RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2378
(956 letters)
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 168 bits (428), Expect = 2e-48
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
I+ DS+ RE E D++++S F+TP I M K A GLIC L C +L + M
Sbjct: 16 ILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILE 75
Query: 324 S------------------SFGTNFTVSIEAANGVTTGISASDRAHTIK--VASSKKAKP 363
++F+++I TGI+ +DRA TIK K+ +
Sbjct: 76 FASQKFKVLRELYPNDIPYDEKSSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRF 134
Query: 364 SD----IVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR 419
+D PG + L+A +G V R GHTE L +LA L P ICE++ DDG
Sbjct: 135 NDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMS 194
Query: 420 -------AQEKNILHISV 430
A++ N++++S
Sbjct: 195 KNETKRYAEKHNLIYLSG 212
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 165 bits (419), Expect = 3e-47
Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD E+RENEGD+I ++ +T + ++ G++C+ +TE QL L MM + N
Sbjct: 25 VMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNT 84
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FPL+A+ GGVL
Sbjct: 85 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVL 144
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMAR-------AQEKNILHISV 430
RGGHTEA DL LAG P+ V+CE+ NDDGTMAR A + N+ +++
Sbjct: 145 TRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTI 198
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 158 bits (402), Expect = 5e-45
Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 8/175 (4%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
+I +D E+RENEGD+I++++ +T + F+ +Y+ G +C+ L+E+ QL+L M +
Sbjct: 19 LIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRS 78
Query: 324 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVL 383
GT +T++ + A G TTGISA DRA T + ++ +KP D ++PGHI PL+A G +
Sbjct: 79 DRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLK 138
Query: 384 IRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMAR-------AQEKNILHISV 430
R GHTEA L+ LAGL P+ VICE++ D DG M R ++ I I++
Sbjct: 139 KRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIINI 193
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 150 bits (380), Expect = 7e-42
Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 264 IINLDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 323
++ LD +RENE D+I++++ VT + FM +++ GLIC LT + L L M N
Sbjct: 17 VVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNA 76
Query: 324 SSFGTNFT-VSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGV 382
GT +T TTGISA DRA ++ ++ A+PS +PGH+FPL+A GGV
Sbjct: 77 DPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGV 136
Query: 383 LIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARAQEKN 424
R GHTEAG +L +LAG P AVI EI++D + +
Sbjct: 137 RARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRA 178
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
oxidase HemN {Escherichia coli [TaxId: 562]}
Length = 441
Score = 139 bits (351), Expect = 7e-36
Identities = 64/362 (17%), Positives = 134/362 (37%), Gaps = 50/362 (13%)
Query: 642 NIDEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 701
+YL+AL ++ P+ R + + GGGTP+ ++ + L+K +++ F
Sbjct: 76 QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNA 135
Query: 702 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 761
+ I++E +P E++ G NRLS+G+Q FN + ++ R D + + A
Sbjct: 136 DAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHA 195
Query: 762 KQYFNNF-NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY--PPL 818
++ N+DLIY LP QT L + +P LS+++ P + +
Sbjct: 196 REIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDA 255
Query: 819 SMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG------------YESQHNLNYWKF 866
+PS + + + + L + Y+ + +++ + +
Sbjct: 256 DLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGD 315
Query: 867 GDYLG-------------------------------NSIAKSKKIEKKCLIFEFMLNALR 895
D LG N++ + + + I ++ +L
Sbjct: 316 TDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLI 375
Query: 896 LKDGFSPNLFFERTGINIK----IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQ 951
+ ++ + L K GL+ + K I+ T+ GR + ++
Sbjct: 376 CNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICM 435
Query: 952 IF 953
F
Sbjct: 436 CF 437
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 114 bits (285), Expect = 2e-28
Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 21/255 (8%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQ 69
K+ +APM TD R + + ++EM + + L K L E +A Q
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGA-DFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQ 60
Query: 70 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
+ +EP +L+++A+I+ + Y I+LN GCP +V G L+ ++ +R
Sbjct: 61 IFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRK 119
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
SV +VK R+G + + R V G +H R + + + +
Sbjct: 120 SVSGKFSVKTRLGWEKNEVEEIYRILV----EEGVDEVFIHTRTVVQSFTGRAEWKALSV 175
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 247
L + ++G I T ++ L DG+++ R A P++
Sbjct: 176 L-----------EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKD 224
Query: 248 NYYSNLPQYKIPTRI 262
S I
Sbjct: 225 FLRSGKYSEPSREEI 239
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli
[TaxId: 562]}
Length = 139
Score = 83.6 bits (206), Expect = 1e-19
Identities = 47/126 (37%), Positives = 64/126 (50%)
Query: 528 NKTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINF 587
R RARE A+Q +Y W + D+ +E + VD YF +L GV + +
Sbjct: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61
Query: 588 LRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
L + + R + EL +E VL I YEL +PYKV INEAIEL KSFG D K
Sbjct: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121
Query: 648 YLEALL 653
++ +L
Sbjct: 122 FVNGVL 127
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 131
Score = 78.3 bits (192), Expect = 9e-18
Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 532 RHRAREFALQGIYQWLFNNMDVNLIE---TYIKEISNFYKVDKKYFYLILRGVINDINFL 588
RH+AR+ A+ +++ + + + E Y + RGV +
Sbjct: 2 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 61
Query: 589 RYDL-SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
+ + + +++ L +++ +L + +EL +P V+++EA++L K D
Sbjct: 62 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 121
Query: 648 YLEALL 653
++ +L
Sbjct: 122 FVNGVL 127
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus
(Magnaporthe grisea) [TaxId: 148305]}
Length = 195
Score = 79.4 bits (195), Expect = 2e-17
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 42/137 (30%)
Query: 420 AQEKNILHISVPGALEIPLALKNII----------------------------------- 444
+E NI+ SVPG+ E+P+A++ +
Sbjct: 42 VKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTTA 101
Query: 445 -QIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQANS 503
F+ LIAIGV+I+GET HFE IA+ +M++ + +P+I +LT T +QA +
Sbjct: 102 SSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKA 161
Query: 504 RILTKGEIIIFINHKNK 520
R N
Sbjct: 162 RAGVIE------GSHNH 172
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 150
Score = 77.7 bits (191), Expect = 3e-17
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 420 AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQ 479
+ +NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M+
Sbjct: 41 VKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMR 100
Query: 480 ISIKNNIPIINAILTTETIEQANSRILTKGE 510
+ + + +P+I +LT EQA R G
Sbjct: 101 VGLDSGVPVILGLLTVLNEEQALYRAGLNGG 131
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
maritima [TaxId: 2336]}
Length = 141
Score = 77.2 bits (189), Expect = 3e-17
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 529 KTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFL 588
KTPR R R + ++Q F + + K K+ +RG+ +++ +
Sbjct: 2 KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMI 61
Query: 589 RYDL-SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKK 647
+ + S+N LS ++ VL + TYEL IP +V I+EAIE+ K +G + K
Sbjct: 62 DDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGK 121
Query: 648 YLEALL 653
++ +L
Sbjct: 122 FVNGIL 127
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId:
235]}
Length = 148
Score = 75.0 bits (184), Expect = 2e-16
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 420 AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQ 479
+ VPGA EIPL K + + ++ ++ +I G Y + +A I+ +MQ
Sbjct: 33 GGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQ 92
Query: 480 ISIKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNK 520
+ ++ +P+++ +LT ++ + K K
Sbjct: 93 VQLETEVPVLSVVLTPHHFHESKEHHDFFHA-----HFKVK 128
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 74.3 bits (182), Expect = 6e-16
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 420 AQEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANETI 474
+E NI+ +VPG+ E+P K + K +V+I IGV+I+G T HFE I++ T
Sbjct: 47 VEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISDSTT 106
Query: 475 SNIMQISIKNNIPIINAILTTETIEQANSRILTK 508
+M + K ++P+I +LT T EQA +R
Sbjct: 107 HALMNLQEKVDMPVIFGLLTCMTEEQALARAGID 140
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId:
1423]}
Length = 154
Score = 72.7 bits (178), Expect = 1e-15
Identities = 36/91 (39%), Positives = 51/91 (56%)
Query: 420 AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQ 479
+I VPGA EIP A K + + KK++ +I +G +IRG T H++ + NE I Q
Sbjct: 43 VDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQ 102
Query: 480 ISIKNNIPIINAILTTETIEQANSRILTKGE 510
+ +P+I I+TTE IEQA R TK
Sbjct: 103 AANTTGVPVIFGIVTTENIEQAIERAGTKAG 133
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 72.7 bits (178), Expect = 1e-15
Identities = 19/82 (23%), Positives = 48/82 (58%)
Query: 427 HISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 486
+ VPGA E+ + + + + K++ ++ +G +++G+T H++ + N S ++ + + +
Sbjct: 50 VVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGV 109
Query: 487 PIINAILTTETIEQANSRILTK 508
P + +LT + ++QA +R K
Sbjct: 110 PCVFGVLTCDNMDQAINRAGGK 131
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 76.6 bits (187), Expect = 1e-15
Identities = 39/246 (15%), Positives = 81/246 (32%), Gaps = 11/246 (4%)
Query: 27 RMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ 86
R+ + + + + I+ K L+ N E PI V +E I
Sbjct: 62 RVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIG 121
Query: 87 KW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 145
I LN CP+ + F T P + + +KA + ++ + VK + D
Sbjct: 122 DAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTD 177
Query: 146 INSYDFVRD------FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK 199
I + + G R + + I + ++ +
Sbjct: 178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA 237
Query: 200 KDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIP 259
+D I + G + +++++ V +G + +PF+ + QY+I
Sbjct: 238 QDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRIE 297
Query: 260 TRIDII 265
+ +I
Sbjct: 298 SLESLI 303
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId:
63363]}
Length = 154
Score = 69.2 bits (169), Expect = 2e-14
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 420 AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQ 479
+E++I + VPG+ EIP+A + + + + +IAIGV+IRG T HF+ IA+E +
Sbjct: 43 GREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLAN 102
Query: 480 ISIKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNK---------SLVNLIKN 528
+S++ PI ++T +T+EQA R TK H NK + NL K+
Sbjct: 103 LSLELRKPITFGVITADTLEQAIERAGTK--------HGNKGWEAALSAIEMANLFKS 152
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 140
Score = 63.5 bits (154), Expect = 2e-12
Identities = 19/121 (15%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 534 RAREFALQGIYQWLFNNMDVN-LIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDL 592
R A Q + Q + ++ ++ +++S+ DK + GV+ ++ L + +
Sbjct: 2 NLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDK---DKALLQELCFGVLRTLSQLDWLI 58
Query: 593 SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDEKKYLEAL 652
+ ++ R + + ++++G Y+ + +IP + E +E + K + +
Sbjct: 59 NKLMARPMTGKQRTVHYLIMVGLYQ-LLYTRIPPHAALAETVEGAIAIKRPQLKGLINGV 117
Query: 653 L 653
L
Sbjct: 118 L 118
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 56.5 bits (135), Expect = 5e-09
Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 14/236 (5%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
++ T Q + + T + + IA +
Sbjct: 58 IVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKND 117
Query: 78 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 137
+ ++ + G D + LN CP + G P LV + + +R +V+I
Sbjct: 118 WMELSRKAEASGADALELNLSCPHGMGERGMGL-ACGQDPELVRNICRWVRQAVQIPFFA 176
Query: 138 KHRIGIDDINS-----YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK------ 186
K + DI S + D V ++ + + K+
Sbjct: 177 KLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT 236
Query: 187 -IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 240
I + V + + P I+ GGI + + L+ + + F
Sbjct: 237 AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDF 292
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 48.4 bits (114), Expect = 2e-06
Identities = 32/251 (12%), Positives = 76/251 (30%), Gaps = 30/251 (11%)
Query: 18 MMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKK 77
M ++ G + A + + P +
Sbjct: 72 AMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAP-SALQAPINRFVPHE 130
Query: 78 L------------AKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTK 116
L A+ A++ ++ GYD + + ++ +G +
Sbjct: 131 LSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNR 190
Query: 117 PLLVSDCIKAMRDSVEIDITVKHRIGID----DINSYDFVRDFVGTVSSAGCRTFIVHAR 172
+ ++A+R+ V D + +R+ + D ++ + + +AG I++
Sbjct: 191 MRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGA--TIINTG 248
Query: 173 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVM 230
+ + P +P +++V K L ++ I + D L D V
Sbjct: 249 IGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVS 308
Query: 231 LGREAYKNPFL 241
+ R + L
Sbjct: 309 MARPFLADAEL 319
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 43.0 bits (100), Expect = 1e-04
Identities = 35/255 (13%), Positives = 76/255 (29%), Gaps = 31/255 (12%)
Query: 12 KISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG 71
+I+ + +D H F + + +++ A G K IAF
Sbjct: 67 RITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQ 126
Query: 72 DNEPKKL------------AKSAKIIQKWGYD--EINLNCG-------CPSNRVQNGFFG 110
P ++ ++A ++ G+D EI+ G P + + +G
Sbjct: 127 SATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYG 186
Query: 111 AILMTKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDINSYDFVRDFVGTVSSAGCRTFI 168
+ + + I ++ + + V+ D F + G
Sbjct: 187 GSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLID 246
Query: 169 VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYI 226
+ P + +F +++ + G I + L
Sbjct: 247 CSSGALV-----HADINVFPGYQVSFAEKIREQAD-MATGAVGMITDGSMAEEILQNGRA 300
Query: 227 DGVMLGREAYKNPFL 241
D + +GRE ++PF
Sbjct: 301 DLIFIGRELLRDPFF 315
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 37.6 bits (86), Expect = 0.007
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 14/173 (8%)
Query: 79 AKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 129
++A+ ++ G+D + ++ + +G + + + + A+ +
Sbjct: 166 RQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAE 225
Query: 130 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 189
+ ++ D + + A+L P
Sbjct: 226 VFGPERVGIRLTPFLELFGLT---DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT 282
Query: 190 LKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNYIDGVMLGREAYKNPFL 241
F +++ F +I G + + L N D V GR NP L
Sbjct: 283 YPEGFREQMRQRFK-GGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDL 334
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 36.1 bits (82), Expect = 0.019
Identities = 26/248 (10%), Positives = 65/248 (26%), Gaps = 12/248 (4%)
Query: 1 MNMINSKYNKRKISIAPMMNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFN 60
+ S +E T +
Sbjct: 88 AMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQV 147
Query: 61 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLV 120
+ + A + + A + + + L P + +G L +
Sbjct: 148 QQFYVDAAKR-----SRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFW 202
Query: 121 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN 180
+ ++ ++ +V D + R G+D + + V +V + + +
Sbjct: 203 LETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIA 262
Query: 181 PKQNRKIPILKYNFVYNLK-----KDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGR 233
P Y + + K + ++ G +++ + Y D + R
Sbjct: 263 EWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCAR 322
Query: 234 EAYKNPFL 241
+ +PFL
Sbjct: 323 PSIADPFL 330
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 33.6 bits (77), Expect = 0.075
Identities = 9/53 (16%), Positives = 21/53 (39%)
Query: 470 ANETISNIMQISIKNNIPIINAILTTETIEQANSRILTKGEIIIFINHKNKSL 522
++S++ +I + P+I + E SR++ G + I +
Sbjct: 59 TPWSMSDVSRIYLNEAAPVIGDVAMETITETIQSRVIPAGNLYISGEKRRGEA 111
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase
{Enterobacter cloacae [TaxId: 550]}
Length = 363
Score = 33.0 bits (74), Expect = 0.19
Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 32/253 (12%)
Query: 25 HCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAK---- 80
+++H +S + + + +E+ A +V P+ L
Sbjct: 97 AVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIP 156
Query: 81 --------SAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDC 123
+ ++ G+D + L+ PS+ + +G + + LV +
Sbjct: 157 GIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEV 216
Query: 124 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 183
+ A+ + D I + D + + A + R ++
Sbjct: 217 VDAVCNEWSADRIGIRVSPIGTFQNVDNGPN---EEADALYLIEELAKRGIAYLHMSETD 273
Query: 184 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 241
F +++ F +II G T ++ + + ID V GR+ NP L
Sbjct: 274 LAGGKPYSEAFRQKVRERFHG--VIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDL 331
Query: 242 ----MSNFDLNYY 250
+LN
Sbjct: 332 VARLQKKAELNPQ 344
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 90
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 887 FEFMLNALR-LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYF 945
E + L K G ++ + +K L ++++ K T G
Sbjct: 5 LEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEEL 64
Query: 946 LNDLQQI 952
L D+++
Sbjct: 65 LEDIRKF 71
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 29.9 bits (66), Expect = 1.7
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 19/185 (10%)
Query: 81 SAKIIQKWGYD--EIN-----LNCGCPSNRV--QNGFFGAILMTKPLLVSDCIKAMRDSV 131
+A+ + G+D EI+ L ++V ++ +G L + + ++A+ + +
Sbjct: 163 AARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEI 222
Query: 132 EIDITVKHRI-GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 190
D + D +G + + + P+ +
Sbjct: 223 GSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVV----EPRMKTAWEKI 278
Query: 191 KYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNYIDGVMLGREAYKNPFL----MSNF 245
+ + + I+ GG + L + D V GR NP L N
Sbjct: 279 ECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFELNA 338
Query: 246 DLNYY 250
LN Y
Sbjct: 339 PLNKY 343
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 69
Score = 26.9 bits (60), Expect = 2.6
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 907 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDL 949
ER + + + L+ L +++ + T G+ + L
Sbjct: 25 ERLELGEGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKL 67
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 237
Score = 28.4 bits (63), Expect = 3.7
Identities = 9/97 (9%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 249 YYSNLPQYKIPTRIDIINLD-SENRENEGDIILSSD-FVTPNAINFMSKYARGLICMTLT 306
+++ + + ++ ++ +++ D+IL D + +++ + +
Sbjct: 110 SFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSS 169
Query: 307 EKHC-----IQLKLDMMTKKNNSSFGTNFTVSIEAAN 338
+ + +SF FT I++ +
Sbjct: 170 VGRALFYAPVHIWES---SAVVASFEATFTFLIKSPD 203
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 28.2 bits (62), Expect = 7.1
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 423 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 482
+L P A+E L IQ V A GV + + H E++ + + +
Sbjct: 1332 HQLLEAKGPEAVE--RYLVEEIQ----KVYRAQGVKLHDK--HIEIVVRQMMKYVEVTDP 1383
Query: 483 KNNIPIINAILTTETIEQANSRILTKG 509
++ + +L +E N R++ +G
Sbjct: 1384 GDSRLLEGQVLEKWDVEALNERLIAEG 1410
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.397
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,604,180
Number of extensions: 181533
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 47
Length of query: 956
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 862
Effective length of database: 1,116,976
Effective search space: 962833312
Effective search space used: 962833312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)