score=56.61 Aligned_cols=151 Identities=11% Similarity=0.154 Sum_probs=90.5
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~-g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
.-|++++|= |.+.+. ++.+-+.||+.|.+ |+..-.+..+.+...++++..+. .+++|-.-+..
T Consensus 74 ~vpV~lHlDH~~~~e~----i~~Ai~~GftSVm~-----------D~S~l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG~ 137 (286)
T PRK06801 74 DIPVVLNLDHGLHFEA----VVRALRLGFSSVMF-----------DGSTLEYEENVRQTREVVKMCHA-VGVSVEAELGA 137 (286)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHhCCcEEEE-----------cCCCCCHHHHHHHHHHHHHHHHH-cCCeEEeecCc
Confidence 446666663 333332 22334467777766 33333344566666666666654 36666444422
Q ss_pred -CC-CCC-------C-cHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 142 -GI-DDI-------N-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 142 -g~-~~~-------~-~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
|- ++. . .+.+..+..+..++.|+|+|.++-++. .|. . ...++.+++.++++++.+ ++|++.-|
T Consensus 138 vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~--Hg~---y-~~~~~l~~e~l~~i~~~~-~~PLVlHG 210 (286)
T PRK06801 138 VGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNA--HGK---Y-KGEPKLDFARLAAIHQQT-GLPLVLHG 210 (286)
T ss_pred ccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCC--CCC---C-CCCCCCCHHHHHHHHHhc-CCCEEEEC
Confidence 21 111 0 011123333445579999999976652 221 1 113358999999999988 79999999
Q ss_pred C--CCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 212 G--IKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 212 g--I~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
| |. .+++.++++. ++.|-+++.+..
T Consensus 211 GSgi~-~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 211 GSGIS-DADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred CCCCC-HHHHHHHHHcCCcEEEehhHHHH
Confidence 8 74 6778888887 999999887643
No 427
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.06 E-value=0.14 Score=56.13 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=117.2
Q ss_pred cCcCCHHHHHHHHHcCCCcEEEecc--cccc--ccc--C--Cchhcccc-----CCCCCCEEEEe---cCCCHHHHHHHH
Q psy2378 19 MNLTDRHCRMFHRQITRYSWLYTEM--FTTQ--AIL--G--NKKHCLDF-----NAEEHPIAFQV---GDNEPKKLAKSA 82 (956)
Q Consensus 19 ~~~td~~fR~~~~~~g~~~l~~tem--~~~~--~l~--~--~~~~~~~~-----~~~~~p~~vQl---~g~~~~~~~~aA 82 (956)
.++-|..=-+++.+.| .+.+||-- +++. ++. + ...+++.. .....|+++=+ +| +|....+..
T Consensus 22 p~~~Da~SAri~e~~G-f~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG-~~~~v~r~V 99 (292)
T PRK11320 22 VGTINAYHALLAERAG-FKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFG-GAFNIARTV 99 (292)
T ss_pred cCCCCHHHHHHHHHcC-CCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCC-CHHHHHHHH
Confidence 3555666666777777 55665543 2212 221 1 01111111 22457998888 35 999999999
Q ss_pred HHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHH
Q psy2378 83 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSS 161 (956)
Q Consensus 83 ~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~ 161 (956)
+.+.++|+.+|.|-=.. .+|.+.. .++.-+-.++...+=+++++++. +.++.+--|...-....++++++=+++..+
T Consensus 100 ~~~~~aGaagi~IEDq~-~pK~cg~-~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e 177 (292)
T PRK11320 100 KSMIKAGAAAVHIEDQV-GAKRCGH-RPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE 177 (292)
T ss_pred HHHHHcCCeEEEEecCC-CccccCC-CCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH
Confidence 99999999999994432 1222222 22333335555555556666543 566766666543222346778888999999
Q ss_pred cCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEE---ecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 162 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII---NGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 162 ~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~---nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+|+|.|-+++- .+.+.++++.+.+ +.|+++ +++-.-.-+.+++-+- ...|..|-.++
T Consensus 178 AGAD~ifi~~~-----------------~~~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 178 AGADMIFPEAM-----------------TELEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred cCCCEEEecCC-----------------CCHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 99999999863 2577888888887 578843 3332111123333333 88888875543
No 428
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.98 E-value=0.02 Score=60.54 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhh---hcCE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN---YIDG 228 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~---~ad~ 228 (956)
..++|+.+.+.|++.|++--=.+. .| .+.+++.++++.+.+ ||..-|||.|.+|+++++. .||-
T Consensus 38 P~~~a~~~~~~g~~~l~ivDLd~~-~~---------~~~n~~~i~~i~~~~---~v~vgGGirs~e~~~~~~~~l~~a~r 104 (221)
T TIGR00734 38 PDDAAKVIEEIGARFIYIADLDRI-VG---------LGDNFSLLSKLSKRV---ELIADCGVRSPEDLETLPFTLEFASR 104 (221)
T ss_pred HHHHHHHHHHcCCCEEEEEEcccc-cC---------CcchHHHHHHHHhhC---cEEEcCccCCHHHHHHHHhhhccceE
Confidence 578999999999999998532210 01 235899999999863 8999999999999999854 3999
Q ss_pred EEEccccccCCcchHHHH
Q psy2378 229 VMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 229 VmiGR~~l~~P~l~~~i~ 246 (956)
|.+|..++.||.++.++.
T Consensus 105 vvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 105 VVVATETLDITELLRECY 122 (221)
T ss_pred EeecChhhCCHHHHHHhh
Confidence 999999999999988764
No 429
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.98 E-value=0.11 Score=60.51 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc--CCCCCCcH
Q psy2378 72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDINSY 149 (956)
Q Consensus 72 g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~~~~ 149 (956)
+.+++++++.|+...+.||..+-+..| .+++.-.+.++++|++++-.+.+.+-. +|+ .
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~----~ 253 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWD----V 253 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----H
Confidence 568888988888888889999998653 246666788999999986544333333 344 3
Q ss_pred HHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCC--CceEEEecCCCCHHHHHHHhhh--
Q psy2378 150 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY-- 225 (956)
Q Consensus 150 ~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~ipVi~nGgI~s~~da~~~l~~-- 225 (956)
+++.++++.|++.++.++. +. .++.+++..+++++..+ ++||.+.=.+.+..++.++++.
T Consensus 254 ~~A~~~~~~L~~~~l~~iE---------------EP-~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a 317 (415)
T cd03324 254 PEAIEWVKQLAEFKPWWIE---------------EP-TSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGA 317 (415)
T ss_pred HHHHHHHHHhhccCCCEEE---------------CC-CCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCC
Confidence 5689999999999988772 11 23458888899988763 4898877688999999999976
Q ss_pred cCEEEE
Q psy2378 226 IDGVML 231 (956)
Q Consensus 226 ad~Vmi 231 (956)
+|.+.+
T Consensus 318 ~dil~~ 323 (415)
T cd03324 318 IDVVQI 323 (415)
T ss_pred CCEEEe
Confidence 898875
No 430
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=95.94 E-value=0.19 Score=55.38 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=74.1
Q ss_pred cCChHHHHHHHHHHhhccCccEEEEecc--CCCCC----CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCC
Q psy2378 114 MTKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDI----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187 (956)
Q Consensus 114 ~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~----~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~ 187 (956)
..+.+...++++-.+. .+++|-..+.. |.++. ..+.+. +-|+.+.+.|+|+|.+.-++. .|..+. ..
T Consensus 113 eEni~~t~~v~~~a~~-~gv~vE~ElG~i~g~ed~~~g~s~~t~p-eea~~f~~tgvD~LAv~iG~v--HG~y~t---~~ 185 (293)
T PRK07315 113 EENLKLAKEVVEKAHA-KGISVEAEVGTIGGEEDGIIGKGELAPI-EDAKAMVETGIDFLAAGIGNI--HGPYPE---NW 185 (293)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEecCcccCcCccccCccCCCCH-HHHHHHHHcCCCEEeeccccc--cccCCC---CC
Confidence 3344455555444433 36777666532 21111 000112 234445578999999875542 121100 12
Q ss_pred CcCcHHHHHHHHHhCCCceEEEecC--CCCHHHHHHHhhh-cCEEEEccccccC
Q psy2378 188 PILKYNFVYNLKKDFPELEIIINGG--IKTKKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 188 ~~~~~~~i~~v~~~~~~ipVi~nGg--I~s~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
++.+|+.++++++.++++|+++-|| | +.+++.++++. ++.|-+++.+..+
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~~ 238 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQIA 238 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHHH
Confidence 3689999999999884599999999 8 57889999988 9999999998873
No 431
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=95.91 E-value=0.09 Score=58.37 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhc-cCccEEEEecc------------CCC
Q psy2378 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRI------------GID 144 (956)
Q Consensus 78 ~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~------------g~~ 144 (956)
-.+.|+.-++.|+++|-+.- -.+-+||++ +-++.+|++ +++||-.|==+ |-|
T Consensus 141 p~~iA~~Ye~~GA~aISVLT-------d~~~F~Gs~--------e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GAD 205 (338)
T PLN02460 141 PVEIAQAYEKGGAACLSVLT-------DEKYFQGSF--------ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGAD 205 (338)
T ss_pred HHHHHHHHHhCCCcEEEEec-------CcCcCCCCH--------HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCC
Confidence 35566666788999998852 234466663 456788887 89999998211 322
Q ss_pred CC------CcHHHHHHHHHHHHHcCCCEE-EEccccc----ccc-c--CCCCCCC--CCCcCcHHHHHHHHH-----hC-
Q psy2378 145 DI------NSYDFVRDFVGTVSSAGCRTF-IVHARNA----FLK-K--LNPKQNR--KIPILKYNFVYNLKK-----DF- 202 (956)
Q Consensus 145 ~~------~~~~~~~~~a~~l~~~G~~~i-~vh~r~~----~~~-g--~~~~~~~--~~~~~~~~~i~~v~~-----~~- 202 (956)
-- -+.+++.++.+...+.|.+.| .||...- ... | ..|..+| ..-..|.+...++.. .+
T Consensus 206 AVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~ 285 (338)
T PLN02460 206 AILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIR 285 (338)
T ss_pred cHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccC
Confidence 10 111356777788888887766 4774421 000 1 1122222 122356777777776 33
Q ss_pred -CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 203 -PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 203 -~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
.++-+|+-+||.+++|+..+... +|+|.||..++..|+.-..+++
T Consensus 286 ~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~ 332 (338)
T PLN02460 286 EKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAG 332 (338)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHH
Confidence 25668999999999999999988 9999999999999998777765
No 432
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=95.89 E-value=0.097 Score=64.02 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc------------CCC
Q psy2378 77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------------GID 144 (956)
Q Consensus 77 ~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------g~~ 144 (956)
+..+.|+..++.|+++|-+.- ..+.+||++ +-++.+|+.+++||-.|==+ |-|
T Consensus 71 d~~~~a~~y~~~GA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GAD 135 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLT-------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGAD 135 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCC
Confidence 345566667888999998852 234567764 45677777889999888211 222
Q ss_pred C------CCcHHHHHHHHHHHHHcCCCEE-EEccccc----cccc--CCCCCCC--CCCcCcHHHHHHHHHhCC-CceEE
Q psy2378 145 D------INSYDFVRDFVGTVSSAGCRTF-IVHARNA----FLKK--LNPKQNR--KIPILKYNFVYNLKKDFP-ELEII 208 (956)
Q Consensus 145 ~------~~~~~~~~~~a~~l~~~G~~~i-~vh~r~~----~~~g--~~~~~~~--~~~~~~~~~i~~v~~~~~-~ipVi 208 (956)
- -.+.+++.++.+...+.|.+.| .||.+.- ...| ..|..+| ..-..|.+...++...+| ++.+|
T Consensus 136 avLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~V 215 (695)
T PRK13802 136 LVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKV 215 (695)
T ss_pred EeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEE
Confidence 1 0111356777777788888776 4664421 0000 0111111 122357777888888776 47789
Q ss_pred EecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 209 INGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 209 ~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
+-+||.+++|+..+... +|+|.||.+++..|+.-..+++..
T Consensus 216 sESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~ 257 (695)
T PRK13802 216 AESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLV 257 (695)
T ss_pred EcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHH
Confidence 99999999999999988 999999999999999877777644
No 433
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.88 E-value=0.028 Score=58.44 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=93.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHcCCCE--EEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 65 PIAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 65 p~~vQl~g~~~~~~~~aA~~~~~~G~d~--IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
++..+|...|+..+.+..+.++++|+|. ||+-=|.=++|. ++ --++++++++.+++|+.|=+=..
T Consensus 1 kI~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~---~~----------g~~~i~~i~~~~~~~~DvHLMv~ 67 (201)
T PF00834_consen 1 KISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL---TF----------GPDIIKAIRKITDLPLDVHLMVE 67 (201)
T ss_dssp EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB----B-----------HHHHHHHHTTSSSEEEEEEESS
T ss_pred CeehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc---cC----------CHHHHHHHhhcCCCcEEEEeeec
Confidence 3678999999999999999999999985 555444333332 12 24567888888889998876332
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------c------------------------------ccc
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------F------------------------------LKK 178 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------~------------------------------~~g 178 (956)
+ ...+++.+.++|++.|++|.... . ..|
T Consensus 68 --~------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG 139 (201)
T PF00834_consen 68 --N------PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPG 139 (201)
T ss_dssp --S------GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TT
T ss_pred --c------HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCC
Confidence 1 12567778888888888885321 0 011
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHhC----CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccC
Q psy2378 179 LNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 238 (956)
Q Consensus 179 ~~~~~~~~~~~~~~~~i~~v~~~~----~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~ 238 (956)
++|. .+. +.-++-++++++.. .++.+..=|||+ .+.+.++.+. ||.+.+|++++.+
T Consensus 140 ~~Gq--~f~-~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 140 FGGQ--KFI-PEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TSSB----H-GGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHTS
T ss_pred CCcc--ccc-HHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 1111 000 12344555555432 248899999995 7788888887 9999999987653
No 434
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=95.86 E-value=0.092 Score=56.31 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=80.5
Q ss_pred CCCCCcceeeeeeecccccCCcc----hHHHHHHHHHHHhhhcccccccceeEEEecCCCCCCCCHHHHHHHHHHHHHHc
Q psy2378 622 YKIPYKVIINEAIELVKSFGNID----EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 697 (956)
Q Consensus 622 ~~~P~c~~~Ce~C~l~k~~~~~~----~~~~v~~vl~eI~~~~~~~~~~~i~~i~fgggtPs~L~~~~l~~ll~~i~~~~ 697 (956)
.+...|+..|.||.....+.... ..-..+.+++++..... ..+..+.|.||-|.+- ..+..+++.+++.
T Consensus 27 vR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~----~~~~~V~lTGGEPll~--~~l~~li~~l~~~- 99 (238)
T TIGR03365 27 VRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG----GTPLHVSLSGGNPALQ--KPLGELIDLGKAK- 99 (238)
T ss_pred EEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhC----CCCCeEEEeCCchhhh--HhHHHHHHHHHHC-
Confidence 34679999999998644221111 11234566666654321 2356799999999874 3577788877654
Q ss_pred ccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCeeEEEEeec
Q psy2378 698 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYA 775 (956)
Q Consensus 698 ~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L~~~~R~~~~~~~~~ai~~l~~~~~~i~~dlI~G 775 (956)
...+++++|-...++ . ++. ++.+++.+-.-+. +.....+...++++.+++ +..+.+-++++
T Consensus 100 ----g~~v~leTNGtl~~~-~---l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 100 ----GYRFALETQGSVWQD-W---FRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred ----CCCEEEECCCCCcHH-H---Hhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 347888888765443 2 333 3466666654433 222345666777777776 46677778887
No 435
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.85 E-value=0.36 Score=52.99 Aligned_cols=156 Identities=13% Similarity=0.191 Sum_probs=95.2
Q ss_pred CCCCEEEEe-cCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccc---cccCChHHHHHHHHHHhhc-cCccEE
Q psy2378 62 EEHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGA---ILMTKPLLVSDCIKAMRDS-VEIDIT 136 (956)
Q Consensus 62 ~~~p~~vQl-~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~---~l~~~~~~~~eiv~~v~~~-~~~pv~ 136 (956)
...|+++=+ .|.++..+.+.++.+.++|+.+|.|-=.+ .++.+ ..+|+ ..+-.++...+.+++++++ .+.++.
T Consensus 77 ~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~-~pk~c-g~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~ 154 (285)
T TIGR02320 77 TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKL-GLKKN-SLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFM 154 (285)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccC-CCccc-cccCCCCcccccCHHHHHHHHHHHHHhccCCCeE
Confidence 467887776 35799999999999999999999993221 01111 11222 2344566667777777765 444444
Q ss_pred EEeccC--CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC----CCceEEEe
Q psy2378 137 VKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIIN 210 (956)
Q Consensus 137 vKir~g--~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~----~~ipVi~n 210 (956)
|--|.. +.. ...+++++-+++..++|+|.|-+++.. .+.+.+.++.+.+ |++|++.+
T Consensus 155 IiARTDa~~~~-~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------------~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 155 IIARVESLILG-KGMEDALKRAEAYAEAGADGIMIHSRK----------------KDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred EEEeccccccc-CCHHHHHHHHHHHHHcCCCEEEecCCC----------------CCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 444421 111 135678999999999999999998421 1344455554443 45798876
Q ss_pred cCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 211 GGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 211 GgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
.+-...-+++++-+. +..|..|-.++
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 531111134444444 88888774443
No 436
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.82 E-value=0.12 Score=58.97 Aligned_cols=143 Identities=12% Similarity=0.148 Sum_probs=101.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEe
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKH 139 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKi 139 (956)
+.-|+-..+.+.+++++.+.++.+.+.||..+-+..|-+..+. + --.+++.-.+.++++|+.++- .+.|--
T Consensus 111 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~-----~~~~~~~D~~~i~avr~~~g~~~~l~vDa 183 (352)
T cd03325 111 DRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--D-----TSKKVDAAVERVAALREAVGPDIDIGVDF 183 (352)
T ss_pred ceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--C-----CHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 4445555566678998888887778899999999776331110 0 012356668889999998754 333333
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
-.+|+ .+++.++++.+++.|+.+|. +. .++.+|+..+++++.. ++||.+.=.+.+++++
T Consensus 184 N~~~~----~~~A~~~~~~l~~~~i~~iE---------------eP-~~~~d~~~~~~L~~~~-~~pia~dEs~~~~~~~ 242 (352)
T cd03325 184 HGRVS----KPMAKDLAKELEPYRLLFIE---------------EP-VLPENVEALAEIAART-TIPIATGERLFSRWDF 242 (352)
T ss_pred CCCCC----HHHHHHHHHhccccCCcEEE---------------CC-CCccCHHHHHHHHHhC-CCCEEecccccCHHHH
Confidence 33454 35688999999999988882 11 2235889999999987 6998887778899999
Q ss_pred HHHhhh--cCEEEEc
Q psy2378 220 DLHLNY--IDGVMLG 232 (956)
Q Consensus 220 ~~~l~~--ad~VmiG 232 (956)
..+++. +|.|.+-
T Consensus 243 ~~~~~~~~~d~v~~d 257 (352)
T cd03325 243 KELLEDGAVDIIQPD 257 (352)
T ss_pred HHHHHhCCCCEEecC
Confidence 999876 8888763
No 437
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.80 E-value=0.053 Score=56.60 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 154 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
+-+..+++.|+|+|.+-.=.. +..... .++..|+.++.+++.. ++|+++-||| +++.+.++++. +|+|.+-
T Consensus 115 eea~~A~~~g~DYv~~Gpifp-----T~tK~~-~~~~G~~~l~~~~~~~-~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 115 EEALEAEELGADYVGLGPIFP-----TSTKPD-APPLGLEGLREIRELV-NIPVVAIGGI-NLENVPEVLEAGADGVAVV 186 (211)
T ss_pred HHHHHHHhcCCCEEEECCcCC-----CCCCCC-CCccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHhCCCeEEeh
Confidence 446778889999998843210 011111 2577899999999887 6999999999 69999999998 9999999
Q ss_pred cccccCCcchHHHHH
Q psy2378 233 REAYKNPFLMSNFDL 247 (956)
Q Consensus 233 R~~l~~P~l~~~i~~ 247 (956)
|+++.+++.....++
T Consensus 187 sai~~a~d~~~a~~~ 201 (211)
T COG0352 187 SAITSAADPAAAAKA 201 (211)
T ss_pred hHhhcCCCHHHHHHH
Confidence 999988887766554
No 438
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.77 E-value=0.11 Score=59.20 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEeccCCCCCCcHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHRIGIDDINSYDF 151 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~~~~~~~~ 151 (956)
+++++++.|+...+.||..+-+..| .+++.-.+.++++|++++- .+.|-.-.+|+ .++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~----~~~ 197 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYS----RKQ 197 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC----HHH
Confidence 6888888888888899999988543 1356677889999998864 34333333444 356
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHh--CCCceEEEecCCCCHHHHHHHhhh--cC
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD--FPELEIIINGGIKTKKEIDLHLNY--ID 227 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~--~~~ipVi~nGgI~s~~da~~~l~~--ad 227 (956)
++++++.|++.++.++ ++. .++.+++..+++++. . ++||.+.=.+.+..++.++++. +|
T Consensus 198 A~~~~~~l~~~~~~~~---------------EeP-~~~~d~~~~~~l~~~~~~-~iPIa~gE~~~~~~~~~~li~~~a~d 260 (352)
T cd03328 198 ALALARAFADEGVTWF---------------EEP-VSSDDLAGLRLVRERGPA-GMDIAAGEYAYTLAYFRRLLEAHAVD 260 (352)
T ss_pred HHHHHHHHHHhCcchh---------------hCC-CChhhHHHHHHHHhhCCC-CCCEEecccccCHHHHHHHHHcCCCC
Confidence 8999999999888766 221 234588899999998 6 6999987778999999999986 88
Q ss_pred EEEE
Q psy2378 228 GVML 231 (956)
Q Consensus 228 ~Vmi 231 (956)
.|++
T Consensus 261 iv~~ 264 (352)
T cd03328 261 VLQA 264 (352)
T ss_pred EEec
Confidence 8875
No 439
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.76 E-value=0.23 Score=52.39 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=95.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc--CccEEEEec
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR 140 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 140 (956)
+.+++.=+.+.++++..+.++.+.+.|+..|||-+-.|. ..+.++.+++.. ..| .+.+.
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~------------------a~~~i~~l~~~~~~~~p-~~~vG 74 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDF------------------AHEVFAELVKYAAKELP-GMILG 74 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCc------------------HHHHHHHHHHHHHhhCC-CeEEe
Confidence 567787789999999999999999999999999774441 223334443222 122 12222
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcc---------cc-----------------cccccCCCCCCCCCCc---Cc
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA---------RN-----------------AFLKKLNPKQNRKIPI---LK 191 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~---------r~-----------------~~~~g~~~~~~~~~~~---~~ 191 (956)
.|.-- ..+-++.+.++|++++.--+ +. .+..|..- -..-| ..
T Consensus 75 aGTVl------~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~---vKlFPA~~~G 145 (222)
T PRK07114 75 VGSIV------DAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEI---VKLFPGSVYG 145 (222)
T ss_pred eEeCc------CHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCE---EEECcccccC
Confidence 22111 12334556666666664210 00 01111100 00112 23
Q ss_pred HHHHHHHHHhCCCceEEEecCCCC-HHHHHHHhhh-cCEEEEccccccCCcc
Q psy2378 192 YNFVYNLKKDFPELEIIINGGIKT-KKEIDLHLNY-IDGVMLGREAYKNPFL 241 (956)
Q Consensus 192 ~~~i~~v~~~~~~ipVi~nGgI~s-~~da~~~l~~-ad~VmiGR~~l~~P~l 241 (956)
..+++.++.-+|++|++.+|||+- .+++.++++. +.+|.+|..+..+.++
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcccc
Confidence 578899998889999999999974 5899999998 9999999988865554
No 440
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.74 E-value=0.34 Score=53.32 Aligned_cols=196 Identities=10% Similarity=0.076 Sum_probs=114.3
Q ss_pred cCcCCHHHHHHHHHcCCCcEEEe-cc-cccc--ccc--C--Cchhccc-----cCCCCCCEEEEe---cCCCHHHHHHHH
Q psy2378 19 MNLTDRHCRMFHRQITRYSWLYT-EM-FTTQ--AIL--G--NKKHCLD-----FNAEEHPIAFQV---GDNEPKKLAKSA 82 (956)
Q Consensus 19 ~~~td~~fR~~~~~~g~~~l~~t-em-~~~~--~l~--~--~~~~~~~-----~~~~~~p~~vQl---~g~~~~~~~~aA 82 (956)
.++-|..=.+++.+.| .+.+++ .. +++. ++. + ...+++. ....+.|+++=+ +|+.++ ..+.+
T Consensus 21 p~v~Da~SArl~e~aG-f~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-v~r~V 98 (294)
T TIGR02319 21 PSAYDALSAKVIQQAG-FPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMS-VWRAT 98 (294)
T ss_pred ecCcCHHHHHHHHHcC-CCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHH-HHHHH
Confidence 3556666667777777 566664 43 2222 222 1 0111111 133467999888 466666 78889
Q ss_pred HHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHH
Q psy2378 83 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSS 161 (956)
Q Consensus 83 ~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~ 161 (956)
+.+.++|+.+|.|.=... +|.+. ..++.-+-.++...+=|++++++. +.++.+--|........++++++=+++..+
T Consensus 99 ~~~~~aGaagi~IEDq~~-pK~cg-~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e 176 (294)
T TIGR02319 99 REFERVGIVGYHLEDQVN-PKRCG-HLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA 176 (294)
T ss_pred HHHHHcCCeEEEEECCCC-ccccC-CCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence 999999999999954321 22222 223332334444444445555543 345666556533222345778888999999
Q ss_pred cCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceE---EEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 162 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI---IINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 162 ~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipV---i~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+|+|.|-+++- .+.+.++++.+.+ +.|+ +..|+-...-++.++-+- .+.|..|-.++
T Consensus 177 AGAD~ifi~~~-----------------~~~~ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~ 237 (294)
T TIGR02319 177 AGADCIFLEAM-----------------LDVEEMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGW 237 (294)
T ss_pred hCCCEEEecCC-----------------CCHHHHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHH
Confidence 99999999862 2567788888887 4676 334432211234444443 88888775443
No 441
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=95.70 E-value=0.12 Score=59.33 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc--CCCCCCcHHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDINSYDF 151 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~~~~~~ 151 (956)
.++.++++++.+.+.||+.+-+..|++... .-.+.++++|++++-.+.+-+-. +|+. ++
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~----~~ 203 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTL----EE 203 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCH----HH
Confidence 677888888888889999999999987432 55678899999986544443333 4443 45
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV 229 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~V 229 (956)
.+++++.+++.++.++- + ..++-|.+..+++++.+ ++||.+.=.+.+..+++++++. +|.|
T Consensus 204 A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~div 266 (372)
T COG4948 204 AIRLARALEEYGLEWIE---------------E-PLPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HHHHHHHhcccCcceEE---------------C-CCCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCCee
Confidence 78999999999977772 1 12346889999999987 4999999999999999999997 8877
Q ss_pred EE
Q psy2378 230 ML 231 (956)
Q Consensus 230 mi 231 (956)
.+
T Consensus 267 ~~ 268 (372)
T COG4948 267 QP 268 (372)
T ss_pred cC
Confidence 65
No 442
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.59 E-value=0.13 Score=55.24 Aligned_cols=153 Identities=11% Similarity=0.165 Sum_probs=92.1
Q ss_pred CcCcCCHHHHHHHHHcCCCcEEEecccccccccCC--c-----hhcccc-----CCCCCCEEE-Ee----cCCCHHHHHH
Q psy2378 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN--K-----KHCLDF-----NAEEHPIAF-QV----GDNEPKKLAK 80 (956)
Q Consensus 18 M~~~td~~fR~~~~~~g~~~l~~tem~~~~~l~~~--~-----~~~~~~-----~~~~~p~~v-Ql----~g~~~~~~~~ 80 (956)
|.+.=|.++.+++.+.| +|.+.|.--......|. + +.++.. .....|+++ -+ ++ ++++..+
T Consensus 19 m~tayD~~sA~i~~~aG-~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~-~~e~a~~ 96 (263)
T TIGR00222 19 AITAYDYSFAKLFADAG-VDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYA-TPEQALK 96 (263)
T ss_pred EEeccCHHHHHHHHHcC-CCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCC-CHHHHHH
Confidence 34556889999998888 78888761111111121 1 111110 112344443 32 23 4777666
Q ss_pred HHHH-HHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEE---------EEeccCCC----CC
Q psy2378 81 SAKI-IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT---------VKHRIGID----DI 146 (956)
Q Consensus 81 aA~~-~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~---------vKir~g~~----~~ 146 (956)
.|.+ ++++|+++|.|--| ..+.+.++++.+ .++||. +..-.|+. ..
T Consensus 97 na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~ 156 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG-------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDE 156 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCH
Confidence 6655 56699999999532 234455666665 378887 33222221 11
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEec
Q psy2378 147 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 211 (956)
Q Consensus 147 ~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nG 211 (956)
+..+.+++-++.++++|+++|.+-+- .-+.+++|.+.+ +||+|+-|
T Consensus 157 ~~a~~~i~~A~a~e~AGA~~ivlE~v------------------p~~~a~~It~~l-~iP~iGIG 202 (263)
T TIGR00222 157 EAAKKLLEDALALEEAGAQLLVLECV------------------PVELAAKITEAL-AIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCC------------------cHHHHHHHHHhC-CCCEEeec
Confidence 22346788899999999999988642 237788999988 79998655
No 443
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.55 E-value=0.12 Score=55.56 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=92.4
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 160 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~ 160 (956)
.|+.++++|||+|=+--.+-.. ..|+--...-..+.+.+.++.|...+.+||.+-+..|+.+. ++..+.++.+.
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~---s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v~~~~ 94 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAA---SLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVRELE 94 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHH---hcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHHHHHH
Confidence 4677788899999884322110 01222222335677888889999889999999999987643 35778899999
Q ss_pred HcCCCEEEEccccc-ccccCCCCCCCCCCc-CcHHHHHHHHHhC---CCceEEEecCC-----CCHHHHHHH----hhh-
Q psy2378 161 SAGCRTFIVHARNA-FLKKLNPKQNRKIPI-LKYNFVYNLKKDF---PELEIIINGGI-----KTKKEIDLH----LNY- 225 (956)
Q Consensus 161 ~~G~~~i~vh~r~~-~~~g~~~~~~~~~~~-~~~~~i~~v~~~~---~~ipVi~nGgI-----~s~~da~~~----l~~- 225 (956)
++|+++|++-.... ...|..+.. ...++ ...+.++.+++.. ++++|++-=|. .+.+++.+. .+.
T Consensus 95 ~~G~~gv~iED~~~~k~~g~~~~~-~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AG 173 (243)
T cd00377 95 EAGAAGIHIEDQVGPKKCGHHGGK-VLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAG 173 (243)
T ss_pred HcCCEEEEEecCCCCccccCCCCC-eecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcC
Confidence 99999999954331 011211111 11111 1123344444433 24677766222 344554433 333
Q ss_pred cCEEEEccccccCCcchHHHHHh
Q psy2378 226 IDGVMLGREAYKNPFLMSNFDLN 248 (956)
Q Consensus 226 ad~VmiGR~~l~~P~l~~~i~~~ 248 (956)
||+|++=-.. ++.-+.++.+.
T Consensus 174 AD~v~v~~~~--~~~~~~~~~~~ 194 (243)
T cd00377 174 ADGIFVEGLK--DPEEIRAFAEA 194 (243)
T ss_pred CCEEEeCCCC--CHHHHHHHHhc
Confidence 9999984222 66666666553
No 444
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.48 E-value=0.21 Score=57.48 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEeccCCCCCCcHH
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHRIGIDDINSYD 150 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~~~~~~~ 150 (956)
.+++++++.|+...+.||..+-+..| -.+++.-.+.++++|+.++- .+.+-.-.+|+ .+
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg---------------~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~----~~ 219 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIG---------------GAPLDEDLRRIEAALDVLGDGARLAVDANGRFD----LE 219 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC---------------CCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----HH
Confidence 46788888888788889999999654 12355567889999998854 44443333454 35
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--c--
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I-- 226 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--a-- 226 (956)
++.++++.|++.++.+|. +. .++.+++..+++++.. ++||.+.=.+.++.++.++++. +
T Consensus 220 ~A~~~~~~l~~~~~~~iE---------------eP-~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~a~~~ 282 (385)
T cd03326 220 TAIAYAKALAPYGLRWYE---------------EP-GDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYGGMRP 282 (385)
T ss_pred HHHHHHHHhhCcCCCEEE---------------CC-CCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhCCccc
Confidence 688999999999988872 11 2346889999999987 6999988889999999999986 5
Q ss_pred --CEEEE
Q psy2378 227 --DGVML 231 (956)
Q Consensus 227 --d~Vmi 231 (956)
|.|.+
T Consensus 283 ~~div~~ 289 (385)
T cd03326 283 DRDVLQF 289 (385)
T ss_pred cCCEEEe
Confidence 77764
No 445
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.18 Score=54.27 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=94.1
Q ss_pred CCCCCEEEEe---cCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEE
Q psy2378 61 AEEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 136 (956)
Q Consensus 61 ~~~~p~~vQl---~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~ 136 (956)
..+-|++|=+ ||+ |...++.++.+.++|+.+|.|-=-. .+|.+..--|..+. +++...+=|++++++. +.++.
T Consensus 76 a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~-~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fv 152 (289)
T COG2513 76 AVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQV-GPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFV 152 (289)
T ss_pred hcCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecc-cchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeE
Confidence 3578999998 566 9999999999999999999883100 01111111233343 4444445556665554 55666
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEe---cCC
Q psy2378 137 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GGI 213 (956)
Q Consensus 137 vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~n---GgI 213 (956)
+--|...-...-++++++=+++..++|+|.|-.++.+ +.+.++++.+++ ++|+.+| .+-
T Consensus 153 i~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------------~~e~i~~f~~av-~~pl~~N~t~~g~ 214 (289)
T COG2513 153 IIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------------DLEEIRAFAEAV-PVPLPANITEFGK 214 (289)
T ss_pred EEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------------CHHHHHHHHHhc-CCCeeeEeeccCC
Confidence 6556521111125678888999999999999888764 578889999988 4666544 222
Q ss_pred CCHHHHHHHhhh-cCEEEEcc
Q psy2378 214 KTKKEIDLHLNY-IDGVMLGR 233 (956)
Q Consensus 214 ~s~~da~~~l~~-ad~VmiGR 233 (956)
+-.-++.++-+. ...|..|-
T Consensus 215 tp~~~~~~L~~~Gv~~V~~~~ 235 (289)
T COG2513 215 TPLLTVAELAELGVKRVSYGL 235 (289)
T ss_pred CCCcCHHHHHhcCceEEEECc
Confidence 111223333333 77776653
No 446
>PRK14017 galactonate dehydratase; Provisional
Probab=95.47 E-value=0.21 Score=57.68 Aligned_cols=143 Identities=10% Similarity=0.102 Sum_probs=101.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCcc--EEEEe
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID--ITVKH 139 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vKi 139 (956)
+.-|+...+.+.+|+++.+.|+.+.+.||..+-+..|=+.. . .++ ..+++.-.+.++++|+.++-. +.+--
T Consensus 112 ~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~--~---~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDa 184 (382)
T PRK14017 112 DRIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ--Y---IDS--PRKVDAAVARVAAVREAVGPEIGIGVDF 184 (382)
T ss_pred ceeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc--c---ccc--HHHHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 34456655667799999888888888999999996531110 0 000 123566788899999988543 33333
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
-.+|+ .+++.++++.|++.|+.+|. +. .++.+++..+++++.. ++||.+.=.+.++.++
T Consensus 185 N~~w~----~~~A~~~~~~l~~~~~~~iE---------------eP-~~~~d~~~~~~L~~~~-~~pIa~dEs~~~~~~~ 243 (382)
T PRK14017 185 HGRVH----KPMAKVLAKELEPYRPMFIE---------------EP-VLPENAEALPEIAAQT-SIPIATGERLFSRWDF 243 (382)
T ss_pred CCCCC----HHHHHHHHHhhcccCCCeEE---------------CC-CCcCCHHHHHHHHhcC-CCCEEeCCccCCHHHH
Confidence 33344 35688999999999988872 11 2345788899999987 6999988889999999
Q ss_pred HHHhhh--cCEEEEc
Q psy2378 220 DLHLNY--IDGVMLG 232 (956)
Q Consensus 220 ~~~l~~--ad~VmiG 232 (956)
.++++. +|.|.+-
T Consensus 244 ~~li~~~a~d~v~~d 258 (382)
T PRK14017 244 KRVLEAGGVDIIQPD 258 (382)
T ss_pred HHHHHcCCCCeEecC
Confidence 999986 8887763
No 447
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.088 Score=56.07 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc-----------
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI----------- 141 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----------- 141 (956)
.+|.+ .|+.-+++|+++|-+=- ..+-+.|+ + +-++.+++.+++||-+|==+
T Consensus 66 ~dp~~---ia~~Ye~~GAa~iSVLT-------d~~~F~Gs----~----e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~ 127 (254)
T COG0134 66 FDPVE---IAKAYEEGGAAAISVLT-------DPKYFQGS----F----EDLRAVRAAVDLPVLRKDFIIDPYQIYEARA 127 (254)
T ss_pred CCHHH---HHHHHHHhCCeEEEEec-------CccccCCC----H----HHHHHHHHhcCCCeeeccCCCCHHHHHHHHH
Confidence 44555 45556678899988731 12234444 3 44688888899999999211
Q ss_pred -CCCCC------CcHHHHHHHHHHHHHcCCCEEE-Eccccc----cccc--CCCCCCC--CCCcCcHHHHHHHHHhCC-C
Q psy2378 142 -GIDDI------NSYDFVRDFVGTVSSAGCRTFI-VHARNA----FLKK--LNPKQNR--KIPILKYNFVYNLKKDFP-E 204 (956)
Q Consensus 142 -g~~~~------~~~~~~~~~a~~l~~~G~~~i~-vh~r~~----~~~g--~~~~~~~--~~~~~~~~~i~~v~~~~~-~ 204 (956)
|-|-- -+.+.+.+++....+.|.+.++ ||...- ...| ..|..+| ..-..|.+...++....| +
T Consensus 128 ~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~ 207 (254)
T COG0134 128 AGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD 207 (254)
T ss_pred cCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC
Confidence 22210 0113467777777788877665 554321 0000 0111111 112357777888888776 3
Q ss_pred ceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHH
Q psy2378 205 LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 247 (956)
Q Consensus 205 ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~ 247 (956)
..+|.-.||.+++|+.++... +|++.||.+++.+|+....+++
T Consensus 208 ~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 208 VILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred cEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHH
Confidence 778999999999999999998 9999999999999998666554
No 448
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.42 E-value=0.13 Score=59.64 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHcCCCEEEecCCC----------C-------cceeeeCcccccccC-----
Q psy2378 62 EEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLNCGC----------P-------SNRVQNGFFGAILMT----- 115 (956)
Q Consensus 62 ~~~p~~vQl~----g~~~~~~~~aA~~~~~~G~d~IeiN~gC----------P-------~~~~~~~~~G~~l~~----- 115 (956)
..+-.|.|+. |-+++ .-..+++|||=++. | ..+.|..--|..+..
T Consensus 212 ~~~s~I~QvaSGRFGV~~~---------yL~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHH 282 (485)
T COG0069 212 DGRSAIKQVASGRFGVTPE---------YLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHH 282 (485)
T ss_pred cccceEEEeccccCccCHH---------HhCccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcc
Confidence 4567999994 66776 22346899996542 1 122233333444432
Q ss_pred ---ChHHHHHHHHHHhhcc-CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCc
Q psy2378 116 ---KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191 (956)
Q Consensus 116 ---~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~ 191 (956)
.++-+.+.|..+|+.. ..+|+||+-.+..- ..++--..++|+|.|+|+|-.+. .|-+|......-..-
T Consensus 283 DiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v-------~~iaagvakA~AD~I~IdG~~GG-TGAsP~~~~~~~GiP 354 (485)
T COG0069 283 DIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGV-------GTIAAGVAKAGADVITIDGADGG-TGASPLTSIDHAGIP 354 (485)
T ss_pred cccCHHHHHHHHHHHHhcCCCCeEEEEEecccch-------HHHHhhhhhccCCEEEEcCCCCc-CCCCcHhHhhcCCch
Confidence 4777889999999886 46799999764321 11222378999999999864421 122333222222234
Q ss_pred HHH-HHHHHHh---C---CCceEEEecCCCCHHHHHHHhhh-cCEEEEcccccc
Q psy2378 192 YNF-VYNLKKD---F---PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237 (956)
Q Consensus 192 ~~~-i~~v~~~---~---~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~ 237 (956)
|++ +.++-+. . ..+-+++.|++.|..|+...+.- ||.|-+|+++|-
T Consensus 355 ~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~li 408 (485)
T COG0069 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHH
Confidence 543 2222221 1 14789999999999999988877 999999999754
No 449
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=95.36 E-value=0.24 Score=56.65 Aligned_cols=125 Identities=9% Similarity=0.046 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCc--cEEEEec
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITVKHR 140 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir 140 (956)
..|+-....+.+++++.+.|+.+.+.||..+-+.. .+.|+++|+.++- .+.+---
T Consensus 115 ~v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN 171 (361)
T cd03322 115 GIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVH 171 (361)
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECC
Confidence 34444444567788888888777788999998732 5678999998854 4444333
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHH
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 220 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~ 220 (956)
.+|+ .+++.++++.+++.++.++. +. .++.+++..+++++.. ++||.+.=.+.+++++.
T Consensus 172 ~~w~----~~~A~~~~~~l~~~~l~~iE---------------eP-~~~~d~~~~~~L~~~~-~~pia~gE~~~~~~~~~ 230 (361)
T cd03322 172 HRLT----PNQAARFGKDVEPYRLFWME---------------DP-TPAENQEAFRLIRQHT-ATPLAVGEVFNSIWDWQ 230 (361)
T ss_pred CCCC----HHHHHHHHHHhhhcCCCEEE---------------CC-CCcccHHHHHHHHhcC-CCCEEeccCCcCHHHHH
Confidence 3454 35688999999999888873 11 2345888999999987 69988877788999999
Q ss_pred HHhhh--cCEEEE
Q psy2378 221 LHLNY--IDGVML 231 (956)
Q Consensus 221 ~~l~~--ad~Vmi 231 (956)
+++.. +|.+.+
T Consensus 231 ~~i~~~a~di~~~ 243 (361)
T cd03322 231 NLIQERLIDYIRT 243 (361)
T ss_pred HHHHhCCCCEEec
Confidence 99987 888765
No 450
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.31 E-value=0.32 Score=53.11 Aligned_cols=150 Identities=12% Similarity=0.255 Sum_probs=94.7
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~-g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
.-|+++.|= |.+.+...+| -++||+.|-+- +.--.+..+.+...++++.... .+++|-.-+..
T Consensus 74 ~vPV~lHLDH~~~~e~i~~A----i~~GftSVM~D-----------gS~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~ 137 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQA----VRAGFTSVMID-----------GAALPFEENIAFTKEAVDFAKS-YGVPVEAELGA 137 (283)
T ss_pred CCCEEEECcCCCCHHHHHHH----HHcCCCEEEEe-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecc
Confidence 446666663 3344433333 35577777763 2222344577778888877775 47777555432
Q ss_pred --CCCCC-----CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCC
Q psy2378 142 --GIDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 214 (956)
Q Consensus 142 --g~~~~-----~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~ 214 (956)
|.++. ..+-+..+..+-+++.|+|+|.+.-++. .|.. ..|..+++.+++|++.+ ++|++.-|+-.
T Consensus 138 vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~--HG~Y-----~~p~l~~~~l~~I~~~~-~vPLVlHGgSG 209 (283)
T PRK07998 138 ILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV--HGLE-----DIPRIDIPLLKRIAEVS-PVPLVIHGGSG 209 (283)
T ss_pred CCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc--ccCC-----CCCCcCHHHHHHHHhhC-CCCEEEeCCCC
Confidence 22211 0011234555667789999999987773 2211 11457999999999988 79999888877
Q ss_pred CH-HHHHHHhhh-cCEEEEccccc
Q psy2378 215 TK-KEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 215 s~-~da~~~l~~-ad~VmiGR~~l 236 (956)
.+ +++.+++.. +.-|=+++.+.
T Consensus 210 ~~~e~~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 210 IPPEILRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred CCHHHHHHHHHcCCcEEEECHHHH
Confidence 66 567777777 88888887653
No 451
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.31 E-value=0.42 Score=52.57 Aligned_cols=155 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCEEEe-------cCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHH
Q psy2378 81 SAKIIQKWGYDEINL-------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 153 (956)
Q Consensus 81 aA~~~~~~G~d~Iei-------N~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~ 153 (956)
.|+.++++||++|=+ .+|=| |+. +-..+.+.+.++.|.+.+++||++-+-.|+.+.. +..
T Consensus 27 SAri~e~aGf~ai~~ss~~va~slG~p------D~g----~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~v~ 93 (290)
T TIGR02321 27 VAKLAEQAGFGGIWGSGFELSASYAVP------DAN----ILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---NVH 93 (290)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHCCCC------Ccc----cCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHH
Q ss_pred HHHHHHHHcCCCEEEE-cccccccccC--CCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH-------HHHHHHh
Q psy2378 154 DFVGTVSSAGCRTFIV-HARNAFLKKL--NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-------KEIDLHL 223 (956)
Q Consensus 154 ~~a~~l~~~G~~~i~v-h~r~~~~~g~--~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~-------~da~~~l 223 (956)
+.++.++++|+..|++ ........|+ .++..........+.|+.+++...+.+++.|.+.... +.+++..
T Consensus 94 ~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~ 173 (290)
T TIGR02321 94 YVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQ 173 (290)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHH
Q ss_pred hh----cCEEEEccccccCCcchHHHHHhh
Q psy2378 224 NY----IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 224 ~~----ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
.+ ||+|++ -+.+.+|....++.+.+
T Consensus 174 aY~eAGAD~ifv-~~~~~~~~ei~~~~~~~ 202 (290)
T TIGR02321 174 AYEEAGADAILI-HSRQKTPDEILAFVKSW 202 (290)
T ss_pred HHHHcCCCEEEe-cCCCCCHHHHHHHHHhc
No 452
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.28 E-value=0.26 Score=53.14 Aligned_cols=162 Identities=13% Similarity=0.085 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCEEEecCC-CCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 80 KSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN~g-CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
-.|++++++||.+|=+-.+ +-...-..|+ | .-..+.+.+.++.|.+++++||+|-+-.|+.+. .+..+.++.
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~-~---~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~---~nvartV~~ 101 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPDL-G---ITTLDEVLADARRITDAVDLPVLVDIDTGFGEA---LNVARTVRE 101 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCcc-c---cccHHHHHHHHHHHHhhcCCceEEeccCCCCcH---HHHHHHHHH
Confidence 3577888999999998432 1110000121 1 123667788889999999999999999999873 356788999
Q ss_pred HHHcCCCEEEEccccc-ccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCC-----HHHH----HHHhhh-cC
Q psy2378 159 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-----KKEI----DLHLNY-ID 227 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~-~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s-----~~da----~~~l~~-ad 227 (956)
++++|+.++++---.. -..|+-+...-.......+.|+.+++..++.+++.+..... .+++ ..+.+. ||
T Consensus 102 ~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD 181 (289)
T COG2513 102 LEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGAD 181 (289)
T ss_pred HHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCc
Confidence 9999999999852211 01121111111111122344555555554445554443221 2333 233344 88
Q ss_pred EEEEccccccCCcchHHHHHhhc
Q psy2378 228 GVMLGREAYKNPFLMSNFDLNYY 250 (956)
Q Consensus 228 ~VmiGR~~l~~P~l~~~i~~~~~ 250 (956)
++.. ..+.++..++++.+.+.
T Consensus 182 ~if~--~al~~~e~i~~f~~av~ 202 (289)
T COG2513 182 AIFP--EALTDLEEIRAFAEAVP 202 (289)
T ss_pred EEcc--ccCCCHHHHHHHHHhcC
Confidence 7754 67888888888877653
No 453
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.26 E-value=0.3 Score=53.54 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=91.9
Q ss_pred HHHHHHHcCCCEEEecCCCCccee--eeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRV--QNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~--~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
.|+.++++||++|=+-..+= ... ..|. | ++ ....+.+.++.|.+++++||++-+-.|+.+. .+....++.
T Consensus 25 SAri~e~aGf~Ai~~sg~~~-a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~~tv~~ 96 (285)
T TIGR02317 25 AALLAERAGFEAIYLSGAAV-AASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEA---FNVARTVRE 96 (285)
T ss_pred HHHHHHHcCCCEEEEcHHHH-HHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHHHH
Confidence 46678889999998843211 000 0121 1 23 5666777888888899999999999998763 356788999
Q ss_pred HHHcCCCEEEEccccc-ccccCCCCCCCCCCcC-cHHHHHHHHHhCCCceEEEecCCCC-----HHHHHH----Hhhh-c
Q psy2378 159 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPIL-KYNFVYNLKKDFPELEIIINGGIKT-----KKEIDL----HLNY-I 226 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~-~~~g~~~~~~~~~~~~-~~~~i~~v~~~~~~ipVi~nGgI~s-----~~da~~----~l~~-a 226 (956)
++++|+.+|++--.+. -..|+.+... -.+.. ....|+.+++...+.+++.|.+... .+++.+ +.+. |
T Consensus 97 ~~~aG~agi~IEDq~~pK~cgh~~g~~-lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGA 175 (285)
T TIGR02317 97 MEDAGAAAVHIEDQVLPKRCGHLPGKE-LVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGA 175 (285)
T ss_pred HHHcCCeEEEEecCCCccccCCCCCcc-ccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCC
Confidence 9999999999964321 0112211100 01111 1233333444333455666665443 334332 2233 9
Q ss_pred CEEEEccccccCCcchHHHHHhh
Q psy2378 227 DGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 227 d~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
|+|++= .+.++...+++.+.+
T Consensus 176 D~vfi~--g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 176 DMIFPE--ALTSLEEFRQFAKAV 196 (285)
T ss_pred CEEEeC--CCCCHHHHHHHHHhc
Confidence 999983 355666666666543
No 454
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.18 E-value=0.11 Score=54.86 Aligned_cols=82 Identities=9% Similarity=-0.037 Sum_probs=60.9
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
+...++.|+|+|.+..=. . +.+ ...+|..++.++++++.+ ++||++-||| +++++.++++. ||+|.+-++
T Consensus 124 a~~A~~~gaDYv~~Gpv~---t--~tK--~~~~p~gl~~l~~~~~~~-~iPvvAIGGI-~~~n~~~~~~~GA~giAvisa 194 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLG---A--DNK--PEAHPRNLSLAEWWAEMI-EIPCIVQAGS-DLASAVEVAETGAEFVALERA 194 (221)
T ss_pred HHHhhhcCCCEEEECCCC---C--CCC--CCCCCCChHHHHHHHHhC-CCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHH
Confidence 344668999999986421 0 011 123456778888888877 7999999999 79999999988 999999999
Q ss_pred cccCCcchHHHH
Q psy2378 235 AYKNPFLMSNFD 246 (956)
Q Consensus 235 ~l~~P~l~~~i~ 246 (956)
++..++....++
T Consensus 195 i~~~~dp~~a~~ 206 (221)
T PRK06512 195 VFDAHDPPLAVA 206 (221)
T ss_pred hhCCCCHHHHHH
Confidence 987776554444
No 455
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.18 E-value=0.38 Score=49.56 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc---CccEEEEeccCCCCCCcHH
Q psy2378 74 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIGIDDINSYD 150 (956)
Q Consensus 74 ~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g~~~~~~~~ 150 (956)
|.+.+.+.++.+.+.|+++|.++. ++++.+++.+ .+|+.+++..+... ...+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~-~~~~ 65 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------------------------GYVRLAADALAGSDVPVIVVVGFPTGL-TTTE 65 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------------------------HHHHHHHHHhCCCCCeEEEEecCCCCC-CcHH
Confidence 889999999999999999999984 4444444443 37888887664322 2235
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhC-CCceEEE-e--cCCCCHHHHHHH---h
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIII-N--GGIKTKKEIDLH---L 223 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~ipVi~-n--GgI~s~~da~~~---l 223 (956)
++.+.++.+.++|+|++.++.-.. ...++ ....-.++++++++.. .++||+. | +...+++...++ .
T Consensus 66 ~~~~~a~~a~~~Gad~i~v~~~~~--~~~~~-----~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 66 VKVAEVEEAIDLGADEIDVVINIG--SLKEG-----DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred HHHHHHHHHHHcCCCEEEEeccHH--HHhCC-----CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999975321 00000 0012356777787764 3688763 2 222266666654 2
Q ss_pred hh--cCEEEEcccc
Q psy2378 224 NY--IDGVMLGREA 235 (956)
Q Consensus 224 ~~--ad~VmiGR~~ 235 (956)
.. +|+|=...+.
T Consensus 139 ~~~g~~~iK~~~~~ 152 (201)
T cd00945 139 AEAGADFIKTSTGF 152 (201)
T ss_pred HHhCCCEEEeCCCC
Confidence 22 8888666543
No 456
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.17 E-value=0.22 Score=53.30 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=110.5
Q ss_pred CcCCHHHHHHHHHcCCCcEEEeccc-ccccccCC-------chhcccc-----CCCCCCEEEEe---cCCCHHHHHHHHH
Q psy2378 20 NLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGN-------KKHCLDF-----NAEEHPIAFQV---GDNEPKKLAKSAK 83 (956)
Q Consensus 20 ~~td~~fR~~~~~~g~~~l~~tem~-~~~~l~~~-------~~~~~~~-----~~~~~p~~vQl---~g~~~~~~~~aA~ 83 (956)
++-|..=-+++...| ++-++|--. .+..+ |. ..+++.. ....-|+++=+ +|++|..+.+.++
T Consensus 15 ~~~D~~SAr~~e~~G-f~ai~~sg~~~a~s~-G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~ 92 (238)
T PF13714_consen 15 NVWDALSARLAERAG-FDAIATSGAGVAASL-GYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVR 92 (238)
T ss_dssp EESSHHHHHHHHHTT--SEEEEHHHHHHHHT-TS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHcC-CCEEEechHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHH
Confidence 445666666777777 566665522 22222 21 1111111 12368999888 5778999999999
Q ss_pred HHHHcCCCEEEecCC-CCcceeeeCcccccccCChHHHHHHHHHHhhcc-CccEEEEeccCC--CCCCcHHHHHHHHHHH
Q psy2378 84 IIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI--DDINSYDFVRDFVGTV 159 (956)
Q Consensus 84 ~~~~~G~d~IeiN~g-CP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~--~~~~~~~~~~~~a~~l 159 (956)
.+.++|+.+|.|.=. |. . -|..+. .++...+=+++++++. +..+.+--|... .....++++++=+++.
T Consensus 93 ~~~~aG~agi~IEDq~~~------~-~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY 164 (238)
T PF13714_consen 93 ELERAGAAGINIEDQRCG------H-GGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAY 164 (238)
T ss_dssp HHHHCT-SEEEEESBSTT------T-STT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEeeccccC------C-CCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHH
Confidence 999999999999654 32 1 344455 5555555556665544 333444445432 1223456788889999
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
.++|+|.|-+++-. +-+.++++.+.+ ++|+..+-. ...-+++++-+- ...|.+|-.
T Consensus 165 ~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~ 221 (238)
T PF13714_consen 165 AEAGADMIFIPGLQ-----------------SEEEIERIVKAV-DGPLNVNPG-PGTLSAEELAELGVKRVSYGNS 221 (238)
T ss_dssp HHTT-SEEEETTSS-----------------SHHHHHHHHHHH-SSEEEEETT-SSSS-HHHHHHTTESEEEETSH
T ss_pred HHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHH
Confidence 99999999998753 445688888888 699877663 212344444444 777777644
No 457
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.16 E-value=0.28 Score=53.98 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCEEEec--------CCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHH
Q psy2378 80 KSAKIIQKWGYDEINLN--------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 151 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN--------~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 151 (956)
-.|+.++++||++|=+- .|=| |. | + -..+.+.+.++.|..++++||++-+-.|+.+.. +
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~p------D~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~---~ 93 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLP------DL-G--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAM---S 93 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCC------Cc-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---H
Confidence 35778888999999762 1222 21 1 2 235566778888888899999999999986643 3
Q ss_pred HHHHHHHHHHcCCCEEEEccccc-ccccCCCCCCCCCCcCcHHHHHHH---HHhCCCceEEEecCCCC-----HHHHH--
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNL---KKDFPELEIIINGGIKT-----KKEID-- 220 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~-~~~g~~~~~~~~~~~~~~~~i~~v---~~~~~~ipVi~nGgI~s-----~~da~-- 220 (956)
....++.++++|+.+|++--.+. -..|+.+... -.+. -+++.+| ++...+.+++.|.+... .+++.
T Consensus 94 v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~-lv~~--ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~R 170 (294)
T TIGR02319 94 VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKR-LIST--EEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRR 170 (294)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCccccCCCCCcc-ccCH--HHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHH
Confidence 56789999999999999953221 0112111100 0111 1334444 33322344555554432 33332
Q ss_pred --HHhhh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 221 --LHLNY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 221 --~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
.+.+. ||+|++- .+.++....++.+.+
T Consensus 171 a~aY~eAGAD~ifi~--~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 171 SREYVAAGADCIFLE--AMLDVEEMKRVRDEI 200 (294)
T ss_pred HHHHHHhCCCEEEec--CCCCHHHHHHHHHhc
Confidence 22233 9999993 378888888877754
No 458
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.15 E-value=0.13 Score=54.05 Aligned_cols=86 Identities=6% Similarity=-0.030 Sum_probs=62.4
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
+..+++.|+|++.+..=.. +.....+.++..|+.+.++.+...++||++-|||+ ++++.++++. ++||.+-++
T Consensus 115 ~~~A~~~gaDYi~lgpvf~-----T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisa 188 (211)
T PRK03512 115 IDVALAARPSYIALGHVFP-----TQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSA 188 (211)
T ss_pred HHHHhhcCCCEEEECCccC-----CCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhH
Confidence 4556788999999864211 00011133457888888887764369999999995 9999999988 999999999
Q ss_pred cccCCcchHHHHH
Q psy2378 235 AYKNPFLMSNFDL 247 (956)
Q Consensus 235 ~l~~P~l~~~i~~ 247 (956)
+...+++-..+++
T Consensus 189 i~~~~d~~~~~~~ 201 (211)
T PRK03512 189 ITQAADWRAATAQ 201 (211)
T ss_pred hhCCCCHHHHHHH
Confidence 9887776555543
No 459
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.14 E-value=0.22 Score=53.66 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=65.7
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCcc-EEEEeccCCCCCCcHHHHHHH-HHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDF-VGT 158 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g~~~~~~~~~~~~~-a~~ 158 (956)
.|+.++++|||.|= .|....+.. -|+-....-..+.+...+++|++.++.| |++-+..|.-. ++.++..+. .+.
T Consensus 24 sA~l~e~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~-~~~~~av~~a~r~ 99 (254)
T cd06557 24 TAKLADEAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQ-TSPEQALRNAARL 99 (254)
T ss_pred HHHHHHHcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCccc-CCHHHHHHHHHHH
Confidence 46778889999994 343333222 2333333446778888889999999999 66666423211 223444444 455
Q ss_pred HHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEE
Q psy2378 159 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 208 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi 208 (956)
++++|+++|.+-+.. ...+.|+.+++. .|||+
T Consensus 100 ~~~aGa~aVkiEd~~----------------~~~~~I~al~~a--gipV~ 131 (254)
T cd06557 100 MKEAGADAVKLEGGA----------------EVAETIRALVDA--GIPVM 131 (254)
T ss_pred HHHhCCeEEEEcCcH----------------HHHHHHHHHHHc--CCCee
Confidence 556999999997642 123456666654 58888
No 460
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.13 E-value=0.37 Score=50.14 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=90.2
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCC
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 213 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI 213 (956)
|+..=+|.- +.++..++++.|.+.|+..+.|+-|+ |..++.++++++.+|+ -++|.|.|
T Consensus 9 ~liaVlr~~-----~~e~a~~~~~al~~~Gi~~iEit~~t---------------~~a~~~i~~l~~~~~~-~~vGAGTV 67 (204)
T TIGR01182 9 KIVPVIRID-----DVDDALPLAKALIEGGLRVLEVTLRT---------------PVALDAIRLLRKEVPD-ALIGAGTV 67 (204)
T ss_pred CEEEEEecC-----CHHHHHHHHHHHHHcCCCEEEEeCCC---------------ccHHHHHHHHHHHCCC-CEEEEEeC
Confidence 455556652 23568899999999999999999877 2456889999988865 46899999
Q ss_pred CCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCC-HHHHH
Q psy2378 214 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVT-PNAIN 291 (956)
Q Consensus 214 ~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t-~~~v~ 291 (956)
.|+++++++++. |++++. =+ .||.+.+..++. +-...+...|+.|+...+..-.+ .--++++.... +..++
T Consensus 68 l~~~~a~~a~~aGA~Fivs-P~--~~~~v~~~~~~~--~i~~iPG~~TptEi~~A~~~Ga~--~vKlFPA~~~GG~~yik 140 (204)
T TIGR01182 68 LNPEQLRQAVDAGAQFIVS-PG--LTPELAKHAQDH--GIPIIPGVATPSEIMLALELGIT--ALKLFPAEVSGGVKMLK 140 (204)
T ss_pred CCHHHHHHHHHcCCCEEEC-CC--CCHHHHHHHHHc--CCcEECCCCCHHHHHHHHHCCCC--EEEECCchhcCCHHHHH
Confidence 999999999998 999853 22 277777666542 22221235678887766543322 11245555443 55444
Q ss_pred HHHH
Q psy2378 292 FMSK 295 (956)
Q Consensus 292 fm~~ 295 (956)
-+..
T Consensus 141 al~~ 144 (204)
T TIGR01182 141 ALAG 144 (204)
T ss_pred HHhc
Confidence 4443
No 461
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.11 E-value=0.29 Score=55.48 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=97.8
Q ss_pred CCCEEEEe-cCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEe--
Q psy2378 63 EHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-- 139 (956)
Q Consensus 63 ~~p~~vQl-~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-- 139 (956)
.-|+-... +..+++++++.|+.+.+.||..+-+..|.. + .+ -..+++.-.+.+++||+.++-.+.+.+
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~-~---~~-----~~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYG-P---SD-----GHAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-C---Cc-----chHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 34444443 346889998888888889999999976531 0 00 012356778889999998854333333
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHH
Q psy2378 140 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 219 (956)
Q Consensus 140 r~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da 219 (956)
-.+|+ .+++.++++.|++.++.++. +. .++.+++..+++++.. ++||.+.=.+.+..++
T Consensus 179 n~~~~----~~~A~~~~~~l~~~~~~~iE---------------eP-~~~~d~~~~~~l~~~~-~~pIa~gE~~~~~~~~ 237 (341)
T cd03327 179 YMSWN----LNYAIKMARALEKYELRWIE---------------EP-LIPDDIEGYAELKKAT-GIPISTGEHEYTVYGF 237 (341)
T ss_pred CCCCC----HHHHHHHHHHhhhcCCcccc---------------CC-CCccCHHHHHHHHhcC-CCCeEeccCccCHHHH
Confidence 23343 35688999999998877662 21 2345888899999987 7998887778899999
Q ss_pred HHHhhh--cCEEEE
Q psy2378 220 DLHLNY--IDGVML 231 (956)
Q Consensus 220 ~~~l~~--ad~Vmi 231 (956)
.++++. +|.|++
T Consensus 238 ~~~i~~~a~d~i~~ 251 (341)
T cd03327 238 KRLLEGRAVDILQP 251 (341)
T ss_pred HHHHHcCCCCEEec
Confidence 999986 888875
No 462
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.06 E-value=0.93 Score=47.98 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=97.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEE--EecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 140 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~I--eiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 140 (956)
..++.++|...|+..+.+-.++++++|+|.+ |+-=|.=++|. .+| | .+++++++ +.|+.|=+=
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi---tfG------p----~~i~~i~~--~~~~DvHLM 76 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF---TVG------A----IAIKQFPT--HCFKDVHLM 76 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc---ccC------H----HHHHHhCC--CCCEEEEec
Confidence 4578899999999999999999999998864 44334333332 122 3 34566653 556655443
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccc-c-------------c--cc---------------------------
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-A-------------F--LK--------------------------- 177 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~-~-------------~--~~--------------------------- 177 (956)
.. + ..++++.+.++|+|.|++|.-. . . ..
T Consensus 77 v~--~------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMt 148 (228)
T PRK08091 77 VR--D------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILT 148 (228)
T ss_pred cC--C------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEE
Confidence 31 1 2467778888888888887431 0 0 01
Q ss_pred ---cCCCCCCCCCCcCcHHHHHHHHHhC----CCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHH
Q psy2378 178 ---KLNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSN 244 (956)
Q Consensus 178 ---g~~~~~~~~~~~~~~~~i~~v~~~~----~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~ 244 (956)
|+.|+ .+. +.-++-|+++++.. .++.+-.-|||+ .+.+.++.+. ||.+.+|+++..+++.-+.
T Consensus 149 V~PGfgGQ--~f~-~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d~~~~ 219 (228)
T PRK08091 149 LDPRTGTK--APS-DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFSQGELKTT 219 (228)
T ss_pred ECCCCCCc--ccc-HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhCCCCHHHH
Confidence 11111 000 11234455555431 146688899995 8899998888 9999999999888774333
No 463
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.05 E-value=0.11 Score=58.40 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=59.1
Q ss_pred HHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccc
Q psy2378 156 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 156 a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~ 234 (956)
+..+.+.|+|+|.+.+-.. ++.. ....+..++.+..+++.. ++||++-|||+ ++++.+++.. +|+|.++++
T Consensus 253 ~~~A~~~GaDYI~lGPvf~-----T~tK-p~~~~~Gle~l~~~~~~~-~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisa 324 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFP-----TPTK-PGKAPAGLEYLKYAAKEA-PIPWFAIGGID-KSNIPEVLQAGAKRVAVVRA 324 (347)
T ss_pred HHHHHHcCCCEEEECCCcC-----CCCC-CCCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCcEEEEeHH
Confidence 4455678999998864321 0001 112356899999998887 69999999995 9999999887 999999999
Q ss_pred cccCCcchH
Q psy2378 235 AYKNPFLMS 243 (956)
Q Consensus 235 ~l~~P~l~~ 243 (956)
++..++...
T Consensus 325 I~~a~dp~~ 333 (347)
T PRK02615 325 IMGAEDPKQ 333 (347)
T ss_pred HhCCCCHHH
Confidence 987555433
No 464
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.00 E-value=0.13 Score=57.78 Aligned_cols=94 Identities=14% Similarity=0.310 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHH
Q psy2378 117 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 196 (956)
Q Consensus 117 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~ 196 (956)
++...+.++.++....+ -.-.+.. ++..+.++.+.++|++.|.++... |.+ ..-++.++
T Consensus 69 ~~~~~~~i~~vk~~l~v----~~~~~~~-----~~~~~~~~~l~eagv~~I~vd~~~----G~~--------~~~~~~i~ 127 (325)
T cd00381 69 IEEQAEEVRKVKGRLLV----GAAVGTR-----EDDKERAEALVEAGVDVIVIDSAH----GHS--------VYVIEMIK 127 (325)
T ss_pred HHHHHHHHHHhccCceE----EEecCCC-----hhHHHHHHHHHhcCCCEEEEECCC----CCc--------HHHHHHHH
Confidence 45556677777643322 2223322 124577888889999999986532 110 12357889
Q ss_pred HHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 197 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 197 ~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
++++..|++||++ |.+.|+++++++++. ||+|.+|
T Consensus 128 ~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 128 FIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 9998876789887 999999999999988 9999984
No 465
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.99 E-value=0.3 Score=53.80 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhcc--CccEEEEeccCCCCCCcHH
Q psy2378 73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 150 (956)
Q Consensus 73 ~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 150 (956)
-|.+.+.+-.+.+.+.|+++|=+|.. .|-...-..+.-.++++.+++.+ .+||.+-+... +.+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~Gs----------tGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-----~~~ 79 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGT----------TGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN-----STR 79 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc-----cHH
Confidence 47889999999999999999988753 23333444555567777777666 46777665432 234
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEE------EecCCCCHHHHHHHhh
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII------INGGIKTKKEIDLHLN 224 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi------~nGgI~s~~da~~~l~ 224 (956)
+++++++.++++|+|++.+...... . .....-.++..+|.+.. ++||+ .+|--.+++.+.++.+
T Consensus 80 ~~i~~a~~a~~~Gad~v~v~pP~y~--~-------~~~~~~~~~~~~ia~~~-~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 80 EAIELARHAEEAGADGVLVVPPYYN--K-------PSQEGIVAHFKAVADAS-DLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCC--C-------CCHHHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHhc
Confidence 6889999999999999999765410 0 01112346677788776 79987 4576778888887764
No 466
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.99 E-value=0.3 Score=53.65 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=91.6
Q ss_pred HHHHHHHcCCCEEEecCC-CC-cceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCG-CP-SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 158 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~g-CP-~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~ 158 (956)
.|+.++++||++|=+-.. +- ...-..|. | +-..+.+.+.++.|.+.+++||++-+-.|+.+. .+..+.++.
T Consensus 29 SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~r~V~~ 101 (292)
T PRK11320 29 HALLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGA---FNIARTVKS 101 (292)
T ss_pred HHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHHHH
Confidence 467888899999987432 11 00000121 1 234666788888899999999999999998742 356788999
Q ss_pred HHHcCCCEEEEccccc-ccccCCCCCCCCCCcCcHHHHHHHH---HhCCCceEEEecCCCC-----HHHHH----HHhhh
Q psy2378 159 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKT-----KKEID----LHLNY 225 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~-~~~g~~~~~~~~~~~~~~~~i~~v~---~~~~~ipVi~nGgI~s-----~~da~----~~l~~ 225 (956)
++++|+.+|++--... -..|+.+. ...-+.+ +++.+|+ +...+.+++.|.+... .+++. .+.+.
T Consensus 102 ~~~aGaagi~IEDq~~pK~cg~~~~--~~lv~~e-e~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eA 178 (292)
T PRK11320 102 MIKAGAAAVHIEDQVGAKRCGHRPN--KEIVSQE-EMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEA 178 (292)
T ss_pred HHHcCCeEEEEecCCCccccCCCCC--CcccCHH-HHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHc
Confidence 9999999999953221 01121110 1111111 3344443 3322445666555443 33433 22333
Q ss_pred -cCEEEEccccccCCcchHHHHHhh
Q psy2378 226 -IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 226 -ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
||+|++- .+.++.-.+++.+.+
T Consensus 179 GAD~ifi~--~~~~~~~i~~~~~~~ 201 (292)
T PRK11320 179 GADMIFPE--AMTELEMYRRFADAV 201 (292)
T ss_pred CCCEEEec--CCCCHHHHHHHHHhc
Confidence 9999984 366777666666543
No 467
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=94.87 E-value=0.39 Score=55.83 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=96.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcc---eeeeCc----ccc--cc----------cCChHHHHHHHHHHhhc
Q psy2378 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN---RVQNGF----FGA--IL----------MTKPLLVSDCIKAMRDS 130 (956)
Q Consensus 70 l~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~---~~~~~~----~G~--~l----------~~~~~~~~eiv~~v~~~ 130 (956)
+.+.+++++.+-|+.+.+.||..+-+..|-|-. .....+ ++- .. ...++...+.|++||++
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 356688888777777778899999998764310 000000 000 00 01235557899999998
Q ss_pred cCccEEEEecc--CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEE
Q psy2378 131 VEIDITVKHRI--GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 208 (956)
Q Consensus 131 ~~~pv~vKir~--g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi 208 (956)
++-.+.+.+-. +|+ .+++.++++.|++.++.+|- +. .++.+++..+++++.. ++||.
T Consensus 203 ~G~~~~l~vDaN~~w~----~~~A~~~~~~l~~~~l~~iE---------------eP-~~~~d~~~~~~L~~~~-~iPIa 261 (404)
T PRK15072 203 FGFDLHLLHDVHHRLT----PIEAARLGKSLEPYRLFWLE---------------DP-TPAENQEAFRLIRQHT-TTPLA 261 (404)
T ss_pred hCCCceEEEECCCCCC----HHHHHHHHHhccccCCcEEE---------------CC-CCccCHHHHHHHHhcC-CCCEE
Confidence 86444333332 343 45688999999999888773 11 2345788899999987 79998
Q ss_pred EecCCCCHHHHHHHhhh--cCEEEE
Q psy2378 209 INGGIKTKKEIDLHLNY--IDGVML 231 (956)
Q Consensus 209 ~nGgI~s~~da~~~l~~--ad~Vmi 231 (956)
+.=.+.++.+++++++. +|.|.+
T Consensus 262 ~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 262 VGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred eCcCccCHHHHHHHHHcCCCCEEec
Confidence 87778999999999987 898876
No 468
>PRK08185 hypothetical protein; Provisional
Probab=94.83 E-value=0.38 Score=52.63 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=68.5
Q ss_pred ccCChHHHHHHHHHHhhccCccEEEEecc-CCC-CC----Cc---HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCC
Q psy2378 113 LMTKPLLVSDCIKAMRDSVEIDITVKHRI-GID-DI----NS---YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183 (956)
Q Consensus 113 l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~~-~~----~~---~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~ 183 (956)
+..+-+...++++..+. .+++|-..+.. |.. +. .+ +-+..+..+..++.|+|+|.+.-++. .|.. .
T Consensus 104 ~eeNi~~t~~vv~~a~~-~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~--HG~y--~ 178 (283)
T PRK08185 104 YEENVALTKEVVELAHK-VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTA--HGIY--P 178 (283)
T ss_pred HHHHHHHHHHHHHHHHH-cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcc--cCCc--C
Confidence 34456666666665553 47777766632 211 11 00 11233444455667999999965552 1110 1
Q ss_pred CCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHH-HHHHHhhh-cCEEEEccc
Q psy2378 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 184 ~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~-da~~~l~~-ad~VmiGR~ 234 (956)
....+..+++.++++++.+ ++|++.-||+..++ +.+++++. +.=|=+++.
T Consensus 179 ~~~kp~L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~ 230 (283)
T PRK08185 179 KDKKPELQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSD 230 (283)
T ss_pred CCCCCCcCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChH
Confidence 1112457899999999988 79999999997664 45566654 544555443
No 469
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.82 E-value=0.66 Score=48.76 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=87.8
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCc--eEEEec
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL--EIIING 211 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~i--pVi~nG 211 (956)
|+..=+|.. +.+++..+++.|.+.|+..+.|+-|+ |...+.++++++.+++- -++|.|
T Consensus 14 ~vi~vir~~-----~~~~a~~~~~al~~~Gi~~iEit~~~---------------~~a~~~i~~l~~~~~~~p~~~vGaG 73 (213)
T PRK06552 14 GVVAVVRGE-----SKEEALKISLAVIKGGIKAIEVTYTN---------------PFASEVIKELVELYKDDPEVLIGAG 73 (213)
T ss_pred CEEEEEECC-----CHHHHHHHHHHHHHCCCCEEEEECCC---------------ccHHHHHHHHHHHcCCCCCeEEeee
Confidence 455556753 23568999999999999999999887 24568899998877432 379999
Q ss_pred CCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCCHHHH
Q psy2378 212 GIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAI 290 (956)
Q Consensus 212 gI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t~~~v 290 (956)
.|.|+++++++++. +++++- =-.||.+.+..++ .+-...+...|..|....+..-.. ... ++++...++..+
T Consensus 74 TV~~~~~~~~a~~aGA~Fivs---P~~~~~v~~~~~~--~~i~~iPG~~T~~E~~~A~~~Gad-~vk-lFPa~~~G~~~i 146 (213)
T PRK06552 74 TVLDAVTARLAILAGAQFIVS---PSFNRETAKICNL--YQIPYLPGCMTVTEIVTALEAGSE-IVK-LFPGSTLGPSFI 146 (213)
T ss_pred eCCCHHHHHHHHHcCCCEEEC---CCCCHHHHHHHHH--cCCCEECCcCCHHHHHHHHHcCCC-EEE-ECCcccCCHHHH
Confidence 99999999999998 999883 2334444444332 121211235677777766532211 111 344555555555
Q ss_pred HHHHHhh
Q psy2378 291 NFMSKYA 297 (956)
Q Consensus 291 ~fm~~y~ 297 (956)
+.+....
T Consensus 147 k~l~~~~ 153 (213)
T PRK06552 147 KAIKGPL 153 (213)
T ss_pred HHHhhhC
Confidence 4444433
No 470
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=94.76 E-value=0.6 Score=53.57 Aligned_cols=136 Identities=11% Similarity=0.156 Sum_probs=91.9
Q ss_pred CCCCEEEEecCCCHHHHHH-HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec
Q psy2378 62 EEHPIAFQVGDNEPKKLAK-SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 140 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~-aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 140 (956)
+.-|+-..+...++++..+ +....++.||..+-+-.| + ++++.-.+.|+++|+.++-.+ +++
T Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~--~l~ 191 (368)
T TIGR02534 129 DSVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRA--SVR 191 (368)
T ss_pred CceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCc--EEE
Confidence 3445555555556554444 444444579999988543 1 245566788899998886543 344
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHH
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 220 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~ 220 (956)
+.....-+.+++.++++.|++.++.+|. +. .++.+++..+++++.. ++||.+.=.+.++.++.
T Consensus 192 ~DaN~~~~~~~A~~~~~~l~~~~~~~iE---------------eP-~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~ 254 (368)
T TIGR02534 192 VDVNAAWDERTALHYLPQLADAGVELIE---------------QP-TPAENREALARLTRRF-NVPIMADESVTGPADAL 254 (368)
T ss_pred EECCCCCCHHHHHHHHHHHHhcChhheE---------------CC-CCcccHHHHHHHHHhC-CCCEEeCcccCCHHHHH
Confidence 4222222345688999999998877652 11 2235788888999887 69999888899999999
Q ss_pred HHhhh--cCEEEE
Q psy2378 221 LHLNY--IDGVML 231 (956)
Q Consensus 221 ~~l~~--ad~Vmi 231 (956)
+++.. +|+|.+
T Consensus 255 ~~~~~~~~d~~~~ 267 (368)
T TIGR02534 255 AIAKASAADVFAL 267 (368)
T ss_pred HHHHhCCCCEEEE
Confidence 99886 898765
No 471
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.75 E-value=0.43 Score=52.01 Aligned_cols=132 Identities=13% Similarity=0.137 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
.-|+..-+.+.++ +..+.++...+.||..+-+..| ..+++.-.+.++++++.++-.+.+.+..+
T Consensus 72 ~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN 135 (263)
T cd03320 72 RIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDAN 135 (263)
T ss_pred CcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 3455555667777 4445566667789999988654 12345567788999988754443333222
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 222 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~ 222 (956)
..-+.+++.++++.|++.++.+|. +. .++.+++..++++ . ++||.+.=.+.++.++.++
T Consensus 136 --~~w~~~~A~~~~~~l~~~~i~~iE---------------qP-~~~~d~~~~~~l~--~-~~PIa~dEs~~~~~~~~~~ 194 (263)
T cd03320 136 --GGWSLEEALAFLEALAAGRIEYIE---------------QP-LPPDDLAELRRLA--A-GVPIALDESLRRLDDPLAL 194 (263)
T ss_pred --CCCCHHHHHHHHHhhcccCCceEE---------------CC-CChHHHHHHHHhh--c-CCCeeeCCccccccCHHHH
Confidence 212235688999999998887772 11 1235777777776 4 6999988788899999999
Q ss_pred hhh--cCEEEE
Q psy2378 223 LNY--IDGVML 231 (956)
Q Consensus 223 l~~--ad~Vmi 231 (956)
++. +|.|++
T Consensus 195 ~~~~~~d~v~~ 205 (263)
T cd03320 195 AAAGALGALVL 205 (263)
T ss_pred HhcCCCCEEEE
Confidence 886 888876
No 472
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.75 E-value=0.49 Score=54.26 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE
Q psy2378 152 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 230 (956)
Q Consensus 152 ~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm 230 (956)
..+.++.|.++|+|.|.+....+ . +..-++.++++++.+|+++|| .|+|.|+++++.+++. +|+|.
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g----~--------~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHG----H--------STRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC----C--------ChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 56788999999999999865431 1 113457899999988888755 7899999999999988 99998
Q ss_pred Ecc
Q psy2378 231 LGR 233 (956)
Q Consensus 231 iGR 233 (956)
+|=
T Consensus 221 vG~ 223 (404)
T PRK06843 221 VGI 223 (404)
T ss_pred ECC
Confidence 763
No 473
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.65 E-value=0.52 Score=53.78 Aligned_cols=131 Identities=13% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCH-HHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec
Q psy2378 62 EEHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 140 (956)
Q Consensus 62 ~~~p~~vQl~g~~~-~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 140 (956)
+..|+-..+...++ +++.+.++.+.+.||..+-+..+ ++.-.+.+++||+.++ .++++
T Consensus 124 ~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~------------------~~~d~~~l~~vr~~~g---~~~l~ 182 (354)
T cd03317 124 DSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK------------------PGWDVEPLKAVRERFP---DIPLM 182 (354)
T ss_pred CeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC------------------hHHHHHHHHHHHHHCC---CCeEE
Confidence 34455445544444 88888888888889999988653 1223566888888875 45555
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHH
Q psy2378 141 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 220 (956)
Q Consensus 141 ~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~ 220 (956)
+.....-+.+++ .+++.|++.++.+|. + ..++.+|+..+++++.. ++||.+.=.+.+++++.
T Consensus 183 lDaN~~~~~~~a-~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pia~dEs~~~~~~~~ 244 (354)
T cd03317 183 ADANSAYTLADI-PLLKRLDEYGLLMIE---------------Q-PLAADDLIDHAELQKLL-KTPICLDESIQSAEDAR 244 (354)
T ss_pred EECCCCCCHHHH-HHHHHhhcCCccEEE---------------C-CCChhHHHHHHHHHhhc-CCCEEeCCccCCHHHHH
Confidence 532222222344 468889888877772 1 12245788889999887 69998877899999999
Q ss_pred HHhhh--cCEEEE
Q psy2378 221 LHLNY--IDGVML 231 (956)
Q Consensus 221 ~~l~~--ad~Vmi 231 (956)
++++. +|.+.+
T Consensus 245 ~~~~~~~~d~~~i 257 (354)
T cd03317 245 KAIELGACKIINI 257 (354)
T ss_pred HHHHcCCCCEEEe
Confidence 99986 898876
No 474
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.61 E-value=0.46 Score=50.85 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=94.1
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccC-ccEEEEeccCCCCCCcHHHHHHHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTV 159 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~~~~~a~~l 159 (956)
.|+.++++|||+|=+--+... ...||=....-..+.+...+++|++.+. .||++-+-.|+... .++..+.++++
T Consensus 24 sA~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~~l 98 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAKTF 98 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHHHH
Confidence 466778889999988322111 1112211122357778888899988885 79999999987753 24678889999
Q ss_pred HHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCC---------------CHHHHHHHh-
Q psy2378 160 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK---------------TKKEIDLHL- 223 (956)
Q Consensus 160 ~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~---------------s~~da~~~l- 223 (956)
.++|+++|++-... ...+.++.+++. .+||++==|.. +.+.+++++
T Consensus 99 ~~aGa~gv~iED~~----------------~~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~ 160 (240)
T cd06556 99 MRAGAAGVKIEGGE----------------WHIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIA 160 (240)
T ss_pred HHcCCcEEEEcCcH----------------HHHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHH
Confidence 99999999997642 123456666665 48888665552 223344443
Q ss_pred ------hh-cCEEEEccccccCCcchHHHHHhh
Q psy2378 224 ------NY-IDGVMLGREAYKNPFLMSNFDLNY 249 (956)
Q Consensus 224 ------~~-ad~VmiGR~~l~~P~l~~~i~~~~ 249 (956)
+. ||+|.+= +. ++...+++.+.+
T Consensus 161 Ra~ay~~AGAd~i~~e-~~--~~e~~~~i~~~~ 190 (240)
T cd06556 161 DALAYAPAGADLIVME-CV--PVELAKQITEAL 190 (240)
T ss_pred HHHHHHHcCCCEEEEc-CC--CHHHHHHHHHhC
Confidence 33 9999985 33 777777777653
No 475
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=94.59 E-value=1.2 Score=47.15 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=70.0
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCC-
Q psy2378 68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI- 146 (956)
Q Consensus 68 vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~- 146 (956)
|.|.+.+.+++.+.++.+...|+|.|||-. |.+.. .....+.+.+..+++.+++|+.+=+|.-++.+
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRl---------D~l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~ 69 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRL---------DYLEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR 69 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEG---------GGSTT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEe---------ccccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence 678999999999999888888999999965 32222 56788899999999988999999998743332
Q ss_pred --CcHHHHHHHHHHHHHcCCCEEEEccc
Q psy2378 147 --NSYDFVRDFVGTVSSAGCRTFIVHAR 172 (956)
Q Consensus 147 --~~~~~~~~~a~~l~~~G~~~i~vh~r 172 (956)
.+.+.-.++.+.+.+.|+++|.|...
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 22345678888999999999999755
No 476
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=94.59 E-value=0.49 Score=53.28 Aligned_cols=131 Identities=12% Similarity=0.151 Sum_probs=90.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 62 ~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
+.-|+-..+...+|+++++.|+...+.||..+-+-.+ ++.-.+.++++|+.+ | .+++++
T Consensus 120 ~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~------------------~~~d~~~v~~vr~~~--~-~~~l~v 178 (324)
T TIGR01928 120 DKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT------------------PQIMHQLVKLRRLRF--P-QIPLVI 178 (324)
T ss_pred CeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC------------------CchhHHHHHHHHHhC--C-CCcEEE
Confidence 3445555566678899998888888889999988542 111246788888876 3 345555
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~ 221 (956)
.....-+.+++ ..++.+++.++.++. +. .++.+++..+++++.. ++||.+.=.+.++.++.+
T Consensus 179 DaN~~~~~~~a-~~~~~l~~~~~~~iE---------------eP-~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~ 240 (324)
T TIGR01928 179 DANESYDLQDF-PRLKELDRYQLLYIE---------------EP-FKIDDLSMLDELAKGT-ITPICLDESITSLDDARN 240 (324)
T ss_pred ECCCCCCHHHH-HHHHHHhhCCCcEEE---------------CC-CChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHH
Confidence 32221122333 567889998887772 11 1235788899999987 699998888999999999
Q ss_pred Hhhh--cCEEEE
Q psy2378 222 HLNY--IDGVML 231 (956)
Q Consensus 222 ~l~~--ad~Vmi 231 (956)
+++. +|.+.+
T Consensus 241 ~~~~~~~dvi~~ 252 (324)
T TIGR01928 241 LIELGNVKVINI 252 (324)
T ss_pred HHHcCCCCEEEe
Confidence 9986 888864
No 477
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=94.59 E-value=0.34 Score=56.05 Aligned_cols=120 Identities=10% Similarity=0.141 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHH
Q psy2378 74 EPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 152 (956)
Q Consensus 74 ~~~~~~~aA~~~~~-~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~ 152 (956)
+++++++.|+.+.+ .||..+-|..|- .+++.-.+.|+++|++++ .+++++.....-+.+++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~---~~~l~vDaN~~w~~~~A 229 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFP---GARLRLDPNGAWSLETA 229 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCC---CCcEEEeCCCCcCHHHH
Confidence 78888888877654 699999986431 235666788999999873 23343322222233568
Q ss_pred HHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEE
Q psy2378 153 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVM 230 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~Vm 230 (956)
.++++.|++ ++.++ ++.. + +++..+++++.. ++||.+.=.+.+++++.++++. +|.+.
T Consensus 230 ~~~~~~l~~-~l~~i---------------EeP~--~-d~~~~~~L~~~~-~~PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 230 IRLAKELEG-VLAYL---------------EDPC--G-GREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred HHHHHhcCc-CCCEE---------------ECCC--C-CHHHHHHHHHhc-CCCEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 899999988 87766 2221 2 788889999987 7999887788899999999886 88875
Q ss_pred E
Q psy2378 231 L 231 (956)
Q Consensus 231 i 231 (956)
+
T Consensus 290 ~ 290 (395)
T cd03323 290 A 290 (395)
T ss_pred e
Confidence 4
No 478
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.59 E-value=0.45 Score=51.73 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=90.1
Q ss_pred ceeEEEecCCCCC----CCCHHHHHHHHHHHHHHcccCCCceeEEEeCCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHH
Q psy2378 667 KIHTIFIGGGTPS----LISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 742 (956)
Q Consensus 667 ~i~~i~fgggtPs----~L~~~~l~~ll~~i~~~~~~~~~~eitle~np~~it~e~L~~L~~~Gv~risiGvQS~~d~~L 742 (956)
.++.+-+|++.+. +.. ...++++.+.+.. +...+..-++.. .+.++.+.++|+.++.+.+-+.+-...
T Consensus 32 GV~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~---~~~~~~~l~~~~---~~~i~~a~~~g~~~i~i~~~~s~~~~~ 103 (265)
T cd03174 32 GVDSIEVGSGASPKAVPQME--DDWEVLRAIRKLV---PNVKLQALVRNR---EKGIERALEAGVDEVRIFDSASETHSR 103 (265)
T ss_pred CCCEEEeccCcCccccccCC--CHHHHHHHHHhcc---CCcEEEEEccCc---hhhHHHHHhCCcCEEEEEEecCHHHHH
Confidence 4778888887765 221 2344555555542 133554433332 678999999999999888855443444
Q ss_pred HHhCCCC--CHHHHHHHHHHHHhcCCeeEEEEeecC-CCCCHHHHHHHHHHHHccCCCeEEEE
Q psy2378 743 NILGRTH--DSKQAKYAIEIAKQYFNNFNLDLIYAL-PNQTLSELMLDLNYAIQYSPPHLSLY 802 (956)
Q Consensus 743 ~~~~R~~--~~~~~~~ai~~l~~~~~~i~~dlI~Gl-PgqT~e~~~~tl~~~~~l~~~~i~~y 802 (956)
..++|.. ..+.+.++++.+++.|..+.+.++.-. |..+.+.+.+.++.+.+++++.|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 104 KNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4455553 677888999999999998998886555 35889999999999999999988643
No 479
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=94.56 E-value=0.71 Score=52.90 Aligned_cols=135 Identities=12% Similarity=0.141 Sum_probs=92.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcC-CCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G-~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
.-|+-..+...+++++.+.|+...+.| |..+-+-.|- .+++.-.+.++++|+.++-.+ ++++
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~--~l~i 193 (365)
T cd03318 131 SLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRA--SVRV 193 (365)
T ss_pred ceEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCc--EEEE
Confidence 344544555566676666666666778 9999886431 235555677899988875333 3433
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHH
Q psy2378 142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 221 (956)
Q Consensus 142 g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~ 221 (956)
.....-+.+++.++++.|++.|+.+|- +. .++.+|+..+++++.. ++||.+.=.+.+++++.+
T Consensus 194 DaN~~~~~~~A~~~~~~l~~~~~~~iE---------------eP-~~~~~~~~~~~l~~~~-~~pia~dE~~~~~~~~~~ 256 (365)
T cd03318 194 DVNQAWDESTAIRALPRLEAAGVELIE---------------QP-VPRENLDGLARLRSRN-RVPIMADESVSGPADAFE 256 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCcceee---------------CC-CCcccHHHHHHHHhhc-CCCEEcCcccCCHHHHHH
Confidence 222222345688999999999877662 11 1234788889999887 799888777889999999
Q ss_pred Hhhh--cCEEEE
Q psy2378 222 HLNY--IDGVML 231 (956)
Q Consensus 222 ~l~~--ad~Vmi 231 (956)
+++. +|++.+
T Consensus 257 ~i~~~~~d~~~~ 268 (365)
T cd03318 257 LARRGAADVFSL 268 (365)
T ss_pred HHHhCCCCeEEE
Confidence 9986 888865
No 480
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.54 E-value=0.13 Score=54.28 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEE
Q psy2378 151 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 229 (956)
Q Consensus 151 ~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~V 229 (956)
+..++|+..+++|+++|++..-..... -..+.+..+++.+ ++||+.-|.|.+++.++.+++. ||+|
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~------------g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQ------------GSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccC------------CCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEE
Confidence 468999999999999999875432111 2557778888876 8999998889999899999888 9999
Q ss_pred EEcccccc
Q psy2378 230 MLGREAYK 237 (956)
Q Consensus 230 miGR~~l~ 237 (956)
.++-..+.
T Consensus 99 ~l~~~~~~ 106 (217)
T cd00331 99 LLIVAALD 106 (217)
T ss_pred EEeeccCC
Confidence 98776654
No 481
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.53 E-value=0.81 Score=47.47 Aligned_cols=137 Identities=9% Similarity=0.029 Sum_probs=90.9
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCC
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 213 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI 213 (956)
|+..=+|.- +.+++.++++.|.+.|+..|.|+-++ |...+.|+++++.+|+ -+||.|.|
T Consensus 5 ~vv~Vir~~-----~~~~a~~ia~al~~gGi~~iEit~~t---------------p~a~~~I~~l~~~~~~-~~vGAGTV 63 (201)
T PRK06015 5 PVIPVLLID-----DVEHAVPLARALAAGGLPAIEITLRT---------------PAALDAIRAVAAEVEE-AIVGAGTI 63 (201)
T ss_pred CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCC---------------ccHHHHHHHHHHHCCC-CEEeeEeC
Confidence 444446642 23568899999999999999999887 2456889999988864 57999999
Q ss_pred CCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCC-CHHHHH
Q psy2378 214 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFV-TPNAIN 291 (956)
Q Consensus 214 ~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~-t~~~v~ 291 (956)
.|.++++++++. +++++.= -.||.+.+..++ ++-...+...|+.|+...+..-.+ .--++++... .+..++
T Consensus 64 l~~e~a~~ai~aGA~FivSP---~~~~~vi~~a~~--~~i~~iPG~~TptEi~~A~~~Ga~--~vK~FPa~~~GG~~yik 136 (201)
T PRK06015 64 LNAKQFEDAAKAGSRFIVSP---GTTQELLAAAND--SDVPLLPGAATPSEVMALREEGYT--VLKFFPAEQAGGAAFLK 136 (201)
T ss_pred cCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCC--EEEECCchhhCCHHHHH
Confidence 999999999998 9988751 245555554443 122221345788888776544332 1124455555 355555
Q ss_pred HHHHhhc
Q psy2378 292 FMSKYAR 298 (956)
Q Consensus 292 fm~~y~~ 298 (956)
-+..-+.
T Consensus 137 al~~plp 143 (201)
T PRK06015 137 ALSSPLA 143 (201)
T ss_pred HHHhhCC
Confidence 4444333
No 482
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.43 E-value=0.51 Score=51.65 Aligned_cols=149 Identities=12% Similarity=0.203 Sum_probs=88.7
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 63 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 63 ~~p~~vQl~-g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
.-|++++|= |.+.+.. +++.++||+-|.+- +.--.+..|.+...++++..+. .+++|-.-+..
T Consensus 72 ~VPValHLDHg~~~e~i----~~ai~~GFtSVM~D-----------gS~lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~ 135 (282)
T TIGR01858 72 NMPLALHLDHHESLDDI----RQKVHAGVRSAMID-----------GSHFPFAQNVKLVKEVVDFCHR-QDCSVEAELGR 135 (282)
T ss_pred CCCEEEECCCCCCHHHH----HHHHHcCCCEEeec-----------CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEEe
Confidence 346666663 3344332 33344566666664 3233356677888888887775 37666655522
Q ss_pred --CCCCC-------CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecC
Q psy2378 142 --GIDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG 212 (956)
Q Consensus 142 --g~~~~-------~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGg 212 (956)
|.++. ..+-+..+..+-+++.|+|+|.|.-+|. ...|.+ .|..+|+.+++|++.+ ++|++.-|+
T Consensus 136 vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~yk~-----~p~Ldf~~L~~I~~~~-~iPLVlHGg 208 (282)
T TIGR01858 136 LGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTA-HGLYKK-----TPKLDFDRLAEIREVV-DVPLVLHGA 208 (282)
T ss_pred cCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCcc-ccCcCC-----CCccCHHHHHHHHHHh-CCCeEEecC
Confidence 21111 0011223444447789999999987773 111211 3458999999999998 899998887
Q ss_pred CCCHH-HHHHHhhh-cCEEEEccc
Q psy2378 213 IKTKK-EIDLHLNY-IDGVMLGRE 234 (956)
Q Consensus 213 I~s~~-da~~~l~~-ad~VmiGR~ 234 (956)
-..++ +..++++. +.=|=+++.
T Consensus 209 SG~~~e~~~~ai~~Gi~KiNi~T~ 232 (282)
T TIGR01858 209 SDVPDEDVRRTIELGICKVNVATE 232 (282)
T ss_pred CCCCHHHHHHHHHcCCeEEEeCcH
Confidence 76664 45566654 554555543
No 483
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.41 E-value=0.78 Score=50.89 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=76.8
Q ss_pred HHHHHcC-CCEEEecCC-------CCcceeeeCcccccccCC-------hHHHHHHHHHHhhccCccEEEEeccCCCCCC
Q psy2378 83 KIIQKWG-YDEINLNCG-------CPSNRVQNGFFGAILMTK-------PLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 147 (956)
Q Consensus 83 ~~~~~~G-~d~IeiN~g-------CP~~~~~~~~~G~~l~~~-------~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~ 147 (956)
+.+.+.| |.+|.+-.- -|.+...+.. .++.|. ++...+-++..++..+.|+.+=+...
T Consensus 27 ~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~--~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~----- 99 (296)
T cd04740 27 SRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGS----- 99 (296)
T ss_pred HHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC--cceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecC-----
Confidence 3344456 999998543 2332322222 233332 13333333334444578888877642
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEE--ecCCCCHHHHHHHhh-
Q psy2378 148 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII--NGGIKTKKEIDLHLN- 224 (956)
Q Consensus 148 ~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~--nGgI~s~~da~~~l~- 224 (956)
..++..+.|+.++++|+|+|.+|..+....+. +..-...+..-.+.++.+++.+ ++||+. +.++.+..+..+.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~ 177 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHH
Confidence 23567899999999999999998654311110 0000011112236778888877 789873 444444444444343
Q ss_pred h-cCEEEE
Q psy2378 225 Y-IDGVML 231 (956)
Q Consensus 225 ~-ad~Vmi 231 (956)
. +|+|.+
T Consensus 178 ~G~d~i~~ 185 (296)
T cd04740 178 AGADGLTL 185 (296)
T ss_pred cCCCEEEE
Confidence 4 998855
No 484
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.39 E-value=1 Score=47.66 Aligned_cols=132 Identities=19% Similarity=0.085 Sum_probs=85.5
Q ss_pred EEEEecCC----CHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc
Q psy2378 66 IAFQVGDN----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141 (956)
Q Consensus 66 ~~vQl~g~----~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 141 (956)
+.+|..-. ++++..+.|+.+.++|+.+++++ . .+.++++++.+++|+...++-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~ 65 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKR 65 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEec
Confidence 55676643 45778888888899999999973 0 367788888889998644442
Q ss_pred CCCC-CCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHH
Q psy2378 142 GIDD-INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 220 (956)
Q Consensus 142 g~~~-~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~ 220 (956)
.+.+ .-......+.++.+.++|+|+|.+..+... ++ .+....+.+..+++. +++|++. ++.+.+++.
T Consensus 66 d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~----~p-----~~~~~~~~i~~~~~~-~~i~vi~--~v~t~ee~~ 133 (221)
T PRK01130 66 DYPDSEVYITPTLKEVDALAAAGADIIALDATLRP----RP-----DGETLAELVKRIKEY-PGQLLMA--DCSTLEEGL 133 (221)
T ss_pred CCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC----CC-----CCCCHHHHHHHHHhC-CCCeEEE--eCCCHHHHH
Confidence 1000 000000134578899999999888654310 00 001234566777764 4788885 577999998
Q ss_pred HHhhh-cCEEEEc
Q psy2378 221 LHLNY-IDGVMLG 232 (956)
Q Consensus 221 ~~l~~-ad~VmiG 232 (956)
++.+. +|.+.++
T Consensus 134 ~a~~~G~d~i~~~ 146 (221)
T PRK01130 134 AAQKLGFDFIGTT 146 (221)
T ss_pred HHHHcCCCEEEcC
Confidence 87777 9998774
No 485
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.36 E-value=0.44 Score=51.65 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCcc-EEEEeccCCCCCCcHHHH-HHHHHH
Q psy2378 81 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFV-RDFVGT 158 (956)
Q Consensus 81 aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g~~~~~~~~~~-~~~a~~ 158 (956)
.|+.++++|||.|=. |....++. -||-....-..+.+...+++|++.++.| |++-+..|.-. .+.++. ....+.
T Consensus 27 sArl~e~aG~d~i~v--Gds~~~~~-lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~-~~~~~av~~a~r~ 102 (264)
T PRK00311 27 FAKLFDEAGVDVILV--GDSLGMVV-LGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQ-ASPEQALRNAGRL 102 (264)
T ss_pred HHHHHHHcCCCEEEE--CHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCcc-CCHHHHHHHHHHH
Confidence 567888999999953 43222221 2233333446777888888988888886 77666433221 122333 334556
Q ss_pred HHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEE
Q psy2378 159 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 208 (956)
Q Consensus 159 l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi 208 (956)
++++|+++|.+-+.. ...+.|+.+.+. +|||+
T Consensus 103 ~~~aGa~aVkiEdg~----------------~~~~~I~al~~a--gIpV~ 134 (264)
T PRK00311 103 MKEAGAHAVKLEGGE----------------EVAETIKRLVER--GIPVM 134 (264)
T ss_pred HHHhCCeEEEEcCcH----------------HHHHHHHHHHHC--CCCEe
Confidence 666999999997642 123456666654 68987
No 486
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.28 E-value=3 Score=43.84 Aligned_cols=178 Identities=8% Similarity=0.085 Sum_probs=101.8
Q ss_pred CcCcCCHHHHHHHHHcCCCcEE---EecccccccccC-Cchhcccc-CCCCCCEEEEecCCCHHHHHHHHHHHHHcCCCE
Q psy2378 18 MMNLTDRHCRMFHRQITRYSWL---YTEMFTTQAILG-NKKHCLDF-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDE 92 (956)
Q Consensus 18 M~~~td~~fR~~~~~~g~~~l~---~tem~~~~~l~~-~~~~~~~~-~~~~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~ 92 (956)
.+|+|+..--..+.+.|. |++ +.+ -|.+.+-. ....+... .+.-.+++| ....+++++.+.+ ++++.|.
T Consensus 7 ICGi~~~eda~~~~~~Ga-d~iGfI~~~-~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~~---~~~~~d~ 80 (210)
T PRK01222 7 ICGITTPEDAEAAAELGA-DAIGFVFYP-KSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEIV---ETVPLDL 80 (210)
T ss_pred ECCCCcHHHHHHHHHcCC-CEEEEccCC-CCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHHH---HhcCCCE
Confidence 378999888788888884 433 222 12222211 11222222 222233332 3356777776665 5789999
Q ss_pred EEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccc
Q psy2378 93 INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172 (956)
Q Consensus 93 IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r 172 (956)
|.||...+ +.+ ++.+++..+++++-.++.... . ++... ... ...+|++-+...
T Consensus 81 vQLHg~e~----------------~~~----~~~l~~~~~~~iik~i~v~~~--~---~l~~~-~~~-~~~~d~~L~Ds~ 133 (210)
T PRK01222 81 LQLHGDET----------------PEF----CRQLKRRYGLPVIKALRVRSA--G---DLEAA-AAY-YGDADGLLLDAY 133 (210)
T ss_pred EEECCCCC----------------HHH----HHHHHhhcCCcEEEEEecCCH--H---HHHHH-Hhh-hccCCEEEEcCC
Confidence 99985332 333 456666667777655665321 1 11111 111 235899988865
Q ss_pred ccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh--cCEEEEccccccCCc
Q psy2378 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF 240 (956)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~--ad~VmiGR~~l~~P~ 240 (956)
.. ..|-+|. ..||+.+. +.. +.|++..||| +++.+.+++.. ..||=+..|.-..|-
T Consensus 134 ~~-~~GGtG~------~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 134 VG-LPGGTGK------TFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred CC-CCCCCCC------ccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 43 1122222 36898772 223 4699999999 69999998875 788888777655443
No 487
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.27 E-value=0.35 Score=50.02 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=85.5
Q ss_pred cEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCC
Q psy2378 134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 213 (956)
Q Consensus 134 pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI 213 (956)
++..=+|... .+++.++++.|.+.|+..+.|+-|+ |..++.++++++.+|+ -++|.|.|
T Consensus 9 ~iiaVir~~~-----~~~a~~~~~al~~gGi~~iEiT~~t---------------~~a~~~I~~l~~~~p~-~~vGAGTV 67 (196)
T PF01081_consen 9 KIIAVIRGDD-----PEDAVPIAEALIEGGIRAIEITLRT---------------PNALEAIEALRKEFPD-LLVGAGTV 67 (196)
T ss_dssp SEEEEETTSS-----GGGHHHHHHHHHHTT--EEEEETTS---------------TTHHHHHHHHHHHHTT-SEEEEES-
T ss_pred CEEEEEEcCC-----HHHHHHHHHHHHHCCCCEEEEecCC---------------ccHHHHHHHHHHHCCC-CeeEEEec
Confidence 4444466532 2357899999999999999999887 2456889999988876 57899999
Q ss_pred CCHHHHHHHhhh-cCEEEEccccccCCcchHHHHHhhccCCCCCCCCCHHHHHHHHHhhhhcccccccccCCCC-HHHHH
Q psy2378 214 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVT-PNAIN 291 (956)
Q Consensus 214 ~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~e~egdlv~~a~~~t-~~~v~ 291 (956)
.|.++++++++. |++++.= --||.+.+..++. +-...+...|+.|+...+..-.+ .--++++.... +..++
T Consensus 68 ~~~e~a~~a~~aGA~FivSP---~~~~~v~~~~~~~--~i~~iPG~~TptEi~~A~~~G~~--~vK~FPA~~~GG~~~ik 140 (196)
T PF01081_consen 68 LTAEQAEAAIAAGAQFIVSP---GFDPEVIEYAREY--GIPYIPGVMTPTEIMQALEAGAD--IVKLFPAGALGGPSYIK 140 (196)
T ss_dssp -SHHHHHHHHHHT-SEEEES---S--HHHHHHHHHH--TSEEEEEESSHHHHHHHHHTT-S--EEEETTTTTTTHHHHHH
T ss_pred cCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCcccCCcCCHHHHHHHHHCCCC--EEEEecchhcCcHHHHH
Confidence 999999999998 9998862 2455555544431 21111125688888776543332 12245666665 56555
Q ss_pred HHHHhhc
Q psy2378 292 FMSKYAR 298 (956)
Q Consensus 292 fm~~y~~ 298 (956)
-+...+.
T Consensus 141 ~l~~p~p 147 (196)
T PF01081_consen 141 ALRGPFP 147 (196)
T ss_dssp HHHTTTT
T ss_pred HHhccCC
Confidence 5544333
No 488
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.22 E-value=1.8 Score=48.66 Aligned_cols=157 Identities=12% Similarity=0.140 Sum_probs=87.2
Q ss_pred CCEEEE--ecCCCHHHHHHHHHHHHHcCCCEEEecC---------CCCcceeeeC----cccccccC-----Ch--HHHH
Q psy2378 64 HPIAFQ--VGDNEPKKLAKSAKIIQKWGYDEINLNC---------GCPSNRVQNG----FFGAILMT-----KP--LLVS 121 (956)
Q Consensus 64 ~p~~vQ--l~g~~~~~~~~aA~~~~~~G~d~IeiN~---------gCP~~~~~~~----~~G~~l~~-----~~--~~~~ 121 (956)
.|+++- -++.+.+.+. .+..+|+-+|.+-- |-|.+..... .-..+++| ++ +...
T Consensus 13 nPv~~ASg~~~~~~e~~~----~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~~~ 88 (325)
T cd04739 13 NPLVASASPLSRNLDNIR----RLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEEYL 88 (325)
T ss_pred CCCEeCCcCCCCCHHHHH----HHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHHHH
Confidence 455542 2334444443 36678999998843 3333332211 00222333 33 4444
Q ss_pred HHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEccccccc-ccCCCCCCCCCCcCcHHHHHHHHH
Q psy2378 122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL-KKLNPKQNRKIPILKYNFVYNLKK 200 (956)
Q Consensus 122 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~-~g~~~~~~~~~~~~~~~~i~~v~~ 200 (956)
+-++..++..+.||.+-+- |. +.++..++++.++++|+|+|.++...... .+..+. ..+..-++.++.+++
T Consensus 89 ~~i~~~~~~~~~pvi~si~-g~----~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~---~~~~~~~eiv~~v~~ 160 (325)
T cd04739 89 ELIRRAKRAVSIPVIASLN-GV----SAGGWVDYARQIEEAGADALELNIYALPTDPDISGA---EVEQRYLDILRAVKS 160 (325)
T ss_pred HHHHHHHhccCCeEEEEeC-CC----CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccc---hHHHHHHHHHHHHHh
Confidence 4444555555789888773 21 23467899999999999999998643100 010000 000112467888888
Q ss_pred hCCCceEEE--ecCCCCHHHHHHHhhh--cCEEEE-cc
Q psy2378 201 DFPELEIII--NGGIKTKKEIDLHLNY--IDGVML-GR 233 (956)
Q Consensus 201 ~~~~ipVi~--nGgI~s~~da~~~l~~--ad~Vmi-GR 233 (956)
.+ ++||+. +.++.+..+..+.+.. +|+|.+ +|
T Consensus 161 ~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 161 AV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred cc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 77 799984 4555566666555554 999854 55
No 489
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.08 E-value=0.88 Score=49.89 Aligned_cols=115 Identities=9% Similarity=0.117 Sum_probs=73.1
Q ss_pred ccccCChHHHHHHHHHHhhccCccEEEEecc-C-CCCC----C-cHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCC
Q psy2378 111 AILMTKPLLVSDCIKAMRDSVEIDITVKHRI-G-IDDI----N-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183 (956)
Q Consensus 111 ~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g-~~~~----~-~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~ 183 (956)
-.+..|.+...++++..+. .+++|-.-+.. | .++. . .+-+..+..+-+++.|+|+|.|.-+|. .|...
T Consensus 111 lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~--HG~Y~-- 185 (285)
T PRK07709 111 HPFEENVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSV--HGPYK-- 185 (285)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccc--ccCcC--
Confidence 3445677888888887774 37777666532 2 2111 0 011233444446778999999987763 22110
Q ss_pred CCCCCcCcHHHHHHHHHhCCCceEEEecCCCCH-HHHHHHhhh-cCEEEEcc
Q psy2378 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGR 233 (956)
Q Consensus 184 ~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~-~da~~~l~~-ad~VmiGR 233 (956)
..|..+|+.+++|++.+ ++|++.-|+-..+ ++..++++. +.=|=+++
T Consensus 186 --~~p~L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 186 --GEPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred --CCCccCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 12458999999999998 8999988887766 556677765 44444444
No 490
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.07 E-value=0.32 Score=54.30 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=66.4
Q ss_pred cccC-ChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcCC--CEEEEcccccccccCCCCCCCCCC
Q psy2378 112 ILMT-KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGC--RTFIVHARNAFLKKLNPKQNRKIP 188 (956)
Q Consensus 112 ~l~~-~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~--~~i~vh~r~~~~~g~~~~~~~~~~ 188 (956)
.+.+ +++...+.++.++ +..+.|-+..|...+ ..+-+..|.++|+ |.|.+....+ .+
T Consensus 65 ~~~k~~~e~~~~~~r~~~---~~~l~v~~~vg~~~~-----~~~~~~~Lv~ag~~~d~i~iD~a~g----h~-------- 124 (326)
T PRK05458 65 IMHRFDPEARIPFIKDMH---EQGLIASISVGVKDD-----EYDFVDQLAAEGLTPEYITIDIAHG----HS-------- 124 (326)
T ss_pred EEecCCHHHHHHHHHhcc---ccccEEEEEecCCHH-----HHHHHHHHHhcCCCCCEEEEECCCC----ch--------
Confidence 3445 6666555554443 223455555554331 2356778888855 9999954321 00
Q ss_pred cCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 189 ~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
..-.+.++++++.+|++||| .|+|.|++++..+.+. ||++.+|
T Consensus 125 ~~~~e~I~~ir~~~p~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 125 DSVINMIQHIKKHLPETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhhCCCCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 12457799999998777766 6778899999999988 9999877
No 491
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.01 E-value=0.3 Score=54.01 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHHcC--CCEEEEcccccccccCCCCCCCCCCcCcHHH
Q psy2378 117 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIPILKYNF 194 (956)
Q Consensus 117 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G--~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~ 194 (956)
++.-.+.++.+......-+.| ..|..+. -.+.++.|.++| +|+|+|..-. |++ ..-.+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~~-----d~er~~~L~~a~~~~d~iviD~Ah----Ghs--------~~~i~~ 140 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSDN-----DLEKMTSILEAVPQLKFICLDVAN----GYS--------EHFVEF 140 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCHH-----HHHHHHHHHhcCCCCCEEEEECCC----CcH--------HHHHHH
Confidence 444444555544433333444 4444332 245677777774 9999997543 221 124578
Q ss_pred HHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEc
Q psy2378 195 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 232 (956)
Q Consensus 195 i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiG 232 (956)
++.+++..|+ +.+..|.|.|+++++++++. ||+|-+|
T Consensus 141 ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 141 VKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 9999998875 55568999999999999998 9999766
No 492
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=93.97 E-value=0.063 Score=56.54 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccccCCcchHHHH
Q psy2378 193 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 246 (956)
Q Consensus 193 ~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l~~P~l~~~i~ 246 (956)
+.+.++++...++|+|..|||+|.++|+++.+. ||.|.+|..+..||+ .+++.
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~-~e~~~ 224 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPD-LEEAL 224 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH--HHHHH
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcch-HHHHH
Confidence 445555555668999999999999999999998 999999999999998 44433
No 493
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.95 E-value=0.74 Score=50.25 Aligned_cols=152 Identities=9% Similarity=0.172 Sum_probs=94.9
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEec
Q psy2378 62 EEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 140 (956)
Q Consensus 62 ~~~p~~vQl~-g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 140 (956)
...|++++|= |.+++...+| .++||+-|.+-. ..-.+..+.+...++++-.+.. +++|-.-+.
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~a----i~~GftSVMiD~-----------S~l~~eeNi~~t~~vv~~ah~~-gv~VEaElG 131 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRA----IRAGFSSVMIDG-----------SHLPFEENVAKTKEVVELAHAY-GVSVEAELG 131 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHH----HHhCCCEEEeCC-----------CCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEe
Confidence 3568888884 4566555444 356888887743 2233566778888888887764 666655542
Q ss_pred c--CCCCC-----CcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCC
Q psy2378 141 I--GIDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 213 (956)
Q Consensus 141 ~--g~~~~-----~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI 213 (956)
. |.++. ..+-+..+..+-+++.|+|+|.+.-+|. ...|.+ ..+..+|+.++++.+.+ ++|++.-|+-
T Consensus 132 ~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~-HG~Y~~----~~p~L~~~~L~~i~~~~-~vPLVlHGgS 205 (276)
T cd00947 132 RIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS-HGAYKG----GEPKLDFDRLKEIAERV-NVPLVLHGGS 205 (276)
T ss_pred eecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc-ccccCC----CCCccCHHHHHHHHHHh-CCCEEEeCCC
Confidence 2 22211 0011233444556678999999987763 111111 13458999999999998 7999988887
Q ss_pred CCHH-HHHHHhhh-cCEEEEcccc
Q psy2378 214 KTKK-EIDLHLNY-IDGVMLGREA 235 (956)
Q Consensus 214 ~s~~-da~~~l~~-ad~VmiGR~~ 235 (956)
..++ +..++++. +.=|=+++.+
T Consensus 206 G~~~e~~~~ai~~Gi~KiNi~T~l 229 (276)
T cd00947 206 GIPDEQIRKAIKLGVCKININTDL 229 (276)
T ss_pred CCCHHHHHHHHHcCCeEEEeChHH
Confidence 7764 47777765 5555555543
No 494
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.92 E-value=1.1 Score=46.53 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccC
Q psy2378 63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 142 (956)
Q Consensus 63 ~~p~~vQl~g~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 142 (956)
..|++.=|.+.++++....|+.+.+.|++.|||-+-+| ...+.++++++..+ .+-|..|
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp------------------~a~e~I~~l~~~~p---~~lIGAG 70 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTP------------------AALEAIRALAKEFP---EALIGAG 70 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCC------------------CHHHHHHHHHHhCc---ccEEccc
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEccccc--------------------------ccccCCCCCCCCCCcC-cHHHH
Q psy2378 143 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------FLKKLNPKQNRKIPIL-KYNFV 195 (956)
Q Consensus 143 ~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~--------------------------~~~g~~~~~~~~~~~~-~~~~i 195 (956)
.--.. +-++.+.++|++++.--+-+. +..|++.-.-...... .-.++
T Consensus 71 TVL~~------~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ 144 (211)
T COG0800 71 TVLNP------EQARQAIAAGAQFIVSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPAML 144 (211)
T ss_pred cccCH------HHHHHHHHcCCCEEECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcHHHH
Q ss_pred HHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEEEccccc
Q psy2378 196 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 236 (956)
Q Consensus 196 ~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~VmiGR~~l 236 (956)
+.++--+++++++-.||| |.+.+.+.+.. +..|.+|..+.
T Consensus 145 ka~~gP~~~v~~~pTGGV-s~~N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 145 KALAGPFPQVRFCPTGGV-SLDNAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred HHHcCCCCCCeEeecCCC-CHHHHHHHHhCCceEEecCcccc
No 495
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.91 E-value=1.3 Score=49.28 Aligned_cols=118 Identities=12% Similarity=0.209 Sum_probs=69.5
Q ss_pred eeeCcccccccCChHHHHHHHHHHhhccCccEEEEecc-C-CCCC----C-cHHHHHHHHHHHHHcCCCEEEEccccccc
Q psy2378 104 VQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-G-IDDI----N-SYDFVRDFVGTVSSAGCRTFIVHARNAFL 176 (956)
Q Consensus 104 ~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g-~~~~----~-~~~~~~~~a~~l~~~G~~~i~vh~r~~~~ 176 (956)
+--|+.--.+..|-+...++++..+. .+++|-.-+.. | .+++ . .+-+..+..+-+++.|+|+|.+.-++. .
T Consensus 112 VMiD~S~lp~eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~-H 189 (321)
T PRK07084 112 VMIDGSHLPYEENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTS-H 189 (321)
T ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccc-c
Confidence 33343333455677777888777764 46666555432 1 1111 0 011233444556678999999987763 1
Q ss_pred ccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHHHHHHHh
Q psy2378 177 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL 223 (956)
Q Consensus 177 ~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~da~~~l 223 (956)
..|.+.+....+..+|+.+++|++.++++|++.-|+-..+++..+.+
T Consensus 190 G~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~ 236 (321)
T PRK07084 190 GAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTI 236 (321)
T ss_pred ccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHH
Confidence 11211110003458999999999998569999999886665544443
No 496
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=93.82 E-value=0.34 Score=51.70 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred ccccCCCCCCEEEEecCCCHH-HHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCC---hHHHHHHHHHHhhcc
Q psy2378 56 CLDFNAEEHPIAFQVGDNEPK-KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK---PLLVSDCIKAMRDSV 131 (956)
Q Consensus 56 ~~~~~~~~~p~~vQl~g~~~~-~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~---~~~~~eiv~~v~~~~ 131 (956)
++..-+ +.|++.=+++.||- ++..--+.+++.||.+|. |+ |---...+.+...|+.. .++=.|+++..++.
T Consensus 75 iLp~v~-~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~- 149 (268)
T PF09370_consen 75 ILPVVK-DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK- 149 (268)
T ss_dssp HGGG-S-SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-
T ss_pred hhhhcc-CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-
Confidence 444333 58999999999994 566666788899999995 65 53222233333333321 22333445554443
Q ss_pred CccEEEEeccCCCCCCcHHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHH---hC-CCc-e
Q psy2378 132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DF-PEL-E 206 (956)
Q Consensus 132 ~~pv~vKir~g~~~~~~~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~---~~-~~i-p 206 (956)
++. |+-.- ++ .+=|+++.++|+|.|.+|.+.. ..|..|......-....+.+.++.+ .+ |++ -
T Consensus 150 gl~-T~~yv--f~--------~e~A~~M~~AGaDiiv~H~GlT-~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~ 217 (268)
T PF09370_consen 150 GLF-TTAYV--FN--------EEQARAMAEAGADIIVAHMGLT-TGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIV 217 (268)
T ss_dssp T-E-E--EE---S--------HHHHHHHHHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-TT-EE
T ss_pred CCe-eeeee--cC--------HHHHHHHHHcCCCEEEecCCcc-CCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 221 11111 11 2346778899999999995531 2333332211100001123333333 22 444 4
Q ss_pred EEEecCCCCHHHHHHHhhh---cCEEEEcc
Q psy2378 207 IIINGGIKTKKEIDLHLNY---IDGVMLGR 233 (956)
Q Consensus 207 Vi~nGgI~s~~da~~~l~~---ad~VmiGR 233 (956)
+.--|-|.+|+|+..+++. |+|..-|.
T Consensus 218 l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~S 247 (268)
T PF09370_consen 218 LCHGGPIATPEDAQYVLRNTKGIHGFIGAS 247 (268)
T ss_dssp EEECTTB-SHHHHHHHHHH-TTEEEEEEST
T ss_pred EEeCCCCCCHHHHHHHHhcCCCCCEEeccc
Confidence 4566779999999999987 56655544
No 497
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.81 E-value=1.5 Score=46.43 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=87.1
Q ss_pred CCCEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecCCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEE
Q psy2378 63 EHPIAFQVGD----NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 138 (956)
Q Consensus 63 ~~p~~vQl~g----~~~~~~~~aA~~~~~~G~d~IeiN~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 138 (956)
+--+.+|... .++....++|+.+.++|+.++++ ++ + +.++.+++.+++|+..-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~-----------------~----~~~~~i~~~~~iPil~~ 66 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NG-----------------V----EDIRAIRARVDLPIIGL 66 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CC-----------------H----HHHHHHHHhCCCCEEEE
Confidence 3345566653 35678899999999999999885 11 2 45566676678999654
Q ss_pred eccCCCCCCc-HHHHHHHHHHHHHcCCCEEEEcccccccccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEEecCCCCHH
Q psy2378 139 HRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 217 (956)
Q Consensus 139 ir~g~~~~~~-~~~~~~~a~~l~~~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~nGgI~s~~ 217 (956)
.+.++++... +....+.++.+.++|+++|.+...... ........++++.+++.. ++|++. ++.|++
T Consensus 67 ~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~---------~p~~~~~~~~i~~~~~~g-~~~iiv--~v~t~~ 134 (219)
T cd04729 67 IKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP---------RPDGETLAELIKRIHEEY-NCLLMA--DISTLE 134 (219)
T ss_pred EecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC---------CCCCcCHHHHHHHHHHHh-CCeEEE--ECCCHH
Confidence 4545432110 001134678899999999888643210 000013456777888775 578776 678999
Q ss_pred HHHHHhhh-cCEEEE
Q psy2378 218 EIDLHLNY-IDGVML 231 (956)
Q Consensus 218 da~~~l~~-ad~Vmi 231 (956)
++....+. +|.+.+
T Consensus 135 ea~~a~~~G~d~i~~ 149 (219)
T cd04729 135 EALNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHHHcCCCEEEc
Confidence 99888777 998865
No 498
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.80 E-value=0.31 Score=53.87 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHHHHHHHHHHH--cCCCEEEEcccccccccCCCCCCCCCCcCcHHH
Q psy2378 117 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS--AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 194 (956)
Q Consensus 117 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~~~~a~~l~~--~G~~~i~vh~r~~~~~g~~~~~~~~~~~~~~~~ 194 (956)
++.-.+.++.++.....-+.| ..|..+. + .+.++.|.+ +|+|+|+|..-. |++ ..-.+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~----d-~er~~~L~~~~~g~D~iviD~Ah----Ghs--------~~~i~~ 141 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDA----D-FEKTKQILALSPALNFICIDVAN----GYS--------EHFVQF 141 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHH----H-HHHHHHHHhcCCCCCEEEEECCC----CcH--------HHHHHH
Confidence 455555666666544333444 4444332 2 345556666 699999997543 221 124678
Q ss_pred HHHHHHhCCCceEEEecCCCCHHHHHHHhhh-cCEEE--EccccccC
Q psy2378 195 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM--LGREAYKN 238 (956)
Q Consensus 195 i~~v~~~~~~ipVi~nGgI~s~~da~~~l~~-ad~Vm--iGR~~l~~ 238 (956)
++.+|+.+|+++|| .|.|.|++.+++++.. ||+|= ||-|-+.-
T Consensus 142 ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 142 VAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 99999999888866 7999999999999988 99985 44444443
No 499
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.77 E-value=1.5 Score=48.81 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCCEEEec-------CCCCcceeeeCcccccccCC-----h---HHHHHHHHHHhhccCccEEEEeccCCC
Q psy2378 80 KSAKIIQKWGYDEINLN-------CGCPSNRVQNGFFGAILMTK-----P---LLVSDCIKAMRDSVEIDITVKHRIGID 144 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN-------~gCP~~~~~~~~~G~~l~~~-----~---~~~~eiv~~v~~~~~~pv~vKir~g~~ 144 (956)
+.++.+.+.||.+|.+- .|-|.++..+.. .++.|. + ..+.++.+. ++..+.|+.+=+.-.
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~~g~~~~g~~~~~~~~~~~-~~~~~~p~i~si~g~-- 101 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAIGLQNPGVDAFIEEELPW-LEEFDTPIIANVAGS-- 101 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC--CceeecCCCCCcCHHHHHHHHHHH-HhccCCcEEEEeccC--
Confidence 34445567899999983 344544443332 334432 2 333444433 334478888877532
Q ss_pred CCCcHHHHHHHHHHHHHcC-CCEEEEccccccc-ccCCCCCCCCCCcCcHHHHHHHHHhCCCceEEE--ecCCCCHHHHH
Q psy2378 145 DINSYDFVRDFVGTVSSAG-CRTFIVHARNAFL-KKLNPKQNRKIPILKYNFVYNLKKDFPELEIII--NGGIKTKKEID 220 (956)
Q Consensus 145 ~~~~~~~~~~~a~~l~~~G-~~~i~vh~r~~~~-~g~~~~~~~~~~~~~~~~i~~v~~~~~~ipVi~--nGgI~s~~da~ 220 (956)
+.++..+.|+.++++| +|+|.+....... .| |..-...+..-++.++.+++.+ ++||+. +.++.+..+..
T Consensus 102 ---~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g--g~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a 175 (301)
T PRK07259 102 ---TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG--GMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIA 175 (301)
T ss_pred ---CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC--ccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHH
Confidence 2356889999999999 9999985433110 10 1111111223457788888887 799885 33444444444
Q ss_pred HHhhh--cCEEEE
Q psy2378 221 LHLNY--IDGVML 231 (956)
Q Consensus 221 ~~l~~--ad~Vmi 231 (956)
+.++. +|++.+
T Consensus 176 ~~l~~~G~d~i~~ 188 (301)
T PRK07259 176 KAAEEAGADGLSL 188 (301)
T ss_pred HHHHHcCCCEEEE
Confidence 44444 898854
No 500
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.75 E-value=0.69 Score=49.49 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCEEEec-------CCCCcceeeeCcccccccCChHHHHHHHHHHhhccCccEEEEeccCCCCCCcHHHH
Q psy2378 80 KSAKIIQKWGYDEINLN-------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 152 (956)
Q Consensus 80 ~aA~~~~~~G~d~IeiN-------~gCP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~~ 152 (956)
-.|+.++++||++|=+- .|-| |. .+ -..+.+.+.++.|...+++||++-+..|+.+. ..+.
T Consensus 20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~p------D~---~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~--~~~v 87 (238)
T PF13714_consen 20 LSARLAERAGFDAIATSGAGVAASLGYP------DG---GL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGND--PENV 87 (238)
T ss_dssp HHHHHHHHTT-SEEEEHHHHHHHHTTS-------SS---S--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSS--HHHH
T ss_pred HHHHHHHHcCCCEEEechHHHHHHcCCC------CC---CC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCch--hHHH
Confidence 45788889999998872 3455 32 12 24566678889999999999999999998662 2457
Q ss_pred HHHHHHHHHcCCCEEEEcc
Q psy2378 153 RDFVGTVSSAGCRTFIVHA 171 (956)
Q Consensus 153 ~~~a~~l~~~G~~~i~vh~ 171 (956)
.+.++.++++|+..|++--
T Consensus 88 ~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHcCCcEEEeec
Confidence 8899999999999999964
Done!