BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2379
(585 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0ABI8|CYOB_ECOLI Ubiquinol oxidase subunit 1 OS=Escherichia coli (strain K12)
GN=cyoB PE=1 SV=1
Length = 663
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/583 (65%), Positives = 467/583 (80%), Gaps = 1/583 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W MK+ + K D +++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKR 582
WH+W L I+ F +I I +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQH 650
>sp|P0ABI9|CYOB_ECOL6 Ubiquinol oxidase subunit 1 OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cyoB PE=3 SV=1
Length = 663
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/583 (65%), Positives = 467/583 (80%), Gaps = 1/583 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W MK+ + K D +++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKR 582
WH+W L I+ F +I I +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQH 650
>sp|P0ABJ0|CYOB_ECO57 Ubiquinol oxidase subunit 1 OS=Escherichia coli O157:H7 GN=cyoB
PE=3 SV=1
Length = 663
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/583 (65%), Positives = 467/583 (80%), Gaps = 1/583 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W MK+ + K D +++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKR 582
WH+W L I+ F +I I +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQH 650
>sp|Q9I426|CYOB_PSEAE Ubiquinol oxidase subunit 1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cyoB PE=3
SV=1
Length = 658
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/585 (61%), Positives = 453/585 (77%), Gaps = 1/585 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR Q A++ G++ GYLPPEHY+QIFTAHGVIMI F+AMP +TG++N V
Sbjct: 68 MLVRGFADAIMMRGQLALAEGANHGYLPPEHYDQIFTAHGVIMIIFMAMPFMTGLMNLAV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLN+LSFW+ A+LV +SL +GEFA TGW+ YPPLS +A SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNSLSFWLLVVSAMLVNVSLGLGEFARTGWVAYPPLSELAYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DYYIW+LQI+G+GTLL+GIN + T+ KMR PGMKLM MPIFTWT NILIVA+FP+LT
Sbjct: 188 DYYIWALQISGMGTLLTGINFLVTVFKMRTPGMKLMQMPIFTWTCTFANILIVASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L L +LDRY+ HFFTN+LGGN MMY+NL W WGHPEVYIL+LP FGIFSEV +TF+
Sbjct: 248 AALGLLSLDRYLDMHFFTNELGGNAMMYINLFWAWGHPEVYILILPAFGIFSEVTATFAG 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KR+FGY SMV+A+ IT L + VWLHHFFTMGSG +VN FFG+ TM+ISIPTG K+FNWL
Sbjct: 308 KRMFGYKSMVWASAAITFLGFTVWLHHFFTMGSGGDVNGFFGVATMLISIPTGVKLFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FT+Y+GR+RF PILWT+GFM+TF IGGM GV+LA+P A+FLLHNSLFL+AHFHN IIGG
Sbjct: 368 FTIYKGRLRFSTPILWTLGFMVTFTIGGMTGVLLAIPGADFLLHNSLFLIAHFHNTIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
+FG ++G +WFPKAFG+ L+ WGK SFW WL+GFY+AFMPLYILGFMG+TRR++H++
Sbjct: 428 AVFGYLAGFAFWFPKAFGFTLDEKWGKRSFWCWLVGFYMAFMPLYILGFMGMTRRLNHYD 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
+ + + +A FG +LI GI +IQL VS R R L D+ GDPW GRTLEW+TSSPP
Sbjct: 488 NPLWKPYLVVAFFGAVLIFCGIACQLIQLFVSVRNRKQLADVNGDPWEGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P + D++ MKK + K +Q I MPKNT G I++F+ + GFA +
Sbjct: 548 PFYNFAELPKVQDVDAFHDMKKAGTAYRKLPAYQPIHMPKNTAAGFSIAVFAFVFGFAAI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIR 584
WH+W L + F+ + I ++N +YY+ EEI IE R +
Sbjct: 608 WHIWWLMAVGFVGMIGSFIVRSYNQDVDYYVQPEEIEKIESARFQ 652
>sp|P57543|CYOB_BUCAI Ubiquinol oxidase subunit 1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cyoB PE=3 SV=1
Length = 662
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/584 (64%), Positives = 456/584 (78%), Gaps = 3/584 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
MLFRGF DA++MR QQ ++ G+LPP HY+QIFTAHGVIMIFFVAMPLV G++N ++
Sbjct: 68 MLFRGFVDAILMRTQQVVASAGFKGFLPPHHYDQIFTAHGVIMIFFVAMPLVIGLMNLVI 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW+ A+L+ +SL IGEFA TGWL YPPLSGI S GVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWLNVSSAVLLTLSLGIGEFAQTGWLAYPPLSGIKYSSGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQI+G+GT L+GIN + TI+KMRAPGM MP+FTWT+LCTNILIV +FPVLT
Sbjct: 188 DYWIWSLQISGVGTTLTGINFLVTILKMRAPGMSFFKMPVFTWTSLCTNILIVISFPVLT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L TLDRY HFFTNDLGGN MMYVNLIWIWGHPEVYILVLPVFG+FSEVV+TFS
Sbjct: 248 VTLVLLTLDRYFNFHFFTNDLGGNAMMYVNLIWIWGHPEVYILVLPVFGVFSEVVATFSK 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY S+V+AT+ IT+LS+IVWLHHFFTMG+GA+VN FFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYVSLVWATLSITILSFIVWLHHFFTMGAGADVNTFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FT+Y+GR+ ILWT+GF++TF IGGM GV+L+VP A+F+LHNSLFLVAHFHNVIIGG
Sbjct: 368 FTIYQGRVHMHSSILWTLGFLVTFSIGGMTGVLLSVPPADFVLHNSLFLVAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +GINYWFPK FG+ L WGK +FWFW+IGF++AF+PLY LG MG+TRR+S
Sbjct: 428 VVFGCFAGINYWFPKLFGFVLNEIWGKRAFWFWIIGFFLAFIPLYFLGLMGMTRRLSQNI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D + IAA G I +GI+ +IQ +S ++R +D+TGDPW+GRTLEWSTSSP
Sbjct: 488 DSEFHMLLCIAAIGACFIGIGIICQVIQFFISIKERRHNLDLTGDPWDGRTLEWSTSSPA 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKN---NFKFPKDKFQDILMPKNTNIGILISIFSLIMGFA 537
P+YNFA IP + D +W K+ N + DI MPKNT +G +ISIFSL GF+
Sbjct: 548 PLYNFAIIPKVEDRDDFWRNKEGQHYNKLINSINYHDIHMPKNTGLGFMISIFSLFFGFS 607
Query: 538 LVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
VWH+ L I+SF+ +I + N+ N Y IS+EEI IE +
Sbjct: 608 AVWHITWLCILSFLAIIISLFINSLNEDTEYTISAEEIKKIEHQ 651
>sp|Q9WWR2|CYOB_PSEPU Ubiquinol oxidase subunit 1 OS=Pseudomonas putida GN=cyoB PE=3 SV=1
Length = 672
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/585 (60%), Positives = 450/585 (76%), Gaps = 1/585 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR Q A + G S GYLPPEHY+QIFTAHGVIMI F+AMP TG++N V
Sbjct: 68 MLLRGFADAIMMRTQLAAATGGSEGYLPPEHYDQIFTAHGVIMIIFMAMPFFTGLMNLAV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLN+LSF++ G +LV ISL +GEFA TGW+ YPPL+GI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DYYIW+LQ++G+GT L+G+N + T++KMRAPGMKLM+MPIFTWT N+LIVA+FP+LT
Sbjct: 188 DYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L L T+DRY+ H FTN+LGGN MMYVNL W WGHPEVYIL+LP FG+FSEV STF+
Sbjct: 248 AALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTSTFAG 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SM+YA+ I +L + VWLHHFFTMG+GA+VN FFG+ TM+ISIPTG K+FNWL
Sbjct: 308 KRLFGHHSMIYASGAIAVLGFAVWLHHFFTMGAGASVNTFFGLATMLISIPTGVKLFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FT+Y+GR+RF PI+WT+GFMITF IGGM GV+LAVP A+F+LHNSLF++AHFHNVIIGG
Sbjct: 368 FTIYQGRLRFTAPIMWTLGFMITFSIGGMTGVLLAVPGADFVLHNSLFVIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
+FG ++G YWFPKAFG+ L WGK +FWFW+ GFYVAFMPLY LGFMG+TRR++H +
Sbjct: 428 AVFGYIAGFAYWFPKAFGFTLNEKWGKAAFWFWISGFYVAFMPLYALGFMGMTRRLNHSD 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
+ + + +A G +LI GI +IQL VS R R+ +D+TGDPW GRTLEWSTSSPP
Sbjct: 488 NPLWEPYLYVAVVGAVLILFGIACQLIQLYVSVRDRNQNLDVTGDPWGGRTLEWSTSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P D+W K+ + P K++ I MP NT+ G+ + +F + GFA +
Sbjct: 548 PFYNFAHMPEKVGLDAWHEAKEAGVAYKPAAKYEAIHMPSNTSTGLFMGLFLTVFGFAFI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIR 584
WH+W L S + T+ + + + + Y + +EE+ IE +R++
Sbjct: 608 WHIWWLVGASLVATIAVFVRHAARDDQGYMVPAEEVARIEGERMK 652
>sp|Q8K994|CYOB_BUCAP Ubiquinol oxidase subunit 1 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cyoB PE=3 SV=1
Length = 659
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/584 (65%), Positives = 463/584 (79%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
MLFRGF DA++MR QQ I+ + G+LPP HY+QIFTAHGVIMIFFVAMPLV G++N +V
Sbjct: 68 MLFRGFVDAILMRTQQVIASSGNTGFLPPHHYDQIFTAHGVIMIFFVAMPLVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW+ GAIL+ +SL IGEFA TGWL YPPLS + SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWLNVSGAILLTLSLGIGEFAQTGWLAYPPLSEVKYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQI+G+GT L+GIN + TI+KMRAPGM MP+FTW ALCTNILIV +FPVLT
Sbjct: 188 DYWIWSLQISGVGTTLTGINFLITILKMRAPGMCFFKMPVFTWAALCTNILIVISFPVLT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L L TLDR HFFTN+ GGN MMYVNLIWIWGHPEVYILVLPVFG+FSEVV+TFS
Sbjct: 248 TTLLLLTLDRCFDFHFFTNNFGGNPMMYVNLIWIWGHPEVYILVLPVFGVFSEVVATFSK 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY S+V+AT+ IT+LS+IVWLHHFFTMG+G+NVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYVSLVWATLAITILSFIVWLHHFFTMGAGSNVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GR+ +LWTIGF+ITF IGGM GV+L++P A+F+LHNSLFLVAHFHNVIIGG
Sbjct: 368 FTMYQGRVHMHSSMLWTIGFLITFSIGGMTGVLLSIPPADFILHNSLFLVAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +GINYWFPK FG+ L WGK +FWFW+IGF+ AFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGINYWFPKLFGFILNELWGKRAFWFWIIGFFTAFMPLYFLGFMGMTRRLSQNI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
DI IAA G +LI +GIL IIQ VS R RH +D+TGDPW+GRTLEWSTSSP
Sbjct: 488 DIEFHFLLSIAAIGAILIGIGILCQIIQFWVSVRDRHINLDVTGDPWDGRTLEWSTSSPA 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPKDKFQDILMPKNTNIGILISIFSLIMGFALVW 540
P+YNFA IP I D +W +KK + K ++ I MPKNT +GI IS FSL+ GF+ VW
Sbjct: 548 PLYNFAIIPHIKNKDDFWELKKQKNQVQKKQYSAIHMPKNTGLGIFISFFSLLFGFSAVW 607
Query: 541 HMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIR 584
++ L+ +SF++ +I +I+ + + Y +S +EI IE + +
Sbjct: 608 NIIWLSFLSFLVVIISLIFKSIDENTEYTVSVKEIESIENRHLE 651
>sp|P98009|QOX1_ACEAC Ubiquinol oxidase subunit 1 OS=Acetobacter aceti GN=cyaA PE=1 SV=1
Length = 664
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/588 (60%), Positives = 449/588 (76%), Gaps = 5/588 (0%)
Query: 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVP 61
LFRGF DA+MMR Q A+++ + GYLPP HY+QIF+AHG IMIFF+AM +TG+ NFIVP
Sbjct: 69 LFRGFADAIMMRTQLALAYAGNPGYLPPHHYDQIFSAHGTIMIFFLAMAFMTGLFNFIVP 128
Query: 62 LQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVD 121
LQIGARDVAFPFLNNLSFWMT+ ILV +SLFIGEF+ GWL YPPLS SPGVGVD
Sbjct: 129 LQIGARDVAFPFLNNLSFWMTAVAFILVNVSLFIGEFSQCGWLAYPPLSENQFSPGVGVD 188
Query: 122 YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTS 181
YYIW++QI+G+GTLL+G+N TI+KMRAPGM MP+FTWTALC +ILI+ AFPVLT
Sbjct: 189 YYIWAVQISGVGTLLTGVNFFVTIVKMRAPGMTWRKMPVFTWTALCASILIMVAFPVLTV 248
Query: 182 VLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241
+ L +DRY G HFFTND GGN MMY+NLIW WGHPEVYILV+P FG+FSEVV FS K
Sbjct: 249 AVGLLGMDRYFGMHFFTNDGGGNQMMYLNLIWAWGHPEVYILVIPAFGVFSEVVPAFSGK 308
Query: 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLF 301
LFGYS+MVYAT I +LS++VW+HHFFTMG+G +VNAFFGI TMIISIPTG K+FNWLF
Sbjct: 309 PLFGYSTMVYATCSIMVLSFLVWVHHFFTMGAGPDVNAFFGIATMIISIPTGIKLFNWLF 368
Query: 302 TMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGV 361
TMY+GRI+F + W +GFMITF IGGM GV+LA+P A+F+LHNSLFL+AHFHN IIGGV
Sbjct: 369 TMYKGRIQFHACMYWAVGFMITFTIGGMTGVMLAIPGADFVLHNSLFLIAHFHNTIIGGV 428
Query: 362 LFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFED 421
FG + G+N+WFPK G+KL+ WGK +FWFW +GFY AF+PLYI+GF G+TRR++H+++
Sbjct: 429 YFGYICGMNFWFPKVMGFKLDETWGKRAFWFWFVGFYCAFVPLYIVGFEGMTRRLNHYDN 488
Query: 422 ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH--TLIDITGDPWNGRTLEWSTSSP 479
+ W +A G +L+ +GI + QL VS R R+ D+TGDPWNGRTLEWSTSSP
Sbjct: 489 PAWHPWLLVAEVGAVLVMLGIACQLTQLYVSIRDRNLPQNRDVTGDPWNGRTLEWSTSSP 548
Query: 480 PPVYNFAFIPLIHQSDSWWYMKKN--NFKFPKDKFQDILMPKNTNIGI-LISIFSLIMGF 536
PPVYNFA +P +H+ D++ K+N + + +++ I MPKNT+ G L +LI GF
Sbjct: 549 PPVYNFAIVPHVHELDTFMLDKENGIDTRQAGAQYEAIHMPKNTSFGSGLCKCSALIFGF 608
Query: 537 ALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIR 584
A VW++W L + + + VI + + +YYI +EE+ IE + R
Sbjct: 609 AAVWYIWWLAAVGLVGVIGTVIARSADKDIDYYIPAEEVARIENEHTR 656
>sp|P98057|COX14_BRAJA Probable cytochrome c oxidase subunit 1 OS=Bradyrhizobium japonicum
(strain USDA 110) GN=blr2715 PE=3 SV=2
Length = 666
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/584 (59%), Positives = 456/584 (78%), Gaps = 5/584 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RG +DA+MMR+QQA+++ S GYLPPEHYNQIF+AHG IMIFFVAMP V G++N +V
Sbjct: 68 MLLRGGSDAIMMRIQQAVAYQSQ-GYLPPEHYNQIFSAHGTIMIFFVAMPFVIGLMNLVV 126
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQ+G RDVAFP LN++ FW+T+ GA+LV +SL IGEFA TGWL +PPLSG++ SPGVGV
Sbjct: 127 PLQLGVRDVAFPTLNSVGFWLTATGALLVNLSLVIGEFARTGWLAFPPLSGLSYSPGVGV 186
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DYY WSLQI+G+GTL++GIN++ T++K+R GM + MP+F WT L +N+LIVAAFP+LT
Sbjct: 187 DYYAWSLQISGVGTLVAGINLVTTVLKLRTKGMNYLRMPMFCWTTLASNLLIVAAFPILT 246
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L + LDRY+G HFFTN+ GGN+MM++NLIW WGHPEVYILVLP FGIFSEVVSTFS
Sbjct: 247 ATLAMLLLDRYLGFHFFTNEAGGNVMMFMNLIWAWGHPEVYILVLPAFGIFSEVVSTFSG 306
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
K LFGY SMV AT+ I ++S++VWLHHFFTMG+G +VNA FGI +MII++PTG KI+NWL
Sbjct: 307 KALFGYRSMVLATMAICVISFMVWLHHFFTMGAGPDVNAIFGIASMIIAVPTGVKIYNWL 366
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY GRIRF P+LW +GFM+TF+IGG+ GV++AVP A+F+LHNS+FLVAHFHNVIIGG
Sbjct: 367 FTMYGGRIRFATPMLWAVGFMVTFIIGGLTGVLVAVPPADFMLHNSMFLVAHFHNVIIGG 426
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
VLFG +G YWFPKAFG++L+ WGK +FWF +GFYV FMPLYI G +G+TRR+ H++
Sbjct: 427 VLFGAFAGFEYWFPKAFGFRLDERWGKLAFWFTFLGFYVTFMPLYIAGMLGMTRRLQHYD 486
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
+ + W +AA G ++ +G++ I+QL+VS R R L D TGDPW+GR+LEW+TSSPP
Sbjct: 487 VAAWRPWMLVAAAGMAVLTIGVICQIMQLVVSIRNREALRDRTGDPWDGRSLEWATSSPP 546
Query: 481 PVYNFAFIPLIHQSDSWWYMK----KNNFKFPKDKFQDILMPKNTNIGILISIFSLIMGF 536
PV+NFAF P + D++W MK + +F+ ++ DI MP+N+ G + + F+ IMGF
Sbjct: 547 PVFNFAFSPDVRGEDAYWDMKTHARQQSFEHDAPEYHDIEMPRNSPTGFICAFFATIMGF 606
Query: 537 ALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEK 580
AL+WH+W + I+ I + + Y I ++E+ I++
Sbjct: 607 ALIWHIWWMVILGGIGAFATFVVFAWRDHDEYVIPADEVARIDR 650
>sp|Q89AA4|CYOB_BUCBP Ubiquinol oxidase subunit 1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=cyoB PE=3 SV=1
Length = 659
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/575 (64%), Positives = 449/575 (78%), Gaps = 10/575 (1%)
Query: 1 MLFRGFTDAVMMRLQQ---AISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIIN 57
MLFRGF DA+MMR+QQ + G+ G+LPP HY+QIFTAHGVIMIFFVAMPLV G++N
Sbjct: 68 MLFRGFADAIMMRMQQFLVSSYHGNGTGFLPPHHYDQIFTAHGVIMIFFVAMPLVIGLMN 127
Query: 58 FIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPG 117
F+VPLQIG+RDVAFPFLNNLS W+T A+L+ +SL IGEFA TGWL YPPLS + SPG
Sbjct: 128 FVVPLQIGSRDVAFPFLNNLSLWLTIFSALLMNVSLGIGEFAQTGWLAYPPLSELQYSPG 187
Query: 118 VGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFP 177
VGVDY+IWSLQI+GIGT L+ IN + TIIKMR+ GM +P+FTWT+ CTNILI+A+FP
Sbjct: 188 VGVDYWIWSLQISGIGTTLTAINFLVTIIKMRSSGMNWFKIPVFTWTSFCTNILIIASFP 247
Query: 178 VLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVST 237
VLT L L TLDRY+G HFFTND GGN+MMYVNLIWIWGHPEVYIL+LPVFGIFSEVV+T
Sbjct: 248 VLTVSLLLLTLDRYLGFHFFTNDFGGNMMMYVNLIWIWGHPEVYILILPVFGIFSEVVAT 307
Query: 238 FSSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIF 297
FSSK LFGY+S+++AT+VIT+LS+IVWLHHFFTMG+ ANVNAFFGITTMIISIPTG KIF
Sbjct: 308 FSSKELFGYTSLIWATIVITILSFIVWLHHFFTMGASANVNAFFGITTMIISIPTGVKIF 367
Query: 298 NWLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVI 357
NWLFTMYRG +R +LWTIGF+ITF IGGMAGV+L++P +F LHNSLFLVAHFHNVI
Sbjct: 368 NWLFTMYRGNVRINSIMLWTIGFLITFSIGGMAGVLLSLPVIDFSLHNSLFLVAHFHNVI 427
Query: 358 IGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMS 417
IGGV+FG +GI YWFPK FG+ L WGK +FW W GF+ AFMPLY LG MG+TRR+S
Sbjct: 428 IGGVVFGCFAGITYWFPKLFGFMLSEKWGKRAFWCWFFGFFCAFMPLYALGLMGMTRRLS 487
Query: 418 HFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTS 477
+ IAA GT+LI +GI+ IIQ+ VS R R+ D +GDPWNGRTLEWST+
Sbjct: 488 QNINPQFHSMLTIAALGTILIFIGIVFQIIQIFVSIRDRNLNRDCSGDPWNGRTLEWSTT 547
Query: 478 SPPPVYNFAFIPLIHQSDSWWYMKKNNFKFPKDK----FQDILMPKNTNIGILISIFSLI 533
SPPP YNFA +P++ DS+W KK+ F +K + MPKNT G LI F+ +
Sbjct: 548 SPPPFYNFAVLPIVQFRDSFWESKKS---FKSNKLPILYTSFHMPKNTKFGFLIGFFAFL 604
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNY 568
+GF+ VW+++ L ISF + + +++ + + +Y
Sbjct: 605 LGFSAVWYIFWLFFISFFVIIYLLVIKSLDTNCDY 639
>sp|P34956|QOX1_BACSU Quinol oxidase subunit 1 OS=Bacillus subtilis (strain 168) GN=qoxB
PE=3 SV=1
Length = 649
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 293/586 (50%), Positives = 396/586 (67%), Gaps = 11/586 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
MLFRG D +MMR Q A+ S +L HYN+IFT HG IMI F+AMP + G+IN +V
Sbjct: 67 MLFRGGVDGLMMRAQLALPNNS---FLDSNHYNEIFTTHGTIMIIFMAMPFLIGLINVVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP+LNNLSFW GA+L IS IG + GW Y PL+ SPG G
Sbjct: 124 PLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGE 183
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ LQIAGIGTL++GIN + TI+KMR GM LM MP+FTWT L T ++IV AFPVLT
Sbjct: 184 NYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLT 243
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L + DR G HFFT + GG M++ NL WIWGHPEVYI++LP FGIFSE++S+F+
Sbjct: 244 VALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFAR 303
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
K+LFGY +MV + + I++LS++VW HHFFTMG+ A+VN+FF ITTM ISIPTG KIFNWL
Sbjct: 304 KQLFGYKAMVGSIIAISVLSFLVWTHHFFTMGNSASVNSFFSITTMAISIPTGVKIFNWL 363
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F P+LW + F+ FVIGG+ GV+LA+ AA++ HN+ FLV+HFH V+I G
Sbjct: 364 FTMYKGRISFTTPMLWALAFIPNFVIGGVTGVMLAMAAADYQYHNTYFLVSHFHYVLIAG 423
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF- 419
+F +G +W+PK FG+KL GK FW ++IGF + F P Y LG G+ RR+ +
Sbjct: 424 TVFACFAGFIFWYPKMFGHKLNERIGKWFFWIFMIGFNICFFPQYFLGLQGMPRRIYTYG 483
Query: 420 -EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTS 477
D + F I+ G ++ +G L I+ + Y R++ +I+GD W GRTL+W+TS
Sbjct: 484 PNDGWTTLNF-ISTVGAFMMGVGFL--ILCYNIYYSFRYSTREISGDSWGVGRTLDWATS 540
Query: 478 SP-PPVYNFAFIPLIHQSDSWWYMKKNNFK-FPKDKFQDILMPKNTNIGILISIFSLIMG 535
S PP YNFA +P + D++ +MK+ + +P+ KF+ I MP N+ +S+ + G
Sbjct: 541 SAIPPHYNFAVLPEVKSQDAFLHMKEEKTELYPESKFKKIHMPSNSGRPFFMSVAFGLAG 600
Query: 536 FALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
F LV+ + + ++ I L+ ++ +F Y YYIS +EI E+K
Sbjct: 601 FGLVFEWYWMGVVGLIGVLLCMVLRSFEYDNGYYISVDEIKETERK 646
>sp|E0TW66|QOX1_BACPZ Quinol oxidase subunit 1 OS=Bacillus subtilis subsp. spizizenii
(strain ATCC 23059 / NRRL B-14472 / W23) GN=qoxB PE=1
SV=1
Length = 649
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 293/586 (50%), Positives = 397/586 (67%), Gaps = 11/586 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
MLFRG D +MMR Q A+ S +L HYN+IFT HG IMI F+AMP + G+IN +V
Sbjct: 67 MLFRGGVDGLMMRAQLALPNNS---FLDSNHYNEIFTTHGTIMIIFMAMPFLIGLINVVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP+LNNLSFW GA+L IS IG + GW Y PL+ SPG G
Sbjct: 124 PLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGE 183
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ LQIAGIGTL++GIN + TI+KMR GM LM MP+FTWT L T ++IV AFPVLT
Sbjct: 184 NYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLT 243
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L + DR G HFFT + GG M++ NL WIWGHPEVYI++LP FGIFSE++S+F+
Sbjct: 244 VALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFAR 303
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
K+LFGY++MV + + I++LS++VW HHFFTMG+ A+VN+FF ITTM ISIPTG KIFNWL
Sbjct: 304 KQLFGYTAMVGSIIAISVLSFLVWTHHFFTMGNSASVNSFFSITTMAISIPTGVKIFNWL 363
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F P+LW + F+ FVIGG+ GV+LA+ AA++ HN+ FLV+HFH V+I G
Sbjct: 364 FTMYKGRISFTTPMLWALAFIPNFVIGGVTGVMLAMAAADYQYHNTYFLVSHFHYVLIAG 423
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF- 419
+F +G +W+PK FG+KL GK FW ++IGF + F P Y LG G+ RR+ +
Sbjct: 424 TVFACFAGFIFWYPKMFGHKLNERIGKWFFWIFMIGFNICFFPQYFLGLQGMPRRIYTYG 483
Query: 420 -EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTS 477
D + F I+ G ++ +G L I+ + Y R++ +I+GD W GR+L+W+TS
Sbjct: 484 PNDGWTTLNF-ISTVGAFMMGVGFL--ILCYNIYYSFRYSTREISGDSWGVGRSLDWATS 540
Query: 478 SP-PPVYNFAFIPLIHQSDSWWYMKKNNFK-FPKDKFQDILMPKNTNIGILISIFSLIMG 535
S PP YNFA +P + D++ +MK+ + +P+ KF+ I MP N+ +S+ I G
Sbjct: 541 SAIPPHYNFAVLPEVKSKDAFHHMKEEKTELYPESKFKKIHMPSNSGRPFFMSVAFGIAG 600
Query: 536 FALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
F LV+ + + ++ I L+ ++ +F Y YYIS +EI E+K
Sbjct: 601 FGLVFEWYWMGVVGLIGVLLCMVLRSFEYDNGYYISVDEIKETERK 646
>sp|Q4L564|QOX1_STAHJ Probable quinol oxidase subunit 1 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=qoxB PE=3 SV=1
Length = 662
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/586 (45%), Positives = 388/586 (66%), Gaps = 11/586 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q I + +L HYN+IF+ HGVIMI F+AMP V G+ N +V
Sbjct: 67 MFVRGGIDALLLRTQLTIPDNT---FLESNHYNEIFSTHGVIMIIFMAMPFVFGLWNVVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP +NN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVMNNISFWLFFVGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+GIGTL++GIN TI++ + P MK M MP+FT T T ++++ AFPV T
Sbjct: 183 NYYLVAIQISGIGTLMTGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPVFT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
VL L T DR GT FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VVLALMTFDRVFGTAFFTVADGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I +PTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGVPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM-SHF 419
V+F ++G+ +W+PK GYKL FW ++IGF V F+P +ILG G+ RR+ ++
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNEKLNAWCFWLFMIGFNVCFLPQFILGLDGMPRRLYTYM 482
Query: 420 EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWSTS 477
+ I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEWST+
Sbjct: 483 PSDGWWLLNVISTIGALLMAVGFLFLVVSIVYSHIKAPR--EATGDNWDGLGRTLEWSTA 540
Query: 478 SP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLIMG 535
S PP YNFA P + D++ MK++ + ++DI MP NT+ G+++ IF L+ G
Sbjct: 541 SAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTHTGVIMGIFMLLGG 600
Query: 536 FALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
F L++ + I + L ++Y +F Y+I + E+ E +
Sbjct: 601 FFLIFETVIPAAICLVGILGSLVYQSFVQDHGYHIPASEVAENEAR 646
>sp|Q49WI3|QOX1_STAS1 Probable quinol oxidase subunit 1 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/586 (45%), Positives = 383/586 (65%), Gaps = 11/586 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+MMR Q AI + +L HYN++F+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALMMRTQLAIPDNT---FLEGNHYNEVFSTHGVIMIIFMAMPFIFGLWNVVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S +G + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFSGMILFNLSFIVGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+GIGTL++GIN TI++ + P MK M MP+FT T T ++++ AFPVLT
Sbjct: 183 NYYLIAIQISGIGTLMTGINFFVTILRCKTPTMKFMEMPMFTVTTFITALIVILAFPVLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FF+ GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VTLALFTTDRIFDTAFFSVANGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG KIFNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKIFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FT+Y+GR+ FE P+L+ +GF+ F+IGG+ GV+L++ AA++ HN+ FLVAHFH ++ G
Sbjct: 363 FTLYKGRVTFESPMLFALGFIPNFLIGGVTGVMLSMAAADYQYHNTYFLVAHFHYTLVAG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM-SHF 419
V+F + + +W+PK G+KL K FW ++IGF V F+P +ILG G+ RR+ ++
Sbjct: 423 VVFACLGALIFWWPKMTGFKLNETLNKWCFWLFMIGFNVCFIPQFILGLDGMPRRLYTYM 482
Query: 420 EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWSTS 477
+ + I+ G LL+A+G + + ++ S+ K + TGD W+ GRTLEW+T+
Sbjct: 483 PEDGWWLLNAISTVGALLMALGFMFLVASIVYSFFKAPR--EATGDNWDGLGRTLEWATA 540
Query: 478 SP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLIMG 535
PP YNFA P + D++ MK++ + + DI MP NT +G + I I G
Sbjct: 541 GAMPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYTDIHMPNNTPVGFWMGILFTIGG 600
Query: 536 FALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
F L++ + II I ++Y +F Y+I + E+ EK+
Sbjct: 601 FFLIFETLVPAIICLIGIFATMVYRSFQIDHGYHIPASEVAETEKR 646
>sp|Q7A182|QOX1_STAAW Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
MW2) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q6GAF3|QOX1_STAAS Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
MSSA476) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q7A699|QOX1_STAAN Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
N315) GN=qoxB PE=1 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q99V37|QOX1_STAAM Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q2YX15|QOX1_STAAB Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q2FZK0|QOX1_STAA8 Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
NCTC 8325) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q2FI18|QOX1_STAA3 Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
USA300) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q5HH24|QOX1_STAAC Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
COL) GN=qoxB PE=3 SV=1
Length = 662
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q6GI24|QOX1_STAAR Probable quinol oxidase subunit 1 OS=Staphylococcus aureus (strain
MRSA252) GN=qoxB PE=3 SV=1
Length = 662
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/588 (45%), Positives = 383/588 (65%), Gaps = 15/588 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+++R Q + +L HYN+IF+ HGVIMI F+AMP + G+ N +V
Sbjct: 67 MFVRGGIDALLIRAQLTVPDNK---FLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVV 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFP LNN+SFW+ G IL +S IG + GW Y PL+G SPG GV
Sbjct: 124 PLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+G+GTL +GIN TI++ + P MK M MP+FT T T ++++ AFP LT
Sbjct: 183 NYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR T FFT GG M++ N W+WGHPEVYI++LP FGI+SE++ TF+
Sbjct: 243 VALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SMV+AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I IPTG K+FNWL
Sbjct: 303 KRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ +
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRL--YT 480
Query: 421 DISLQIWF---QIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWS 475
+ WF I+ G LL+A+G L ++ ++ S+ K + TGD W+ GRTLEW+
Sbjct: 481 YMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPR--EATGDNWDGLGRTLEWT 538
Query: 476 TSSP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLI 533
T+S PP YNFA P + D++ MK++ + ++DI MP NT +G I IF I
Sbjct: 539 TASAIPPKYNFAITPDWNGYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTI 598
Query: 534 MGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
GF L++ + +I +IY +F Y+I + E+ E +
Sbjct: 599 GGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEAR 646
>sp|Q8CPP7|QOX1_STAES Probable quinol oxidase subunit 1 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=qoxB PE=3 SV=1
Length = 662
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/586 (44%), Positives = 384/586 (65%), Gaps = 11/586 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+M+R Q I +L HYN++FT HGVIMI F+AMP + G+ N ++
Sbjct: 67 MFVRGGIDALMLRTQLTIPDNK---FLEANHYNEVFTTHGVIMIIFMAMPFIFGLWNVVI 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQ+GARDVAFP +NN+SFW+ G IL +S +G + GW Y PL+G SPG GV
Sbjct: 124 PLQLGARDVAFPVMNNVSFWLFFAGMILFNLSFIVGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+GIG+L++GIN TI++ + P MK M MP+F+ T T ++++ AFPV T
Sbjct: 183 NYYLIAIQISGIGSLMTGINFFVTILRCKTPTMKFMQMPMFSVTTFITTLIVILAFPVFT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR GT FFT GG M++ N W+WGHPEVYI++LP FG++SE++ TF+
Sbjct: 243 VALALMTADRIFGTQFFTVANGGMPMLWANFFWVWGHPEVYIVILPAFGMYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SM++AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I +PTG K+FNWL
Sbjct: 303 KRLFGHQSMIWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGVPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM-SHF 419
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ ++
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYTYM 482
Query: 420 EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWSTS 477
+ I+ G +L+A+G L + ++ S+ K + TGD W+ GRTLEWST+
Sbjct: 483 PSDGWWLLNFISTIGAVLMAIGFLFLVASIVYSHIKAPR--EATGDNWDGLGRTLEWSTA 540
Query: 478 SP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLIMG 535
S PP YNFA P + D++ MK++ + ++DI MP NT +G + IF I G
Sbjct: 541 SAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWMGIFMTIGG 600
Query: 536 FALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
F L++ + +I I +I+ +F Y+I + E+ E +
Sbjct: 601 FFLIFESIVPALICLAGIFITMIWRSFQIDHGYHIPASEVAETEAR 646
>sp|Q5HQB0|QOX1_STAEQ Probable quinol oxidase subunit 1 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=qoxB PE=3 SV=1
Length = 662
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/586 (44%), Positives = 384/586 (65%), Gaps = 11/586 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
M RG DA+M+R Q I +L HYN++FT HGVIMI F+AMP + G+ N ++
Sbjct: 67 MFVRGGIDALMLRTQLTIPDNK---FLEANHYNEVFTTHGVIMIIFMAMPFIFGLWNVVI 123
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQ+GARDVAFP +NN+SFW+ G IL +S +G + GW Y PL+G SPG GV
Sbjct: 124 PLQLGARDVAFPVMNNVSFWLFFAGMILFNLSFIVGGSPAAGWTNYAPLAG-EFSPGPGV 182
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+YY+ ++QI+GIG+L++GIN TI++ + P MK M MP+F+ T T ++++ AFPV T
Sbjct: 183 NYYLIAIQISGIGSLMTGINFFVTILRCKTPTMKFMQMPMFSVTTFITTLIVILAFPVFT 242
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L T DR GT FFT GG M++ N W+WGHPEVYI++LP FG++SE++ TF+
Sbjct: 243 VALALMTADRIFGTQFFTVANGGMPMLWANFFWVWGHPEVYIVILPAFGMYSEIIPTFAR 302
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFG+ SM++AT I LS++VW+HHFFTMG+GA +N+FF I+TM+I +PTG K+FNWL
Sbjct: 303 KRLFGHQSMIWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGVPTGVKLFNWL 362
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
T+Y+GRI FE P+L+++ F+ F++GG+ GV+LA+ +A++ HN+ FLVAHFH ++ G
Sbjct: 363 LTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTG 422
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM-SHF 419
V+F ++G+ +W+PK GYKL K FWF++IGF V F+P +ILG G+ RR+ ++
Sbjct: 423 VVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYTYM 482
Query: 420 EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN--GRTLEWSTS 477
+ I+ G +L+A+G L + ++ S+ K + TGD W+ GRTLEWST+
Sbjct: 483 PSDGWWLLNFISTIGAVLMAIGFLFLVASIVYSHIKAPR--EATGDNWDGLGRTLEWSTA 540
Query: 478 SP-PPVYNFAFIPLIHQSDSWWYMKKNNFKF-PKDKFQDILMPKNTNIGILISIFSLIMG 535
S PP YNFA P + D++ MK++ + ++DI MP NT +G + IF I G
Sbjct: 541 SAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWMGIFMTIGG 600
Query: 536 FALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKK 581
F L++ + +I I +I+ +F Y+I + E+ E +
Sbjct: 601 FFLIFESIVPALICLAGIFITMIWRSFQIDHGYHIPASEVAETEAR 646
>sp|P24010|COX1_BACSU Cytochrome c oxidase subunit 1 OS=Bacillus subtilis (strain 168)
GN=ctaD PE=3 SV=3
Length = 622
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 255/585 (43%), Positives = 365/585 (62%), Gaps = 17/585 (2%)
Query: 5 GFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQI 64
G +A+ +R+Q A +L + YN++ T HG MIF AMPL+ ++N +VPLQI
Sbjct: 42 GGIEAMFIRIQLA---KPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALMNAVVPLQI 98
Query: 65 GARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYI 124
GARDV+FPFLN L FW+ G I + +S F+G GW Y LS S G G+D+++
Sbjct: 99 GARDVSFPFLNALGFWLFFFGGIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFV 156
Query: 125 WSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLF 184
LQI+G+GTL++GIN +ATII MRAPGM M +P+FTWT + LI+ AFP LT L
Sbjct: 157 LGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLA 216
Query: 185 LSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLF 244
L LDR GT+FF +LGGN +++ +L WI+GHPEVYIL+LP FGIFSEV+ F+ KRLF
Sbjct: 217 LMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVIPVFARKRLF 276
Query: 245 GYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMY 304
GYSSMV+A V+I L ++VW+HH FT G G NA F + TM I+IPTG KIFNWL T++
Sbjct: 277 GYSSMVFAIVLIGFLGFMVWVHHMFTTGLGPIANAIFAVATMAIAIPTGIKIFNWLLTIW 336
Query: 305 RGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFG 364
G +++ +L+ + F+ +FV+GG+ GV+LA AA++ H++ F+VAHFH VIIGGV+FG
Sbjct: 337 GGNVKYTTAMLYAVSFIPSFVLGGVTGVMLAAAAADYQFHDTYFVVAHFHYVIIGGVVFG 396
Query: 365 LMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDIS 423
L++G+++W+PK FG L GK SF + IGF++ F + +G MG+ RR+ F
Sbjct: 397 LLAGVHFWWPKMFGKILHETMGKISFVLFFIGFHLTFFIQHFVGLMGMPRRVYTFLPGQG 456
Query: 424 LQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPW-NGRTLEWSTSSPPPV 482
L+ I+ G +A ++ ++ +I + K + DPW +GRTLEW+ SSPPP
Sbjct: 457 LETGNLISTIGAFFMAAAVILLLVNVIWTSVKGEY---VGADPWHDGRTLEWTVSSPPPE 513
Query: 483 YNFAFIPLIHQSDSWWYMKKNNFK--FPKDKFQDILMPKNTNIGILISIFSLIMGFALVW 540
YNF +P + D W K+ K P + DI MP + + ++IS + F L++
Sbjct: 514 YNFKQLPFVRGLDPLWIEKQAGHKSMTPAEPVDDIHMPNGSILPLIISFGLFVAAFGLLY 573
Query: 541 ---HMWLLTI--ISFIITLIIVIYNTFNYKRNYYISSEEITCIEK 580
+ W L + I IT I ++ + Y+I EE+ +K
Sbjct: 574 RSDYAWGLPVIFIGLGITFITMLLRSVIDDHGYHIHKEELPNDDK 618
>sp|P16262|COX1_BACP3 Cytochrome c oxidase subunit 1 OS=Bacillus PS3 GN=ctaD PE=1 SV=3
Length = 616
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/579 (44%), Positives = 353/579 (60%), Gaps = 20/579 (3%)
Query: 8 DAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGAR 67
+A+ +R+Q A + +L YN++ T HG MIF AMPLV +N +VPLQIGAR
Sbjct: 44 EALFIRIQLA---KPNNDFLVGGLYNEVLTMHGTTMIFLAAMPLVFAFMNAVVPLQIGAR 100
Query: 68 DVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
DVAFPFLN L FWM G + + S F+G GW Y LS + G+D+Y L
Sbjct: 101 DVAFPFLNALGFWMFFFGGLFLNCSWFLGGAPDAGWTSYASLS-LDSKAHHGIDFYTLGL 159
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
QI+G GT++ IN + TII MRAPGM M MP+FTW T+ LI+ AFP LT L
Sbjct: 160 QISGFGTIMGAINFLVTIINMRAPGMTFMRMPMFTWATFVTSALILFAFPPLTVGLIFMM 219
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
+DR G +FF GGN +++ +L W++GHPEVYILVLP FGIFSE+ +TFS KRLFGYS
Sbjct: 220 MDRLFGGNFFNPAAGGNTIIWEHLFWVFGHPEVYILVLPAFGIFSEIFATFSRKRLFGYS 279
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
SMV+ATV+I L ++VW HH FT+G G NA F + TM I++PTG KIFNWLFTM+ G
Sbjct: 280 SMVFATVLIAFLGFMVWAHHMFTVGMGPIANAIFAVATMTIAVPTGVKIFNWLFTMWGGS 339
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
I+F P+ + + F+ +FV+GG+ GV+LA AA++ H+S F+VAHFH VI+GGV+F L++
Sbjct: 340 IKFTTPMHYAVAFIPSFVMGGVTGVMLASAAADYQYHDSYFVVAHFHYVIVGGVVFALLA 399
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIW 427
G +YW+PK FG L GK +FW + IGF++ F + LG G+ RR+ F + Q W
Sbjct: 400 GTHYWWPKMFGRMLNETLGKITFWLFFIGFHLTFFIQHFLGLTGMPRRV--FTYLPHQGW 457
Query: 428 FQ---IAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPW-NGRTLEWSTSSPPPVY 483
I+ G IA + +I ++V+ K + GD W +GRTLEW+ +SPPPVY
Sbjct: 458 ETGNLISTIGAFFIAAATVILLINIVVTTAKGE---KVPGDAWGDGRTLEWAIASPPPVY 514
Query: 484 NFAFIPLIHQSDSWWYMKKNNFK--FPKDKFQDILMPKNTNIGILISIFSLIMGFALVWH 541
NFA PL+ D++W K K P + DI MP ++ + +I+ + F +H
Sbjct: 515 NFAQTPLVRGLDAFWLEKMEGKKELTPAEPLGDIHMPNSSFLPFVIAFGLFVAAFGFTYH 574
Query: 542 M---WLL--TIISFIITLIIVIYNTFNYKRNYYISSEEI 575
W L I+ +ITL + + ++I EE+
Sbjct: 575 NDAGWGLPVAILGLLITLGSMFLRSVIDDHGFHIHKEEV 613
>sp|Q04440|COX1_BACPE Cytochrome c oxidase subunit 1 OS=Bacillus pseudofirmus (strain
OF4) GN=ctaD PE=1 SV=3
Length = 625
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/580 (40%), Positives = 354/580 (61%), Gaps = 17/580 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A+ MR+Q +L + +N+ T HG IM+F A PL+ +N+++PLQIGARD
Sbjct: 42 ALFMRIQLMYP---EMNFLSGQTFNEFITMHGTIMLFLAATPLLFAFMNYVIPLQIGARD 98
Query: 69 VAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQ 128
VAFPF+N L FW+ G +L+ +S F G GW Y PLS G+G+D+Y+ LQ
Sbjct: 99 VAFPFVNALGFWIFFFGGLLLSLSWFFGGGPDAGWTAYVPLSS-RDYGGLGIDFYVLGLQ 157
Query: 129 IAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTL 188
++GIGTL+S IN + TI+ MRAPGM +M +P+F WT+ ++ LI+ AF L + L L L
Sbjct: 158 VSGIGTLISAINFLVTIVNMRAPGMTMMRLPLFVWTSFISSTLILFAFTPLAAGLALLML 217
Query: 189 DRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSS 248
DR +F +GGN++++ ++ WI+GHPEVYILVLP FGI SEV+ FS KRLFGY++
Sbjct: 218 DRLFEAQYFIPSMGGNVVLWQHIFWIFGHPEVYILVLPAFGIISEVIPAFSRKRLFGYTA 277
Query: 249 MVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRI 308
MV+AT++I L ++VW HH FT+G G N+ F + TM I++PTG KIFNWLFTM+ G+I
Sbjct: 278 MVFATMIIAFLGFMVWAHHMFTVGMGPVANSIFAVATMTIAVPTGIKIFNWLFTMWGGKI 337
Query: 309 RFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSG 368
F +L+ F+ TFV+GG+ GV+LA+ ++L H++ F+VAHFH +I+GG++ L +G
Sbjct: 338 TFNTAMLFASSFVPTFVLGGVTGVMLAMAPVDYLYHDTYFVVAHFHYIIVGGIVLSLFAG 397
Query: 369 INYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM-SHFEDISLQIW 427
+ YW+PK FG+ L GK FW + IGF++ F ++LG MG+ RR+ ++ D L +
Sbjct: 398 LFYWYPKMFGHMLNETLGKLFFWVFYIGFHLTFFVQHLLGLMGMPRRVYTYLGDQGLDAF 457
Query: 428 FQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPPPVYNFAF 487
I+ GT ++ G++ +I +I S K + DPW+ RTLEW+T +P P YNFA
Sbjct: 458 NFISTIGTFFMSAGVILLVINVIYSAFKGERV--TVADPWDARTLEWATPTPVPEYNFAQ 515
Query: 488 IPLIHQSDSWWYMK--KNNFKFPKDKFQDILMPKNTNIGILISIFSLIMGFALVW----- 540
P + D +Y K + P + DI MP + + ++SI GF L+
Sbjct: 516 TPQVRSLDPLFYEKIHGDGTMKPAEPVTDIHMPNGSILPFIMSIGLFFAGFGLIMLNMDN 575
Query: 541 ---HMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITC 577
+ W++ I +T + + Y+I +E++
Sbjct: 576 PIINPWIVAIGGLALTFGCMFVRSIKEDHGYHIPAEQVKA 615
>sp|Q5YRP8|COX1A_NOCFA Probable cytochrome c oxidase subunit 1-alpha OS=Nocardia farcinica
(strain IFM 10152) GN=ctaD1 PE=3 SV=1
Length = 581
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/489 (42%), Positives = 302/489 (61%), Gaps = 11/489 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A++MR + A +L PE +NQ+FT HG IM+ F A +V G N I+PLQIGA D
Sbjct: 60 ALLMRGELA---RPGLQFLSPEQFNQLFTMHGTIMLLFYATAIVFGFANIILPLQIGAPD 116
Query: 69 VAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
VAFP LN S+W+ + GA + G A GW Y PL+ I SPGVG D +I L
Sbjct: 117 VAFPRLNAFSYWLYAFGATMATAGFITPGGAADFGWTAYVPLTDILHSPGVGTDLWILGL 176
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
++G+GT+L G+NM+ T++ +RAPGM + MPIFTW T++L++ AFP+LT+ LF
Sbjct: 177 AVSGLGTILGGVNMLTTVVCLRAPGMTMFRMPIFTWNIAVTSVLVLLAFPLLTAALFGLA 236
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR++G H + GG I++Y +L W +GHPEVYI+ LP FGI SE+ FS K +FGY+
Sbjct: 237 YDRHLGGHIYDPATGG-ILLYQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYT 295
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++VYAT+ I LS VW HH + +GA + +F T +I++PTG K FNW+ TM+RG+
Sbjct: 296 TLVYATLGIAALSIAVWAHHMY--ATGAVLLPYFSFMTFLIAVPTGVKFFNWIGTMWRGQ 353
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
+ FE P+LW++GF++TF+ GG++GVILA P +F + +S F+VAHFH V+ G ++F +
Sbjct: 354 LTFESPMLWSLGFLVTFLFGGLSGVILASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFA 413
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQI 426
GI +WFPK G ++ K FW +GF+ F+ + LG G+ RR + +
Sbjct: 414 GIYFWFPKITGRMVDERLAKWHFWATFVGFHTTFLVQHWLGAEGMPRRYADYLPSDGFTT 473
Query: 427 WFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNF 485
I+ G ++ +L FI + SY R+ + DPW G +LEW+T+ PPP +NF
Sbjct: 474 LNTISTIGAFVLGASMLPFIWNIFKSY--RYGEVVTVDDPWGYGNSLEWATTCPPPRHNF 531
Query: 486 AFIPLIHQS 494
+P I
Sbjct: 532 YELPRIRSE 540
>sp|Q5Z0K2|COX1B_NOCFA Probable cytochrome c oxidase subunit 1-beta OS=Nocardia farcinica
(strain IFM 10152) GN=ctaD2 PE=3 SV=1
Length = 588
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/489 (42%), Positives = 305/489 (62%), Gaps = 11/489 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A++MR + A +L E YNQ+FT HG IM+ F A P+V G N ++PLQIGA D
Sbjct: 60 ALLMRGELARP---GLQFLSAEQYNQLFTMHGTIMLLFYATPVVFGFANAVLPLQIGAPD 116
Query: 69 VAFPFLNNLSFWMTSGGAILVMIS-LFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
VAFP LN S+W+ GA + L G A GW Y PLS SPGVG D +I L
Sbjct: 117 VAFPRLNAFSYWLYLFGATMATAGFLTPGGAADFGWTAYTPLSLSEHSPGVGADLWILGL 176
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
++G+GT+L +NMI T++ +RAPGM + MPIFTW L T+IL++ AFP+LT+ L
Sbjct: 177 AVSGLGTILGAVNMITTVVCLRAPGMTMFRMPIFTWNILITSILVLLAFPILTAALMALA 236
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR++G H + GG I+ Y +L W +GHPEVYI+ LP FGI SEV+ FS K +FGY+
Sbjct: 237 YDRHLGGHIYDPANGGAIL-YQHLFWFFGHPEVYIIALPFFGIISEVIPVFSRKPIFGYT 295
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++VYAT+ I LS VW HH + +GA + FF + T +I++PTG K FNW+ TM++G+
Sbjct: 296 ALVYATLAIAALSMAVWAHHMYA--TGAVLLPFFSMMTFLIAVPTGVKFFNWIGTMWKGQ 353
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
I FE P+L+ IGF++TF++GG++GVILA P ++ + +S F+VAHFH V+ G ++F +
Sbjct: 354 ITFETPMLFAIGFIVTFLLGGLSGVILASPPLDWHVTDSYFVVAHFHYVLFGTIVFATFA 413
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQI 426
GI +WFPK G ++ G+ FW +GF++ F+ + LG G+ RR + +
Sbjct: 414 GIYFWFPKLTGRFMDERLGRLHFWTTFLGFHLTFLVQHWLGNEGMPRRYADYLPSDGFTG 473
Query: 427 WFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNF 485
++ G+ L+ + +++F+ S+ R+ + DPW G +LEW+T+ PPP +NF
Sbjct: 474 LNTVSTIGSFLLGISMVTFVWNGFKSF--RYGEVVTVDDPWGAGNSLEWATTCPPPRHNF 531
Query: 486 AFIPLIHQS 494
+P I
Sbjct: 532 YELPRIRSE 540
>sp|Q9K451|COX1B_STRCO Putative cytochrome c oxidase subunit 1-beta OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=ctaD2
PE=3 SV=1
Length = 573
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/471 (43%), Positives = 288/471 (61%), Gaps = 12/471 (2%)
Query: 30 EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILV 89
E YNQ+FT HG IM+ A PL G N I+PLQIGA D+AFP LN LS+WM G ++V
Sbjct: 91 EQYNQLFTVHGTIMMLLFATPLFAGFTNVIMPLQIGAPDLAFPRLNALSYWMYLFGGLMV 150
Query: 90 MIS-LFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKM 148
+ L G AS GW Y PL+ SPG G D + L ++G+ T LS +N I+TII +
Sbjct: 151 VSGFLTPGGAASFGWFAYAPLNSATFSPGPGGDLWTMGLVVSGVSTTLSAVNFISTIICL 210
Query: 149 RAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208
RAPGM + MPIFTW L T+IL++ AFPVLT+ L + DR G H F + G +++
Sbjct: 211 RAPGMTMFRMPIFTWNILFTSILVLPAFPVLTAALLMLEADRKFGAHVF-DAANGGALLW 269
Query: 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHF 268
+L W +GHPEVYI+ LP FGI +E++ FS K +FGY S+V AT+ IT LS +VW HH
Sbjct: 270 QHLFWFFGHPEVYIVALPFFGIVTEIIPVFSRKPIFGYVSLVGATIAITFLSAVVWAHHM 329
Query: 269 FTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGG 328
F +GA + FF + + +I++PTG K FNW+ TM RG + FE P+LW GF++TF++GG
Sbjct: 330 F--ATGAVLLPFFSLMSFLIAVPTGVKFFNWIGTMIRGSLSFETPMLWACGFLVTFLLGG 387
Query: 329 MAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKC 388
M+GV++A P +F L +S F+VAH H V+ G V+F + +G +W+PK G L+ GK
Sbjct: 388 MSGVLIASPPLDFHLTDSYFIVAHLHYVLFGTVVFAMFAGFYFWWPKFTGKLLDERLGKI 447
Query: 389 SFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQIWFQIAAFGTLLIAMGILSFII 447
FW +GF F+ + LG G+ RR + + I++ G L+ + L F+
Sbjct: 448 HFWTLFVGFQTTFLVQHWLGEQGMPRRYADYLAADGFTTLNTISSIGAFLLGLSTLPFLY 507
Query: 448 QLIVSYRKRHTLIDITG--DPWN-GRTLEWSTSSPPPVYNFAFIPLIHQSD 495
+ + H + G DPW GR+LEW+TSSPPP +NF +P I
Sbjct: 508 NVW----RTHQYGEKVGRDDPWGYGRSLEWATSSPPPRHNFTSLPRIRSES 554
>sp|Q9CBQ5|COX1_MYCLE Probable cytochrome c oxidase subunit 1 OS=Mycobacterium leprae
(strain TN) GN=ctaD PE=3 SV=1
Length = 574
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/489 (42%), Positives = 302/489 (61%), Gaps = 11/489 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A++MR + A +L E +NQ+FT HG IM+ F A P+V G N ++PLQIGA D
Sbjct: 59 ALLMRTELA---APGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPD 115
Query: 69 VAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
VAFP LN SFW+ GA + M G A GW Y PL+ SPGVG D +I L
Sbjct: 116 VAFPRLNAFSFWLFLFGAAIGMAGFITPGGAADFGWTAYTPLTDAIHSPGVGGDLWIMGL 175
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+AG+GT+L +NMI T++ +RAPGM + MPIFTW L T+IL++ AFP+LT+ LF
Sbjct: 176 IVAGLGTILGAVNMITTVVCLRAPGMTMFRMPIFTWNILVTSILVLIAFPLLTAALFGLA 235
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR++G H + + G ++++ +L W +GHPEVYI+ LP FGI SE+ FS K +FGY+
Sbjct: 236 ADRHLGAHIY-DAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYT 294
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++VYAT+ I LS VW HH F +GA + FF T +I++PTG K FNW+ TM++G+
Sbjct: 295 TLVYATLSIAALSVAVWAHHMF--ATGAVLLPFFSFMTYLIAVPTGIKFFNWVGTMWKGQ 352
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
+ FE P+L+++GF +TF++GG+ GV+LA P +F + +S F+VAHFH V+ G ++F +
Sbjct: 353 LTFETPMLFSVGFAVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFSTFA 412
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQI 426
GI +WFPK G L+ GK FW IGF+ F+ + LG MG+ RR + + Q
Sbjct: 413 GIYFWFPKMTGRLLDEQLGKLHFWLTFIGFHTTFLVQHWLGDMGMPRRYADYLPTDGFQG 472
Query: 427 WFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNF 485
++ G+ ++ + F+ + S+R + DPW G +LEW+TS PPP +NF
Sbjct: 473 LNVVSTIGSFILGASMFPFVWNVFKSWRYGEVV--TVDDPWGYGNSLEWATSCPPPRHNF 530
Query: 486 AFIPLIHQS 494
+P I
Sbjct: 531 TELPRIRSE 539
>sp|P63852|COX1_MYCTU Probable cytochrome c oxidase subunit 1 OS=Mycobacterium
tuberculosis GN=ctaD PE=3 SV=1
Length = 573
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/489 (42%), Positives = 299/489 (61%), Gaps = 11/489 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A++MR + A +L E +NQ+FT HG IM+ F A P+V G N ++PLQIGA D
Sbjct: 59 ALLMRTELA---APGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPD 115
Query: 69 VAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
VAFP LN SFW+ GA + G A GW Y PL+ SPG G D +I L
Sbjct: 116 VAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGL 175
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+AG+GT+L +NMI T++ MRAPGM + MPIFTW + T+ILI+ AFP+LT+ LF
Sbjct: 176 IVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLA 235
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR++G H + + G ++++ +L W +GHPEVYI+ LP FGI SE+ FS K +FGY+
Sbjct: 236 ADRHLGAHIY-DAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYT 294
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++VYAT+ I LS VW HH F +GA + FF T +I++PTG K FNW+ TM++G+
Sbjct: 295 TLVYATLSIAALSVAVWAHHMF--ATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQ 352
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
+ FE P+L+++GFM+TF++GG+ GV+LA P +F + +S F+VAHFH V+ G ++F +
Sbjct: 353 LTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFA 412
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQI 426
GI +WFPK G L+ GK FW IGF+ F+ + LG G+ RR + + Q
Sbjct: 413 GIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQG 472
Query: 427 WFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNF 485
++ G ++ + F+ + S+R + DPW G +LEW+TS PPP +NF
Sbjct: 473 LNVVSTIGAFILGASMFPFVWNVFKSWRYGEVV--TVDDPWGYGNSLEWATSCPPPRHNF 530
Query: 486 AFIPLIHQS 494
+P I
Sbjct: 531 TELPRIRSE 539
>sp|P63853|COX1_MYCBO Probable cytochrome c oxidase subunit 1 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ctaD PE=3 SV=1
Length = 573
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/489 (42%), Positives = 299/489 (61%), Gaps = 11/489 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A++MR + A +L E +NQ+FT HG IM+ F A P+V G N ++PLQIGA D
Sbjct: 59 ALLMRTELA---APGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPD 115
Query: 69 VAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
VAFP LN SFW+ GA + G A GW Y PL+ SPG G D +I L
Sbjct: 116 VAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGL 175
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+AG+GT+L +NMI T++ MRAPGM + MPIFTW + T+ILI+ AFP+LT+ LF
Sbjct: 176 IVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLA 235
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR++G H + + G ++++ +L W +GHPEVYI+ LP FGI SE+ FS K +FGY+
Sbjct: 236 ADRHLGAHIY-DAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYT 294
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++VYAT+ I LS VW HH F +GA + FF T +I++PTG K FNW+ TM++G+
Sbjct: 295 TLVYATLSIAALSVAVWAHHMF--ATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQ 352
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
+ FE P+L+++GFM+TF++GG+ GV+LA P +F + +S F+VAHFH V+ G ++F +
Sbjct: 353 LTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFA 412
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQI 426
GI +WFPK G L+ GK FW IGF+ F+ + LG G+ RR + + Q
Sbjct: 413 GIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQG 472
Query: 427 WFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNF 485
++ G ++ + F+ + S+R + DPW G +LEW+TS PPP +NF
Sbjct: 473 LNVVSTIGAFILGASMFPFVWNVFKSWRYGEVV--TVDDPWGYGNSLEWATSCPPPRHNF 530
Query: 486 AFIPLIHQS 494
+P I
Sbjct: 531 TELPRIRSE 539
>sp|Q6NFM3|COX1_CORDI Cytochrome c oxidase subunit 1 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=ctaD PE=3 SV=1
Length = 564
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/493 (41%), Positives = 295/493 (59%), Gaps = 10/493 (2%)
Query: 6 FTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIG 65
F +M L +A F +L E +NQ+FT HG IM+ P+V G N+I+PLQIG
Sbjct: 54 FVGGLMALLIRAELFSPGLQFLSNEQFNQLFTLHGTIMLLAFGTPVVWGFSNYILPLQIG 113
Query: 66 ARDVAFPFLNNLSFWMTSGGAILVMISLFI--GEFASTGWLGYPPLSGIAQSPGVGVDYY 123
A DVAFP LN FW+T G ++ M++ F+ G A GW Y PL+ SPGVG D++
Sbjct: 114 APDVAFPRLNAFGFWITQIG-VVAMLAGFLTPGGAADFGWTMYLPLADSIHSPGVGGDFW 172
Query: 124 IWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVL 183
I + G+GT+ S +NMI TI+ MRAPGM + MPIF W +++++ FP+LT+
Sbjct: 173 IIGVGATGVGTIASAVNMITTILCMRAPGMTMFRMPIFCWNIFVASVIVLLIFPLLTAAA 232
Query: 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRL 243
DR +G H + GG I+ + +L W +GHPEVY+L LP FGI SEV+ F+ K +
Sbjct: 233 LGVMYDRKLGGHIYDPGNGGAIL-WQHLFWFFGHPEVYVLALPFFGIVSEVIPVFARKPM 291
Query: 244 FGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTM 303
FGY +V+AT+ I +LS VW HH F +GA + FF T +IS+PTG K FNWL TM
Sbjct: 292 FGYIGLVFATLSIGMLSMAVWAHHMFV--TGAILLPFFSFMTFLISVPTGVKFFNWLGTM 349
Query: 304 YRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLF 363
+RG I +E P+ WT+GF++TF+ GG+ G++LA P +F + ++ F+VAHFH + G V+F
Sbjct: 350 WRGHISWETPMTWTMGFLVTFLFGGLTGIMLASPPLDFHISDTYFVVAHFHYTLFGTVVF 409
Query: 364 GLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDI 422
+G+ +WFPK G L+ GK FW +GF+ F+ + +G G+ RR + + E
Sbjct: 410 ASYAGVYFWFPKMTGRMLDERLGKIHFWITFVGFHGTFLVQHWVGNEGMPRRYADYLESD 469
Query: 423 SLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPP 481
QI+ + L+ + ++ FI + SY R+ I DPW G +LEW+TS PPP
Sbjct: 470 GFTTLNQISTVFSFLLGVSVIPFIWNVFKSY--RYGEIVTVDDPWGYGNSLEWATSCPPP 527
Query: 482 VYNFAFIPLIHQS 494
+NF +P I
Sbjct: 528 RHNFTSLPRIRSE 540
>sp|Q1RI42|COX1_RICBR Probable cytochrome c oxidase subunit 1 OS=Rickettsia bellii
(strain RML369-C) GN=ctaD PE=3 SV=1
Length = 532
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/488 (43%), Positives = 295/488 (60%), Gaps = 8/488 (1%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGAR 67
+++ RL+ A+ G +F + YN + TAH VIM+FF+ MP L G N+ VPL IGA
Sbjct: 50 SLLFRLELAMP-GGTFLNHDFQLYNVLITAHAVIMVFFMIMPALFGGFGNYFVPLLIGAP 108
Query: 68 DVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
D+AFP LNN+SFW+ IL+M S F+ TGW YPPLS I+ PG VD I+SL
Sbjct: 109 DMAFPRLNNISFWLLVPAFILLMGSAFVDGGPGTGWTLYPPLSSISGHPGAAVDMAIFSL 168
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+ G+ ++L IN+I TI MRAPGM L MP+F W+ L T LI+ A PVL + +
Sbjct: 169 HLTGLSSILGSINLIVTIFNMRAPGMGLFKMPLFVWSILVTAFLIILAMPVLGGAITMLL 228
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR GT FF D GG+ +++ +L W +GHPEVYI++LP FGI S+V+STFS K +FGY
Sbjct: 229 TDRNFGTTFFKTDGGGDPVLFQHLFWFFGHPEVYIVILPGFGIVSQVISTFSRKPIFGYQ 288
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
MV A V+I + +IVW HH FT+G N +F TMII+IPTG KIF+W+ TM+ G
Sbjct: 289 GMVGAMVIIGFVGFIVWAHHMFTVGLSYNALIYFTAGTMIIAIPTGIKIFSWIATMWGGS 348
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
I F P+L++IGF+I F IGG+ G+IL+ A + +LH++ ++VAHFH + G LF +
Sbjct: 349 ITFPTPMLFSIGFIILFTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTAFA 408
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIW 427
G YWF K G + GK FW +G + F P + LG G+ RR+ + + + W
Sbjct: 409 GFYYWFGKISGKQYPEILGKIHFWITFVGVNLTFFPQHFLGLAGMPRRIPDYPE-AFAGW 467
Query: 428 FQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPW--NGRTLEWSTSSPPPVYNF 485
+++ G + L F+ IV Y ++ D +PW TLEW+ +SPPP + F
Sbjct: 468 NMVSSIGAGISMAAALYFV--FIVFYTLKYGK-DCPNNPWGDGADTLEWTLTSPPPFHTF 524
Query: 486 AFIPLIHQ 493
P I +
Sbjct: 525 ETPPHIEE 532
>sp|Q4ULU5|COX1_RICFE Probable cytochrome c oxidase subunit 1 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ctaD PE=3 SV=1
Length = 532
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/487 (43%), Positives = 295/487 (60%), Gaps = 8/487 (1%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGAR 67
+++ RL+ A+ G +F + YN + TAH VIM+FF+ MP L G N+ VPL IGA
Sbjct: 50 SLLFRLELAMP-GGTFLNHDFQLYNVLITAHAVIMVFFMIMPALFGGFGNYFVPLLIGAP 108
Query: 68 DVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
D+AFP LNN+SFW+ IL+M S F+ TGW YPPLS ++ PG VD I+SL
Sbjct: 109 DMAFPRLNNISFWLLVTAFILLMGSAFVDGGPGTGWTLYPPLSNLSGHPGAAVDMAIFSL 168
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+ G+ ++L IN+I TI MRAPGM L MP+F W+ L T LI+ A PVL + +
Sbjct: 169 HLTGLSSILGSINLIVTIFNMRAPGMGLFKMPLFVWSILVTAFLIILAMPVLGGAITMLL 228
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR GT+FF D GG+ +++ +L W +GHPEVYI++LP FGI S+V+STFS K +FGY
Sbjct: 229 TDRNFGTNFFKPDGGGDPVLFQHLFWFFGHPEVYIVILPGFGIVSQVISTFSRKPIFGYQ 288
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
MV A V+I + +IVW HH FT+G N +F TMII++PTG KIF+W+ TM+ G
Sbjct: 289 GMVGAMVIIGFVGFIVWAHHMFTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGS 348
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
I F P+L++IGF+I F IGG+ G+IL+ A + +LH++ ++VAHFH + G LF +
Sbjct: 349 ITFPTPMLFSIGFIILFTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTAFA 408
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIW 427
G YWF K G + GK FW IG + F P + LG G+ RR+ + + + W
Sbjct: 409 GFYYWFGKISGKQYPEILGKIHFWITFIGVNLTFFPQHFLGLAGMPRRIPDYPE-AFAGW 467
Query: 428 FQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPW--NGRTLEWSTSSPPPVYNF 485
+++ G + L F+ IV Y ++ D +PW TLEW+ +SPPP + F
Sbjct: 468 NMVSSIGAGISMAAALYFV--FIVFYTLKYGK-DCPNNPWGDGADTLEWTLTSPPPFHTF 524
Query: 486 AFIPLIH 492
P I
Sbjct: 525 ETPPHIE 531
>sp|Q73VC3|COX1_MYCPA Probable cytochrome c oxidase subunit 1 OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=ctaD
PE=3 SV=1
Length = 581
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 203/489 (41%), Positives = 300/489 (61%), Gaps = 11/489 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARD 68
A++MR + A +L E +NQ+FT HG IM+ A P+V G N ++PLQIGA D
Sbjct: 59 ALLMRTELA---APGLQFLSNEQFNQLFTMHGTIMLLLYATPVVFGFANLVLPLQIGAPD 115
Query: 69 VAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
VAFP LN SFW+ G ++ + G A GW Y PLS SPG G D +I L
Sbjct: 116 VAFPRLNAFSFWLFLFGGLIAASGFIVPGGAADFGWTAYTPLSDAVHSPGAGGDLWITGL 175
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+AG+GT+L +NMI T++ MRAPGM + MPIFTW L T+ILI+ AFP+LT+ LF
Sbjct: 176 IVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILILIAFPILTAALFGLA 235
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR++G H + + G ++++ +L W +GHPEVYI+ LP FGI +E++ F+ K +FGY+
Sbjct: 236 ADRHLGAHVY-DAANGGVLLWQHLFWFFGHPEVYIIALPFFGIITEIIPVFARKPVFGYT 294
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++VYAT+ I LS VW HH F +GA + FF T +I++PTG K FNW+ TM++G+
Sbjct: 295 TLVYATLSIAALSVAVWAHHMF--ATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQ 352
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
+ FE P+L+ +GF++TF++GG+ GV+LA P +F + ++ F+VAHFH V+ G ++F +
Sbjct: 353 LTFETPMLFCVGFLLTFLLGGLTGVMLASPPLDFHVTDTYFVVAHFHYVLFGTIVFATFA 412
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQI 426
G+ +WFPK G L+ GK FW IGF+ F+ + LG +G+ RR + + Q
Sbjct: 413 GVYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDLGMPRRYADYLPSDGFQP 472
Query: 427 WFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNF 485
+ + G ++ + F+ + S+R + DPW G +LEW+TS PPP +NF
Sbjct: 473 YNVASTVGAFILGASMFPFVWNVFKSWRYGEVV--TVDDPWGYGNSLEWATSCPPPRHNF 530
Query: 486 AFIPLIHQS 494
+P I
Sbjct: 531 TELPRIRSE 539
>sp|Q92I67|COX1_RICCN Probable cytochrome c oxidase subunit 1 OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=ctaD PE=3 SV=1
Length = 532
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 208/487 (42%), Positives = 294/487 (60%), Gaps = 8/487 (1%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGAR 67
+++ RL+ A+ G +F + YN + TAH VIM+FF+ MP L G N+ VPL IGA
Sbjct: 50 SLLFRLELAMP-GGTFLNHDFQLYNVLITAHAVIMVFFMIMPALFGGFGNYFVPLLIGAP 108
Query: 68 DVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
D+AFP LNN+SFW+ +L+M S F+ TGW YPPLS ++ PG VD I+SL
Sbjct: 109 DMAFPRLNNISFWLLVPAFLLLMGSAFVDGGPGTGWTLYPPLSNLSGHPGAAVDMAIFSL 168
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+ G+ ++L IN+I TI MRAPGM L MP+F W+ L T LI+ A PVL + +
Sbjct: 169 HLTGLSSILGSINLIVTIFNMRAPGMGLFKMPLFVWSILVTAFLIILAMPVLGGAITMLL 228
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR GT FF D GG+ +++ +L W +GHPEVYI++LP FGI S+V+STFS K +FGY
Sbjct: 229 TDRNFGTTFFKPDGGGDPVLFQHLFWFFGHPEVYIVILPGFGIVSQVISTFSRKPIFGYQ 288
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
M+ A V+I + +IVW HH FT+G N +F TMII++PTG KIF+W+ TM+ G
Sbjct: 289 GMIGAMVIIGFVGFIVWAHHMFTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGS 348
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
I F P+L++IGF+I F IGG+ G+IL+ A + +LH++ ++VAHFH + G LF +
Sbjct: 349 ITFPTPMLFSIGFIILFTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTAFA 408
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIW 427
G YWF K G + GK FW IG + F P + LG G+ RR+ + + + W
Sbjct: 409 GFYYWFGKISGKQYPDILGKIHFWITFIGVNLTFFPQHFLGLAGMPRRIPDYPE-AFAGW 467
Query: 428 FQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPW--NGRTLEWSTSSPPPVYNF 485
+++ G + L F+ IV Y ++ D +PW TLEW+ +SPPP + F
Sbjct: 468 NMVSSIGAGISMFAALYFV--FIVFYTLKYGK-DCPNNPWGEGADTLEWTLTSPPPFHTF 524
Query: 486 AFIPLIH 492
P I
Sbjct: 525 ETPPHIE 531
>sp|Q79VD7|COX1_CORGL Cytochrome c oxidase subunit 1 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=ctaD PE=1 SV=1
Length = 584
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 200/492 (40%), Positives = 295/492 (59%), Gaps = 8/492 (1%)
Query: 6 FTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIG 65
F +M L +A F +L E +NQ+FT HG +M+ P+V G N+++PLQIG
Sbjct: 54 FLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFANYVLPLQIG 113
Query: 66 ARDVAFPFLNNLSFWMTSGGAILVMIS-LFIGEFASTGWLGYPPLSGIAQSPGVGVDYYI 124
A DVAFP LN FW+T+ G + ++ L G A GW Y PLS SPG+G D +I
Sbjct: 114 APDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWI 173
Query: 125 WSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLF 184
+ GIG++ S INM+ TI+ +RAPGM + MPIFTW ++L + FP+L +
Sbjct: 174 VGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAAL 233
Query: 185 LSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLF 244
DR +G H + GG+ +++ +L W +GHPEVY+L LP FGI SE++ FS K +F
Sbjct: 234 GVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFSRKPMF 292
Query: 245 GYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMY 304
GY +++AT+ I LS VW HH F +GA + FF T +IS+PTG K FNW+ TM+
Sbjct: 293 GYVGLIFATLSIGALSMAVWAHHMFV--TGAVLLPFFSFMTFLISVPTGVKFFNWVGTMW 350
Query: 305 RGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFG 364
+G I +E P++W++GFM TF+ GG+ G++LA P +F L +S FL+AHFH + G V+F
Sbjct: 351 KGHITWETPMIWSVGFMATFLFGGLTGIMLASPPLDFHLADSYFLIAHFHYTLFGTVVFA 410
Query: 365 LMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS- 423
+G+ +WFPK G ++ GK FW +GF+ F+ + +G MG+ RR + + D
Sbjct: 411 SCAGVYFWFPKMTGRMMDERLGKIHFWLTFVGFHGTFLIQHWVGNMGMPRRYADYLDSDG 470
Query: 424 LQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPV 482
I+ QI+ + L+ + ++ FI + S+ R+ + DPW G +LEW+TS PPP
Sbjct: 471 FTIYNQISTVFSFLLGLSVIPFIWNVFKSW--RYGELVTVDDPWGYGNSLEWATSCPPPR 528
Query: 483 YNFAFIPLIHQS 494
+NFA +P I
Sbjct: 529 HNFASLPRIRSE 540
>sp|Q828X4|COX1B_STRAW Putative cytochrome c oxidase subunit 1-beta OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=ctaD2 PE=3 SV=1
Length = 563
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 283/470 (60%), Gaps = 10/470 (2%)
Query: 30 EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILV 89
+NQ+FT HG IM+ A P G N I+PLQIG+ DVAFP LN LS+W+ G ++V
Sbjct: 71 NQFNQLFTLHGTIMLLLFATPTFAGFANEIMPLQIGSPDVAFPRLNMLSYWLFLFGGLIV 130
Query: 90 MISLFIGEF-ASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKM 148
+ SL + A+ GW Y PL+ + +SPG+G D +I L +AG GT+L +N + TII M
Sbjct: 131 LGSLAVPSGPAAFGWFAYAPLNSLERSPGIGADMWIMGLALAGFGTILGSVNFLTTIIGM 190
Query: 149 RAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208
RAPGM + MPIFTW L T+IL++ AFPVL + L + DR G+ F + G +++
Sbjct: 191 RAPGMTMFRMPIFTWNTLFTSILVLMAFPVLAAALLVLEADRRFGSQVF-DAANGGALLW 249
Query: 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHF 268
+L W +GHPEVYI+ LP FGI +E++ FS K +FGY +++ AT IT LS +VW HH
Sbjct: 250 QHLFWFFGHPEVYIIALPFFGIITEIIPVFSRKPIFGYLTLIGATAAITGLSVVVWAHHM 309
Query: 269 FTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGG 328
F +GA + FF + +I++PTG K FNW TM +G + FE P+LW GF+++F+ GG
Sbjct: 310 FA--TGAVLLPFFSFMSFLIAVPTGVKFFNWTGTMLKGSLSFETPMLWATGFLVSFLFGG 367
Query: 329 MAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKC 388
+ GVILA P +F + +S F+VAHFH V+ G V+F G +W+PK G L+ GK
Sbjct: 368 LTGVILASPPLDFHVTDSYFVVAHFHYVVFGTVVFATFGGFYFWWPKFTGKMLDERLGKI 427
Query: 389 SFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQIWFQIAAFGTLLIAMGILSFII 447
FW +GF+ F+ + LG G+ RR + + ++ G L+ M L F+
Sbjct: 428 HFWTLFVGFHTTFLVQHWLGAEGMPRRYADYLAADGFTALNTLSTIGAFLLGMSTLPFLY 487
Query: 448 QLIVSYR-KRHTLIDITGDPWN-GRTLEWSTSSPPPVYNFAFIPLIHQSD 495
+ + R R +D DPW GR+LEW+TS PPP +NF +P +
Sbjct: 488 NVWKTARYGRKVEVD---DPWGFGRSLEWTTSCPPPRHNFVTLPRVRSES 534
>sp|Q8FMT1|COX1_COREF Cytochrome c oxidase subunit 1 OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=ctaD PE=3 SV=1
Length = 580
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 202/492 (41%), Positives = 292/492 (59%), Gaps = 8/492 (1%)
Query: 6 FTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIG 65
F +M L +A F +L E +NQ+FT HG +M+ P+V G N+++PLQIG
Sbjct: 54 FLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFANYVLPLQIG 113
Query: 66 ARDVAFPFLNNLSFWMTS-GGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYI 124
A DVAFP LN FW+T+ GG ++ L G A GW Y PLS SPG+G D +I
Sbjct: 114 APDVAFPRLNAFGFWITTVGGVAMLAGFLTPGGAADFGWTMYSPLSDSIHSPGIGSDMWI 173
Query: 125 WSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLF 184
+ GIG++ S INM+ TI+ +RAPGM + MP+FTW T++L + FP+L +
Sbjct: 174 IGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPVFTWNIFVTSVLALLIFPLLLAAAL 233
Query: 185 LSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLF 244
DR +G H + GG+I+ + +L W +GHPEVY+L LP FGI SE++ FS K +F
Sbjct: 234 GVLYDRKLGGHIYDPANGGSIL-WQHLFWFFGHPEVYVLALPFFGIISEIIPVFSRKPMF 292
Query: 245 GYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMY 304
GY +V+AT+ I LS VW HH F +GA + FF T +IS+PTG K FNW+ TM+
Sbjct: 293 GYIGLVFATLSIGALSMAVWAHHMFV--TGAVLLPFFSFMTFLISVPTGVKFFNWVGTMW 350
Query: 305 RGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFG 364
+G I +E P++W +GFM TF+ GG+ G++LA P +F L +S FL+AHFH + G V+F
Sbjct: 351 KGHITWETPMIWAVGFMSTFLFGGLTGIMLASPPLDFHLSDSYFLIAHFHYTLFGTVVFA 410
Query: 365 LMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS- 423
+G+ +WFPK G ++ GK FW +GF+ FM + LG MG+ RR + + D
Sbjct: 411 SCAGVYFWFPKMTGRMMDERLGKIHFWLTFVGFHGTFMVQHWLGNMGMPRRYADYLDSDG 470
Query: 424 LQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPV 482
QI+ + L+ + ++ F+ + S+ R+ + DPW G +LEW+TS PPP
Sbjct: 471 FTTLNQISTIFSFLLGLSVIPFVWNVFKSW--RYGELVTVDDPWGYGNSLEWATSCPPPR 528
Query: 483 YNFAFIPLIHQS 494
+NF +P I
Sbjct: 529 HNFTSLPRIRSE 540
>sp|Q9X813|COX1A_STRCO Probable cytochrome c oxidase subunit 1-alpha OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=ctaD1
PE=3 SV=1
Length = 578
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 283/471 (60%), Gaps = 12/471 (2%)
Query: 30 EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILV 89
E +NQ FT HG IM+ A PL G N+I+PLQIGA DVAFP LN ++W+ G+ +
Sbjct: 81 EQFNQAFTMHGTIMLLMFATPLFAGFANWIMPLQIGAPDVAFPRLNMFAYWLYLFGSTIA 140
Query: 90 MISLFIGEFAST-GWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKM 148
+ + A+ GW Y PLS SPG+G D +I L +G GT+L +N I TII M
Sbjct: 141 VGGFLTPQGAADFGWFAYSPLSDAVHSPGIGGDLWIMGLAFSGFGTILGSVNFITTIICM 200
Query: 149 RAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208
RAPGM + MPIFTW L T +L++ AFPVL + LF DR G H F + GG +++
Sbjct: 201 RAPGMTMFRMPIFTWNVLLTGVLVLLAFPVLAAALFALEADRKFGAHIFDSSNGG-ALLW 259
Query: 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHF 268
+L W +GHPEVYI+ LP FGI SE++ FS K +FGY ++ AT+ I LS VW HH
Sbjct: 260 QHLFWFFGHPEVYIIALPFFGIVSEIIPVFSRKPIFGYMGLIGATIAIAGLSVTVWAHHM 319
Query: 269 FTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGG 328
+ +G + FF T +I++PTG K FNW+ TM++G + FE P+LW+ GF+ITF+ GG
Sbjct: 320 YV--TGGVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGSLSFETPMLWSTGFLITFLFGG 377
Query: 329 MAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKC 388
+ GVILA P +F + +S F+VAHFH V+ G V+F + +G ++W+PK G L+ GK
Sbjct: 378 LTGVILASPPLDFHVSDSYFVVAHFHYVVFGTVVFAMFAGFHFWWPKFTGKMLDERLGKI 437
Query: 389 SFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQIWFQIAAFGTLLIAMGILSFII 447
+FW +GF+ F+ + LG G+ RR + + I+ + L+ M IL F
Sbjct: 438 TFWTLFVGFHGTFLVQHWLGAEGMPRRYADYLAADGFTALNTISTISSFLLGMSILPFFY 497
Query: 448 QL--IVSYRKRHTLIDITGDPWN-GRTLEWSTSSPPPVYNFAFIPLIHQSD 495
+ Y K+ I++ DPW GR+LEW+TS PPP +NF +P I
Sbjct: 498 NIWKTAKYGKK---IEVD-DPWGYGRSLEWATSCPPPRHNFLTLPRIRSES 544
>sp|Q82AK9|COX1A_STRAW Probable cytochrome c oxidase subunit 1-alpha OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=ctaD1 PE=3 SV=1
Length = 579
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 201/470 (42%), Positives = 281/470 (59%), Gaps = 10/470 (2%)
Query: 30 EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILV 89
E +NQ FT HG IM+ A PL G N+I+PLQIGA DVAFP LN ++W+ G+++
Sbjct: 81 EQFNQAFTMHGTIMLLMFATPLFAGFANWIMPLQIGAPDVAFPRLNMFAYWLYLFGSLIA 140
Query: 90 MISLFIGEFAST-GWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKM 148
+ + A+ GW Y PLS +SPG+G D +I L +G GT+L +N I TII M
Sbjct: 141 VGGFLTPQGAADFGWFAYSPLSDAVRSPGIGADMWIMGLAFSGFGTILGSVNFITTIICM 200
Query: 149 RAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208
RAPGM + MPIF W L T +L++ AFPVL + LF DR G H F GG +++
Sbjct: 201 RAPGMTMFRMPIFVWNVLLTGVLVLLAFPVLAAALFALEADRKFGAHVFDAANGG-ALLW 259
Query: 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHF 268
+L W +GHPEVYI+ LP FGI SEV+ FS K +FGY ++ AT+ I LS VW HH
Sbjct: 260 QHLFWFFGHPEVYIIALPFFGIISEVIPVFSRKPMFGYMGLIGATIAIAGLSVTVWAHHM 319
Query: 269 FTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGG 328
+ +G + FF T +I++PTG K FNW+ TM++G + FE P+LW GF+ITF GG
Sbjct: 320 YV--TGGVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGSLSFETPMLWATGFLITFTFGG 377
Query: 329 MAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKC 388
+ GVILA P +F + +S F+VAHFH V+ G V+F + SG +YW+PK G L+ GK
Sbjct: 378 LTGVILASPPMDFHVSDSYFVVAHFHYVVFGTVVFAMFSGFHYWWPKFTGKMLDERLGKI 437
Query: 389 SFWFWLIGFYVAFMPLYILGFMGVTRRMSHF-EDISLQIWFQIAAFGTLLIAMGILSFII 447
+FW +GF+ F+ + LG G+ RR + + I+ + L+ + IL F+
Sbjct: 438 TFWTLFVGFHGTFLIQHWLGAEGMPRRYADYLAADGFTALNTISTICSFLLGLSILPFLY 497
Query: 448 QLIVSYR-KRHTLIDITGDPWN-GRTLEWSTSSPPPVYNFAFIPLIHQSD 495
+ + + + +D DPW GR+LEW+TS PPP +NF +P I
Sbjct: 498 NVWKTAKYGKPVGVD---DPWGYGRSLEWATSCPPPRHNFLTLPRIRSES 544
>sp|O54069|COX1_RICPR Probable cytochrome c oxidase subunit 1 OS=Rickettsia prowazekii
(strain Madrid E) GN=ctaD PE=3 SV=1
Length = 534
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 205/488 (42%), Positives = 290/488 (59%), Gaps = 12/488 (2%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGAR 67
+++ RL+ A+ G +F + YN + T H +IM+FF+ MP L +G N+ VPL IGA
Sbjct: 52 SLLFRLELAMP-GGTFLNHNFQLYNVLITVHAIIMVFFMIMPALFSGFGNYFVPLLIGAP 110
Query: 68 DVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
D+AFP LNN+SFW+ +L++ S FI TGW YPPLS + G VD I+SL
Sbjct: 111 DMAFPRLNNISFWLLIPAFLLLISSTFIDGGPGTGWTLYPPLSNLNGHTGAAVDVAIFSL 170
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+ G+ ++L IN+I TI MR PGM L MP+F W+ L T LI+ A PVL+ + +
Sbjct: 171 HLTGLSSILGSINLIVTIFNMRTPGMGLFKMPLFVWSILVTAFLIILAMPVLSGAITMLL 230
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
DR GT FF D GG+ +++ +L W +GHPEVYI++LP FGI S+V+STFS K +FGY
Sbjct: 231 TDRNFGTTFFKPDGGGDPLLFQHLFWFFGHPEVYIVILPGFGIVSQVISTFSRKPIFGYQ 290
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
MV A V+I + +IVW HH FT+G N +F TMII++PTG KIF+W+ TM+ G
Sbjct: 291 GMVGAMVIIGFVGFIVWAHHMFTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGS 350
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
I F P+L+ IGF+I F IGG+ G+IL+ A + +LH++ ++VAHFH + G LF +
Sbjct: 351 ITFPTPMLFAIGFIILFTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTAFA 410
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIW 427
G YWF K G + GK FW IG + F P + LG G+ RR+ + + + W
Sbjct: 411 GFYYWFGKISGKQYPEILGKIHFWITFIGVNLTFFPQHFLGLAGMPRRIPDYPE-AFAGW 469
Query: 428 FQIAAFGT--LLIAMGILSFIIQLIVSYRKRHTLIDITGDPW--NGRTLEWSTSSPPPVY 483
+++ G + A FI+ + Y K + T +PW TLEW +SPPP +
Sbjct: 470 NMVSSIGAGISIFAAFYFVFIVFYTLKYGK-----NCTANPWGDGADTLEWKLNSPPPFH 524
Query: 484 NFAFIPLI 491
F P I
Sbjct: 525 TFETPPHI 532
>sp|P50676|COX1_THEVL Cytochrome c oxidase subunit 1 OS=Thermosynechococcus vulcanus
GN=ctaD PE=3 SV=1
Length = 552
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/512 (37%), Positives = 298/512 (58%), Gaps = 21/512 (4%)
Query: 9 AVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPL-VTGIINFIVPLQIGAR 67
AV MR + A + +L P YN T HG IMIF +P + G N++VPL IGAR
Sbjct: 55 AVAMRTELATA---DSDFLDPNLYNAFLTNHGTIMIFLWVVPAAIGGFGNYLVPLMIGAR 111
Query: 68 DVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSL 127
D+AFP LN L+FW+ L++ S G A GW YPPLS I + +I ++
Sbjct: 112 DMAFPRLNALAFWLNPPAGALLLASFLFGG-AQAGWTSYPPLSTITAT--TAQSMWILAI 168
Query: 128 QIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLST 187
+ G ++L +N I TI KM+ P M+ +P+F W L T++L + + PVL + L L
Sbjct: 169 ILVGTSSILGSVNFIVTIWKMKVPSMRWNQLPLFCWAMLATSLLALVSTPVLAAGLILLL 228
Query: 188 LDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYS 247
D GT F+ D GGN+++Y +L W + HP VY+++LP+FGI SEV+ + K +FGY
Sbjct: 229 FDINFGTSFYKPDAGGNVVIYQHLFWFYSHPAVYLMILPIFGIMSEVIPVHARKPIFGYQ 288
Query: 248 SMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR 307
++ Y+++ I + VW+HH FT G+ + FF I+T+I+++PTG KIF+W+ T++ G+
Sbjct: 289 AIAYSSLAICCVGLFVWVHHMFTSGTPPWMRMFFTISTLIVAVPTGVKIFSWVATLWGGK 348
Query: 308 IRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMS 367
IR +L+ IG M FV+GG++GV L + +H++ ++VAHFH V+ GG +FGL +
Sbjct: 349 IRLNSAMLFAIGLMSMFVLGGLSGVTLGTAPVDIHVHDTYYVVAHFHYVLFGGSVFGLYA 408
Query: 368 GINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMS----HFEDIS 423
GI +WFPK G L+ G F LIG F+P++ LG G+ RR++ FE ++
Sbjct: 409 GIYHWFPKMTGRLLDERLGILHFVLTLIGTNWTFLPMHELGLKGMPRRVAMYDPQFEPVN 468
Query: 424 LQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGD-PWNGRTLEWSTSSPPPV 482
L I G ++A I+ F+I +I S+ K I GD PW G TLEW+TSSPP +
Sbjct: 469 L-----ICTIGAFVLAFSIIPFLINIIWSWNKG----KIAGDNPWGGLTLEWTTSSPPLI 519
Query: 483 YNFAFIPLIHQSDSWWYMKKNNFKFPKDKFQD 514
N+ +P++ + + +++ +D +
Sbjct: 520 ENWEVLPVVTKGPYDYGIERRQESTDEDHDEQ 551
>sp|P48867|COX1_CYACA Cytochrome c oxidase subunit 1 OS=Cyanidium caldarium GN=COX1 PE=3
SV=1
Length = 526
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/475 (39%), Positives = 289/475 (60%), Gaps = 14/475 (2%)
Query: 30 EHYNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAIL 88
+ YN + TAHG++++FF+ +P L+ G N+ VPL IGA D+AFP LNN+SFW+ IL
Sbjct: 56 QLYNVLVTAHGLLILFFMVIPTLMGGFGNWFVPLIIGAPDMAFPRLNNISFWLMPPSLIL 115
Query: 89 VMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKM 148
++ S F+ A TGW YPPLS + G VD I+SL I+GI ++L N IATI +
Sbjct: 116 LLASAFVETGAGTGWTLYPPLSSVQAHSGGAVDLAIFSLHISGISSILGASNFIATIFNI 175
Query: 149 RAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208
R PG L +P+F W+ L T +I+ FPVL + + DR T FF + GG+ +++
Sbjct: 176 RNPGQNLYRIPLFVWSVLVTAFIILLTFPVLAGAITILLTDRNFNTSFFDSSGGGDPVLF 235
Query: 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHF 268
+L W +GHPEVYILVLP FGI S+VVSTFS K +FGY ++YA + I +L +VW HH
Sbjct: 236 QHLFWFFGHPEVYILVLPAFGIISQVVSTFSRKPVFGYVGIIYALISIRILGSMVWAHHM 295
Query: 269 FTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGG 328
FT+G + A+F +++I++PTG K+F+W+ TM++G I + P+L+ IGF+I F +GG
Sbjct: 296 FTIGMDVDTRAYFTAASLLIAVPTGIKVFSWIATMWKGSISLKTPMLFAIGFIILFTVGG 355
Query: 329 MAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKC 388
+ G+++A + LH++ ++VAHFH V+ G LFG+ +G YW K G + G+
Sbjct: 356 LTGLVVANSGLDISLHDTYYVVAHFHYVLSIGALFGIFAGFYYWIGKICGKQYSETLGQI 415
Query: 389 SFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQ 448
FW IG + F P++ LG G+ RR+ + D + + W ++ +G + +G + F
Sbjct: 416 HFWITFIGVNLTFFPMHFLGLAGIPRRIPDYPD-AYEGWNIVSTYGAKVSIIGTILFFYV 474
Query: 449 LIVSYRKRHTLIDITGDPW---------NGRTLEWSTSSPPPVYNFAFIPLIHQS 494
+ +++ + LI +PW + RT EW +SPP + F IP+I ++
Sbjct: 475 VYLAF--TNGLIS-EPNPWSLRRERLDSSSRTTEWLIASPPIYHTFNEIPVIKET 526
>sp|Q35101|COX1_METSE Cytochrome c oxidase subunit 1 OS=Metridium senile GN=COI PE=3 SV=1
Length = 530
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/476 (41%), Positives = 291/476 (61%), Gaps = 9/476 (1%)
Query: 27 LPPEH-YNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSG 84
L +H YN I TAH IMIFF+ MP ++ G N++VPL IGA D+AFP LNN+SFW+
Sbjct: 51 LGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRLNNISFWLLPP 110
Query: 85 GAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIAT 144
IL++ S F+ + TGW YPPLS I G VD I+SL +AG ++L +N I T
Sbjct: 111 ALILLLGSAFVEQGVGTGWTVYPPLSAIQAHSGGAVDMAIFSLHLAGASSILGAMNFITT 170
Query: 145 IIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGN 204
I MRAPGM + +P+F W+ L T L++ + PVL + + DR T FF GG+
Sbjct: 171 IFNMRAPGMTMDRLPLFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGD 230
Query: 205 IMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK-RLFGYSSMVYATVVITLLSYIV 263
+++ +L W +GHPEVYIL+LP FG+ S+++ TFS+K ++FGY MVYA + I +L +IV
Sbjct: 231 PILFQHLFWFFGHPEVYILILPGFGMVSQIIPTFSAKNQIFGYLGMVYAMLSIGILGFIV 290
Query: 264 WLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMIT 323
W HH FT+G + A+F TMII++PTG K+F+WL T+Y G +R + P+LW IGF+
Sbjct: 291 WAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIYGGAVRLDTPMLWAIGFVFL 350
Query: 324 FVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEP 383
F IGG+ GVILA + + +LH++ ++VAHFH V+ G +F + +G +WF K GY
Sbjct: 351 FTIGGLTGVILANSSLDIVLHDTYYVVAHFHYVLSMGAIFAIFAGFYFWFGKITGYCYNE 410
Query: 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGIL 443
+GK FW IG + F P + LG G RR S F D W +++ G+ + +G++
Sbjct: 411 LYGKIHFWIMFIGVNLTFFPQHFLGLAGFPRRYSDFVD-GFAGWNLVSSLGSTISIVGVI 469
Query: 444 SFIIQLIVSYRKRHTLI---DITGDPWNGRTLEWSTSSPPPVYNFAFIPLIHQSDS 496
F+ + +Y + I + TG W+ +LEW SPP + + +P ++ S S
Sbjct: 470 WFVFIVYDAYVREIKFIGWVENTGASWS--SLEWVQPSPPMSHTYNELPFVYGSYS 523
>sp|P31833|COX1_BRAJA Cytochrome c oxidase subunit 1 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=ctaD PE=2 SV=1
Length = 541
Score = 345 bits (885), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 193/469 (41%), Positives = 281/469 (59%), Gaps = 13/469 (2%)
Query: 32 YNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVM 90
YN T+HG+IMIFF+ MP ++ G N+ VPL IGA D+AFP +NN+SFW+ L++
Sbjct: 78 YNVFVTSHGLIMIFFMVMPAMIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPASFGLLL 137
Query: 91 ISLFI-GEFAS----TGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATI 145
+S F+ GE + GW Y PLS PG VD+ I SL +AG ++L IN I TI
Sbjct: 138 MSTFVEGEPGANGVGAGWTMYVPLSSSGH-PGPAVDFAILSLHLAGASSILGAINFITTI 196
Query: 146 IKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNI 205
MRAPGM L MP+F W+ L T L++ + PVL + + DR GT FF D GG+
Sbjct: 197 FNMRAPGMTLHKMPLFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFGTTFFAPDGGGDP 256
Query: 206 MMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWL 265
+++ +L W +GHPEVYIL+LP FG+ S++VSTFS K +FGY M YA V I + ++VW
Sbjct: 257 VLFQHLFWFFGHPEVYILILPGFGMISQIVSTFSRKPVFGYLGMAYAMVAIGGIGFVVWA 316
Query: 266 HHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFV 325
HH +T+G + A+F TM+I++PTG KIF+W+ TM+ G I F P++W +GF+ F
Sbjct: 317 HHMYTVGMSSATQAYFVAATMVIAVPTGVKIFSWIATMWGGSIEFRAPMIWAVGFIFLFT 376
Query: 326 IGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFW 385
+GG+ GV+LA + +L + ++VAHFH V+ G +F + +G YWFPK GY
Sbjct: 377 VGGVTGVVLANAGVDRVLQETYYVVAHFHYVLSLGAVFAIFAGWYYWFPKMTGYMYNETL 436
Query: 386 GKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSF 445
K FW IG + F P + LG G+ RR + D + W +++ G+ + G+L F
Sbjct: 437 AKAHFWVTFIGVNLVFFPQHFLGLSGMPRRYVDYPD-AFAGWNLVSSVGSYISGFGVLIF 495
Query: 446 IIQLIVSYRKRHTLIDITGDPW--NGRTLEWSTSSPPPVYNFAFIPLIH 492
+ +I ++ K+ + +PW TLEW+ SPPP + F +P +
Sbjct: 496 LYCVIDAFAKK---VPAGDNPWGAGATTLEWTLPSPPPFHQFEVLPRVQ 541
>sp|Q06473|COX1_SYNY3 Cytochrome c oxidase subunit 1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=ctaD PE=3 SV=2
Length = 551
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/489 (38%), Positives = 287/489 (58%), Gaps = 10/489 (2%)
Query: 3 FRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPL 62
F G + A MR + A S ++ PE YNQ+ T HG IMIF +P N+++PL
Sbjct: 43 FIGGSFAEAMRTELATP---SPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFANYLIPL 99
Query: 63 QIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDY 122
+G D+AFP LN ++FW+T G IL++ S F+G GW YPPLS ++ G +
Sbjct: 100 MVGTEDMAFPRLNAVAFWLTPPGGILLISSFFVGA-PQAGWTSYPPLSLLSGK--WGEEL 156
Query: 123 YIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV 182
+I SL + G ++L IN + TI+KMR M L +MP+F W L T+ LI+ + PVL S
Sbjct: 157 WILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASA 216
Query: 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKR 242
L L + D GT FF GG+ ++Y +L W + HP VYI++LP FG+ SEV+ + K
Sbjct: 217 LILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVISEVIPVHARKP 276
Query: 243 LFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFT 302
+FGY ++ Y+++ I+ L IVW HH FT G+ + FF TTM+I++PTG KIF+W T
Sbjct: 277 IFGYRAIAYSSLAISFLGLIVWAHHMFTSGTPGWLRMFFMATTMLIAVPTGIKIFSWCGT 336
Query: 303 MYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVL 362
++ G+I+ +L+ GF+ +F+IGG+ GV++A + +H++ F+V HFH V+ GG
Sbjct: 337 LWGGKIQLNSAMLFAFGFLSSFMIGGLTGVMVASVPFDIHVHDTYFVVGHFHYVLFGGSA 396
Query: 363 FGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDI 422
F L SG+ +WFPK G + G+ F IG + FMP++ LG MG+ RR++ + D+
Sbjct: 397 FALFSGVYHWFPKMTGRMVNEPLGRLHFILTFIGMNLTFMPMHELGLMGMNRRIALY-DV 455
Query: 423 SLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPPPV 482
Q ++ G ++A + F+I + S K +PW TLEW T+SPP +
Sbjct: 456 EFQPLNVLSTIGAYVLAASTIPFVINVFWSLFKGE---KAARNPWRALTLEWQTASPPII 512
Query: 483 YNFAFIPLI 491
NF P++
Sbjct: 513 ENFEEEPVL 521
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.145 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,650,102
Number of Sequences: 539616
Number of extensions: 9348692
Number of successful extensions: 28068
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 27049
Number of HSP's gapped (non-prelim): 353
length of query: 585
length of database: 191,569,459
effective HSP length: 123
effective length of query: 462
effective length of database: 125,196,691
effective search space: 57840871242
effective search space used: 57840871242
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 64 (29.3 bits)