BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>psy2378
MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN
AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV
SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN
PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF
LMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGL
ICMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKK
AKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARA
QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQI
SIKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNKSLVNLIKNKTPRHRAREFAL
QGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSI
NELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSL
PIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFH
SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT
LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN
YYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKIEKKCLIFEFMLNALRLKDGF
SPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with dusA dusA dusA tRNA-dihydrouridine synthase A	protein from Escherichia coli K-12	2.9e-70
BLAST match view associations BLAST with dusA dusA dusA tRNA-dihydrouridine synthase A	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.0e-68
BLAST match view associations BLAST with VC_0379 VC_0379 VC_0379 TIM-barrel protein, yjbN family	protein from Vibrio cholerae O1 biovar El Tor	1.0e-68
BLAST match view associations BLAST with CBU_0904 CBU_0904 CBU_0904 tRNA-dihydrouridine synthase	protein from Coxiella burnetii RSA 493	9.2e-68
BLAST match view associations BLAST with CBU_0904 CBU_0904 CBU_0904 TIM-barrel protein, yjbN family	protein from Coxiella burnetii RSA 493	9.2e-68
BLAST match view associations BLAST with MCA1669 MCA1669 MCA1669 tRNA-dihydrouridine synthase	protein from Methylococcus capsulatus str. Bath	1.5e-67
BLAST match view associations BLAST with CPS_0353 CPS_0353 CPS_0353 tRNA-dihydrouridine synthase	protein from Colwellia psychrerythraea 34H	3.1e-67
BLAST match view associations BLAST with CPS_0353 CPS_0353 CPS_0353 TIM-barrel protein, yjbN family	protein from Colwellia psychrerythraea 34H	3.1e-67
BLAST match view associations BLAST with dusA dusA dusA tRNA-dihydrouridine synthase A	protein from Pseudomonas syringae pv. tomato str. DC3000	1.3e-66
BLAST match view associations BLAST with dusA dusA dusA tRNA-dihydrouridine synthase A	protein from Shewanella oneidensis MR-1	1.7e-66
BLAST match view associations BLAST with SO_3912 SO_3912 SO_3912 TIM-barrel protein, yjbN family	protein from Shewanella oneidensis MR-1	1.7e-66
BLAST match view associations BLAST with dusA dusA dusA tRNA-dihydrouridine synthase	protein from Hyphomonas neptunium ATCC 15444	8.6e-63
BLAST match view associations BLAST with CBU_0597 CBU_0597 CBU_0597 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Coxiella burnetii RSA 493	3.3e-62
BLAST match view associations BLAST with BUsg_532 BUsg_532 BUsg_532 Oxygen-independent coproporphyrinogen-III oxidase-like protein BUsg_532	protein from Buchnera aphidicola str. Sg (Schizaphis graminum)	5.4e-62
BLAST match view associations BLAST with SPO_2374 SPO_2374 SPO_2374 tRNA-dihydrouridine synthase A	protein from Ruegeria pomeroyi DSS-3	4.4e-60
BLAST match view associations BLAST with CPS_3668 CPS_3668 CPS_3668 putative oxygen-independent coproporphyrinogen III oxidase	protein from Colwellia psychrerythraea 34H	4.3e-58
BLAST match view associations BLAST with yggW yggW yggW Radical SAM superfamily protein YggW	protein from Shewanella oneidensis MR-1	3.7e-57
BLAST match view associations BLAST with SO_3359 SO_3359 SO_3359 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Shewanella oneidensis MR-1	3.7e-57
BLAST match view associations BLAST with VC_0455 VC_0455 VC_0455 Oxygen-independent coproporphyrinogen III oxidase, putative	protein from Vibrio cholerae O1 biovar El Tor str. N16961	7.5e-54
BLAST match view associations BLAST with VC_0455 VC_0455 VC_0455 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Vibrio cholerae O1 biovar El Tor	7.5e-54
BLAST match view associations BLAST with SO_3467 SO_3467 SO_3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative	protein from Shewanella oneidensis MR-1	1.4e-53
BLAST match view associations BLAST with yggW yggW yggW predicted oxidoreductase	protein from Escherichia coli K-12	8.7e-53
BLAST match view associations BLAST with VC_2269 VC_2269 VC_2269 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.6e-51
BLAST match view associations BLAST with VC_2269 VC_2269 VC_2269 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	protein from Vibrio cholerae O1 biovar El Tor	4.6e-51
BLAST match view associations BLAST with AT3G63510 AT3G63510 AT3G63510	protein from Arabidopsis thaliana	4.3e-50
BLAST match view associations BLAST with GSU_1690 GSU_1690 GSU_1690 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	protein from Geobacter sulfurreducens PCA	1.4e-48
BLAST match view associations BLAST with PFI0920c PFI0920c PFI0920c Dihydrouridine synthase, putative	gene from Plasmodium falciparum	1.8e-48
BLAST match view associations BLAST with PFI0920c PFI0920c PFI0920c Dihydrouridine synthase, putative	protein from Plasmodium falciparum 3D7	1.8e-48
BLAST match view associations BLAST with AT5G47970 AT5G47970 AT5G47970	protein from Arabidopsis thaliana	2.4e-48
BLAST match view associations BLAST with DET_1188 DET_1188 DET_1188 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	protein from Dehalococcoides ethenogenes 195	1.0e-47
BLAST match view associations BLAST with CPS_0732 CPS_0732 CPS_0732 3,4-dihydroxy-2-butanone-4-phosphate synthase	protein from Colwellia psychrerythraea 34H	1.3e-47
BLAST match view associations BLAST with CBU_0647 CBU_0647 CBU_0647 riboflavin biosynthesis protein RibA	protein from Coxiella burnetii RSA 493	3.2e-44
BLAST match view associations BLAST with ribB ribB ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Escherichia coli K-12	3.2e-41
BLAST match view associations BLAST with CHY_1473 CHY_1473 CHY_1473 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	protein from Carboxydothermus hydrogenoformans Z-2901	6.2e-40
BLAST match view associations BLAST with SPO_1761 SPO_1761 SPO_1761 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative	protein from Ruegeria pomeroyi DSS-3	1.0e-39
BLAST match view associations BLAST with BA_4333 BA_4333 BA_4333 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	protein from Bacillus anthracis str. Ames	1.5e-39
BLAST match view associations BLAST with APH_1332 APH_1332 APH_1332 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Anaplasma phagocytophilum str. HZ	9.5e-39
BLAST match view associations BLAST with SO_0142 SO_0142 SO_0142 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Shewanella oneidensis MR-1	4.2e-38
BLAST match view associations BLAST with ribB ribB ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.4e-38
BLAST match view associations BLAST with VC_A1060 VC_A1060 VC_A1060 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Vibrio cholerae O1 biovar El Tor	5.4e-38
BLAST match view associations BLAST with RIBA2 RIBA2 RIBA2 AT2G22450	protein from Arabidopsis thaliana	5.4e-38
BLAST match view associations BLAST with GCH GCH GCH AT5G64300	protein from Arabidopsis thaliana	1.0e-36
BLAST match view associations BLAST with ECH_0134 ECH_0134 ECH_0134 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Ehrlichia chaffeensis str. Arkansas	2.2e-36
BLAST match view associations BLAST with SPO_0006 SPO_0006 SPO_0006 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Ruegeria pomeroyi DSS-3	9.4e-36
BLAST match view associations BLAST with CJE_0675 CJE_0675 CJE_0675 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Campylobacter jejuni RM1221	9.7e-36
BLAST match view associations BLAST with DET_0858 DET_0858 DET_0858 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Dehalococcoides ethenogenes 195	5.2e-35
BLAST match view associations BLAST with ribBA ribBA ribBA Riboflavin biosynthesis protein RibBA	protein from Mycobacterium tuberculosis	1.7e-33
BLAST match view associations BLAST with BA_4542 BA_4542 BA_4542 oxygen-independent coproporphyrinogen III oxidase	protein from Bacillus anthracis str. Ames	4.3e-32
BLAST match view associations BLAST with RIB3 RIB3 RIB3	gene_product from Candida albicans	3.1e-31
BLAST match view associations BLAST with RIB3 RIB3 RIB3 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Candida albicans SC5314	3.1e-31
BLAST match view associations BLAST with GSU_0030 GSU_0030 GSU_0030 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Geobacter sulfurreducens PCA	2.3e-30
BLAST match view associations BLAST with AT5G63290 AT5G63290 AT5G63290	protein from Arabidopsis thaliana	1.2e-28
BLAST match view associations BLAST with RIB3 RIB3 RIB3 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Magnaporthe oryzae 70-15	1.9e-28
BLAST match view associations BLAST with RIB3 RIB3 RIB3 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase)	gene from Saccharomyces cerevisiae	2.5e-28
BLAST match view associations BLAST with CHY_0411 CHY_0411 CHY_0411 putative oxygen-independent coproporphyrinogen III oxidase	protein from Carboxydothermus hydrogenoformans Z-2901	1.4e-27
BLAST match view associations BLAST with NSE_0649 NSE_0649 NSE_0649 3,4-dihydroxy-2-butanone 4-phosphate synthase	protein from Neorickettsia sennetsu str. Miyayama	1.4e-27
BLAST match view associations BLAST with CJE_0683 CJE_0683 CJE_0683 oxygen-independent coproporphyrinogen III oxidase, putative	protein from Campylobacter jejuni RM1221	5.6e-26
BLAST match view associations BLAST with RSAD1 RSAD1 RSAD1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial	protein from Bos taurus	7.1e-26
BLAST match view associations BLAST with RSAD1 RSAD1 RSAD1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial	protein from Bos taurus	7.1e-26
BLAST match view associations BLAST with rsad1 rsad1 rsad1 radical S-adenosyl methionine domain containing 1	gene_product from Danio rerio	1.1e-25
BLAST match view associations BLAST with LOC100513042 LOC100513042 LOC100513042 Uncharacterized protein	protein from Sus scrofa	6.4e-25
BLAST match view associations BLAST with Rsad1 Rsad1 Rsad1 radical S-adenosyl methionine domain containing 1	protein from Mus musculus	1.6e-24
BLAST match view associations BLAST with RSAD1 RSAD1 RSAD1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial	protein from Homo sapiens	2.1e-23
BLAST match view associations BLAST with DDB_G0280411 DDB_G0280411 DDB_G0280411 radical S-adenosyl methionine domain-containing protein	gene from Dictyostelium discoideum	1.6e-22
BLAST match view associations BLAST with CHY_2369 CHY_2369 CHY_2369 tRNA-dihydrouridine synthase	protein from Carboxydothermus hydrogenoformans Z-2901	1.1e-19
BLAST match view associations BLAST with CHY_2369 CHY_2369 CHY_2369 putative TIM-barrel protein, NifR3 family	protein from Carboxydothermus hydrogenoformans Z-2901	1.1e-19
BLAST match view associations BLAST with DDB_G0277081 DDB_G0277081 DDB_G0277081 tRNA-dihydrouridine synthase A	gene from Dictyostelium discoideum	3.0e-19
BLAST match view associations BLAST with CPS_1532 CPS_1532 CPS_1532 transcription termination/antitermination factor NusB	protein from Colwellia psychrerythraea 34H	1.2e-17
BLAST match view associations BLAST with CBU_1417 CBU_1417 CBU_1417 N utilization substance protein B	protein from Coxiella burnetii RSA 493	1.4e-16
BLAST match view associations BLAST with nusB nusB nusB transcription antitermination protein NusB	protein from Escherichia coli K-12	1.0e-15
BLAST match view associations BLAST with CJE_0432 CJE_0432 CJE_0432 6,7-dimethyl-8-ribityllumazine synthase	protein from Campylobacter jejuni RM1221	1.3e-15
BLAST match view associations BLAST with APH_0575 APH_0575 APH_0575 putative tRNA-dihydrouridine synthase	protein from Anaplasma phagocytophilum str. HZ	2.9e-15
BLAST match view associations BLAST with BA_4334 BA_4334 BA_4334 6,7-dimethyl-8-ribityllumazine synthase	protein from Bacillus anthracis str. Ames	1.6e-14
BLAST match view associations BLAST with VC_0116 VC_0116 VC_0116 Oxygen-independent coproporphyrinogen III oxidase	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.5e-14
BLAST match view associations BLAST with VC_0116 VC_0116 VC_0116 oxygen-independent coproporphyrinogen III oxidase	protein from Vibrio cholerae O1 biovar El Tor	3.5e-14
BLAST match view associations BLAST with MCA1745 MCA1745 MCA1745 tRNA-dihydrouridine synthase	protein from Methylococcus capsulatus str. Bath	4.5e-14
BLAST match view associations BLAST with ECH_0758 ECH_0758 ECH_0758 putative tRNA-dihydrouridine synthase	protein from Ehrlichia chaffeensis str. Arkansas	6.1e-14
BLAST match view associations BLAST with SO_3466 SO_3466 SO_3466 6,7-dimethyl-8-ribityllumazine synthase	protein from Shewanella oneidensis MR-1	8.7e-14
BLAST match view associations BLAST with BA_0075 BA_0075 BA_0075 tRNA-dihydrouridine synthase	protein from Bacillus anthracis	6.4e-13
BLAST match view associations BLAST with BA_0075 BA_0075 BA_0075 TIM-barrel protein, putative, NifR3 family	protein from Bacillus anthracis str. Ames	6.4e-13
BLAST match view associations BLAST with NSE_0373 NSE_0373 NSE_0373 putative tRNA-dihydrouridine synthase	protein from Neorickettsia sennetsu str. Miyayama	7.4e-13
BLAST match view associations BLAST with GSU_1691 GSU_1691 GSU_1691 6,7-dimethyl-8-ribityllumazine synthase	protein from Geobacter sulfurreducens PCA	1.0e-12
BLAST match view associations BLAST with DUS4 DUS4 DUS4	gene_product from Candida albicans	1.1e-12
BLAST match view associations BLAST with CHY_1472 CHY_1472 CHY_1472 6,7-dimethyl-8-ribityllumazine synthase	protein from Carboxydothermus hydrogenoformans Z-2901	1.7e-12
BLAST match view associations BLAST with CPS_1531 CPS_1531 CPS_1531 6,7-dimethyl-8-ribityllumazine synthase	protein from Colwellia psychrerythraea 34H	1.7e-12
BLAST match view associations BLAST with dus4l dus4l dus4l dihydrouridine synthase 4-like (S. cerevisiae)	gene_product from Danio rerio	2.4e-12
BLAST match view associations BLAST with ribE ribE ribE RibE	protein from Escherichia coli K-12	4.4e-12
BLAST match view associations BLAST with SO_3465 SO_3465 SO_3465 N utilization substance protein B	protein from Shewanella oneidensis MR-1	4.4e-12
BLAST match view associations BLAST with dus1l dus1l dus1l tRNA-dihydrouridine synthase 1-like protein	gene from Dictyostelium discoideum	7.1e-12
BLAST match view associations BLAST with DUS4L DUS4L DUS4L tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like	protein from Homo sapiens	1.1e-11
BLAST match view associations BLAST with DUS4L DUS4L DUS4L Uncharacterized protein	protein from Canis lupus familiaris	1.5e-11
BLAST match view associations BLAST with hemN hemN hemN coproporphyrinogen III dehydrogenase	protein from Escherichia coli K-12	1.7e-11
BLAST match view associations BLAST with DUS4L DUS4L DUS4L tRNA-dihydrouridine synthase	protein from Gallus gallus	3.6e-11
BLAST match view associations BLAST with CPS_4823 CPS_4823 CPS_4823 oxygen-independent coproporphyrinogen III oxidase	protein from Colwellia psychrerythraea 34H	3.7e-11
BLAST match view associations BLAST with CBU_0648 CBU_0648 CBU_0648 6,7-dimethyl-8-ribityllumazine synthase	protein from Coxiella burnetii RSA 493	4.1e-11
BLAST match view associations BLAST with nusB nusB nusB N utilization substance protein B homolog	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.2e-11
BLAST match view associations BLAST with VC_2267 VC_2267 VC_2267 N utilization substance protein B	protein from Vibrio cholerae O1 biovar El Tor	5.2e-11
BLAST match view associations BLAST with orf19.1404 orf19.1404 orf19.1404	gene_product from Candida albicans	8.2e-11
BLAST match view associations BLAST with DET_1187 DET_1187 DET_1187 6,7-dimethyl-8-ribityllumazine synthase	protein from Dehalococcoides ethenogenes 195	8.5e-11
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy2378
        (956 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|P32695 - symbol:dusA "tRNA-dihydrouridine synth...   693  2.9e-70   2
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth...   697  1.0e-68   1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj...   697  1.0e-68   1
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s...   688  9.2e-68   1
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ...   688  9.2e-68   1
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy...   686  1.5e-67   1
UNIPROTKB|Q48A03 - symbol:CPS_0353 "tRNA-dihydrouridine s...   683  3.1e-67   1
TIGR_CMR|CPS_0353 - symbol:CPS_0353 "TIM-barrel protein, ...   683  3.1e-67   1
UNIPROTKB|Q884G7 - symbol:dusA "tRNA-dihydrouridine synth...   677  1.3e-66   1
UNIPROTKB|Q8EAJ0 - symbol:dusA "tRNA-dihydrouridine synth...   676  1.7e-66   1
TIGR_CMR|SO_3912 - symbol:SO_3912 "TIM-barrel protein, yj...   676  1.7e-66   1
UNIPROTKB|Q0C5H0 - symbol:dusA "tRNA-dihydrouridine synth...   644  8.6e-63   1
TIGR_CMR|CBU_0597 - symbol:CBU_0597 "oxygen-independent c...   550  3.3e-62   2
UNIPROTKB|Q8K928 - symbol:BUsg_532 "Oxygen-independent co...   550  5.4e-62   2
TIGR_CMR|SPO_2374 - symbol:SPO_2374 "tRNA-dihydrouridine ...   620  4.4e-60   1
TIGR_CMR|CPS_3668 - symbol:CPS_3668 "putative oxygen-inde...   508  4.3e-58   2
UNIPROTKB|Q8EBY6 - symbol:yggW "Radical SAM superfamily p...   532  3.7e-57   2
TIGR_CMR|SO_3359 - symbol:SO_3359 "oxygen-independent cop...   532  3.7e-57   2
UNIPROTKB|Q9KUR0 - symbol:VC_0455 "Oxygen-independent cop...   501  7.5e-54   2
TIGR_CMR|VC_0455 - symbol:VC_0455 "oxygen-independent cop...   501  7.5e-54   2
TIGR_CMR|SO_3467 - symbol:SO_3467 "3,4-dihydroxy-2-butano...   561  1.4e-53   1
UNIPROTKB|P52062 - symbol:yggW "predicted oxidoreductase"...   498  8.7e-53   2
UNIPROTKB|Q9KPU3 - symbol:VC_2269 "3,4-dihydroxy-2-butano...   538  4.6e-51   1
TIGR_CMR|VC_2269 - symbol:VC_2269 "3,4-dihydroxy-2-butano...   538  4.6e-51   1
TAIR|locus:2087408 - symbol:AT3G63510 species:3702 "Arabi...   529  4.3e-50   1
TIGR_CMR|GSU_1690 - symbol:GSU_1690 "3,4-dihydroxy-2-buta...   515  1.4e-48   1
GENEDB_PFALCIPARUM|PFI0920c - symbol:PFI0920c "Dihydrouri...   497  1.8e-48   2
UNIPROTKB|Q8I2W5 - symbol:PFI0920c "Dihydrouridine syntha...   497  1.8e-48   2
TAIR|locus:2152758 - symbol:AT5G47970 species:3702 "Arabi...   513  2.4e-48   1
TIGR_CMR|DET_1188 - symbol:DET_1188 "3,4-dihydroxy-2-buta...   495  1.0e-47   2
TIGR_CMR|CPS_0732 - symbol:CPS_0732 "3,4-dihydroxy-2-buta...   490  1.3e-47   2
TIGR_CMR|CBU_0647 - symbol:CBU_0647 "riboflavin biosynthe...   460  3.2e-44   2
UNIPROTKB|P0A7J0 - symbol:ribB "3,4-dihydroxy-2-butanone ...   447  3.2e-41   1
TIGR_CMR|CHY_1473 - symbol:CHY_1473 "3,4-dihydroxy-2-buta...   435  6.2e-40   1
TIGR_CMR|SPO_1761 - symbol:SPO_1761 "3,4-dihydroxy-2-buta...   433  1.0e-39   1
TIGR_CMR|BA_4333 - symbol:BA_4333 "3,4-dihydroxy-2-butano...   412  1.5e-39   2
TIGR_CMR|APH_1332 - symbol:APH_1332 "3,4-dihydroxy-2-buta...   424  9.5e-39   1
TIGR_CMR|SO_0142 - symbol:SO_0142 "3,4-dihydroxy-2-butano...   418  4.2e-38   1
UNIPROTKB|Q9KKP2 - symbol:ribB "3,4-dihydroxy-2-butanone ...   417  5.4e-38   1
TIGR_CMR|VC_A1060 - symbol:VC_A1060 "3,4-dihydroxy-2-buta...   417  5.4e-38   1
TAIR|locus:2041253 - symbol:RIBA2 "homolog of ribA 2" spe...   417  5.4e-38   1
TAIR|locus:2173373 - symbol:GCH "GTP cyclohydrolase II" s...   405  1.0e-36   1
TIGR_CMR|ECH_0134 - symbol:ECH_0134 "3,4-dihydroxy-2-buta...   402  2.2e-36   1
TIGR_CMR|SPO_0006 - symbol:SPO_0006 "oxygen-independent c...   371  9.4e-36   2
TIGR_CMR|CJE_0675 - symbol:CJE_0675 "3,4-dihydroxy-2-buta...   396  9.7e-36   1
TIGR_CMR|DET_0858 - symbol:DET_0858 "oxygen-independent c...   368  5.2e-35   2
UNIPROTKB|P0A5V0 - symbol:ribBA "Riboflavin biosynthesis ...   375  1.7e-33   1
TIGR_CMR|BA_4542 - symbol:BA_4542 "oxygen-independent cop...   362  4.3e-32   1
CGD|CAL0003526 - symbol:RIB3 species:5476 "Candida albica...   354  3.1e-31   1
UNIPROTKB|Q5A3V6 - symbol:RIB3 "3,4-dihydroxy-2-butanone ...   354  3.1e-31   1
TIGR_CMR|GSU_0030 - symbol:GSU_0030 "oxygen-independent c...   346  2.3e-30   1
POMBASE|SPBC23E6.06c - symbol:SPBC23E6.06c "3,4-dihydroxy...   343  4.7e-30   1
TAIR|locus:2161897 - symbol:AT5G63290 species:3702 "Arabi...   342  1.2e-28   1
UNIPROTKB|Q8TG90 - symbol:RIB3 "3,4-dihydroxy-2-butanone ...   328  1.9e-28   1
SGD|S000002895 - symbol:RIB3 "3,4-dihydroxy-2-butanone-4-...   327  2.5e-28   1
TIGR_CMR|CHY_0411 - symbol:CHY_0411 "putative oxygen-inde...   320  1.4e-27   1
TIGR_CMR|NSE_0649 - symbol:NSE_0649 "3,4-dihydroxy-2-buta...   320  1.4e-27   1
TIGR_CMR|CJE_0683 - symbol:CJE_0683 "oxygen-independent c...   305  5.6e-26   1
UNIPROTKB|A5D7B1 - symbol:RSAD1 "Radical S-adenosyl methi...   315  7.1e-26   1
UNIPROTKB|G5E5Q7 - symbol:RSAD1 "Radical S-adenosyl methi...   315  7.1e-26   1
ZFIN|ZDB-GENE-030131-2508 - symbol:rsad1 "radical S-adeno...   314  1.1e-25   1
UNIPROTKB|F1RT95 - symbol:RSAD1 "Uncharacterized protein"...   308  6.4e-25   1
MGI|MGI:3039628 - symbol:Rsad1 "radical S-adenosyl methio...   305  1.6e-24   1
UNIPROTKB|Q9HA92 - symbol:RSAD1 "Radical S-adenosyl methi...   296  2.1e-23   1
DICTYBASE|DDB_G0280411 - symbol:DDB_G0280411 "radical S-a...   289  1.6e-22   1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s...   246  1.1e-19   1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ...   246  1.1e-19   1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr...   251  3.0e-19   2
TIGR_CMR|CPS_1532 - symbol:CPS_1532 "transcription termin...   227  1.2e-17   1
TIGR_CMR|CBU_1417 - symbol:CBU_1417 "N utilization substa...   217  1.4e-16   1
UNIPROTKB|P0A780 - symbol:nusB "transcription antitermina...   209  1.0e-15   1
TIGR_CMR|CJE_0432 - symbol:CJE_0432 "6,7-dimethyl-8-ribit...   208  1.3e-15   1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr...   217  2.9e-15   1
TIGR_CMR|BA_4334 - symbol:BA_4334 "6,7-dimethyl-8-ribityl...   198  1.6e-14   1
UNIPROTKB|Q9KVM5 - symbol:VC_0116 "Oxygen-independent cop...   216  3.5e-14   1
TIGR_CMR|VC_0116 - symbol:VC_0116 "oxygen-independent cop...   216  3.5e-14   1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy...   209  4.5e-14   1
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr...   207  6.1e-14   1
TIGR_CMR|SO_3466 - symbol:SO_3466 "6,7-dimethyl-8-ribityl...   191  8.7e-14   1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy...   200  6.4e-13   1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu...   200  6.4e-13   1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr...   199  7.4e-13   1
TIGR_CMR|GSU_1691 - symbol:GSU_1691 "6,7-dimethyl-8-ribit...   181  1.0e-12   1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a...   198  1.1e-12   1
TIGR_CMR|CHY_1472 - symbol:CHY_1472 "6,7-dimethyl-8-ribit...   179  1.7e-12   1
TIGR_CMR|CPS_1531 - symbol:CPS_1531 "6,7-dimethyl-8-ribit...   179  1.7e-12   1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s...   193  2.4e-12   1
UNIPROTKB|P61714 - symbol:ribE "RibE" species:83333 "Esch...   175  4.4e-12   1
TIGR_CMR|SO_3465 - symbol:SO_3465 "N utilization substanc...   175  4.4e-12   1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin...   194  7.1e-12   1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/...   188  1.1e-11   1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"...   187  1.5e-11   1
UNIPROTKB|P32131 - symbol:hemN "coproporphyrinogen III de...   198  1.7e-11   2
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt...   183  3.6e-11   1
TIGR_CMR|CPS_4823 - symbol:CPS_4823 "oxygen-independent c...   188  3.7e-11   1
TIGR_CMR|CBU_0648 - symbol:CBU_0648 "6,7-dimethyl-8-ribit...   166  4.1e-11   1
UNIPROTKB|Q9KPU5 - symbol:nusB "N utilization substance p...   165  5.2e-11   1
TIGR_CMR|VC_2267 - symbol:VC_2267 "N utilization substanc...   165  5.2e-11   1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ...   185  8.2e-11   1
TIGR_CMR|DET_1187 - symbol:DET_1187 "6,7-dimethyl-8-ribit...   163  8.5e-11   1

WARNING:  Descriptions of 74 database sequences were not reported due to the
          limiting value of parameter V = 100.


>UNIPROTKB|P32695 [details] [associations]
            symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
            "Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
            binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
            evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
            activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
            process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
            PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
            ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
            EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
            GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
            PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
            HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
            BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
            BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
            TIGRFAMs:TIGR00742 Uniprot:P32695
        Length = 330

 Score = 693 (249.0 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
 Identities = 133/242 (54%), Positives = 176/242 (72%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
             + S+APM++ TDRHCR F R ++R + LYTEM TT AI+  K   L ++ EEHP+A Q+G
Sbjct:    12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
              ++P  LA+ AK+ +  GYDEINLN GCPS+RVQNG FGA LM    LV+DC+KAMRD V
Sbjct:    72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131

Query:   132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPIL 190
              I +TVK RIGIDD +SY+F+ DF+ TVS  G C  FI+HAR A+L  L+PK+NR+IP L
Sbjct:   132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY 250
              Y  VY LK+DFP L + INGGIK+ +E   HL ++DGVM+GREAY+NP +++  D   +
Sbjct:   192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251

Query:   251 SN 252
              +
Sbjct:   252 GS 253

 Score = 37 (18.1 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:   584 DINFLRYDLSLIIDR 598
             DIN L + L L+ D+
Sbjct:   315 DINVLEHALKLVADK 329


>UNIPROTKB|Q9KUX9 [details] [associations]
            symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
            DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
            Uniprot:Q9KUX9
        Length = 327

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 129/236 (54%), Positives = 174/236 (73%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
             ++S+APM++ TDRHCR FHR ++  + LYTEM TT AI+  +   L +N EEHP+A Q G
Sbjct:     6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
              + PK LA  AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR  V
Sbjct:    66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125

Query:   132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             +I +TVK RIGIDD +SY+F+  F+ TV+   GC  F +HAR A+L  L+PK+NR+IP L
Sbjct:   126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
              Y   Y +K+DFP L I +NGG+K+ +E  LHL ++DGVM+GREAY+NP+L++  D
Sbjct:   186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241


>TIGR_CMR|VC_0379 [details] [associations]
            symbol:VC_0379 "TIM-barrel protein, yjbN family"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
            DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
            Uniprot:Q9KUX9
        Length = 327

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 129/236 (54%), Positives = 174/236 (73%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
             ++S+APM++ TDRHCR FHR ++  + LYTEM TT AI+  +   L +N EEHP+A Q G
Sbjct:     6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
              + PK LA  AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR  V
Sbjct:    66 GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125

Query:   132 EIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             +I +TVK RIGIDD +SY+F+  F+ TV+   GC  F +HAR A+L  L+PK+NR+IP L
Sbjct:   126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
              Y   Y +K+DFP L I +NGG+K+ +E  LHL ++DGVM+GREAY+NP+L++  D
Sbjct:   186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVD 241


>UNIPROTKB|Q83D40 [details] [associations]
            symbol:CBU_0904 "tRNA-dihydrouridine synthase"
            species:227377 "Coxiella burnetii RSA 493" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
            ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
            ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
            KEGG:cbu:CBU_0904 PATRIC:17930509
            BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
        Length = 353

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 135/237 (56%), Positives = 173/237 (72%)

Query:    11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQ 69
             R+ISIAPMM  TDRH RMF RQI+R+  LYTEM TT A+L  K+  CLD++ EEHP+A Q
Sbjct:    29 RRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQ 88

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
             VG ++P+ LA  A++ ++ G+DEINLN GCPS RV  G FGA L+ +  LV+DC+ AM  
Sbjct:    89 VGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSA 148

Query:   130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
              V I ++VK R G+DD +SY+ +  FV TV+ AGCR FI+HAR A+LK L+P +NR +P 
Sbjct:   149 EVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPP 208

Query:   190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
             L Y  VY LK+DFP LEIIINGGIKT + I+ HL  +DGVM+GREAY NP   + FD
Sbjct:   209 LAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFD 265


>TIGR_CMR|CBU_0904 [details] [associations]
            symbol:CBU_0904 "TIM-barrel protein, yjbN family"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
            ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
            ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
            KEGG:cbu:CBU_0904 PATRIC:17930509
            BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
        Length = 353

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 135/237 (56%), Positives = 173/237 (72%)

Query:    11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQ 69
             R+ISIAPMM  TDRH RMF RQI+R+  LYTEM TT A+L  K+  CLD++ EEHP+A Q
Sbjct:    29 RRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQ 88

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
             VG ++P+ LA  A++ ++ G+DEINLN GCPS RV  G FGA L+ +  LV+DC+ AM  
Sbjct:    89 VGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSA 148

Query:   130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
              V I ++VK R G+DD +SY+ +  FV TV+ AGCR FI+HAR A+LK L+P +NR +P 
Sbjct:   149 EVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPP 208

Query:   190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
             L Y  VY LK+DFP LEIIINGGIKT + I+ HL  +DGVM+GREAY NP   + FD
Sbjct:   209 LAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFD 265


>UNIPROTKB|Q607T6 [details] [associations]
            symbol:MCA1669 "tRNA-dihydrouridine synthase"
            species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
            ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
            ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
            PATRIC:22607174 Uniprot:Q607T6
        Length = 360

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 132/257 (51%), Positives = 187/257 (72%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAF 68
             + ++S+APMM+ TDRHCR F R I+R++ LYTEM TT AIL G+++  L F+  EHP+A 
Sbjct:    27 RHRLSVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRERLLGFHPAEHPLAI 86

Query:    69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             Q+G ++P+ LA+ AKI +  G+DE+NLN GCPS RVQ G FGA LM +P  V+DC++AM 
Sbjct:    87 QLGGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRAMC 146

Query:   129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
             ++V + +TVK RIGIDD +SY+ +  FV  V+ AGCRTFIVHAR A+L+ L+PK+NR+ P
Sbjct:   147 EAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKENRQTP 206

Query:   189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN 248
              L+Y+ V  LK + PEL I++NGGI+T  E + HL++ DGVM+GR AY NP+L++  D  
Sbjct:   207 PLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHLSWCDGVMIGRAAYHNPYLLAEADRR 266

Query:   249 YYSNLPQYKIPTRIDII 265
              Y +    +  TR ++I
Sbjct:   267 CYGH-SDVRPRTREEVI 282


>UNIPROTKB|Q48A03 [details] [associations]
            symbol:CPS_0353 "tRNA-dihydrouridine synthase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
            KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
            GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
            BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
        Length = 335

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 127/256 (49%), Positives = 184/256 (71%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
             K+S+APM++ TD+H R F+R +T+++ LYTEM TT AIL  K   L +N  EHP+  Q+G
Sbjct:    19 KLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLG 78

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
              ++ K + + AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+  M+ + 
Sbjct:    79 GSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSAT 138

Query:   132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
              I +TVK RIGIDD++SY+F+  F+  VS A CR FI+HAR A+L  L+PKQNR +P L 
Sbjct:   139 NIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLD 198

Query:   192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
             Y+ VY +K DF +LE+ INGGIKT  E + HL +IDGVM+GRE Y +P+++++ D   Y 
Sbjct:   199 YDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQ 258

Query:   252 NLPQYKIPTRIDIINL 267
             +    K+ +R ++I+L
Sbjct:   259 S-DTIKL-SRSEVIDL 272


>TIGR_CMR|CPS_0353 [details] [associations]
            symbol:CPS_0353 "TIM-barrel protein, yjbN family"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
            KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
            GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
            BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
        Length = 335

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 127/256 (49%), Positives = 184/256 (71%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
             K+S+APM++ TD+H R F+R +T+++ LYTEM TT AIL  K   L +N  EHP+  Q+G
Sbjct:    19 KLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLG 78

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
              ++ K + + AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+  M+ + 
Sbjct:    79 GSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSAT 138

Query:   132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
              I +TVK RIGIDD++SY+F+  F+  VS A CR FI+HAR A+L  L+PKQNR +P L 
Sbjct:   139 NIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLD 198

Query:   192 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS 251
             Y+ VY +K DF +LE+ INGGIKT  E + HL +IDGVM+GRE Y +P+++++ D   Y 
Sbjct:   199 YDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQ 258

Query:   252 NLPQYKIPTRIDIINL 267
             +    K+ +R ++I+L
Sbjct:   259 S-DTIKL-SRSEVIDL 272


>UNIPROTKB|Q884G7 [details] [associations]
            symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
            "Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
            KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
            KEGG:pst:PSPTO_2126 PATRIC:19995530
            BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
        Length = 336

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 131/244 (53%), Positives = 174/244 (71%)

Query:    11 RKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQ 69
             R+ S+APMM+ TD HCR F R ++  + LYTEM TT A+L G+++  L  +  EHP+A Q
Sbjct:    18 RRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQ 77

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
             +G +    LA  A++ +  GYDE+NLN GCPS+RVQN   GA LM  P LV+DC+KAMRD
Sbjct:    78 LGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRD 137

Query:   130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
             +V I +TVKHRIGI+  +SY  + DFVGTV  AGC++F VHAR A L+ L+PK+NR IP 
Sbjct:   138 AVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPP 197

Query:   190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 249
             L+Y+ V  LK DFPELEI++NGGIKT ++   HL   DGVMLGREAY NP+L++  D   
Sbjct:   198 LRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQL 257

Query:   250 YSNL 253
             + ++
Sbjct:   258 FGSV 261


>UNIPROTKB|Q8EAJ0 [details] [associations]
            symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
            GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
            OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
            KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
        Length = 335

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/245 (52%), Positives = 179/245 (73%)

Query:     2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
             N+ +SK   R  SIAPM++ TDRH R F R ++  + LYTEM TT AIL  +   L +N 
Sbjct:     5 NINDSKNLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQ 64

Query:    62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
             EEHP+A Q+G + P +LA+ AK+  + GYDE+NLN GCPS+RVQNG FGA LM +P LV+
Sbjct:    65 EEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVA 124

Query:   122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
             +C+ AM+  V+I +TVK RIGID+ +SY+F+  F+ TV + GC  FI+HAR A+L+ L+P
Sbjct:   125 ECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184

Query:   182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
             K+NR+IP L Y+ VY LK+D+P L I INGGI + ++   HL ++DGVM+GREAY+NP++
Sbjct:   185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYM 244

Query:   242 MSNFD 246
             ++  D
Sbjct:   245 LAQVD 249


>TIGR_CMR|SO_3912 [details] [associations]
            symbol:SO_3912 "TIM-barrel protein, yjbN family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
            KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
            KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
        Length = 335

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/245 (52%), Positives = 179/245 (73%)

Query:     2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA 61
             N+ +SK   R  SIAPM++ TDRH R F R ++  + LYTEM TT AIL  +   L +N 
Sbjct:     5 NINDSKNLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQ 64

Query:    62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
             EEHP+A Q+G + P +LA+ AK+  + GYDE+NLN GCPS+RVQNG FGA LM +P LV+
Sbjct:    65 EEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVA 124

Query:   122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
             +C+ AM+  V+I +TVK RIGID+ +SY+F+  F+ TV + GC  FI+HAR A+L+ L+P
Sbjct:   125 ECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184

Query:   182 KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 241
             K+NR+IP L Y+ VY LK+D+P L I INGGI + ++   HL ++DGVM+GREAY+NP++
Sbjct:   185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYM 244

Query:   242 MSNFD 246
             ++  D
Sbjct:   245 LAQVD 249


>UNIPROTKB|Q0C5H0 [details] [associations]
            symbol:dusA "tRNA-dihydrouridine synthase" species:228405
            "Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
            synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
            evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
            GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
            OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
            GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
            BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
        Length = 328

 Score = 644 (231.8 bits), Expect = 8.6e-63, P = 8.6e-63
 Identities = 123/246 (50%), Positives = 171/246 (69%)

Query:     6 SKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH 64
             SK    + S+APMM+ TDRHCR FHR +T+ + L+TEM T  A++ G+++  + F+  EH
Sbjct:     2 SKKQDYRFSVAPMMDWTDRHCRAFHRTLTKRALLWTEMVTADAVIHGDRQRLIGFSDVEH 61

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
             P+  Q+G +EP KLA++A+I + +GYDE+NLNCGCPS RVQ+G FGA LM +P LV+DC+
Sbjct:    62 PLVLQLGGSEPGKLAEAARIAEGYGYDEVNLNCGCPSERVQSGAFGACLMAEPDLVADCV 121

Query:   125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
              AMR +V I +TVK+RI IDD+ + + +  F+  VS AGC  F VHAR A+LK L+PK+N
Sbjct:   122 AAMRAAVSIPVTVKNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPKEN 181

Query:   185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
             R++P L Y  V  LK   P+L II+NGGI T  +   H+   DGVMLGR AY+ P L+  
Sbjct:   182 REVPPLDYGLVAELKTARPDLTIILNGGIATIDQCRDHIGVFDGVMLGRAAYQTPGLLGQ 241

Query:   245 FDLNYY 250
              D + +
Sbjct:   242 VDSDLF 247


>TIGR_CMR|CBU_0597 [details] [associations]
            symbol:CBU_0597 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:227377 "Coxiella burnetii RSA 493"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            GO:GO:0006779 GO:GO:0051536 EMBL:AE016828 GenomeReviews:AE016828_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            OMA:CEHNLNY HOGENOM:HOG000015379 RefSeq:NP_819627.1
            ProteinModelPortal:Q83DU5 GeneID:1208482 KEGG:cbu:CBU_0597
            PATRIC:17929887 ProtClustDB:CLSK914174
            BioCyc:CBUR227377:GJ7S-599-MONOMER Uniprot:Q83DU5
        Length = 375

 Score = 550 (198.7 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
 Identities = 110/240 (45%), Positives = 152/240 (63%)

Query:   642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXX 701
             ++ E+ Y+ AL+ ++   + +I  R IHTIFIGGGTPSL S T                 
Sbjct:    32 DLPEEAYINALINELRQQIALIEKRPIHTIFIGGGTPSLFSQTAYQKLFEEIKKQCLLKK 91

Query:   702 XXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
                ITLEANP + E  KF  Y  IGINRLSIG+QSF N  L +LGR H +++AK AI IA
Sbjct:    92 EVEITLEANPGSVEQTKFRGYREIGINRLSIGVQSFQNDKLKVLGRIHSAEEAKQAINIA 151

Query:   762 KQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 820
             KQ  F N N+DL++ LP+Q ++E + DL  A+   P HLS Y LT+EPNT+F+K+PP ++
Sbjct:   152 KQAGFENINVDLMFGLPDQKVNEALDDLQTALDLEPTHLSWYQLTLEPNTFFYKHPP-AL 210

Query:   821 PSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKI 880
             P++D    +Q K   LL+ + + +YE+SAYS++    QHN+NYW+FGDYLG       K+
Sbjct:   211 PTDDYIWEIQSKGRKLLRRDGFAHYEVSAYSRSNRFCQHNINYWEFGDYLGLGAGAHSKL 270

 Score = 118 (46.6 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query:   885 LIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 944
             L  EFM+NALRL+      LF ERTG++  ++   L+ A++  LL+ +NK +  T  G  
Sbjct:   307 LPLEFMMNALRLQKPIPLTLFTERTGLSPSVLVPWLETAKERNLLQCDNKYLTVTPLGHR 366

Query:   945 FLNDL 949
             FLN+L
Sbjct:   367 FLNEL 371


>UNIPROTKB|Q8K928 [details] [associations]
            symbol:BUsg_532 "Oxygen-independent coproporphyrinogen-III
            oxidase-like protein BUsg_532" species:198804 "Buchnera aphidicola
            str. Sg (Schizaphis graminum)" [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            GO:GO:0046872 EMBL:AE013218 GenomeReviews:AE013218_GR GO:GO:0051539
            GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            eggNOG:COG0635 KO:K02495 TIGRFAMs:TIGR00539 RefSeq:NP_660862.1
            ProteinModelPortal:Q8K928 EnsemblBacteria:EBBUCT00000000213
            GeneID:1005648 KEGG:bas:BUsg532 PATRIC:21247936 OMA:CEHNLNY
            ProtClustDB:CLSK552878 BioCyc:BAPH198804:GHMG-575-MONOMER
            Uniprot:Q8K928
        Length = 376

 Score = 550 (198.7 bits), Expect = 5.4e-62, Sum P(2) = 5.4e-62
 Identities = 109/243 (44%), Positives = 157/243 (64%)

Query:   638 KSFGNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXX 697
             KSF  I EK+Y++ LL D+E  L +I  R+I++IFIGGGTPSL+  + +           
Sbjct:    31 KSF--IPEKEYIDHLLKDLEKDLSLIKEREINSIFIGGGTPSLLKSSSIKKMMREIKKRI 88

Query:   698 XXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 757
                    IT+EANP+T E ++F +Y   GINR SIG+Q+FN+  L  + RT++ ++A  A
Sbjct:    89 NISNTAEITIEANPTTLEYKRFFNYKKSGINRFSIGVQTFNSDLLKKIERTYNKREAILA 148

Query:   758 IEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 817
             +E  K+   NFNLD++Y LPNQ+L +++LDL YA++Y+P H+S Y LT+EPNT F+    
Sbjct:   149 VEEIKKINKNFNLDIMYGLPNQSLKDVLLDLQYAVKYNPTHISWYQLTLEPNTPFY-VKK 207

Query:   818 LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKS 877
             L++P+ +    M  +    LK + YK YEIS+Y+K  YE QHNLNYW FGDY+G   +  
Sbjct:   208 LNLPNENNIFKMLVEGEKFLKQSGYKKYEISSYAKLNYECQHNLNYWNFGDYIGIGCSAH 267

Query:   878 KKI 880
              KI
Sbjct:   268 GKI 270

 Score = 116 (45.9 bits), Expect = 5.4e-62, Sum P(2) = 5.4e-62
 Identities = 32/89 (35%), Positives = 43/89 (48%)

Query:   868 DYLGNSIAKSKK-IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKL 926
             D++     K K  + KK   FE+ +N  RL        F ERT IN   I+ K+K A + 
Sbjct:   288 DFMNGKYLKHKNFVLKKDKPFEYFMNIFRLYKPVLKRQFEERTNINQNYIKEKIKKAIEK 347

Query:   927 GLLKRNNKNIKPTSFGRYFLNDLQQIFLN 955
             G LK        T  G+ FLN L +IFL+
Sbjct:   348 GYLKNKIDFWDTTKKGKMFLNSLLKIFLD 376

 Score = 68 (29.0 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
 Identities = 43/164 (26%), Positives = 73/164 (44%)

Query:   115 TKPLLVSDCIKAMRDSVE--IDITVKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHA 171
             T  LL S  IK M   ++  I+I+    I I+ +  + ++ R F      +G   F +  
Sbjct:    68 TPSLLKSSSIKKMMREIKKRINISNTAEITIEANPTTLEYKRFF--NYKKSGINRFSIGV 125

Query:   172 R--NA-FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG 228
             +  N+  LKK+    N++  IL    +  + K+F  L+I+     ++ K++ L L Y   
Sbjct:   126 QTFNSDLLKKIERTYNKREAILAVEEIKKINKNF-NLDIMYGLPNQSLKDVLLDLQY--- 181

Query:   229 VMLGREAYK-NPFLMSNFDLNYYSNLPQYKIPTRIDIINLDSEN 271
                   A K NP  +S + L    N P Y     +  +NL +EN
Sbjct:   182 ------AVKYNPTHISWYQLTLEPNTPFY-----VKKLNLPNEN 214


>TIGR_CMR|SPO_2374 [details] [associations]
            symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
            modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
            OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
            RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
            KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
        Length = 344

 Score = 620 (223.3 bits), Expect = 4.4e-60, P = 4.4e-60
 Identities = 115/230 (50%), Positives = 168/230 (73%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQV 70
             ++S APMM+ TDRHCR  HR ++R + LYTEM T  A++ G   H L+++ EEHP+A Q+
Sbjct:    12 RMSCAPMMDWTDRHCRYLHRLLSRQTLLYTEMVTAPALVRGGALHLLEYSVEEHPVALQL 71

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
             G ++P++LA++A++  + GYDEINLNCGCPS+RVQ+G FGA+LM  P LV+DC+ AMR++
Sbjct:    72 GGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVADCVTAMREA 131

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             V++++TVK RIG+DD +    + +F+  ++ AGC+  I+HAR A+L+ L+PK+NR IP L
Sbjct:   132 VDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQRVIIHARKAWLQGLSPKENRDIPPL 191

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP 239
              Y+ V+ +K  FP + I INGGI T      HL+  +DGVM+GR AY  P
Sbjct:   192 DYDLVHRMKARFPGMHISINGGIDTLAAARAHLDAGLDGVMIGRAAYHQP 241


>TIGR_CMR|CPS_3668 [details] [associations]
            symbol:CPS_3668 "putative oxygen-independent
            coproporphyrinogen III oxidase" species:167879 "Colwellia
            psychrerythraea 34H" [GO:0004109 "coproporphyrinogen oxidase
            activity" evidence=ISS] [GO:0006779 "porphyrin-containing compound
            biosynthetic process" evidence=ISS] InterPro:IPR004559
            InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            GO:GO:0005737 GO:GO:0006779 GO:GO:0051536 EMBL:CP000083
            GenomeReviews:CP000083_GR Gene3D:3.80.30.20 InterPro:IPR023404
            GO:GO:0004109 eggNOG:COG0635 KO:K02495 InterPro:IPR010723
            Pfam:PF06969 TIGRFAMs:TIGR00539 OMA:CEHNLNY HOGENOM:HOG000015379
            RefSeq:YP_270336.1 ProteinModelPortal:Q47XY4 STRING:Q47XY4
            GeneID:3519722 KEGG:cps:CPS_3668 PATRIC:21470263
            BioCyc:CPSY167879:GI48-3690-MONOMER Uniprot:Q47XY4
        Length = 388

 Score = 508 (183.9 bits), Expect = 4.3e-58, Sum P(2) = 4.3e-58
 Identities = 117/261 (44%), Positives = 153/261 (58%)

Query:   623 KIPYKVIINEAIELVKSFGNIDEKKYLEALLIDVELSLPI--ILNRKIHTIFIGGGTPSL 680
             K PY    + A   VKS   I E+ Y+ AL+ D++  +    +  R +H+IFIGGGTPSL
Sbjct:    22 KCPYCDFNSHA---VKSA--IPEQDYVAALIRDLDADIARFGLSTRSLHSIFIGGGTPSL 76

Query:   681 ISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNK 740
              S   +                  ITLEANP T E +KF  +   G+NRLSIG+QSF + 
Sbjct:    77 FSAASIKDLLEQVLNRFDHKADIEITLEANPGTVEADKFIGFFKAGVNRLSIGVQSFASD 136

Query:   741 YLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHL 799
              L  LGR HDS QAK A ++A +   ++FNLDL++ LPNQ+L   + DL  AI  +P H+
Sbjct:   137 KLIKLGRIHDSNQAKIAAKLATESGVSSFNLDLMHGLPNQSLDNALDDLKTAISLNPNHI 196

Query:   800 SLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQH 859
             S Y LTIEPNT F   PP  +P +D    +QD+   LL    Y+ YEISAY+K GY+ QH
Sbjct:   197 SWYQLTIEPNTIFHSKPP-KLPVDDILWEIQDQGVKLLNEAGYQQYEISAYAKLGYQCQH 255

Query:   860 NLNYWKFGDYLGNSIAKSKKI 880
             NLNYW++GDYLG       KI
Sbjct:   256 NLNYWQYGDYLGIGCGAHGKI 276

 Score = 123 (48.4 bits), Expect = 4.3e-58, Sum P(2) = 4.3e-58
 Identities = 31/83 (37%), Positives = 46/83 (55%)

Query:   876 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK----R 931
             K  ++++    FEFM+N LRL   FS   F   TG+NIK++   LK A++  L+      
Sbjct:   306 KLSEVDESERPFEFMMNQLRLHSAFSIEQFQTSTGLNIKVVLPLLKEAQQKNLMTCEVID 365

Query:   932 NNKNIKPTSFGRYFLNDLQQIFL 954
             N +    T  G+ +LNDL +IFL
Sbjct:   366 NEEYWLVTQLGQRYLNDLLEIFL 388


>UNIPROTKB|Q8EBY6 [details] [associations]
            symbol:yggW "Radical SAM superfamily protein YggW"
            species:211586 "Shewanella oneidensis MR-1" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
            GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            HOGENOM:HOG000015379 OMA:MPAYEVS RefSeq:NP_718913.1
            ProteinModelPortal:Q8EBY6 GeneID:1171040 KEGG:son:SO_3359
            PATRIC:23526392 ProtClustDB:CLSK907128 Uniprot:Q8EBY6
        Length = 385

 Score = 532 (192.3 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
 Identities = 105/232 (45%), Positives = 145/232 (62%)

Query:   641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXX 700
             G + ++ Y++ALL D+   L ++  RK+HTIFIGGGTPSL     +              
Sbjct:    39 GELPQQAYVDALLADLRQDLHLVQGRKLHTIFIGGGTPSLFDANQIKRILDDANALIPFS 98

Query:   701 XXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
                 IT+EANP T E + F +Y   G+ RLSIG+QSF+   LN+LGR HD  +A+ A + 
Sbjct:    99 DGIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQK 158

Query:   761 AKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLS 819
             A+Q  + +FNLDL++ LPNQ+  E M D++ A   +PPHLS Y LTIEPNT F   PP  
Sbjct:   159 ARQADYLSFNLDLMHGLPNQSFEEAMADIDTAASLNPPHLSWYQLTIEPNTLFHSKPP-Q 217

Query:   820 MPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             +P +++   + ++    L    Y+ YEISAY+K GY+ QHNLNYW+FGDYLG
Sbjct:   218 LPDDEDLWQIYEQGQQKLAALGYEQYEISAYAKPGYQCQHNLNYWQFGDYLG 269

 Score = 89 (36.4 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query:   888 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 947
             E+++N LRL        F +RTG+   +++  ++ A++ GLL  + ++ + T+ G  F+N
Sbjct:   319 EYLMNRLRLMTPIPKQEFEDRTGLPRDVLKDGMEKAKQRGLLTESAEHWQLTNKGHMFVN 378

Query:   948 DL 949
             DL
Sbjct:   379 DL 380


>TIGR_CMR|SO_3359 [details] [associations]
            symbol:SO_3359 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:211586 "Shewanella oneidensis MR-1"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            GO:GO:0006779 GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            HOGENOM:HOG000015379 OMA:MPAYEVS RefSeq:NP_718913.1
            ProteinModelPortal:Q8EBY6 GeneID:1171040 KEGG:son:SO_3359
            PATRIC:23526392 ProtClustDB:CLSK907128 Uniprot:Q8EBY6
        Length = 385

 Score = 532 (192.3 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
 Identities = 105/232 (45%), Positives = 145/232 (62%)

Query:   641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXX 700
             G + ++ Y++ALL D+   L ++  RK+HTIFIGGGTPSL     +              
Sbjct:    39 GELPQQAYVDALLADLRQDLHLVQGRKLHTIFIGGGTPSLFDANQIKRILDDANALIPFS 98

Query:   701 XXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
                 IT+EANP T E + F +Y   G+ RLSIG+QSF+   LN+LGR HD  +A+ A + 
Sbjct:    99 DGIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQK 158

Query:   761 AKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLS 819
             A+Q  + +FNLDL++ LPNQ+  E M D++ A   +PPHLS Y LTIEPNT F   PP  
Sbjct:   159 ARQADYLSFNLDLMHGLPNQSFEEAMADIDTAASLNPPHLSWYQLTIEPNTLFHSKPP-Q 217

Query:   820 MPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             +P +++   + ++    L    Y+ YEISAY+K GY+ QHNLNYW+FGDYLG
Sbjct:   218 LPDDEDLWQIYEQGQQKLAALGYEQYEISAYAKPGYQCQHNLNYWQFGDYLG 269

 Score = 89 (36.4 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query:   888 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 947
             E+++N LRL        F +RTG+   +++  ++ A++ GLL  + ++ + T+ G  F+N
Sbjct:   319 EYLMNRLRLMTPIPKQEFEDRTGLPRDVLKDGMEKAKQRGLLTESAEHWQLTNKGHMFVN 378

Query:   948 DL 949
             DL
Sbjct:   379 DL 380


>UNIPROTKB|Q9KUR0 [details] [associations]
            symbol:VC_0455 "Oxygen-independent coproporphyrinogen III
            oxidase, putative" species:243277 "Vibrio cholerae O1 biovar El Tor
            str. N16961" [GO:0004109 "coproporphyrinogen oxidase activity"
            evidence=ISS] [GO:0006779 "porphyrin-containing compound
            biosynthetic process" evidence=ISS] InterPro:IPR004559
            InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779
            GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            ProtClustDB:PRK05660 OMA:DWIHERT PIR:G82320 RefSeq:NP_230109.1
            ProteinModelPortal:Q9KUR0 DNASU:2615117 GeneID:2615117
            KEGG:vch:VC0455 PATRIC:20080005 Uniprot:Q9KUR0
        Length = 391

 Score = 501 (181.4 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
 Identities = 108/236 (45%), Positives = 143/236 (60%)

Query:   641 GNIDEKKYLEALLIDVELSLPII-LN---RKIHTIFIGGGTPSLISDTGLDYXXXXXXXX 696
             G I E++YL+ALL D++  +    L    R +H+IFIGGGTPSLIS  G+          
Sbjct:    32 GEIPEQEYLDALLQDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAER 91

Query:   697 XXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY 756
                     IT+EANP T E ++F  Y   G+ R+SIG+QSF  + L  LGR H  ++A  
Sbjct:    92 IAFKPEIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVR 151

Query:   757 AIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815
             A ++A Q   N+FNLDL++ LP+QT  + + DL+ AI  +PPHLS Y LTIEPNT F+  
Sbjct:   152 AAQLAHQIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSK 211

Query:   816 PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             PP  +P  D    + +     L +  Y  YEIS YSK GY+ QHNLNYW+FGDYLG
Sbjct:   212 PP-KLPDEDALWDIFELGHQKLSDAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLG 266

 Score = 90 (36.7 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query:   887 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 946
             FEF +N  RL +      F   TG+ I +I   L  A   G L  ++++ + T  G+ FL
Sbjct:   319 FEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSEGYLSEDDQHWQITEKGKLFL 378

Query:   947 NDLQQIFL 954
             NDL + F+
Sbjct:   379 NDLLEAFM 386


>TIGR_CMR|VC_0455 [details] [associations]
            symbol:VC_0455 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:686 "Vibrio cholerae O1 biovar El Tor"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779 GO:GO:0051536
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            ProtClustDB:PRK05660 OMA:DWIHERT PIR:G82320 RefSeq:NP_230109.1
            ProteinModelPortal:Q9KUR0 DNASU:2615117 GeneID:2615117
            KEGG:vch:VC0455 PATRIC:20080005 Uniprot:Q9KUR0
        Length = 391

 Score = 501 (181.4 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
 Identities = 108/236 (45%), Positives = 143/236 (60%)

Query:   641 GNIDEKKYLEALLIDVELSLPII-LN---RKIHTIFIGGGTPSLISDTGLDYXXXXXXXX 696
             G I E++YL+ALL D++  +    L    R +H+IFIGGGTPSLIS  G+          
Sbjct:    32 GEIPEQEYLDALLQDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAER 91

Query:   697 XXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY 756
                     IT+EANP T E ++F  Y   G+ R+SIG+QSF  + L  LGR H  ++A  
Sbjct:    92 IAFKPEIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVR 151

Query:   757 AIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY 815
             A ++A Q   N+FNLDL++ LP+QT  + + DL+ AI  +PPHLS Y LTIEPNT F+  
Sbjct:   152 AAQLAHQIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSK 211

Query:   816 PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             PP  +P  D    + +     L +  Y  YEIS YSK GY+ QHNLNYW+FGDYLG
Sbjct:   212 PP-KLPDEDALWDIFELGHQKLSDAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLG 266

 Score = 90 (36.7 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query:   887 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 946
             FEF +N  RL +      F   TG+ I +I   L  A   G L  ++++ + T  G+ FL
Sbjct:   319 FEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSEGYLSEDDQHWQITEKGKLFL 378

Query:   947 NDLQQIFL 954
             NDL + F+
Sbjct:   379 NDLLEAFM 386


>TIGR_CMR|SO_3467 [details] [associations]
            symbol:SO_3467 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II, putative" species:211586
            "Shewanella oneidensis MR-1" [GO:0003935 "GTP cyclohydrolase II
            activity" evidence=ISS] [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0046872 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 GO:GO:0008686
            TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652
            RefSeq:NP_719016.1 HSSP:P24199 ProteinModelPortal:Q8EBP2 SMR:Q8EBP2
            GeneID:1171143 KEGG:son:SO_3467 PATRIC:23526630 OMA:DVHMALT
            ProtClustDB:CLSK874738 Uniprot:Q8EBP2
        Length = 367

 Score = 561 (202.5 bits), Expect = 1.4e-53, P = 1.4e-53
 Identities = 108/162 (66%), Positives = 127/162 (78%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+IL+++ VTP AINFM+KY RGLIC T+T+  C QL L +M   NN
Sbjct:    19 VILMDDEDRENEGDLILAAEMVTPEAINFMAKYGRGLICQTMTKARCQQLNLPLMVTNNN 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             + F TNFTVSIEAA GVTTGISA DRA T+K A +K AK SD+VQPGHIFPL A+ GGVL
Sbjct:    79 AQFSTNFTVSIEAAEGVTTGISAHDRAVTVKAAVAKDAKASDLVQPGHIFPLMAQDGGVL 138

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNI 425
              R GHTEAGCDL +LAGL PS VI EILN+DGTMAR  +  I
Sbjct:   139 TRAGHTEAGCDLARLAGLEPSGVIVEILNEDGTMARRPDLEI 180


>UNIPROTKB|P52062 [details] [associations]
            symbol:yggW "predicted oxidoreductase" species:83333
            "Escherichia coli K-12" [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0051539 "4 iron, 4
            sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
            cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0006779
            EMBL:U28377 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            eggNOG:COG0635 KO:K02495 InterPro:IPR010723 Pfam:PF06969
            TIGRFAMs:TIGR00539 OMA:CEHNLNY PIR:B65081 RefSeq:NP_417430.1
            RefSeq:YP_491154.1 ProteinModelPortal:P52062 SMR:P52062
            DIP:DIP-12198N IntAct:P52062 MINT:MINT-1261070 PRIDE:P52062
            EnsemblBacteria:EBESCT00000004775 EnsemblBacteria:EBESCT00000014373
            GeneID:12933358 GeneID:947446 KEGG:ecj:Y75_p2885 KEGG:eco:b2955
            PATRIC:32121322 EchoBASE:EB2808 EcoGene:EG12983
            HOGENOM:HOG000015379 ProtClustDB:PRK05660
            BioCyc:EcoCyc:G7531-MONOMER BioCyc:ECOL316407:JW2922-MONOMER
            Genevestigator:P52062 Uniprot:P52062
        Length = 378

 Score = 498 (180.4 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
 Identities = 101/232 (43%), Positives = 142/232 (61%)

Query:   641 GNIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXX 700
             G +    Y++ LL D++  +     R++ TIFIGGGTPSL+S   +              
Sbjct:    32 GEVPHDDYVQHLLNDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLA 91

Query:   701 XXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 760
                 IT+EANP T E ++F  Y   G+NR+SIG+QSF+ + L  LGR H  ++AK A ++
Sbjct:    92 ADAEITMEANPGTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKL 151

Query:   761 AKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLS 819
             A      +FNLDL++ LP+Q+L E + DL  AI+ +PPHLS Y LTIEPNT F   PP+ 
Sbjct:   152 ASGLGLRSFNLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPV- 210

Query:   820 MPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             +P +D    + ++   LL    Y+ YE SAY+K GY+ QHNLNYW+FGDY+G
Sbjct:   211 LPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIG 262

 Score = 83 (34.3 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
 Identities = 25/85 (29%), Positives = 39/85 (45%)

Query:   871 GNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNL-FFERTGINIKIIESKLKNAEKLGLL 929
             G  +   + +E     FEF +N  RL +  +P + F   TG+   +I  +L  A   G L
Sbjct:   293 GRYLESQRDVEATDKPFEFFMNRFRLLEA-APRVEFIAYTGLCEDVIRPQLDEAIAQGYL 351

Query:   930 KRNNKNIKPTSFGRYFLNDLQQIFL 954
                    + T  G+ FLN L ++FL
Sbjct:   352 TECADYWQITEHGKLFLNSLLELFL 376


>UNIPROTKB|Q9KPU3 [details] [associations]
            symbol:VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II" species:243277 "Vibrio cholerae O1
            biovar El Tor str. N16961" [GO:0003935 "GTP cyclohydrolase II
            activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422
            InterPro:IPR000926 InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926
            PIRSF:PIRSF001259 UniPathway:UPA00275 GO:GO:0046872 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 GO:GO:0008686
            TIGRFAMs:TIGR00506 KO:K14652 HSSP:P24199 PIR:D82098
            RefSeq:NP_231900.1 ProteinModelPortal:Q9KPU3 SMR:Q9KPU3
            DNASU:2613191 GeneID:2613191 KEGG:vch:VC2269 PATRIC:20083579
            OMA:LLHWRRD ProtClustDB:CLSK2502553 Uniprot:Q9KPU3
        Length = 369

 Score = 538 (194.4 bits), Expect = 4.6e-51, P = 4.6e-51
 Identities = 100/162 (61%), Positives = 132/162 (81%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+I++++ +TP AINFM+ + RGLIC+TLT++ C +L L+ M + NN
Sbjct:    19 VILMDDEDRENEGDLIMAAEHITPAAINFMATHGRGLICLTLTKERCRRLGLNPMVQDNN 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             + + TNFTVSIEAA GVTTGISA+DRA T++ A +K+AK +D+VQPGHIFPL A+ GGVL
Sbjct:    79 AQYTTNFTVSIEAAEGVTTGISAADRARTVQAAVAKEAKAADLVQPGHIFPLAAQDGGVL 138

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNI 425
              R GHTEAGCDL +LAGL P++VI EILNDDGTMAR  +  +
Sbjct:   139 TRAGHTEAGCDLARLAGLEPASVIVEILNDDGTMARRPDLEV 180


>TIGR_CMR|VC_2269 [details] [associations]
            symbol:VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II" species:686 "Vibrio cholerae O1
            biovar El Tor" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0046872 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 GO:GO:0008686
            TIGRFAMs:TIGR00506 KO:K14652 HSSP:P24199 PIR:D82098
            RefSeq:NP_231900.1 ProteinModelPortal:Q9KPU3 SMR:Q9KPU3
            DNASU:2613191 GeneID:2613191 KEGG:vch:VC2269 PATRIC:20083579
            OMA:LLHWRRD ProtClustDB:CLSK2502553 Uniprot:Q9KPU3
        Length = 369

 Score = 538 (194.4 bits), Expect = 4.6e-51, P = 4.6e-51
 Identities = 100/162 (61%), Positives = 132/162 (81%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+I++++ +TP AINFM+ + RGLIC+TLT++ C +L L+ M + NN
Sbjct:    19 VILMDDEDRENEGDLIMAAEHITPAAINFMATHGRGLICLTLTKERCRRLGLNPMVQDNN 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             + + TNFTVSIEAA GVTTGISA+DRA T++ A +K+AK +D+VQPGHIFPL A+ GGVL
Sbjct:    79 AQYTTNFTVSIEAAEGVTTGISAADRARTVQAAVAKEAKAADLVQPGHIFPLAAQDGGVL 138

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNI 425
              R GHTEAGCDL +LAGL P++VI EILNDDGTMAR  +  +
Sbjct:   139 TRAGHTEAGCDLARLAGLEPASVIVEILNDDGTMARRPDLEV 180


>TAIR|locus:2087408 [details] [associations]
            symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
            "regulation of nitrogen utilization" evidence=ISS] [GO:0008033
            "tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
            [GO:0019243 "methylglyoxal catabolic process to D-lactate"
            evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
            EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
            GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
            IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
            SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
            KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
            PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
            Genevestigator:Q8H128 Uniprot:Q8H128
        Length = 419

 Score = 529 (191.3 bits), Expect = 4.3e-50, P = 4.3e-50
 Identities = 117/285 (41%), Positives = 170/285 (59%)

Query:     5 NSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILG---NKKHCLDFNA 61
             +S Y     S+APMM+ TD H R   R IT+++WLYTEM   + ++    N    L F+ 
Sbjct:    46 SSPYLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSP 105

Query:    62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ-NGFFGAILMTKPLLV 120
             ++HPI  Q+G +  + LAK+AK+   +GYDEINLNCGCPS +V  +G FG  LM KP LV
Sbjct:   106 QQHPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLV 165

Query:   121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKL 179
              + + A+  +  + +TVK RIG+D+ +SYD + DF+  VS+    R FIVH+R A L  +
Sbjct:   166 GEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGI 225

Query:   180 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 238
             +P  NR+IP LKY + Y L +DFP+L   INGGI +  +++  L     GVM+GR AY N
Sbjct:   226 SPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNN 285

Query:   239 PF-LMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGDIILSS 282
             P+  +   D   Y  +P   + TR  ++    E  +  GD +L +
Sbjct:   286 PWQTLGQVDTAVYG-VPSSGL-TRRQVL----EQYQVYGDSVLGT 324


>TIGR_CMR|GSU_1690 [details] [associations]
            symbol:GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II" species:243231 "Geobacter
            sulfurreducens PCA" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=ISS] [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate
            synthase activity" evidence=ISS] [GO:0009231 "riboflavin
            biosynthetic process" evidence=ISS] HAMAP:MF_00179 HAMAP:MF_00180
            HAMAP:MF_01283 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0005525 GO:GO:0046872 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 TIGRFAMs:TIGR00505
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652
            OMA:LRCDCRM HSSP:Q8TG90 RefSeq:NP_952741.1
            ProteinModelPortal:Q74CI3 SMR:Q74CI3 GeneID:2685374
            KEGG:gsu:GSU1690 PATRIC:22026229 ProtClustDB:CLSK828487
            BioCyc:GSUL243231:GH27-1720-MONOMER Uniprot:Q74CI3
        Length = 400

 Score = 515 (186.3 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 95/162 (58%), Positives = 123/162 (75%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+ ++++ VTP AINFM+++ RGLIC+T+T + C  L+L +M   N 
Sbjct:    19 VILVDDEDRENEGDLTMAAEMVTPEAINFMARFGRGLICLTMTTERCDHLQLPLMVSANT 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             SSFGT FTVSIEA  GVTTGISA+DRAHTI  A +  AK  D+ +PGH+FPL+AK GGVL
Sbjct:    79 SSFGTAFTVSIEAKRGVTTGISAADRAHTILTAVADDAKADDLARPGHVFPLRAKPGGVL 138

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNI 425
             +R G TE   DL +LAGL P+ VICEI+NDDGTMAR  +  +
Sbjct:   139 VRAGQTEGSVDLARLAGLKPAGVICEIMNDDGTMARMPQLKV 180


>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
            symbol:PFI0920c "Dihydrouridine synthase,
            putative" species:5833 "Plasmodium falciparum" [GO:0020011
            "apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
            ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
            GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
            HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
        Length = 577

 Score = 497 (180.0 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 113/260 (43%), Positives = 162/260 (62%)

Query:     4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN----KKHCLDF 59
             IN K     I +APM+N+T+RH R   R IT+ + L+TEM     +L N    ++H L F
Sbjct:   191 INEKSTTPFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEH-LGF 249

Query:    60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-GFFGAILMTKPL 118
             +  EHPI  Q+G  +   ++++A ++++ GYDEIN+N GCPS +V N G FGA LM  P 
Sbjct:   250 DNNEHPIVCQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPE 309

Query:   119 LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK 178
              V + +  ++  V+I +TVK R G+D+ +S+DF++ F+ TVSS GC  FIVHAR A+LK 
Sbjct:   310 QVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHARKAWLKG 369

Query:   179 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKN 238
             L+PKQNRKIP L+Y  VY+L K +P L+  +NGGI+T +E    LN   G M   E Y N
Sbjct:   370 LDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALLN---GYM--PENYNN 424

Query:   239 PFLMSNFDLNYYSNLPQYKI 258
                 +N D + +  +  Y I
Sbjct:   425 NNNNNN-DTSNFIQIDNYNI 443

 Score = 43 (20.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 23/96 (23%), Positives = 42/96 (43%)

Query:   442 NIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQA 501
             N IQI  +N+    G++I G     E I    +S   ++    +IP  +   +  TI +A
Sbjct:   434 NFIQIDNYNINPLNGIMI-GRAC-MENIT--VLSQTDKLVYNQDIP--STAYSRRTILEA 487

Query:   502 NSRILTKGEIIIFINHKN---KSLVNLIKNKTPRHR 534
               + L K  +   ++      K ++ ++K   P HR
Sbjct:   488 YKKYLEKNSLFYNLSSSFELLKPVLGILKGM-PGHR 522


>UNIPROTKB|Q8I2W5 [details] [associations]
            symbol:PFI0920c "Dihydrouridine synthase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
            ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
            GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
            HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
        Length = 577

 Score = 497 (180.0 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 113/260 (43%), Positives = 162/260 (62%)

Query:     4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN----KKHCLDF 59
             IN K     I +APM+N+T+RH R   R IT+ + L+TEM     +L N    ++H L F
Sbjct:   191 INEKSTTPFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEH-LGF 249

Query:    60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-GFFGAILMTKPL 118
             +  EHPI  Q+G  +   ++++A ++++ GYDEIN+N GCPS +V N G FGA LM  P 
Sbjct:   250 DNNEHPIVCQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPE 309

Query:   119 LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK 178
              V + +  ++  V+I +TVK R G+D+ +S+DF++ F+ TVSS GC  FIVHAR A+LK 
Sbjct:   310 QVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHARKAWLKG 369

Query:   179 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKN 238
             L+PKQNRKIP L+Y  VY+L K +P L+  +NGGI+T +E    LN   G M   E Y N
Sbjct:   370 LDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALLN---GYM--PENYNN 424

Query:   239 PFLMSNFDLNYYSNLPQYKI 258
                 +N D + +  +  Y I
Sbjct:   425 NNNNNN-DTSNFIQIDNYNI 443

 Score = 43 (20.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 23/96 (23%), Positives = 42/96 (43%)

Query:   442 NIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQA 501
             N IQI  +N+    G++I G     E I    +S   ++    +IP  +   +  TI +A
Sbjct:   434 NFIQIDNYNINPLNGIMI-GRAC-MENIT--VLSQTDKLVYNQDIP--STAYSRRTILEA 487

Query:   502 NSRILTKGEIIIFINHKN---KSLVNLIKNKTPRHR 534
               + L K  +   ++      K ++ ++K   P HR
Sbjct:   488 YKKYLEKNSLFYNLSSSFELLKPVLGILKGM-PGHR 522


>TAIR|locus:2152758 [details] [associations]
            symbol:AT5G47970 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
            "regulation of nitrogen utilization" evidence=ISS] [GO:0008033
            "tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
            [GO:0019243 "methylglyoxal catabolic process to D-lactate"
            evidence=RCA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0009524 EMBL:AB017064
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            HOGENOM:HOG000259834 KO:K05539 EMBL:AB024025
            ProtClustDB:CLSN2686569 EMBL:AY072094 EMBL:AY096579 IPI:IPI00520234
            RefSeq:NP_001078731.1 RefSeq:NP_199608.1 UniGene:At.66758
            ProteinModelPortal:Q9FI41 SMR:Q9FI41 EnsemblPlants:AT5G47970.1
            EnsemblPlants:AT5G47970.2 GeneID:834848 KEGG:ath:AT5G47970
            TAIR:At5g47970 InParanoid:Q9FI41 OMA:KATRLAN PhylomeDB:Q9FI41
            ArrayExpress:Q9FI41 Genevestigator:Q9FI41 Uniprot:Q9FI41
        Length = 387

 Score = 513 (185.6 bits), Expect = 2.4e-48, P = 2.4e-48
 Identities = 110/265 (41%), Positives = 154/265 (58%)

Query:     4 INSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNKKHCLDFN 60
             ++  Y+    SIAPMM  TD H R   R IT+++WLYTEM   + I+    N    L F+
Sbjct:     3 VSEAYSPPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFS 62

Query:    61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-GFFGAILMTKPLL 119
              ++HPI  Q+G    + LAK+ ++   + YDEIN NCGCPS +V   G FGA+LM  P  
Sbjct:    63 PDQHPIVLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKF 122

Query:   120 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKK 178
             V + +  +  +    +TVK RIG+DD +SY+ + DF+  VSS    + FI+H+R A L  
Sbjct:   123 VGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSG 182

Query:   179 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 237
             L+P  NR+IP LKY F + L +DFP+L+  INGGI +  E D  L     GVMLGR  Y 
Sbjct:   183 LSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYY 242

Query:   238 NPF-LMSNFDLNYYSNLPQYKIPTR 261
             NP+ ++ + D   Y + P   I  R
Sbjct:   243 NPWHILGHVDTVVYGS-PSSGITRR 266


>TIGR_CMR|DET_1188 [details] [associations]
            symbol:DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II" species:243164 "Dehalococcoides
            ethenogenes 195" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=ISS] [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate
            synthase activity" evidence=ISS] [GO:0009231 "riboflavin
            biosynthetic process" evidence=ISS] HAMAP:MF_00179 HAMAP:MF_00180
            HAMAP:MF_01283 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0005525 GO:GO:0046872 EMBL:CP000027
            GenomeReviews:CP000027_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 TIGRFAMs:TIGR00505
            eggNOG:COG0108 GO:GO:0008686 TIGRFAMs:TIGR00506
            HOGENOM:HOG000115440 KO:K14652 OMA:LRCDCRM RefSeq:YP_181901.1
            ProteinModelPortal:Q3Z798 SMR:Q3Z798 STRING:Q3Z798 GeneID:3229535
            KEGG:det:DET1188 PATRIC:21609411 ProtClustDB:CLSK837092
            BioCyc:DETH243164:GJNF-1189-MONOMER Uniprot:Q3Z798
        Length = 403

 Score = 495 (179.3 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
 Identities = 97/185 (52%), Positives = 136/185 (73%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D  +RENEGD++++S+ VTP+AINFM+K ARGLIC++LT +   QLK+ MM  +N 
Sbjct:    19 VIVVDDYDRENEGDLVMASEMVTPDAINFMAKNARGLICVSLTAERLEQLKIPMMVTENT 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             S + T FTVS+EA   VTTGISA+DRA T++V     A   DI  PGH+FPL+A++GGVL
Sbjct:    79 SPYSTGFTVSVEARKKVTTGISAADRAATVQVLIDPAATREDIAMPGHMFPLRAREGGVL 138

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNI 443
             +R GHTEA  DLT++AGL PS V+CEI+NDDGTMAR  +      +   A++I +++K+I
Sbjct:   139 VRAGHTEASMDLTRMAGLYPSGVLCEIMNDDGTMARLPQLEAK--AAEWAIKI-ISVKDI 195

Query:   444 IQIKK 448
             I  ++
Sbjct:   196 ISYRR 200

 Score = 38 (18.4 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query:   936 IKPTSFGRYFLNDLQQ 951
             ++P SF R++L   Q+
Sbjct:   376 VEPNSFNRHYLETKQK 391


>TIGR_CMR|CPS_0732 [details] [associations]
            symbol:CPS_0732 "3,4-dihydroxy-2-butanone-4-phosphate
            synthase" species:167879 "Colwellia psychrerythraea 34H"
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISS] InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0046872 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 eggNOG:COG0108
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652
            RefSeq:YP_267482.1 ProteinModelPortal:Q488N2 STRING:Q488N2
            GeneID:3521384 KEGG:cps:CPS_0732 PATRIC:21464779 OMA:SSCEDRQ
            BioCyc:CPSY167879:GI48-819-MONOMER Uniprot:Q488N2
        Length = 369

 Score = 490 (177.5 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
 Identities = 96/163 (58%), Positives = 122/163 (74%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD I++++ VTP AINFM+ + RGLICM ++ + C  LKL +M  KN 
Sbjct:    19 VILMDDEDRENEGDFIMAAEKVTPAAINFMATHGRGLICMPMSREKCETLKLPLMVDKNE 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             + F TNFTVSIEAA GVTTGISA+DRA T+  A++K+A    IVQPGHIFPL AK GGVL
Sbjct:    79 AQFSTNFTVSIEAATGVTTGISAADRATTVLAAANKEATHLSIVQPGHIFPLIAKDGGVL 138

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNIL 426
              R GHTEA  DL ++AG   +AVI EILN+DGTMAR  +  ++
Sbjct:   139 NRAGHTEASVDLARMAGFESAAVIVEILNEDGTMARRSDLEVI 181

 Score = 42 (19.8 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query:   453 IAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQANSRILTKGEI 511
             I +G I   +   F      TI  + Q  +       +  +  +TI+      LTKGEI
Sbjct:   187 IKMGTI--ADLIEFRNATETTIERVSQCKLPTAFGEFDLTVFKDTIDGQAHFALTKGEI 243


>TIGR_CMR|CBU_0647 [details] [associations]
            symbol:CBU_0647 "riboflavin biosynthesis protein RibA"
            species:227377 "Coxiella burnetii RSA 493" [GO:0003935 "GTP
            cyclohydrolase II activity" evidence=ISS] [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00179 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0005525 GO:GO:0046872 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 TIGRFAMs:TIGR00505
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652
            RefSeq:NP_819677.2 PRIDE:Q83DP9 GeneID:1208532 KEGG:cbu:CBU_0647
            PATRIC:17929973 OMA:NIDPFIS ProtClustDB:CLSK2401291
            BioCyc:CBUR227377:GJ7S-644-MONOMER Uniprot:Q83DP9
        Length = 387

 Score = 460 (167.0 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
 Identities = 89/163 (54%), Positives = 116/163 (71%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             II +D E+RENEGD+I++++  TP  INFM+ Y RGLIC+ +      +L + MMT +N 
Sbjct:     2 IILVDDESRENEGDLIIAAEHATPEHINFMTLYGRGLICLPMCSSDFERLNIPMMTSRNG 61

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             S + T F VSIEAA  VTTGISA DRA TI++A  +K+ P DI+ PGH+FPL+A   GVL
Sbjct:    62 SRYETPFGVSIEAAYDVTTGISAHDRARTIQIAIDEKSTPEDIIMPGHMFPLKANDAGVL 121

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNIL 426
              R GHTE   DL +LAGL P+AV+CEILN DG+MAR  +  +L
Sbjct:   122 ARAGHTEGSVDLCRLAGLKPAAVLCEILNKDGSMARLPDLQLL 164

 Score = 41 (19.5 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query:   498 IEQANSRILTKGEIIIFINHKNKS--LVNLIK 527
             +E A   I T+G +++++  + +   L N IK
Sbjct:   258 LEAALDEIATQGGVLLYLRQEGRGIGLANKIK 289


>UNIPROTKB|P0A7J0 [details] [associations]
            symbol:ribB "3,4-dihydroxy-2-butanone 4-phosphate synthase"
            species:83333 "Escherichia coli K-12" [GO:0000287 "magnesium ion
            binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009231 "riboflavin biosynthetic process" evidence=IEA]
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=IEA;IDA] HAMAP:MF_00180 InterPro:IPR000422
            Pfam:PF00926 UniPathway:UPA00275 GO:GO:0005829 GO:GO:0005886
            GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0046872 EMBL:U28377 GO:GO:0009231
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0108 KO:K02858 GO:GO:0008686 TIGRFAMs:TIGR00506
            HOGENOM:HOG000115444 OMA:QMAKLIR EMBL:M64472 EMBL:M77129
            EMBL:X66720 PIR:A38159 RefSeq:NP_417513.1 RefSeq:YP_491233.1
            PDB:1G57 PDB:1G58 PDB:1IEZ PDBsum:1G57 PDBsum:1G58 PDBsum:1IEZ
            ProteinModelPortal:P0A7J0 SMR:P0A7J0 DIP:DIP-35934N IntAct:P0A7J0
            MINT:MINT-1239671 PaxDb:P0A7J0 PRIDE:P0A7J0
            EnsemblBacteria:EBESCT00000001092 EnsemblBacteria:EBESCT00000017487
            GeneID:12931678 GeneID:947526 KEGG:ecj:Y75_p2967 KEGG:eco:b3041
            PATRIC:32121494 EchoBASE:EB0460 EcoGene:EG10465
            ProtClustDB:PRK03353 BioCyc:EcoCyc:DIOHBUTANONEPSYN-MONOMER
            BioCyc:ECOL316407:JW3009-MONOMER
            BioCyc:MetaCyc:DIOHBUTANONEPSYN-MONOMER BRENDA:4.1.99.12
            EvolutionaryTrace:P0A7J0 Genevestigator:P0A7J0 Uniprot:P0A7J0
        Length = 217

 Score = 447 (162.4 bits), Expect = 3.2e-41, P = 3.2e-41
 Identities = 84/159 (52%), Positives = 115/159 (72%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             ++ LD E+RENEGD+I  ++ +T   +    ++  G++C+ +TE    QL L MM + N 
Sbjct:    29 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 88

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             S++GT FTV+IEAA GVTTG+SA+DR  T++ A +  AKPSD+ +PGH+FPL+A+ GGVL
Sbjct:    89 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVL 148

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
              RGGHTEA  DL  LAG  P+ V+CE+ NDDGTMARA E
Sbjct:   149 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE 187


>TIGR_CMR|CHY_1473 [details] [associations]
            symbol:CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II" species:246194 "Carboxydothermus
            hydrogenoformans Z-2901" [GO:0003935 "GTP cyclohydrolase II
            activity" evidence=ISS] [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00179 HAMAP:MF_00180 HAMAP:MF_01283
            InterPro:IPR000422 InterPro:IPR000926 InterPro:IPR016299
            Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259 UniPathway:UPA00275
            GO:GO:0005525 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0009231 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            GO:GO:0003935 TIGRFAMs:TIGR00505 eggNOG:COG0108 GO:GO:0008686
            TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652 OMA:LRCDCRM
            RefSeq:YP_360305.1 ProteinModelPortal:Q3AC29 SMR:Q3AC29
            STRING:Q3AC29 GeneID:3726794 KEGG:chy:CHY_1473 PATRIC:21276077
            BioCyc:CHYD246194:GJCN-1472-MONOMER Uniprot:Q3AC29
        Length = 401

 Score = 435 (158.2 bits), Expect = 6.2e-40, P = 6.2e-40
 Identities = 93/208 (44%), Positives = 135/208 (64%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD++ +++ VTP  INFM+KY RGLIC+ +  K   +L++ +M  +N 
Sbjct:    19 VIVVDDEDRENEGDLVCAAEKVTPEIINFMAKYGRGLICVPMEGKRLDELEIPIMVTQNT 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
                 T FTVS++A +   TGISA++RA TI      +A+P D  +PGHIFPL+AK+GGVL
Sbjct:    79 DPHHTAFTVSVDAVD-THTGISAAERAKTILKLIDPQARPQDFRRPGHIFPLRAKEGGVL 137

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNI 443
              R GHTEA  DL +LAGL P+ VICEI+ DDG MAR  +  +L  +    L+I + + ++
Sbjct:   138 RRAGHTEAAVDLARLAGLYPAGVICEIMRDDGQMARVPD--LLEFAQKHNLKI-ITIASL 194

Query:   444 IQIKKFNV-LIAIGVIIRGETYHFELIA 470
             IQ ++ N  L+  G      T + E +A
Sbjct:   195 IQYRRRNEKLVERGAFAMLPTKYGEFVA 222


>TIGR_CMR|SPO_1761 [details] [associations]
            symbol:SPO_1761 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II, putative" species:246200 "Ruegeria
            pomeroyi DSS-3" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=ISS] [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate
            synthase activity" evidence=ISS] [GO:0009231 "riboflavin
            biosynthetic process" evidence=ISS] HAMAP:MF_00180
            InterPro:IPR000422 InterPro:IPR000926 InterPro:IPR016299
            Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259 UniPathway:UPA00275
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0009231
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652
            RefSeq:YP_166999.1 ProteinModelPortal:Q5LSK6 GeneID:3193366
            KEGG:sil:SPO1761 PATRIC:23376845 OMA:RTHALHE ProtClustDB:CLSK933632
            Uniprot:Q5LSK6
        Length = 373

 Score = 433 (157.5 bits), Expect = 1.0e-39, P = 1.0e-39
 Identities = 84/155 (54%), Positives = 113/155 (72%)

Query:   265 INLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNS 324
             I +D E+RENEGD+ ++++F    AINFM+ + RGLIC+ +T     +L L MM   N+S
Sbjct:    34 ILVDHEDRENEGDLCIAAEFADAAAINFMATHGRGLICLPMTADRIDRLGLPMMAVNNSS 93

Query:   325 SFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLI 384
                T FTVSIEA  GV+TGISA+DRA T+  A +++   + +  PGHIFPL+AK+GGVL+
Sbjct:    94 RHETAFTVSIEAREGVSTGISAADRALTVATAINEQNTMASLATPGHIFPLRAKRGGVLV 153

Query:   385 RGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
             R GHTEA  D+++LAGL PS VICEI+ +DGTMAR
Sbjct:   154 RAGHTEAAVDISRLAGLNPSGVICEIMKEDGTMAR 188


>TIGR_CMR|BA_4333 [details] [associations]
            symbol:BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase/GTP cyclohydrolase II" species:198094 "Bacillus anthracis
            str. Ames" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=ISS] [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate
            synthase activity" evidence=ISS] [GO:0009231 "riboflavin
            biosynthetic process" evidence=ISS] HAMAP:MF_01283
            InterPro:IPR000422 InterPro:IPR000926 InterPro:IPR016299
            Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259 UniPathway:UPA00275
            GO:GO:0005525 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 HSSP:P0A7I7 GO:GO:0003935
            TIGRFAMs:TIGR00505 eggNOG:COG0108 GO:GO:0008686 TIGRFAMs:TIGR00506
            HOGENOM:HOG000115440 KO:K14652 OMA:LRCDCRM RefSeq:NP_846566.1
            RefSeq:YP_020979.1 RefSeq:YP_030270.1 ProteinModelPortal:Q81MB6
            SMR:Q81MB6 IntAct:Q81MB6 DNASU:1087528
            EnsemblBacteria:EBBACT00000011097 EnsemblBacteria:EBBACT00000016348
            EnsemblBacteria:EBBACT00000022845 GeneID:1087528 GeneID:2818522
            GeneID:2850961 KEGG:ban:BA_4333 KEGG:bar:GBAA_4333 KEGG:bat:BAS4020
            ProtClustDB:PRK09311 BioCyc:BANT260799:GJAJ-4077-MONOMER
            BioCyc:BANT261594:GJ7F-4217-MONOMER Uniprot:Q81MB6
        Length = 397

 Score = 412 (150.1 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 82/159 (51%), Positives = 109/159 (68%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I  D ENRENEGD I  ++++TP  INFM  + RGL+C+ +TE +  +L+L+ M   N 
Sbjct:    18 VIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVSHNT 77

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
              S  T FTVSI+  +  TTGISA +RA TI+   +  +K +D  +PGHIFPL AK+GGVL
Sbjct:    78 DSHHTAFTVSIDHVS-TTTGISAHERATTIQQLLNPASKGADFNRPGHIFPLIAKEGGVL 136

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
              R GHTEA  DL +L G  P+ VICEI+N+DGTMAR  +
Sbjct:   137 RRAGHTEAAVDLAQLCGAEPAGVICEIINEDGTMARVPD 175

 Score = 46 (21.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query:   768 FNLDLI-YALPNQTLSELMLDLNYAIQYSPPHLS-L--YSLTIEPNTYFFKYPPLSMPSN 823
             F  DL  Y +  Q L +L L     +  +P  ++ L  Y LT+          PL MP+ 
Sbjct:   324 FPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLTVTERV------PLQMPAK 377

Query:   824 DENAV-MQDKITSL 836
             +EN   +Q K+  L
Sbjct:   378 EENKTYLQTKVNKL 391


>TIGR_CMR|APH_1332 [details] [associations]
            symbol:APH_1332 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase" species:212042 "Anaplasma phagocytophilum HZ" [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] InterPro:IPR000422 Pfam:PF00926 UniPathway:UPA00275
            GO:GO:0046872 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009231
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0108 KO:K02858 GO:GO:0008686 TIGRFAMs:TIGR00506
            HOGENOM:HOG000115444 OMA:QMAKLIR ProtClustDB:CLSK749530
            RefSeq:YP_505837.1 ProteinModelPortal:Q2GIG4 STRING:Q2GIG4
            GeneID:3930706 KEGG:aph:APH_1332 PATRIC:20951468
            BioCyc:APHA212042:GHPM-1332-MONOMER Uniprot:Q2GIG4
        Length = 209

 Score = 424 (154.3 bits), Expect = 9.5e-39, P = 9.5e-39
 Identities = 82/156 (52%), Positives = 108/156 (69%)

Query:   267 LDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 326
             LD E RENEGD++  +D V+P AIN M +Y  G++C+  +E H  +L L +M+++N +  
Sbjct:    29 LDDEERENEGDLVALADRVSPEAINMMIRYGSGIVCLAFSEYHAKKLGLGLMSRRNANDG 88

Query:   327 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRG 386
                F  SI+A +G+TTG+SASDRA TI  A S  +   DIV PGH+FP+ A  GGVL RG
Sbjct:    89 CPAFAESIDARHGITTGVSASDRAATILKAVSDDSSADDIVTPGHVFPIVANPGGVLKRG 148

Query:   387 GHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQE 422
             GHTEAG D+ KLAG   +AVICE++N DGTMAR  E
Sbjct:   149 GHTEAGVDIAKLAGAAHAAVICELMNPDGTMARLPE 184


>TIGR_CMR|SO_0142 [details] [associations]
            symbol:SO_0142 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase" species:211586 "Shewanella oneidensis MR-1" [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422 Pfam:PF00926
            UniPathway:UPA00275 GO:GO:0046872 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0108 KO:K02858
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115444 OMA:QMAKLIR
            ProtClustDB:PRK03353 RefSeq:NP_715784.1 ProteinModelPortal:Q8EKF2
            SMR:Q8EKF2 GeneID:1168036 KEGG:son:SO_0142 PATRIC:23519971
            Uniprot:Q8EKF2
        Length = 217

 Score = 418 (152.2 bits), Expect = 4.2e-38, P = 4.2e-38
 Identities = 88/197 (44%), Positives = 131/197 (66%)

Query:   262 IDIINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKK 321
             + ++ +D E+RENEGD+I +++ +T   +  + +   G++C+ L ++    L L  M + 
Sbjct:    27 LGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIRECSGIVCLCLPDEKVKALALPPMVEN 86

Query:   322 NNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGG 381
             N+S +GT FTVSIEA  GVTTG+SA+DR  TIK A +  AKPSD+ +PGH++PL+A+ GG
Sbjct:    87 NSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKTAIADHAKPSDLARPGHVYPLRAQPGG 146

Query:   382 VLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALE-IP-LA 439
             VL R GHTE   DL +LAGL P+ V+CE+ N DGTMAR  E     I   GAL  +P L 
Sbjct:   147 VLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDGTMARLPE-----IIAFGALHNMPVLT 201

Query:   440 LKNIIQIKKFNVLIAIG 456
             +++I+  +K ++L  +G
Sbjct:   202 IEDIVVYRK-SLLANVG 217


>UNIPROTKB|Q9KKP2 [details] [associations]
            symbol:ribB "3,4-dihydroxy-2-butanone 4-phosphate synthase"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422
            Pfam:PF00926 UniPathway:UPA00275 GO:GO:0046872 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0108 KO:K02858
            GO:GO:0008686 TIGRFAMs:TIGR00506 OMA:QMAKLIR PIR:B82384
            RefSeq:NP_233442.1 ProteinModelPortal:Q9KKP2 SMR:Q9KKP2
            DNASU:2612048 GeneID:2612048 KEGG:vch:VCA1060 PATRIC:20086638
            ProtClustDB:PRK00910 Uniprot:Q9KKP2
        Length = 218

 Score = 417 (151.9 bits), Expect = 5.4e-38, P = 5.4e-38
 Identities = 85/192 (44%), Positives = 128/192 (66%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             ++ LD E+RENEGDII + + +T   +  M +   G++C+ LTE    +L L  M   NN
Sbjct:    30 VLLLDDEDRENEGDIIYAVESLTTAQMALMIRECSGIVCLCLTEAQADRLALPPMVVNNN 89

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             S+  T FTVSIEA +GVTTG+SA DR  TIK A++ +AKP D+ +PGH+FPL+A+ GGVL
Sbjct:    90 SANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVL 149

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNI 443
              R GHTE   DL ++AGL P+ V+CE+ N DG+MA+  E  I+       + + L ++++
Sbjct:   150 ARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGSMAKTPE--IIEFGKLHNMPV-LTIEDM 206

Query:   444 IQIK-KFNVLIA 454
             +Q + +F++ +A
Sbjct:   207 VQYRIQFDLKLA 218


>TIGR_CMR|VC_A1060 [details] [associations]
            symbol:VC_A1060 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase" species:686 "Vibrio cholerae O1 biovar El Tor"
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422
            Pfam:PF00926 UniPathway:UPA00275 GO:GO:0046872 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0108 KO:K02858
            GO:GO:0008686 TIGRFAMs:TIGR00506 OMA:QMAKLIR PIR:B82384
            RefSeq:NP_233442.1 ProteinModelPortal:Q9KKP2 SMR:Q9KKP2
            DNASU:2612048 GeneID:2612048 KEGG:vch:VCA1060 PATRIC:20086638
            ProtClustDB:PRK00910 Uniprot:Q9KKP2
        Length = 218

 Score = 417 (151.9 bits), Expect = 5.4e-38, P = 5.4e-38
 Identities = 85/192 (44%), Positives = 128/192 (66%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             ++ LD E+RENEGDII + + +T   +  M +   G++C+ LTE    +L L  M   NN
Sbjct:    30 VLLLDDEDRENEGDIIYAVESLTTAQMALMIRECSGIVCLCLTEAQADRLALPPMVVNNN 89

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             S+  T FTVSIEA +GVTTG+SA DR  TIK A++ +AKP D+ +PGH+FPL+A+ GGVL
Sbjct:    90 SANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVL 149

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNI 443
              R GHTE   DL ++AGL P+ V+CE+ N DG+MA+  E  I+       + + L ++++
Sbjct:   150 ARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGSMAKTPE--IIEFGKLHNMPV-LTIEDM 206

Query:   444 IQIK-KFNVLIA 454
             +Q + +F++ +A
Sbjct:   207 VQYRIQFDLKLA 218


>TAIR|locus:2041253 [details] [associations]
            symbol:RIBA2 "homolog of ribA 2" species:3702
            "Arabidopsis thaliana" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=IEA;ISS] [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate
            synthase activity" evidence=IEA;ISS] [GO:0009231 "riboflavin
            biosynthetic process" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            HAMAP:MF_00180 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009231
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935
            eggNOG:COG0108 GO:GO:0008686 TIGRFAMs:TIGR00506
            HOGENOM:HOG000115440 KO:K14652 ProtClustDB:PLN02831 EMBL:BT011627
            EMBL:BT012273 EMBL:AK228961 IPI:IPI00524240 RefSeq:NP_179831.2
            UniGene:At.39435 HSSP:Q8TG90 ProteinModelPortal:Q6NLQ7 SMR:Q6NLQ7
            STRING:Q6NLQ7 PaxDb:Q6NLQ7 PRIDE:Q6NLQ7 EnsemblPlants:AT2G22450.1
            GeneID:816777 KEGG:ath:AT2G22450 TAIR:At2g22450 InParanoid:Q6NLQ7
            OMA:VSVDFKH PhylomeDB:Q6NLQ7 Genevestigator:Q6NLQ7 Uniprot:Q6NLQ7
        Length = 476

 Score = 417 (151.9 bits), Expect = 5.4e-38, P = 5.4e-38
 Identities = 84/176 (47%), Positives = 123/176 (69%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMM-TKKN 322
             ++ +D E+RENEGD+I+++   TP A+ F+ K+  G++C+++  +   +L+L +M T+K+
Sbjct:   122 VVVVDDEDRENEGDLIMAASLATPEAMAFVVKHGTGIVCVSMKGEDLERLELPLMVTRKD 181

Query:   323 NSS-FGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGG 381
             N     T FTVS++A  G +TG+SA DRA TI   +SK +KP D  +PGHIFPL+ ++GG
Sbjct:   182 NEEKLRTAFTVSVDAKKGTSTGVSARDRAQTILTLASKDSKPEDFNRPGHIFPLRYREGG 241

Query:   382 VLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQEKNILHISV 430
             VL R GHTEA  DLT LAGL P +V+CEI++DDG+MAR       AQE N+  IS+
Sbjct:   242 VLKRAGHTEASVDLTVLAGLEPVSVLCEIVDDDGSMARLPRLRQFAQENNLKLISI 297


>TAIR|locus:2173373 [details] [associations]
            symbol:GCH "GTP cyclohydrolase II" species:3702
            "Arabidopsis thaliana" [GO:0003935 "GTP cyclohydrolase II activity"
            evidence=IEA;IGI;ISS] [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=IEA;IGI;ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=IEA;IGI;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009570 "chloroplast
            stroma" evidence=IDA] [GO:0048767 "root hair elongation"
            evidence=RCA] InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 UniPathway:UPA00275
            GO:GO:0005525 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570
            GO:GO:0016020 GO:GO:0046872 EMBL:AB008268 GO:GO:0009231
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935
            TIGRFAMs:TIGR00505 eggNOG:COG0108 GO:GO:0008686 TIGRFAMs:TIGR00506
            EMBL:AJ000053 EMBL:D45165 IPI:IPI00522822 PIR:JC4209
            RefSeq:NP_201235.4 UniGene:At.49217 ProteinModelPortal:P47924
            SMR:P47924 STRING:P47924 PaxDb:P47924 PRIDE:P47924
            EnsemblPlants:AT5G64300.1 GeneID:836551 KEGG:ath:AT5G64300
            GeneFarm:2299 TAIR:At5g64300 HOGENOM:HOG000115440 InParanoid:P47924
            KO:K14652 OMA:LRCDCRM PhylomeDB:P47924 ProtClustDB:PLN02831
            BioCyc:ARA:AT5G64300-MONOMER BioCyc:MetaCyc:AT5G64300-MONOMER
            Genevestigator:P47924 GermOnline:AT5G64300 Uniprot:P47924
        Length = 543

 Score = 405 (147.6 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 75/158 (47%), Positives = 112/158 (70%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMT--KK 321
             ++ +D E+RENEGD+++++   TP A+ F+ ++  G++C+++ E    +L L +M   K+
Sbjct:   144 VVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKE 203

Query:   322 NNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGG 381
             N     T FTV+++A +G TTG+SA DRA TI   +S+ +KP D  +PGHIFPL+ ++GG
Sbjct:   204 NEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGG 263

Query:   382 VLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
             VL R GHTEA  DLT LAGL P  V+CEI++DDG+MAR
Sbjct:   264 VLKRAGHTEASVDLTVLAGLDPVGVLCEIVDDDGSMAR 301


>TIGR_CMR|ECH_0134 [details] [associations]
            symbol:ECH_0134 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISS] InterPro:IPR000422 Pfam:PF00926
            UniPathway:UPA00275 GO:GO:0046872 EMBL:CP000236
            GenomeReviews:CP000236_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0108 KO:K02858
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115444 OMA:QMAKLIR
            RefSeq:YP_506962.1 ProteinModelPortal:Q2GHX1 STRING:Q2GHX1
            GeneID:3927371 KEGG:ech:ECH_0134 PATRIC:20575809
            ProtClustDB:CLSK749530 BioCyc:ECHA205920:GJNR-134-MONOMER
            Uniprot:Q2GHX1
        Length = 211

 Score = 402 (146.6 bits), Expect = 2.2e-36, P = 2.2e-36
 Identities = 79/186 (42%), Positives = 120/186 (64%)

Query:   265 INLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNS 324
             I +D E RENEGD+++ ++ VT   INFM  +  G++C+++TE    +L L+ + K++ +
Sbjct:    29 ILIDDEQRENEGDLVVLAEKVTSGVINFMITHGSGIVCLSITEDLMHKLGLEFIPKRHVN 88

Query:   325 SFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLI 384
                 +F  SI+A  G+TTG+SA DRAHTI    +K     D V PGHIFP+ +KKGGVL 
Sbjct:    89 CNSASFATSIDARYGITTGVSAHDRAHTILTVVNKNVTEDDFVTPGHIFPIVSKKGGVLE 148

Query:   385 RGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNILHISVPGALEIPLALKNII 444
             R GHTEA  ++ ++AGL P AV+CE++N DGTM+R  +  I+  S    +++  ++  +I
Sbjct:   149 RSGHTEASVEIARIAGLAPVAVVCELMNPDGTMSRMPD--IIEFSQRYNIKVT-SIDKLI 205

Query:   445 QIKKFN 450
             Q  K N
Sbjct:   206 QYVKAN 211


>TIGR_CMR|SPO_0006 [details] [associations]
            symbol:SPO_0006 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:246200 "Ruegeria pomeroyi DSS-3"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006779 GO:GO:0051536
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            InterPro:IPR010723 Pfam:PF06969 HOGENOM:HOG000015381
            TIGRFAMs:TIGR00539 OMA:MPAYEVS RefSeq:YP_165279.1
            ProteinModelPortal:Q5LWF8 GeneID:3196529 KEGG:sil:SPO0006
            PATRIC:23373241 ProtClustDB:PRK09057 Uniprot:Q5LWF8
        Length = 385

 Score = 371 (135.7 bits), Expect = 9.4e-36, Sum P(2) = 9.4e-36
 Identities = 84/233 (36%), Positives = 131/233 (56%)

Query:   643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             ID+K ++ A + ++E     +  R ++TIF GGGTPSL+    +                
Sbjct:    36 IDQKAWVRAYVSELERCAAELPGRVLNTIFFGGGTPSLMMPETVAAVIETVRRLWPTSND 95

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               ITLEANP + E  +F +Y   G+NR+S+G+Q+ N++ L+ LGR H   +A+ A +IA+
Sbjct:    96 MEITLEANPGSVEAGRFAAYRDGGVNRISMGVQALNDRDLHRLGRIHSVAEARAAFDIAR 155

Query:   763 QYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF-KYPP---L 818
             + F   + DLIYA  +QT      +LN A+  +  HLSLY LTIE  T F  +Y      
Sbjct:   156 RCFERVSFDLIYARQDQTPEAWRAELNEALAMAVDHLSLYQLTIEDGTAFGDRYARGKLR 215

Query:   819 SMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
              +P++D+ A M      +   +    YE+S +++ G ES+HNL YW++GDY+G
Sbjct:   216 GLPADDDAADMYLITQEVCATHGLPAYEVSNHARPGSESRHNLIYWRYGDYVG 268

 Score = 52 (23.4 bits), Expect = 9.4e-36, Sum P(2) = 9.4e-36
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query:   867 GDYLGNSIAK-SKKIEKKCLIF-----EFMLNALRLKDGFSPNLFFERTGINIKIIESKL 920
             G +LG ++AK S ++ +  L       E+++  LR+ +G   + + E       +  ++L
Sbjct:   293 GAWLG-AVAKGSGELSRVALSLQDQADEYLMMGLRIAEGLDIHRY-EALSPQ-PLNRNRL 349

Query:   921 KNAEKLGLLKRNNKNIKPTSFGRYFLN 947
              +  +LG+++     +K T+ GR  LN
Sbjct:   350 AHLTELGMIEIEGTRLKATAQGRAVLN 376


>TIGR_CMR|CJE_0675 [details] [associations]
            symbol:CJE_0675 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase" species:195099 "Campylobacter jejuni RM1221" [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00180 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0000287 GO:GO:0030145 EMBL:CP000025
            GenomeReviews:CP000025_GR GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 eggNOG:COG0108
            GO:GO:0008686 TIGRFAMs:TIGR00506 HOGENOM:HOG000115440 KO:K14652
            OMA:VSVDFKH RefSeq:YP_178687.1 ProteinModelPortal:Q5HVJ8
            STRING:Q5HVJ8 GeneID:3232003 KEGG:cjr:CJE0675 PATRIC:20043078
            ProtClustDB:PRK09314 BioCyc:CJEJ195099:GJC0-692-MONOMER
            Uniprot:Q5HVJ8
        Length = 339

 Score = 396 (144.5 bits), Expect = 9.7e-36, P = 9.7e-36
 Identities = 88/210 (41%), Positives = 132/210 (62%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             ++ +D+E+RENEGD+I  + F T   +NFM K ARG++C+ L E    + +L +M  KN 
Sbjct:    19 LVMVDAEDRENEGDLIFPAQFSTQEKVNFMIKEARGVVCVALDETLAKKFELPLMVPKNT 78

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
             S+  T FT++++A +  TTG+SA +R  TI++ +   AK SD V+PGHI PL AKKGGVL
Sbjct:    79 SNHETAFTITVDAKDA-TTGVSAYERNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVL 137

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKNIL---H----ISVPGALEI 436
              R GHTE   DL KLAGL  + VICEI+ D+G MAR ++  I    H    I+V   +E 
Sbjct:   138 ERTGHTEGTVDLCKLAGLKGACVICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEY 197

Query:   437 PLALKNIIQIKKFNVLIAIGVIIRGETYHF 466
              L  +++I++++ +  +  G   + E + F
Sbjct:   198 RLKHESLIKLEEKSQSVLAG--FKAEKFIF 225


>TIGR_CMR|DET_0858 [details] [associations]
            symbol:DET_0858 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            GO:GO:0006779 GO:GO:0051536 EMBL:CP000027 GenomeReviews:CP000027_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
            KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            HOGENOM:HOG000015380 OMA:MPAYEVS RefSeq:YP_181584.1
            ProteinModelPortal:Q3Z865 STRING:Q3Z865 GeneID:3229839
            KEGG:det:DET0858 PATRIC:21608775 ProtClustDB:CLSK837244
            BioCyc:DETH243164:GJNF-859-MONOMER Uniprot:Q3Z865
        Length = 378

 Score = 368 (134.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
 Identities = 83/217 (38%), Positives = 122/217 (56%)

Query:   669 HTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGIN 728
             H+++ GGGTPSL+S + +                  IT EANP T  +        +GIN
Sbjct:    55 HSLYFGGGTPSLLSPSQVADILAGIRTAAHLLPDAEITFEANPGTLALPYLPEIKSLGIN 114

Query:   729 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 787
             RLS+GIQSF+   L +LGR H++ +A+ A + A+   FNN +LDLIY LP+ ++S    +
Sbjct:   115 RLSLGIQSFSGAELTMLGRLHNAAKARQAYKQARAAGFNNISLDLIYGLPDSSVSSFKKN 174

Query:   788 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM-PS-NDENAVMQDKITS-LLKNNYYKN 844
             L  A+  +P H+SLY LT+E +T  ++     + P  N E A  Q +    +L    Y++
Sbjct:   175 LAEALALAPEHISLYGLTLEEDTPMYRQVQEGLLPEINAETAADQYQAAEDILAKAGYRH 234

Query:   845 YEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKIE 881
             YEIS ++K GYES+HNL YW+   YLG   A    +E
Sbjct:   235 YEISNWAKPGYESRHNLTYWQNRPYLGLGAAGHSFLE 271

 Score = 48 (22.0 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query:   861 LNYWKFGDYLGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINI--KIIES 918
             LN W+  D L  + +++  ++ +  + E ++  LRL  G +      R G ++  K    
Sbjct:   285 LNRWQ-ND-LPPTPSENIYLDLENQLAETIILGLRLDKGITAEDIENRFGQHVMDKYFPV 342

Query:   919 KLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 954
              ++    LGLL++++  I  T  GR   N++   FL
Sbjct:   343 -IQECTGLGLLEKSDGGISLTPRGRLLSNEVFWRFL 377


>UNIPROTKB|P0A5V0 [details] [associations]
            symbol:ribBA "Riboflavin biosynthesis protein RibBA"
            species:1773 "Mycobacterium tuberculosis" [GO:0005576
            "extracellular region" evidence=IDA] [GO:0040007 "growth"
            evidence=IMP] HAMAP:MF_01283 InterPro:IPR000422 InterPro:IPR000926
            InterPro:IPR016299 Pfam:PF00925 Pfam:PF00926 PIRSF:PIRSF001259
            UniPathway:UPA00275 GO:GO:0005525 GO:GO:0040007 GO:GO:0005576
            EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
            GO:GO:0046872 EMBL:BX842576 GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0003935 TIGRFAMs:TIGR00505
            eggNOG:COG0108 GO:GO:0008686 TIGRFAMs:TIGR00506
            HOGENOM:HOG000115440 KO:K14652 OMA:LRCDCRM ProtClustDB:PRK09311
            EMBL:AF001929 PIR:D70902 RefSeq:NP_215931.1 RefSeq:NP_335909.1
            RefSeq:YP_006514795.1 ProteinModelPortal:P0A5V0 SMR:P0A5V0
            PRIDE:P0A5V0 EnsemblBacteria:EBMYCT00000002121
            EnsemblBacteria:EBMYCT00000070900 GeneID:13320004 GeneID:886694
            GeneID:924514 KEGG:mtc:MT1458 KEGG:mtu:Rv1415 KEGG:mtv:RVBD_1415
            PATRIC:18124976 TubercuList:Rv1415 Uniprot:P0A5V0
        Length = 425

 Score = 375 (137.1 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 73/164 (44%), Positives = 106/164 (64%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+I +++  TP  + FM +Y  G +C+ L    C +L L  M   N 
Sbjct:    20 VIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQ 79

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
                GT +TV+++A NG+ TGISASDRA T+++ +   +   D  +PGH+ PL+AK GGVL
Sbjct:    80 DKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVL 139

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARAQEKNI 425
              R GHTEA  DL ++AGL P+  ICEI++  D+G+MA   E  +
Sbjct:   140 RRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRV 183


>TIGR_CMR|BA_4542 [details] [associations]
            symbol:BA_4542 "oxygen-independent coproporphyrinogen III
            oxidase" species:198094 "Bacillus anthracis str. Ames" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:AE016879
            EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
            GO:GO:0006779 GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404
            GO:GO:0004109 KO:K02495 InterPro:IPR010723 Pfam:PF06969
            TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 OMA:MPAYEVS
            RefSeq:NP_846765.1 RefSeq:YP_021188.1 ProteinModelPortal:Q81LR9
            EnsemblBacteria:EBBACT00000008456 EnsemblBacteria:EBBACT00000017627
            GeneID:1088276 GeneID:2819000 KEGG:ban:BA_4542 KEGG:bar:GBAA_4542
            PATRIC:18786672 ProtClustDB:PRK08599
            BioCyc:BANT261594:GJ7F-4418-MONOMER Uniprot:Q81LR9
        Length = 378

 Score = 362 (132.5 bits), Expect = 4.3e-32, P = 4.3e-32
 Identities = 96/315 (30%), Positives = 150/315 (47%)

Query:   647 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-DTGLDYXXXXXXXXXXXXXXXSI 705
             +YLE  +I+    +P      + TIF+GGGTP+ ++ +                     +
Sbjct:    35 EYLEKEIINTVQKVPF---DSMKTIFVGGGTPTALNMEQTKKLLDIINRRLRPFAPNCEL 91

Query:   706 TLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY- 764
             T EANP     EK +     G+NR+S G+Q+F ++ L  +GR H  + A  AI  A++  
Sbjct:    92 TFEANPGDLPKEKLNVLLEGGVNRISFGVQTFRDELLEKIGRKHTREDAFVAIREAQEVG 151

Query:   765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMP 821
             F N N+D+IYALP QT+ ++   L+ A      H S YSL +EP T F+       L +P
Sbjct:   152 FKNINVDIIYALPGQTIEDVKETLDIAFTLGVQHFSAYSLIVEPKTVFYNLMNKGKLRLP 211

Query:   822 SNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKIE 881
               D  A M + +   ++ + Y  YEIS +SK   ES+HNL YW   +Y G        + 
Sbjct:   212 GEDHEAKMYEMVMDEMERHGYTQYEISNFSKGDNESRHNLTYWNNEEYYGFGAGAHSYVN 271

Query:   882 KKCLIFEFMLNALRLKDGFSPNLFFERTG---INIKIIESKLKNAEKLGLLKRNNKNIKP 938
                   E + N   LK  F+     + TG   +++ ++  K K  E+L L  R  K +  
Sbjct:   272 G-----ERIQNVGPLKQYFNK---IDETGFPYLDVHVVTEKEKMEEELFLGLRKTKGVSK 323

Query:   939 TSFGRYFLNDLQQIF 953
              +F   F  ++ Q+F
Sbjct:   324 MAFRNKFNVEMNQVF 338


>CGD|CAL0003526 [details] [associations]
            symbol:RIB3 species:5476 "Candida albicans" [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=IDA] [GO:0009231 "riboflavin biosynthetic process"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005758 "mitochondrial intermembrane
            space" evidence=IEA] [GO:0009060 "aerobic respiration"
            evidence=IEA] InterPro:IPR000422 Pfam:PF00926 UniPathway:UPA00275
            GO:GO:0046872 GO:GO:0009231 Gene3D:3.90.870.10 InterPro:IPR017945
            SUPFAM:SSF55821 EMBL:AACQ01000070 EMBL:AACQ01000071
            RefSeq:XP_716297.1 RefSeq:XP_716359.1 PDB:1TKS PDB:1TKU PDB:2RIS
            PDB:2RIU PDBsum:1TKS PDBsum:1TKU PDBsum:2RIS PDBsum:2RIU
            ProteinModelPortal:Q5A3V6 SMR:Q5A3V6 STRING:Q5A3V6 GeneID:3641955
            GeneID:3642062 KEGG:cal:CaO19.12693 KEGG:cal:CaO19.5228
            eggNOG:COG0108 KO:K02858 EvolutionaryTrace:Q5A3V6 GO:GO:0008686
            TIGRFAMs:TIGR00506 Uniprot:Q5A3V6
        Length = 204

 Score = 354 (129.7 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 68/160 (42%), Positives = 104/160 (65%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+I++++ +T   + F+ +Y+ G +C+ L+E+   QL+L  M    +
Sbjct:    21 LIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRS 80

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
                GT +T++ + A G TTGISA DRA T +  ++  +KP D ++PGHI PL+A  G + 
Sbjct:    81 DRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLK 140

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMARAQE 422
              R GHTEA   L+ LAGL P+ VICE++ D DG M R  +
Sbjct:   141 KRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDD 180


>UNIPROTKB|Q5A3V6 [details] [associations]
            symbol:RIB3 "3,4-dihydroxy-2-butanone 4-phosphate synthase"
            species:237561 "Candida albicans SC5314" [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=IDA] [GO:0009231 "riboflavin biosynthetic process"
            evidence=IDA] InterPro:IPR000422 Pfam:PF00926 UniPathway:UPA00275
            GO:GO:0046872 GO:GO:0009231 Gene3D:3.90.870.10 InterPro:IPR017945
            SUPFAM:SSF55821 EMBL:AACQ01000070 EMBL:AACQ01000071
            RefSeq:XP_716297.1 RefSeq:XP_716359.1 PDB:1TKS PDB:1TKU PDB:2RIS
            PDB:2RIU PDBsum:1TKS PDBsum:1TKU PDBsum:2RIS PDBsum:2RIU
            ProteinModelPortal:Q5A3V6 SMR:Q5A3V6 STRING:Q5A3V6 GeneID:3641955
            GeneID:3642062 KEGG:cal:CaO19.12693 KEGG:cal:CaO19.5228
            eggNOG:COG0108 KO:K02858 EvolutionaryTrace:Q5A3V6 GO:GO:0008686
            TIGRFAMs:TIGR00506 Uniprot:Q5A3V6
        Length = 204

 Score = 354 (129.7 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 68/160 (42%), Positives = 104/160 (65%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D E+RENEGD+I++++ +T   + F+ +Y+ G +C+ L+E+   QL+L  M    +
Sbjct:    21 LIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRS 80

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
                GT +T++ + A G TTGISA DRA T +  ++  +KP D ++PGHI PL+A  G + 
Sbjct:    81 DRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLK 140

Query:   384 IRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMARAQE 422
              R GHTEA   L+ LAGL P+ VICE++ D DG M R  +
Sbjct:   141 KRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDD 180


>TIGR_CMR|GSU_0030 [details] [associations]
            symbol:GSU_0030 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            GO:GO:0006779 GO:GO:0051536 EMBL:AE017180 GenomeReviews:AE017180_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            HOGENOM:HOG000015380 OMA:MPAYEVS RefSeq:NP_951092.1
            ProteinModelPortal:Q74H62 GeneID:2685648 KEGG:gsu:GSU0030
            PATRIC:22022797 ProtClustDB:CLSK827599
            BioCyc:GSUL243231:GH27-50-MONOMER Uniprot:Q74H62
        Length = 385

 Score = 346 (126.9 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 72/206 (34%), Positives = 118/206 (57%)

Query:   670 TIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINR 729
             T+++GGGTPSL+S   L+                 ITLEANP T   ++   +   G+NR
Sbjct:    61 TLYLGGGTPSLLSPAALERIIDAAARSYGLGPGAEITLEANPGTVTFQRLADFRSAGVNR 120

Query:   730 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDL 788
             LS+G+QSF++  L +LGR H ++QA+ A+   ++  F+N  +DLI++LP QT  +    L
Sbjct:   121 LSLGVQSFDDGMLVLLGRLHTARQAREAVAATRRAGFDNIGIDLIHSLPGQTPDQWREQL 180

Query:   789 NYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYKNY 845
               A+  +P H+S Y LT+E  T F        L +P  +++A+M +  T +L +  +++Y
Sbjct:   181 ACAVALNPDHVSAYGLTVEEGTPFAAMEERGELVLPDEEQSALMFEATTDVLVSAGFEHY 240

Query:   846 EISAYSKTGYESQHNLNYWKFGDYLG 871
             EI+ +++    S+HN  YW   +YLG
Sbjct:   241 EIANFARPHRRSRHNQVYWLRRNYLG 266


>POMBASE|SPBC23E6.06c [details] [associations]
            symbol:SPBC23E6.06c "3,4-dihydroxy-2-butanone
            4-phosphate synthase (predicted)" species:4896 "Schizosaccharomyces
            pombe" [GO:0005634 "nucleus" evidence=IDA] [GO:0005758
            "mitochondrial intermembrane space" evidence=ISS] [GO:0005829
            "cytosol" evidence=ISS;IDA] [GO:0008686
            "3,4-dihydroxy-2-butanone-4-phosphate synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            InterPro:IPR000422 Pfam:PF00926 UniPathway:UPA00275
            PomBase:SPBC23E6.06c GO:GO:0005829 GO:GO:0005634 GO:GO:0005758
            GO:GO:0046872 EMBL:CU329671 GO:GO:0009231 Gene3D:3.90.870.10
            InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0108 KO:K02858
            GO:GO:0008686 TIGRFAMs:TIGR00506 OrthoDB:EOG4NCQP1 PIR:T39940
            RefSeq:NP_596606.1 ProteinModelPortal:O60181 SMR:O60181
            STRING:O60181 PRIDE:O60181 EnsemblFungi:SPBC23E6.06c.1
            GeneID:2540577 KEGG:spo:SPBC23E6.06c HOGENOM:HOG000115444
            OMA:QMAKLIR NextBio:20801702 Uniprot:O60181
        Length = 204

 Score = 343 (125.8 bits), Expect = 4.7e-30, P = 4.7e-30
 Identities = 70/158 (44%), Positives = 101/158 (63%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I LD E RENEGD+I++   VT   + F+ +++ G +C+ +T +    L++ MM   N 
Sbjct:    18 LIVLDDETRENEGDLIIAGCKVTTEQMAFLVRHSSGYVCVPMTGERLDSLEIPMMVDNNE 77

Query:   324 SSFGTNFTVSIEAANGVTTGISASDRAHTIK-VASSKKAKPSDIVQPGHIFPLQAKKGGV 382
                 T + V+++ ANG TTGISA DRA T + +A+ +   P +  +PGHI PL+A+ GGV
Sbjct:    78 DRMRTAYAVTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRARDGGV 137

Query:   383 LIRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMAR 419
             L R GHTEA  DL KLAGL P   ICE++ + DG M+R
Sbjct:   138 LERDGHTEAAVDLCKLAGLPPVGAICELVREEDGLMSR 175


>TAIR|locus:2161897 [details] [associations]
            symbol:AT5G63290 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006779 "porphyrin-containing
            compound biosynthetic process" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0016491 "oxidoreductase activity"
            evidence=ISS] [GO:0051536 "iron-sulfur cluster binding"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006779 GO:GO:0051536
            EMBL:AB008265 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            eggNOG:COG0635 KO:K02495 TIGRFAMs:TIGR00539 UniGene:At.70283
            UniGene:At.8846 EMBL:BT029015 IPI:IPI00526807 RefSeq:NP_201134.1
            ProteinModelPortal:Q9FMJ4 STRING:Q9FMJ4 PRIDE:Q9FMJ4
            EnsemblPlants:AT5G63290.1 GeneID:836449 KEGG:ath:AT5G63290
            TAIR:At5g63290 HOGENOM:HOG000015380 InParanoid:Q9FMJ4 OMA:DWIHERT
            PhylomeDB:Q9FMJ4 ProtClustDB:CLSN2687553 Genevestigator:Q9FMJ4
            Uniprot:Q9FMJ4
        Length = 484

 Score = 342 (125.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 72/205 (35%), Positives = 113/205 (55%)

Query:   665 NRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSI 724
             N  + T+F GGGTPSL+    +                  I++E +P TF+ +K      
Sbjct:   124 NPNLETVFFGGGTPSLVPPKLVSLILETLSLNFGLSPDAEISMEMDPGTFDGQKLKDLMK 183

Query:   725 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSE 783
             +G+NR+S+G+Q+F ++ L   GR H   Q   AIE  K+    N+++DLI +LP+QTL  
Sbjct:   184 LGVNRVSLGVQAFQDELLKACGRAHGVSQVYEAIEFVKECGVENWSMDLISSLPHQTLEM 243

Query:   784 LMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK-YPP--LSMPSNDENAVMQDKITSLLKNN 840
                 L  AI+  P H+S+Y L +E  T F   Y P    +PS  ++A      +S+L+  
Sbjct:   244 WEESLRLAIESQPNHVSVYDLQVEQGTKFGNLYTPGQSPLPSETQSAEFYKTASSMLRGA 303

Query:   841 YYKNYEISAYSKTGYESQHNLNYWK 865
              Y++YE+S+YS+ G++ +HNL YWK
Sbjct:   304 GYEHYEVSSYSRDGFKCKHNLIYWK 328


>UNIPROTKB|Q8TG90 [details] [associations]
            symbol:RIB3 "3,4-dihydroxy-2-butanone 4-phosphate synthase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000422 Pfam:PF00926
            UniPathway:UPA00275 EMBL:CM001235 GO:GO:0046872 GO:GO:0009231
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0108 KO:K02858 GO:GO:0008686 TIGRFAMs:TIGR00506
            EMBL:AF430214 RefSeq:XP_003717890.1 PDB:1K49 PDB:1K4I PDB:1K4L
            PDB:1K4O PDB:1K4P PDBsum:1K49 PDBsum:1K4I PDBsum:1K4L PDBsum:1K4O
            PDBsum:1K4P ProteinModelPortal:Q8TG90 SMR:Q8TG90 STRING:Q8TG90
            EnsemblFungi:MGG_01049T0 GeneID:2674307 KEGG:mgr:MGG_01049
            OrthoDB:EOG4NCQP1 EvolutionaryTrace:Q8TG90 Uniprot:Q8TG90
        Length = 233

 Score = 328 (120.5 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 70/153 (45%), Positives = 98/153 (64%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             ++ LD  +RENE D+I++++ VT   + FM +++ GLIC  LT +    L L  M   N 
Sbjct:    28 VVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNA 87

Query:   324 SSFGTNFTVSIEAAN-GVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGV 382
                GT +TVS++A +   TTGISA DRA   ++ ++  A+PS   +PGH+FPL+A  GGV
Sbjct:    88 DPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGV 147

Query:   383 LIRGGHTEAGCDLTKLAGLTPSAVICEILNDDG 415
               R GHTEAG +L +LAG  P AVI EI+ DDG
Sbjct:   148 RARRGHTEAGVELCRLAGKRPVAVISEIV-DDG 179


>SGD|S000002895 [details] [associations]
            symbol:RIB3 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            (DHBP synthase)" species:4932 "Saccharomyces cerevisiae"
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=IEA;IMP] [GO:0009231 "riboflavin biosynthetic
            process" evidence=IEA;IMP] [GO:0016829 "lyase activity"
            evidence=IEA] [GO:0009060 "aerobic respiration" evidence=IMP]
            [GO:0005758 "mitochondrial intermembrane space" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR000422 Pfam:PF00926 UniPathway:UPA00275
            SGD:S000002895 GO:GO:0005829 GO:GO:0005758 GO:GO:0046872
            EMBL:BK006938 GO:GO:0009060 GO:GO:0009231 EMBL:U33050
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0108 KO:K02858 GO:GO:0008686 TIGRFAMs:TIGR00506
            OrthoDB:EOG4NCQP1 HOGENOM:HOG000115444 OMA:QMAKLIR EMBL:Z21619
            EMBL:AY557810 PIR:S50973 RefSeq:NP_010775.1
            ProteinModelPortal:Q99258 SMR:Q99258 DIP:DIP-4316N IntAct:Q99258
            MINT:MINT-477205 STRING:Q99258 PaxDb:Q99258 PeptideAtlas:Q99258
            EnsemblFungi:YDR487C GeneID:852098 KEGG:sce:YDR487C CYGD:YDR487c
            NextBio:970439 Genevestigator:Q99258 GermOnline:YDR487C
            Uniprot:Q99258
        Length = 208

 Score = 327 (120.2 bits), Expect = 2.5e-28, P = 2.5e-28
 Identities = 70/169 (41%), Positives = 104/169 (61%)

Query:   264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
             +I +D   RENEGD+I +++ V+   + F+ +++ G +C  +T  + I  KLD+   +  
Sbjct:    18 VIVMDDAGRENEGDLICAAENVSTEQMAFLVRHSSGYVCAPMT--NAIADKLDLPLLRTG 75

Query:   324 SSF--------GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPL 375
               F        GT +T++++ A G TTGISA DR+ T +  +   + P   ++PGHI PL
Sbjct:    76 MKFESNDDDRHGTAYTITVDVAQGTTTGISAHDRSMTCRALADSSSTPKSFLKPGHICPL 135

Query:   376 QAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDD--GTMARAQE 422
             +A  GGVL R GHTEAG DL KL+GL+P AVI E++NDD  GTM R  +
Sbjct:   136 RAADGGVLQRRGHTEAGVDLCKLSGLSPVAVIGELVNDDEQGTMMRLND 184


>TIGR_CMR|CHY_0411 [details] [associations]
            symbol:CHY_0411 "putative oxygen-independent
            coproporphyrinogen III oxidase" species:246194 "Carboxydothermus
            hydrogenoformans Z-2901" [GO:0004109 "coproporphyrinogen oxidase
            activity" evidence=ISS] [GO:0006779 "porphyrin-containing compound
            biosynthetic process" evidence=ISS] InterPro:IPR004559
            InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006779
            GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            eggNOG:COG0635 KO:K02495 InterPro:IPR010723 Pfam:PF06969
            TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 RefSeq:YP_359272.1
            ProteinModelPortal:Q3AF12 STRING:Q3AF12 GeneID:3727497
            KEGG:chy:CHY_0411 PATRIC:21273983 OMA:MPAYEVS
            BioCyc:CHYD246194:GJCN-412-MONOMER Uniprot:Q3AF12
        Length = 376

 Score = 320 (117.7 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 73/217 (33%), Positives = 113/217 (52%)

Query:   668 IHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGI 727
             + TI++GGGTP+ +S   L+                  T+EANP T   EK      +G+
Sbjct:    58 LKTIYVGGGTPTSLSLNALE-KLGEIISPYISDKLLEFTVEANPGTLNREKIRLLKDLGV 116

Query:   728 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELML 786
             NR+S+G QSFN++ L  +GR H + Q   A  + ++   NN NLDLI   P    S  + 
Sbjct:   117 NRVSLGAQSFNDEILLKMGRAHTAAQTLEAYNLLREEGINNLNLDLIIGYPEGRES-FIN 175

Query:   787 DLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYK 843
              +  AI   P H+SLY L +E NT  ++      + +P  DE  +  ++  +LL+ N Y+
Sbjct:   176 TVKTAISLKPEHISLYDLKVEENTRLYEEVAKGEIILPEEDEVVLYWEEAINLLEENGYE 235

Query:   844 NYEISAYSKTGYESQHNLNYWKFGDYLGNSIAKSKKI 880
              YEI+ +++    S+HNL YW+   YLG  +A   K+
Sbjct:   236 RYEIANFARNQQYSRHNLTYWENKPYLGIGLAAHSKV 272


>TIGR_CMR|NSE_0649 [details] [associations]
            symbol:NSE_0649 "3,4-dihydroxy-2-butanone 4-phosphate
            synthase" species:222891 "Neorickettsia sennetsu str. Miyayama"
            [GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase
            activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISS] InterPro:IPR000422 Pfam:PF00926
            GO:GO:0046872 GO:GO:0009231 EMBL:CP000237 GenomeReviews:CP000237_GR
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0108 GO:GO:0008686 HOGENOM:HOG000115444 KO:K14652
            RefSeq:YP_506527.1 ProteinModelPortal:Q2GDB9 STRING:Q2GDB9
            GeneID:3931973 KEGG:nse:NSE_0649 PATRIC:22681323 OMA:ESSNVAR
            ProtClustDB:CLSK2527710 BioCyc:NSEN222891:GHFU-663-MONOMER
            Uniprot:Q2GDB9
        Length = 210

 Score = 320 (117.7 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 60/155 (38%), Positives = 96/155 (61%)

Query:   267 LDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN--S 324
             +DS +RENEGDI++    +T   +NF+  + RGL C+ +T+  C +L LD++ + ++  S
Sbjct:    22 VDSSDRENEGDIVVPVQILTSEIMNFVVTHCRGLPCVCVTKSLCEKLGLDLIKRSDSCES 81

Query:   325 SFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLI 384
             S    F  +IEA  GV+TGIS  DR  T+++ ++        V PGH+FPL  ++GG+++
Sbjct:    82 SNVARFVTTIEAKEGVSTGISVRDRVRTMRLLANDNVDKDSFVSPGHVFPLMIEEGGLMV 141

Query:   385 RGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
             R GHTE      +LAG    +++CEIL++ G  AR
Sbjct:   142 RSGHTEGAATFARLAGFKSESMLCEILDEAGDAAR 176


>TIGR_CMR|CJE_0683 [details] [associations]
            symbol:CJE_0683 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:195099 "Campylobacter jejuni RM1221"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
            GO:GO:0006779 GO:GO:0051536 EMBL:CP000025 GenomeReviews:CP000025_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
            KO:K02495 TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 PIR:C81405
            RefSeq:YP_178695.1 ProteinModelPortal:Q5HVJ0 STRING:Q5HVJ0
            GeneID:3231995 KEGG:cjr:CJE0683 PATRIC:20043094 OMA:LAYWGAK
            ProtClustDB:PRK08446 BioCyc:CJEJ195099:GJC0-700-MONOMER
            Uniprot:Q5HVJ0
        Length = 355

 Score = 305 (112.4 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 104/307 (33%), Positives = 154/307 (50%)

Query:   645 EKKYLEALLIDVELSLPI--ILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             EK Y +AL  D+   L    I + +I T+FIGGGTPS ++    +Y              
Sbjct:    28 EKAYFKALKEDIVFQLKQFNIQSNQIKTLFIGGGTPSCVN--AYNYEDIFKILYPLLDKN 85

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               I+ EANP++  +    +   +G+NR+S G+QSF+ K L+ LGR H+ +     +E A 
Sbjct:    86 VEISCEANPNSATLNWLKNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENAN 145

Query:   763 QY-FNNFNLDLIY--ALPNQTLSEL-MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPL 818
             +  F N NLDLIY   L N+ + E  +L L   I+    HLS Y+LTIE NT F K    
Sbjct:   146 KVGFKNINLDLIYDTKLDNKKMLEFELLHLKQ-IKDLITHLSAYNLTIESNTAFAKKEHF 204

Query:   819 SMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYE-SQHNLNYWKFGDYLGNSIAKS 877
                 N  N +M+  I  LL+ ++++ YEIS +SKT  +  +HNL YW+  +YL   ++  
Sbjct:   205 K--KNAPN-LMKFFIKQLLELDFFQ-YEISNFSKTKAQICKHNLAYWQGKNYLACGLSAV 260

Query:   878 KKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIK 937
                E K     F   A  LK+ +  N  F     +I+ + SK  N E L L  R+   I 
Sbjct:   261 GFYENK----RFY-TAKNLKN-YIENPTFR----SIEQLSSKDLNLEHLFLGLRSIVGID 310

Query:   938 PTSFGRY 944
              T   ++
Sbjct:   311 ETKLNQW 317


>UNIPROTKB|A5D7B1 [details] [associations]
            symbol:RSAD1 "Radical S-adenosyl methionine
            domain-containing protein 1, mitochondrial" species:9913 "Bos
            taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051539 "4
            iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
            ion binding" evidence=IEA] [GO:0006779 "porphyrin-containing
            compound biosynthetic process" evidence=IEA] [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=IEA]
            InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0046872
            GO:GO:0051539 GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404
            GO:GO:0004109 eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969
            EMBL:BC140491 IPI:IPI00706716 RefSeq:NP_001091605.1
            UniGene:Bt.29418 ProteinModelPortal:A5D7B1 STRING:A5D7B1
            GeneID:615755 KEGG:bta:615755 CTD:55316 HOGENOM:HOG000015381
            HOVERGEN:HBG108421 InParanoid:A5D7B1 OrthoDB:EOG4SQWX4
            NextBio:20899769 TIGRFAMs:TIGR00539 Uniprot:A5D7B1
        Length = 442

 Score = 315 (115.9 bits), Expect = 7.1e-26, P = 7.1e-26
 Identities = 71/233 (30%), Positives = 122/233 (52%)

Query:   643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             +DE      L+I+ +  L +   R++ ++F GGGTPSL S   +                
Sbjct:    66 VDEAALRRCLVIEAQTLLRLSGVRRVESVFFGGGTPSLASPHTVAAVLEAVAQAAHLPAD 125

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               +TLEANP++    +  ++   G+NRLSIG+QS ++  L +LGRTH ++ A   +  A+
Sbjct:   126 SEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQSLDDTELQLLGRTHSARDALQTLAEAQ 185

Query:   763 QYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF-KYPPLSM 820
             + F    ++DL+  LP Q +   +  L   ++    H+SLY L++E  T  F +    ++
Sbjct:   186 RLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCCDDHVSLYQLSLERGTTLFTQVQQGAL 245

Query:   821 PSNDEN--AVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             P+ D    A M  +  ++L+   ++ YE+S +++ G  S HN  YW+ G YLG
Sbjct:   246 PAPDPELAAEMYQEGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLG 298


>UNIPROTKB|G5E5Q7 [details] [associations]
            symbol:RSAD1 "Radical S-adenosyl methionine
            domain-containing protein 1, mitochondrial" species:9913 "Bos
            taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051536
            "iron-sulfur cluster binding" evidence=IEA] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=IEA]
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
            InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0006779
            GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            InterPro:IPR010723 Pfam:PF06969 UniGene:Bt.29418 TIGRFAMs:TIGR00539
            OMA:WLGQLQE GeneTree:ENSGT00390000011216 EMBL:DAAA02049037
            ProteinModelPortal:G5E5Q7 Ensembl:ENSBTAT00000028387 Uniprot:G5E5Q7
        Length = 442

 Score = 315 (115.9 bits), Expect = 7.1e-26, P = 7.1e-26
 Identities = 71/233 (30%), Positives = 122/233 (52%)

Query:   643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             +DE      L+I+ +  L +   R++ ++F GGGTPSL S   +                
Sbjct:    66 VDEAALRRCLVIEAQTLLRLSGVRRVESVFFGGGTPSLASPHTVAAVLEAVAQAAHLPAD 125

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               +TLEANP++    +  ++   G+NRLSIG+QS ++  L +LGRTH ++ A   +  A+
Sbjct:   126 SEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQSLDDTELQLLGRTHSARDALQTLAEAQ 185

Query:   763 QYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF-KYPPLSM 820
             + F    ++DL+  LP Q +   +  L   ++    H+SLY L++E  T  F +    ++
Sbjct:   186 RLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCCDDHVSLYQLSLERGTTLFTQVQQGAL 245

Query:   821 PSNDEN--AVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             P+ D    A M  +  ++L+   ++ YE+S +++ G  S HN  YW+ G YLG
Sbjct:   246 PAPDPELAAEMYQEGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLG 298


>ZFIN|ZDB-GENE-030131-2508 [details] [associations]
            symbol:rsad1 "radical S-adenosyl methionine domain
            containing 1" species:7955 "Danio rerio" [GO:0051536 "iron-sulfur
            cluster binding" evidence=IEA] [GO:0004109 "coproporphyrinogen
            oxidase activity" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0016491 "oxidoreductase activity"
            evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
            evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            ZFIN:ZDB-GENE-030131-2508 GO:GO:0005737 GO:GO:0006779 GO:GO:0051536
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539 OMA:WLGQLQE
            GeneTree:ENSGT00390000011216 EMBL:BX682552 IPI:IPI00846095
            ProteinModelPortal:F1RB14 Ensembl:ENSDART00000110809 Bgee:F1RB14
            Uniprot:F1RB14
        Length = 444

 Score = 314 (115.6 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 69/226 (30%), Positives = 114/226 (50%)

Query:   650 EALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEA 709
             E L  + E  L +    +I ++F GGGTPSL   + +                  +TLE 
Sbjct:    77 ECLQKETETLLKLSQVSRITSVFFGGGTPSLAQSSTIAAVLETVTKNSNLSDLAEVTLEV 136

Query:   710 NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNF 768
             NP+     +   +++ G+NR SIG+QS N  +L ILGR H  + A   +  A++      
Sbjct:   137 NPTPAGKARLKDFTLAGVNRFSIGVQSLNADHLRILGRDHSVQHALQTVSEARKLCPGRV 196

Query:   769 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDE 825
             ++D+++ALP Q++S     L   +     H+SLY LT+E  T  FK      LS+P ++ 
Sbjct:   197 SVDIMFALPGQSVSCWQKQLEELLYVCDDHISLYQLTLERGTQLFKQVESGKLSVPGDEV 256

Query:   826 NAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
              AVM      +L+ + +  YE+S +++    S+HN+ YW+   Y+G
Sbjct:   257 TAVMYKTACRVLEESGFHQYEVSNFARNNAVSEHNMGYWRGHQYIG 302


>UNIPROTKB|F1RT95 [details] [associations]
            symbol:RSAD1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051536
            "iron-sulfur cluster binding" evidence=IEA] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=IEA]
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
            InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0006779
            GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            TIGRFAMs:TIGR00539 OMA:WLGQLQE GeneTree:ENSGT00390000011216
            EMBL:FP565647 RefSeq:XP_003131622.1 UniGene:Ssc.6397
            ProteinModelPortal:F1RT95 Ensembl:ENSSSCT00000019122
            GeneID:100513042 KEGG:ssc:100513042 Uniprot:F1RT95
        Length = 442

 Score = 308 (113.5 bits), Expect = 6.4e-25, P = 6.4e-25
 Identities = 70/233 (30%), Positives = 120/233 (51%)

Query:   643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             +DE      L+ + +  L +   +++ ++F GGGTPSL S   +                
Sbjct:    66 VDEAAMRRCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPRTVAAVLEAVAQATHLPVD 125

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               +TLEANP++    +  ++   G+NRLSIG+QS ++  L +LGRTH +  A   +  A+
Sbjct:   126 SEVTLEANPTSAPGSRLAAFRAAGVNRLSIGLQSLDDAELQLLGRTHSASDALRTLAEAR 185

Query:   763 QYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF-KYPPLSM 820
             + F    ++DL+  LP Q +   +  L   ++    H+SLY LT+E  T  F +    ++
Sbjct:   186 RLFPGRVSVDLLLGLPAQQVGPWLRQLQELLRRCDDHVSLYQLTLERGTALFAQVQQGAL 245

Query:   821 PSNDEN--AVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             P+ D    A M  +  ++L+   ++ YE+S +++ G  S HN  YW+ G YLG
Sbjct:   246 PAPDPELAAEMYQQGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLG 298


>MGI|MGI:3039628 [details] [associations]
            symbol:Rsad1 "radical S-adenosyl methionine domain
            containing 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0004109 "coproporphyrinogen oxidase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
            binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
            binding" evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 MGI:MGI:3039628
            GO:GO:0005739 GO:GO:0046872 GO:GO:0051539 GO:GO:0006779
            EMBL:AL645809 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969 CTD:55316
            HOGENOM:HOG000015381 HOVERGEN:HBG108421 OrthoDB:EOG4SQWX4
            TIGRFAMs:TIGR00539 OMA:WLGQLQE EMBL:BC056485 EMBL:BC139274
            EMBL:BC139276 IPI:IPI00121868 RefSeq:NP_001013399.1
            UniGene:Mm.342275 ProteinModelPortal:Q5SUV1 STRING:Q5SUV1
            PRIDE:Q5SUV1 Ensembl:ENSMUST00000040487 GeneID:237926
            KEGG:mmu:237926 UCSC:uc007kza.2 GeneTree:ENSGT00390000011216
            InParanoid:B2RTE1 NextBio:383574 Bgee:Q5SUV1 CleanEx:MM_RSAD1
            Genevestigator:Q5SUV1 Uniprot:Q5SUV1
        Length = 442

 Score = 305 (112.4 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 71/233 (30%), Positives = 117/233 (50%)

Query:   643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             ++E      L+ +    L +   +++ ++F GGGTPSL S   +                
Sbjct:    66 VEEGTVRNCLVTEARTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQEVYLPAD 125

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               +TLEANP++    +  ++   G+NRLSIG+QS ++  L +LGRTH +  A   +  A+
Sbjct:   126 SEVTLEANPTSAPGPRLAAFGAAGVNRLSIGLQSLDDAELQLLGRTHSASDALRTLAEAR 185

Query:   763 QYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF---KYPPL 818
               F    ++DL+  LP Q +   +  L   + +   HLSLY LT+E  T  F   +   L
Sbjct:   186 LLFPGRVSVDLMLGLPAQKVEPWLQQLQKLLYHCDDHLSLYQLTLERGTSLFAQVQQGTL 245

Query:   819 SMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
               P  D  A M  +  ++L++  ++ YE+S +++ G  S HN  YW+ G YLG
Sbjct:   246 PAPDPDLAAEMYQEGRTVLRDAGFRQYEVSNFARNGALSTHNWTYWQCGQYLG 298


>UNIPROTKB|Q9HA92 [details] [associations]
            symbol:RSAD1 "Radical S-adenosyl methionine
            domain-containing protein 1, mitochondrial" species:9606 "Homo
            sapiens" [GO:0004109 "coproporphyrinogen oxidase activity"
            evidence=IEA] [GO:0006779 "porphyrin-containing compound
            biosynthetic process" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0046872
            GO:GO:0051539 GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404
            GO:GO:0004109 eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969
            CTD:55316 HOGENOM:HOG000015381 HOVERGEN:HBG108421 OrthoDB:EOG4SQWX4
            TIGRFAMs:TIGR00539 OMA:WLGQLQE EMBL:AK002026 EMBL:AK022105
            EMBL:AK222472 EMBL:BC005854 EMBL:BC050538 IPI:IPI00550335
            RefSeq:NP_060816.1 UniGene:Hs.8033 ProteinModelPortal:Q9HA92
            SMR:Q9HA92 IntAct:Q9HA92 STRING:Q9HA92 DMDM:145566941 PRIDE:Q9HA92
            Ensembl:ENST00000258955 GeneID:55316 KEGG:hsa:55316 UCSC:uc002iqw.1
            GeneCards:GC17P048556 HGNC:HGNC:25634 HPA:HPA022436 HPA:HPA022967
            neXtProt:NX_Q9HA92 PharmGKB:PA134945325 InParanoid:Q9HA92
            PhylomeDB:Q9HA92 GenomeRNAi:55316 NextBio:59563 ArrayExpress:Q9HA92
            Bgee:Q9HA92 CleanEx:HS_RSAD1 Genevestigator:Q9HA92 Uniprot:Q9HA92
        Length = 442

 Score = 296 (109.3 bits), Expect = 2.1e-23, P = 2.1e-23
 Identities = 69/233 (29%), Positives = 118/233 (50%)

Query:   643 IDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXX 702
             ++E    + L+ + +  L +   +++ ++F GGGTPSL S   +                
Sbjct:    66 LEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQAAHLPAD 125

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               +TLEANP++    +   +   G+NRLSIG+QS ++  L +LGRTH +  A   +  A+
Sbjct:   126 LEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRTLAEAR 185

Query:   763 QYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPL-SM 820
             + F    ++DL+  LP Q +   +  L   + +   HLSLY L++E  T  F      ++
Sbjct:   186 RLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRGAL 245

Query:   821 PSNDEN--AVMQDKITSLLKNNYYKNYEISAYSKTGYESQHNLNYWKFGDYLG 871
             P+ D    A M  +  ++L+   +  YE+S +++ G  S HN  YW+ G YLG
Sbjct:   246 PAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLG 298


>DICTYBASE|DDB_G0280411 [details] [associations]
            symbol:DDB_G0280411 "radical S-adenosyl methionine
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0051536
            "iron-sulfur cluster binding" evidence=IEA] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
            cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004559
            InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            dictyBase:DDB_G0280411 GO:GO:0005739 GenomeReviews:CM000152_GR
            GO:GO:0046872 GO:GO:0051539 GO:GO:0006779 EMBL:AAFI02000036
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
            KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
            RefSeq:XP_641161.1 ProteinModelPortal:Q54VE8 STRING:Q54VE8
            EnsemblProtists:DDB0205185 GeneID:8622541 KEGG:ddi:DDB_G0280411
            OMA:WLGQLQE ProtClustDB:CLSZ2430610 Uniprot:Q54VE8
        Length = 446

 Score = 289 (106.8 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 76/236 (32%), Positives = 126/236 (53%)

Query:   663 ILNRKIHTIFIGGGTPSLIS-DTGLDYXXXXXXX--XXXXXXXXSITLEANPSTFEIEK- 718
             I  R I +I+ GGGTPSL    T ++                   ITLE NP   +++  
Sbjct:    82 IRERPITSIYFGGGTPSLAKISTFVETIETMKKLFPSSLSIEDIEITLEVNPDQKDLKNL 141

Query:   719 ---FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYA 775
                F  Y  +G+NR+S+G+QS  +K L+ LGRTH+  QA+ +I+IA+  F++   DLIY+
Sbjct:   142 LKDFKKY--VGVNRVSLGVQSLVDKDLHFLGRTHNRIQAEESIKIARDLFDHVTFDLIYS 199

Query:   776 LP-NQTLSELMLDLNYAIQYSPP--HLSLYSLTIEPNTYFFKYPPLS------MPSNDEN 826
                +QTL +   +L YA+  +    H+SLY+LT E  T F++           +P +D+ 
Sbjct:   200 RTIDQTLEQWRNELRYALNLADGNGHVSLYTLTFEQGTSFYRRLSSKGNKFKIIPPDDQK 259

Query:   827 AV-MQDKITSLLKNNYYKNYEISAYSKT-GYESQHNLNYWKFGDYLGNSIAKSKKI 880
             +  + D      +   ++ YEIS+++ +   + +HNLNYW+ GD++G     S ++
Sbjct:   260 SSDLYDLTVCEAEAMGFQQYEISSFASSHNQKGKHNLNYWRSGDFIGIGPGASSRL 315


>UNIPROTKB|Q3A9L8 [details] [associations]
            symbol:CHY_2369 "tRNA-dihydrouridine synthase"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
            GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
            TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
            STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
            HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
            Uniprot:Q3A9L8
        Length = 321

 Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 71/239 (29%), Positives = 128/239 (53%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKK--HCLDFNAEEHPI 66
             K  + +APM  +TD+  R+  +         TEM    A+L GN K    +D   E  P+
Sbjct:    11 KNPVIVAPMAGVTDKAFRLICQSFGA-GLTVTEMINDLALLHGNSKTRQMIDLQGEAMPV 69

Query:    67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-VQNGFFGAILMTKPLLVSDCIK 125
             A Q+  + P+K+A++A+I+++ G   I++N GCP+ + V+NG  GA LM KP L    + 
Sbjct:    70 AVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGE-GAALMLKPELAEKIVM 128

Query:   126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
             A++++V + ++VK R G DD N+ + + +F   + +AG     VH R    +  + K + 
Sbjct:   129 AVKNAVSVPVSVKIRKGFDD-NTVNAI-EFAQRMEAAGADLITVHGRTRE-QFYSGKADW 185

Query:   186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLM 242
             +I       +  +K+   ++++  NG + + ++    L L  +D VM+GR    NP+L+
Sbjct:   186 EI-------IRRVKQAV-KVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPWLI 236


>TIGR_CMR|CHY_2369 [details] [associations]
            symbol:CHY_2369 "putative TIM-barrel protein, NifR3
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
            GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
            TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
            STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
            HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
            Uniprot:Q3A9L8
        Length = 321

 Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 71/239 (29%), Positives = 128/239 (53%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKK--HCLDFNAEEHPI 66
             K  + +APM  +TD+  R+  +         TEM    A+L GN K    +D   E  P+
Sbjct:    11 KNPVIVAPMAGVTDKAFRLICQSFGA-GLTVTEMINDLALLHGNSKTRQMIDLQGEAMPV 69

Query:    67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-VQNGFFGAILMTKPLLVSDCIK 125
             A Q+  + P+K+A++A+I+++ G   I++N GCP+ + V+NG  GA LM KP L    + 
Sbjct:    70 AVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGE-GAALMLKPELAEKIVM 128

Query:   126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
             A++++V + ++VK R G DD N+ + + +F   + +AG     VH R    +  + K + 
Sbjct:   129 AVKNAVSVPVSVKIRKGFDD-NTVNAI-EFAQRMEAAGADLITVHGRTRE-QFYSGKADW 185

Query:   186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLM 242
             +I       +  +K+   ++++  NG + + ++    L L  +D VM+GR    NP+L+
Sbjct:   186 EI-------IRRVKQAV-KVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPWLI 236


>DICTYBASE|DDB_G0277081 [details] [associations]
            symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
            species:44689 "Dictyostelium discoideum" [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
            evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
            EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
            InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
        Length = 392

 Score = 251 (93.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
 Identities = 78/266 (29%), Positives = 138/266 (51%)

Query:     1 MNMINSKYNKRKISIAPMMNLTDRHCR-MFHRQITRYSWLYTEMFTTQAILGNKKHCLD- 58
             MN   +K +K   S+APM ++TD   R +    + + + ++ E  +   +  N++  +D 
Sbjct:     1 MNGFWNKLSKPIFSLAPMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARNREALIDK 60

Query:    59 --FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG--FFGAILM 114
               ++ +E PI  Q   N+P+   +SAKI  + GYD +++N GCPS +V +     GA L+
Sbjct:    61 LGYSTQEKPIVAQFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALI 120

Query:   115 TKPLLVSDCIKAMRDSVEID--ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172
             T P L  + +K  ++++  +  ++VK RIG D I   +++   +   S   C T  +H R
Sbjct:   121 TNPSLAKEIVKITKEALNFEKPVSVKTRIGFDKIEIDEWIPLILE--SEPACLT--LHLR 176

Query:   173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY--IDG 228
                   L P  + +  +L  + V  L+    P   ++ NG ++T ++ ID ++N   IDG
Sbjct:   177 TKKELSLVPA-HWEHQVL--DRVVELRNQISPNTLLVGNGDVETYEQGID-YINQFGIDG 232

Query:   229 VMLGREAYKNPFLMS-NFDLNYYSNL 253
             VM+GR  Y NP+L + N  + Y   L
Sbjct:   233 VMIGRAVYGNPWLFNKNLVIQYQPGL 258

 Score = 49 (22.3 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query:   739 NKYLNI---LGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTL---SELMLDLNYAI 792
             N YL     LG T + K+  +  E ++Q  N  N  LI+   +  L   SE+ L +   I
Sbjct:   324 NSYLKCCSNLGGTTNLKKVLFDCETSEQVLNQLNNYLIFKNKSDQLLNYSEIKLSIQNLI 383

Query:   793 QYS 795
               S
Sbjct:   384 NNS 386


>TIGR_CMR|CPS_1532 [details] [associations]
            symbol:CPS_1532 "transcription termination/antitermination
            factor NusB" species:167879 "Colwellia psychrerythraea 34H"
            [GO:0006353 "DNA-dependent transcription, termination"
            evidence=ISS] HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605
            Pfam:PF01029 GO:GO:0006355 GO:GO:0003723 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006353 eggNOG:COG0781 KO:K03625
            Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
            TIGRFAMs:TIGR01951 RefSeq:YP_268274.1 HSSP:Q9X286
            ProteinModelPortal:Q485J1 SMR:Q485J1 STRING:Q485J1 GeneID:3519785
            KEGG:cps:CPS_1532 PATRIC:21466271 HOGENOM:HOG000281868 OMA:IPYKVVI
            BioCyc:CPSY167879:GI48-1613-MONOMER Uniprot:Q485J1
        Length = 138

 Score = 227 (85.0 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 47/125 (37%), Positives = 75/125 (60%)

Query:   530 TPRHRAREFALQGIYQWLFNNMDVNLIET-YIKEISNFYKVDKKYFYLILRGVINDINFL 588
             +PR +ARE A+Q +Y W  +   VN IE  +I + S   + D +YF L+LRGV  +I  +
Sbjct:     4 SPRRKARELAVQAVYSWQVSKNPVNDIEVNFIADNSK-RRFDIEYFQLLLRGVTTNIGSI 62

Query:   589 RYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKY 648
                +   +DR ++++  +E  +L +  +ELK    +PY+V+INEAIEL KSF   D  K+
Sbjct:    63 DEAIIPYVDRPLDDIDQVEKAILRVAVFELKDCTDVPYRVVINEAIELAKSFAADDSHKF 122

Query:   649 LEALL 653
             +  +L
Sbjct:   123 VNGVL 127


>TIGR_CMR|CBU_1417 [details] [associations]
            symbol:CBU_1417 "N utilization substance protein B"
            species:227377 "Coxiella burnetii RSA 493" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 GO:GO:0003723 EMBL:AE016828 GenomeReviews:AE016828_GR
            GO:GO:0006353 eggNOG:COG0781 KO:K03625 OMA:TEYVEIA
            ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
            SUPFAM:SSF48013 TIGRFAMs:TIGR01951 HOGENOM:HOG000281868
            RefSeq:NP_820401.1 ProteinModelPortal:Q83BT5 GeneID:1209323
            KEGG:cbu:CBU_1417 PATRIC:17931587
            BioCyc:CBUR227377:GJ7S-1404-MONOMER Uniprot:Q83BT5
        Length = 138

 Score = 217 (81.4 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 49/129 (37%), Positives = 73/129 (56%)

Query:   528 NKTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINF 587
             NKT RH AR +ALQ +YQW F     + + +   E  +    D  YF  ++ G I  +  
Sbjct:     3 NKT-RHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVAI 61

Query:   588 LRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
             +   ++  +DR I+ L+ +E  VL +  YEL    ++PYKV+I+EA+ELVK FG     K
Sbjct:    62 IDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGHK 121

Query:   648 YLEALLIDV 656
             Y+ A+L DV
Sbjct:   122 YVNAIL-DV 129


>UNIPROTKB|P0A780 [details] [associations]
            symbol:nusB "transcription antitermination protein NusB"
            species:83333 "Escherichia coli K-12" [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0006353 "DNA-dependent transcription,
            termination" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003723 EMBL:U82664 GO:GO:0006353
            EMBL:X64395 eggNOG:COG0781 KO:K03625 OMA:TEYVEIA
            ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
            SUPFAM:SSF48013 TIGRFAMs:TIGR01951 HOGENOM:HOG000281868 EMBL:X00681
            EMBL:M26839 PIR:I51822 RefSeq:NP_414950.1 RefSeq:YP_488708.1
            PDB:1EY1 PDB:3D3B PDB:3D3C PDB:3IMQ PDBsum:1EY1 PDBsum:3D3B
            PDBsum:3D3C PDBsum:3IMQ ProteinModelPortal:P0A780 SMR:P0A780
            DIP:DIP-48254N IntAct:P0A780 MINT:MINT-1220894 PRIDE:P0A780
            EnsemblBacteria:EBESCT00000001949 EnsemblBacteria:EBESCT00000016204
            GeneID:12930840 GeneID:945054 KEGG:ecj:Y75_p0404 KEGG:eco:b0416
            PATRIC:32115981 EchoBASE:EB0660 EcoGene:EG10666
            BioCyc:EcoCyc:EG10666-MONOMER BioCyc:ECOL316407:JW0406-MONOMER
            EvolutionaryTrace:P0A780 Genevestigator:P0A780 Uniprot:P0A780
        Length = 139

 Score = 209 (78.6 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 51/137 (37%), Positives = 72/137 (52%)

Query:   532 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYD 591
             R RARE A+Q +Y W  +  D+  +E       +   VD  YF  +L GV  +  +L   
Sbjct:     6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65

Query:   592 LSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEA 651
             +   + R + EL  +E  VL I  YEL     +PYKV INEAIEL KSFG  D  K++  
Sbjct:    66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125

Query:   652 LLIDVELSLPIIL-NRK 667
             +L   + + P+I  N+K
Sbjct:   126 VL---DKAAPVIRPNKK 139


>TIGR_CMR|CJE_0432 [details] [associations]
            symbol:CJE_0432 "6,7-dimethyl-8-ribityllumazine synthase"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016740 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009231
            eggNOG:COG0054 KO:K00794 GO:GO:0009349 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114
            HOGENOM:HOG000229249 ProtClustDB:PRK00061 RefSeq:YP_178451.1
            HSSP:O66529 ProteinModelPortal:Q5HW84 SMR:Q5HW84 STRING:Q5HW84
            GeneID:3231194 KEGG:cjr:CJE0432 PATRIC:20042564 OMA:IVSMESA
            BioCyc:CJEJ195099:GJC0-437-MONOMER Uniprot:Q5HW84
        Length = 154

 Score = 208 (78.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 40/88 (45%), Positives = 59/88 (67%)

Query:   421 QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQI 480
             +E+N+  I VPGA E+P ALK  I+ KKF+ +  +G +IRG T HF+ ++ ET   I  +
Sbjct:    45 KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIANV 104

Query:   481 SIKNNIPIINAILTTETIEQANSRILTK 508
             S+ +NIP+   +LTT+TIEQA  R  +K
Sbjct:   105 SLNHNIPVSFGVLTTDTIEQAIERAGSK 132


>TIGR_CMR|APH_0575 [details] [associations]
            symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
            modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
            GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
            RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
            GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
            ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
            Uniprot:Q2GKD5
        Length = 315

 Score = 217 (81.4 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 67/256 (26%), Positives = 126/256 (49%)

Query:     9 NKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP-IA 67
             ++  + +APM  +TD   R   R++     L +EM  ++A++   +  +   +E  P  +
Sbjct:     6 SENPVILAPMSGVTDLPFRTTVRKLGA-GLLISEMVASRAMILKTRQSMQ-KSEVCPNTS 63

Query:    68 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM 127
              Q+    P+ +A++AKI +  G   I+LN GCP+ +V +G+ G+ LM   ++ +  ++++
Sbjct:    64 VQLAGCTPEIMAEAAKINEDLGAKSIDLNFGCPAKKVVDGYAGSALMKDEVIATKIMESV 123

Query:   128 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
               +V++ +TVK R+G D  N               G +   +H R         +     
Sbjct:   124 VKAVKVPVTVKMRMGWDTTNLN--APTLAKVAEDVGIQMITIHGRT--------RSQMFS 173

Query:   188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNF 245
                 + FV  +K +  ++ +I+NG I+T  +I + LN    DGVM+GR AY  P+L+   
Sbjct:   174 GSADWKFVKRVK-ECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGAYGKPWLIKQA 232

Query:   246 DLNYYSNLPQYKIPTR 261
              L++  N      PT+
Sbjct:   233 -LSFMKNSEILPEPTK 247


>TIGR_CMR|BA_4334 [details] [associations]
            symbol:BA_4334 "6,7-dimethyl-8-ribityllumazine synthase"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
            GO:GO:0009231 eggNOG:COG0054 HOGENOM:HOG000229253 KO:K00794
            GO:GO:0009349 Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 OMA:GRFNSFI RefSeq:NP_846567.1
            RefSeq:YP_020980.1 RefSeq:YP_030271.1 PDB:1VSW PDB:1VSX PDB:3JV8
            PDBsum:1VSW PDBsum:1VSX PDBsum:3JV8 ProteinModelPortal:Q81MB5
            SMR:Q81MB5 DNASU:1087551 EnsemblBacteria:EBBACT00000008556
            EnsemblBacteria:EBBACT00000015171 EnsemblBacteria:EBBACT00000022183
            GeneID:1087551 GeneID:2815209 GeneID:2850962 KEGG:ban:BA_4334
            KEGG:bar:GBAA_4334 KEGG:bat:BAS4021 ProtClustDB:PRK00061
            BioCyc:BANT260799:GJAJ-4078-MONOMER
            BioCyc:BANT261594:GJ7F-4218-MONOMER Uniprot:Q81MB5
        Length = 153

 Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 39/96 (40%), Positives = 59/96 (61%)

Query:   414 DGTMARAQEKNILHIS-VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANE 472
             DG      E+N + ++ VPGA EIPL  K +    K++ +I +G +IRG T H++ + NE
Sbjct:    35 DGLKRHGVEENDIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNE 94

Query:   473 TISNIMQISIKNNIPIINAILTTETIEQANSRILTK 508
                 +  +S++ +IP+I  +LTTETIEQA  R  TK
Sbjct:    95 VAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTK 130


>UNIPROTKB|Q9KVM5 [details] [associations]
            symbol:VC_0116 "Oxygen-independent coproporphyrinogen III
            oxidase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0004109 "coproporphyrinogen oxidase activity"
            evidence=ISS] [GO:0006779 "porphyrin-containing compound
            biosynthetic process" evidence=ISS] InterPro:IPR004558
            InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779
            GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249 InterPro:IPR010723
            Pfam:PF06969 TIGRFAMs:TIGR00538 HSSP:P32131 PIR:B82362
            RefSeq:NP_229775.1 ProteinModelPortal:Q9KVM5 SMR:Q9KVM5
            DNASU:2614871 GeneID:2614871 KEGG:vch:VC0116 PATRIC:20079276
            Uniprot:Q9KVM5
        Length = 480

 Score = 216 (81.1 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 53/199 (26%), Positives = 91/199 (45%)

Query:   647 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSIT 706
             +YL+ L  ++     +++ R +  +  GGGTP+ +++  +                  I+
Sbjct:   107 EYLDVLEHEIRQRASLLIGRNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFADEAEIS 166

Query:   707 LEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 765
             +E +P   ++E        G NR+SIG+Q FN +   ++ R  D +     +E AKQ  F
Sbjct:   167 IEIDPREIQLEVLDHLRQEGFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLVERAKQLGF 226

Query:   766 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSN 823
              + NLDLIY LP QT       L   +   P  LS+++    P  +    K     +P+ 
Sbjct:   227 RSTNLDLIYGLPKQTAVTFAQTLQQVLTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAA 286

Query:   824 DEN-AVMQDKITSLLKNNY 841
             +E  A++Q  IT+L    Y
Sbjct:   287 EEKLAILQQTITTLTGAGY 305


>TIGR_CMR|VC_0116 [details] [associations]
            symbol:VC_0116 "oxygen-independent coproporphyrinogen III
            oxidase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006779 GO:GO:0051536
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
            OMA:HILNLMC ProtClustDB:PRK09249 InterPro:IPR010723 Pfam:PF06969
            TIGRFAMs:TIGR00538 HSSP:P32131 PIR:B82362 RefSeq:NP_229775.1
            ProteinModelPortal:Q9KVM5 SMR:Q9KVM5 DNASU:2614871 GeneID:2614871
            KEGG:vch:VC0116 PATRIC:20079276 Uniprot:Q9KVM5
        Length = 480

 Score = 216 (81.1 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 53/199 (26%), Positives = 91/199 (45%)

Query:   647 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSIT 706
             +YL+ L  ++     +++ R +  +  GGGTP+ +++  +                  I+
Sbjct:   107 EYLDVLEHEIRQRASLLIGRNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFADEAEIS 166

Query:   707 LEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 765
             +E +P   ++E        G NR+SIG+Q FN +   ++ R  D +     +E AKQ  F
Sbjct:   167 IEIDPREIQLEVLDHLRQEGFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLVERAKQLGF 226

Query:   766 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSN 823
              + NLDLIY LP QT       L   +   P  LS+++    P  +    K     +P+ 
Sbjct:   227 RSTNLDLIYGLPKQTAVTFAQTLQQVLTMQPGRLSVFNYAHMPQLFAAQRKIKEADLPAA 286

Query:   824 DEN-AVMQDKITSLLKNNY 841
             +E  A++Q  IT+L    Y
Sbjct:   287 EEKLAILQQTITTLTGAGY 305


>UNIPROTKB|Q607L4 [details] [associations]
            symbol:MCA1745 "tRNA-dihydrouridine synthase"
            species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004652
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
            RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
            KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
        Length = 327

 Score = 209 (78.6 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 70/240 (29%), Positives = 116/240 (48%)

Query:    13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQ-AILGNKKHCL--DFNAEEHPIAFQ 69
             + +APM  +TD   R   RQ        +EM +   A+   +K  L  D   E  PI+ Q
Sbjct:    12 VILAPMAGVTDLPFRRLCRQFGA-GLAVSEMISASPALQATRKSRLRQDHRGEPGPISVQ 70

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
             +   +P+++A++A+     G D I++N GCP+ +V N   G+ L+    LV++ ++A+  
Sbjct:    71 IVGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALLRDEKLVANILEAVVQ 130

Query:   130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIP 188
             +V + +T+K R G D   S + V   +G ++ SAG R   VH R          +     
Sbjct:   131 AVPVPVTLKIRTGWDSA-SRNAVS--IGKIAESAGIRALTVHGRTRACGFAGAAE----- 182

Query:   189 ILKYNFVYNLKKDFPELEIIINGGIKT--KKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 246
                Y+ +  +KK    + +I NG I +  K E  L     D VM+GR A+  P+L+   D
Sbjct:   183 ---YSTITEVKKAIG-IPVIANGDIDSPGKAEAVLRSTGADAVMIGRGAWGRPWLLREID 238


>TIGR_CMR|ECH_0758 [details] [associations]
            symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
            "tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
            GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
            ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
            KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
            BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
        Length = 317

 Score = 207 (77.9 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 61/233 (26%), Positives = 114/233 (48%)

Query:    13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD 72
             + +APM  +TD   R   + +     L +EM  ++A++   K  L  +  +   A Q+  
Sbjct:    12 VILAPMSGVTDFPFRYLVKSLGA-GLLVSEMIASRAMIIQTKQSLQKSQIQINTAVQLAG 70

Query:    73 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 132
              +P  +A +AK+ +  G   I++N GCP  +V N + G+ LM      +  ++++  +V+
Sbjct:    71 CDPTIMADAAKLNEDMGAQIIDINFGCPVKKVVNSYAGSALMKDETTAAKILESVVKAVK 130

Query:   133 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 192
             I +T+K R G D+ N+ +  +         G +   +H R    +    K + K      
Sbjct:   131 IPVTLKMRTGWDN-NNLNSPK-LAKIAEETGIKMITIHGRTR-TQMFTGKADWK------ 181

Query:   193 NFVYNLKKDFPELEIIINGGIKTKKEIDLHL--NYIDGVMLGREAYKNPFLMS 243
              F+ N+KK   ++ +I+NG IK   +I   L  +  DG+M+GR AY  P+ ++
Sbjct:   182 -FIRNIKKCV-KIPVIVNGDIKNLNDIKTSLEESQADGIMIGRGAYGKPWFIN 232


>TIGR_CMR|SO_3466 [details] [associations]
            symbol:SO_3466 "6,7-dimethyl-8-ribityllumazine synthase"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016740 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0009231
            eggNOG:COG0054 KO:K00794 GO:GO:0009349 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114 OMA:GRFNSFI
            HOGENOM:HOG000229249 ProtClustDB:PRK00061 RefSeq:NP_719015.1
            ProteinModelPortal:Q8EBP3 SMR:Q8EBP3 GeneID:1171142
            KEGG:son:SO_3466 PATRIC:23526628 Uniprot:Q8EBP3
        Length = 158

 Score = 191 (72.3 bits), Expect = 8.7e-14, P = 8.7e-14
 Identities = 37/90 (41%), Positives = 60/90 (66%)

Query:   419 RAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIM 478
             +  ++NI  + VPGA+E+PLA + +    KF+ +IA+G +IRG T HF+ +A E    + 
Sbjct:    43 QVSDENITVVRVPGAVELPLAARRVAASGKFDGIIALGAVIRGGTPHFDFVAGECNKGLA 102

Query:   479 QISIKNNIPIINAILTTETIEQANSRILTK 508
             QI+++ ++P+   +LTT+TIEQA  R  TK
Sbjct:   103 QIALEFDLPVAFGVLTTDTIEQAIERSGTK 132


>UNIPROTKB|Q81VW4 [details] [associations]
            symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
            "Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
            InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
            IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
            GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
            ProtClustDB:CLSK872617 Uniprot:Q81VW4
        Length = 339

 Score = 200 (75.5 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 70/270 (25%), Positives = 131/270 (48%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDF---NAEEHPI 66
             K  + +APM  + +   R+  ++      +  EM + +AIL N K  LD    +  E P+
Sbjct:    17 KNPVVLAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILLNNKRTLDMLYIDEREKPL 75

Query:    67 AFQVGDNEPKKLAKSAKIIQKWGY-DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
             + Q+   E + L  +AK + ++   D I++N GCP  ++     GA  +  P  + + + 
Sbjct:    76 SLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVA 135

Query:   126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
             A+ D+VE  +TVK RIG D+   + F  +    V  AG +   VH R   ++    K + 
Sbjct:   136 AVVDAVEKPVTVKMRIGWDE--DHIFAIENAKAVERAGGQVVAVHGRTR-VQMYEGKAD- 191

Query:   186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMS 243
                   ++ +  +K+    + +I NG + T ++    L+ I  DGVM+GR A  +P+++ 
Sbjct:   192 ------WDIIKQVKQAV-NIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIY 244

Query:   244 NFDLNYYSN---LPQYKIPTRIDI--INLD 268
                + Y      +P+  +  +ID+  ++LD
Sbjct:   245 R-TVKYLETGELMPEPTVREKIDVCMLHLD 273


>TIGR_CMR|BA_0075 [details] [associations]
            symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003824
            "catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004652
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
            TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
            ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
            EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
            PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
        Length = 339

 Score = 200 (75.5 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 70/270 (25%), Positives = 131/270 (48%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDF---NAEEHPI 66
             K  + +APM  + +   R+  ++      +  EM + +AIL N K  LD    +  E P+
Sbjct:    17 KNPVVLAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILLNNKRTLDMLYIDEREKPL 75

Query:    67 AFQVGDNEPKKLAKSAKIIQKWGY-DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK 125
             + Q+   E + L  +AK + ++   D I++N GCP  ++     GA  +  P  + + + 
Sbjct:    76 SLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVA 135

Query:   126 AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
             A+ D+VE  +TVK RIG D+   + F  +    V  AG +   VH R   ++    K + 
Sbjct:   136 AVVDAVEKPVTVKMRIGWDE--DHIFAIENAKAVERAGGQVVAVHGRTR-VQMYEGKAD- 191

Query:   186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMS 243
                   ++ +  +K+    + +I NG + T ++    L+ I  DGVM+GR A  +P+++ 
Sbjct:   192 ------WDIIKQVKQAV-NIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIY 244

Query:   244 NFDLNYYSN---LPQYKIPTRIDI--INLD 268
                + Y      +P+  +  +ID+  ++LD
Sbjct:   245 R-TVKYLETGELMPEPTVREKIDVCMLHLD 273


>TIGR_CMR|NSE_0373 [details] [associations]
            symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
            "tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
            GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
            ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
            KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
            ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
            Uniprot:Q2GE34
        Length = 331

 Score = 199 (75.1 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 80/322 (24%), Positives = 145/322 (45%)

Query:     1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCL--- 57
             +N+ N+  +   + +APM  +TD   R   +       + +EM  ++A++   K  +   
Sbjct:     3 LNLANN-ISIDNVILAPMSGVTDMPYRDLVKSFGA-GLVVSEMIASRAMILKTKDTMKKV 60

Query:    58 DFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP 117
               +  E   A Q+   EP  +A++AKI +  G   I++N GCP  +V NG+ G+ LM   
Sbjct:    61 SLSPREDITAIQLAGFEPDVMAEAAKINEDMGAKIIDINFGCPVKKVVNGYAGSYLMKDE 120

Query:   118 LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
                +  ++A   +V+I +T+K R G D+ N  +  +         G +   +H R    +
Sbjct:   121 CHAAKILEATVKAVKIPVTLKMRTGWDE-NHRNAPK-LAKIAEDLGIKMITIHGRTR-AQ 177

Query:   178 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL--NYIDGVMLGREA 235
                 K +       + F+  +K    ++ +I NG IKT ++ +  L  +  DG+M+GR A
Sbjct:   178 MYKGKSD-------WQFIRTVKNTV-KIPVIANGDIKTYEDAERALVESGADGIMIGRGA 229

Query:   236 YKNPFLMSNFDLNYYSN-------LPQYKIPTRIDIINLDSENRENEGDIILSSDFVTPN 288
             Y  P+ + N  L++           PQ K+P  +  I+    +   E  I ++   +   
Sbjct:   230 YGKPWSIRNM-LHFLRTGKKLQEPTPQEKLPIILQHISSIFSHYGTEMGIGIARKHILWY 288

Query:   289 AINFM-SKYARGLICM-TLTEK 308
             + N+  S   R  IC  T  EK
Sbjct:   289 SANYKNSAEFRQQICQETCVEK 310


>TIGR_CMR|GSU_1691 [details] [associations]
            symbol:GSU_1691 "6,7-dimethyl-8-ribityllumazine synthase"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016740 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009231
            eggNOG:COG0054 HOGENOM:HOG000229253 KO:K00794 GO:GO:0009349
            Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 OMA:GRFNSFI ProtClustDB:PRK00061
            RefSeq:NP_952742.1 ProteinModelPortal:P61723 SMR:P61723
            GeneID:2687086 KEGG:gsu:GSU1691 PATRIC:22026231
            BioCyc:GSUL243231:GH27-1721-MONOMER Uniprot:P61723
        Length = 155

 Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query:   428 ISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 487
             + VPGA EIPL  + ++Q   ++ +I +G +IRG T HF+ +A E    I  +S+   +P
Sbjct:    52 VRVPGAFEIPLTAQKLVQKGNYDAVICLGAVIRGSTPHFDYVAAEVSKGIAHVSLATGVP 111

Query:   488 IINAILTTETIEQANSRILTK 508
             ++  +LTT+TIEQA  R  TK
Sbjct:   112 VVFGVLTTDTIEQAIERAGTK 132


>CGD|CAL0003746 [details] [associations]
            symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
            EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
            RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
            GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
            KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
        Length = 339

 Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 68/243 (27%), Positives = 112/243 (46%)

Query:    24 RHCRMFHRQITRY---SWLYTEMFTTQAILGNK-KHCLDF--NAEEHPIAFQVGDNEPKK 77
             R+ ++  R++ R+     +YT M   +  + N+     DF  N  +  +  QVG N    
Sbjct:    35 RYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCVIVQVGVNNVDD 94

Query:    78 LAKSAKIIQKWGYDEINLNCGCP-SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 136
               K  ++I  +  D I +NCGCP   +V+ G  GA LM+ P LV++ IK  +D     I 
Sbjct:    95 FMKFIEMIHPF-VDGIGINCGCPIKEQVREGI-GAALMSDPDLVAELIKTAKDKYGDSIC 152

Query:   137 VKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 195
             +  +I I  DIN      DFV  V  AG  T  VH R       N + +  +P+   + +
Sbjct:   153 IDTKIRIHRDINQ---TIDFVNKVVEAGTDTLTVHGRTK-----NTRSS--VPV-NLDAI 201

Query:   196 YNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL 253
               ++++   + +I NG   T  +    ++Y  +DGVM  R    NP L +  D   +S +
Sbjct:   202 KIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTGLDKTPWSAV 261

Query:   254 PQY 256
               +
Sbjct:   262 EMF 264


>TIGR_CMR|CHY_1472 [details] [associations]
            symbol:CHY_1472 "6,7-dimethyl-8-ribityllumazine synthase"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000906 "6,7-dimethyl-8-ribityllumazine synthase activity"
            evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
            evidence=ISS] HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885
            UniPathway:UPA00275 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0016740 GO:GO:0009231 eggNOG:COG0054 KO:K00794 GO:GO:0009349
            Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 OMA:GRFNSFI HOGENOM:HOG000229249
            RefSeq:YP_360304.1 ProteinModelPortal:Q3AC30 SMR:Q3AC30
            STRING:Q3AC30 GeneID:3727825 KEGG:chy:CHY_1472 PATRIC:21276075
            BioCyc:CHYD246194:GJCN-1471-MONOMER Uniprot:Q3AC30
        Length = 152

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 39/93 (41%), Positives = 54/93 (58%)

Query:   416 TMARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETIS 475
             T    +  NI  I VPGA EIPL  K  +  K ++ +I +G +IRG T HF+ +A E   
Sbjct:    39 TRHEVENTNIDVIWVPGAFEIPLVAKRAVH-KDYDAIICLGAVIRGATPHFDYVAAEVAK 97

Query:   476 NIMQISIKNNIPIINAILTTETIEQANSRILTK 508
              I  + ++ N P+I  +LTT+TIEQA  R  TK
Sbjct:    98 GIAAVGLEANKPVIFGVLTTDTIEQAIERAGTK 130


>TIGR_CMR|CPS_1531 [details] [associations]
            symbol:CPS_1531 "6,7-dimethyl-8-ribityllumazine synthase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0009231
            "riboflavin biosynthetic process" evidence=ISS] HAMAP:MF_00178
            InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275 GO:GO:0016740
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009231
            eggNOG:COG0054 KO:K00794 GO:GO:0009349 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114 OMA:GRFNSFI
            HOGENOM:HOG000229249 ProtClustDB:PRK00061 RefSeq:YP_268273.1
            HSSP:Q9UUB1 ProteinModelPortal:Q485J2 SMR:Q485J2 STRING:Q485J2
            GeneID:3519446 KEGG:cps:CPS_1531 PATRIC:21466269
            BioCyc:CPSY167879:GI48-1612-MONOMER Uniprot:Q485J2
        Length = 154

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 35/87 (40%), Positives = 58/87 (66%)

Query:   422 EKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQIS 481
             +++I  + VPGA E+PLA K I +  + + +IAIG +IRG T HF+ +A E+   + Q+ 
Sbjct:    46 DEDITIVRVPGAYELPLAAKKIAKKGEADAIIAIGAVIRGGTPHFDFVAGESNKGLAQVC 105

Query:   482 IKNNIPIINAILTTETIEQANSRILTK 508
             +++ IP+   ++TT++IEQA  R  TK
Sbjct:   106 LESEIPVSFGVITTDSIEQAIERAGTK 132


>ZFIN|ZDB-GENE-040801-233 [details] [associations]
            symbol:dus4l "dihydrouridine synthase 4-like (S.
            cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
            dinucleotide binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
            activity" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016491 "oxidoreductase activity" evidence=IEA]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
            HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
            GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
            RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
            GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
            Uniprot:Q5RIX6
        Length = 307

 Score = 193 (73.0 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 54/192 (28%), Positives = 93/192 (48%)

Query:    60 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
             N  + P+  Q    + + LA +A ++  +  D ++LNCGCP     +  +GA L+ KP L
Sbjct:    67 NKNDRPLIVQFAAKDAQTLADAACVVSPFS-DGVDLNCGCPQRWAMSEGYGACLINKPEL 125

Query:   120 VSDCIKAMRDSVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 176
             V D ++ +R+ ++     +++K RI  D   + D  +     V +AG     VH R A  
Sbjct:   126 VKDMVRHVRNQIDNPNYAVSIKIRIHKDVRQTVDLCQK----VEAAGVSYITVHGRTAI- 180

Query:   177 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL--HLNYIDGVMLGRE 234
                     R  P+  Y+ +  +K D   + +I NG IK+ ++++    L  +DGVM  R 
Sbjct:   181 -------ERHQPV-HYDTIKTIK-DSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARG 231

Query:   235 AYKNPFLMSNFD 246
                NP + S F+
Sbjct:   232 LLSNPAMFSGFE 243


>UNIPROTKB|P61714 [details] [associations]
            symbol:ribE "RibE" species:83333 "Escherichia coli K-12"
            [GO:0009349 "riboflavin synthase complex" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0009231 "riboflavin
            biosynthetic process" evidence=IEA] [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=IDA]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0016740 EMBL:U82664 GO:GO:0009231
            EMBL:X64395 eggNOG:COG0054 KO:K00794 GO:GO:0009349 GO:GO:0000906
            Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 BRENDA:2.5.1.9 ProtClustDB:PRK00061 PIR:S26202
            RefSeq:NP_414949.1 RefSeq:YP_488707.1 ProteinModelPortal:P61714
            SMR:P61714 IntAct:P61714 MINT:MINT-1225919 SWISS-2DPAGE:P61714
            PaxDb:P61714 PRIDE:P61714 EnsemblBacteria:EBESCT00000003525
            EnsemblBacteria:EBESCT00000014873 GeneID:12930511 GeneID:946453
            KEGG:ecj:Y75_p0403 KEGG:eco:b0415 PATRIC:32115979 EchoBASE:EB1298
            EcoGene:EG11322 HOGENOM:HOG000229250 OMA:TALEMVS
            BioCyc:EcoCyc:LUMAZINESYN-MONOMER BioCyc:ECOL316407:JW0405-MONOMER
            BioCyc:MetaCyc:LUMAZINESYN-MONOMER Genevestigator:P61714
            Uniprot:P61714
        Length = 156

 Score = 175 (66.7 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 35/92 (38%), Positives = 58/92 (63%)

Query:   417 MARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISN 476
             + + +++NI  + VPGA E+PLA   + +  K++ +IA+G +IRG T HFE +A    + 
Sbjct:    41 IGQVKDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNG 100

Query:   477 IMQISIKNNIPIINAILTTETIEQANSRILTK 508
             +  ++  + IP+   +LTTE+IEQA  R  TK
Sbjct:   101 LAHVAQDSEIPVAFGVLTTESIEQAIERAGTK 132


>TIGR_CMR|SO_3465 [details] [associations]
            symbol:SO_3465 "N utilization substance protein B"
            species:211586 "Shewanella oneidensis MR-1" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR
            GO:GO:0006353 eggNOG:COG0781 KO:K03625 ProtClustDB:PRK00202
            Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
            TIGRFAMs:TIGR01951 HOGENOM:HOG000281868 OMA:IPYKVVI
            RefSeq:NP_719014.1 ProteinModelPortal:Q8EBP4 SMR:Q8EBP4
            GeneID:1171141 KEGG:son:SO_3465 PATRIC:23526626 Uniprot:Q8EBP4
        Length = 134

 Score = 175 (66.7 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 41/122 (33%), Positives = 63/122 (51%)

Query:   532 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYD 591
             R +AR  A+Q IY W  +  ++  +E       +   VD  YF  +  GV      L   
Sbjct:     6 RRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFAGVATKKTQLDEL 65

Query:   592 LSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEA 651
             +   +DR I+E+S +E  ++ +  YEL     +P+KV INEAIEL K+FG  +  K++  
Sbjct:    66 IIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGADESHKFVNG 125

Query:   652 LL 653
             LL
Sbjct:   126 LL 127


>DICTYBASE|DDB_G0278803 [details] [associations]
            symbol:dus1l "tRNA-dihydrouridine synthase 1-like
            protein" species:44689 "Dictyostelium discoideum" [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
            "tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
            evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
            GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
            eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
            RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
            EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
            OMA:QIARRGN Uniprot:Q54XQ6
        Length = 435

 Score = 194 (73.4 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 63/250 (25%), Positives = 115/250 (46%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNA---EEHPIAF 68
             K ++APM++ T    RM  R+      +YT MF ++     K +  D+ +   E+ P+  
Sbjct:    53 KKTVAPMVDHTFLAFRMLCRKYGA-DMVYTPMFHSKNFATCKTYRRDYWSTCPEDRPLVV 111

Query:    69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             Q   NEP+ + K+AK I+    D I+LN GCP    + G +G+ L+ KP ++   ++ + 
Sbjct:   112 QFCGNEPEWVVKAAKYIEDH-CDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQELH 170

Query:   129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
               +++ I  K R+ + +++  D ++     +  AGC+   +H R    K  N        
Sbjct:   171 KHIKVPIFCKIRL-LPNLD--DTIK-LALQLQEAGCQLLTIHGRTKEQKGHNSG------ 220

Query:   189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 246
             I  +  +  +++    + +I NG +   ++ID  L     DGVM       NP   S   
Sbjct:   221 IANWKAIRTIREQL-SIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLK 279

Query:   247 LNYYSNLPQY 256
             +  Y    +Y
Sbjct:   280 VPIYQVAREY 289


>UNIPROTKB|O95620 [details] [associations]
            symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
            [NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
            EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
            RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
            SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
            Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
            KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
            HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
            PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
            OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
            NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
            Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
        Length = 317

 Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 66/242 (27%), Positives = 114/242 (47%)

Query:    16 APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQ 69
             APM+    R+ ++  R + R YS    YT M      + + K    +F  N  + P+  Q
Sbjct:    32 APMV----RYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+ + L+ +A+I+  +  + I++NCGCP        +GA L+ KP LV D +K +R+
Sbjct:    88 FAANDARLLSDAARIVCPYA-NGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRN 146

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              VE     +++K RI  DD+       D      + G     VH R A        + R 
Sbjct:   147 QVETPGFSVSIKIRIH-DDLKR---TVDLCQKAEATGVSWITVHGRTA--------EERH 194

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSN 244
              P+  Y+ +  +K++   + +I NG I++ KE +    +   DGVM+ R    NP + + 
Sbjct:   195 QPV-HYDSIKIIKENM-SIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAG 252

Query:   245 FD 246
             ++
Sbjct:   253 YE 254


>UNIPROTKB|E2RRJ8 [details] [associations]
            symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
            GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
            Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
            Uniprot:E2RRJ8
        Length = 317

 Score = 187 (70.9 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 67/242 (27%), Positives = 110/242 (45%)

Query:    16 APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQ 69
             APM+    R+ ++  R + R Y     YT M      + + K    +F  N  + P+  Q
Sbjct:    32 APMV----RYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQ 87

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+ + L+ +A+I+  +  + I++NCGCP        +GA L+ KP LV D +K +R+
Sbjct:    88 FAANDARLLSDAARIVCPYA-NGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRN 146

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              VE     +++K RI  D   + D  R    T    G     VH R    ++  P     
Sbjct:   147 QVENPRFSVSIKIRIHDDLTRTIDLCRKAEAT----GVSWITVHGRTVE-ERHQPVHYEA 201

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSN 244
             I I+K N           + +I NG I++ KE +   H+   DGVM+ R    NP + + 
Sbjct:   202 IKIIKENM---------SIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAG 252

Query:   245 FD 246
             ++
Sbjct:   253 YN 254


>UNIPROTKB|P32131 [details] [associations]
            symbol:hemN "coproporphyrinogen III dehydrogenase"
            species:83333 "Escherichia coli K-12" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=IEA] [GO:0019353
            "protoporphyrinogen IX biosynthetic process from glutamate"
            evidence=IGI] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0051989 "coproporphyrinogen dehydrogenase
            activity" evidence=IEA;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
            binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 UniPathway:UPA00251 GO:GO:0005737
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 EMBL:L19201
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0019353 GO:GO:0004109
            EMBL:D16509 EMBL:X82073 RefSeq:NP_418303.2 RefSeq:YP_491583.1
            PDB:1OLT PDBsum:1OLT ProteinModelPortal:P32131 SMR:P32131
            DIP:DIP-9887N IntAct:P32131 PRIDE:P32131
            EnsemblBacteria:EBESCT00000002593 EnsemblBacteria:EBESCT00000015724
            GeneID:12933633 GeneID:948362 KEGG:ecj:Y75_p3319 KEGG:eco:b3867
            PATRIC:32123235 EchoBASE:EB1782 EcoGene:EG11836 eggNOG:COG0635
            HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
            BioCyc:EcoCyc:HEMN-MONOMER BioCyc:ECOL316407:JW3838-MONOMER
            BioCyc:MetaCyc:HEMN-MONOMER EvolutionaryTrace:P32131
            Genevestigator:P32131 GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969
            TIGRFAMs:TIGR00538 Uniprot:P32131
        Length = 457

 Score = 198 (74.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 49/199 (24%), Positives = 89/199 (44%)

Query:   647 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSIT 706
             +YL+AL  ++    P+   R +  +  GGGTP+ ++   +                  I+
Sbjct:    84 QYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEIS 143

Query:   707 LEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 765
             +E +P   E++        G NRLS+G+Q FN +   ++ R  D +     +  A++  F
Sbjct:   144 IEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGF 203

Query:   766 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSN 823
              + N+DLIY LP QT       L    + +P  LS+++    P  +    K     +PS 
Sbjct:   204 TSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSP 263

Query:   824 DENA-VMQDKITSLLKNNY 841
              +   ++Q+ I  L ++ Y
Sbjct:   264 QQKLDILQETIAFLTQSGY 282

 Score = 39 (18.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 27/120 (22%), Positives = 55/120 (45%)

Query:   847 ISAYSKTG--Y-ESQHNLN-YWKFGDYLGNSIAKSKKIEK---------KCLIFEFMLNA 893
             +SA S  G  Y ++Q  L  Y++  D  GN++ +   + +         K LI  F L+ 
Sbjct:   326 VSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDY 385

Query:   894 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 953
               ++  +  + F +    ++K++    K+    GL+  + K I+ T+ GR  + ++   F
Sbjct:   386 APIEKQWDLH-FADYFAEDLKLLAPLAKD----GLVDVDEKGIQVTAKGRLLIRNICMCF 440


>UNIPROTKB|F1NHN2 [details] [associations]
            symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
            "Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
            EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
            Uniprot:F1NHN2
        Length = 307

 Score = 183 (69.5 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 64/242 (26%), Positives = 111/242 (45%)

Query:    16 APMMNLTDRHCRM-FHRQITRYSW--LYTEMFTTQAILGNKK-HCLDF--NAEEHPIAFQ 69
             APM+    R+ ++ F   + RY     YT M      + + K    +F  N  ++P+  Q
Sbjct:    20 APMV----RYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQ 75

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                 E + L  +A ++  +  D ++LNCGCP        +GA L+ KP LV D ++ +R+
Sbjct:    76 FAAKEAQVLCDAALLVCPFA-DGVDLNCGCPQRWAMAEGYGACLINKPELVRDMVRHVRN 134

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              ++     +++K RI  D   + D  +    T    G     VH RN         + R 
Sbjct:   135 QIDNPRFSVSIKIRIHEDLKKTVDLCKKAEAT----GVSWITVHGRNI--------EERH 182

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL--HLNYIDGVMLGREAYKNPFLMSN 244
              P+  Y+ +  +K+    + ++ NG IKT K+ +   HL   DGVM+ R    NP + + 
Sbjct:   183 QPV-HYDAIKVIKESI-HIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMFAG 240

Query:   245 FD 246
             ++
Sbjct:   241 YE 242


>TIGR_CMR|CPS_4823 [details] [associations]
            symbol:CPS_4823 "oxygen-independent coproporphyrinogen III
            oxidase" species:167879 "Colwellia psychrerythraea 34H" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
            GO:GO:0051536 EMBL:CP000083 GenomeReviews:CP000083_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
            HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
            RefSeq:YP_271462.1 ProteinModelPortal:Q47UR0 SMR:Q47UR0
            STRING:Q47UR0 GeneID:3518837 KEGG:cps:CPS_4823 PATRIC:21472461
            BioCyc:CPSY167879:GI48-4824-MONOMER Uniprot:Q47UR0
        Length = 456

 Score = 188 (71.2 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 56/199 (28%), Positives = 92/199 (46%)

Query:   648 YLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITL 707
             YLE L  ++ L  P+     +  +  GGGTPS ++   +                  +++
Sbjct:    84 YLEYLAQEIALQAPLFEEYTVKQLHWGGGTPSFLTHPQITQLVSLLKEKFNFSDELEMSI 143

Query:   708 EANPSTFEIEKF-HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 765
             E +P   E++   H YS+ G NRLS+G+Q  + K    + R   ++     I+ AK+  F
Sbjct:   144 EIDPREIEMDLAEHLYSL-GFNRLSLGVQDLDLKVQQAINRVQSTEFIGDFIQHAKEVGF 202

Query:   766 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSN 823
              + N+DLIY LP+QTL      L  A ++    +SL+S    P+ +    K     +PS 
Sbjct:   203 KSINIDLIYGLPHQTLENFTKTLVKAHEWDVDRISLFSYAHIPSRFAAQRKLRDEWLPST 262

Query:   824 DEN-AVMQDKITSLLKNNY 841
              E  A+M+  I +L    Y
Sbjct:   263 QEKFALMKLAIETLCDFGY 281


>TIGR_CMR|CBU_0648 [details] [associations]
            symbol:CBU_0648 "6,7-dimethyl-8-ribityllumazine synthase"
            species:227377 "Coxiella burnetii RSA 493" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016740 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0009231
            eggNOG:COG0054 KO:K00794 GO:GO:0009349 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114 OMA:GRFNSFI
            HOGENOM:HOG000229249 ProtClustDB:PRK00061 RefSeq:NP_819678.1
            ProteinModelPortal:Q83DP8 PRIDE:Q83DP8 GeneID:1208533
            KEGG:cbu:CBU_0648 PATRIC:17929975
            BioCyc:CBUR227377:GJ7S-645-MONOMER Uniprot:Q83DP8
        Length = 151

 Score = 166 (63.5 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 40/121 (33%), Positives = 64/121 (52%)

Query:   389 TEAGCDLTKLAGLTPSAVICEILNDDGTMAR-----AQEKNILHISVPGALEIPLALKNI 443
             TE+   L  +      AV  ++LN  G + R      Q   I  + VPGA+EIPL  K +
Sbjct:     2 TESSFKLAIVVSQFNRAVTEKLLN--GVLQRLTELGVQANQIKTVWVPGAVEIPLLAKRL 59

Query:   444 IQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQANS 503
              + K +  ++ +G +IRGET H+  +  +      Q++++  +PII  +LTT T EQA +
Sbjct:    60 AKSKHYQAVVCLGAVIRGETDHYNYVCQQVSFGCQQVALEYEVPIIFGVLTTTTKEQAFA 119

Query:   504 R 504
             R
Sbjct:   120 R 120


>UNIPROTKB|Q9KPU5 [details] [associations]
            symbol:nusB "N utilization substance protein B homolog"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0006353 "DNA-dependent transcription, termination"
            evidence=ISS] HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605
            Pfam:PF01029 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003723 GO:GO:0006353 eggNOG:COG0781 KO:K03625
            ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
            SUPFAM:SSF48013 TIGRFAMs:TIGR01951 OMA:IPYKVVI PIR:B82098
            RefSeq:NP_231898.1 ProteinModelPortal:Q9KPU5 SMR:Q9KPU5
            DNASU:2613189 GeneID:2613189 KEGG:vch:VC2267 PATRIC:20083575
            Uniprot:Q9KPU5
        Length = 156

 Score = 165 (63.1 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 46/136 (33%), Positives = 65/136 (47%)

Query:   532 RHRAREFALQGIYQWLFNNMDVNLIET-------YIKEISNFYK-------VDKKYFYLI 577
             R  AR+FALQ IY W     +V  IE        Y +E     +        D  YF  +
Sbjct:    10 RRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDL 69

Query:   578 LRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELV 637
             L GV+ + N L   L   + R + +L  +E  +L +  YE+     +PYKV+INEAIEL 
Sbjct:    70 LAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELA 129

Query:   638 KSFGNIDEKKYLEALL 653
             K F   D  K++  +L
Sbjct:   130 KVFAAEDSHKFVNGVL 145


>TIGR_CMR|VC_2267 [details] [associations]
            symbol:VC_2267 "N utilization substance protein B"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
            GO:GO:0006353 eggNOG:COG0781 KO:K03625 ProtClustDB:PRK00202
            Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
            TIGRFAMs:TIGR01951 OMA:IPYKVVI PIR:B82098 RefSeq:NP_231898.1
            ProteinModelPortal:Q9KPU5 SMR:Q9KPU5 DNASU:2613189 GeneID:2613189
            KEGG:vch:VC2267 PATRIC:20083575 Uniprot:Q9KPU5
        Length = 156

 Score = 165 (63.1 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 46/136 (33%), Positives = 65/136 (47%)

Query:   532 RHRAREFALQGIYQWLFNNMDVNLIET-------YIKEISNFYK-------VDKKYFYLI 577
             R  AR+FALQ IY W     +V  IE        Y +E     +        D  YF  +
Sbjct:    10 RRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDL 69

Query:   578 LRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELV 637
             L GV+ + N L   L   + R + +L  +E  +L +  YE+     +PYKV+INEAIEL 
Sbjct:    70 LAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELA 129

Query:   638 KSFGNIDEKKYLEALL 653
             K F   D  K++  +L
Sbjct:   130 KVFAAEDSHKFVNGVL 145


>CGD|CAL0004455 [details] [associations]
            symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
            EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
            RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
            GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
            KEGG:cal:CaO19.8982 Uniprot:Q59YC2
        Length = 467

 Score = 185 (70.2 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 74/255 (29%), Positives = 113/255 (44%)

Query:    12 KISIAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHC--LDFNAE-EH 64
             K  +APM++ ++   R+  R    Q+      + ++F TQ    N      LD N + + 
Sbjct:    59 KTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRNSMWTTNLDGNKDLDR 118

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
             P+  Q   N+P  L ++AK+I+    D I+LN GCP    + G +GA LM    LV   I
Sbjct:   119 PLVVQFCANDPDYLLQAAKLIEN-ECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLI 177

Query:   125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK-KLNPKQ 183
             K + D++ I +T K RI  DD   Y+    +   V  AG +   VH R   +K +     
Sbjct:   178 KNLHDNLSIPVTAKIRI-YDD---YEKSLKYAKMVLDAGAQFITVHGRTREMKGQATGLA 233

Query:   184 NRKIPILKYNFVYNLKKDFPELEIII-NGGIKTKKEIDLHLNYI--DGVMLGREAYKNPF 240
             N KI  LKY     L+ + P+ ++   NG I    +I    +    D VM       NP 
Sbjct:   234 NWKI--LKY-----LRDNLPQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNPG 286

Query:   241 LMSNFDLNYYSNLPQ 255
             +    D N     P+
Sbjct:   287 VFWTLDDNKDKQFPR 301


>TIGR_CMR|DET_1187 [details] [associations]
            symbol:DET_1187 "6,7-dimethyl-8-ribityllumazine synthase"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016740 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0009231
            eggNOG:COG0054 KO:K00794 GO:GO:0009349 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114 OMA:GRFNSFI
            HOGENOM:HOG000229249 ProtClustDB:PRK00061 HSSP:Q9UUB1
            RefSeq:YP_181900.1 ProteinModelPortal:Q3Z799 SMR:Q3Z799
            STRING:Q3Z799 GeneID:3229536 KEGG:det:DET1187 PATRIC:21609409
            BioCyc:DETH243164:GJNF-1188-MONOMER Uniprot:Q3Z799
        Length = 155

 Score = 163 (62.4 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 34/100 (34%), Positives = 59/100 (59%)

Query:   430 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 489
             VPGA EIPL  + + +  +++ +I +G +IRG T HFE +++E    I ++ +  ++P+I
Sbjct:    54 VPGAFEIPLVAQKLAKSGRYDAVICLGAVIRGSTPHFEYVSSEVSKGIARVGLDASLPVI 113

Query:   490 NAILTTETIEQANSRILTK-GEIIIFINHKNKSLVNLIKN 528
               ++T ++IEQA  R  TK G        +   + NL+KN
Sbjct:   114 FGVITADSIEQAIERAGTKMGNKGFDAATQAIEVANLMKN 153


>TIGR_CMR|VC_2268 [details] [associations]
            symbol:VC_2268 "6,7-dimethyl-8-ribityllumazine synthase"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009231
            eggNOG:COG0054 KO:K00794 OMA:TLAMIET GO:GO:0009349
            Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 ProtClustDB:PRK00061 PIR:C82098
            RefSeq:NP_231899.2 ProteinModelPortal:Q9KPU4 SMR:Q9KPU4
            DNASU:2613190 GeneID:2613190 KEGG:vch:VC2268 PATRIC:20083577
            Uniprot:Q9KPU4
        Length = 156

 Score = 163 (62.4 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 29/87 (33%), Positives = 55/87 (63%)

Query:   422 EKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQIS 481
             + NI  +  PGA+E+PL  + + +   ++ ++++G +IRG T HF+ + +E    + Q+S
Sbjct:    46 DDNITVVRCPGAVELPLVAQRVAKTGDYDAIVSLGCVIRGGTPHFDYVCSEMNKGLAQVS 105

Query:   482 IKNNIPIINAILTTETIEQANSRILTK 508
             ++ +IP+   +LT +TI+QA  R  TK
Sbjct:   106 LEFSIPVAFGVLTVDTIDQAIERAGTK 132


>UNIPROTKB|D4A0T1 [details] [associations]
            symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
            norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
            OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
            RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
            GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
        Length = 321

 Score = 180 (68.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 65/242 (26%), Positives = 112/242 (46%)

Query:    16 APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQ 69
             APM+    R+ ++  R + R YS    YT M      + + K    +F  N  + P+  Q
Sbjct:    32 APMV----RYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 87

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+ + L+ +A I+  +    I++NCGCP        +GA L+ KP LV D ++ +R+
Sbjct:    88 FAANDARLLSDAALIVCPYA-SGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRN 146

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              VE     +++K RI  D   + D  R     V + G     VH R          + R 
Sbjct:   147 RVENPRFSVSIKIRIHDDLARTIDLCRK----VEATGVSWITVHGRTV--------EERH 194

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSN 244
              P+  Y+ +  +K++   + I+ NG I++ KE +    +   DGVM+ R    NP + + 
Sbjct:   195 QPV-HYDAIKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAG 252

Query:   245 FD 246
             ++
Sbjct:   253 YE 254


>RGD|1311445 [details] [associations]
            symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
            species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
            dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            IPI:IPI00914747 ProteinModelPortal:D4A3L7
            Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
            Uniprot:D4A3L7
        Length = 324

 Score = 180 (68.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 65/242 (26%), Positives = 112/242 (46%)

Query:    16 APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQ 69
             APM+    R+ ++  R + R YS    YT M      + + K    +F  N  + P+  Q
Sbjct:    32 APMV----RYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 87

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+ + L+ +A I+  +    I++NCGCP        +GA L+ KP LV D ++ +R+
Sbjct:    88 FAANDARLLSDAALIVCPYA-SGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRN 146

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              VE     +++K RI  D   + D  R     V + G     VH R          + R 
Sbjct:   147 RVENPRFSVSIKIRIHDDLARTIDLCRK----VEATGVSWITVHGRTV--------EERH 194

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSN 244
              P+  Y+ +  +K++   + I+ NG I++ KE +    +   DGVM+ R    NP + + 
Sbjct:   195 QPV-HYDAIKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAG 252

Query:   245 FD 246
             ++
Sbjct:   253 YE 254


>POMBASE|SPBC36B7.04 [details] [associations]
            symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
            [GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
            [GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
            GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
            GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
            KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
            ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
            GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
            NextBio:20802162 Uniprot:Q9HGN6
        Length = 399

 Score = 182 (69.1 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 61/241 (25%), Positives = 107/241 (44%)

Query:     6 SKYNKRKISIAPMMNLTDRHCRMFHRQITR---YSWLY-TEMFTTQAILGNKKHCLDFNA 61
             +K  + K  +APM++ ++   R+  R+      YS ++ + +F       NK        
Sbjct:    13 NKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIP 72

Query:    62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 121
             EE P+  Q   N+P+ + K+AKI   +  D +++N GCP    + G +G+ L     L+ 
Sbjct:    73 EERPLIIQFCGNDPEIMLKAAKIAAPY-CDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131

Query:   122 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
               I  +   + I +T K RI  D   + D+ +     +  AG     VH R      L  
Sbjct:   132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAK----MILKAGASILAVHGR------LRE 181

Query:   182 KQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKN 238
             ++     I  +  +  L+K+ P E  +  NG I   ++ID  + Y  +DGV+    +  N
Sbjct:   182 QKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYN 241

Query:   239 P 239
             P
Sbjct:   242 P 242


>TIGR_CMR|NSE_0401 [details] [associations]
            symbol:NSE_0401 "6,7-dimethyl-8-ribityllumazine synthase"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016874 GO:GO:0016740 GO:GO:0009231 EMBL:CP000237
            GenomeReviews:CP000237_GR eggNOG:COG0054 KO:K00794 GO:GO:0009349
            GO:GO:0000906 Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 HOGENOM:HOG000229249 RefSeq:YP_506288.1
            ProteinModelPortal:Q2GE08 STRING:Q2GE08 GeneID:3931560
            KEGG:nse:NSE_0401 PATRIC:22680863 OMA:LTMIELK
            ProtClustDB:CLSK2528070 BioCyc:NSEN222891:GHFU-424-MONOMER
            Uniprot:Q2GE08
        Length = 149

 Score = 160 (61.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 41/133 (30%), Positives = 70/133 (52%)

Query:   407 ICEILNDDGTM-ARAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYH 465
             IC++L        + Q      + VPGA E+P AL NI+  K F   + +G I++  T H
Sbjct:    16 ICKVLYKTAAKHLKQQGVACKSVYVPGAFELPTAL-NILHSKDFAGYVILGCIVKSGTPH 74

Query:   466 FELIANETISNIMQISIKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNKSLVNL 525
             F+ +++     IM ++IKNN+ I   ++T   +EQAN R ++ G  I  +N    +++ L
Sbjct:    75 FDYVSSAACRGIMDVAIKNNLAIGFGVITANNMEQANERSVSYG--IAAVN-ACMAMIKL 131

Query:   526 IKNKTPRHRAREF 538
              K ++P     +F
Sbjct:   132 -KERSPTLSEEDF 143


>WB|WBGene00016674 [details] [associations]
            symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
            [GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
            GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
            RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
            STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
            KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
            InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
        Length = 284

 Score = 175 (66.7 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 65/237 (27%), Positives = 111/237 (46%)

Query:    24 RHCRMFHRQITR-YSW--LYTEMFTTQAILGNKKHC----LDFNAEEHPIAFQVGDNEPK 76
             R+ ++  RQ+ R Y     +T M   +  + ++K C    L     + P+  Q   ++P 
Sbjct:     3 RYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEK-CRSSELSVCEGDSPLIVQFATDDPF 61

Query:    77 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EI 133
              L+++A+++ K     ++LNCGCP + V++  FG+ L++KP L++D ++  R  +   + 
Sbjct:    62 VLSEAAEMVYKCSTG-VDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120

Query:   134 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK-IPILKY 192
              +++K RI  D   + D  R       +AG     VH R        P Q  + I I   
Sbjct:   121 SVSLKIRINHDIEKTVDLCRK----AEAAGVTHLTVHGRT-------PSQRAEPIDIQAL 169

Query:   193 NFVYNLKKDFPELEIIINGGIKTKKEIDLHL---NYIDGVMLGREAYKNPFLMSNFD 246
               V    KD   + II NGGI T++E  L L     +DG+M       NP L +  +
Sbjct:   170 RIV----KDSVSVPIIANGGITTREEA-LFLAEQTGVDGIMAANGLLDNPALFAGHE 221


>TIGR_CMR|SPO_2089 [details] [associations]
            symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
            modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
            GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
            ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
        Length = 327

 Score = 177 (67.4 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 64/263 (24%), Positives = 126/263 (47%)

Query:    13 ISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK---KHCLDFNAEEHPIAFQ 69
             + +APM  +TDR  R    +      + +EM  +Q ++  K   +   + +A+    A Q
Sbjct:    14 VILAPMAGITDRPFRDLVMEFGA-GMVVSEMVASQEMVQAKPGVRERAELSADVENTAVQ 72

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
             +   +   +A++A+ +   G   I++N GCP+ +V NG+ G+ L+  P      I+A+  
Sbjct:    73 LAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAVVA 132

Query:   130 SVEIDITVKHRIGIDD--INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
             +V++ +T+K R+G DD  +N+ D  R      + AG R   +H R     +    + R  
Sbjct:   133 AVDVPVTLKTRLGWDDTLMNAPDVAR----RAAEAGVRMVTIHGRT----RCQFYKGRA- 183

Query:   188 PILKYNFVYNLKKDFPELEIIINGGIK---TKKEIDLHLNYIDGVMLGREAYKNPFLMSN 244
                 +  +  +++   ++ +I NG I    T ++  L  +  DGVM+GR A   P+L++ 
Sbjct:   184 ---DWAAIAAVREAV-DVPLIANGDITCAHTARQA-LDRSGADGVMVGRGAQGRPWLLAQ 238

Query:   245 FDLNYYSNLPQYKIPTRIDIINL 267
                  Y   P  ++P   ++ ++
Sbjct:   239 IAHALYGT-PAPEVPQGAELADM 260


>UNIPROTKB|Q8EJR8 [details] [associations]
            symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
            GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
            OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
            KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
            Uniprot:Q8EJR8
        Length = 322

 Score = 175 (66.7 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 57/248 (22%), Positives = 119/248 (47%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRY--SWLYTEMFTTQAILGN---KKHCLDFNAEEH 64
             K ++ +APM  +TD+    F     RY  +   +EM ++   + +    +  +  + EE 
Sbjct:     9 KNQLIVAPMAGVTDQ---AFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMTHSGEEG 65

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
               + Q+   +P+ +A++A+   + G   I++N GCP+ +V     G+ LM  P LV D +
Sbjct:    66 IRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDIL 125

Query:   125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
             +A+  +V++ +T+K R G +  +               G  +  VH R    ++   K N
Sbjct:   126 QAVVAAVDVPVTLKIRTGWEPEHRNGV--QIAQIAEDCGIASLAVHGRT---RQCMYKGN 180

Query:   185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLM 242
              +     Y+ +  +K++   + ++ NG I + ++    L+Y  +D +M+GR A   P++ 
Sbjct:   181 AE-----YDTIKAIKQNV-SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIF 234

Query:   243 SNFDLNYY 250
                ++ +Y
Sbjct:   235 R--EIQHY 240


>TIGR_CMR|SO_0394 [details] [associations]
            symbol:SO_0394 "conserved hypothetical protein"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
            InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
            KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
            KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
            Uniprot:Q8EJR8
        Length = 322

 Score = 175 (66.7 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 57/248 (22%), Positives = 119/248 (47%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRY--SWLYTEMFTTQAILGN---KKHCLDFNAEEH 64
             K ++ +APM  +TD+    F     RY  +   +EM ++   + +    +  +  + EE 
Sbjct:     9 KNQLIVAPMAGVTDQ---AFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMTHSGEEG 65

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
               + Q+   +P+ +A++A+   + G   I++N GCP+ +V     G+ LM  P LV D +
Sbjct:    66 IRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDIL 125

Query:   125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN 184
             +A+  +V++ +T+K R G +  +               G  +  VH R    ++   K N
Sbjct:   126 QAVVAAVDVPVTLKIRTGWEPEHRNGV--QIAQIAEDCGIASLAVHGRT---RQCMYKGN 180

Query:   185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLM 242
              +     Y+ +  +K++   + ++ NG I + ++    L+Y  +D +M+GR A   P++ 
Sbjct:   181 AE-----YDTIKAIKQNV-SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIF 234

Query:   243 SNFDLNYY 250
                ++ +Y
Sbjct:   235 R--EIQHY 240


>MGI|MGI:1919166 [details] [associations]
            symbol:Dus4l "dihydrouridine synthase 4-like (S.
            cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
            "tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
            "flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
            GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
            KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
            IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
            ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
            Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
            UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
            NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
            GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
        Length = 324

 Score = 175 (66.7 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 64/242 (26%), Positives = 112/242 (46%)

Query:    16 APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQ 69
             APM+    R+ ++  R + R YS    YT M      + + K    +F  N  + P+  Q
Sbjct:    32 APMV----RYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 87

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+ + L+ +A ++  +  + I++NCGCP        +GA L+ KP LV D ++ +R+
Sbjct:    88 FAANDARLLSDAALLVCPYA-NGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRN 146

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              VE     +++K RI  D   + D  R    T    G     VH R          + R 
Sbjct:   147 RVESPRFSVSIKIRIHDDLARTIDLCRKAEAT----GVSWITVHGRTV--------EERH 194

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSN 244
              P+  Y+ +  +K++   + I+ NG I++ KE +    +   DGVM+ R    NP + + 
Sbjct:   195 QPV-HYDAIKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAG 252

Query:   245 FD 246
             ++
Sbjct:   253 YE 254


>SGD|S000004545 [details] [associations]
            symbol:DUS1 "Dihydrouridine synthase" species:4932
            "Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
            activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
            dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
            GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
            EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
            GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
            OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
            ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
            MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
            EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
            BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
            GermOnline:YML080W Uniprot:P53759
        Length = 423

 Score = 177 (67.4 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 64/260 (24%), Positives = 121/260 (46%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH------CLDFNAEEHPIAF 68
             +APM++ ++   R+  R+    +  YT M   +    +KK+       LD ++ + P+  
Sbjct:    33 VAPMVDQSELAWRILSRRYGA-TLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLVV 91

Query:    69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             Q   N+P+ L  +AK+++    D ++LN GCP    + G +G+ LM +  L+ + I  + 
Sbjct:    92 QFCANDPEYLLAAAKLVED-KCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLH 150

Query:   129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
              ++++ +T K RI  D   S ++ +     V  AG +   VH R      +  ++ +K  
Sbjct:   151 KNLKVPVTAKIRIFDDCEKSLNYAK----MVLDAGAQFLTVHGR------VREQKGQKTG 200

Query:   189 ILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNF 245
             +  +  +  L+ + P E     NG I   ++I   + +I  D VM       NP +   F
Sbjct:   201 LANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGV---F 257

Query:   246 DLNYYSNLPQYKIPTRIDII 265
             ++    N  + KI  R+D I
Sbjct:   258 NVGQTKN--KEKIFPRVDKI 275


>TAIR|locus:2051739 [details] [associations]
            symbol:COS1 "AT2G44050" species:3702 "Arabidopsis
            thaliana" [GO:0000906 "6,7-dimethyl-8-ribityllumazine synthase
            activity" evidence=IGI;ISS] [GO:0009231 "riboflavin biosynthetic
            process" evidence=IEA;IGI;ISS] [GO:0009349 "riboflavin synthase
            complex" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009867 "jasmonic acid mediated signaling pathway"
            evidence=IGI] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0006007 "glucose catabolic process" evidence=RCA]
            InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275 GO:GO:0009570
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016740 EMBL:AC004005
            GO:GO:0009231 GO:GO:0009867 eggNOG:COG0054 KO:K00794 GO:GO:0009349
            GO:GO:0000906 Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 OMA:GRFNSFI EMBL:AF148649 EMBL:AY050913
            EMBL:AY091343 IPI:IPI00529546 PIR:T00685 RefSeq:NP_181933.1
            UniGene:At.11483 ProteinModelPortal:O80575 SMR:O80575 IntAct:O80575
            STRING:O80575 PaxDb:O80575 PRIDE:O80575 EnsemblPlants:AT2G44050.1
            GeneID:819010 KEGG:ath:AT2G44050 GeneFarm:2212 TAIR:At2g44050
            HOGENOM:HOG000229249 InParanoid:O80575 PhylomeDB:O80575
            ProtClustDB:PLN02404 BioCyc:MetaCyc:AT2G44050-MONOMER
            Genevestigator:O80575 GermOnline:AT2G44050 InterPro:IPR017420
            PIRSF:PIRSF038166 Uniprot:O80575
        Length = 227

 Score = 163 (62.4 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 31/84 (36%), Positives = 55/84 (65%)

Query:   421 QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQI 480
             +E++I  I VPG+ EI +  +N+ +  KF+ ++ IG +IRG+T H++ +AN   S ++  
Sbjct:   116 REEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLCIGAVIRGDTTHYDAVANSAASGVLSA 175

Query:   481 SIKNNIPIINAILTTETIEQANSR 504
             SI + +P I  +LT E ++QA +R
Sbjct:   176 SINSGVPCIFGVLTCEDMDQALNR 199


>UNIPROTKB|Q9KV66 [details] [associations]
            symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
            GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
            RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
            GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
            ProtClustDB:CLSK873929 Uniprot:Q9KV66
        Length = 322

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 62/266 (23%), Positives = 116/266 (43%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYS--WLYTEMFTTQAIL---GNKKHCLDFNAEEH 64
             K  + +APM  +TDR    F     RY      +EM +    L      ++ +    E  
Sbjct:     9 KNNLIVAPMAGVTDRP---FRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESG 65

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
               + Q+  ++P+ +A++A+   + G   I++N GCP+ +V     G+ L+  P ++ D +
Sbjct:    66 IRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDIL 125

Query:   125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQ 183
             KA+ ++V + +T+K R G D  N               G +   +H R  A + K   + 
Sbjct:   126 KAVVNAVNVPVTLKTRTGWDTDNKNCL--SIAQLAEDCGIQALALHGRTRACMYKGEAE- 182

Query:   184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFL 241
                     Y+ +  +K     + +I NG I + ++    L Y   D +M+GR A   P++
Sbjct:   183 --------YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWI 233

Query:   242 MSNFD--LNYYSNLPQYKIPTRIDII 265
                    L + + +P+  I    DI+
Sbjct:   234 FQEIQHFLEHGTTMPELPISEVKDIM 259


>TIGR_CMR|VC_0291 [details] [associations]
            symbol:VC_0291 "NifR3/Smm1 family protein" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004652
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
            DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
            ProtClustDB:CLSK873929 Uniprot:Q9KV66
        Length = 322

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 62/266 (23%), Positives = 116/266 (43%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYS--WLYTEMFTTQAIL---GNKKHCLDFNAEEH 64
             K  + +APM  +TDR    F     RY      +EM +    L      ++ +    E  
Sbjct:     9 KNNLIVAPMAGVTDRP---FRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESG 65

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 124
               + Q+  ++P+ +A++A+   + G   I++N GCP+ +V     G+ L+  P ++ D +
Sbjct:    66 IRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDIL 125

Query:   125 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQ 183
             KA+ ++V + +T+K R G D  N               G +   +H R  A + K   + 
Sbjct:   126 KAVVNAVNVPVTLKTRTGWDTDNKNCL--SIAQLAEDCGIQALALHGRTRACMYKGEAE- 182

Query:   184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFL 241
                     Y+ +  +K     + +I NG I + ++    L Y   D +M+GR A   P++
Sbjct:   183 --------YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWI 233

Query:   242 MSNFD--LNYYSNLPQYKIPTRIDII 265
                    L + + +P+  I    DI+
Sbjct:   234 FQEIQHFLEHGTTMPELPISEVKDIM 259


>POMBASE|SPCC777.15 [details] [associations]
            symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
            evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
            GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
            eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
            KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
            ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
            GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
            NextBio:20800171 Uniprot:O74553
        Length = 326

 Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 65/249 (26%), Positives = 121/249 (48%)

Query:    10 KRKISIA-PMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGNKKHCLDF--NAEE 63
             KR + IA PM+    R+ ++  RQ+ R Y+   +YT M   +  L  K    DF  N  +
Sbjct:    18 KRPVHIAAPMV----RYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFDFSTNDAD 73

Query:    64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN-RVQNGFFGAILMTKPLLVSD 122
               +  Q G ++P  L K+A+++  +  D I +NCGCP    +Q G  G+ L+ +P  V  
Sbjct:    74 ASLILQFGVDDPVILEKAAQLVGPY-VDGIGINCGCPQTWAIQEGI-GSALLDEPEKVHK 131

Query:   123 CIKAMRDSV-EIDIT-VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
              ++A++ ++ E   T VK RI   D+N     R  +  +  +G     VH R        
Sbjct:   132 LVRAVKSTLGESFCTEVKIRIA-KDLNK---TRHLMQVIEKSGADIITVHGRT------- 180

Query:   181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-KKEIDLHLNYID--GVMLGREAYK 237
              +Q+R    +  + +  ++    ++ ++ NG +K+ +K +++   Y +  G+M  R   +
Sbjct:   181 -RQDRSSFPVNLDAIREVRPCV-QIPVVANGDVKSLRKGLEI-AKYTETQGIMSARGLLE 237

Query:   238 NPFLMSNFD 246
             NP L + ++
Sbjct:   238 NPALFAGYE 246


>UNIPROTKB|Q8EFG7 [details] [associations]
            symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
            PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
            GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
            OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
            GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
            ProtClustDB:CLSK906542 Uniprot:Q8EFG7
        Length = 315

 Score = 167 (63.8 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 62/243 (25%), Positives = 108/243 (44%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNK---KHCLD-----FNAE 62
             ++ +APM  + D   R     I  Y  L TE       +L  K   K C +     +   
Sbjct:     2 RVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPS 61

Query:    63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
               P+  Q+   EP  +A++A    + G   ++ N GCP+  V     GA+L+  P  + D
Sbjct:    62 GTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHD 121

Query:   123 CIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
              ++AMR +V  E  +T K R+G +D +   F+ + +  V  AG     +HAR+       
Sbjct:   122 IVRAMRQAVPAEHPVTAKIRLGYEDKSL--FMENALA-VYEAGATELAIHARS------- 171

Query:   181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKN 238
              K +   P   + ++  +++  P + +I NG I  + +    + +   D +M+GR A   
Sbjct:   172 -KVDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISL 229

Query:   239 PFL 241
             P L
Sbjct:   230 PNL 232


>TIGR_CMR|SO_2006 [details] [associations]
            symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
            PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
            GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
            OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
            GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
            ProtClustDB:CLSK906542 Uniprot:Q8EFG7
        Length = 315

 Score = 167 (63.8 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 62/243 (25%), Positives = 108/243 (44%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNK---KHCLD-----FNAE 62
             ++ +APM  + D   R     I  Y  L TE       +L  K   K C +     +   
Sbjct:     2 RVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPS 61

Query:    63 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
               P+  Q+   EP  +A++A    + G   ++ N GCP+  V     GA+L+  P  + D
Sbjct:    62 GTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHD 121

Query:   123 CIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
              ++AMR +V  E  +T K R+G +D +   F+ + +  V  AG     +HAR+       
Sbjct:   122 IVRAMRQAVPAEHPVTAKIRLGYEDKSL--FMENALA-VYEAGATELAIHARS------- 171

Query:   181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKN 238
              K +   P   + ++  +++  P + +I NG I  + +    + +   D +M+GR A   
Sbjct:   172 -KVDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISL 229

Query:   239 PFL 241
             P L
Sbjct:   230 PNL 232


>SGD|S000005503 [details] [associations]
            symbol:RIB4 "Lumazine synthase (DMRL synthase)" species:4932
            "Saccharomyces cerevisiae" [GO:0009231 "riboflavin biosynthetic
            process" evidence=IEA;IMP] [GO:0009349 "riboflavin synthase
            complex" evidence=IEA] [GO:0000906 "6,7-dimethyl-8-ribityllumazine
            synthase activity" evidence=IGI;ISS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0005758 "mitochondrial intermembrane space" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR002180 Pfam:PF00885
            UniPathway:UPA00275 SGD:S000005503 GO:GO:0005634 EMBL:BK006948
            GO:GO:0005758 GO:GO:0016740 GO:GO:0009231 eggNOG:COG0054
            HOGENOM:HOG000229253 KO:K00794 OrthoDB:EOG49S9GR GO:GO:0009349
            GO:GO:0000906 Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 EMBL:Z21620 EMBL:Z74885 EMBL:AY558430 PIR:S61871
            RefSeq:NP_014498.1 PDB:1EJB PDBsum:1EJB ProteinModelPortal:P50861
            SMR:P50861 DIP:DIP-1931N IntAct:P50861 MINT:MINT-397811
            STRING:P50861 PaxDb:P50861 PeptideAtlas:P50861 EnsemblFungi:YOL143C
            GeneID:854022 KEGG:sce:YOL143C CYGD:YOL143c OMA:GRFNSFI
            BioCyc:MetaCyc:YOL143C-MONOMER EvolutionaryTrace:P50861
            NextBio:975556 Genevestigator:P50861 GermOnline:YOL143C
            Uniprot:P50861
        Length = 169

 Score = 148 (57.2 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query:   421 QEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANETIS 475
             +E NI+  +VPG+ E+P   K  +       K  +V+I IGV+I+G T HFE I++ T  
Sbjct:    49 EENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISDSTTH 108

Query:   476 NIMQISIKNNIPIINAILTTETIEQANSR 504
              +M +  K ++P+I  +LT  T EQA +R
Sbjct:   109 ALMNLQEKVDMPVIFGLLTCMTEEQALAR 137


>UNIPROTKB|Q87VS1 [details] [associations]
            symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
            "Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004652
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
            TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
            GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
            ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
            Uniprot:Q87VS1
        Length = 337

 Score = 166 (63.5 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 57/237 (24%), Positives = 108/237 (45%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN--KKHCLDFNA-EEHPIAFQVG 71
             +APM  +TD+  R   RQ+     + +EM T+   L N  K      +A +  P + Q+ 
Sbjct:    17 LAPMAGVTDQPFRQLCRQLGA-GLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPRSVQIA 75

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
               + + +A +A+   + G   I++N GCP+ +V N   G+ L+    LV+D ++A+  +V
Sbjct:    76 GGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVNDILQAVVAAV 135

Query:   132 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 191
             ++ +T+K R G D  N              AG +   VH R         + +      +
Sbjct:   136 DVPVTLKIRTGWDRDNRNGLT--VAKIAEQAGIQALAVHGRT--------RADLYTGEAE 185

Query:   192 YNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 246
             Y+ +  +K+    + +  NG I + ++    L     DG+++GR A   P++    +
Sbjct:   186 YDTIAMIKQAV-SIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFREIE 241


>UNIPROTKB|I3LP14 [details] [associations]
            symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
            Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
        Length = 237

 Score = 159 (61.0 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 60/223 (26%), Positives = 103/223 (46%)

Query:     8 YNKRKISI-APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--N 60
             Y+ + + + APM+    R+ ++  R + R YS    YT M      + + K    +F  N
Sbjct:    25 YSGQLVKVCAPMV----RYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTN 80

Query:    61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
               + P+  Q   N+ + L+ +A+I+  +  + I++NCGCP        +GA L+ KP LV
Sbjct:    81 QGDCPLIVQFAANDARLLSDAARIVCPYA-NGIDINCGCPQRWALAEGYGACLINKPELV 139

Query:   121 SDCIKAMRDSVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
              D +K +R+ VE     +++K RI  D   + D  R    T    G     VH R     
Sbjct:   140 KDMVKQVRNQVENPRFSVSIKIRIHSDLTRTVDLCRKAEAT----GVSWITVHGRTV--- 192

Query:   178 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 220
                  + R  P+  Y  +  +K+    + +I NG I++ KE +
Sbjct:   193 -----EERHQPV-HYEAIKIIKESM-SIPVIANGDIRSLKEAE 228


>FB|FBgn0031238 [details] [associations]
            symbol:CG3645 species:7227 "Drosophila melanogaster"
            [GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
            KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
            RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
            IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
            EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
            KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
            InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
            Uniprot:Q9VPM1
        Length = 505

 Score = 169 (64.5 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 56/244 (22%), Positives = 110/244 (45%)

Query:     2 NMINSKYNKRKISIAPMMNLTDRHCRMFHRQITR---YSWLY-TEMFTTQAILGNKKHCL 57
             N   S     +  +APM++ ++   RM  R+      YS +Y   +F T      +K  L
Sbjct:    19 NFYRSSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKY--RKDAL 76

Query:    58 DFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP 117
                 E+ P+  Q   N+ +++  +A + Q    D +++N GCP    + G +G+ L  + 
Sbjct:    77 QTCPEDRPLIIQFCGNDAQQILDAALLAQDH-CDAVDINLGCPQAIAKRGHYGSFLQDEW 135

Query:   118 LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
              L+++ +  +   + + +T K RI  +D+     +R +   + +AGC+   VH R    K
Sbjct:   136 ELLTEIVSTLHAKLAVPVTCKIRI-FEDLEKT--IR-YAKMLEAAGCQLLTVHGRTREQK 191

Query:   178 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA 235
                P       +  +N++ N+++   ++ ++ NG I    ++   L    +DGVM     
Sbjct:   192 --GPLTG----VANWNYIKNVRQHI-KIPMLANGNILALDDVHRCLTETGVDGVMSAEGN 244

Query:   236 YKNP 239
               NP
Sbjct:   245 LHNP 248


>UNIPROTKB|O53835 [details] [associations]
            symbol:dus "Probable tRNA-dihydrouridine synthase"
            species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
            of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
            RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
            ProteinModelPortal:O53835 SMR:O53835
            EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
            GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
            KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
            TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
            ProtClustDB:CLSK871859 Uniprot:O53835
        Length = 389

 Score = 166 (63.5 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 72/271 (26%), Positives = 120/271 (44%)

Query:    13 ISIAPMMNLTDRHCRMFHRQITR-----YSWLYT-EMFTTQAILGNKK---HCLDFNAEE 63
             + +APM  +T+   R   RQ+ +      S LY  EM T +A++       H   F+A+E
Sbjct:    24 VVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADE 83

Query:    64 HPIAFQVGDNEPKKLAKSAKIIQKWGY-DEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
              P + Q+   +P     +A++I   G  D I++N GCP  +V     GA L  K  L   
Sbjct:    84 SPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQ 143

Query:   123 CIKA-MR--DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKK 178
              + A +R  +  +I +TVK RIGIDD +      D  G ++ A G     +HAR A    
Sbjct:   144 IVAAAVRATEGTDIPVTVKFRIGIDDAHHTHL--D-AGRIAEAEGAAAVALHARTA---- 196

Query:   179 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAY 236
                   R      +  +  LK+    + ++ NG I    +    ++    DGV++GR   
Sbjct:   197 ----AQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252

Query:   237 KNPFLMSNFDLNYYSNLPQYKIPTRIDIINL 267
               P+L +     +  + P    PT  ++ ++
Sbjct:   253 GRPWLFAELSAAFTGS-PAPTPPTLGEVADI 282


>UNIPROTKB|P66034 [details] [associations]
            symbol:ribH "6,7-dimethyl-8-ribityllumazine synthase"
            species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
            evidence=IMP] HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885
            UniPathway:UPA00275 GO:GO:0040007 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0016740
            EMBL:BX842576 GO:GO:0009231 eggNOG:COG0054 HOGENOM:HOG000229253
            KO:K00794 GO:GO:0009349 Gene3D:3.40.50.960 PANTHER:PTHR21058
            SUPFAM:SSF52121 TIGRFAMs:TIGR00114 ProtClustDB:PRK00061 OMA:IVSMESA
            PIR:E70902 RefSeq:NP_215932.1 RefSeq:NP_335910.1
            RefSeq:YP_006514796.1 PDB:1W19 PDB:1W29 PDB:2C92 PDB:2C94 PDB:2C97
            PDB:2C9B PDB:2C9D PDB:2VI5 PDBsum:1W19 PDBsum:1W29 PDBsum:2C92
            PDBsum:2C94 PDBsum:2C97 PDBsum:2C9B PDBsum:2C9D PDBsum:2VI5
            ProteinModelPortal:P66034 SMR:P66034
            EnsemblBacteria:EBMYCT00000003301 EnsemblBacteria:EBMYCT00000072146
            GeneID:13320005 GeneID:886681 GeneID:924512 KEGG:mtc:MT1459
            KEGG:mtu:Rv1416 KEGG:mtv:RVBD_1416 PATRIC:18124978
            TubercuList:Rv1416 BindingDB:P66034 ChEMBL:CHEMBL1075177
            EvolutionaryTrace:P66034 Uniprot:P66034
        Length = 160

 Score = 145 (56.1 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 27/77 (35%), Positives = 49/77 (63%)

Query:   428 ISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 487
             + V GA+EIP+  + +   +  + ++A+GV+IRG+T HF+ + +     + ++S+ ++ P
Sbjct:    54 VRVLGAIEIPVVAQELA--RNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTP 111

Query:   488 IINAILTTETIEQANSR 504
             I N +LTT T EQA  R
Sbjct:   112 IANGVLTTNTEEQALDR 128


>TAIR|locus:2155528 [details] [associations]
            symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
            "regulation of nitrogen utilization" evidence=ISS] [GO:0008033
            "tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
            dinucleotide binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
            HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
            EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
            ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
            EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
            TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
            ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
        Length = 423

 Score = 166 (63.5 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 53/244 (21%), Positives = 113/244 (46%)

Query:     7 KYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHC-LDFNA--EE 63
             K  + K  +APM++ ++   R+  ++    +  YT M  ++     +K+   +F    E+
Sbjct:    84 KLGRPKYIVAPMVDNSELPFRLLCQKYGAQA-AYTPMLHSRIFTETEKYRNQEFTTCKED 142

Query:    64 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
              P+  Q   N+P  L ++AK ++ +  D +++N GCP    + G +GA LM    LV   
Sbjct:   143 RPLFVQFCANDPDTLLEAAKRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 201

Query:   124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
             ++ +  ++ + ++ K RI     N  D ++ +   +  AGC    VH R       + K 
Sbjct:   202 VEKLAQNLNVPVSCKIRIFP---NLEDTLK-YAKMLEDAGCSLLAVHGRTR-----DEKD 252

Query:   184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +K     ++ +  +K     + ++ NG ++  +++D  +    ++GV+      +NP  
Sbjct:   253 GKKFRA-DWSAIKEVKNAM-RIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAA 310

Query:   242 MSNF 245
              + F
Sbjct:   311 FAGF 314


>FB|FBgn0032750 [details] [associations]
            symbol:CG10495 species:7227 "Drosophila melanogaster"
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
            "flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
            "tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
            GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
            UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
            GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
            FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
            GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
        Length = 396

 Score = 165 (63.1 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 60/244 (24%), Positives = 117/244 (47%)

Query:    16 APMMNLTDRHCRMFHRQITRYSWL---YTEMFTTQAILGNKK-HCLDFN--AEEHPIAFQ 69
             APM+    R+ ++  R++ R + +   +T M  + +I  ++K    +F+  A++ P+  Q
Sbjct:    28 APMV----RYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQ 83

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                 +P +   SA++I  +  D I+LNCGCP +      +G  ++ +P LV   ++ +R 
Sbjct:    84 FAAKDPTEFVTSAQLIYPY-VDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRR 142

Query:   130 SV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 187
             ++  +  ++VK R+ +    S     D    + SAG     +H R    K  + K    I
Sbjct:   143 TLPGDFSVSVKMRL-LGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQK--HSKDTLDI 199

Query:   188 PILKYNFVYNLKKDFPELEIIINGGIKTKKEI-DLHLNY-IDGVMLGREAYKNPFLMSNF 245
             P +       +++   ++ +I+NG +++ ++  D+H      GVM  R    NP L   F
Sbjct:   200 PAMS-----QVRQSL-QIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPAL---F 250

Query:   246 DLNY 249
             + NY
Sbjct:   251 NSNY 254


>DICTYBASE|DDB_G0291360 [details] [associations]
            symbol:dus4l "tRNA-dihydrouridine synthase 4-like
            protein" species:44689 "Dictyostelium discoideum" [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
            "tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
            evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
            "oxidoreductase activity" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
            GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
            Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
            PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
            ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
            GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
            Uniprot:Q54ES7
        Length = 344

 Score = 163 (62.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 68/257 (26%), Positives = 110/257 (42%)

Query:     1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSW----LYTEMFTTQAILGNKKHC 56
             M+ INS     KI  APM+    R  R+  R + +  W     YT M        N+   
Sbjct:    47 MDRINSG-EFMKIQ-APMV----RFSRLPFRMLVK-KWGCDITYTPMIMAAEF--NRSEA 97

Query:    57 L---DF--NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGA 111
                 DF  N  + P+  Q G N  ++L  +A+ ++ +    I++NCGCP   V    FGA
Sbjct:    98 ARDSDFTINKLDEPLIVQFGVNNAEELVSAAEKVKDY-CQGIDINCGCPQRWVMKEGFGA 156

Query:   112 ILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA 171
              L+  P  + D +K + + V I I++K R+  D  ++ +  +         G     VH 
Sbjct:   157 NLLLHPERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAK----RAERIGVSWITVHG 212

Query:   172 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGV 229
             R + +K  +P        + Y+ +  L KD   L +  NG + T  + +       ++GV
Sbjct:   213 RTSAMKSSHP--------VDYDAI-KLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGV 263

Query:   230 MLGREAYKNPFLMSNFD 246
             M  R    NP L   +D
Sbjct:   264 MSARGLLTNPALFQGYD 280


>POMBASE|SPBC409.13 [details] [associations]
            symbol:SPBC409.13 "6,7-dimethyl-8-ribityllumazine
            synthase (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000906 "6,7-dimethyl-8-ribityllumazine synthase activity"
            evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=ISO;IDA] [GO:0009231 "riboflavin biosynthetic
            process" evidence=ISO] [GO:0009349 "riboflavin synthase complex"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            PomBase:SPBC409.13 GO:GO:0005634 GO:GO:0005737 GO:GO:0016740
            EMBL:CU329671 GenomeReviews:CU329671_GR DrugBank:DB00140
            GO:GO:0009231 PIR:T40440 RefSeq:NP_595463.1 PDB:1KYV PDB:1KYX
            PDB:1KYY PDB:1KZ1 PDB:1KZ4 PDB:1KZ6 PDB:1KZ9 PDB:2A57 PDB:2A58
            PDB:2A59 PDBsum:1KYV PDBsum:1KYX PDBsum:1KYY PDBsum:1KZ1
            PDBsum:1KZ4 PDBsum:1KZ6 PDBsum:1KZ9 PDBsum:2A57 PDBsum:2A58
            PDBsum:2A59 ProteinModelPortal:Q9UUB1 SMR:Q9UUB1 STRING:Q9UUB1
            PRIDE:Q9UUB1 EnsemblFungi:SPBC409.13.1 GeneID:2541125
            KEGG:spo:SPBC409.13 eggNOG:COG0054 HOGENOM:HOG000229253 KO:K00794
            OMA:TLAMIET OrthoDB:EOG49S9GR EvolutionaryTrace:Q9UUB1
            NextBio:20802238 GO:GO:0009349 GO:GO:0000906 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114 Uniprot:Q9UUB1
        Length = 159

 Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/79 (35%), Positives = 48/79 (60%)

Query:   423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
             +NI   SVPG+ E+P  ++  I    ++ +I IGV+I+G T HFE I+   +  +M++ +
Sbjct:    52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111

Query:   483 KNNIPIINAILTTETIEQA 501
              + +P+I  +LT    EQA
Sbjct:   112 DSGVPVILGLLTVLNEEQA 130


>UNIPROTKB|Q81ZD5 [details] [associations]
            symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
            "Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
            RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
            IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
            EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
            GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
            KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
            OMA:NTESYCH ProtClustDB:CLSK865525
            BioCyc:BANT260799:GJAJ-361-MONOMER
            BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
        Length = 329

 Score = 160 (61.4 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 61/235 (25%), Positives = 110/235 (46%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNK--KHCLDFNAEEHPIAFQ 69
             +APM ++TD   R    +  R    +TE   + +     G K  +  L F  +E P+   
Sbjct:    16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIFTEDEQPMVAH 75

Query:    70 V-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             + GDN P+   + +  + + G+  I++N GCP   V +   G+ L+ +P + ++ I+A +
Sbjct:    76 IWGDN-PEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGKGSGLILRPDVAAELIQAAK 134

Query:   129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
                 + ++VK R+G  +++ ++   D++  +         +H R              IP
Sbjct:   135 AG-GLPVSVKTRLGFKELSEWE---DWLTHIFKQDIANLSIHLRTREEMSQVDAHWELIP 190

Query:   189 ILKYNFVYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPF 240
              +K      L+    P   + ING I  +K  ++L   Y IDGVM+GR  +KNPF
Sbjct:   191 EIK-----KLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFKNPF 240


>TIGR_CMR|BA_0334 [details] [associations]
            symbol:BA_0334 "conserved hypothetical protein"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
            RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
            IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
            EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
            GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
            KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
            OMA:NTESYCH ProtClustDB:CLSK865525
            BioCyc:BANT260799:GJAJ-361-MONOMER
            BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
        Length = 329

 Score = 160 (61.4 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 61/235 (25%), Positives = 110/235 (46%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNK--KHCLDFNAEEHPIAFQ 69
             +APM ++TD   R    +  R    +TE   + +     G K  +  L F  +E P+   
Sbjct:    16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIFTEDEQPMVAH 75

Query:    70 V-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             + GDN P+   + +  + + G+  I++N GCP   V +   G+ L+ +P + ++ I+A +
Sbjct:    76 IWGDN-PEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGKGSGLILRPDVAAELIQAAK 134

Query:   129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
                 + ++VK R+G  +++ ++   D++  +         +H R              IP
Sbjct:   135 AG-GLPVSVKTRLGFKELSEWE---DWLTHIFKQDIANLSIHLRTREEMSQVDAHWELIP 190

Query:   189 ILKYNFVYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPF 240
              +K      L+    P   + ING I  +K  ++L   Y IDGVM+GR  +KNPF
Sbjct:   191 EIK-----KLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFKNPF 240


>UNIPROTKB|A6QPA8 [details] [associations]
            symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
            [GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
            [GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
            OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
            EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
            UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
            GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
            NextBio:20869728 Uniprot:A6QPA8
        Length = 238

 Score = 153 (58.9 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 61/224 (27%), Positives = 100/224 (44%)

Query:    16 APMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGNKK-HCLDF--NAEEHPIAFQ 69
             APM+    R+ ++  R + R Y     YT M      + + K    +F  N  + P+  Q
Sbjct:    32 APMV----RYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQ 87

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+ + L+ +A+I+  +  + I++NCGCP        +GA L+ KP LV D +K +R+
Sbjct:    88 FAANDARLLSDAARIVCPYA-NGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRN 146

Query:   130 SVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 186
              VE     +++K RI  D   + D  R    T    G     VH R          + R 
Sbjct:   147 QVENPRFSVSIKIRIHDDLTRTVDLCRKAEAT----GVSWITVHGRTV--------EERH 194

Query:   187 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDG 228
              P+  Y  +  +K+    + I+ NG I++ KE +   H    DG
Sbjct:   195 QPV-HYEAIKIIKESM-SIPIVANGDIRSLKEAENVWHTTGTDG 236


>UNIPROTKB|P33371 [details] [associations]
            symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
            "Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
            binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
            evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
            activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
            process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
            eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
            RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
            SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
            EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
            GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
            PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
            HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
            BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
            BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
        Length = 315

 Score = 157 (60.3 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 66/246 (26%), Positives = 108/246 (43%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNKK-H--CLDF-NAEEHP- 65
             ++ +APM  + D   R    ++  Y    TE       +L  K  H  C +  NA   P 
Sbjct:     2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61

Query:    66 ---IAFQVGDNEPKKLAKSA-KIIQ--KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 119
                +  Q+    P+ LA++A + ++   WG D   LNCGCPS  V     GA L+  P L
Sbjct:    62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVD---LNCGCPSKTVNGSGGGATLLKDPEL 118

Query:   120 VSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
             +    KAMR++V   + ++VK R+G D      F  +    V  AG    +VH R     
Sbjct:   119 IYQGAKAMREAVPAHLPVSVKVRLGWDS-GEKKF--EIADAVQQAGATELVVHGRTK--- 172

Query:   178 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREA 235
                 +Q  +   + +  + ++++    + +I NG I   +     + ++  D VM+GR A
Sbjct:   173 ----EQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGA 227

Query:   236 YKNPFL 241
                P L
Sbjct:   228 LNIPNL 233


>TIGR_CMR|SPO_1762 [details] [associations]
            symbol:SPO_1762 "6,7-dimethyl-8-ribityllumazine synthase"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016740 GO:GO:0009231
            KO:K00794 GO:GO:0009349 GO:GO:0000906 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114
            ProtClustDB:PRK00061 HOGENOM:HOG000229250 OMA:GLCIGNG
            RefSeq:YP_167000.1 ProteinModelPortal:Q5LSK5 GeneID:3192913
            KEGG:sil:SPO1762 PATRIC:23376847 Uniprot:Q5LSK5
        Length = 183

 Score = 137 (53.3 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:   428 ISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 487
             + VPGALE+P A+    +   F+  +A+G +IRGET H++ + N++ S  +Q+     + 
Sbjct:    54 VEVPGALEVPTAIAMADRQSNFDGYVALGCVIRGETTHYDTVCNDS-SRAIQLMGLQGLC 112

Query:   488 IINAILTTETIEQANSR 504
             I N ILT ET  QA  R
Sbjct:   113 IGNGILTVETRPQAEVR 129


>TIGR_CMR|CJE_0118 [details] [associations]
            symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
            species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
            modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
            RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
            GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
            ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
            Uniprot:Q5HX43
        Length = 308

 Score = 155 (59.6 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 53/240 (22%), Positives = 113/240 (47%)

Query:     8 YNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKK-HCLDFNAEEH 64
             ++K+ + +APM   +D   R   ++      + +EM ++ A++   +K  H L+    E+
Sbjct:     4 FSKKPLFLAPMAGFSDLPFRNVVKKFGADITI-SEMISSNALVYESSKTLHMLERAELEN 62

Query:    65 PIAFQVGDNEPKKLAKSAKIIQKWGY-DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDC 123
             P   Q+   + + L K+ +++ +  + D I+ NCGCP N+V     G+ L+    L  + 
Sbjct:    63 PYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKNL 122

Query:   124 IKAMRDSVEIDIT-VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 182
             +  ++++ +  +T VK R+G ++     +         S G     +H R    K+L   
Sbjct:   123 VGVIKENNKKSLTSVKFRLGFNE----KYPEKMAKICESLGVDFISIHGRTR--KQLYSG 176

Query:   183 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH-LNYIDGVMLGREAYKNPFL 241
             +        Y  + + K    ++ +I NG I  +   +++ +   DG+M+GR +  NP++
Sbjct:   177 K------ADYGSIASAKASV-KIPVIANGDINAQNAKEVYKITKCDGLMIGRASVGNPWI 229


>TIGR_CMR|CJE_0431 [details] [associations]
            symbol:CJE_0431 "transcription antitermination factor
            NusB" species:195099 "Campylobacter jejuni RM1221" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR
            GO:GO:0006353 eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625
            ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
            SUPFAM:SSF48013 TIGRFAMs:TIGR01951 RefSeq:YP_178450.1
            ProteinModelPortal:Q5HW85 STRING:Q5HW85 PRIDE:Q5HW85 GeneID:3231193
            KEGG:cjr:CJE0431 PATRIC:20042562 OMA:QMPGVDK
            BioCyc:CJEJ195099:GJC0-436-MONOMER Uniprot:Q5HW85
        Length = 132

 Score = 136 (52.9 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 37/126 (29%), Positives = 66/126 (52%)

Query:   532 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKV--DKKYFYLIL-RGVINDINFL 588
             RH+ R+  +  +Y +  N+ +      ++ EI +  K+  ++K F L L  G+++++N +
Sbjct:     4 RHQVRQSVISLLYAFELNSQN----NVFVDEILDEKKIRNEQKNFTLNLYNGILDNLNNI 59

Query:   589 RYDL-SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
                L S + D  I  L  +E  +L +G YEL      P  ++INEAIEL K   N +  K
Sbjct:    60 DETLNSFLNDNQITALGHVERAILRLGAYELL-FTDTPSAIVINEAIELAKELANDNSPK 118

Query:   648 YLEALL 653
             ++  +L
Sbjct:   119 FINGVL 124


>TIGR_CMR|SO_4730 [details] [associations]
            symbol:SO_4730 "oxygen-independent coproporphyrinogen III
            oxidase" species:211586 "Shewanella oneidensis MR-1" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
            GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
            GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
            RefSeq:NP_720246.1 HSSP:P32131 ProteinModelPortal:Q8E8D5
            GeneID:1172309 KEGG:son:SO_4730 PATRIC:23529123 Uniprot:Q8E8D5
        Length = 458

 Score = 158 (60.7 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 47/209 (22%), Positives = 86/209 (41%)

Query:   647 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSIT 706
             +Y+E L  ++    P+  +  +  +  GGGTP+ ++   +                   +
Sbjct:    85 QYIEYLSHEIIKRAPLFKHYSVTQMHWGGGTPTFLNPEQIIKLTALIKANFNFADEGEFS 144

Query:   707 LEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 765
             +E +P   E+    +    G NR+SIG+Q FN +    + R  D +     +  AK   F
Sbjct:   145 IEVDPREIELSMLDTLKEAGFNRISIGVQDFNKEVQVAVNREQDEQFIFDLMAKAKAMGF 204

Query:   766 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSN 823
              + N+DLIY LP+QT       +   +  SP  LS+++    P  +    K     +PS 
Sbjct:   205 VSTNIDLIYGLPHQTPETFAATMQRVLDLSPDRLSVFNYAHLPARFAAQRKIKDEHLPSP 264

Query:   824 DENAVMQDKITSLLKNNYYKNYEISAYSK 852
              +   M  +    L    Y+   +  ++K
Sbjct:   265 KQKLEMLHQTIETLTGAGYQYIGMDHFAK 293


>SGD|S000004397 [details] [associations]
            symbol:DUS4 "Dihydrouridine synthase" species:4932
            "Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
            [GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
            dihydrouridine synthesis" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
            EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
            PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
            GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
            PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
            IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
            GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
            BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
            GermOnline:YLR405W Uniprot:Q06063
        Length = 367

 Score = 153 (58.9 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 63/251 (25%), Positives = 114/251 (45%)

Query:     7 KYNKRKISIA-PMMNLTDRHCRMFHRQITR-YSW--LYTEMFTTQAILGNKKHC----LD 58
             K + R ++IA PM+    R+ ++  RQ+ R Y+   +Y+ M   +  + N+ H     L 
Sbjct:    34 KTHGRPVTIAGPMV----RYSKLPFRQLCREYNVDIVYSPMILAREYVRNE-HARISDLS 88

Query:    59 FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCP-SNRVQNGFFGAILMTKP 117
              N E+ P+  QVG N    L K  +++  +  D I +NCGCP   +++ G   A++    
Sbjct:    89 TNNEDTPLIVQVGVNNVADLLKFVEMVAPY-CDGIGINCGCPIKEQIREGIGCALIYNSD 147

Query:   118 LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
             LL S  + A++D     + ++ +I I +  + D   +    +  AG     +H R    +
Sbjct:   148 LLCS-MVHAVKDKYGDKLRIETKIRIHE--ALDETVELCRKLCDAGVDWITIHGRT---R 201

Query:   178 KLNPKQNRKIPILKYNFVYNLK-KDFPELEIIINGGIKTKKEIDLHLNYID--GVMLGRE 234
             +    Q   +  +KY  + N+  K+ P   +I NG      +++    Y    GVM  R 
Sbjct:   202 RTRSSQPANLDAIKY-IIENISDKNVP---VIANGDCFKLSDLERITKYTGAHGVMAVRG 257

Query:   235 AYKNPFLMSNF 245
                NP L + +
Sbjct:   258 LLSNPALFAGY 268


>UNIPROTKB|Q489F6 [details] [associations]
            symbol:CPS_0550 "tRNA-dihydrouridine synthase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR004652
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
            TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
            STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
            BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
        Length = 338

 Score = 151 (58.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 60/248 (24%), Positives = 115/248 (46%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN--KKHCLDFNAEEHPI-AF 68
             ++ +APM  +TD+  R    Q+       +EM ++   + N  K      + +   I + 
Sbjct:    11 QVMLAPMAGITDQPFRQLCCQLGA-GLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRSV 69

Query:    69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             Q+  + P +LA +AK+    G   I++N GCP+ +V     G+ L+ +P  V   ++++ 
Sbjct:    70 QIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVV 129

Query:   129 DSVEIDITVKHRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQN 184
             ++V+I +T+K R G   D  N  +  +       ++G  +  VH R  N F K      N
Sbjct:   130 NAVDIPVTLKIRTGWCEDTRNGIEIAK----IAENSGIASLAVHGRTRNDFYKG-----N 180

Query:   185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLM 242
              +   +K      L    P   ++ NG I + ++    L++   D +M+GR A   P++ 
Sbjct:   181 AEYDTIK---AIKLAISIP---VVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234

Query:   243 SNFDLNYY 250
                ++NY+
Sbjct:   235 R--EINYF 240


>TIGR_CMR|CPS_0550 [details] [associations]
            symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
            InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
            KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
            GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
            BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
        Length = 338

 Score = 151 (58.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 60/248 (24%), Positives = 115/248 (46%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN--KKHCLDFNAEEHPI-AF 68
             ++ +APM  +TD+  R    Q+       +EM ++   + N  K      + +   I + 
Sbjct:    11 QVMLAPMAGITDQPFRQLCCQLGA-GLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRSV 69

Query:    69 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 128
             Q+  + P +LA +AK+    G   I++N GCP+ +V     G+ L+ +P  V   ++++ 
Sbjct:    70 QIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVV 129

Query:   129 DSVEIDITVKHRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQN 184
             ++V+I +T+K R G   D  N  +  +       ++G  +  VH R  N F K      N
Sbjct:   130 NAVDIPVTLKIRTGWCEDTRNGIEIAK----IAENSGIASLAVHGRTRNDFYKG-----N 180

Query:   185 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLM 242
              +   +K      L    P   ++ NG I + ++    L++   D +M+GR A   P++ 
Sbjct:   181 AEYDTIK---AIKLAISIP---VVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234

Query:   243 SNFDLNYY 250
                ++NY+
Sbjct:   235 R--EINYF 240


>TIGR_CMR|SO_4520 [details] [associations]
            symbol:SO_4520 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:211586 "Shewanella oneidensis MR-1"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
            SMART:SM00729 GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0051989 KO:K00224
            HOGENOM:HOG000001637 OMA:CHTLCSF ProtClustDB:PRK08629
            RefSeq:NP_720040.1 ProteinModelPortal:Q8E8Y0 GeneID:1172110
            KEGG:son:SO_4520 PATRIC:23528707 Uniprot:Q8E8Y0
        Length = 445

 Score = 153 (58.9 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 54/220 (24%), Positives = 93/220 (42%)

Query:   657 ELSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEI 716
             E+ +   L     +++IGGGT +++ D   +                 ++ E++P   + 
Sbjct:    99 EMEMVKALGYDFESMYIGGGTTTVLED---ELARTIEHAKTLFPSIKEVSCESDPQHLDS 155

Query:   717 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHD---SKQAKYAIEIAKQYFNNFNLDLI 773
               F     + ++R+SIG+QSFN+  L +  R       +Q    I  AK+ F   N+DLI
Sbjct:   156 PGFKQLKGL-VDRMSIGVQSFNDDILKMTDRLEKFGTGQQTFDKIMAAKELFPIINVDLI 214

Query:   774 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKI 833
             +    QT   +  DL+ A +  P  ++ Y L I   T       L+ P  D     +  +
Sbjct:   215 FGFRGQTDEVIQHDLDMASRLDPRQITTYPLMITHQTRKSVKGKLAAPQADMANQYRQIL 274

Query:   834 TSLLKNNYYKNYEISAYSKTGYES--QHNLNYWKFGDYLG 871
              SL  N  Y      A+ K   E   ++ ++Y    +YLG
Sbjct:   275 NSL--NGQYNQLSAWAFGKANDEGFDEYVIDY---DEYLG 309


>UNIPROTKB|Q9KL39 [details] [associations]
            symbol:VCA0909 "Oxygen-independent coproporphyrinogen III
            oxidase, putative" species:243277 "Vibrio cholerae O1 biovar El Tor
            str. N16961" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR006638
            InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0003824
            GO:GO:0008152 GO:GO:0051536 GenomeReviews:AE003853_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495 EMBL:AE004418
            PIR:C82403 RefSeq:NP_233294.1 ProteinModelPortal:Q9KL39
            DNASU:2612225 GeneID:2612225 KEGG:vch:VCA0909 PATRIC:20086354
            OMA:LSVNHWA ProtClustDB:PRK09058 InterPro:IPR026332
            TIGRFAMs:TIGR04107 Uniprot:Q9KL39
        Length = 455

 Score = 152 (58.6 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 47/162 (29%), Positives = 66/162 (40%)

Query:   648 YLEALLIDVE--LSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSI 705
             Y  ALL +++   +LP       H ++IGGGTP+ +S   +                  I
Sbjct:    95 YFAALLEEIKQKAALPWTQTGVFHAVYIGGGTPTELSPEQIRQLGTAIRESFPLTPDCEI 154

Query:   706 TLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAI-EIAKQY 764
             TLE     F  E F +    G NR S G+QSFN +      R  D +     I  +A   
Sbjct:   155 TLEGRIHRFSDEMFENALEGGFNRFSFGVQSFNTQVRRRAKRLDDREVVMERIASLAATQ 214

Query:   765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 806
                  +DL+Y LP QT      DL   +Q     + LY L +
Sbjct:   215 QAPIVIDLLYGLPYQTAQVFEQDLQDFMQTGAQGIDLYQLVV 256


>TIGR_CMR|VC_A0909 [details] [associations]
            symbol:VC_A0909 "hutW protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
            GO:GO:0003824 GO:GO:0008152 GO:GO:0051536 GenomeReviews:AE003853_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495 EMBL:AE004418
            PIR:C82403 RefSeq:NP_233294.1 ProteinModelPortal:Q9KL39
            DNASU:2612225 GeneID:2612225 KEGG:vch:VCA0909 PATRIC:20086354
            OMA:LSVNHWA ProtClustDB:PRK09058 InterPro:IPR026332
            TIGRFAMs:TIGR04107 Uniprot:Q9KL39
        Length = 455

 Score = 152 (58.6 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 47/162 (29%), Positives = 66/162 (40%)

Query:   648 YLEALLIDVE--LSLPIILNRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSI 705
             Y  ALL +++   +LP       H ++IGGGTP+ +S   +                  I
Sbjct:    95 YFAALLEEIKQKAALPWTQTGVFHAVYIGGGTPTELSPEQIRQLGTAIRESFPLTPDCEI 154

Query:   706 TLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAI-EIAKQY 764
             TLE     F  E F +    G NR S G+QSFN +      R  D +     I  +A   
Sbjct:   155 TLEGRIHRFSDEMFENALEGGFNRFSFGVQSFNTQVRRRAKRLDDREVVMERIASLAATQ 214

Query:   765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 806
                  +DL+Y LP QT      DL   +Q     + LY L +
Sbjct:   215 QAPIVIDLLYGLPYQTAQVFEQDLQDFMQTGAQGIDLYQLVV 256


>TIGR_CMR|CJE_1072 [details] [associations]
            symbol:CJE_1072 "oxygen-independent coproporphyrinogen III
            oxidase" species:195099 "Campylobacter jejuni RM1221" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
            GO:GO:0051536 EMBL:CP000025 GenomeReviews:CP000025_GR
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
            HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
            InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
            RefSeq:YP_179065.1 ProteinModelPortal:Q5HUH0 STRING:Q5HUH0
            GeneID:3231581 KEGG:cjr:CJE1072 PATRIC:20043953
            BioCyc:CJEJ195099:GJC0-1098-MONOMER Uniprot:Q5HUH0
        Length = 451

 Score = 151 (58.2 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 48/217 (22%), Positives = 91/217 (41%)

Query:   645 EKKYLEALLIDVELSLPII-LNRKIHTIFIGGGTPSLISDTGL-DYXXXXXXXXXXXXXX 702
             +++YL  +  ++++   I+   R++  +  GGGTP+  S   L +               
Sbjct:    75 KERYLTYIFKELDILSTILDTKREVVQMHFGGGTPTFFSAKQLQNLILKIRSVFGNFSKD 134

Query:   703 XSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 762
               I+ E +P     E+    +  G NR+S G+Q F+ K    + R    +  + A+ + +
Sbjct:   135 VEISCEIDPRFLNEEQATVLTQNGFNRISFGVQDFDEKVQKEIHRIQPFELTQNALNLVR 194

Query:   763 QY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP--NTYFFKYPPLS 819
                  + N+DLIY LP Q L      L   +  +P  L++++    P       K+   +
Sbjct:   195 NKGIKSVNMDLIYGLPYQNLQSFTQTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENT 254

Query:   820 MPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGYE 856
             +PS D    + +     L  N YK   +  ++K   E
Sbjct:   255 LPSPDVKLEILEFCEKFLSKNGYKMIGMDHFAKENDE 291


>TIGR_CMR|DET_1278 [details] [associations]
            symbol:DET_1278 "N utilization substance protein B"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000027 GenomeReviews:CP000027_GR
            GO:GO:0006353 eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625
            Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
            TIGRFAMs:TIGR01951 HSSP:Q9X286 RefSeq:YP_181990.1
            ProteinModelPortal:Q3Z709 STRING:Q3Z709 GeneID:3229397
            KEGG:det:DET1278 PATRIC:21609585 OMA:MKTYRRQ ProtClustDB:CLSK836998
            BioCyc:DETH243164:GJNF-1279-MONOMER Uniprot:Q3Z709
        Length = 143

 Score = 128 (50.1 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 34/133 (25%), Positives = 66/133 (49%)

Query:   530 TPRHRAREFALQGIY-QWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFL 588
             T R +ARE  LQ +Y Q L  +   ++++  + E     + + ++ + +   ++   + L
Sbjct:     3 TSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEE-NAEFIFRLTNAIVKHKDLL 61

Query:   589 RYDLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
               ++        + +LS I+  VL +  +E+     +P KV INEA+EL KSFG     +
Sbjct:    62 DENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGNSSAR 121

Query:   648 YLEALLIDVELSL 660
             ++  +L  V  +L
Sbjct:   122 FINGVLSSVSKAL 134


>UNIPROTKB|Q884C6 [details] [associations]
            symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
            "Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
            GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
            RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
            KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
            ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
            Uniprot:Q884C6
        Length = 317

 Score = 147 (56.8 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 46/172 (26%), Positives = 78/172 (45%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEH------- 64
             +I++APM  L D   R    ++    W  TE       L    +   + +E H       
Sbjct:     2 QIALAPMEGLVDDILRDALTKVGGIDWCVTEFIRVSERLMPAHYFYKYASEFHNGAKTDA 61

Query:    65 --PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
               P+  Q+  ++P  LA++A    + G   ++LN GCP+  V     GAIL+ +P L+  
Sbjct:    62 GTPLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHT 121

Query:   123 CIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172
              +  +R +V  +I +T K R+G ++    D   D    ++  G    +VHAR
Sbjct:   122 IVSQVRRAVPKDIPVTAKMRLGYENT---DGALDCARALADGGAAQIVVHAR 170


>UNIPROTKB|P0ABT5 [details] [associations]
            symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
            "Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
            binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
            evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
            activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
            process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
            InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
            PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
            EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
            ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
            EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
            GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
            PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
            HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
            BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
            BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
            Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
        Length = 321

 Score = 147 (56.8 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 56/247 (22%), Positives = 112/247 (45%)

Query:    10 KRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTT--QAILGNKKHCLDFNAEEHPI- 66
             + ++  APM  +TDR  R    ++       +EM ++  Q    +K      + +E  I 
Sbjct:     9 RNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67

Query:    67 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 126
               Q+  ++PK++A +A+I  + G   I++N GCP+ +V     G+ L+  P +V   +  
Sbjct:    68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127

Query:   127 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNR 185
             + ++V++ +T+K R G      +    +        G +   +H R  A L   N +   
Sbjct:   128 VVNAVDVPVTLKIRTGWAP--EHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEA-- 181

Query:   186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMS 243
                  +Y+ +  +K+    + +I NG I    +    L+Y   D +M+GR A   P++  
Sbjct:   182 -----EYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235

Query:   244 NFDLNYY 250
               ++ +Y
Sbjct:   236 --EIQHY 240


>TIGR_CMR|GSU_1005 [details] [associations]
            symbol:GSU_1005 "dihydrouridine synthase family protein"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
            modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
            synthase activity" evidence=ISS] InterPro:IPR001269
            InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
            InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
            OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
            ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
            PATRIC:22024782 ProtClustDB:CLSK828131
            BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
        Length = 325

 Score = 147 (56.8 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 55/234 (23%), Positives = 100/234 (42%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAE---EHPIAFQVG 71
             +APM  +T+   R+  R+       +TEM +   ++   K   +       + P+  Q+ 
Sbjct:    18 LAPMAGITNLPFRLLARE-QGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQLF 76

Query:    72 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 131
              ++P  + + A  +  +G D I++N GCP  +V     G+ LM +P  V   ++A+R + 
Sbjct:    77 GDDPDVMGRVAATVDGYG-DLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAVRRAT 135

Query:   132 EIDITVKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
              + +TVK R G   +D N     R         GC    +H R+            K+  
Sbjct:   136 RLPLTVKIRSGWSCEDANFIQIAR----IAEEEGCNAVTLHPRSRAQMFEGTADWTKLAE 191

Query:   190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFL 241
             LK             + +I +G + +  ++   L+    DGVM+ R A  NP++
Sbjct:   192 LKQAVA---------IPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWI 236


>UNIPROTKB|J3QLE4 [details] [associations]
            symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
            [NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
        Length = 309

 Score = 145 (56.1 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 54/233 (23%), Positives = 101/233 (43%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    +   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEK 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + +T K R+   +I+    VR +   +  AGC+   VH R    K   P         
Sbjct:   140 LSVPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGRTKEQK--GPLSGAA---- 189

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  ++K    + +  NG I+  ++++  L    + GVM       NP L
Sbjct:   190 SWEHIKAVRKAVA-IPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPAL 241


>UNIPROTKB|G4MUR1 [details] [associations]
            symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
            ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
            KEGG:mgr:MGG_08825 Uniprot:G4MUR1
        Length = 614

 Score = 150 (57.9 bits), Expect = 8.5e-07, P = 8.5e-07
 Identities = 48/191 (25%), Positives = 85/191 (44%)

Query:    57 LDFN-AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT 115
             LD N A + P+  Q   N+P  L ++AK +  +  D ++LN GCP    + G +GA L  
Sbjct:   110 LDGNPAIDRPLFVQFCANDPSALLEAAKHVAPY-CDAVDLNLGCPQGIARKGHYGAFLQE 168

Query:   116 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 175
                L+   I+ + D + I +T K RI    +++ +    +   V  AG     VH R   
Sbjct:   169 DQELIHKLIRQLHDGLSIPVTAKIRI----LDTPEATLAYARNVLDAGASILTVHGRR-- 222

Query:   176 LKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEID--LHLNYIDGVMLG 232
                   ++     +  ++ + +L+++ P E  I  NG I  + +++  L     D VM  
Sbjct:   223 ----REQKGHLTGVADWSAIRHLRENLPPETVIFANGNILQRGDLERCLEATGADAVMSA 278

Query:   233 REAYKNPFLMS 243
                  +P L +
Sbjct:   279 EGNLSDPTLFA 289


>UNIPROTKB|Q6P1R4 [details] [associations]
            symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
            [NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
            EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
            UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
            SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
            DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
            GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
            GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
            HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
            eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
            InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
            GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
            CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
        Length = 473

 Score = 145 (56.1 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 54/233 (23%), Positives = 101/233 (43%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    +   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEK 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + +T K R+   +I+    VR +   +  AGC+   VH R    K   P         
Sbjct:   140 LSVPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGRTKEQK--GPLSGAA---- 189

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  ++K    + +  NG I+  ++++  L    + GVM       NP L
Sbjct:   190 SWEHIKAVRKAVA-IPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPAL 241


>MGI|MGI:1915980 [details] [associations]
            symbol:Dus1l "dihydrouridine synthase 1-like (S.
            cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
            "tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
            "flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
            eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
            EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
            UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
            STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
            KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
            InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
            Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
        Length = 475

 Score = 145 (56.1 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 54/233 (23%), Positives = 101/233 (43%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    D   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAHER 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + +T K R+   +I+    VR +   +  AGC+   VH R    K   P         
Sbjct:   140 LSVPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGRTKEQK--GPMAGTA---- 189

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  ++K    + +  NG I+  ++++  +    + GVM       NP L
Sbjct:   190 SWEHIKAVRKAVG-IPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPAL 241


>RGD|708389 [details] [associations]
            symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
            [GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
            [GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
            GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
            EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
            ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
            KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
            Uniprot:Q8K582
        Length = 438

 Score = 144 (55.7 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 54/233 (23%), Positives = 101/233 (43%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    D   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMILLAHER 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + +T K R+   +I+    VR +   +  AGC+   VH R    K   P         
Sbjct:   140 LSVPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGRTKEQK--GPMAGTA---- 189

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  ++K    + +  NG I+  ++++  +    + GVM       NP L
Sbjct:   190 SWEHIKAVRKAVG-IPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPAL 241


>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
            symbol:dus1l "dihydrouridine synthase 1-like (S.
            cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
            ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
            ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
            ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
        Length = 511

 Score = 143 (55.4 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 51/233 (21%), Positives = 100/233 (42%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    ++     L+ ++F   A    +    + N E+ P+  Q 
Sbjct:    53 VAPMVDQSELAWRLLSRRHGAELCYTPMLHAQVFVRDANYRRENLYSEVNQEDRPLITQF 112

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +G  L  +  L+   IK   + 
Sbjct:   113 CANDPEVFIQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEKMIKLANEK 171

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + IT K R+   +I     V+ +   +  AGC+   VH R         ++     I 
Sbjct:   172 LSVPITCKIRV-FPEIEKT--VK-YAKMLEKAGCQLLTVHGRT------KDQKGALTGIA 221

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  +++    + +  NG I+   ++   +    + GVM       NP L
Sbjct:   222 SWKHIKAVREAV-NIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPAL 273


>UNIPROTKB|E2R9L8 [details] [associations]
            symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
            EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
            Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
            NextBio:20851671 Uniprot:E2R9L8
        Length = 475

 Score = 142 (55.0 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 52/233 (22%), Positives = 99/233 (42%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    +   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAHEK 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + +T K R+   +I   D    +   +  AGC+   VH R    K   P         
Sbjct:   140 LSVPVTCKIRV-FPEI---DKTVKYAQMLEKAGCQLLTVHGRTKEQK--GPLSGTA---- 189

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  ++K    + +  NG I+  ++++  +    + GVM       NP L
Sbjct:   190 SWEHIKAVRKAVA-IPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPAL 241


>TIGR_CMR|BA_4406 [details] [associations]
            symbol:BA_4406 "N utilization substance protein B"
            species:198094 "Bacillus anthracis str. Ames" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 GO:GO:0006353
            RefSeq:NP_846634.1 RefSeq:YP_021049.1 RefSeq:YP_030336.1
            ProteinModelPortal:Q81M49 DNASU:1087738
            EnsemblBacteria:EBBACT00000010462 EnsemblBacteria:EBBACT00000015293
            EnsemblBacteria:EBBACT00000022074 GeneID:1087738 GeneID:2816677
            GeneID:2851749 KEGG:ban:BA_4406 KEGG:bar:GBAA_4406 KEGG:bat:BAS4086
            eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625 OMA:TEYVEIA
            ProtClustDB:PRK00202 BioCyc:BANT260799:GJAJ-4143-MONOMER
            BioCyc:BANT261594:GJ7F-4286-MONOMER Gene3D:1.10.940.10
            PANTHER:PTHR11078 SUPFAM:SSF48013 TIGRFAMs:TIGR01951 Uniprot:Q81M49
        Length = 130

 Score = 119 (46.9 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 34/133 (25%), Positives = 73/133 (54%)

Query:   532 RHRAREFALQGIYQW-LFNNMDVNL-IETYIKE--ISNFYKVDKKYFYLILRGVINDINF 587
             R  ARE A+Q +YQ  +   ++  + +E  + E   +N +       ++  + VI++   
Sbjct:     3 RRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNEFLESLVVGFVENKEVIDEA-- 60

Query:   588 LRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
             +R +L       +  +S ++  +L +  YE+K   +IP+ V INEAIE+ K+FG+ + ++
Sbjct:    61 IRQNLK---KWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRR 117

Query:   648 YLEALLIDVELSL 660
             ++  +L +++ +L
Sbjct:   118 FINGVLSNIKDTL 130


>UNIPROTKB|J3QQZ0 [details] [associations]
            symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
            [NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
        Length = 301

 Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 41/162 (25%), Positives = 76/162 (46%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    +   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEK 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 172
             + + +T K R+   +I+    VR +   +  AGC+   VH R
Sbjct:   140 LSVPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGR 177


>TIGR_CMR|BA_0875 [details] [associations]
            symbol:BA_0875 "oxygen-independent coproporphyrinogen III
            oxidase, putative" species:198094 "Bacillus anthracis str. Ames"
            [GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
            [GO:0006779 "porphyrin-containing compound biosynthetic process"
            evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
            SMART:SM00729 GO:GO:0003824 EMBL:AE016879 EMBL:AE017334
            GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0008152
            GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495
            RefSeq:NP_843387.1 RefSeq:YP_017511.1 ProteinModelPortal:Q81UJ4
            DNASU:1088750 EnsemblBacteria:EBBACT00000012337
            EnsemblBacteria:EBBACT00000015974 GeneID:1088750 GeneID:2815394
            KEGG:ban:BA_0875 KEGG:bar:GBAA_0875 PATRIC:18779392
            HOGENOM:HOG000057172 OMA:TGIRPTK ProtClustDB:PRK08207
            BioCyc:BANT261594:GJ7F-941-MONOMER InterPro:IPR023995
            TIGRFAMs:TIGR03994 Uniprot:Q81UJ4
        Length = 496

 Score = 142 (55.0 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 46/183 (25%), Positives = 82/183 (44%)

Query:   668 IHTIFIGGGTPSLISDTGLDYXXXXXXXXX-XXXXXXSITLEAN-PSTFEIEKFHSYSII 725
             + TI+ GGGTP+ I+   +D                  +T+EA  P T    K    +  
Sbjct:   227 VTTIYYGGGTPTSITAEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKW 286

Query:   726 GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSEL 784
              I+R+SI  QS++ + L  +GR H  ++      +A++   NN N+DLI  LP + L   
Sbjct:   287 NIDRISINPQSYHQETLKAIGRHHTVEETIEKYHLAREMGMNNINMDLIIGLPGEGLDIF 346

Query:   785 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP-PLSMPSNDE-NAVMQDKITSLLKNNYY 842
                L+   +  P  L++++L+ +  +   +      +   +E  A+M +      K+NY 
Sbjct:   347 KHTLDETEKLMPESLTVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQKHNYV 406

Query:   843 KNY 845
               Y
Sbjct:   407 PYY 409


>UNIPROTKB|E1BH75 [details] [associations]
            symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
            IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
            Uniprot:E1BH75
        Length = 270

 Score = 136 (52.9 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 59/233 (25%), Positives = 103/233 (44%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN---KKHCL--DFNAEEHPIAFQ 69
             +APM++ ++   R+  R+   +   YT M   Q  + +   +K  L  D   E+ P+  Q
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAHL-CYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQ 79

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK-PLLVSDCIKAMR 128
                N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  LL    I A  
Sbjct:    80 FCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMSILAWT 138

Query:   129 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 188
              S    +T K R+   +I+    VR +   +  AGC+   VH R    K   P       
Sbjct:   139 TS-SXPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGRTKEQK--GPLSGTA-- 189

Query:   189 ILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNP 239
                +  +  ++K    + +  NG I+  ++++  +    + GVM   EA  +P
Sbjct:   190 --SWEHIKAVRKAVT-IPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAVPSP 239


>UNIPROTKB|J9NYR0 [details] [associations]
            symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
            EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
        Length = 584

 Score = 142 (55.0 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 52/233 (22%), Positives = 99/233 (42%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   R+  R    Q+     L+ ++F   A    +    +   E+ P+  Q 
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    + 
Sbjct:    81 CANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAHEK 139

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
             + + +T K R+   +I   D    +   +  AGC+   VH R    K   P         
Sbjct:   140 LSVPVTCKIRV-FPEI---DKTVKYAQMLEKAGCQLLTVHGRTKEQK--GPLSGTA---- 189

Query:   191 KYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
              +  +  ++K    + +  NG I+  ++++  +    + GVM       NP L
Sbjct:   190 SWEHIKAVRKAVA-IPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPAL 241


>UNIPROTKB|Q487W0 [details] [associations]
            symbol:CPS_0906 "tRNA-dihydrouridine synthase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
            GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
            GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
            OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
            STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
            PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
        Length = 310

 Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 62/248 (25%), Positives = 112/248 (45%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNK---KHCLDF-NAEEH-- 64
             ++ +APM  + D   R    Q+  Y    TE       +L ++   ++C +  +A+ +  
Sbjct:     2 RVVLAPMEGVLDYRMRDLLTQVGSYDLCVTEFIRVVDQVLPDRVFHRYCPELIDADVYGS 61

Query:    65 ------PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL 118
                   P+  Q+    P+ +A++A  + + G   I+LN GCPS  V     G+IL+  P 
Sbjct:    62 CTKAGTPVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSRGGSILLKDPE 121

Query:   119 LVSDCIKAMRDSVEID--ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 176
              +   IKA++++V  D  ++ K R+G +D        +    V +AG     +HAR    
Sbjct:   122 NLYQIIKAVKEAVPSDTIVSAKIRLGYEDKT---LAIENGQAVEAAGANELTIHART--- 175

Query:   177 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG---VMLGR 233
              KL   +  K P   ++++  +K     + +I NG I   ++  +    I G   +M+GR
Sbjct:   176 -KL---EGYKPPA-HWHWIAKVKNAI-NIPVIANGEIWNLEDA-IKCREISGCTDLMVGR 228

Query:   234 EAYKNPFL 241
              A   P L
Sbjct:   229 GALTIPNL 236


>TIGR_CMR|CPS_0906 [details] [associations]
            symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
            ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
            GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
            BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
        Length = 310

 Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 62/248 (25%), Positives = 112/248 (45%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNK---KHCLDF-NAEEH-- 64
             ++ +APM  + D   R    Q+  Y    TE       +L ++   ++C +  +A+ +  
Sbjct:     2 RVVLAPMEGVLDYRMRDLLTQVGSYDLCVTEFIRVVDQVLPDRVFHRYCPELIDADVYGS 61

Query:    65 ------PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL 118
                   P+  Q+    P+ +A++A  + + G   I+LN GCPS  V     G+IL+  P 
Sbjct:    62 CTKAGTPVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSRGGSILLKDPE 121

Query:   119 LVSDCIKAMRDSVEID--ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 176
              +   IKA++++V  D  ++ K R+G +D        +    V +AG     +HAR    
Sbjct:   122 NLYQIIKAVKEAVPSDTIVSAKIRLGYEDKT---LAIENGQAVEAAGANELTIHART--- 175

Query:   177 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG---VMLGR 233
              KL   +  K P   ++++  +K     + +I NG I   ++  +    I G   +M+GR
Sbjct:   176 -KL---EGYKPPA-HWHWIAKVKNAI-NIPVIANGEIWNLEDA-IKCREISGCTDLMVGR 228

Query:   234 EAYKNPFL 241
              A   P L
Sbjct:   229 GALTIPNL 236


>TIGR_CMR|SPO_3532 [details] [associations]
            symbol:SPO_3532 "oxygen-independent coproporphyrinogen III
            oxidase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004109
            "coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
            "porphyrin-containing compound biosynthetic process" evidence=ISS]
            InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
            Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0006779 GO:GO:0051536
            Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
            HOGENOM:HOG000257214 KO:K02495 ProtClustDB:PRK09249
            TIGRFAMs:TIGR00538 RefSeq:YP_168727.1 ProteinModelPortal:Q5LMN1
            GeneID:3193999 KEGG:sil:SPO3532 PATRIC:23380535 OMA:ISRFPQG
            Uniprot:Q5LMN1
        Length = 451

 Score = 140 (54.3 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 37/164 (22%), Positives = 77/164 (46%)

Query:   648 YLEALLIDVELSLPIILNRKIHT--IFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSI 705
             Y++ L  ++ L L   L   +H   +  GGGTP+L++   +                   
Sbjct:    83 YVDTLKAELAL-LAERLPEGVHLSRLHWGGGTPTLLNPELMRGLARSIFDTVPLGPEAEF 141

Query:   706 TLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK-QY 764
             ++E +P+  +  +  + +  G+NR SIG+Q F+++    +GR       + A+E+ + + 
Sbjct:   142 SVEIDPNEIDPARLDALAEAGMNRASIGVQDFDDEIQKTIGRIQGYDVTRDAVEMIRARG 201

Query:   765 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP 808
               + N D++Y LP+QT + +   +   +  +P  ++LY     P
Sbjct:   202 IYSLNADILYGLPHQTRARMTESVQKLLSLNPDRVALYGYAHVP 245


>ASPGD|ASPL0000028987 [details] [associations]
            symbol:riboG species:162425 "Emericella nidulans"
            [GO:0009231 "riboflavin biosynthetic process" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IDA] [GO:0009349 "riboflavin
            synthase complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005758 "mitochondrial intermembrane space" evidence=IEA]
            [GO:0000906 "6,7-dimethyl-8-ribityllumazine synthase activity"
            evidence=IEA] HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885
            UniPathway:UPA00275 EMBL:BN001305 GO:GO:0009231
            HOGENOM:HOG000229253 GO:GO:0009349 Gene3D:3.40.50.960
            PANTHER:PTHR21058 SUPFAM:SSF52121 TIGRFAMs:TIGR00114 GO:GO:0004746
            EnsemblFungi:CADANIAT00003256 OMA:ETMHFEY Uniprot:C8VFD4
        Length = 207

 Score = 127 (49.8 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:   447 KKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQANSR 504
             K ++ +IAIGV+I+GET HFE IA+     +M++ +   +P+I  +LT  T EQ   R
Sbjct:   115 KPYDAIIAIGVLIKGETMHFEYIADAVTHGLMRVQLDTGVPVIFGVLTLLTEEQGLER 172

 Score = 42 (19.8 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query:   420 AQEKNILHISVPGALEIPLALKNI 443
             A++   +H +VPG+ E+P A++ +
Sbjct:    49 AEDHIEIH-TVPGSYELPFAVQRL 71

 Score = 39 (18.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query:   345 SASDRAHTIKVASSKKAKPSDIV 367
             S +D + T   ASS  +KP D +
Sbjct:    98 STADVSKTPSTASSAASKPYDAI 120


>UNIPROTKB|Q9KT00 [details] [associations]
            symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
            eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
            ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
            KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
            Uniprot:Q9KT00
        Length = 323

 Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 66/279 (23%), Positives = 120/279 (43%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNK---KHCLDFNAEEH--- 64
             ++ + PM  + D   R    QI  Y +  TE       +L +    + C +         
Sbjct:     2 RVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTPS 61

Query:    65 --PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
               P+  Q+   +P  +A++A    + G   I+LN GCP+  V     GA L+  P L+  
Sbjct:    62 GVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQ 121

Query:   123 CIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
              +KA RD+V   I ++ K R+G +D     F  + V  V+ A      VHAR     K  
Sbjct:   122 VVKACRDAVPAHIPVSAKIRLGWEDPEDC-F--EIVDAVAQAKADELTVHART----KAG 174

Query:   181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLNYIDGVMLGREAYKN 238
                  K   +K++++  +++    + +I NG +      +  +    +D +M+ R A   
Sbjct:   175 ---GYKASEIKWHYIDQIRQKC-SIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNV 230

Query:   239 PFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGD 277
             P L  N   + ++ +P +++   +D++ L     E  GD
Sbjct:   231 PNL-GNVVKHNHAAMPWHEV---VDLL-LRYTQFEVRGD 264


>TIGR_CMR|VC_1105 [details] [associations]
            symbol:VC_1105 "conserved hypothetical protein" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
            PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
            EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
            GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
            PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
            DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
            ProtClustDB:CLSK874217 Uniprot:Q9KT00
        Length = 323

 Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 66/279 (23%), Positives = 120/279 (43%)

Query:    12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMF-TTQAILGNK---KHCLDFNAEEH--- 64
             ++ + PM  + D   R    QI  Y +  TE       +L +    + C +         
Sbjct:     2 RVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTPS 61

Query:    65 --PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSD 122
               P+  Q+   +P  +A++A    + G   I+LN GCP+  V     GA L+  P L+  
Sbjct:    62 GVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQ 121

Query:   123 CIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
              +KA RD+V   I ++ K R+G +D     F  + V  V+ A      VHAR     K  
Sbjct:   122 VVKACRDAVPAHIPVSAKIRLGWEDPEDC-F--EIVDAVAQAKADELTVHART----KAG 174

Query:   181 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLNYIDGVMLGREAYKN 238
                  K   +K++++  +++    + +I NG +      +  +    +D +M+ R A   
Sbjct:   175 ---GYKASEIKWHYIDQIRQKC-SIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNV 230

Query:   239 PFLMSNFDLNYYSNLPQYKIPTRIDIINLDSENRENEGD 277
             P L  N   + ++ +P +++   +D++ L     E  GD
Sbjct:   231 PNL-GNVVKHNHAAMPWHEV---VDLL-LRYTQFEVRGD 264


>TIGR_CMR|APH_0539 [details] [associations]
            symbol:APH_0539 "6,7-dimethyl-8-ribityllumazine synthase"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000906
            "6,7-dimethyl-8-ribityllumazine synthase activity" evidence=ISS]
            [GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
            HAMAP:MF_00178 InterPro:IPR002180 Pfam:PF00885 UniPathway:UPA00275
            GO:GO:0016874 GO:GO:0016740 EMBL:CP000235 GenomeReviews:CP000235_GR
            GO:GO:0009231 eggNOG:COG0054 KO:K00794 GO:GO:0009349 GO:GO:0000906
            Gene3D:3.40.50.960 PANTHER:PTHR21058 SUPFAM:SSF52121
            TIGRFAMs:TIGR00114 ProtClustDB:PRK00061 HOGENOM:HOG000229250
            OMA:LTMIELK RefSeq:YP_505132.1 ProteinModelPortal:Q2GKG9
            STRING:Q2GKG9 GeneID:3931270 KEGG:aph:APH_0539 PATRIC:20949730
            BioCyc:APHA212042:GHPM-563-MONOMER Uniprot:Q2GKG9
        Length = 152

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query:   428 ISVPGALEIPLALKNIIQIKK--FNVLIAIGVIIRGETYHFELIANETISNIMQISIKNN 485
             I VPGALE+P A+   +   +  ++  +A+G +++G T H   ++N   S +  I++++ 
Sbjct:    46 IEVPGALEVPPAISFAVMSDRESYDGFVALGCVLKGYTDHNIHVSNSAFSALSDIAVQHA 105

Query:   486 IPIINAILTTETIEQANSRILTKG 509
             +P+   I+T +T+  A  R    G
Sbjct:   106 VPMGTGIITADTMSLAMERADVNG 129


>TIGR_CMR|GSU_1692 [details] [associations]
            symbol:GSU_1692 "N utilization substance protein B"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0006353
            "DNA-dependent transcription, termination" evidence=ISS]
            HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
            GO:GO:0006355 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
            GO:GO:0006353 eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625
            Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
            TIGRFAMs:TIGR01951 OMA:QMPGVDK HSSP:Q9X286 RefSeq:NP_952743.1
            ProteinModelPortal:Q74CI1 GeneID:2685421 KEGG:gsu:GSU1692
            PATRIC:22026233 ProtClustDB:CLSK828489
            BioCyc:GSUL243231:GH27-1722-MONOMER Uniprot:Q74CI1
        Length = 138

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 35/132 (26%), Positives = 61/132 (46%)

Query:   532 RHRAREFALQGIYQWLFNNMDVN-LIETYIKEISNFYKVDKKYFYLILRGVINDINFLRY 590
             R   RE ALQ +Y   +   +   L+E  + E        + +   ++RGV+     +  
Sbjct:     4 RRLGRELALQMLYSRDYAAGEAAPLLELVLDESEPGAAAGRSFADDLVRGVLEHRQEIDT 63

Query:   591 DLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYL 649
              ++      SI  ++ ++  +L +  YEL     IP  V INEAIE+ K FG  D   ++
Sbjct:    64 AITGASKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAKKFGTEDSPAFI 123

Query:   650 EALLIDVELSLP 661
               +L ++  +LP
Sbjct:   124 NGILDEIASTLP 135


>UNIPROTKB|E1C6D2 [details] [associations]
            symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
            ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
        Length = 478

 Score = 142 (55.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 56/234 (23%), Positives = 100/234 (42%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN---KKHCLDFNA--EEHPIAFQ 69
             +APM++ ++   R+  R+       YT M   Q  L +   ++  L   A  E+ P+  Q
Sbjct:    21 VAPMVDQSELAWRLLSRRHGA-QLCYTPMLHAQVFLRDANYRRENLYGEACPEDRPLIVQ 79

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    +
Sbjct:    80 FCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLANE 138

Query:   130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
              + + IT K R+   +I   D    +   +  AGC+   VH R    K   P       +
Sbjct:   139 KLSVPITCKIRV-FPEI---DKTVKYAQMLEKAGCQLLTVHGRTKEQK--GPLAG----V 188

Query:   190 LKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
               +  +  ++K    + +  NG I+   +++  +    + GVM       NP L
Sbjct:   189 ASWEHIQAVRKAV-SIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPAL 241

 Score = 37 (18.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query:   496 ETIEQANSRILTKGEIIIFINHKNKSLVNLIKNK 529
             E  E  NS +L+K +    + + NKS    +K K
Sbjct:   367 EEEEDGNSELLSKNKQKKKLRNPNKSFDPSLKPK 400


>UNIPROTKB|E1BWI8 [details] [associations]
            symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
            IPI:IPI00820914 ProteinModelPortal:E1BWI8
            Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
        Length = 486

 Score = 142 (55.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 56/234 (23%), Positives = 100/234 (42%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN---KKHCLDFNA--EEHPIAFQ 69
             +APM++ ++   R+  R+       YT M   Q  L +   ++  L   A  E+ P+  Q
Sbjct:    21 VAPMVDQSELAWRLLSRRHGA-QLCYTPMLHAQVFLRDANYRRENLYGEACPEDRPLIVQ 79

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +  L+   I    +
Sbjct:    80 FCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLANE 138

Query:   130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
              + + IT K R+   +I   D    +   +  AGC+   VH R    K   P       +
Sbjct:   139 KLSVPITCKIRV-FPEI---DKTVKYAQMLEKAGCQLLTVHGRTKEQK--GPLAG----V 188

Query:   190 LKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
               +  +  ++K    + +  NG I+   +++  +    + GVM       NP L
Sbjct:   189 ASWEHIQAVRKAV-SIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPAL 241

 Score = 37 (18.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query:   496 ETIEQANSRILTKGEIIIFINHKNKSLVNLIKNK 529
             E  E  NS +L+K +    + + NKS    +K K
Sbjct:   367 EEEEDGNSELLSKNKQKKKLRNPNKSFDPSLKPK 400


>TIGR_CMR|CJE_0412 [details] [associations]
            symbol:CJE_0412 "radical SAM domain protein"
            species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
            activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
            SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
            EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:3.80.30.20
            InterPro:IPR023404 eggNOG:COG0635 KO:K00224 RefSeq:YP_178431.1
            ProteinModelPortal:Q5HWA4 STRING:Q5HWA4 GeneID:3231174
            KEGG:cjr:CJE0412 PATRIC:20042524 HOGENOM:HOG000001637 OMA:CHTLCSF
            ProtClustDB:PRK08629 BioCyc:CJEJ195099:GJC0-417-MONOMER
            Uniprot:Q5HWA4
        Length = 456

 Score = 131 (51.2 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 59/227 (25%), Positives = 100/227 (44%)

Query:   670 TIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINR 729
             ++++GGGT +LI +  L                  I+ E++P+  +  K   +  I I+R
Sbjct:    94 SMYVGGGT-TLIDEEEL---LKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGI-IDR 148

Query:   730 LSIGIQSFNNKYLNILGRTH---DSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELML 786
             LS GIQSF+++ L  + R +    SK+ +  I  A      F++DLI+ LP Q   +L+ 
Sbjct:   149 LSCGIQSFDDETLKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLN 208

Query:   787 DLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYE 846
             DL  A   +P  ++ Y L     T       L +   D        I    K+ Y +N  
Sbjct:   209 DLEIAKNLAPQQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKD-YTQN-- 265

Query:   847 ISAYSKTGYESQHNLNYWK-FGDYLGNSIAKSKKIEKKCLIFEFMLN 892
              + +S +  +++ N  Y     +YLG        ++ + LI  F LN
Sbjct:   266 -NGWSFSLEKNKLNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLN 311


>WB|WBGene00009452 [details] [associations]
            symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
            [GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
            KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
            RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
            SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
            GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
            WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
            Uniprot:Q9XVN8
        Length = 527

 Score = 127 (49.8 bits), Expect = 0.00021, P = 0.00021
 Identities = 38/167 (22%), Positives = 76/167 (45%)

Query:    15 IAPMMNLTDRHCRMFHR----QITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQV 70
             +APM++ ++   RMF R    Q+T    ++  +F        +++ L     + P+  Q 
Sbjct:    77 LAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTY--RRNSLALVKADRPLVVQF 134

Query:    71 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 130
               N+      + ++++    D ++LN GCP    + G +G+ L  +  L+ + + A+RD 
Sbjct:   135 CANKVDTFLAACRLVEDV-CDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDY 193

Query:   131 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
               + I+ K R+  D   + ++ +  V     AG     VH R   +K
Sbjct:   194 CRLPISCKIRVRDDRQQTVEYAKRLV----DAGATMLTVHGRTRDMK 236


>UNIPROTKB|G3N340 [details] [associations]
            symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0050660 "flavin adenine dinucleotide binding"
            evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
            evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
            InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
            GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
            Ensembl:ENSBTAT00000063588 Uniprot:G3N340
        Length = 475

 Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 58/238 (24%), Positives = 103/238 (43%)

Query:    15 IAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN---KKHCL--DFNAEEHPIAFQ 69
             +APM++ ++   R+  R+   +   YT M   Q  + +   +K  L  D   E+ P+  Q
Sbjct:    21 VAPMVDQSELAWRLLSRRHGAHL-CYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQ 79

Query:    70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
                N+P+   ++A + Q +  D I+LN GCP    + G +GA L  +     D ++ MR 
Sbjct:    80 FCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQEE----WDLLQRMRT 134

Query:   130 ----SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 185
                  V   +T K R+   +I+    VR +   +  AGC+   VH R    K   P    
Sbjct:   135 WGHMVVGCPVTCKIRV-FPEIDKT--VR-YAQMLEKAGCQLLTVHGRTKEQK--GPLSGT 188

Query:   186 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
                   +  +  ++K    + +  NG I+  ++++  +    + GVM       NP L
Sbjct:   189 A----SWEHIKAVRKAVT-IPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPAL 241


>POMBASE|SPBC1709.06 [details] [associations]
            symbol:dus2 "tRNA dihydrouridine synthase Dus2
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
            adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
            GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
            eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
            RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
            EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
            OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
        Length = 479

 Score = 128 (50.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 46/183 (25%), Positives = 83/183 (45%)

Query:    62 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN-RVQNGFFGAILMTKPLLV 120
             E + + FQ+G   P+   ++AK++       I+LNCGCP +  V  G    +L  +  LV
Sbjct:    80 EANRLIFQLGSASPELAVEAAKLVAN-DVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLV 138

Query:   121 S--DC-IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 177
             S  D  +  +    +I I+ K R+    + + +     V  +   G R   VH R   ++
Sbjct:   139 SILDALVNEIGKPYKISISCKIRL----LETKEDTLKLVERICDTGVRAITVHCRTTPMR 194

Query:   178 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREA 235
                P     +  +      N  KD   + I++NG + +  + +D+   Y +DGV++ R A
Sbjct:   195 NTEPADRSYLSEI-VGVCRN--KD---VSILVNGDVLSYNDGLDVIEKYGVDGVLIARAA 248

Query:   236 YKN 238
              +N
Sbjct:   249 ERN 251

 Score = 44 (20.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 31/140 (22%), Positives = 62/140 (44%)

Query:   414 DGTM-ARAQEKNILHISVPGALE-IPLA---LKNIIQI-KKF-NVLIAIGVIIRGE-TYH 465
             DG + ARA E+N+    + G L    +A   LK  +++   F N    +  I++G    +
Sbjct:   240 DGVLIARAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQIMQGSFRKN 299

Query:   466 FELIAN-----ETISNIMQISIKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNK 520
                +A      E +    +I  K++    +A     T+E+  S +++  ++  F+     
Sbjct:   300 VRQLAQTAKTYEDLKKAFEIEYKHS----DASSVCPTLEKEKSLVISFVDLPSFLESLLA 355

Query:   521 SLVNLIKNKTPRHRAREFAL 540
             S  N++K  +  H  + FA+
Sbjct:   356 S--NILKQLSRLHFTKIFAV 373


>ASPGD|ASPL0000054271 [details] [associations]
            symbol:AN0956 species:162425 "Emericella nidulans"
            [GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
            dihydrouridine synthase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA]
            InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
            Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
            GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
            KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
            OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
            STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
            KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
        Length = 563

 Score = 126 (49.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 49/225 (21%), Positives = 90/225 (40%)

Query:    25 HCRMF--HRQITRYSWLYTEMFTTQAILGNKKHCLDFN-AEEHPIAFQVGDNEPKKLAKS 81
             H R+F  H      ++  T  +      G+    LD N A + P+  Q   N+P     +
Sbjct:    81 HARLFEEHAGYRAKAFHPTRAWGDTKCKGDDSPYLDGNPAIDRPLFVQFCANDPDDFFNA 140

Query:    82 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 141
             A+ +  +  D ++LN GCP    + G +GA L     L+   I  +   +E+ +T K RI
Sbjct:   141 ARHVAPY-CDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHMELEVPVTAKFRI 199

Query:   142 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 201
                   S +   ++   + SAG     +H R         ++     +  ++++  L+ +
Sbjct:   200 Q----ESKEKTLEYAKMILSAGASIITLHGRT------REQKGHNTGLADWSYIRYLRDN 249

Query:   202 FP-ELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMS 243
              P +  I  NG      ++   L     DGVM       +P + +
Sbjct:   250 LPPDTVIFANGNNLNHDDLARCLEATGADGVMSAEGNLSDPSIFA 294


>CGD|CAL0003882 [details] [associations]
            symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
            [GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
            InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
            CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
            EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
            PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
            ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
            GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
            Uniprot:Q59YG4
        Length = 433

 Score = 121 (47.7 bits), Expect = 0.00069, P = 0.00069
 Identities = 51/192 (26%), Positives = 85/192 (44%)

Query:    66 IAFQVGDNEPKKLAKSA-KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP-LLVSDC 123
             +  Q+G ++P+    +A K+I     D I+LNCGCP N   +   GA L+  P  L S  
Sbjct:    84 LILQLGSSDPQLAVDAARKVIDD--VDGIDLNCGCPKNFSTHSGMGAELLKTPDKLCSIL 141

Query:   124 IKAMRDSVEIDITVKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 181
             I  +    +I I  K  I   I   N+YD  ++ +  +   G     +H R   ++    
Sbjct:   142 INLVE---KIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLTIHCRTPIMR---- 194

Query:   182 KQNRKIPILKYNFVYNLKKDFPE--LEIIINGGIKTK---KEIDLHLNYIDG----VMLG 232
               NR+ P+  +NF+  L        + ++ING ++     K +   LN   G    +M+ 
Sbjct:   195 --NRQDPV--WNFLPKLIPIIQTAGVNLVINGNMQNVADLKNLQSALNDNGGGKLSIMIA 250

Query:   233 REAYKNPFLMSN 244
               A  NP + S+
Sbjct:   251 EAAEANPSVFSH 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      956       941   0.00093  122 3  11 22  0.38    34
                                                     38  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  174
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  414 KB (2199 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  82.72u 0.10s 82.82t   Elapsed:  00:01:27
  Total cpu time:  82.75u 0.10s 82.85t   Elapsed:  00:01:33
  Start:  Thu Aug 15 14:09:02 2013   End:  Thu Aug 15 14:10:35 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
