Query psy2379
Match_columns 585
No_of_seqs 289 out of 2074
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:29:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15017 cytochrome o ubiquino 100.0 6E-166 1E-170 1366.1 54.6 584 1-584 68-652 (663)
2 TIGR02843 CyoB cytochrome o ub 100.0 2E-163 4E-168 1349.7 49.1 579 1-579 67-646 (646)
3 TIGR02882 QoxB cytochrome aa3 100.0 1E-159 2E-164 1325.1 53.7 576 1-581 64-642 (643)
4 COG0843 CyoB Heme/copper-type 100.0 1E-148 2E-153 1211.0 47.8 533 1-539 30-565 (566)
5 MTH00223 COX1 cytochrome c oxi 100.0 1E-135 2E-140 1112.4 43.7 485 1-492 23-509 (512)
6 MTH00183 COX1 cytochrome c oxi 100.0 2E-134 5E-139 1105.7 44.5 485 1-492 26-512 (516)
7 MTH00077 COX1 cytochrome c oxi 100.0 2E-134 5E-139 1103.8 44.5 486 2-494 27-514 (514)
8 MTH00103 COX1 cytochrome c oxi 100.0 4E-134 9E-139 1100.4 44.4 484 2-492 27-512 (513)
9 MTH00142 COX1 cytochrome c oxi 100.0 1E-133 3E-138 1096.9 43.6 483 2-491 25-509 (511)
10 MTH00184 COX1 cytochrome c oxi 100.0 1E-133 3E-138 1103.1 41.5 487 2-492 29-517 (519)
11 MTH00116 COX1 cytochrome c oxi 100.0 2E-133 5E-138 1097.4 42.5 485 2-493 27-513 (515)
12 MTH00182 COX1 cytochrome c oxi 100.0 5E-133 1E-137 1098.6 43.6 490 1-494 28-520 (525)
13 MTH00007 COX1 cytochrome c oxi 100.0 8E-133 2E-137 1093.8 44.6 484 2-492 24-509 (511)
14 MTH00037 COX1 cytochrome c oxi 100.0 9E-133 2E-137 1091.9 44.4 485 1-492 26-513 (517)
15 MTH00167 COX1 cytochrome c oxi 100.0 2E-132 4E-137 1090.6 45.0 483 2-491 27-511 (512)
16 MTH00048 COX1 cytochrome c oxi 100.0 1E-132 2E-137 1087.3 42.3 472 2-484 28-503 (511)
17 MTH00153 COX1 cytochrome c oxi 100.0 2E-132 5E-137 1087.5 44.0 484 2-492 25-510 (511)
18 MTH00026 COX1 cytochrome c oxi 100.0 2E-132 4E-137 1093.3 43.0 487 2-492 28-528 (534)
19 MTH00079 COX1 cytochrome c oxi 100.0 2E-129 4E-134 1065.4 44.0 478 2-487 28-507 (508)
20 TIGR02891 CtaD_CoxA cytochrome 100.0 9E-123 2E-127 1022.3 44.4 483 2-491 22-506 (506)
21 cd01662 Ubiquinol_Oxidase_I Ub 100.0 2E-122 4E-127 1017.4 44.9 479 2-485 22-501 (501)
22 cd01663 Cyt_c_Oxidase_I Cytoch 100.0 3E-120 6E-125 994.6 40.3 468 1-475 17-487 (488)
23 cd00919 Heme_Cu_Oxidase_I Heme 100.0 1.5E-97 3E-102 815.7 40.2 447 2-452 16-462 (463)
24 cd01660 ba3-like_Oxidase_I ba3 100.0 1.6E-96 3E-101 806.1 41.8 433 2-453 17-472 (473)
25 PF00115 COX1: Cytochrome C an 100.0 1.8E-95 4E-100 795.7 17.4 427 2-438 16-447 (447)
26 PRK14488 cbb3-type cytochrome 100.0 5.2E-82 1.1E-86 692.0 35.5 424 2-459 24-464 (473)
27 cd01661 cbb3_Oxidase_I Cytochr 100.0 6.6E-81 1.4E-85 685.5 36.6 419 2-452 58-492 (493)
28 TIGR00780 ccoN cytochrome c ox 100.0 9.5E-73 2.1E-77 615.7 35.8 433 2-468 19-470 (474)
29 PRK14485 putative bifunctional 100.0 1.8E-65 4E-70 575.9 37.6 424 2-459 24-464 (712)
30 COG3278 CcoN Cbb3-type cytochr 100.0 1.8E-61 3.9E-66 494.6 22.7 426 2-460 27-471 (482)
31 KOG4769|consensus 100.0 2.4E-39 5.1E-44 295.8 -2.7 180 43-249 1-181 (182)
32 COG3256 NorB Nitric oxide redu 99.3 3.4E-10 7.3E-15 123.8 23.7 395 32-455 295-711 (717)
33 TIGR00780 ccoN cytochrome c ox 98.4 9.5E-05 2.1E-09 82.1 24.9 208 224-456 66-296 (474)
34 PRK14485 putative bifunctional 98.0 0.00086 1.9E-08 77.6 23.5 206 226-455 71-295 (712)
35 cd01661 cbb3_Oxidase_I Cytochr 97.6 0.0013 2.8E-08 73.7 16.3 217 215-456 93-332 (493)
36 PRK14488 cbb3-type cytochrome 97.3 0.0023 5E-08 71.3 12.5 139 3-150 317-463 (473)
37 TIGR02891 CtaD_CoxA cytochrome 97.1 0.024 5.1E-07 63.9 18.5 239 28-313 221-481 (506)
38 cd01663 Cyt_c_Oxidase_I Cytoch 96.9 0.041 9E-07 61.6 17.7 237 28-309 218-473 (488)
39 PF12270 Cyt_c_ox_IV: Cytochro 96.2 0.02 4.2E-07 53.2 7.8 53 516-569 83-135 (137)
40 MTH00153 COX1 cytochrome c oxi 96.2 0.42 9.1E-06 53.9 19.8 238 27-309 224-480 (511)
41 PF00115 COX1: Cytochrome C an 96.0 0.0032 6.9E-08 69.7 2.0 147 311-458 3-158 (447)
42 cd01662 Ubiquinol_Oxidase_I Ub 96.0 0.024 5.3E-07 63.7 8.9 143 313-457 11-166 (501)
43 TIGR02882 QoxB cytochrome aa3 95.9 0.085 1.8E-06 60.8 12.7 144 312-457 53-209 (643)
44 MTH00183 COX1 cytochrome c oxi 95.6 0.68 1.5E-05 52.3 18.4 237 28-309 227-482 (516)
45 MTH00184 COX1 cytochrome c oxi 95.6 0.74 1.6E-05 52.1 18.5 237 28-309 229-484 (519)
46 cd01660 ba3-like_Oxidase_I ba3 95.5 0.045 9.8E-07 61.1 8.7 136 313-454 6-148 (473)
47 MTH00007 COX1 cytochrome c oxi 95.5 0.94 2E-05 51.2 19.0 237 27-309 223-479 (511)
48 cd00919 Heme_Cu_Oxidase_I Heme 95.0 0.2 4.4E-06 55.7 11.8 69 30-100 354-422 (463)
49 MTH00142 COX1 cytochrome c oxi 94.7 1.7 3.7E-05 49.1 18.1 238 27-309 224-480 (511)
50 MTH00223 COX1 cytochrome c oxi 94.3 1.6 3.4E-05 49.4 16.8 242 27-313 223-483 (512)
51 MTH00182 COX1 cytochrome c oxi 94.0 0.8 1.7E-05 51.9 13.7 236 28-308 229-483 (525)
52 COG3278 CcoN Cbb3-type cytochr 94.0 0.11 2.3E-06 55.7 6.2 121 30-150 341-469 (482)
53 MTH00037 COX1 cytochrome c oxi 93.9 2.8 6.1E-05 47.5 17.8 238 27-309 226-482 (517)
54 MTH00116 COX1 cytochrome c oxi 93.0 2.5 5.4E-05 47.9 15.4 184 28-256 227-417 (515)
55 MTH00103 COX1 cytochrome c oxi 93.0 8.1 0.00017 43.8 19.4 237 28-309 227-482 (513)
56 MTH00048 COX1 cytochrome c oxi 91.2 14 0.0003 41.9 18.5 239 27-309 224-481 (511)
57 TIGR02843 CyoB cytochrome o ub 90.3 1.4 2.9E-05 51.1 9.7 144 312-455 56-213 (646)
58 PRK15017 cytochrome o ubiquino 90.3 1.4 3E-05 51.1 9.7 143 312-456 57-215 (663)
59 MTH00079 COX1 cytochrome c oxi 87.7 1.7 3.7E-05 49.1 8.0 142 313-456 17-171 (508)
60 MTH00026 COX1 cytochrome c oxi 85.1 8.2 0.00018 44.0 11.7 111 31-149 371-483 (534)
61 PF05940 NnrS: NnrS protein; 84.9 63 0.0014 35.1 32.1 339 26-457 34-378 (379)
62 MTH00167 COX1 cytochrome c oxi 83.3 3 6.4E-05 47.2 7.2 142 313-456 16-171 (512)
63 MTH00077 COX1 cytochrome c oxi 82.5 4 8.6E-05 46.3 7.8 141 313-455 16-170 (514)
64 PF00510 COX3: Cytochrome c ox 78.0 2.7 5.8E-05 43.2 4.3 50 513-562 1-56 (258)
65 COG0843 CyoB Heme/copper-type 73.6 7.5 0.00016 44.4 6.6 145 311-457 18-176 (566)
66 PF01654 Bac_Ubq_Cox: Bacteria 71.0 40 0.00086 37.6 11.4 51 284-335 17-68 (436)
67 MTH00052 COX3 cytochrome c oxi 68.6 9.3 0.0002 39.5 5.6 48 514-561 8-59 (262)
68 MTH00024 COX3 cytochrome c oxi 67.4 13 0.00028 38.5 6.3 48 514-561 7-58 (261)
69 MTH00141 COX3 cytochrome c oxi 65.8 13 0.00029 38.2 6.1 49 514-562 5-57 (259)
70 MTH00083 COX3 cytochrome c oxi 64.2 17 0.00037 37.4 6.5 50 512-561 2-55 (256)
71 MTH00155 COX3 cytochrome c oxi 62.4 16 0.00036 37.6 6.0 49 514-562 5-57 (255)
72 MTH00039 COX3 cytochrome c oxi 61.6 18 0.00038 37.5 6.0 49 513-561 5-57 (260)
73 PF11070 DUF2871: Protein of u 60.4 5 0.00011 37.3 1.6 98 344-451 33-130 (132)
74 MTH00099 COX3 cytochrome c oxi 56.3 29 0.00063 35.9 6.6 48 514-561 7-58 (261)
75 MTH00075 COX3 cytochrome c oxi 55.2 35 0.00076 35.3 6.9 48 514-561 7-58 (261)
76 MTH00009 COX3 cytochrome c oxi 55.2 27 0.00059 36.1 6.1 48 514-561 5-56 (259)
77 MTH00118 COX3 cytochrome c oxi 54.9 32 0.00069 35.6 6.6 48 514-561 7-58 (261)
78 MTH00189 COX3 cytochrome c oxi 54.3 26 0.00057 36.2 5.8 48 514-561 6-57 (260)
79 MTH00130 COX3 cytochrome c oxi 54.2 25 0.00055 36.3 5.7 49 514-562 7-59 (261)
80 MTH00219 COX3 cytochrome c oxi 52.0 30 0.00066 35.8 5.9 48 514-561 8-59 (262)
81 MTH00028 COX3 cytochrome c oxi 50.6 42 0.00091 35.5 6.7 49 513-561 6-58 (297)
82 PLN02194 cytochrome-c oxidase 48.2 42 0.00092 34.8 6.2 48 514-561 8-61 (265)
83 PF05656 DUF805: Protein of un 31.0 1.7E+02 0.0037 25.8 6.7 38 412-449 66-103 (120)
84 PF13301 DUF4079: Protein of u 27.1 3.4E+02 0.0073 26.5 8.3 78 319-409 92-169 (175)
85 COG5346 Predicted membrane pro 25.1 2E+02 0.0043 26.5 5.8 44 523-566 86-133 (136)
86 PF04142 Nuc_sug_transp: Nucle 24.4 3.5E+02 0.0075 27.6 8.3 43 222-265 187-230 (244)
87 COG3256 NorB Nitric oxide redu 21.1 4E+02 0.0086 31.1 8.4 135 266-401 192-354 (717)
No 1
>PRK15017 cytochrome o ubiquinol oxidase subunit I; Provisional
Probab=100.00 E-value=5.5e-166 Score=1366.09 Aligned_cols=584 Identities=65% Similarity=1.227 Sum_probs=566.0
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
++++|+++|++||+||+.|..+.++++++++|||++|+||++|+|++++|+++|++||++|+|+|+||++|||+|++|||
T Consensus 68 ~~~~Gg~~alliR~qlal~~~~~~~~l~~~~Yn~~~T~HG~iMiFf~~mP~~~Gf~N~lvPl~iGarDmafPrLN~lsfW 147 (663)
T PRK15017 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFW 147 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhhHH
Confidence 46899999999999998553222467899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
++..|.+++++|++.|+++++|||.|||||+..++|+.++|+|++|+++.++||+++++|+++|+.|||+|||+++|||+
T Consensus 148 l~~~g~~l~~~s~~~g~~~~~GWT~YpPLs~~~~spg~~vd~~i~~l~l~gisSil~~iNfi~Ti~~mRapGmt~~rmPl 227 (663)
T PRK15017 148 FTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPV 227 (663)
T ss_pred HHHHHHHHHHHHHhhhccccCCCccCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCeecH
Confidence 99999999999999999999999999999987889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
|+|+.++|++++++++|+++++++|+++||++|++||+|..||||++||||||+||||||||+++|++|++||++|+++|
T Consensus 228 f~W~~l~tsil~l~a~PvL~~a~~mLl~Dr~~gt~FF~~~~GGdplL~qhLFWffGHPeVYIliLPafGiis~ii~~~s~ 307 (663)
T PRK15017 228 FTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307 (663)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCceecCCCCCCChHHHhHHHhhccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHH
Q psy2379 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGF 320 (585)
Q Consensus 241 kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~ 320 (585)
||+|||+.+++|+.+++++|+.||+||||++|++.+.|.+|+++||+|||||++|+|||++|+++||+|+++|++|+++|
T Consensus 308 k~lfgy~~mv~A~~~I~~lsf~VW~HHmFt~G~~~~~~~~F~~~Tm~IAvPTgvkiF~Wl~Tl~~g~i~~~~pml~~lgf 387 (663)
T PRK15017 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGF 387 (663)
T ss_pred CcccccHHHHHHHHHHHHHhceechhheeeccCchHHHHHHHHHHHHHHhhhHHHHHHHHHHccCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHH
Q psy2379 321 MITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVA 400 (585)
Q Consensus 321 i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~ 400 (585)
+++|++||+||+++|++++|.++|||||||||||+++++|++|++++|+|||+||++||++|||++|+|||++++|+|++
T Consensus 388 i~~F~iGGlTGV~la~~~~D~~lHdTyfVVaHFHyvl~~G~vf~if~g~~yWfPk~tG~~l~e~lgk~~Fwl~fiG~nlt 467 (663)
T PRK15017 388 IVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVA 467 (663)
T ss_pred HHHHHHHhhchHHhhhHHHHHHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCCC
Q psy2379 401 FMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480 (585)
Q Consensus 401 f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sPP 480 (585)
|+|||++|++|||||+++|++++|+++|.++++||+++.+|+++|++|+++|+++|++.++.++|||+++||||+++|||
T Consensus 468 F~pmh~lGl~GMPRR~~~y~~~~~~~~n~issiGa~i~~~~~l~fi~~~~~s~~~~~~~~~~~~~pw~~~tlEW~~~sPp 547 (663)
T PRK15017 468 FMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAALIALGILCQVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547 (663)
T ss_pred HHHHHHHhcCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCChhhCcCCCC
Confidence 99999999999999999998778999999999999999999999999999999998877777889999999999999999
Q ss_pred CCCCCCcCcccccCChhhhhccCCCCCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIVIY 559 (585)
Q Consensus 481 p~~nf~~~P~V~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 559 (585)
|+|||+++|+|++|||+|++|++|+.+. |+++++||||+||+.|++++....+++|+++||+||++++++++++++++.
T Consensus 548 p~~nf~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (663)
T PRK15017 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKQPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIV 627 (663)
T ss_pred cccCCccCcCcCCchhhhcccccccccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888776554 678999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccChhhHHhhHHhhhc
Q psy2379 560 NTFNYKRNYYISSEEITCIEKKRIR 584 (585)
Q Consensus 560 ~~~~~~~~~~i~~~~v~~~e~~~~~ 584 (585)
|++++|+|||||+|||||+|+++.+
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (663)
T PRK15017 628 KSFDEDVDYYVPVAEIEKLENQHFD 652 (663)
T ss_pred hhhcCCCCeEEcHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 2
>TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=100.00 E-value=1.8e-163 Score=1349.74 Aligned_cols=579 Identities=69% Similarity=1.268 Sum_probs=561.4
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
++++|+++|++||+||+.|+.+.++++++++|||++|+||++|+|+++||+++|++||++|+|+|+||++|||+|++|||
T Consensus 67 ~~l~Gg~~alliR~qL~~p~~g~~~~l~~~~Yn~i~T~HG~iMiFf~~mP~~~GfgN~lvPl~iGarDmaFPRLN~lSfW 146 (646)
T TIGR02843 67 MLLRGFADAIMMRTQQALASGGSAGYLPPHHYDQIFTAHGVIMIFFVAMPFVFGLMNLVVPLQIGARDVAFPFLNSLSFW 146 (646)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhHHHH
Confidence 36889999999999999886433467899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
++..|.++++.|++.|+++++|||.|||||+..++|+.++|+|++|+++.++||+++++||++|+.|+|+|||+++|||+
T Consensus 147 l~~~g~~l~~~S~~~g~~~~~GWT~YpPLs~~~~spg~~vd~~i~gl~l~gisSilgaiNfi~Ti~~mRapGm~~~rmPl 226 (646)
T TIGR02843 147 LTVVGAILVNVSLGVGEFAQTGWLAYPPLSELQYSPGVGVDYYIWALQISGIGTLLTGINFFVTIIKMRAPGMTLMKMPV 226 (646)
T ss_pred HHHHHHHHHHHHHHhcccccCCCeeCCCCcCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCH
Confidence 99999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
|+|+.++|++++++++|+++++++|+++||++|++||+|.+||||++||||||+||||||||+++|++|++||++|+++|
T Consensus 227 f~Ws~l~Tsil~l~a~PvL~~a~~ml~~dr~~gt~FF~~~~GGdplL~qhLFWffGHPeVYIliLPafGiis~ii~~~s~ 306 (646)
T TIGR02843 227 FTWTSLCSNVLIIASFPILTVTLALLTLDRYLGMHFFTNEAGGNPMMYVNLIWAWGHPEVYILILPAFGIFSEVVATFSR 306 (646)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCcccCcccCCChhhhheeeEEecCcchheecccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHH
Q psy2379 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGF 320 (585)
Q Consensus 241 kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~ 320 (585)
||+|||+.+++|+.+++++|+.||+||||++|++.+.+++|+++|++||+||++|+|||++|+++||+|+++|++|+++|
T Consensus 307 k~lfgy~~mv~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~~~Tm~IaiPTgvkvF~Wl~Tl~~g~i~~~~pml~~lgf 386 (646)
T TIGR02843 307 KRLFGYTSMVWATIAITVLSFIVWLHHFFTMGAGANVNAFFGIATMIIAIPTGVKIFNWLFTMYKGRIRFETPMLWTIGF 386 (646)
T ss_pred CcccccHHHHHHHHHHHHHheeechhhheeccCchHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHH
Q psy2379 321 MITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVA 400 (585)
Q Consensus 321 i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~ 400 (585)
+++|++||+||+++|+.++|.++||||||||||||++++|++|+++||+|||+||++||++|||++|+|||++++|+|++
T Consensus 387 i~~F~iGG~TGV~la~~~~D~~lHdTyfVVaHFHyvl~~g~vf~~~ag~~yW~Pk~tGr~l~e~lgk~~fwl~fiG~nlt 466 (646)
T TIGR02843 387 MVTFSIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGCFAGLTYWFPKAFGFKLNEKLGKRSFWCWFIGFYLA 466 (646)
T ss_pred HHHHHHHhccchhhhhHHHHHHHhhhHHHhhhhHHHhhhHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCCC
Q psy2379 401 FMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480 (585)
Q Consensus 401 f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sPP 480 (585)
|+|||++|++|||||++||++++|+++|.++++||+++.+|+++|++|+++|+++||+.++..+|||+++||||+++|||
T Consensus 467 F~pmh~lGl~GmPRR~~~Y~~~~~~~~n~issiGa~i~~~~~l~f~~~~~~s~~~~~~~~~~~~~pw~~~tlEW~~~sP~ 546 (646)
T TIGR02843 467 FMPLYILGFMGMTRRLNHYDNPEWHPMLIIAAFGAFLIACGILCQIIQIFVSIRDRDQNRDTTGDPWGGRTLEWSTSSPP 546 (646)
T ss_pred HHHHHHHHcCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCCCCCcccccCCCC
Confidence 99999999999999999998878999999999999999999999999999999988766666789999999999999999
Q ss_pred CCCCCCcCcccccCChhhhhccCCCCCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIVIY 559 (585)
Q Consensus 481 p~~nf~~~P~V~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 559 (585)
|+|||+++|+|++|||+|++|++++.+. +++++++|||+||+.|++++....+++|+++|++||++++++++++++.+.
T Consensus 547 p~~nf~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (646)
T TIGR02843 547 PFYNFAVIPKVQDRDAFWDMKKKGVAYPRPAKYEDIHMPKNTAAGFIIGAFSLVFGFALVWHIWWLAIIGFVGIIATLIV 626 (646)
T ss_pred cccCCccCcCcccchhhhcccccccccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887664433 678899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccChhhHHhhH
Q psy2379 560 NTFNYKRNYYISSEEITCIE 579 (585)
Q Consensus 560 ~~~~~~~~~~i~~~~v~~~e 579 (585)
|++++|+|||||+|||||+|
T Consensus 627 ~~~~~~~~~~~~~~~~~~~e 646 (646)
T TIGR02843 627 RSFDDDVDYYVPAEEVKKIE 646 (646)
T ss_pred HHhcCCCCEEEcHHHHhhcC
Confidence 99999999999999999998
No 3
>TIGR02882 QoxB cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=100.00 E-value=1.1e-159 Score=1325.06 Aligned_cols=576 Identities=53% Similarity=1.003 Sum_probs=558.3
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
++++|+++|++||+||+.|+. ++.++++|||++|+||++|+|++++|+++|++||++|+|+|+||++|||+|++|||
T Consensus 64 ~~~~Gg~~alliR~qL~~p~~---~~~~~~~Yn~~~T~HG~~MiF~~~mp~~~Gf~nylvPl~iGardmafPrLn~~sfW 140 (643)
T TIGR02882 64 MLFRGGIDALLMRAQLTVPDN---KFLDAQHYNEIFTTHGVIMIIFMAMPFIIGLMNIVVPLQIGARDVAFPVLNALSFW 140 (643)
T ss_pred HHHHHHHHHHHHHHHHhCCcc---cCCCccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhHHHHHHH
Confidence 468999999999999999974 56789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+++.|.+++.+|++.|+++++|||.|||||+.+++|+.++|+|+++++++++||+++++|+++||.|+|+|||+++|||+
T Consensus 141 l~~~g~~l~~~s~~~~~~~~~GWT~YpPLs~~~~~~~~g~d~~i~~l~l~gvssil~~iNfi~Ti~~~R~pgm~~~~mPl 220 (643)
T TIGR02882 141 LFFAGAMLFNISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPM 220 (643)
T ss_pred HHHHHHHHHHHHHhcccCcccCCccCCCccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhCcH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
++|+.++|++++++++|+++++++|+++||++|++||++..||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 221 f~W~~l~t~il~~~a~P~L~~a~~ll~~dr~~~t~Ff~~~~GGdp~L~qhLFWffGHPeVYiliLPa~Giis~iip~~s~ 300 (643)
T TIGR02882 221 FTWTTLITTLIIIFAFPVLTVALALMTTDRIFDTAFFTVAHGGMPMLWANLFWIWGHPEVYIVILPAFGIYSEIISTFAQ 300 (643)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCCchhHHhhHHHhcCCCcchhhhccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHH
Q psy2379 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGF 320 (585)
Q Consensus 241 kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~ 320 (585)
||+|||+.+++|+++++++|+.||+||||++|++++.|++|+++||+|+|||++|+|||++|+++||+|+++|++|+++|
T Consensus 301 kplfgy~~~v~a~~~i~~ls~~VW~HHmft~G~~~~~~~~f~~~Tm~IaIPtgvkvFnWl~Tl~gg~i~~~~pmlf~l~f 380 (643)
T TIGR02882 301 KRLFGYKSMVWSTVGIAFLSFLVWVHHFFTMGNGALINSFFSITTMAIAIPTGVKIFNWLLTLYKGKIRFTTPMLFSLAF 380 (643)
T ss_pred CcccccHHHHHHHHHHHHHHhhhchhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHH
Q psy2379 321 MITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVA 400 (585)
Q Consensus 321 i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~ 400 (585)
+++|++||+||+++|++++|.++|||||||||||+++++|++|+++|++|||+||++||++||||+|+|||++++|++++
T Consensus 381 i~~F~iGGltGv~la~~~~d~~~HdT~fVVaHFH~vl~gg~vf~~~ag~yyw~Pk~~Gr~l~~~l~k~~Fwl~~iG~~l~ 460 (643)
T TIGR02882 381 IPNFLIGGVTGVMLAMASADYQYHNTYFLVAHFHYVLITGVVFACLAGLIYWYPKMFGYKLNERLGKWCFWFFMIGFNVC 460 (643)
T ss_pred HHHHHHhhcCcchhcchhhHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcccccccccch-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 401 FMPLYILGFMGVTRRMSHFEDI-SLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 401 f~pm~~~Gl~GmpRR~~~y~~~-~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
|+|||++|++|||||+++|++. +|++||.++++|++++.+|+++|++|+++|+++|++ +..+|||+++||||+++||
T Consensus 461 F~pmh~lGl~GmpRR~~~y~~~~~~~~~n~issiGa~i~~~g~llf~~nl~~S~~~~~r--~~~~~pw~~~tLEW~~~sP 538 (643)
T TIGR02882 461 FFPMYILGLDGMPRRMYTYSPSDGWFPLNLISTIGALLMAIGFIFLVYNIYYSHRKSPR--EATGDPWNGRTLEWATASP 538 (643)
T ss_pred HHHHHHhhhchhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--CccCCCCCCCChhhcccCC
Confidence 9999999999999999999863 699999999999999999999999999999988753 2356999999999999999
Q ss_pred CCCCCCCcCcccccCChhhhhccCCC-CCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 480 PPVYNFAFIPLIHQSDSWWYMKKNNF-KFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIV 557 (585)
Q Consensus 480 Pp~~nf~~~P~V~~~~~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 557 (585)
||+|||+++|+|++|||+|++|+++. .+. +++++++|+|+||.+|++++.+..+++++++|++||++++++++++++.
T Consensus 539 pp~~nF~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (643)
T TIGR02882 539 PPKYNFAVTPDVNDYDAFWDMKKHGYRHYLDNENYKDIHMPNNSGVGFWIGIFFFIGGFFLVFETVAPAIVGAFGIFGTL 618 (643)
T ss_pred CCccCCccccCcCCchhhhccccccccccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654 233 6789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccChhhHHhhHHh
Q psy2379 558 IYNTFNYKRNYYISSEEITCIEKK 581 (585)
Q Consensus 558 ~~~~~~~~~~~~i~~~~v~~~e~~ 581 (585)
+.|++++|+||+||+|||||+|++
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~ 642 (643)
T TIGR02882 619 IYRSFEIDDGYHIPAAEIAETEAR 642 (643)
T ss_pred HHHHhcCCCCEEEcHHHHHHHHhc
Confidence 999999999999999999999986
No 4
>COG0843 CyoB Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]
Probab=100.00 E-value=1.1e-148 Score=1211.02 Aligned_cols=533 Identities=53% Similarity=0.978 Sum_probs=515.5
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
++++|+++|++||+||+.|++ .+++++++|||++|+||++|+|++++|++.|++||++|+|+||||++|||+|++|||
T Consensus 30 ~~l~gg~~a~~mR~~la~p~~--~~~l~~~~Yn~~~T~HGviMif~~~~p~i~Gf~n~~vpl~iGa~d~afPrlN~isFW 107 (566)
T COG0843 30 FLLVGGALALLMRLELATPSG--SQFLDPQLYNQILTLHGVIMIFFFAMPAIGGFANYLVPLMIGARDVAFPRLNAISFW 107 (566)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Confidence 478999999999999999952 489999999999999999999999999977899999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhh-cccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 81 MTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 81 l~~~g~~l~~~s~~~-G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
+++.|.++++.|++. |+++++|||.|||||.++++ +.++|++++|+++.++||+++++||++|++|+|+|||+++|||
T Consensus 108 l~~~g~~ll~~s~~v~gg~~~~GWt~YpPLs~~~~s-g~g~dl~~~~l~l~gi~s~l~~infivTi~~mRapgm~~~kmP 186 (566)
T COG0843 108 LLVVGAILLVTSFFVPGGAADTGWTAYPPLSAISYS-GPGVDLFILGLHLLGIGSLLGAINFIVTILNMRAPGMTMMKMP 186 (566)
T ss_pred HHHHHHHHHHHHHhccCCCCCcceEecCCcccCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCc
Confidence 999999999999999 88888999999999998899 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+|+|++++|++++++++|+++++++++++||++|++||+++.||||++||||||+||||||||+++|++|++||++|+++
T Consensus 187 lf~w~~l~t~~L~lla~P~L~~~~~~llldr~~gt~fF~~~~gG~p~L~qhLFWffGHPeVYi~iLPafGi~s~iip~~a 266 (566)
T COG0843 187 LFTWSILITAILILLAFPVLAAALTMLLLDRNFGTSFFTPAGGGDPLLYQHLFWFFGHPEVYILILPAFGIVSEIIPTFA 266 (566)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcccccCCCCCHHHHHHHHHHcCCceeehhHHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|||+|||+.+++|+++++++|+.||.||||++|++.+.|.+|+++||+||+|||+|+|||++|+|+||+|+++||+|+++
T Consensus 267 ~k~lFgy~~m~~a~~~i~ilSf~Vw~HHmft~G~~~~~~~~f~~~Tm~IaiPTgikiFnW~~t~~~G~i~~~~pml~~~~ 346 (566)
T COG0843 267 RKPLFGYTSMVYAFVAIGILSFIVWAHHMFTTGLPADLRAFFSITTMIIAIPTGIKIFNWLATLWGGRIRFKTPMLFAIG 346 (566)
T ss_pred CCCcchHHHHHHHHHHHHHHHhHHhHhhccccCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCceeccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++..|++||+||+++|+.++|.++|||||||||||+++.++++|+++|++|||+||++||++||+++|+|||++++|+++
T Consensus 347 fi~~F~iGGvTGv~la~~~~d~~vhnTy~VVgHFH~vl~~~~vf~~~ag~~~w~pk~tGr~~~e~~gk~~f~~~~iG~~l 426 (566)
T COG0843 347 FIVTFVIGGVTGVLLASIPLDFVVHNTYFVVGHFHYVLGGGVVFGLFAGIYYWFPKMTGRMLNERLGKLHFWLWFIGFNL 426 (566)
T ss_pred HHHHHhhcceeEEEcccccccceecCceEEeeehhhhHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCccccccccc-chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFE-DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSS 478 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~-~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~s 478 (585)
+|+|||++|++|||||+++|+ +++|+++|.++++||+++++|++++++|++.|+++|| +++++|||+++||||+++|
T Consensus 427 ~f~pm~~lGl~GmpRR~~~y~~~~~~~~~n~i~tvGa~il~~g~~~~~~~~v~s~~~g~--~~~~~~pw~~~tlew~tss 504 (566)
T COG0843 427 TFFPMHVLGLMGMPRRYATYPGVPGFTPLNVIATVGAFILGLGVLLFLLNLVVSLRKGK--RDATGDPWGARTLEWATSS 504 (566)
T ss_pred HHHHHHHHhhCCCchhhhhcCCCcchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccc--cccCCCCCCCccccccCCC
Confidence 999999999999999999998 4799999999999999999999999999999999987 5678899999999999999
Q ss_pred CCCCCCCCcCc-ccccCChhhhhccCCCCCCCCCcccccCCCCCcchHHHHHHHHHHHHHHH
Q psy2379 479 PPPVYNFAFIP-LIHQSDSWWYMKKNNFKFPKDKFQDILMPKNTNIGILISIFSLIMGFALV 539 (585)
Q Consensus 479 PPp~~nf~~~P-~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 539 (585)
|||.|||+++| +++++|+.||.|+.+..+..++. ++|+|+|+..++..+.+...++++++
T Consensus 505 ppp~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~ 565 (566)
T COG0843 505 PPPFYNFAELPYKVRASDAVYDNKSPGLYERYPSG-DIHMPYNTGEPFMISKFSLFFGFGLI 565 (566)
T ss_pred CCCcccccCCCceeeechhhhhccCCccceecccc-ccccCCCCCcchHHHHHHHhhhcccc
Confidence 99999999999 99999999999988755442222 89999999999999999999888865
No 5
>MTH00223 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=1.1e-135 Score=1112.40 Aligned_cols=485 Identities=38% Similarity=0.763 Sum_probs=469.4
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sf 79 (585)
++++|+++|++||+||+.|+. .+.++|.|||++|+||++|+|++++|+.+ |++||++|+|+|+||++|||+|++||
T Consensus 23 ~~~~g~~la~~iR~eL~~pg~---~~~~~~~Yn~~~T~HG~~Mif~~~~p~~~~gfgn~l~pl~lGa~dmafPrln~~sf 99 (512)
T MTH00223 23 SGLVGTSLSLLIRAELGQPGA---LLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMSF 99 (512)
T ss_pred HHHHHHHHHHHHHHHHhCccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHH
Confidence 368999999999999999974 67789999999999999999999999865 59999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 80 WMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
|++..|.+++..|++.++.+++|||.|||||...+.++.++|++++++++.++||+++++|+++|+.|+|+|||+++|+|
T Consensus 100 wl~~~g~~l~~~s~~~~g~~~~gWT~YpPLs~~~~~~g~~~d~~~~~l~~~gvss~l~~in~i~Ti~~~R~~gm~~~~~P 179 (512)
T MTH00223 100 WLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLERLP 179 (512)
T ss_pred HHHhHHHHHHHHHhhccCCCCCCceECCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHhH
Confidence 99999999999998886678999999999996556678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+++|+.++|++++++++|+++++++|+++||++|++||+|..||||++||||||+|||||||++++|++|++||++|+++
T Consensus 180 lf~w~~~~ts~l~l~~~Pvl~~~~~mll~dr~~gt~ff~~~~GgdplL~qhLFWffGHPeVYi~ilPa~g~~~~i~~~~s 259 (512)
T MTH00223 180 LFVWSVKVTAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVSHYS 259 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCeehhhhhHHHccchhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH
Q psy2379 240 SK-RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI 318 (585)
Q Consensus 240 ~k-plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l 318 (585)
|| |+|||+.+++++.+++++|+.||+||||++|++.+.|.+++++|++|++||++|+|||++|+|+||+|+++|++|++
T Consensus 260 ~~~~~fg~~~~v~~~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~iaiPs~vkvf~w~atl~~g~~~~~~p~~~~l 339 (512)
T MTH00223 260 SKKEVFGTLGMIYAMLSIGVLGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIYGSKIKYEAPMLWAL 339 (512)
T ss_pred CCcchhHHHHHHHHHHHHHhheeEecccceeccCcchhHHHHHHHHHHHHHcchhHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+|+++|++||+||+++|+.++|.++|||||||||||+++.+|++++.++|+|||+||++||++|||++|+|||++++|++
T Consensus 340 ~fi~~F~~GG~tGv~~a~~~~d~~~HdT~~VvaHFH~vl~~g~v~~~f~g~~yw~P~~tGr~~~~~l~~~~f~~~~iG~~ 419 (512)
T MTH00223 340 GFIFLFTVGGLTGIILSNSSLDIMLHDTYYVVAHFHYVLSMGAVFALFAGFNHWFPLFTGVTLHRRWAKAHFFLMFLGVN 419 (512)
T ss_pred HHHHHHHhcccchhhccchHHHhhhhccchhhhhhHHHhhhhHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCC
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSS 478 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~s 478 (585)
++|+|||++|++|||||++||+| +|+++|+++++||+++.+|+++|++|+++|+++||+. .+|||+++|+||+++|
T Consensus 420 ~~f~pmh~lGl~GmPRR~~~Yp~-~~~~~n~issiGa~i~~~~~llfl~~l~~Sl~~gr~a---~~~pw~s~tLEW~~~s 495 (512)
T MTH00223 420 LTFFPQHFLGLAGMPRRYSDYPD-CYTKWNQVSSFGSMISFVSVLFFMFIVWEAFVSQRSV---VWSGHLSTSLEWDNLL 495 (512)
T ss_pred HHHhHhhhhccCcCCceecCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cCCCCCCCCcccccCC
Confidence 99999999999999999999976 7999999999999999999999999999999988765 4599999999999999
Q ss_pred CCCCCCCCcCcccc
Q psy2379 479 PPPVYNFAFIPLIH 492 (585)
Q Consensus 479 PPp~~nf~~~P~V~ 492 (585)
|||+|||+|+|.|.
T Consensus 496 Ppp~hnF~e~P~v~ 509 (512)
T MTH00223 496 PADFHNNSETGALV 509 (512)
T ss_pred CCcccCCCCCeeee
Confidence 99999999999875
No 6
>MTH00183 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=2.3e-134 Score=1105.66 Aligned_cols=485 Identities=37% Similarity=0.769 Sum_probs=468.9
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sf 79 (585)
++++|+++|+++|+||..|+. .+.++++|||++|+||++|+|++++|+++| ++||++|+|+|+||++|||+|++||
T Consensus 26 ~~~~g~~~a~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~iMiff~~~P~~~ggfgn~lvPl~lGa~dmafPrlN~~sf 102 (516)
T MTH00183 26 AGMVGTALSLLIRAELSQPGA---LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF 102 (516)
T ss_pred HHHHHHHHHHHHHHHHhCCcc---ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhH
Confidence 357899999999999999963 567889999999999999999999998765 9999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 80 WMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
|++..|.+++..|++.++++++|||.|||||.+.++++.++|++++|+++.++||+++++|+++|+.|+|+|||+++|||
T Consensus 103 Wl~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~vd~~~~~l~l~giss~l~~iNfi~Ti~~~Ra~gm~~~~~P 182 (516)
T MTH00183 103 WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTP 182 (516)
T ss_pred HHHhHHHHHHHHHHhccCCCCCCccCCcCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCeec
Confidence 99999999999999997778999999999997666778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+++|+.++|+++.++++|++++++.|++.||+++++||+|..||||++||||||+|||||||++++|++|++||++|+++
T Consensus 183 lf~w~~~~t~il~l~a~Pvl~~a~~mll~dr~~~t~ff~~~~ggdp~l~q~LFWffGHPeVYi~ilPa~g~~~~il~~~~ 262 (516)
T MTH00183 183 LFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYS 262 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCCcchhhhhHHHhccchhhhhhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH
Q psy2379 240 S-KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI 318 (585)
Q Consensus 240 ~-kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l 318 (585)
| ||+|||+.+++|+.+++++|+.||+||||++|++.+.|.+|+++|++|++||++|+|||++|+++||+++++|++|++
T Consensus 263 ~~~~~fg~~~~v~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~iaiPt~vkvf~w~~tl~~g~i~~~~p~~~~~ 342 (516)
T MTH00183 263 GKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWAL 342 (516)
T ss_pred CCCcchhhHHHHHHHHHHHHHHhhcchhheecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Confidence 6 699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+++++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++++|||+||++||+++|+++|+|||++++|++
T Consensus 343 ~fi~~F~~GG~tGv~la~~~~d~~~HnT~~VvaHFH~~l~~g~v~~~~~~~yyw~P~~~Gr~~~~~l~~~~fw~~~iG~~ 422 (516)
T MTH00183 343 GFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLFSGYTLHSTWTKIHFGVMFVGVN 422 (516)
T ss_pred HHHHHHHhcccchhhhcchhhhhhhcccHHHhhhHHHHHhhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCC
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSS 478 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~s 478 (585)
++|+|||++|++|||||++||+| ++++||.++++|+++..+|+++|++++++|++++|+. ..|||+++|+||++++
T Consensus 423 ~~f~pm~~~Gl~GmPRR~~~y~d-~~~~wn~issIGs~i~~~~vL~Fi~~lw~s~~~~r~a---~~~pw~~~sLEW~~~s 498 (516)
T MTH00183 423 LTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAKREV---LSVELTSTNVEWLHGC 498 (516)
T ss_pred HHHHHHHhhccccccchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cCCCCCCCCeecCCCC
Confidence 99999999999999999999977 7999999999999999999999999999999887654 3599999999999999
Q ss_pred CCCCCCCCcCcccc
Q psy2379 479 PPPVYNFAFIPLIH 492 (585)
Q Consensus 479 PPp~~nf~~~P~V~ 492 (585)
|||+|||+|+|.+.
T Consensus 499 PPp~hnf~e~p~v~ 512 (516)
T MTH00183 499 PPPYHTFEEPAFVQ 512 (516)
T ss_pred CCCccCCCCCceec
Confidence 99999999999984
No 7
>MTH00077 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=2.4e-134 Score=1103.84 Aligned_cols=486 Identities=37% Similarity=0.758 Sum_probs=468.2
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|+||..|+. .+.++|+|||++|+||++|+|++++|+.+| ++||++|+|+|+||++|||+|++|||
T Consensus 27 ~~~g~~~a~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~~Mif~~~mp~~~ggfgn~lvPl~lGa~dmafPrlN~~sfW 103 (514)
T MTH00077 27 GMVGTALSLLIRAELSQPGT---LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 (514)
T ss_pred HHHHHHHHHHHHcccCCCcc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHH
Confidence 57899999999999999963 567889999999999999999999998765 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|++.++++++|||.|||||...++++.++|++++|+++.++||+++++|+++|+.|+|+|||+++|||+
T Consensus 104 l~~~~~~ll~~s~~~~~g~~~gWT~YpPLs~~~~~~g~~~d~~~~~l~l~gisSil~~iNfi~Ti~~~R~~g~~~~~~Pl 183 (514)
T MTH00077 104 LLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMSQYQTPL 183 (514)
T ss_pred HHhHHHHHHHHHHhccCCcCCCCeeCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCH
Confidence 99999999999999977789999999999976677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
++|+.++|+++.++++|+++++++|+++||++|++||||.+||||++||||||+|||||||++++|++|++||++|++++
T Consensus 184 f~w~~~~t~~l~l~a~Pvl~~~~~mll~Dr~~~t~ff~p~~ggdplL~qhLFWffGHPeVYi~ilPa~g~vs~ii~~~~~ 263 (514)
T MTH00077 184 FVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGMISHIVTYYSA 263 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecccCCCCchhhhhHHHHhccchhheeccChHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 241 -KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 241 -kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
||+|||+.+++|+++++++|+.||+||||++|.+.+.|.+|+.+|++||+||++|+|||++|+++||+|+++|++|+++
T Consensus 264 ~~~~fg~~~~~~a~~~i~~l~~~Vw~HHmf~~g~~~~~~~~f~~~T~~iavPt~vkvf~w~~Tl~~g~~~~~~p~~~~~~ 343 (514)
T MTH00077 264 KKEPFGYMGMVWAMMSIGLLGFIVWAHHMFTVDLNVDTRAYFTSATMIIAIPTGVKVFSWLATMHGGAIKWDAAMLWALG 343 (514)
T ss_pred CCcchhhHHHHHHHHHHHHHhceecccceeecCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++++|||+||++||++||+++|+|||++++|+++
T Consensus 344 fi~~F~~GG~tGv~la~~~~d~~~HdT~~VvaHFH~vl~~g~~~~~~~~~y~~~P~~~Gr~~~~~l~~~~f~l~~iG~~~ 423 (514)
T MTH00077 344 FIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLHSTWSKIHFGVMFIGVNL 423 (514)
T ss_pred HHHHHhccCCchheecchhhhhhhccchhHhhhhhHHhhhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| ++++||.++++|++++.+|+++|++++++|++++|+. .+|+|+++|+||++++|
T Consensus 424 ~f~pmh~~Gl~GmPRR~~~Y~~-~~~~~n~issiGa~I~~lg~l~fi~~l~~s~~~~r~~---~~~~w~~~sLEW~~~sP 499 (514)
T MTH00077 424 TFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLVAVIMMMFIIWEAFSSKREV---LTTELTSTNIEWLHGCP 499 (514)
T ss_pred HHHHHHhcccCccCcccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---CCCCCCCCCcccCCCCC
Confidence 9999999999999999999976 7999999999999999999999999999998776644 34678899999999999
Q ss_pred CCCCCCCcCcccccC
Q psy2379 480 PPVYNFAFIPLIHQS 494 (585)
Q Consensus 480 Pp~~nf~~~P~V~~~ 494 (585)
||+|||+|+|.+..|
T Consensus 500 Pp~hnf~e~p~~~~~ 514 (514)
T MTH00077 500 PPYHTFEEPSFVQTR 514 (514)
T ss_pred CCccCCCCccccccC
Confidence 999999999998654
No 8
>MTH00103 COX1 cytochrome c oxidase subunit I; Validated
Probab=100.00 E-value=4.1e-134 Score=1100.42 Aligned_cols=484 Identities=37% Similarity=0.760 Sum_probs=469.1
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. .+.+++.|||++|+||++|+|++++|+++| ++||++|+|+|+||++|||+|++|||
T Consensus 27 ~~~G~~~s~liR~eL~~pg~---~~~~~~~Yn~~~T~Hg~~Miff~vmP~~~ggfgN~l~Pl~lGa~dmafPRlN~lsfW 103 (513)
T MTH00103 27 GMVGTALSLLIRAELGQPGT---LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 (513)
T ss_pred HHHHHHHHHHHHHHHhCCcc---ccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccchhhhHHH
Confidence 57899999999999999964 566788999999999999999999998765 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|++.++++++|||.|||||+..++++.++|++++|++++++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 104 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~g~~~d~~i~~l~l~gvsSil~~iNfi~Ti~~~R~~g~~~~~~Pl 183 (513)
T MTH00103 104 LLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPL 183 (513)
T ss_pred HHhHHHHHHHHHHhccCCCCCCCeECCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcccH
Confidence 99999999999999977789999999999976677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
|+|+.++|++++++++|+++++++|++.||+++++||||.+||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 184 f~w~~~~ts~l~l~a~Pvla~a~~mll~dr~~~t~ff~p~~ggdp~L~qhLFWffGHPeVYi~ilPa~g~~s~ii~~~~~ 263 (513)
T MTH00103 184 FVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSG 263 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCchhhhhhHHHhccchhhhhhccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 241 -KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 241 -kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
||+|||+.+++|+++++++|+.||+||||++|++.+.|.+|+++|++|++||++|+|||++|+++||+|+++|++|+++
T Consensus 264 ~~~~f~~~~~v~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~IavPt~vk~f~w~atl~~g~~~~~~~~~~~l~ 343 (513)
T MTH00103 264 KKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALG 343 (513)
T ss_pred CCcchhhHHHHHHHHHHHHHhhhhchhheeccCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCchHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
|+++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++++|||+||++||++||+++|+|||++++|+++
T Consensus 344 fi~~F~~GGitGv~la~~~~d~~~HdTy~VvaHFH~vl~~g~v~~~~~~~y~w~p~~~G~~~~~~l~~~~f~~~~ig~~~ 423 (513)
T MTH00103 344 FIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFTIMFVGVNM 423 (513)
T ss_pred HHHHHHhcccchhhhcchhhhhHhhccHHHhhhhhhhhhhhHHHHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| ++++||.++|+|++++.+|+++|++++++|++++|+. ..|||+++|+||+++||
T Consensus 424 ~f~p~~~~Gl~gmPRR~~~Yp~-~~~~wN~isSiGs~Is~~~il~Fi~~lweS~~~~r~v---~~~~w~~~sLEW~~~sP 499 (513)
T MTH00103 424 TFFPQHFLGLSGMPRRYSDYPD-AYTTWNTVSSMGSFISLTAVMLMIFMIWEAFASKREV---LTVELTTTNLEWLHGCP 499 (513)
T ss_pred HHhHhhhccCCCCCcccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cCCCCCCCCcccCCCCC
Confidence 9999999999999999999987 7999999999999999999999999999999988755 34999999999999999
Q ss_pred CCCCCCCcCcccc
Q psy2379 480 PPVYNFAFIPLIH 492 (585)
Q Consensus 480 Pp~~nf~~~P~V~ 492 (585)
||+|||+|+|.|+
T Consensus 500 pp~Hnf~e~P~v~ 512 (513)
T MTH00103 500 PPYHTFEEPTYVK 512 (513)
T ss_pred CCccCCCCCCccC
Confidence 9999999999885
No 9
>MTH00142 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=1.5e-133 Score=1096.91 Aligned_cols=483 Identities=37% Similarity=0.767 Sum_probs=468.0
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|.||..|+. .+.++|+|||++|+||++|+|++++|+.+| ++||++|+|+|+||++|||+|++|||
T Consensus 25 ~~~g~~la~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~~Mif~~v~P~~~ggfgn~liPl~iga~dmafPRlN~lsfW 101 (511)
T MTH00142 25 GMVGTGLSLLIRAELGQPGS---LLGDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAFPRMNNMSFW 101 (511)
T ss_pred HHHHHHHHHHHHccccCCcc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccChhhhhhHHH
Confidence 57899999999999999963 566889999999999999999999998655 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...+.+++..|++.++++++|||.|||||...+.++.++|++++|+++.++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 102 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~i~~l~l~gisSil~~iNfi~Ti~~~R~~g~~~~~~Pl 181 (511)
T MTH00142 102 LLPPALLLLLSSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMKFERVPL 181 (511)
T ss_pred HHHHHHHHHHHHhcccCCCCCCcccCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEeCH
Confidence 99999999999999988899999999999977677789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
++|+.++|++++++++|+++++++|+++||++|++||+|.+||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 182 f~w~~~~ts~l~l~a~P~La~~~~mll~dr~~~t~Ff~~~~ggd~~l~qhLFWffGHPeVYi~ilPa~g~~~~i~~~~~~ 261 (511)
T MTH00142 182 FVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIINHYSG 261 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCceEcccCCCCCeeeeeeeehhhcchhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 241 K-RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 241 k-plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
| ++|+|+.+++|+++++++|+.||+||||++|++.+.|.+|+++|++|++||++|+|||++|+++||+++++|++|+++
T Consensus 262 ~~~~f~~~~~v~a~~~i~~l~~~Vw~HHmft~G~~~~~~~~f~~~t~~iaiPt~v~~f~w~~tl~~g~i~~~~p~l~~~~ 341 (511)
T MTH00142 262 KKEVFGTLGMIYAMLSIGLLGFIVWAHHMFTVGMDVDTRAYFTAATMVIAVPTGIKVFSWLATLHGSKVKYEPPMLWALG 341 (511)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhchhheeccCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
+++.|++||+||+++|+.++|.++|||||||||||+++.+|++++.++|+|||+||++||+++||++|+|||++++|+++
T Consensus 342 fi~~F~~GG~tGv~la~~~~d~~~HdT~~VvaHFH~~l~~g~v~~~f~g~~yw~P~~tGr~~~~~l~~~~f~~~~iG~~~ 421 (511)
T MTH00142 342 FIFLFTVGGLTGIVLANSSLDVVLHDTYYVVAHFHYVLSMGAVFALFAGFIHWFPLFTGLTLNPRWLKAHFYTMFIGVNL 421 (511)
T ss_pred HHHHHHhhccccccccchhhhhhhccchhhccccceeeechHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| .+++||.++++|++++.+|+++|++|+++|+++||+. ..|||+++|+||++++|
T Consensus 422 ~f~p~h~lGl~GmPRR~~dY~~-~~~~wN~isSiGs~I~~~g~llfl~~l~~S~~~~r~~---~~~~w~~~sLEW~~~sP 497 (511)
T MTH00142 422 TFFPQHFLGLAGMPRRYSDYPD-AYTTWNVVSSLGSMISFIAVLMFVFIVWESFVSQRLV---MWSSHLSTSLEWSHRLP 497 (511)
T ss_pred HhhhhhhccCCCCCCccccCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---ccCCCCCCCcccccCCC
Confidence 9999999999999999999976 7999999999999999999999999999999988765 35999999999999999
Q ss_pred CCCCCCCcCccc
Q psy2379 480 PPVYNFAFIPLI 491 (585)
Q Consensus 480 Pp~~nf~~~P~V 491 (585)
||+|||+|+|.+
T Consensus 498 pp~hnf~elP~~ 509 (511)
T MTH00142 498 PDFHTYDELPIL 509 (511)
T ss_pred CcccCCCCCcee
Confidence 999999999976
No 10
>MTH00184 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=1.2e-133 Score=1103.14 Aligned_cols=487 Identities=41% Similarity=0.820 Sum_probs=469.7
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. .+.+++.|||++|+||++|+|++++|+.+ |++||++|+|+|+||++|||+|++|||
T Consensus 29 ~~~g~~ls~~iR~eL~~p~~---~~~~~~~Yn~~~T~Hg~~Mif~~~~p~~~ggfgn~liPl~lga~dmafPrln~~sfW 105 (519)
T MTH00184 29 GMIGTAFSMLIRLELSAPGS---MLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAFPRLNNISFW 105 (519)
T ss_pred HHHHHHHHHHHHhhhcCCcc---ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhHHHH
Confidence 67899999999999999964 56678899999999999999999999865 599999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...+..++..|++.++++++|||.|||||...++|+.++|++++++++.++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 106 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~i~~l~l~gissilg~infi~Ti~~~R~~gm~~~~~Pl 185 (519)
T MTH00184 106 LLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGITMDRMPL 185 (519)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCeecCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999988899999999999987788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc-
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS- 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~- 239 (585)
++|+.++|++++++++|+++++++|++.||++|++||||.+||||++||||||+|||||||++++|++|++||++|+++
T Consensus 186 f~w~~~~t~~l~l~~~Pvl~~~~~mll~dr~~~t~ff~~~~ggdp~L~qhLFWffGHPeVYi~ilPa~g~~~~ii~~~~g 265 (519)
T MTH00184 186 FVWSILVTTFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISQIIPTFAA 265 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCeeeeeceeeeeCCcchHHHHHhHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|||+|||+.+++|+.+++++|+.||+||||++|++.+.|.+|+++|++||+||++|+|||++|+++||+|+++|++|+++
T Consensus 266 ~k~~~g~~~~v~a~~~i~~l~~~Vw~HHmft~G~~~~~~~~f~~~T~~IavPtgikvf~w~~tl~~g~i~~~~p~l~~~~ 345 (519)
T MTH00184 266 KKQIFGYLGMVYAMVSIGILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKIFSWIATIFGGSLRLDTPMLWAIG 345 (519)
T ss_pred CCcccccHHHHHHHHHHHHheeeecccceeccCCChhHHHHHHHHHHHHHhcchhHHHHHHHHHcCCCCCCChHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++++|++||+||+++|++++|.++|||||||||||+++.+|++++++|++|||+||++||++||+++|+|||++++|+++
T Consensus 346 fi~~F~~GG~tGi~la~~~~d~~~HdT~~VVaHFH~vl~~g~vf~~~ag~yyw~P~~tGr~~~~~l~~~~fwl~~iG~~l 425 (519)
T MTH00184 346 FVFLFTMGGLTGIVLANSSLDVVLHDTYYVVAHFHYVLSMGAVFAIFGGFYYWFGKITGYCYNEVYGKIHFWLMFIGVNL 425 (519)
T ss_pred HHHHHHhhccchhhhchhhhHHhhcCcchhhhhhHHHhHHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||+++|+| ++++||+++++|++++.+|+++|++|+++|++++|+.....+|||+++|+||++++|
T Consensus 426 ~f~pm~~~Gl~GmpRR~~~y~d-~~~~~~~issiGa~I~~~g~llFi~nl~~S~~~~r~~~~~~~~~~~~~sLEW~~~sP 504 (519)
T MTH00184 426 TFFPQHFLGLAGLPRRYSDFHD-SFAGWNQISSLGSVISIVGVVWFIYIVYDAYVREIKFVGWVEDSGHYPSLEWAQTSP 504 (519)
T ss_pred HHHHHhhccccccccccCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCCCCCccccCCCC
Confidence 9999999999999999999976 799999999999999999999999999999987765432235899999999999999
Q ss_pred CCCCCCCcCcccc
Q psy2379 480 PPVYNFAFIPLIH 492 (585)
Q Consensus 480 Pp~~nf~~~P~V~ 492 (585)
||+|||+|+|.++
T Consensus 505 pp~hnf~e~P~v~ 517 (519)
T MTH00184 505 PAHHTYNELPYVY 517 (519)
T ss_pred CCccCCCCCceec
Confidence 9999999999875
No 11
>MTH00116 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=2.4e-133 Score=1097.37 Aligned_cols=485 Identities=37% Similarity=0.765 Sum_probs=466.3
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|+||..|+. .+.++|.|||++|+||++|+|++++|..+| ++||++|+|+|+||++|||+|++|||
T Consensus 27 ~~~G~~~s~liR~eL~~pg~---~~~~~~~Yn~~~T~HG~iMiff~vmP~~~ggfgn~lvPl~lga~dmafPRlN~~sfW 103 (515)
T MTH00116 27 GMVGTALSLLIRAELGQPGT---LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 (515)
T ss_pred HHHHHHHHHHHHhccCCCcc---ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHH
Confidence 57899999999999999963 556889999999999999999999999765 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|.+.++++++|||.|||||+..++++.++|++++|++++++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 104 l~~~~~~~~~~s~~~~~g~~~gWT~YpPLs~~~~~~g~~~d~~i~~l~l~gisSil~~iNfi~Ti~~~R~~g~~~~~~pl 183 (515)
T MTH00116 104 LLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMSQYQTPL 183 (515)
T ss_pred HHhHHHHHHHHHHhccCCCCCCCcCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccCH
Confidence 99999999999999977789999999999976667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc-
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS- 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~- 239 (585)
++|+.++|++++++++|+++++++|++.||+++++||||.+||||++||||||+|||||||++++|++|++||++|+++
T Consensus 184 f~w~~~~ts~l~l~a~PvLa~~~~mll~dr~~~t~ff~p~~ggdp~L~qhLFWffGHPeVYi~ilPa~g~~s~ii~~~~~ 263 (515)
T MTH00116 184 FVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVTYYAG 263 (515)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCccccccccCCCcchhhhhhhhcccchhhhhhccHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|||+|||+.+++++.+|+++|+.||+||||++|++.+.|.+|+++|++||+||++|+|||++|+++||+++++|++|+++
T Consensus 264 ~~~~fg~~~~v~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~iaiPt~vkvf~w~~tl~~g~~~~~~p~l~~~~ 343 (515)
T MTH00116 264 KKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLWALG 343 (515)
T ss_pred CCcchhhHHHHHHHHHHHHheeeecccccccCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++|+|||+||++||++|||++|+|||++++|+++
T Consensus 344 fi~~F~~GG~tGv~la~~~~d~~~HdTy~VvaHFH~vl~~g~v~~~~~g~~yw~P~~~Gr~~~~~l~~~~fw~~~iG~~~ 423 (515)
T MTH00116 344 FIFLFTIGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYTLHQTWTKAQFGVMFTGVNL 423 (515)
T ss_pred HHHHHHhcccchhhhcchhhhhhhccchhhhcchheeeehhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| ++++||.++++|++++.+|+++|+++++++++++|+. .+|+|+++|+||+++||
T Consensus 424 ~f~pmh~~Gl~GmPRR~~~Yp~-~~~~~n~~ssiGs~i~~ig~llFi~~l~~s~~~~r~~---~~~~~~~~tLEW~~~sP 499 (515)
T MTH00116 424 TFFPQHFLGLAGMPRRYSDYPD-AYTLWNTISSIGSLISMTAVIMLMFIIWEAFSSKRKV---LQPELTTTNIEWIHGCP 499 (515)
T ss_pred HHHHHHHhccccccceeccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---CCCCCCCCCceeCCCCC
Confidence 9999999999999999999987 7999999999999999999999999999888766543 34667789999999999
Q ss_pred CCCCCCCcCccccc
Q psy2379 480 PPVYNFAFIPLIHQ 493 (585)
Q Consensus 480 Pp~~nf~~~P~V~~ 493 (585)
||+|||+|+|.+.+
T Consensus 500 pp~hnF~e~P~v~~ 513 (515)
T MTH00116 500 PPYHTFEEPAFVQV 513 (515)
T ss_pred CccccCCCCceeec
Confidence 99999999998853
No 12
>MTH00182 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=4.6e-133 Score=1098.57 Aligned_cols=490 Identities=40% Similarity=0.813 Sum_probs=470.5
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sf 79 (585)
++++|+++|++||+||+.|+. .+.+++.|||++|+||++|+|++++|+++ |++||++|+|+|+||++|||+|++||
T Consensus 28 ~~~~g~~ls~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~~Mif~~~~p~~~ggfgn~lvPl~lga~dmafPrln~~sf 104 (525)
T MTH00182 28 AGMIGTAFSMLIRLELSAPGA---MLGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRLNNISF 104 (525)
T ss_pred HHHHHHHHHHHHHhccccCCc---ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccchhhhhHHH
Confidence 368999999999999999964 56678899999999999999999999865 59999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 80 WMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
|+...|.+++..|++.++++++|||.|||||...++++.++|++++|+++.++||+++++|+++|+.|+|+|||+++|||
T Consensus 105 wl~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~~~~l~l~gissil~~infi~Ti~~~R~~gm~~~~~P 184 (525)
T MTH00182 105 WLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVTFNRLP 184 (525)
T ss_pred HHHhHHHHHHHHHhccCCCccCCCeeCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 99999999999999998889999999999997767788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+++|+.++|++++++++|+++++++|++.||+++++||+|..||||++||||||+|||||||++++|++|++||++|+++
T Consensus 185 lf~w~~~~t~~l~l~~~Pvl~~~~~mll~dr~~~t~ff~~~~ggdp~L~qhLFWffGHPeVyi~ilPa~g~~~~ii~~~s 264 (525)
T MTH00182 185 LFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGMISQIIPTFV 264 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccCCCCcchhhhhHHhccCceEEEecccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH
Q psy2379 240 S-KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI 318 (585)
Q Consensus 240 ~-kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l 318 (585)
| |++|||+.+++|+.+++++|+.||+||||++|+|.+.|.+++++|++|++||++|+|||++|+++||+++++|++|++
T Consensus 265 ~~~~~fg~~~~i~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~IavPt~ikvf~w~~Tl~gg~~~~~~p~l~~~ 344 (525)
T MTH00182 265 AKKQIFGYLGMVYAMLSIGILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIYGGTLRLDTPMLWAM 344 (525)
T ss_pred CCCCCcccHHHHHHHHHHHHHeeeecccceeccCCCchHHHHHHHHHHHHHhchHhHHHHHHHHhcCCCCCCChHHHHHH
Confidence 6 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+++++|++||+||+++|+.++|.++|||||||||||+++.++++++++|++|||+||++||++||+++|+|||++++|++
T Consensus 345 ~fi~~F~~GG~tGi~la~~~~d~~~HdT~~VVaHFH~vl~~g~~f~~~~g~yyw~P~~tGr~~~~~l~~~~fwl~~iG~~ 424 (525)
T MTH00182 345 GFVFLFTLGGLTGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIFGGFYYWFGKITGYCYNELYGKIHFWLMFIGVN 424 (525)
T ss_pred HHHHHHhhcccCcccccchhhhhhcccCcchhchhhHHhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCC-CCCccccccC
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPW-NGRTLEWSTS 477 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW-~~~tLEW~~~ 477 (585)
++|+|||++|++|||||++||++ ++++||+++++||+++.+|+++|++|+++|+++||+.....+||| +++|+||+++
T Consensus 425 l~f~pm~~~Gl~GmPRR~~~y~~-~~~~~n~issiGa~I~~~g~llFi~~l~~Sl~~~r~v~~~~~~~~~~~~tLEW~~~ 503 (525)
T MTH00182 425 LTFFPQHFLGLAGFPRRYSDFAD-AFAGWNLVSSLGSIISIVGVVWFIYIIYDAYVREEKFIGWKEGTGESWASLEWVHS 503 (525)
T ss_pred HHHhhhhhccccccccccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCCCceecCcC
Confidence 99999999999999999999976 899999999999999999999999999999998887654345665 6889999999
Q ss_pred CCCCCCCCCcCcccccC
Q psy2379 478 SPPPVYNFAFIPLIHQS 494 (585)
Q Consensus 478 sPPp~~nf~~~P~V~~~ 494 (585)
||||+|||+|+|.+..|
T Consensus 504 sPpp~hnF~e~P~v~~~ 520 (525)
T MTH00182 504 SPPLFHTYNELPFVYKS 520 (525)
T ss_pred CCCCccCCCCCceEecc
Confidence 99999999999988744
No 13
>MTH00007 COX1 cytochrome c oxidase subunit I; Validated
Probab=100.00 E-value=7.6e-133 Score=1093.77 Aligned_cols=484 Identities=37% Similarity=0.754 Sum_probs=467.9
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. .+.++|.|||++|+||++|+|++++|+.+ |++||++|+|+|+||++|||+|++|||
T Consensus 24 ~~~g~~~al~iR~eL~~p~~---~~~~~~~Yn~~~T~HG~~Mif~~v~p~~~~gfgn~lvPl~lga~dmafPrln~~sfw 100 (511)
T MTH00007 24 GLLGTSMSLLIRIELGQPGA---FLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAFPRLNNMSFW 100 (511)
T ss_pred HHHHHHHHHHHHHhhcCCcc---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhHH
Confidence 67899999999999999964 66788999999999999999999999865 599999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|++.++++++|||.|||||...++++.++|++++|+++.++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 101 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~~~~l~l~gissil~~infi~Ti~~~R~~gm~~~~~Pl 180 (511)
T MTH00007 101 LLPPALILLVSSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLRLERIPL 180 (511)
T ss_pred HHhHHHHHHHHHhccCCCCCCCcEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecH
Confidence 99999999999998877789999999999976566678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
++|+.++|++++++++|++++++.|++.||++|++||+|..||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 181 f~w~~~~t~~l~l~a~PvL~~~~~mll~dr~~~t~ff~~~~ggdp~l~q~LFWffGHPeVYi~ilPa~g~~~~ii~~~~~ 260 (511)
T MTH00007 181 FVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGAISHIVTHYAG 260 (511)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCceeecccCCCCceeehhhhhhccchhhHHHHHHHHHHHHHhHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 241 KR-LFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 241 kp-lfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|| +|+|+.+++++..|+++|+.||+||||++|++.+.|.+|+++|++|++||++|+|||++|+++||+|+++|++|+++
T Consensus 261 ~~~~~~~~~~i~a~~~i~~l~~~Vw~HHmf~~g~~~~~~~~f~~~T~~iaiPtgikvF~w~~Tl~~~~i~~~~p~~~~~~ 340 (511)
T MTH00007 261 KLEPFGTLGMIYAMLGIGVLGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIHGSPIKYETPMLWALG 340 (511)
T ss_pred CcchhHHHHHHHHHHHHHHhhccccccceeccCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 87 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++|+|||+||++||+++||++|+|||++++|+++
T Consensus 341 fi~~F~~GG~tGv~la~~~~d~~lHdT~~VvaHFH~vl~~g~v~~~~~g~~yw~P~~tGr~~~~~l~~~~fwl~~iG~~~ 420 (511)
T MTH00007 341 FIFLFTTGGLTGIVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIFAAFNHWFPLFTGLTLHDRWAKAHFFLMFLGVNL 420 (511)
T ss_pred HHHHHHHhccchhhhcchhhhhhhcCceeeehhhhhhhhhhHHHHHHHHHhhhcccccceehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| .+.++|.++++|++++.+|+++|++|+++|+++||+. .+|||+++|+||+++||
T Consensus 421 ~f~p~~~~Gl~GmPRR~~~Y~~-~~~~~n~~ssiGa~il~ig~llfi~nl~~Sl~~~r~a---~~npw~~~tLEW~~~sP 496 (511)
T MTH00007 421 TFFPQHFLGLSGMPRRYSDYPD-AYTKWNVVSSFGSMLSFVALLLFIFILWEAFSAQRGV---IASPHMSSSLEWQDTLP 496 (511)
T ss_pred HHhHHHhhcccCCCceecCCCc-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCcc---cCCCCCCCChhhccCCC
Confidence 9999999999999999999976 7899999999999999999999999999999887654 35999999999999999
Q ss_pred CCCCCCCcCcccc
Q psy2379 480 PPVYNFAFIPLIH 492 (585)
Q Consensus 480 Pp~~nf~~~P~V~ 492 (585)
||+|||+|+|.|.
T Consensus 497 pp~hnf~e~P~v~ 509 (511)
T MTH00007 497 LDFHNLPETGIIT 509 (511)
T ss_pred CcccCCCCCcccC
Confidence 9999999999985
No 14
>MTH00037 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=9.5e-133 Score=1091.85 Aligned_cols=485 Identities=38% Similarity=0.781 Sum_probs=467.7
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sf 79 (585)
++++|+++|++||+||+.|+. .+.+++.|||++|+||++|+|++++|+.+| ++||++|+|+|+||++|||+|++||
T Consensus 26 ~~~~G~~ls~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~iMif~~~mP~~~ggfgn~lvPl~lGa~dmafPrlN~~sf 102 (517)
T MTH00037 26 AGMVGTAMSVIIRTELAQPGS---LLQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF 102 (517)
T ss_pred HHHHHHHHHHHHHhcccCCcc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHH
Confidence 367899999999999999964 567888999999999999999999998665 9999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 80 WMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
|+...|.+++..|++.++++++|||.|||||...+.++.++|+++++++++++||+++++|+++|+.|+|+|||+++|+|
T Consensus 103 Wl~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~i~~l~l~gisSil~~infi~Ti~~~R~pgm~~~~~P 182 (517)
T MTH00037 103 WLIPPSFLLLLASAGVESGAGTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMTFDRLP 182 (517)
T ss_pred HHHhHHHHHHHHHHhcccCcCCCceEcCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Confidence 99999999999999888888999999999997666677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+++|+.++|+++.++++|++++++.+++.||++|++||+|..||||++||||||+|||||||++++|++|++||++|+++
T Consensus 183 lf~w~~~~t~~l~l~a~Pvl~~~l~mll~dr~~~t~ff~~~~ggdp~l~q~LFWffGHPeVYi~ilPa~g~~~~ii~~~~ 262 (517)
T MTH00037 183 LFVWSVFITAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGMISHVIAHYS 262 (517)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCeehhhhHHHHhccchhhhhhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH
Q psy2379 240 SK-RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI 318 (585)
Q Consensus 240 ~k-plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l 318 (585)
|| |+|+|+.+++|+++++++|+.||+||||++|++.+.|.+++++|++|++||++|+|||++|+++||+++++|++|++
T Consensus 263 ~k~~~f~~~~~v~a~~~i~~~~~~Vw~HHmf~~G~~~~~~~~f~~~T~~iavPt~vk~f~w~atl~~~~i~~~~p~~~~l 342 (517)
T MTH00037 263 GKQEPFGYLGMVYAMIAIGILGFLVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWMATLQGSNLRWETPLLWAL 342 (517)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhccccceeecCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCCcHHHHHH
Confidence 88 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+++++|++||+||+++|+.++|.++|||||||||||+++.+|++++.++|+|||+||++||++||+++|+|||++++|++
T Consensus 343 ~f~~~f~~GG~tGi~la~~~~d~~~HdTy~VvaHFH~vl~~g~v~~~f~g~~yw~P~~tG~~~~~~l~~~~f~l~~iG~~ 422 (517)
T MTH00037 343 GFVFLFTIGGLTGIVLANSSIDVVLHDTYYVVAHFHYVLSMGAVFAIFAGFTHWFPLFSGVSLHPLWSKVHFFLMFIGVN 422 (517)
T ss_pred HHHHHHHhhccchhhhcchhhhhhhccchhhhcchhhhhhhhHHHHHHHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccC-
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTS- 477 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~- 477 (585)
++|+|||++|++|||||++||+| .++++|.++++|++++.+|+++|++|+++|+++||+. ..|||+++|+||+++
T Consensus 423 ~~f~p~h~lGl~GmPRR~~dYp~-~~~~wN~isSiGs~I~~~~~llFi~~l~~Sl~~gr~v---~~~~w~~~sLEW~~~~ 498 (517)
T MTH00037 423 LTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSTISLVATLFFLFLIWEAFASQREV---ISPEFSSSSLEWQYSS 498 (517)
T ss_pred HHHHHHhhcccCCCCccccCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cCCCCCCCChhhCCCC
Confidence 99999999999999999999977 7999999999999999999999999999999988765 348999999999986
Q ss_pred CCCCCCCCCcCcccc
Q psy2379 478 SPPPVYNFAFIPLIH 492 (585)
Q Consensus 478 sPPp~~nf~~~P~V~ 492 (585)
+|||+|||+|+|.|.
T Consensus 499 ~Ppp~hnf~e~P~v~ 513 (517)
T MTH00037 499 FPPSHHTFDETPSTV 513 (517)
T ss_pred CCCCccCCCCCceee
Confidence 699999999999764
No 15
>MTH00167 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=2.1e-132 Score=1090.58 Aligned_cols=483 Identities=38% Similarity=0.790 Sum_probs=467.6
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|+||..|+. .+.+++.|||++|+||++|+|++++|+.+| ++||++|+|+|+||++|||+|++|||
T Consensus 27 ~~~G~~~s~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~~Miff~~mP~~~ggfgn~l~Pl~lga~dmafPRln~~sfW 103 (512)
T MTH00167 27 GMVGTALSLLIRAELSQPGS---LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 (512)
T ss_pred HHHHHHHHHHHHHHHhCCCc---ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHHHH
Confidence 57899999999999999963 556788999999999999999999999765 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|++.++++++|||.|||||+..++|+.++|+++++++++++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 104 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~i~~l~l~gvsSil~~infi~Ti~~~R~~g~~~~~~Pl 183 (512)
T MTH00167 104 LLPPSLLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGITQYQTPL 183 (512)
T ss_pred HHHHHHHHHHHHHhccCCCCCCceECCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999998877889999999999976678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
|+|+.++|++++++++|+++++++|++.||+++++||||.+||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 184 f~w~~~~ts~l~l~a~Pvla~~~~mll~dr~~~t~ff~p~~ggdp~L~qhLFWffGHPeVYi~ilPa~g~vs~ii~~~~~ 263 (512)
T MTH00167 184 FVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVVYYSG 263 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCChHHHHHHHHhcCcchheeeccchHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 241 K-RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 241 k-plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
| ++|||+.+++++..++++++.||+||||++|++.+.|.+|+++|++|++||++|+|||++|+++||+++++|++|+++
T Consensus 264 ~~~~~g~~~~~~a~~~ia~l~~~Vw~HHmft~G~~~~~~~~f~~~T~~iavPtgv~vf~w~~tl~~g~~~~~~p~~~~~~ 343 (512)
T MTH00167 264 KKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKVFSWLATLHGGKIKWETPMLWALG 343 (512)
T ss_pred CCcccchhHHHHHHHHHHHHhhhhhhhheeccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 5 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
+++.|++||+||+++|+.++|.++|||||||||||+++.+|++++.++|+|||+||++||++|||++|+|||++++|+++
T Consensus 344 fi~~F~~GG~tGi~la~~~~d~~~HdTy~VvaHFH~~l~~g~v~~~f~g~~yw~P~~~G~~~~~~l~~~~f~~~~iG~~~ 423 (512)
T MTH00167 344 FIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGLTLNETWTKIHFFVMFIGVNL 423 (512)
T ss_pred HHHHHHhhccchhhhcchHhhhhhccceeeccchhhhhehhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| .++++|+++++|++++.+|+++|++|+++|++++|+.. .|||+++|+||+++||
T Consensus 424 ~f~p~~~~Gl~GmPRR~~~Yp~-~~~~~n~issiGa~i~~~g~llFi~~l~~Sl~~~r~~~---~~~w~~~sLEW~~~sP 499 (512)
T MTH00167 424 TFFPQHFLGLAGMPRRYSDYPD-AYTLWNVVSSIGSLISLVAVILFLFIIWEAFSSKRKLL---PVELTSTNVEWLHGCP 499 (512)
T ss_pred HHHHHHHhhcccccceeccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC---CCCCCCCCcccCCCCC
Confidence 9999999999999999999976 79999999999999999999999999999999887653 4999999999999999
Q ss_pred CCCCCCCcCccc
Q psy2379 480 PPVYNFAFIPLI 491 (585)
Q Consensus 480 Pp~~nf~~~P~V 491 (585)
||+|||+|+|.+
T Consensus 500 pp~hnf~e~P~v 511 (512)
T MTH00167 500 PPHHTWEEPPFV 511 (512)
T ss_pred CcccCCCcCCCC
Confidence 999999999965
No 16
>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=1.1e-132 Score=1087.32 Aligned_cols=472 Identities=33% Similarity=0.688 Sum_probs=455.5
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. ++.++|+|||++|+||++|+|++++|+.+| ++||++|+|+|+||++|||+|++|||
T Consensus 28 ~~~G~~~sl~iR~eL~~pg~---~~~~~~~Yn~~~T~HG~iMiff~~mP~~~ggfgN~lvPl~lGa~dmafPrlN~~SfW 104 (511)
T MTH00048 28 GFVGLSLSLLIRLNFLDPYY---NVISLDVYNFLITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLPRLNALSAW 104 (511)
T ss_pred HHHHHHHHHHHHHHHhCccc---ccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHH
Confidence 57899999999999999974 678899999999999999999999999765 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|++.| +++|||.|||||...++|+.++|++++|++++++||+++++|+++|+.|+|+||+ .+|+|+
T Consensus 105 l~~~~~~l~~~s~~~g--~~~gWT~YpPLs~~~~~~g~~~d~~i~~l~l~gvsSil~~iNfi~Ti~~~R~~g~-~~r~Pl 181 (511)
T MTH00048 105 LLVPSIVFLLLSMCLG--AGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTNV-FSRTSI 181 (511)
T ss_pred HHHHHHHHHHHHHhhC--CCCCceEcCCCcCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCcccH
Confidence 9999999999999875 6899999999997667889999999999999999999999999999999999996 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
++|+.++|++++++++|++++++.|++.||++|++||||.+||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 182 f~w~~~~Ts~l~l~a~Pvl~~~l~mll~dr~~gt~ff~p~~ggdp~L~qhLFWffGHPeVYi~iLPa~g~~s~ii~~~s~ 261 (511)
T MTH00048 182 ILWSYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDPVLFQHMFWFFGHPEVYVLILPGFGIISHICLSLSN 261 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCeehhhhHHHHhccchheeecccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHH-HHH
Q psy2379 241 -KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPIL-WTI 318 (585)
Q Consensus 241 -kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~l-f~l 318 (585)
||+|||+.+++|+.+|+++|+.||+||||++|++++.|.+|+++|++|++||++|+|||++|+++||+|+++|++ |++
T Consensus 262 ~~~~fg~~~~v~a~~~i~~l~~~Vw~HHmft~G~~~~~~~~f~~~T~~IavPt~ikvF~w~atl~~g~~~~~~p~~l~~~ 341 (511)
T MTH00048 262 NDDPFGYYGLVFAMFSIVCLGSVVWAHHMFTVGLDVKTAVFFSSVTMIIGVPTGIKVFSWLYMLLNSRVRKSDPVVWWVV 341 (511)
T ss_pred CcchhhhHHHHHHHHHHHHHhcccccchhhccccChhHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCChHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998887 899
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+|+++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++++|||+||++||+++|+++|+|||++++|++
T Consensus 342 ~fi~~F~~GG~tGv~la~~~~d~~~HdTy~VvaHFH~vl~~g~v~~~~~~~~~w~P~~tG~~l~~~l~~~~f~~~fiG~~ 421 (511)
T MTH00048 342 SFIVLFTIGGVTGIVLSASVLDNVLHDTWFVVAHFHYVLSLGSYSSVVIMFIWWWPLITGLSLNKYLLQCHCIISMIGFN 421 (511)
T ss_pred HHHHHHHHhccchHhhhhhhhHHhhcccHhhhcchhhhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-ccccccC
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGR-TLEWSTS 477 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~-tLEW~~~ 477 (585)
++|+|||++|++|||||++||++ +|+.+|+++++|++++.+|+++|++|+++|+++||+.. |||+++ |+||+++
T Consensus 422 ~~f~p~h~lGl~GmPRR~~~y~~-~~~~~N~iSSiGs~I~~ig~llFi~~l~~Sl~~gr~~~----~~w~~~tslEW~~~ 496 (511)
T MTH00048 422 LCFFPMHYFGLCGLPRRVCVYEP-SYYWINVVCTVGSFISAFSGCFFVFILWESLVVKNEVL----GLWGSSSCVVNVLM 496 (511)
T ss_pred HHHHHHHHHhhhcccccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC----CCCCCCcccccccC
Confidence 99999999999999999999976 79999999999999999999999999999999876543 789977 4999999
Q ss_pred CCCCCCC
Q psy2379 478 SPPPVYN 484 (585)
Q Consensus 478 sPPp~~n 484 (585)
||||+||
T Consensus 497 sPPp~Hn 503 (511)
T MTH00048 497 SPVPYHN 503 (511)
T ss_pred CCChhhh
Confidence 9999998
No 17
>MTH00153 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=2.3e-132 Score=1087.48 Aligned_cols=484 Identities=39% Similarity=0.754 Sum_probs=468.9
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|.||..|+. .+.+++.|||++|+||++|+|++++|+.+ |++||++|+|+|+||++|||+|++|||
T Consensus 25 ~~~G~~~s~liR~eL~~p~~---~~~~~~~Yn~~~T~HG~iMiff~~mP~~~ggfgn~liPl~lGa~d~afPrlN~lsfW 101 (511)
T MTH00153 25 GMVGTSLSLLIRAELGQPGS---LIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFW 101 (511)
T ss_pred HHHHHHHHHHHHhhhcCCcc---ccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccChhhhhhHHH
Confidence 57899999999999999964 56788999999999999999999999865 499999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|.+.++++++|||.|||||...++|+.++|+++++++++++||+++++|+++|+.|+|+||++++|+|+
T Consensus 102 l~~~~~~~~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~~~~l~~l~l~gvssil~~infi~Ti~~~R~~g~~~~~~Pl 181 (511)
T MTH00153 102 LLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMPL 181 (511)
T ss_pred HHhHHHHHHHHHHHccCCCCCCeEECCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccH
Confidence 99999999999999988899999999999976678888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
++|+.++|++++++++|+++++++|+++||++|++||+|..||||++||||||+|||||||++++|++|++||++|+++|
T Consensus 182 f~W~~~~T~~l~l~a~PvLa~~~~mll~dr~~~t~Ff~~~~ggdplL~q~lFWffGHPeVYi~ilPa~g~~~~ii~~~~~ 261 (511)
T MTH00153 182 FVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIISQESG 261 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEccccCCCCeeeehhhhhhccchHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 241 -KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 241 -kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
||+|+|+.+++++.+++++|+.||+||||++|++.+.|.+++++|++|++||++|+|||++|+++||+++++|++|+++
T Consensus 262 ~~~~~~~~~~i~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~iavPt~v~~f~w~~tl~~~~~~~~~~~~~~l~ 341 (511)
T MTH00153 262 KKETFGTLGMIYAMLAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGSQINYSPSLLWALG 341 (511)
T ss_pred CCcchHHHHHHHHHHHHHHHhcccchhheeeccCChhHHHHHHHHHHHHHhhhHhHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
|++.|++||+||+++|+.++|.++|||||||||||+++.+|++++.++++|||+||++||++|||++|+|||++++|+++
T Consensus 342 f~~~f~~GG~tGv~~~~~~~d~~~H~T~~VvaHFH~~l~~g~~~~~~~~~y~~~P~~~gr~~~~~l~~~~f~~~~vG~~l 421 (511)
T MTH00153 342 FVFLFTIGGLTGVVLANSSIDIILHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFTGLTMNPKWLKIQFFIMFIGVNL 421 (511)
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhcccHHhhcchhhheehhHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| .+++||.++++|++++++|+++|++|+++|+++||+. ..|||+++|+||++++|
T Consensus 422 ~f~pmh~~Gl~GmPRR~~~Yp~-~~~~~n~vsSiGa~Il~ig~llFi~~l~~Sl~~gr~v---~~~~w~~~sLEW~~~sP 497 (511)
T MTH00153 422 TFFPQHFLGLAGMPRRYSDYPD-AYTSWNVISSIGSTISLISILFFIFIIWESMISKRPV---LFSLNLSSSIEWLQNLP 497 (511)
T ss_pred HHHHHHhccCCCCCCcccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---ccCCCCCCCcccccCCC
Confidence 9999999999999999999976 7999999999999999999999999999999988765 34999999999999999
Q ss_pred CCCCCCCcCcccc
Q psy2379 480 PPVYNFAFIPLIH 492 (585)
Q Consensus 480 Pp~~nf~~~P~V~ 492 (585)
||+|||+|+|.|.
T Consensus 498 pp~hnf~e~P~v~ 510 (511)
T MTH00153 498 PAEHSYSELPLLT 510 (511)
T ss_pred CcccCCCCCceec
Confidence 9999999999875
No 18
>MTH00026 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=1.8e-132 Score=1093.27 Aligned_cols=487 Identities=38% Similarity=0.784 Sum_probs=468.6
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. .+.++|.|||++|+||++|+|++++|.++| ++||++|+|+|+||++|||+|++|||
T Consensus 28 ~~~G~~ls~liR~eL~~pg~---~~~~~~~Yn~~~T~HG~~Miff~vmP~~~ggfgN~lvPl~lga~dmafPrlN~lsfW 104 (534)
T MTH00026 28 GAIGTAFSMLIRLELSSPGS---MLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFW 104 (534)
T ss_pred HHHHHHHHHHHHHHHhCccc---ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHH
Confidence 57899999999999999964 566788999999999999999999998765 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...+..++..|.+.++++++|||.|||||+..++++.++|++++|+++.++||+++++|+++|+.|+|+|||+++|+|+
T Consensus 105 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~~d~~i~~l~l~gvsSil~~iNfi~Ti~~~r~~gm~~~~~pl 184 (534)
T MTH00026 105 LLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPL 184 (534)
T ss_pred HHHHHHHHHHHHhccccCcCCCCeecCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeCH
Confidence 99999999999999988899999999999976677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc-
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS- 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~- 239 (585)
++|+.++|++++++++|+++++++|++.||+++++||+|.+||||+|||||||+|||||||++++|++|++||++|+++
T Consensus 185 f~w~~~~ts~l~l~a~Pvl~~~~~mll~dr~~~t~Ff~p~~gGdp~L~qhLFWffGHPeVYi~ilPa~g~v~~i~~~~s~ 264 (534)
T MTH00026 185 FVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISQILSLFSY 264 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCCchhhhhhhhhccCceeeeeccCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--ccccchhHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG--RIRFEVPILWT 317 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g--~i~~~~p~lf~ 317 (585)
||++|+|+.+++|+.+++++|+.||+||||++|++.+.|.+|+++|++|++||++|+|||++|++++ |+++++|++|+
T Consensus 265 ~~~~f~~~~~i~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~T~~IavPtgikvF~wl~Tl~g~~~~l~~~~p~~~~ 344 (534)
T MTH00026 265 KKQIFGYLGMVYAMLAIGVLGFIVWAHHMYVVGMDVDTRAYFTAATMIIAVPTGIKIFSWLATVSGSGRNLIFTTPMAWA 344 (534)
T ss_pred CchhhhhHHHHHHHHHHHHHeeeecccceeecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCcCCCCCchHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999997 68899999999
Q ss_pred HHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHH
Q psy2379 318 IGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGF 397 (585)
Q Consensus 318 l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~ 397 (585)
++++++|++||+||+++|+.++|.++|||||||||||+++.++++++++|++|||+||++||+++|+++|+|||++++|+
T Consensus 345 l~fi~~F~~GG~tGv~la~~~~d~~lHdT~~VVaHFH~vl~~g~vf~~~a~~yy~~P~~tGr~~~~~l~~~hfwl~~iG~ 424 (534)
T MTH00026 345 LGFIFLFTIGGLTGIVLSNSSLDILLHDTYYVVAHFHFVLSMGAVFAIFGGFYLWFGKITGYAYKDIYGLIHFWLMFIGV 424 (534)
T ss_pred HHHHHHHHHhccchhhhcchhhHHHhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccc----------ccCCCCC
Q psy2379 398 YVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLI----------DITGDPW 467 (585)
Q Consensus 398 ~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~----------~~~~~PW 467 (585)
+++|+|||++|++|||||++||+| +|+++|+++|+|++++.+|+++|++++++|++++|+.. ....|||
T Consensus 425 ~l~f~p~h~~G~~GmPRR~~~Yp~-~~~~~N~vsSiGs~i~~i~~llFl~~l~eS~~~~r~~~~~~~~~~~~~~~~~np~ 503 (534)
T MTH00026 425 NITFFPQHFLGLAGLPRRYADYPD-NFEDFNQISSFGSIISIIAVIWFIVVIFDAYYREEPFDINIMAKGPLIPFSCQPA 503 (534)
T ss_pred HHHHHHHHHhhcCCcCcccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccCCCC
Confidence 999999999999999999999976 89999999999999999999999999999998877531 1234899
Q ss_pred CCCccccccCCCCCCCCCCcCcccc
Q psy2379 468 NGRTLEWSTSSPPPVYNFAFIPLIH 492 (585)
Q Consensus 468 ~~~tLEW~~~sPPp~~nf~~~P~V~ 492 (585)
+++|+||+++||||+|||+|+|.+.
T Consensus 504 ~~~slEW~~~sPpp~hnf~e~P~v~ 528 (534)
T MTH00026 504 HFDTLEWSLTSPPEHHTYNELPYIV 528 (534)
T ss_pred CCCCcccCCCCCCCccCCCCCceec
Confidence 9999999999999999999999876
No 19
>MTH00079 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=1.7e-129 Score=1065.43 Aligned_cols=478 Identities=35% Similarity=0.717 Sum_probs=462.1
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. .+.+++.|||++|+||++|+|++++|+.+ |++||++|+|+|+||++|||+|++|||
T Consensus 28 ~~~G~~~sl~iR~eL~~pg~---~~~~~~~Yn~~~T~HG~~Miff~vmp~~iggfgn~lvPl~lGa~dmafPrln~~sfW 104 (508)
T MTH00079 28 GMVGTSLSLIIRLELSKPGL---LLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFPRLNNLSFW 104 (508)
T ss_pred HHHHHHHHHHHHHHHhCCCc---cCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhhHHHH
Confidence 57899999999999999964 56778999999999999999999999865 599999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+...|.+++..|++.++++++|||.|||||. .++++.++|+++++++++++||+++++|+++|+.|+|+|||+.+|+|+
T Consensus 105 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~-~~~~~~~~d~~i~~l~l~gvsSil~~infi~Ti~~~R~~gm~~~~~pl 183 (508)
T MTH00079 105 LLPTSLFLILDSCFVDMGPGTSWTVYPPLST-LGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISLEHMSL 183 (508)
T ss_pred HHhHHHHHHHHHhhcCcCccCCeeECCcccc-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCH
Confidence 9999999999999998889999999999995 356788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc-
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS- 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~- 239 (585)
++|+.++|+++.++++|+++++++++++||++|++||||..||||++||||||+|||||||++++|++|++||++|+++
T Consensus 184 f~w~~~~T~~l~l~a~PvLa~a~~mll~dr~~gt~ff~p~~ggdp~L~qhLFWffGHPeVYi~ilPa~g~~~~ii~~~s~ 263 (508)
T MTH00079 184 FVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSTGGNPLLYQHLFWFFGHPEVYILILPAFGIISQSTLYLTG 263 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCchHHHHHHHHhcCceeeeeHHhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|||+|||+.+++++.+++++|+.||+||||++|+|.+.|.+|+++|++||+||++|+|||++|+++||+++++|++|+++
T Consensus 264 r~~~fg~~~mv~a~~~i~~l~~~Vw~HHmft~G~~~~~~~~f~~~T~~IavPt~ikvf~w~atl~~g~~~~~~~~~~~~~ 343 (508)
T MTH00079 264 KKEVFGSLGMVYAILSIGLIGCVVWAHHMYTVGMDLDSRAYFTAATMVIAVPTGVKVFSWLATLFGMKMKFQPLLLWVLG 343 (508)
T ss_pred CccccchHHHHHHHHHHHHHhhhccccceecccCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++++|++||+||+++|+.++|.++|||||||||||+++.+|+++++++|+|||+||++||++||+++|+|||++++|+++
T Consensus 344 fi~~F~~GG~tGvila~~~~d~~~HdTy~VvaHFH~vl~~g~v~~~~~g~~yw~P~~tG~~~~~~l~~~~fw~~~iG~~~ 423 (508)
T MTH00079 344 FIFLFTIGGLTGVILSNSSLDIILHDTYYVVSHFHYVLSLGAVFGIFTGISLWWPFMTGIVYDKLMMSAVFFLMFVGVNL 423 (508)
T ss_pred HHHHHHHhhhhhhhhcchhhhhhhcccceeechHHHHHHhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| +|+++|+++++|++++.+|+++|++|+++|+++|||. ..++|+++|+||.+++|
T Consensus 424 ~f~p~h~~Gl~GmPRR~~~y~~-~~~~~n~~ssiGa~i~~~s~llfi~~l~~Sl~~gr~~---~~~~~~~sslEW~~~~P 499 (508)
T MTH00079 424 TFFPLHFAGLHGMPRKYLDYPD-VYSVWNVISSYGSMISVFALFLFIYVLLESFFSYRLV---LHDNYINSSPEYSLSSY 499 (508)
T ss_pred HHHHHHHHhhhccccccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC---CCCCCCCCCchhccCCC
Confidence 9999999999999999999976 7999999999999999999999999999999988765 34788889999999999
Q ss_pred CCCCCCCc
Q psy2379 480 PPVYNFAF 487 (585)
Q Consensus 480 Pp~~nf~~ 487 (585)
|.+|+|+|
T Consensus 500 p~~Hs~~e 507 (508)
T MTH00079 500 VFGHSYQS 507 (508)
T ss_pred CccccCCC
Confidence 99999987
No 20
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=100.00 E-value=9.3e-123 Score=1022.28 Aligned_cols=483 Identities=47% Similarity=0.927 Sum_probs=469.5
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|+++|.||..|+. .+.++++|||++|+||++|+|++++|...|++||++|+++|+||+++||+|++|||+
T Consensus 22 ~~~G~~~gl~~r~~L~~p~~---~~~~~~~y~~~~T~Hg~~mif~~~~p~~~g~~~~lvp~~lg~~dl~~prln~~sfwl 98 (506)
T TIGR02891 22 FLVGGVLALLMRAQLATPGN---TFMDAETYNQLFTMHGTIMIFLFAVPILAGFGNYLLPLMIGARDMAFPRLNAFSYWL 98 (506)
T ss_pred HHHHHHHHHHHHHHHhCCcc---cCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhHHHHHHHH
Confidence 68999999999999999974 456788999999999999999999997778999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIF 161 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf 161 (585)
+++|.+++.+|++.|+++++|||.||||++.+++|+.++|.+++++++.++||++.++|++.|+.|+|++|++.+|+|++
T Consensus 99 ~~~~~~l~~~s~~~g~~~~~gwT~ypPls~~~~~~~~~~~~~~~~l~l~gv~s~l~~in~i~Ti~~~r~~~~~~~~~pl~ 178 (506)
T TIGR02891 99 YLFGGLLLLASFFTGGAPDTGWTMYPPLSSLSGSPGVGVDLWLLGLHLLGISSILGAVNFIVTILKMRAPGMTLMRMPLF 178 (506)
T ss_pred HHHHHHHHHHHhccCCCcCCCCeeCCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHH
Confidence 99999999999999988899999999999877888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCC
Q psy2379 162 TWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241 (585)
Q Consensus 162 ~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~k 241 (585)
+|+.++|++++++++|+++++++++++||++|++||+|.+||||++|||+||+|||||||++++|++|++||++||++||
T Consensus 179 vw~~~~t~~l~~~~~p~l~~~~~~~~~~~~~~~~~f~~~~ggd~~l~~~lfWffGHp~Vy~~ilp~~g~~y~ilp~~~~~ 258 (506)
T TIGR02891 179 VWGILVTSILILLAFPVLIAALILLLLDRLFGTHFFDPARGGDPLLWQHLFWFFGHPEVYIIFLPAFGIISEILPTFARK 258 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCeehhhhhhhhcccccchhhhhhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHHh
Q psy2379 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFM 321 (585)
Q Consensus 242 plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i 321 (585)
|+||||.+++|+++++++|+.||.|||++.|+|++.|.+++++|+++++|+++|+|||+.|++++|+|+++|++|+++++
T Consensus 259 ~~~s~~~~~~a~~~i~~l~~~vw~HH~~~~g~~~~~~~~f~~~T~~i~vP~~~~~f~~~~tl~~~~~~~~~~~~~~~~~i 338 (506)
T TIGR02891 259 PIFGYRAMVYATVAIGFLSFGVWAHHMFTTGMPPLALAFFSAATMLIAVPTGVKVFNWIATLWGGSIRFTTPMLFALGFI 338 (506)
T ss_pred cchhhHHHHHHHHHHHHHheeecccceecCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHh
Q psy2379 322 ITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAF 401 (585)
Q Consensus 322 ~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f 401 (585)
++|++||+||+++|++++|.++|||||||||||+++.++++++++|++|||+||++||++|||++|+|||++++|+++++
T Consensus 339 ~~f~~gg~~G~~~a~~~vn~~~H~T~~VvaHfH~~~~~~~~~~~~~~~y~~~P~~~g~~~~~~l~~~~fwl~~iG~~~~~ 418 (506)
T TIGR02891 339 FLFVIGGLTGVMLASVPLDWQLHDTYFVVAHFHYVLVGGSVFAIFAAIYYWFPKVTGRMYNERLGRWHFWLTFVGFNLTF 418 (506)
T ss_pred HHHhhhhcchHhhhhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCcccccccccchh--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 402 MPLYILGFMGVTRRMSHFEDIS--LQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 402 ~pm~~~Gl~GmpRR~~~y~~~~--~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|||++|++|||||+++|+| + ++++|.++++|++++.+|+++|++|+++|+++|||. .+|||+++|+||.+++|
T Consensus 419 ~~m~~~Gl~G~pRR~~~~~~-~~~~~~~~~~~siGg~i~~~g~llfi~nl~~sl~~~r~~---~~~~~~~~slEW~~~~P 494 (506)
T TIGR02891 419 FPMHLLGLLGMPRRYYTYPP-QMGFATLNLISTIGAFILAAGFLLFLWNLIWSLRKGPKA---GANPWGATTLEWTTSSP 494 (506)
T ss_pred HHHHHHHhcccccCCcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---CCCCCCCCCcccCCCCC
Confidence 99999999999999999976 5 999999999999999999999999999999888754 35999999999999999
Q ss_pred CCCCCCCcCccc
Q psy2379 480 PPVYNFAFIPLI 491 (585)
Q Consensus 480 Pp~~nf~~~P~V 491 (585)
||+|||+|+|+|
T Consensus 495 p~~h~f~e~p~~ 506 (506)
T TIGR02891 495 PPAHNFESLPVV 506 (506)
T ss_pred CcccCCCCCCCC
Confidence 999999999976
No 21
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=100.00 E-value=2e-122 Score=1017.40 Aligned_cols=479 Identities=63% Similarity=1.150 Sum_probs=465.3
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|+++|.||..|+. .+.++++|||++|+||++|+|++++|.+.|++||++|+++|+||+++||+|++|||+
T Consensus 22 ~~iG~~~~lliR~~L~~p~~---~~~~~~~Y~~~~T~Hg~~mif~~~~p~~~gf~~ylvp~~lg~~dl~~prln~~sfWl 98 (501)
T cd01662 22 FLRGGVDALLMRTQLALPGN---DFLSPEHYNQIFTMHGTIMIFLFAMPLVFGLMNYLVPLQIGARDVAFPRLNALSFWL 98 (501)
T ss_pred HHHHHHHHHHHHHHHhCcCc---CCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence 68999999999999999974 456888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIF 161 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf 161 (585)
+++|.+++..|++.|+++++|||.|||||+.+++++.++|++++++++.++|++++++|++.|+.|||+||++++|+|++
T Consensus 99 ~~~~~~l~~~s~~~g~~~~~gWT~YpPLs~~~~~~~~~~~~~~~~l~l~gv~sil~~in~i~Ti~~~r~~g~~~~~~pl~ 178 (501)
T cd01662 99 FLFGGLLLNASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPIF 178 (501)
T ss_pred HHHHHHHHHHHHhcCCCccCCceeCCCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCHH
Confidence 99999999999999998899999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCC
Q psy2379 162 TWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241 (585)
Q Consensus 162 ~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~k 241 (585)
+|+.++|+++++.++|+++++++++++||++|++||++..|+||++|||+||+|||||||++++|++|++||++||++||
T Consensus 179 ~w~~~~t~~l~~~~~p~la~~~~~~~~d~~~g~~ff~~~~g~dp~l~q~lfWffGHp~Vyi~ilp~~g~~y~ilp~~~~~ 258 (501)
T cd01662 179 TWTTLVTSILILFAFPVLTAALALLELDRYFGTHFFTNALGGNPMLWQHLFWIFGHPEVYILILPAFGIFSEIVPTFSRK 258 (501)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHcCCEecCcCCCccHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHHh
Q psy2379 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFM 321 (585)
Q Consensus 242 plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i 321 (585)
|+||||.+++|+++++++|+.||+|||+++|+|++.|.+++++|+++++||++|+|||+.|+++||+|+++|++|+++++
T Consensus 259 p~~s~~~~~~a~~~i~~~~~~v~~HHm~~~g~~~~~~~~~~~~T~~i~vPs~~~~fnwl~tl~~~~~~~~~~~~~~~~~i 338 (501)
T cd01662 259 PLFGYRSMVYATVAIGFLSFGVWVHHMFTTGAGALVNAFFSIATMIIAVPTGVKIFNWLFTMWRGRIRFETPMLWAIGFL 338 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhhccccceecCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCCcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHh
Q psy2379 322 ITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAF 401 (585)
Q Consensus 322 ~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f 401 (585)
+.|++||+||+++|++++|..+|||||||||||+++.++++++.+|++|||+||++||++|||++|+|||++++|+++++
T Consensus 339 ~~f~~gG~~G~~~a~~~~n~~~H~T~~VvaHfH~~l~g~~~~~~~~~~yy~~P~l~gr~~~~~l~~~~fwl~~iG~~~~~ 418 (501)
T cd01662 339 VTFVIGGLTGVMLASPPADFQVHDTYFVVAHFHYVLIGGVVFPLFAGFYYWFPKMFGRMLNERLGKWSFWLWFIGFNLTF 418 (501)
T ss_pred HHHHHHhcchHhhccHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCccccccccc-chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCCC
Q psy2379 402 MPLYILGFMGVTRRMSHFE-DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480 (585)
Q Consensus 402 ~pm~~~Gl~GmpRR~~~y~-~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sPP 480 (585)
+|||++|++|||||+++|+ ++++++||.++++|++++.+|+++|++|+++|+++||+ +...|||+++|+||++++||
T Consensus 419 ~~~~~~G~~G~pRR~~~y~~~~~~~~~~~i~sigg~i~~~g~llf~~nl~~s~~~~~~--~~~~~~w~~~~lew~~~~Pp 496 (501)
T cd01662 419 FPMHILGLMGMPRRVYTYLPGPGWDPLNLISTIGAFLIAAGVLLFLINVIVSIRKGKR--DATGDPWGARTLEWATSSPP 496 (501)
T ss_pred HHHHhcccchhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--cCCCCCCCCCCcccCCCCCC
Confidence 9999999999999999997 35799999999999999999999999999999988773 22459999999999999999
Q ss_pred CCCCC
Q psy2379 481 PVYNF 485 (585)
Q Consensus 481 p~~nf 485 (585)
|+|||
T Consensus 497 ~~h~~ 501 (501)
T cd01662 497 PAYNF 501 (501)
T ss_pred CccCC
Confidence 99997
No 22
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=100.00 E-value=2.7e-120 Score=994.64 Aligned_cols=468 Identities=43% Similarity=0.831 Sum_probs=451.9
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCccccchhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLV-TGIINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~-~g~~ny~vPl~igard~a~Prln~~sf 79 (585)
++++|+++|+++|.||..|+. .+.++++|||++|+||++|+|++++|+. .|++||++|+++|+||+++||+|++|+
T Consensus 17 ~~~iG~~~~ll~r~~L~~p~~---~~~~~~~y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~ 93 (488)
T cd01663 17 SGLVGTSLSLLIRLELSQPGS---QLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSF 93 (488)
T ss_pred HHHHHHHHHHHHHhcccCCCc---cCCCHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHH
Confidence 368999999999999999974 4568889999999999999999999986 679999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 80 WMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
|++++|.+++..|++.++++++|||+||||++.+++++.++|.+++++++.++||+++++|+++|+.|+|+||++++|+|
T Consensus 94 wl~~~g~~l~~~s~~~~~~~~~gwT~YpPLs~~~~~~~~~~~~~i~~l~~~gv~s~l~~~n~i~Ti~~~r~~~~~~~~~p 173 (488)
T cd01663 94 WLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMP 173 (488)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCceeCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhh
Confidence 99999999999999996678999999999998878888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+++|+.++|++++++++|++++++.++++||++|++||++.+||||++||||||+|||||||++++|++|++||++||++
T Consensus 174 l~~w~~~~t~~l~~~~~p~l~~~~~~ll~d~~~~~~ff~~~~ggd~~l~q~lfWffGHp~Vyi~ilPa~g~~y~iip~~~ 253 (488)
T cd01663 174 LFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIISTFS 253 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcCeeeeeeeheecccccceehhhhhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH
Q psy2379 240 -SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI 318 (585)
Q Consensus 240 -~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l 318 (585)
|||+|||+.+++|+++++++++.||+|||+++|+|++.|.++++.|+++++||++|+|||++|++++|+|+++|++|++
T Consensus 254 g~~pi~~~~~~i~a~~~i~~~~~~vw~HHm~~~g~~~~~~~~~~~~T~~i~vPs~i~~fn~~~Tl~~~~~~~~~p~~f~~ 333 (488)
T cd01663 254 GKKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKVFSWLATMWGGSIKFETPMLWAL 333 (488)
T ss_pred CCCcccchHHHHHHHHHHHHHhhhccccceecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+++++|.+||+||+++|++++|.++|||||||||||+++.++++++++|++|||+||++||++|||++|+|||++++|++
T Consensus 334 ~~~~~f~~gg~tGi~~a~~~~d~~~H~T~~VvgHfH~~~~~~~~~~~~~~~y~~~P~~~gr~~~~~l~~~~fwl~~iG~~ 413 (488)
T cd01663 334 GFIFLFTIGGLTGVVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAIFAGFYYWFPKITGLSYNETLGKIHFWLMFIGVN 413 (488)
T ss_pred HHHHHHHhhccchHHhhhHHHHHHHhccccccchhhhhhhHhHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCC-CCccccc
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWN-GRTLEWS 475 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~-~~tLEW~ 475 (585)
++|+|||++|++|||||+.||++ .+++||+++++|++++.+|+++|++|+++|+++|||.. +|||+ ++|+||+
T Consensus 414 ~~f~~m~~~Gl~G~pRR~~~y~~-~~~~~n~issiG~~i~~~g~llf~~nl~~sl~~gr~~~---~~~~~~~~slEW~ 487 (488)
T cd01663 414 LTFFPQHFLGLAGMPRRYPDYPD-AYAGWNMISSIGSLISFVSVLLFLFIVWESFVSGRKVI---FNVGEGSTSLEWT 487 (488)
T ss_pred HHHHHHhhhcccccccccccCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCCCCCCCcccc
Confidence 99999999999999999999976 79999999999999999999999999999999887653 36775 7899996
No 23
>cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from
Probab=100.00 E-value=1.5e-97 Score=815.70 Aligned_cols=447 Identities=48% Similarity=0.937 Sum_probs=431.1
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|+++|+|++.|+. .+.+++.|||.+|.||++|+|++++|+.+|..++.+|+++|+||+++||+|+.++|+
T Consensus 16 ~~~g~~~~ll~r~~~~~p~~---~~~~~~~Y~~~~t~Hg~~mi~~~~~~~~~gg~~~~~~~~~g~~~l~~Prln~~~~~~ 92 (463)
T cd00919 16 LLLGGLLALLIRLELATPGS---LFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPPLIGARDLAFPRLNNLSFWL 92 (463)
T ss_pred HHHHHHHHHHHHHHHcCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHH
Confidence 57899999999999999964 467889999999999999999999999998555544444999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIF 161 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf 161 (585)
+..|.++...|++.|..+++|||.|||++..++.++.+.|.+++++++.++|++++++|++.|+.++|+++++.+|+|++
T Consensus 93 ~~~~~~l~~~s~~~g~~~~~gwt~Y~Pl~~~~~~~~~~~~~~~~gl~l~~v~sll~~~n~i~t~~~~r~~~~~~~~lpl~ 172 (463)
T cd00919 93 FPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGMTLDKMPLF 172 (463)
T ss_pred HHHHHHHHHHHHHhccCccCCeeEccCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHH
Confidence 99999999999999977899999999999877777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCC
Q psy2379 162 TWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241 (585)
Q Consensus 162 ~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~k 241 (585)
+|+.++|+++.+++.|+++.+.+++..||+++++||++..++||++|||+||+|||||||++++|+++++||++|+.+||
T Consensus 173 ~w~~~~t~il~~l~~p~l~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~lfW~fgHp~V~~~i~p~~~~~y~~ip~~~~~ 252 (463)
T cd00919 173 VWSVLVTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDPVLYQHLFWFFGHPEVYILILPAFGAISEIIPTFSGK 252 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCcCcchhhHHHHHhcCCeEEeeHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHHh
Q psy2379 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFM 321 (585)
Q Consensus 242 plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i 321 (585)
|+||||.+++++++++++|+.+|.|||+++|.|.+.|.+++++|+++++|+++|+|||+.|++++|.+.|++++|.++++
T Consensus 253 ~i~s~~~~~~a~~~~~~~~~~v~~HHl~~~~~~~~~~~~~~~~t~~i~vP~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 332 (463)
T cd00919 253 PLFGYKLMVYAFLAIGFLSFLVWAHHMFTVGLPVDTRAYFTAATMIIAVPTGIKVFNWLATLWGGRIRFDPPMLFALGFL 332 (463)
T ss_pred cccccHHHHHHHHHHHHHHccccccceeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHh
Q psy2379 322 ITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAF 401 (585)
Q Consensus 322 ~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f 401 (585)
+.|++||+||++++.+++|..+|||+|||||||+++.++++++.+|++|||+||++||++|||++|+|||++++|+++++
T Consensus 333 ~~f~~gg~~G~~~~~~~~n~~~H~T~~vvaHfH~~l~g~~~~~~~g~~y~~~p~~~g~~~~~~l~~~~fwl~~iG~~~~~ 412 (463)
T cd00919 333 FLFTIGGLTGVVLANVPLDIVLHDTYYVVAHFHYVLSGGVVFAIFAGLYYWFPKMTGRMLSEKLGKIHFWLWFIGFNLTF 412 (463)
T ss_pred HHHHHHhhhHHhhccchhhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2379 402 MPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVS 452 (585)
Q Consensus 402 ~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~S 452 (585)
+||+++|++|+|||+++|++ ++++++.++++|+.++.+|+++|++|+++|
T Consensus 413 ~~~~~~G~~G~~rr~~~~~~-~~~~~~~~~~~g~~~~~~g~~~f~~~~~~s 462 (463)
T cd00919 413 FPMHFLGLLGMPRRYADYPD-GFAPWNFISSVGAFILGLGLLLFLGNLFLS 462 (463)
T ss_pred HHHHhcccCCCCccCccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999975 899999999999999999999999999987
No 24
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=100.00 E-value=1.6e-96 Score=806.08 Aligned_cols=433 Identities=21% Similarity=0.371 Sum_probs=395.5
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|+++|+|+. +.. +.+.+++.|||++|+||++|+|++++|+..|++||++|+ +|+||+++||+|++|+|+
T Consensus 17 l~ig~~~gl~~~l~r~-~~~--~~~~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~y~vp~-~~~~~~~~prl~~~s~wl 92 (473)
T cd01660 17 LLLGGLFGLLQVLVRT-GVF--PLPSSGILYYQGLTLHGVLLAIVFTTFFIMGFFYAIVAR-ALLRSLFNRRLAWAGFWL 92 (473)
T ss_pred HHHHHHHHHHHHHHhc-ccc--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCcHHHHHHHHHH
Confidence 6899999999999864 211 012267899999999999999999999999999999999 999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIF 161 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf 161 (585)
+++|.+++..|++.|+ +++|||+|||++.+ | .|..++.++++|+++.++|+++|+.++|+++ +.+|+|++
T Consensus 93 ~~~g~~l~~~s~~~g~-~~~~wt~Y~PL~~~---~-----~~~~g~~l~~~~s~l~~in~~~t~~~~~~~~-~~~~~pl~ 162 (473)
T cd01660 93 MVIGTVMAAVPILLGQ-ASVLYTFYPPLQAH---P-----LFYIGAALVVVGSWISGFAMFVTLWRWKKAN-PGKKVPLA 162 (473)
T ss_pred HHHHHHHHHHHHhcCC-CCCCceeCcCcccc---c-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcCCHH
Confidence 9999999999998886 68899999999842 2 4566899999999999999999976554443 34699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCC
Q psy2379 162 TWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241 (585)
Q Consensus 162 ~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~k 241 (585)
+|+.++++++.+++.|++..+.+++.+||+++. ..|+||++|||+||+|||||||++++|++|++||++|+++||
T Consensus 163 ~w~~~~~~il~~~~~~~v~~~~~~~~l~~~~~~-----~~g~d~~l~q~lfWffGHp~Vyi~ilp~~g~~y~i~p~~~~~ 237 (473)
T cd01660 163 TFMVVTTMILWLVASLGVALEVLFQLLPWSLGL-----VDTVDVLLSRTLFWWFGHPLVYFWLLPAYIAWYTILPKIAGG 237 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHHHcCC
Confidence 999999999999888877777787888988752 457899999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhHhcccccccc-CCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--------------
Q psy2379 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTM-GSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG-------------- 306 (585)
Q Consensus 242 plfsy~~~v~a~~~i~~ls~~vw~HHmf~~-g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g-------------- 306 (585)
|+||||.+++++++++++|..||.|||+++ |.|++.+.+++++|+++++|+++|+|||+.|++++
T Consensus 238 ~~~s~~~~~~a~~~~~~~~~~v~~HHm~~~pg~~~~~~~~~~~~t~~i~iP~~v~vfn~~~tl~~~~~~~~~~~~~~w~~ 317 (473)
T cd01660 238 KLFSDPLARLAFILFLLFSTPVGFHHQFADPGIGPGWKFIHMVLTFMVALPSLLTAFTVFASLEIAGRLRGGKGLFGWIR 317 (473)
T ss_pred CccchHHHHHHHHHHHHHHhhcccchhcCCCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccCCcccccccc
Confidence 999999999999999999999999999999 79999999999999999999999999999999973
Q ss_pred ccccchhHHHHHH-HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccC-Cch
Q psy2379 307 RIRFEVPILWTIG-FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKL-EPF 384 (585)
Q Consensus 307 ~i~~~~p~lf~l~-~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~-~~~ 384 (585)
|+++++|+++.+. ++..|++||+||+++|++++|.++|||||||||||+++.++++++++|++|||+||++||++ |||
T Consensus 318 ~~~~~~~~~~~~~~~i~~F~~GG~tGv~la~~~~n~~~H~T~~VvaHfH~~l~g~~~~~~~g~~Y~~~P~l~gr~~~~~~ 397 (473)
T cd01660 318 ALPWGDPMFLALFLAMLMFIPGGAGGIINASYQLNYVVHNTAWVPGHFHLTVGGAVALTFMAVAYWLVPHLTGRELAAKR 397 (473)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcchHhhccccchhheeCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence 5778889887764 79999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhcccCCccccccc--ccc----hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2379 385 WGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSH--FED----ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSY 453 (585)
Q Consensus 385 l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~--y~~----~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl 453 (585)
++|+|||++++|++++++|||++|++|+|||+++ |+| +++++||.++++|++++.+|+++|++|+++|+
T Consensus 398 l~~~~fwl~~iG~~~~~~~m~~~G~~g~~RR~~~~~~~~~~~~~~~~~~~~~~~iGg~l~~~g~llf~~~l~~s~ 472 (473)
T cd01660 398 LALAQPWLWFVGMTIMSTAMHVAGLLGAPRRTAEAQYGGLPAAGEWAPYQQLMAIGGTILFVSGALFLYILFRTL 472 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceeccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999864 543 37899999999999999999999999999885
No 25
>PF00115 COX1: Cytochrome C and Quinol oxidase polypeptide I This family corresponds to chains a and n.; InterPro: IPR000883 Cytochrome c oxidase (1.9.3.1 from EC) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (1.10.3 from EC), is directly involved in the coupling between dioxygen reduction and proton pumping [, ]. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (CO I) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members [, , ]. In contrast to eukaryotes the respiratory chain of prokaryotes is branched to multiple terminal oxidases. The enzyme complexes vary in haem and copper composition, substrate type and substrate affinity. The different respiratory oxidases allow the cells to customize their respiratory systems according to a variety of environmental growth conditions []. It has been shown that eubacterial quinol oxidase was derived from cytochrome c oxidase in Gram-positive bacteria and that archaebacterial quinol oxidase has an independent origin. A considerable amount of evidence suggests that proteobacteria (Purple bacteria) acquired quinol oxidase through a lateral gene transfer from Gram-positive bacteria []. Nitric oxide reductase (NOR) (1.7.99.7 from EC) exists in denitrifying species of archae and eubacteria and is a heterodimer of cytochromes b and c. Phenazine methosulphate can act as acceptor.; GO: 0004129 cytochrome-c oxidase activity, 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0009060 aerobic respiration, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 3O0R_B 3FYI_C 2GSM_A 3FYE_C 3DTU_C 1M57_A 1M56_G 3ABK_N 2Y69_N 1V55_A ....
Probab=100.00 E-value=1.8e-95 Score=795.70 Aligned_cols=427 Identities=43% Similarity=0.862 Sum_probs=413.6
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcc-cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPE-HYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~-~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|.|++.| ++++++ .|||.+|.||++|+|++++|...|++||++|+++|+||+++||+|+++||
T Consensus 16 ~~vg~~~glli~~~l~~p-----~~l~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~y~~p~~~g~~d~~~prl~~~~fw 90 (447)
T PF00115_consen 16 LLVGGLLGLLIRLQLAFP-----NFLSPDIPYNQLRTVHGNLMIFWFAMPFIIGFGNYLIPRMIGARDLAFPRLNWLSFW 90 (447)
T ss_pred HHHHHHHHHHHHHHHhCC-----cCCCCCcceeeeehhhheeeeeeccCchHHHHHheechhhcCCCCchhhhhhhEEEe
Confidence 689999999999999888 467777 99999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccc-CCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 81 MTSGGAILVMISLFIGEF-ASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~-~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
++++|.++...|.+.|+. ++.|||+|||||..++ .+.|++++++.++++|+++.++|++.|+.|+|+|++++.|+|
T Consensus 91 l~~~~~~~~~~s~~~g~~~~~~~wt~ypPLs~~~~---~~~~~~~~~l~l~gv~~ll~~in~~~Ti~~~r~~~~~~~~~p 167 (447)
T PF00115_consen 91 LLPIGVVLALVSIFLGGGGPGVGWTFYPPLSSISY---GGHDFFILGLLLFGVGSLLGAINFIVTILKMRAPGMYLSRMP 167 (447)
T ss_pred ehhhHHHHHhhcccccccccccccccccccccccc---cccchhhhhhhhchhhHHHHhhHHhhhhcccccccCCCcccc
Confidence 999999999999999987 5899999999995433 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~ 239 (585)
+++|+.++|+++.+.++|++.++..++++||+++++|| ..++||+++||+||++||||||++++|++|++||++|+.+
T Consensus 168 lf~w~~~~t~~l~~~~~p~l~~~~~~~l~d~~~~~~ff--~~~~~~~~~~~lfW~~gH~~V~~~~~pa~gi~~~~l~~~~ 245 (447)
T PF00115_consen 168 LFVWAILATAILLLFSFPVLAAALLMLLLDRNFGTSFF--SPGGDPLLYQHLFWWFGHPEVYIWFLPAFGIIYYILPKFT 245 (447)
T ss_pred Hhhhhhhhhhhhhhhhccchhhhhheecccccceeeee--ecccccccchhhheeecchhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
+||++|||.++++++++.++|..+|.|||+++|+|++.+.++++.|+++++|+++|+|||+.|++++|+|+++|++|.++
T Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~v~~HH~~~~g~~~~~~~~~~~~t~~i~vP~~~~~f~~~~t~~~~~~~~~~~~~~~~~ 325 (447)
T PF00115_consen 246 GRPIFSYKWMILAFWLILVFGILVWAHHMFTTGLPPWWRAFGSVFTMLIAVPSGLKVFNWLATLRGGRLRWNPPFLFFLG 325 (447)
T ss_pred hcchhhhhHHHHHHHHHHhhhcccccceeeecccccceeeeecccchHHHHHHHHHHHHHHHHhhhcccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
+++.|+.||++|++++++++|.+.|||+|||||||+++.|+++++.+|++||++||++||++|||++|+|||++++|+++
T Consensus 326 ~~~~f~~gG~~G~~~~~~~~n~~~H~T~~vvaHfH~~l~g~~~~~~~g~~y~~~p~~~g~~~~~~l~~~~fw~~~iG~~~ 405 (447)
T PF00115_consen 326 FIFLFIIGGVTGILLASPSVNYYLHGTYWVVAHFHYALFGGVGFAFFGAIYYWLPKLTGRMYSEKLGKIHFWLYFIGFNL 405 (447)
T ss_pred cccccccccccchhcccccccccccccceeeceehhhHHhHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccc--cc-hhHHHHHHHHHhhhHHH
Q psy2379 400 AFMPLYILGFMGVTRRMSHF--ED-ISLQIWFQIAAFGTLLI 438 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y--~~-~~~~~~~~i~siGa~i~ 438 (585)
+++||+++|+.|+|||+.+| ++ +++++++.++++|++++
T Consensus 406 ~~~~~~~~G~~g~~rr~~~y~~~~~~~~~~~~~~~~~Gg~l~ 447 (447)
T PF00115_consen 406 MFFPMHFAGLLGMPRRYYDYWAPSVSAWIPYNWLRTIGGFLF 447 (447)
T ss_pred HHHHHHHHHhcCcchHhhccCCCcHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999 54 36999999999999873
No 26
>PRK14488 cbb3-type cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=5.2e-82 Score=692.01 Aligned_cols=424 Identities=17% Similarity=0.237 Sum_probs=364.9
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCc-ccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPP-EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~-~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|.|+..||. .+.++ +.|||++|+||++|+|++++|..+|++||++|+++|+|| ++||+|++++|
T Consensus 24 ~~~g~~~gll~~~~l~~P~~---~~~~~~~~fn~~rt~H~~~mif~~~~~~~~g~~~ylvP~~~g~~~-~~prL~~~~fw 99 (473)
T PRK14488 24 GIVGMLVGVLIAAQLAWPEL---NFDLPWLTFGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARL-FSDFLAWFTFW 99 (473)
T ss_pred HHHHHHHHHHHHHHHhCCCc---cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchhHHHHHHH
Confidence 57899999999999999974 45554 789999999999999999999999999999999999997 79999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+++++.++...|++.|..+ + ++|+|+ +...|++++++ .++.++|++.|+.|+|+|++ ..
T Consensus 100 l~~~~~~~~~~~~~~G~~~--~-~~y~~~-------~~~~~~~i~~~------~ll~~~n~~~Ti~~~r~~~l-----~~ 158 (473)
T PRK14488 100 GWQLVIVLAAITLPLGYTQ--S-KEYAEL-------EWPIDILITIV------WVAYAVVFFGTIAKRKEPHI-----YV 158 (473)
T ss_pred HHHHHHHHHHHHHhcCCcc--c-cccCCC-------chhHHHHHHHH------HHHHHHHHHHHHHHhcCCCc-----Ch
Confidence 9999999999999988744 3 567764 34678777544 45789999999999999874 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHH-HhhhhhHHHHHHHHhhhc
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVY-ILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vy-i~ilPa~gi~~~iip~~~ 239 (585)
|..+.++.+..+++..+.+ .+.++.+.++++....+|+|++ || |+||||||| ++++|++|++||++||++
T Consensus 159 --~~w~~~~~~~~~~~l~~~~---~~~~P~~~~~~~~~~~g~~~~~-~~---W~~gHp~V~~~l~~p~~g~~y~ilp~~a 229 (473)
T PRK14488 159 --ANWFYGAFILTIAMLHIVN---NLAVPVSLFKSYSAYSGVQDAM-VQ---WWYGHNAVGFFLTAGFLGMMYYFVPKQA 229 (473)
T ss_pred --HHHHHHHHHHHHHHHHHHh---hccccHHHhhccccccCCCCce-EE---eeeccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444443333221111 1112222334432224446665 66 999999995 777889999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--ccccchhHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG--RIRFEVPILWT 317 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g--~i~~~~p~lf~ 317 (585)
|||+|||+.++++++++.+++.++|.||||++|+|++.+.+++++|+++++|+++|+|||++|++++ ++|.++|++|.
T Consensus 230 ~r~l~s~~l~~~a~~~~~~~~v~~g~HH~f~~g~p~~~~~~~~~~S~li~vP~~~~~fn~~~Tl~~~~~~~~~~~~~~~~ 309 (473)
T PRK14488 230 GRPVYSYRLSIVHFWALIFLYIWAGPHHLHYTALPDWAQTLGMVFSLILLAPSWGGMINGLMTLSGAWHKLRTDPILRFL 309 (473)
T ss_pred CCCcchhhHHHHHHHHHHHHHHhccccceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 68999999999
Q ss_pred HHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc--CCchhhhHHHHHHHH
Q psy2379 318 IGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK--LEPFWGKCSFWFWLI 395 (585)
Q Consensus 318 l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~--~~~~l~~~~fwl~~i 395 (585)
+.++..|.+||++|++++.+++|.+.|||+||+||+|+++.|+++++++|++|||+||++||+ +|||++|+|||++++
T Consensus 310 ~~~~~~f~~gg~~G~~~a~~~vn~~~h~T~~v~aH~H~~l~g~~~~~~~g~~y~~~P~l~g~~~~~s~~L~~~~fwl~~i 389 (473)
T PRK14488 310 VVALAFYGMSTFEGPMMSIKTVNALSHYTDWTIGHVHSGALGWVGMISIGALYHLIPRLWGRERMYSLKLVNWHFWLATI 389 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 799999999999999
Q ss_pred HHHHHhhhhhhccc-CCccccccc-cc-------c--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccc
Q psy2379 396 GFYVAFMPLYILGF-MGVTRRMSH-FE-------D--ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTL 459 (585)
Q Consensus 396 G~~l~f~pm~~~Gl-~GmpRR~~~-y~-------~--~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~ 459 (585)
|++++++|||.+|+ ||||||..+ |+ + ..+++|+.++++|++++++|+++|++|+++|++++||.
T Consensus 390 G~~~~~~~l~~~Gl~qG~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~iGg~i~~~g~llf~~n~~~t~~~~~~~ 464 (473)
T PRK14488 390 GIVLYIASMWVAGIMQGLMWRAVDEDGTLTYSFVETVEAMHPYYVIRALGGLLFLSGMLIMAYNVWKTIRAGKAL 464 (473)
T ss_pred HHHHHHHHHHHHHHHccccceecccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999998 999977433 31 1 14789999999999999999999999999999887654
No 27
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=100.00 E-value=6.6e-81 Score=685.50 Aligned_cols=419 Identities=16% Similarity=0.242 Sum_probs=371.5
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCC-cccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLP-PEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~-~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|.|++.|+. .+.. ..+|||+||.||+.|+|+|+.++.+|++||++|+++|+| +++||+|++++|
T Consensus 58 ~lig~l~Gl~~a~~l~~P~~---~~~~~~~~f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~-l~~~~l~~~~~w 133 (493)
T cd01661 58 GLVGSLVGLIAALQLAEPDL---LFDLAWLSFGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRAR-LAGGNLAWFVFW 133 (493)
T ss_pred HHHHHHHHHHHHHHHhCCcc---ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCChhHHHHHHH
Confidence 68999999999999999973 2322 368999999999999999999999999999999999998 789999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
++++|.++...|++.| |+.+.|++ ++++.+|.++++..+ +.++|++.|+.|||+|+ ++.
T Consensus 134 ~~~~g~~l~~~~~~~G------~~~~~ey~----e~~~~i~l~l~v~~~------~~~~~~~~Ti~~~r~~~-----~~v 192 (493)
T cd01661 134 GYNLFIVLAATGYLLG------ITQGKEYA----EPEWYVDLWLTVVWV------AYLLPFLGTLLRRKEPH-----IYV 192 (493)
T ss_pred HHHHHHHHHHHHHHcc------cccccccc----ccchhHHHHHHHHHH------HHHHHHHHHHHHHcCCC-----ccH
Confidence 9999999999998864 55555553 456778877644322 34789999999999997 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhh-HHHHHHHHhhhc
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPV-FGIFSEVVSTFS 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa-~gi~~~iip~~~ 239 (585)
.+|. .++.++.++++.+.+. +...|+..++++|++..|+++ ++++|||||||||++++|+ +|++||++||++
T Consensus 193 ~~w~--~~a~~~~~~~l~~~~~--l~~~~~l~~~~~~~~~~G~~~---~~~~Ww~gH~~V~~~~~p~~lg~~y~~ipk~a 265 (493)
T cd01661 193 ANWY--YLAFIVTVAVLHIVNN--LAVPVSWFGSKSYSAHAGVQD---ATTQWWYGHNAVGFFLTAGFLAMMYYFLPKIA 265 (493)
T ss_pred HHHH--HHHHHHHHHHHHHHHH--HHHHHHHccccccCcccCCCc---eeeeeeccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555 4444444444444333 344488888999998888764 5678999999999999995 599999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--ccccchhHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG--RIRFEVPILWT 317 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g--~i~~~~p~lf~ 317 (585)
|||+||||++++++|+++++|..+|.|||+++|+|++.+.+++++|+++++|++++++||.+|++++ |+|.+++++|.
T Consensus 266 ~rpi~sy~l~~~~f~~l~~l~~~~g~HHl~~~~~p~~~~~l~~~~S~li~vPs~~~~~n~~~Tl~g~~~~~~~~~~~~f~ 345 (493)
T cd01661 266 ERPVYSYRLSIIGFWALAFLYIWAGPHHLHYTALPDWLQTLGMVFSVMLWMPSWAGMINGLLTLRGAWDKLRTDPTLRFM 345 (493)
T ss_pred CCCcchhHHHHHHHHHHHHHHhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred HHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc-CCchhhhHHHHHHHHH
Q psy2379 318 IGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK-LEPFWGKCSFWFWLIG 396 (585)
Q Consensus 318 l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~-~~~~l~~~~fwl~~iG 396 (585)
++++.+|.+||+||++++.+++|.+.|||+|||||+|+++.|++++..+|++||++||++||+ +|||++|+|||++++|
T Consensus 346 ~~~~~~~~~gg~~G~~~a~~~vn~~~H~T~~vvaH~H~~l~G~~~~~~~g~iY~~~P~l~gr~~~s~~L~~~hFWl~~iG 425 (493)
T cd01661 346 VVGGAFYGLSTFEGSFMAIRAVNSLSHYTDWTVGHVHLGALGWVGFITFGAIYFLVPRIWKREWPSPKLVEWHFWLATIG 425 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHhccceeehhhhhhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 6999999999999999
Q ss_pred HHHHhhhhhhccc-CCccccccc------ccc----hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2379 397 FYVAFMPLYILGF-MGVTRRMSH------FED----ISLQIWFQIAAFGTLLIAMGILSFIIQLIVS 452 (585)
Q Consensus 397 ~~l~f~pm~~~Gl-~GmpRR~~~------y~~----~~~~~~~~i~siGa~i~~~g~llfv~nl~~S 452 (585)
+++++++|+.+|+ ||+|||.++ |+. .+++|++.++++|+.++.+|.++|++|++++
T Consensus 426 ~~~~~~~l~~~G~~qG~~~r~~~~~~~l~~~~~~~~~~~~p~~~~r~igg~l~~~G~l~f~~n~~~t 492 (493)
T cd01661 426 IVIYFVAMWISGILQGLMWRDYDSDGFLVYSFIESVQATHPYYIARSVGGLLMLSGALVMAYNFWMT 492 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999876 542 2478999999999999999999999999976
No 28
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I. Gene symbols ccoN and fixN are synonymous.
Probab=100.00 E-value=9.5e-73 Score=615.73 Aligned_cols=433 Identities=18% Similarity=0.282 Sum_probs=367.2
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCC-CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGY-LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~-l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|++.|+++..|+..||.+-.+. .+..+|+|+|+.|.+.++|.|.....+|..+|++||.+|+| +..||+.++++|
T Consensus 19 ~~~~~~~G~~~a~~~~~P~~~l~~~~~~~~~fgr~R~~Htn~~i~~~~~~~~~g~~yy~~~r~~~~~-l~~~~la~~~~~ 97 (474)
T TIGR00780 19 GIVGMLVGVVLAFQLSFPALNLSDIAGEYGIFGRLRPLHTNAVIFAFGGGGLIATSYYVVQRTYHQR-LFGGIVGLFHFW 97 (474)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcchHHHHHHH
Confidence 4679999999999999997410011 23457999999999999999999999999999999999966 579999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+++++.++..++++.|..+ | ++|+|+. +..|..+ .++.++.++|++.|+.|||++. +++
T Consensus 98 ~~~~~~~~a~~~~~~G~~~--g-~eY~e~~-------~~~~~~i------~v~~l~~~~n~~~T~~~r~~~~-----~yv 156 (474)
T TIGR00780 98 GWQILIVLAVISLFAGLTQ--S-KEYAELE-------WPLDIIV------TVVWVLYGVVFFGTISKRKENH-----IYV 156 (474)
T ss_pred HHHHHHHHHHHHHhccCcc--C-cccccch-------HHHHHHH------HHHHHHHHHHHHHHHHHhcccc-----cHH
Confidence 9999999999999998854 3 7777772 3345544 2356678999999999987764 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-ceeeccCCC-CcchhhhHHHHHhhhhHHHHhhhh-hHHHHHHHHhh
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIG-THFFTNDLG-GNIMMYVNLIWIWGHPEVYILVLP-VFGIFSEVVST 237 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~-~~ff~~~~G-gdpll~q~LfW~fGHp~Vyi~ilP-a~gi~~~iip~ 237 (585)
..|...+. +++++++-... .+.++.+++ ++-+....| .|++ + +|+||||+||++++| ++|++||++||
T Consensus 157 ~~W~~~a~----~~~~~~l~~~~-~~~~p~~l~~~~~~~~~~G~~d~~-~---~Ww~gH~~V~~~l~~~~lg~~Yy~lpk 227 (474)
T TIGR00780 157 ANWFYIAF----IVGIAVLHIVN-NLSIPTYLVAWKSISMYSGSNDAM-I---QWWYGHNAVGFFLTAGFLGMMYYFLPK 227 (474)
T ss_pred HHHHHHHH----HHHHHHHHHhh-ccccchhhccccccccccCccCce-e---EEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765 33333332111 122233332 333333444 5544 3 499999999999986 67999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--ccccchhHH
Q psy2379 238 FSSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG--RIRFEVPIL 315 (585)
Q Consensus 238 ~~~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g--~i~~~~p~l 315 (585)
++|||+||||++++++|++.+++.++|.||++++|+|++.|.+++++|+++++|++++++||++|++++ ++|.|++.+
T Consensus 228 ~~~rpi~sy~l~~~~fw~l~~~~~~~g~HHl~~~g~P~~~~~i~~v~S~~~~vPs~~~~~n~~~Tl~g~~~~~r~~p~~~ 307 (474)
T TIGR00780 228 QAGRPVYSYKLSLFHFWALIFVYIWAGPHHLHYTALPDWVQTLGMVFSVILILPSWGGMINGLMTLSGAWDKLRTDPIIK 307 (474)
T ss_pred HcCCCccccHHHHHHHHHHHHHHHhccCccceeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 888888888
Q ss_pred HHHHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc--CCchhhhHHHHHH
Q psy2379 316 WTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK--LEPFWGKCSFWFW 393 (585)
Q Consensus 316 f~l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~--~~~~l~~~~fwl~ 393 (585)
|.+.++..|..||++|++++.+++|.+.|||+|++||+|+++.|++++..+|++||++||++||+ +|||++|+|||++
T Consensus 308 f~~~~~~~~~~gg~~G~~~a~~~vN~~~H~T~~vvaH~Hl~~~G~v~~~~~g~iY~~~P~l~gr~~~~s~~L~~~hFWl~ 387 (474)
T TIGR00780 308 FLVVASTFYGMSTFEGPMMSIKSVNALSHYTDWTIGHVHDGALGWVGFTTIGSMYYMTPRLFGRERIYSTRLVDFHFWIA 387 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhhhhHhCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred HHHHHHHhhhhhhccc-CC-cccccccccc---------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy2379 394 LIGFYVAFMPLYILGF-MG-VTRRMSHFED---------ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDI 462 (585)
Q Consensus 394 ~iG~~l~f~pm~~~Gl-~G-mpRR~~~y~~---------~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~ 462 (585)
++|+++++++|+++|+ || ||||+++|.+ ++++|++.++++|+.++.+|.++|++|+++++++||+..
T Consensus 388 ~iG~~l~~~~l~~~G~~QG~~~R~~~~~g~~~~~f~~~~~~~~p~~~~r~iGg~l~~~G~llf~~nl~~t~~~g~~~~-- 465 (474)
T TIGR00780 388 TIGIVLYFASMWIAGIMQGLMWRDVDQYGNLTYQFIDTVKVLIPYYVIRGVGGLLYLIGFIIMAYNIFMTITAGKKLE-- 465 (474)
T ss_pred HHHHHHHHHHHHHHHHHccccceeeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 9999999999999998 79 5888775431 247899999999999999999999999999999887643
Q ss_pred CCCCCC
Q psy2379 463 TGDPWN 468 (585)
Q Consensus 463 ~~~PW~ 468 (585)
+||-.
T Consensus 466 -~~p~~ 470 (474)
T TIGR00780 466 -REPNA 470 (474)
T ss_pred -CCccc
Confidence 36643
No 29
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=100.00 E-value=1.8e-65 Score=575.94 Aligned_cols=424 Identities=17% Similarity=0.268 Sum_probs=361.7
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|+++..|+..||.. .-.+.-+|+++|+.|.+.++|+|+..+.+|..+|++|+++++| +.++||.++.+|+
T Consensus 24 ~~vg~l~Gl~~a~~l~~Pd~~--~~~~~l~Fgr~R~vHtNavif~~~~~a~~g~~yy~vprl~~~~-l~s~~La~~~~~~ 100 (712)
T PRK14485 24 GIVGMLVGLLVALQLVFPNLN--FGISWLTFGRLRPLHTNAVIFAFVGNAIFAGVYYSTQRLLKAR-MFSDLLSKIHFWG 100 (712)
T ss_pred HHHHHHHHHHHHHHHhCCccc--CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHH
Confidence 567999999999999999741 1123467999999999999999999999999999999999997 5699999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQ-SPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~-~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+++++++..+++..|..++ .|| +-++..|..+ ++..++..+|++.|+.|||.++ ++.
T Consensus 101 ~~~~i~~~~i~l~~G~tqG-----------~EY~El~w~idi~i------~v~wl~~~~n~~~T~~kr~~~~-----~yv 158 (712)
T PRK14485 101 WQLIIVSAAITLPLGFTTS-----------KEYAELEWPIDIAI------ALIWVVFGVNFFGTLIKRRERH-----LYV 158 (712)
T ss_pred HHHHHHHHHHHHHcccccC-----------cchhhcccHHHHHH------HHHHHHHHHHHHHHHHhccccc-----chH
Confidence 9999999999999887543 333 2246666655 3455678999999999998764 588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHH-HHhhhhhHHHHHHHHhhhc
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEV-YILVLPVFGIFSEVVSTFS 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~V-yi~ilPa~gi~~~iip~~~ 239 (585)
..|..+++ +++++.+-.... +...-++..+ +....|.+.-++| ||+|||+| |++.+|++|++||++||++
T Consensus 159 ~~w~~~a~----~i~ia~lyi~~~-l~~p~~~~~~-~~~~~Gv~da~~~---WW~gH~~Ve~~l~~p~lgi~yyilPk~a 229 (712)
T PRK14485 159 AIWFYIAT----IVTVAVLHIVNS-LELPVSALKS-YSVYAGVQDALVQ---WWYGHNAVAFFLTTPFLGLMYYFVPKAA 229 (712)
T ss_pred HHHHHHHH----HHHHHHHHHHhh-cccccccccc-ceecccccchhhh---eehhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998877 334455432222 1111111111 1112455555554 99999999 6777799999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--ccccchhHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG--RIRFEVPILWT 317 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g--~i~~~~p~lf~ 317 (585)
|||+||||++++++|++++++.++|.|||+.+|+|++++.+++++|+++.+|++.+++|++.|++++ ++|.+++++|+
T Consensus 230 ~rpI~sy~Lsvi~Fw~L~~~~i~~G~HHly~tG~P~~~~~lg~vfS~l~vvPs~~~~~N~l~Tl~g~w~~~r~~p~l~F~ 309 (712)
T PRK14485 230 NRPVYSYRLSIIHFWSLIFIYIWAGPHHLLYTALPDWAQNLGVVFSVMLIAPSWGGMINGLLTLRGAWDKVRTDPVLKFF 309 (712)
T ss_pred CCCeehhhHHHHHHHHHHHHHHhcccccceeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 88999999999
Q ss_pred HHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc-CCchhhhHHHHHHHHH
Q psy2379 318 IGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK-LEPFWGKCSFWFWLIG 396 (585)
Q Consensus 318 l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~-~~~~l~~~~fwl~~iG 396 (585)
+.++..|.+||++|++++.+++|...|||+|++||+|+++.|+.+|..+|++||++||++||+ +|||++|+|||++++|
T Consensus 310 ~~gi~~f~~gg~~G~llal~~vN~~~H~T~wtvaH~Hlal~G~~~~~~fg~iYy~lPrL~gr~~~s~kL~~~hFWL~~IG 389 (712)
T PRK14485 310 VVAITFYGMATFEGPMLSLKNVNAIAHYTDWIIAHVHVGALGWNGFLTFGMLYWLLPRLFKTKLYSTKLANFHFWIGTLG 389 (712)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhHHHcCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976 6999999999999999
Q ss_pred HHHHhhhhhhccc-CCcccccc------ccc---c--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccc
Q psy2379 397 FYVAFMPLYILGF-MGVTRRMS------HFE---D--ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTL 459 (585)
Q Consensus 397 ~~l~f~pm~~~Gl-~GmpRR~~------~y~---~--~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~ 459 (585)
+++++++|+++|+ ||++||.. .|+ + ...+|++.++++|++++++|.++|++|+++++++|++.
T Consensus 390 ~~l~~~~m~iaGi~Qg~~~r~~~~~G~~~y~~f~~~~~~~~p~~~lR~iGg~l~~~G~llf~~nl~~t~~~g~~~ 464 (712)
T PRK14485 390 IILYALPMYVAGFTQGLMWKEFTPDGTLAYPNFLETVLAIRPMYWMRAIGGSLYLVGMIVMAYNIIKTVRAGSAV 464 (712)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999997 89987732 232 2 25789999999999999999999999999999888754
No 30
>COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-61 Score=494.59 Aligned_cols=426 Identities=19% Similarity=0.249 Sum_probs=372.5
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCC--cccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLP--PEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~--~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sf 79 (585)
.++|+..|++++.||+.|+. .+.. ..+|+|+|+.|.+..||.|...+++|..+|+++|.|++|.. --.+.++.|
T Consensus 27 givgmlvGv~iA~qL~~P~l---n~~~~~w~~FGRlRplHtnaVifafgg~al~ats~yVvqRt~k~rL~-~~~l~~f~f 102 (482)
T COG3278 27 GIVGMLVGVLIAAQLAWPDL---NFDPAPWLSFGRLRPLHTNAVIFAFGGNALIATSYYVVQRTCKARLF-GGNLAWFVF 102 (482)
T ss_pred HHHHHHHHHHHHHHHhcccc---ccCcccceeccccccceeceeeeeccccchhheeeeeeeehhcceec-cCchHHHHH
Confidence 57899999999999999985 2322 45799999999999999999999999999999999999964 568999999
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccch
Q psy2379 80 WMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMP 159 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~p 159 (585)
|.+++..++..+|++.|..++ .+..++++..|+++ .+...+.+++|+.|+.|||.|. ++
T Consensus 103 wgwq~~iV~a~~s~~~G~T~s----------kEyaE~eW~idi~~------~ivwv~y~i~f~gTi~~rk~~h-----iY 161 (482)
T COG3278 103 WGWQLFIVLAAISLPLGLTQS----------KEYAELEWPIDILL------TIVWVAYGIVFFGTILKRKEPH-----IY 161 (482)
T ss_pred HHHHHHHHHHHHHHhhccccc----------hhhccccchhHHHH------HHHHHHHHHHHHHHHHHhcCCe-----EE
Confidence 999999999999999998653 44567789999987 4556788999999999999995 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhh-HHHHHHHHhh
Q psy2379 160 IFTWTALCTNILIVAAFPVLTSVLFLSTLDR-YIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPV-FGIFSEVVST 237 (585)
Q Consensus 160 lf~w~~l~t~il~l~a~p~l~~a~~~l~~dr-~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa-~gi~~~iip~ 237 (585)
+..|...++ ++.++.+-.--- +.++- .++.+-|+...|.+..+-| ||||||.|.+..+++ +|++||++||
T Consensus 162 VanWfy~af----i~~iamLhivNn-~~vPv~~~~~kSys~ysGv~DA~vQ---WWyGHnaVgFflT~gfL~mmYYFvPK 233 (482)
T COG3278 162 VANWFYGAF----IVTIAMLHIVNN-LSVPVSFFGWKSYSAYSGVQDALVQ---WWYGHNAVGFFLTAGFLGMMYYFVPK 233 (482)
T ss_pred EEhHHHHHH----HHHHHHHHHHhc-ccCceEEecccceehhcchHHHHHH---HHhccceeehhhhHhHHHHhhhcchh
Confidence 778877776 222222211110 01111 2234445555676666666 999999999999995 5999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCC--ccccchhHH
Q psy2379 238 FSSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRG--RIRFEVPIL 315 (585)
Q Consensus 238 ~~~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g--~i~~~~p~l 315 (585)
.++||+||||+++++||++.+++.+++.||+-++.+|+|.|+..++.|++.-.|++....|-+.||.|. |+|.|+..+
T Consensus 234 qa~rPiySYrLSivhFWalif~YiwAGpHHLhytalPdW~qtLgmvfS~mL~~PswggmINglmTlsGaw~klr~dPilr 313 (482)
T COG3278 234 QAGRPIYSYRLSIVHFWALIFLYIWAGPHHLHYTALPDWAQTLGMVFSLMLLAPSWGGMINGLMTLSGAWHKLRTDPILR 313 (482)
T ss_pred hcCCcceeeeehHHHHHHHHHHHhhcccccccccCCchHHHHHHHHHHHHHHhhhHhhhhHHHhhhhhhHhhhhcCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 999999999
Q ss_pred HHHHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccc-c-CCchhhhHHHHHH
Q psy2379 316 WTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGY-K-LEPFWGKCSFWFW 393 (585)
Q Consensus 316 f~l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~-~-~~~~l~~~~fwl~ 393 (585)
|.+.+..+|.+..++|.++|.+++|..-|.|+|.+||.|...+|.+.|..+|++||..||++|| + +|.+|-++|||+.
T Consensus 314 flv~a~~fYgmSTfEGp~maIktVNaLsHyTdwtiGHVH~GalgwV~~it~gsiY~~vPrl~~r~~mys~~Li~~hFWla 393 (482)
T COG3278 314 FLVVALAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVGFITIGSIYHMVPRLFGRERMYSLRLVNAHFWLA 393 (482)
T ss_pred HHHHHHHHHhhhhhccchhheeehhhhhccccccccccccchhhHHHHHHHHHHHhhhHHHhCcccccchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 3 5999999999999
Q ss_pred HHHHHHHhhhhhhccc-CCccccccc------ccc----hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccc
Q psy2379 394 LIGFYVAFMPLYILGF-MGVTRRMSH------FED----ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLI 460 (585)
Q Consensus 394 ~iG~~l~f~pm~~~Gl-~GmpRR~~~------y~~----~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~ 460 (585)
++|..+++..|.++|. ||+.+|.++ |+- ..-.|+..++++|+.+...|.++|.+|++++++.+++.+
T Consensus 394 tiGivlY~aaMwiaGi~QGLmwr~~~~~G~L~ysFiesv~a~~Pyy~iR~vGG~~~l~G~llmayn~~~Ti~~~~~~~ 471 (482)
T COG3278 394 TIGIVLYIAAMWIAGITQGLMWRAYDEDGTLTYSFIESVVATHPYYVIRAVGGLLYLSGMLLMAYNIWMTIRGGKPLE 471 (482)
T ss_pred HHhHHHHHHHHHHHHHHhccchhhccCCCcEEeeHHHHHHHhchhHHHHHhccHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 9999999999999996 999999877 431 246899999999999999999999999999998776543
No 31
>KOG4769|consensus
Probab=100.00 E-value=2.4e-39 Score=295.80 Aligned_cols=180 Identities=41% Similarity=0.633 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhH
Q psy2379 43 MIFFVAMPLVTG-IINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVD 121 (585)
Q Consensus 43 Mif~~~~p~~~g-~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d 121 (585)
|+|+++||..+| ++||++|+++||+|++|||+|+.|||+...+.+++..|-++..++++|||.|||+++++.++|.++|
T Consensus 1 miff~vmp~~iggfgn~lvplm~ga~D~afPr~nn~sfw~lp~~l~~L~~s~~ve~g~gT~WtvyPpls~~~sH~Gasvd 80 (182)
T KOG4769|consen 1 MIFFLTMPENIGGFGNPLVPLIPCAGDGAFPRLNNDSFWDLPSALIALGDSACVEAGAGTRWTVYPPLAGNPSHAGASVD 80 (182)
T ss_pred CeEEEEEHhHcCCcCCceeeeeEcCCCCCCcccccCchhhcchHHHHhhHHHHHhhcCCCcceECCCccCCcCCCcchHH
Confidence 688999999997 9999999999999999999999999999999999999999988899999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCC
Q psy2379 122 YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDL 201 (585)
Q Consensus 122 ~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~ 201 (585)
..+.++++.+++++++++||+.|.+++|++|++..|+|+|+|+.+.|+.+.++++|++++ ++|++.||++
T Consensus 81 laIfslhl~g~ss~LGain~i~ttinmRt~~~~~~~~~lfvws~~iT~~llllslPvl~~-Itml~~drN~--------- 150 (182)
T KOG4769|consen 81 LAIFSLHLAGKSSCLGAVNLIGTTINMRTREKLQVRVTLFVWSKSKTCKLLLLTLPVLLD-ITMLFQDRNS--------- 150 (182)
T ss_pred HHHHHHHhccchhhhhhhheeeEEEeccCccceeeechHHHHHHHHHHHHHHHhhHHHhh-hHHhhhccCc---------
Confidence 999999999999999999999999999999999999999999999999999999999998 9999999996
Q ss_pred CCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCCCCCCchHH
Q psy2379 202 GGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSM 249 (585)
Q Consensus 202 Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~kplfsy~~~ 249 (585)
||||+++|+||++|.+++.+++||.|||-.+
T Consensus 151 -----------------eVYILIlPgFgiiShiv~~~skKe~FG~~gm 181 (182)
T KOG4769|consen 151 -----------------EVYILILPGFGIISHIVTYYSKKEPFGYMGM 181 (182)
T ss_pred -----------------eEEEEEeccccceeeeeehhccCCccccccc
Confidence 9999999999999999999999999999654
No 32
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.4e-10 Score=123.78 Aligned_cols=395 Identities=15% Similarity=0.169 Sum_probs=244.4
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCCC
Q psy2379 32 YNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIG---ARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPP 108 (585)
Q Consensus 32 y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~ig---ard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~YpP 108 (585)
||-.||.|.+..++.-++-. .|++.|++|..-+ .| ...|++-+..+|....+.+....+...=- ++.-|+-
T Consensus 295 fni~R~~H~nlavvWIa~~w-laa~lyllP~~~~pk~~~-l~s~~L~~al~~v~~gs~~g~~~gyl~~l-~~~~~F~--- 368 (717)
T COG3256 295 FNITRTVHTNLAVVWIATGW-LAAGLYLLPELGGPKFQE-LGSPKLLIALFFVVVGSLAGAWLGYLQLL-PAPFWFW--- 368 (717)
T ss_pred HHHHHHHHHhHHHHHHHHHH-HHHHHHhhhhhcCchhhh-hccHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcccee---
Confidence 99999999999998877766 7999999999988 44 45788888888888877777766654311 1111110
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2379 109 LSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTL 188 (585)
Q Consensus 109 ls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a~~~l~~ 188 (585)
-+++=.|..+... ++=+.++.++....++-|-.++--.+.||.+..+.-++. +.....++.+
T Consensus 369 -~G~QG~~~~~~g~-lwqlll~~~ll~~v~Lmfra~~t~~~~~grkt~~i~~~~-------------~~~~gig~Ff--- 430 (717)
T COG3256 369 -FGHQGYEYLGRGR-LWQLLLIKGLLVWVALMFRANVTATKLKGRKTTLIAILL-------------LSLTGIGLFF--- 430 (717)
T ss_pred -ecccCCccccchH-HHHHHHHHHHHHHHHHHHHhcchhhhcCCcchhHHHHHH-------------HHHHHHHHHH---
Confidence 0111112222211 112233333334444444333333344554322222111 1111122222
Q ss_pred cccccceeeccCCCCcchhhhHHHHHhhhhHHH-HhhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHh-hHhccc
Q psy2379 189 DRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVY-ILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLS-YIVWLH 266 (585)
Q Consensus 189 dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vy-i~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls-~~vw~H 266 (585)
++.++.+.-- |=-.=|-.-|+=-|--|- ++=.=+-.++..++-+..+-|--.-....+....+.++| ..--.|
T Consensus 431 ----~~~~~~~~~~-n~t~dey~rWwvVHlwVEGfwe~i~~~ilafLlv~lg~V~rs~a~~a~~v~~~l~l~sGiiGT~H 505 (717)
T COG3256 431 ----LFGLYNPEWT-NLAVDEYWRWWVVHLWVEGFWEVIATAILAFLLVKLGGVDRSVAEKALYVIAALALFSGIIGTLH 505 (717)
T ss_pred ----hhhhccCCCC-CchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHcCccCccc
Confidence 2234433211 111113333555787773 222222233333333333221111112233334455555 556689
Q ss_pred cccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCc--ccc-chhHHHHHH--Hhhhhhhccccceeeccccccc
Q psy2379 267 HFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR--IRF-EVPILWTIG--FMITFVIGGMAGVILAVPAANF 341 (585)
Q Consensus 267 Hmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~--i~~-~~p~lf~l~--~i~~f~iGG~tGv~la~~~~d~ 341 (585)
|.+-.|.|..+..+.+++|.+=.+|-....+--.-++.+++ -.. +..+.+.++ ....|+-.|+=|-+.-.+.+|+
T Consensus 506 HyYf~G~P~~wm~iGAvfSaLEVvPl~~l~~~af~~~~r~~~~~~~~r~~~~~~~~~Av~~wfvGAgv~Gflin~pivnY 585 (717)
T COG3256 506 HYYFIGTPGYWMWIGAVFSALEVVPLFLLGLEAFELWKRGEGRDWPNRARLPWSCFVAVGAWFVGAGVFGFLINPPIVNY 585 (717)
T ss_pred eeeecCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH
Confidence 99999999999999999999988998877655555555553 221 222333333 2333566678888888999999
Q ss_pred ccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccC-CchhhhHHHHHHHHHHHHHh-hhhhhccc-CCccccccc
Q psy2379 342 LLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKL-EPFWGKCSFWFWLIGFYVAF-MPLYILGF-MGVTRRMSH 418 (585)
Q Consensus 342 ~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~-~~~l~~~~fwl~~iG~~l~f-~pm~~~Gl-~GmpRR~~~ 418 (585)
.+|.|....+|-|..+.|.-.+..++..-|-+|.+.++.- ++|+.++.||++.+|+.+.. +.+..+|. |=+.-|.-.
T Consensus 586 Y~hG~q~TaaHaHlAffgvYgml~i~mm~~Al~~l~~~~~~~~kl~~~afw~m~~gl~~m~~~sL~~aG~~Q~~~s~~~G 665 (717)
T COG3256 586 YTHGLQTTAAHAHLAFFGVYGMLALAMMLYALRELRPIGEAPDKLLRWAFWLMNGGLVLMTAISLLPAGVVQAWLSITHG 665 (717)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999998764 77899999999999999887 89999995 544433322
Q ss_pred c----c-----chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q psy2379 419 F----E-----DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRK 455 (585)
Q Consensus 419 y----~-----~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~ 455 (585)
| . .+..+.+..+|..|.++.+.|.+++++...+..++
T Consensus 666 ~W~Ars~~~~~q~~l~~~vWLR~~gdvVf~igA~~~li~~lr~~~~ 711 (717)
T COG3256 666 YWYARSPEFAVQDQLALFVWLRIGGDVVFAIGAIVFLIYVLRGGKG 711 (717)
T ss_pred hhhhcCHHHHhHHhhhheeEEEecCCEEEEhHHHHHHHHHHhcccc
Confidence 2 1 12456667789999999999999999888765543
No 33
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I. Gene symbols ccoN and fixN are synonymous.
Probab=98.38 E-value=9.5e-05 Score=82.08 Aligned_cols=208 Identities=12% Similarity=0.104 Sum_probs=118.3
Q ss_pred hhh-hHHHHHHHHhhhcCCCCCCchHHHHHHHHH------HHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhH-H
Q psy2379 224 VLP-VFGIFSEVVSTFSSKRLFGYSSMVYATVVI------TLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGA-K 295 (585)
Q Consensus 224 ilP-a~gi~~~iip~~~~kplfsy~~~v~a~~~i------~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv-~ 295 (585)
... .+|..|+++|+.+|+|++|.|+..++++.. ++.+...+. ++|- +.. ..---.-..+.+ +++ .
T Consensus 66 ~~~~~~g~~yy~~~r~~~~~l~~~~la~~~~~~~~~~~~~a~~~~~~G~----~~g~-eY~-e~~~~~~~~i~v-~~l~~ 138 (474)
T TIGR00780 66 GGGGLIATSYYVVQRTYHQRLFGGIVGLFHFWGWQILIVLAVISLFAGL----TQSK-EYA-ELEWPLDIIVTV-VWVLY 138 (474)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHhccC----ccCc-ccc-cchHHHHHHHHH-HHHHH
Confidence 444 469999999999999999999999888763 333322222 2221 110 001112222222 333 5
Q ss_pred HHHHHHhhcCCccccchhHHHHHHH-h----hhhhhccccc--ee---ecc----cccccccccceEEEeeeehhhhhhH
Q psy2379 296 IFNWLFTMYRGRIRFEVPILWTIGF-M----ITFVIGGMAG--VI---LAV----PAANFLLHNSLFLVAHFHNVIIGGV 361 (585)
Q Consensus 296 ifnwl~Tl~~g~i~~~~p~lf~l~~-i----~~f~iGG~tG--v~---la~----~~~d~~~H~T~~VvaHfH~~l~gg~ 361 (585)
.+|.+.|+.++|-+-.-...|.+.. + .+|+.+-+.= -+ .+. -..|.. -.|-.+| ..+.-..
T Consensus 139 ~~n~~~T~~~r~~~~~yv~~W~~~a~~~~~~~l~~~~~~~~p~~l~~~~~~~~~~G~~d~~---~~Ww~gH--~~V~~~l 213 (474)
T TIGR00780 139 GVVFFGTISKRKENHIYVANWFYIAFIVGIAVLHIVNNLSIPTYLVAWKSISMYSGSNDAM---IQWWYGH--NAVGFFL 213 (474)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhccccchhhccccccccccCccCce---eEEEecC--HHHHHHH
Confidence 6899999999654311123333322 2 2332222210 00 000 012222 3366665 5554445
Q ss_pred HHHHHHHHHHHhhhhccccC-CchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHH
Q psy2379 362 LFGLMSGINYWFPKAFGYKL-EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAM 440 (585)
Q Consensus 362 ~f~~~ag~yyw~Pkl~G~~~-~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~ 440 (585)
+.+.+|..||.+||.+||+. |+++.+++||...+ +....-+-|.-. .|+|. .+..+.++.++++.+
T Consensus 214 ~~~~lg~~Yy~lpk~~~rpi~sy~l~~~~fw~l~~-~~~~~g~HHl~~-~g~P~-----------~~~~i~~v~S~~~~v 280 (474)
T TIGR00780 214 TAGFLGMMYYFLPKQAGRPVYSYKLSLFHFWALIF-VYIWAGPHHLHY-TALPD-----------WVQTLGMVFSVILIL 280 (474)
T ss_pred HHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH-HHHhccCcccee-CCCCH-----------HHHHHHHHHHHHHHH
Confidence 66789999999999999995 99999999998833 222222222211 23332 334556666777788
Q ss_pred HHHHHHHHHHHHHHhc
Q psy2379 441 GILSFIIQLIVSYRKR 456 (585)
Q Consensus 441 g~llfv~nl~~Sl~~~ 456 (585)
-....++|.+.|++.+
T Consensus 281 Ps~~~~~n~~~Tl~g~ 296 (474)
T TIGR00780 281 PSWGGMINGLMTLSGA 296 (474)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888888888887544
No 34
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=98.02 E-value=0.00086 Score=77.57 Aligned_cols=206 Identities=13% Similarity=0.103 Sum_probs=111.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHh------hHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHH
Q psy2379 226 PVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLS------YIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNW 299 (585)
Q Consensus 226 Pa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls------~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnw 299 (585)
-.+|..|+++|+.+|+|++|.|+..+.++...+.. ...+. +.|-.-. ..--..-..+++=-.+..+|-
T Consensus 71 a~~g~~yy~vprl~~~~l~s~~La~~~~~~~~~~i~~~~i~l~~G~----tqG~EY~--El~w~idi~i~v~wl~~~~n~ 144 (712)
T PRK14485 71 AIFAGVYYSTQRLLKARMFSDLLSKIHFWGWQLIIVSAAITLPLGF----TTSKEYA--ELEWPIDIAIALIWVVFGVNF 144 (712)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHccc----ccCcchh--hcccHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999888876533322 22233 2332110 000001111222122356899
Q ss_pred HHhhcCCccccchhHHHHHH-Hh----hhhhhcccccee--eccccc-----ccccccceEEEeeeehhhhhhHHHHHHH
Q psy2379 300 LFTMYRGRIRFEVPILWTIG-FM----ITFVIGGMAGVI--LAVPAA-----NFLLHNSLFLVAHFHNVIIGGVLFGLMS 367 (585)
Q Consensus 300 l~Tl~~g~i~~~~p~lf~l~-~i----~~f~iGG~tGv~--la~~~~-----d~~~H~T~~VvaHfH~~l~gg~~f~~~a 367 (585)
+.|+.++|-+-.....|.+. ++ .+|+.|-+.+.. ..+.++ |.. -.|-++| ..+-...+...+|
T Consensus 145 ~~T~~kr~~~~~yv~~w~~~a~~i~ia~lyi~~~l~~p~~~~~~~~~~~Gv~da~---~~WW~gH--~~Ve~~l~~p~lg 219 (712)
T PRK14485 145 FGTLIKRRERHLYVAIWFYIATIVTVAVLHIVNSLELPVSALKSYSVYAGVQDAL---VQWWYGH--NAVAFFLTTPFLG 219 (712)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhccccccccccceecccccchh---hheehhh--HHHHHHHHHHHHH
Confidence 99999887542333333322 22 334444433221 000000 111 1244554 4553346668899
Q ss_pred HHHHHhhhhccccC-CchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHH
Q psy2379 368 GINYWFPKAFGYKL-EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFI 446 (585)
Q Consensus 368 g~yyw~Pkl~G~~~-~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv 446 (585)
.+||..||..||+. +.++..++||...+. .+..-+-|.- ..|+|. .+..+.++.+++..+=.....
T Consensus 220 i~yyilPk~a~rpI~sy~Lsvi~Fw~L~~~-~i~~G~HHly-~tG~P~-----------~~~~lg~vfS~l~vvPs~~~~ 286 (712)
T PRK14485 220 LMYYFVPKAANRPVYSYRLSIIHFWSLIFI-YIWAGPHHLL-YTALPD-----------WAQNLGVVFSVMLIAPSWGGM 286 (712)
T ss_pred HHHHHHHHHhCCCeehhhHHHHHHHHHHHH-HHhcccccce-eCCCCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 899999999986632 1111111211 113322 122334444455555555566
Q ss_pred HHHHHHHHh
Q psy2379 447 IQLIVSYRK 455 (585)
Q Consensus 447 ~nl~~Sl~~ 455 (585)
.|.+.++++
T Consensus 287 ~N~l~Tl~g 295 (712)
T PRK14485 287 INGLLTLRG 295 (712)
T ss_pred HHHHHhhcc
Confidence 677777654
No 35
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=97.64 E-value=0.0013 Score=73.66 Aligned_cols=217 Identities=12% Similarity=0.084 Sum_probs=120.4
Q ss_pred hhhhHHHHhhhhh-HHHHHHHHhhhcCCCCCCchHHHHHHHHH------HHHhhHhccccccccCCc----hhHHHHHHH
Q psy2379 215 WGHPEVYILVLPV-FGIFSEVVSTFSSKRLFGYSSMVYATVVI------TLLSYIVWLHHFFTMGSG----ANVNAFFGI 283 (585)
Q Consensus 215 fGHp~Vyi~ilPa-~gi~~~iip~~~~kplfsy~~~v~a~~~i------~~ls~~vw~HHmf~~g~~----~~~~~~f~~ 283 (585)
=|.-.++.+..|+ +|..++++|+.+|+|+.+.|....++|.. +..++..+- +++.+ ++......+
T Consensus 93 H~~~~if~w~~~~~~g~~~ylvp~~~g~~l~~~~l~~~~~w~~~~g~~l~~~~~~~G~----~~~~ey~e~~~~i~l~l~ 168 (493)
T cd01661 93 HTNAVIFGFGGNALIATSFYVVQRTCRARLAGGNLAWFVFWGYNLFIVLAATGYLLGI----TQGKEYAEPEWYVDLWLT 168 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHccc----cccccccccchhHHHHHH
Confidence 4555567778884 69999999999999999999988888653 233332221 22321 111111111
Q ss_pred HHHHHhhchhHHHHHHHHhhcCCcccc-chhHHHHHH----Hhhhhhhccccce--eeccccc----ccccccceEEEee
Q psy2379 284 TTMIISIPTGAKIFNWLFTMYRGRIRF-EVPILWTIG----FMITFVIGGMAGV--ILAVPAA----NFLLHNSLFLVAH 352 (585)
Q Consensus 284 ~t~~iaiPtgv~ifnwl~Tl~~g~i~~-~~p~lf~l~----~i~~f~iGG~tGv--~la~~~~----d~~~H~T~~VvaH 352 (585)
. .. ..-..|.+.|+.+.|.+- .....+..+ .-..|..+.+... ....... |.+--.-.|-.+|
T Consensus 169 v---~~---~~~~~~~~~Ti~~~r~~~~~v~~w~~~a~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~G~~~~~~~Ww~gH 242 (493)
T cd01661 169 V---VW---VAYLLPFLGTLLRRKEPHIYVANWYYLAFIVTVAVLHIVNNLAVPVSWFGSKSYSAHAGVQDATTQWWYGH 242 (493)
T ss_pred H---HH---HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCcccCCCceeeeeeccc
Confidence 1 11 112468899988876431 111111222 2233333332211 0001111 0111123466665
Q ss_pred eehhhhhhHHHHHHHHHHHHhhhhccccC-CchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHH
Q psy2379 353 FHNVIIGGVLFGLMSGINYWFPKAFGYKL-EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIA 431 (585)
Q Consensus 353 fH~~l~gg~~f~~~ag~yyw~Pkl~G~~~-~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~ 431 (585)
..+....+-+.+|.+||..||..||+. |.++..++||...+-... .|. -..+.-+.|. .+..+.
T Consensus 243 --~~V~~~~~p~~lg~~y~~ipk~a~rpi~sy~l~~~~f~~l~~l~~~-------~g~----HHl~~~~~p~--~~~~l~ 307 (493)
T cd01661 243 --NAVGFFLTAGFLAMMYYFLPKIAERPVYSYRLSIIGFWALAFLYIW-------AGP----HHLHYTALPD--WLQTLG 307 (493)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHhc-------ccc----cccccCCCcH--HHHHHH
Confidence 455444455577999999999999985 999999999986543211 120 1111111122 234455
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhc
Q psy2379 432 AFGTLLIAMGILSFIIQLIVSYRKR 456 (585)
Q Consensus 432 siGa~i~~~g~llfv~nl~~Sl~~~ 456 (585)
++.++++.+-.....+|.+.|++++
T Consensus 308 ~~~S~li~vPs~~~~~n~~~Tl~g~ 332 (493)
T cd01661 308 MVFSVMLWMPSWAGMINGLLTLRGA 332 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6667888888889999999998654
No 36
>PRK14488 cbb3-type cytochrome c oxidase subunit I; Provisional
Probab=97.28 E-value=0.0023 Score=71.29 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhh
Q psy2379 3 FRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMT 82 (585)
Q Consensus 3 ~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~ 82 (585)
.+|++.|++........ . .|.-+....|.-..++++.....+|..+|.+|++.|.+.+..+|+...+||++
T Consensus 317 ~~gg~~G~~~a~~~vn~-------~--~h~T~~v~aH~H~~l~g~~~~~~~g~~y~~~P~l~g~~~~~s~~L~~~~fwl~ 387 (473)
T PRK14488 317 GMSTFEGPMMSIKTVNA-------L--SHYTDWTIGHVHSGALGWVGMISIGALYHLIPRLWGRERMYSLKLVNWHFWLA 387 (473)
T ss_pred HHHHHHHHHHHHHhhhh-------h--hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34666666655443222 1 22333477799999999999999999999999999964266899999999999
Q ss_pred HHHHHHHHHHhhh-cccCCcccccCCCCCCCCCCC-C-c-h-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy2379 83 SGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSP-G-V-G-VDY---YIWSLQIAGIGTLLSGINMIATIIKMRA 150 (585)
Q Consensus 83 ~~g~~l~~~s~~~-G~~~~~gWt~YpPls~~~~~p-~-~-~-~d~---~i~~l~l~~vg~~l~~in~i~Ti~~~r~ 150 (585)
++|..+...++.. |--++.-|..+.++....|.. . . . .++ -..|=.+..+|.++...|++.|+.+.|+
T Consensus 388 ~iG~~~~~~~l~~~Gl~qG~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~iGg~i~~~g~llf~~n~~~t~~~~~~ 463 (473)
T PRK14488 388 TIGIVLYIASMWVAGIMQGLMWRAVDEDGTLTYSFVETVEAMHPYYVIRALGGLLFLSGMLIMAYNVWKTIRAGKA 463 (473)
T ss_pred HHHHHHHHHHHHHHHHHccccceecccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999988765 322332333333221100100 0 0 0 011 1234456788888999999999865433
No 37
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=97.12 E-value=0.024 Score=63.86 Aligned_cols=239 Identities=12% Similarity=0.085 Sum_probs=127.6
Q ss_pred CcccchhH--hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCccccc
Q psy2379 28 PPEHYNQI--FTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLG 105 (585)
Q Consensus 28 ~~~~y~~~--~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~ 105 (585)
||..|..+ +.-|-. ++.+..| .+|..++++|+..|.| +..-|+...++|... ..+..++.
T Consensus 221 d~~l~~~lfWffGHp~--Vy~~ilp-~~g~~y~ilp~~~~~~-~~s~~~~~~a~~~i~------~l~~~vw~-------- 282 (506)
T TIGR02891 221 DPLLWQHLFWFFGHPE--VYIIFLP-AFGIISEILPTFARKP-IFGYRAMVYATVAIG------FLSFGVWA-------- 282 (506)
T ss_pred Ceehhhhhhhhccccc--chhhhhh-HHHHHHHHHHHHcCCc-chhhHHHHHHHHHHH------HHheeecc--------
Confidence 45545544 455654 4668888 6899999999998865 444455555544422 22333322
Q ss_pred CCCCCCCCCCCCchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 106 YPPLSGIAQSPGVGVDYY---IWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV 182 (585)
Q Consensus 106 YpPls~~~~~p~~~~d~~---i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a 182 (585)
-..+.++.+.|.- ...-.+..+-+.+...|.+.|+.+.|.+ + + +...|.........+-.+..+.-+
T Consensus 283 -----HH~~~~g~~~~~~~~f~~~T~~i~vP~~~~~f~~~~tl~~~~~~---~-~-~~~~~~~~~i~~f~~gg~~G~~~a 352 (506)
T TIGR02891 283 -----HHMFTTGMPPLALAFFSAATMLIAVPTGVKVFNWIATLWGGSIR---F-T-TPMLFALGFIFLFVIGGLTGVMLA 352 (506)
T ss_pred -----cceecCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcC---C-C-HHHHHHHHHHHHHhhhhcchHhhh
Confidence 1223333332321 1111224455666778888888764322 1 2 444455432222222222222211
Q ss_pred HHhhhccccccceeeccCCCCcchhhhHHHHHhhh--hHHHHhhhh-hHHHHHHHHhhhcCCCCCCchHHHHHHHHH--H
Q psy2379 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGH--PEVYILVLP-VFGIFSEVVSTFSSKRLFGYSSMVYATVVI--T 257 (585)
Q Consensus 183 ~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGH--p~Vyi~ilP-a~gi~~~iip~~~~kplfsy~~~v~a~~~i--~ 257 (585)
...+|+...-+ .|-=|| -.++-.... .+|.+|+.+|+..||+ ++.|+..+++|.. +
T Consensus 353 --~~~vn~~~H~T----------------~~VvaHfH~~~~~~~~~~~~~~~y~~~P~~~g~~-~~~~l~~~~fwl~~iG 413 (506)
T TIGR02891 353 --SVPLDWQLHDT----------------YFVVAHFHYVLVGGSVFAIFAAIYYWFPKVTGRM-YNERLGRWHFWLTFVG 413 (506)
T ss_pred --hHHHHHHHHhc----------------chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHH
Confidence 12334433222 344555 344444444 5688999999999997 9999999998854 4
Q ss_pred HHhhHhccccccccCC--------ch----hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchh
Q psy2379 258 LLSYIVWLHHFFTMGS--------GA----NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVP 313 (585)
Q Consensus 258 ~ls~~vw~HHmf~~g~--------~~----~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p 313 (585)
+..+.+..|=.=..|+ +. ..+...++.+.++.+-..+-++|.+.++.++|.....|
T Consensus 414 ~~~~~~~m~~~Gl~G~pRR~~~~~~~~~~~~~~~~~siGg~i~~~g~llfi~nl~~sl~~~r~~~~~~ 481 (506)
T TIGR02891 414 FNLTFFPMHLLGLLGMPRRYYTYPPQMGFATLNLISTIGAFILAAGFLLFLWNLIWSLRKGPKAGANP 481 (506)
T ss_pred HHHHHHHHHHHHhcccccCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCC
Confidence 4444433331101111 11 12334555566666666677889999998876554333
No 38
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=96.89 E-value=0.041 Score=61.64 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=126.1
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||..|..++=.=|---++.+.+|+. |..++++|+..|.|.+...|...+++|...+ .|..+..
T Consensus 218 d~~l~q~lfWffGHp~Vyi~ilPa~-g~~y~iip~~~g~~pi~~~~~~i~a~~~i~~------~~~~vw~---------- 280 (488)
T cd01663 218 DPILYQHLFWFFGHPEVYILILPGF-GIISHIISTFSGKKPVFGYLGMVYAMLSIGI------LGFIVWA---------- 280 (488)
T ss_pred Ceeeeeeeheecccccceehhhhhh-HHHHHHHHHHcCCCcccchHHHHHHHHHHHH------Hhhhccc----------
Confidence 3444444443334445678889975 9999999999977766544544455554322 2222221
Q ss_pred CCCCCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2379 108 PLSGIAQSPGVGV---DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV-L 183 (585)
Q Consensus 108 Pls~~~~~p~~~~---d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a-~ 183 (585)
...+.++.+. .+....-.+..+-+.+...|.+.|+.+.|.+ + + +..-|.... +..+..-.+++. .
T Consensus 281 ---HHm~~~g~~~~~~~~~~~~T~~i~vPs~i~~fn~~~Tl~~~~~~---~-~-~p~~f~~~~---~~~f~~gg~tGi~~ 349 (488)
T cd01663 281 ---HHMFTVGLDVDTRAYFTAATMIIAVPTGIKVFSWLATMWGGSIK---F-E-TPMLWALGF---IFLFTIGGLTGVVL 349 (488)
T ss_pred ---cceecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---C-C-hHHHHHHHH---HHHHHhhccchHHh
Confidence 1122222211 2222233344567788889999999865443 2 2 333333322 222222222211 1
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhh--HHHHhhh-hhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHh
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHP--EVYILVL-PVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLS 260 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp--~Vyi~il-Pa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls 260 (585)
....+|..+.-+ .|-=||= .+..... ..++.+|+.+|+..||+ ++.|+..+.+|...+-.
T Consensus 350 a~~~~d~~~H~T----------------~~VvgHfH~~~~~~~~~~~~~~~y~~~P~~~gr~-~~~~l~~~~fwl~~iG~ 412 (488)
T cd01663 350 ANSSLDIALHDT----------------YYVVAHFHYVLSMGAVFAIFAGFYYWFPKITGLS-YNETLGKIHFWLMFIGV 412 (488)
T ss_pred hhHHHHHHHhcc----------------ccccchhhhhhhHhHHHHHHHHHHHHHHHHcCcC-ccHHHHHHHHHHHHHHH
Confidence 112234333222 2444554 3333333 36799999999999999 69999999997643222
Q ss_pred -hHhccccccc-cCCc-------h---hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 261 -YIVWLHHFFT-MGSG-------A---NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 261 -~~vw~HHmf~-~g~~-------~---~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
......|... .|+| + ..+.+.++.+.++.+-..+-++|.+.++.++|..
T Consensus 413 ~~~f~~m~~~Gl~G~pRR~~~y~~~~~~~n~issiG~~i~~~g~llf~~nl~~sl~~gr~~ 473 (488)
T cd01663 413 NLTFFPQHFLGLAGMPRRYPDYPDAYAGWNMISSIGSLISFVSVLLFLFIVWESFVSGRKV 473 (488)
T ss_pred HHHHHHHhhhcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2223344321 1211 1 2334455555555555556678888888776543
No 39
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=96.19 E-value=0.02 Score=53.17 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=47.5
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy2379 516 LMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYY 569 (585)
Q Consensus 516 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 569 (585)
.-|..|++|+.+|+...+.++|+++.. |+.++|.+..+.+.+.|.||+.++++
T Consensus 83 fFsP~SwWPl~la~~~al~~lGla~g~-Wl~~iG~~~~i~~~~G~vfEy~rg~~ 135 (137)
T PF12270_consen 83 FFSPHSWWPLVLAAAAALVFLGLAFGW-WLILIGAVLLIVAVVGWVFEYYRGPE 135 (137)
T ss_pred cCCCccHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhheeccCcc
Confidence 567789999999999999999999776 79999999999999999999887654
No 40
>MTH00153 COX1 cytochrome c oxidase subunit I; Provisional
Probab=96.17 E-value=0.42 Score=53.89 Aligned_cols=238 Identities=17% Similarity=0.219 Sum_probs=131.7
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccC
Q psy2379 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGY 106 (585)
Q Consensus 27 l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Y 106 (585)
-||..|..++=.=|---++.+..|+ +|..+.++|...|+|+. +-|.+.. ... ..+...|..+..
T Consensus 224 gdplL~q~lFWffGHPeVYi~ilPa-~g~~~~ii~~~~~~~~~-~~~~~~i---~a~--~~i~~l~~~Vw~--------- 287 (511)
T MTH00153 224 GDPILYQHLFWFFGHPEVYILILPG-FGMISHIISQESGKKET-FGTLGMI---YAM--LAIGLLGFIVWA--------- 287 (511)
T ss_pred CCeeeehhhhhhccchHHHHHHHHH-HHHHHHHhhhhcCCCcc-hHHHHHH---HHH--HHHHHHhcccch---------
Confidence 3566688887777777788888998 78899999999987642 2222211 111 112223333321
Q ss_pred CCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2379 107 PPLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV- 182 (585)
Q Consensus 107 pPls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a- 182 (585)
...|.+|.+.+ +.-..-.+.++-|.+...|.+.|+.+.|.+ + + +.+.|.. +.+..+.+-.+++-
T Consensus 288 ----HHmf~~G~~~~~~~~f~~~T~~iavPt~v~~f~w~~tl~~~~~~---~-~-~~~~~~l---~f~~~f~~GG~tGv~ 355 (511)
T MTH00153 288 ----HHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGSQIN---Y-S-PSLLWAL---GFVFLFTIGGLTGVV 355 (511)
T ss_pred ----hheeeccCChhHHHHHHHHHHHHHhhhHhHHHHHHHHHhCCCCC---C-C-hHHHHHH---HHHHHHHhhhhhhhh
Confidence 22333333222 222233445667788889999999877654 2 2 4455532 22223322222211
Q ss_pred HHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHh--hh-hhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH
Q psy2379 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYIL--VL-PVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLL 259 (585)
Q Consensus 183 ~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~--il-Pa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~l 259 (585)
+....+|..+. +=.|-=||=.-.+. .+ ..++..|+..|+.+||+. +.|+..+.+|...+-
T Consensus 356 ~~~~~~d~~~H----------------~T~~VvaHFH~~l~~g~~~~~~~~~y~~~P~~~gr~~-~~~l~~~~f~~~~vG 418 (511)
T MTH00153 356 LANSSIDIILH----------------DTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFTGLTM-NPKWLKIQFFIMFIG 418 (511)
T ss_pred hcchhhhhhhc----------------ccHHhhcchhhheehhHHHHHHHHHHHHhhhhccccc-hHHHHHHHHHHHHHH
Confidence 11123343332 23455566333221 22 347899999999999985 899999998765332
Q ss_pred h--hHhccccccccCCch----------hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 260 S--YIVWLHHFFTMGSGA----------NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 260 s--~~vw~HHmf~~g~~~----------~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
. .....|=.=..|+|. ..+.+.++.+.+..+-..+-++|.+-++.++|..
T Consensus 419 ~~l~f~pmh~~Gl~GmPRR~~~Yp~~~~~~n~vsSiGa~Il~ig~llFi~~l~~Sl~~gr~v 480 (511)
T MTH00153 419 VNLTFFPQHFLGLAGMPRRYSDYPDAYTSWNVISSIGSTISLISILFFIFIIWESMISKRPV 480 (511)
T ss_pred HHHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2 223333221234433 3345555666665655556678888888777654
No 41
>PF00115 COX1: Cytochrome C and Quinol oxidase polypeptide I This family corresponds to chains a and n.; InterPro: IPR000883 Cytochrome c oxidase (1.9.3.1 from EC) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (1.10.3 from EC), is directly involved in the coupling between dioxygen reduction and proton pumping [, ]. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (CO I) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members [, , ]. In contrast to eukaryotes the respiratory chain of prokaryotes is branched to multiple terminal oxidases. The enzyme complexes vary in haem and copper composition, substrate type and substrate affinity. The different respiratory oxidases allow the cells to customize their respiratory systems according to a variety of environmental growth conditions []. It has been shown that eubacterial quinol oxidase was derived from cytochrome c oxidase in Gram-positive bacteria and that archaebacterial quinol oxidase has an independent origin. A considerable amount of evidence suggests that proteobacteria (Purple bacteria) acquired quinol oxidase through a lateral gene transfer from Gram-positive bacteria []. Nitric oxide reductase (NOR) (1.7.99.7 from EC) exists in denitrifying species of archae and eubacteria and is a heterodimer of cytochromes b and c. Phenazine methosulphate can act as acceptor.; GO: 0004129 cytochrome-c oxidase activity, 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0009060 aerobic respiration, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 3O0R_B 3FYI_C 2GSM_A 3FYE_C 3DTU_C 1M57_A 1M56_G 3ABK_N 2Y69_N 1V55_A ....
Probab=96.00 E-value=0.0032 Score=69.71 Aligned_cols=147 Identities=23% Similarity=0.377 Sum_probs=101.6
Q ss_pred chhHHHHHHHhhhhhhccccceeeccccc--cccccc-ce--EEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc-C-Cc
Q psy2379 311 EVPILWTIGFMITFVIGGMAGVILAVPAA--NFLLHN-SL--FLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK-L-EP 383 (585)
Q Consensus 311 ~~p~lf~l~~i~~f~iGG~tGv~la~~~~--d~~~H~-T~--~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~-~-~~ 383 (585)
+...++.+.+++.+.+|++-|.+++..-. |..-.+ +| ....|-=.++...++....|-.+|..|++.|++ + ++
T Consensus 3 ~i~~~y~~~a~~~~~vg~~~glli~~~l~~p~~l~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~y~~p~~~g~~d~~~p 82 (447)
T PF00115_consen 3 RIGLLYLVLAFVALLVGGLLGLLIRLQLAFPNFLSPDIPYNQLRTVHGNLMIFWFAMPFIIGFGNYLIPRMIGARDLAFP 82 (447)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcceeeeehhhheeeeeeccCchHHHHHheechhhcCCCCchhh
Confidence 34567888899999999999987665443 333333 44 445777677766566555554888899999998 4 78
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchh-HH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS-LQ-IWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHT 458 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~-~~-~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~ 458 (585)
|+.+++||++.+|..+...+....+- +..+.+..|++.+ .+ .-+...-.|-.+..+|.++..+|++.++.++|+
T Consensus 83 rl~~~~fwl~~~~~~~~~~s~~~g~~-~~~~~wt~ypPLs~~~~~~~~~~~~~l~l~gv~~ll~~in~~~Ti~~~r~ 158 (447)
T PF00115_consen 83 RLNWLSFWLLPIGVVLALVSIFLGGG-GPGVGWTFYPPLSSISYGGHDFFILGLLLFGVGSLLGAINFIVTILKMRA 158 (447)
T ss_pred hhhhEEEeehhhHHHHHhhccccccc-ccccccccccccccccccccchhhhhhhhchhhHHHHhhHHhhhhccccc
Confidence 99999999999999999877766543 1233344454211 11 223335556667779999999999999876553
No 42
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=95.98 E-value=0.024 Score=63.71 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=94.4
Q ss_pred hHHHHHHHhhhhhhccccceeecc----cccccccccce--EEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc-C-Cch
Q psy2379 313 PILWTIGFMITFVIGGMAGVILAV----PAANFLLHNSL--FLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK-L-EPF 384 (585)
Q Consensus 313 p~lf~l~~i~~f~iGG~tGv~la~----~~~d~~~H~T~--~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~-~-~~~ 384 (585)
...+.+.++..+++|++-|.+... +..|..--++| .+.+|--.++.+.+..+++|-.+|..|++.|.+ + .+|
T Consensus 11 ~~~y~~~~~~~~~iG~~~~lliR~~L~~p~~~~~~~~~Y~~~~T~Hg~~mif~~~~p~~~gf~~ylvp~~lg~~dl~~pr 90 (501)
T cd01662 11 GIMYIITAFVFFLRGGVDALLMRTQLALPGNDFLSPEHYNQIFTMHGTIMIFLFAMPLVFGLMNYLVPLQIGARDVAFPR 90 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCChH
Confidence 445777788888889888877543 22222212234 455777677767777777777788889999954 5 789
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccc---hhHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 385 WGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFED---ISLQ--IWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 385 l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~---~~~~--~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
+++.+||++..|..+...++...+-.|.-+. -|++ .++. +.....-+|-.+.++|.++...|++.+++++|
T Consensus 91 ln~~sfWl~~~~~~l~~~s~~~g~~~~~gWT--~YpPLs~~~~~~~~~~~~~~~~l~l~gv~sil~~in~i~Ti~~~r 166 (501)
T cd01662 91 LNALSFWLFLFGGLLLNASLLIGGFPDAGWF--AYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMR 166 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccCCce--eCCCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988877655443333332 2321 1121 11122345777777888889999999986654
No 43
>TIGR02882 QoxB cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=95.86 E-value=0.085 Score=60.79 Aligned_cols=144 Identities=17% Similarity=0.269 Sum_probs=96.6
Q ss_pred hhHHHHHHHhhhhhhccccceeecc----ccccc--ccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcc-ccC-Cc
Q psy2379 312 VPILWTIGFMITFVIGGMAGVILAV----PAANF--LLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFG-YKL-EP 383 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG~tGv~la~----~~~d~--~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G-~~~-~~ 383 (585)
.-.++.+.+++.+++||+-|.+... +..|. ..|...-+..|==.++...+...++|-.+|..|++.| |++ .+
T Consensus 53 Ig~~Yl~~a~~~~~~Gg~~alliR~qL~~p~~~~~~~~~Yn~~~T~HG~~MiF~~~mp~~~Gf~nylvPl~iGardmafP 132 (643)
T TIGR02882 53 IGVMYIICAVLMLFRGGIDALLMRAQLTVPDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIGLMNIVVPLQIGARDVAFP 132 (643)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccch
Confidence 3557888888999999988887443 33333 2345555667777777777777788877888899999 545 79
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccch---hHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDI---SLQI--WFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~---~~~~--~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
|+....||++..|..+...++...|-.+.-+. .|++. ++.+ -.....+|-.+.++|.++-.+|++.++.+.|
T Consensus 133 rLn~~sfWl~~~g~~l~~~s~~~~~~~~~GWT--~YpPLs~~~~~~~~g~d~~i~~l~l~gvssil~~iNfi~Ti~~~R 209 (643)
T TIGR02882 133 VLNALSFWLFFAGAMLFNISFVIGGSPDAGWT--NYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTILKMR 209 (643)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCcccCCc--cCCCccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998888876654333222 22210 1110 0011225556667777777888888876553
No 44
>MTH00183 COX1 cytochrome c oxidase subunit I; Provisional
Probab=95.60 E-value=0.68 Score=52.32 Aligned_cols=237 Identities=17% Similarity=0.223 Sum_probs=127.7
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||..|.+++=.=|---++.+..|+ +|..+-++|+..|+||. |-|... ...-..+...|..+..
T Consensus 227 dp~l~q~LFWffGHPeVYi~ilPa-~g~~~~il~~~~~~~~~-fg~~~~-----v~a~~~i~~l~~~Vw~---------- 289 (516)
T MTH00183 227 DPILYQHLFWFFGHPEVYILILPG-FGMISHIVAYYSGKKEP-FGYMGM-----VWAMMAIGLLGFIVWA---------- 289 (516)
T ss_pred CcchhhhhHHHhccchhhhhhccH-HHHHHHHHHHHcCCCcc-hhhHHH-----HHHHHHHHHHHhhcch----------
Confidence 566688888777777888889998 78899999999998754 222221 1111223334444421
Q ss_pred CCCCCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2379 108 PLSGIAQSPGVGV---DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV-L 183 (585)
Q Consensus 108 Pls~~~~~p~~~~---d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a-~ 183 (585)
-..+.+|.+. .+.-..-.+.++-|.+...|.+.|+.+.|-+ ++ .| ..|.... +..+.+-.+++- +
T Consensus 290 ---HHmf~~G~~~~~~~~f~~~T~~iaiPt~vkvf~w~~tl~~g~i~---~~-~p-~~~~~~f---i~~F~~GG~tGv~l 358 (516)
T MTH00183 290 ---HHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIK---WE-TP-LLWALGF---IFLFTVGGLTGIVL 358 (516)
T ss_pred ---hheecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CC-cH-HHHHHHH---HHHHHhcccchhhh
Confidence 1223333222 2233344556777888889999998865532 22 23 3333322 333333332211 1
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhh---hhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHH-HH
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILV---LPVFGIFSEVVSTFSSKRLFGYSSMVYATVVIT-LL 259 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~i---lPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~-~l 259 (585)
....+|..+ .+=.|--||=.-.+.. ...++.+|+..|+..||++- +|+..+.+|... -.
T Consensus 359 a~~~~d~~~----------------HnT~~VvaHFH~~l~~g~v~~~~~~~yyw~P~~~Gr~~~-~~l~~~~fw~~~iG~ 421 (516)
T MTH00183 359 ANSSLDIVL----------------HDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLFSGYTLH-STWTKIHFGVMFVGV 421 (516)
T ss_pred cchhhhhhh----------------cccHHHhhhHHHHHhhHHHHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHHHHH
Confidence 111223222 3345777774333322 23468999999999998765 789999987653 23
Q ss_pred hhHhccccccc-cCCchhH----------HHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 260 SYIVWLHHFFT-MGSGANV----------NAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 260 s~~vw~HHmf~-~g~~~~~----------~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
.......|... .|+|... +.+.++.+.+..+-...-+++.+-.+.++|..
T Consensus 422 ~~~f~pm~~~Gl~GmPRR~~~y~d~~~~wn~issIGs~i~~~~vL~Fi~~lw~s~~~~r~a 482 (516)
T MTH00183 422 NLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAKREV 482 (516)
T ss_pred HHHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34444555553 3555433 33334444443322223344544455555433
No 45
>MTH00184 COX1 cytochrome c oxidase subunit I; Provisional
Probab=95.56 E-value=0.74 Score=52.09 Aligned_cols=237 Identities=17% Similarity=0.208 Sum_probs=128.6
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||..|..++=.=|---++.+..|+ +|...-++|+..|.|++ |-+.... ..-..+...|..+..
T Consensus 229 dp~L~qhLFWffGHPeVYi~ilPa-~g~~~~ii~~~~g~k~~-~g~~~~v-----~a~~~i~~l~~~Vw~---------- 291 (519)
T MTH00184 229 DPILYQHLFWFFGHPEVYILILPG-FGIISQIIPTFAAKKQI-FGYLGMV-----YAMVSIGILGFIVWA---------- 291 (519)
T ss_pred CeeeeeceeeeeCCcchHHHHHhH-HHHHHHHHHHHcCCCcc-cccHHHH-----HHHHHHHHheeeecc----------
Confidence 455576666655556678888888 78888999999987764 3333321 111122333443321
Q ss_pred CCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2379 108 PLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV-L 183 (585)
Q Consensus 108 Pls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a-~ 183 (585)
-..+.+|.+.| +.-..-.+.++-|-+...|.+.|+.+.|.+ + + +..-|.... +..+..-.+++. +
T Consensus 292 ---HHmft~G~~~~~~~~f~~~T~~IavPtgikvf~w~~tl~~g~i~---~-~-~p~l~~~~f---i~~F~~GG~tGi~l 360 (519)
T MTH00184 292 ---HHMFTVGMDVDTRAYFTAATMIIAVPTGIKIFSWIATIFGGSLR---L-D-TPMLWAIGF---VFLFTMGGLTGIVL 360 (519)
T ss_pred ---cceeccCCChhHHHHHHHHHHHHHhcchhHHHHHHHHHcCCCCC---C-C-hHHHHHHHH---HHHHHhhccchhhh
Confidence 22344443333 222233345555666778999999866654 1 2 334444333 222222222211 1
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHH--Hhhh-hhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH-
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVY--ILVL-PVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLL- 259 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vy--i~il-Pa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~l- 259 (585)
....+|..+.- =.|-=||=.-. .-.. ..+|.+|+..|+.+||+ +++++..+++|...+-
T Consensus 361 a~~~~d~~~Hd----------------T~~VVaHFH~vl~~g~vf~~~ag~yyw~P~~tGr~-~~~~l~~~~fwl~~iG~ 423 (519)
T MTH00184 361 ANSSLDVVLHD----------------TYYVVAHFHYVLSMGAVFAIFGGFYYWFGKITGYC-YNEVYGKIHFWLMFIGV 423 (519)
T ss_pred chhhhHHhhcC----------------cchhhhhhHHHhHHHHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHH
Confidence 11233433322 23555663332 2223 35688999999999999 8999999998765322
Q ss_pred hhHhccccccc-cCCch----------hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 260 SYIVWLHHFFT-MGSGA----------NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 260 s~~vw~HHmf~-~g~~~----------~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
.......|... .|+|. ..+.+.++.+++..+-..+-++|.+.++.++|.+
T Consensus 424 ~l~f~pm~~~Gl~GmpRR~~~y~d~~~~~~~issiGa~I~~~g~llFi~nl~~S~~~~r~~ 484 (519)
T MTH00184 424 NLTFFPQHFLGLAGLPRRYSDFHDSFAGWNQISSLGSVISIVGVVWFIYIVYDAYVREIKF 484 (519)
T ss_pred HHHHHHHhhccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 23333344431 23222 2344455555555555555677888777766543
No 46
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=95.52 E-value=0.045 Score=61.11 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=86.6
Q ss_pred hHHHHHHHhhhhhhccccceeeccccc----ccccccceEEEeeeehhh--hhhHHHHHHHHHHHHhhhhccccC-Cchh
Q psy2379 313 PILWTIGFMITFVIGGMAGVILAVPAA----NFLLHNSLFLVAHFHNVI--IGGVLFGLMSGINYWFPKAFGYKL-EPFW 385 (585)
Q Consensus 313 p~lf~l~~i~~f~iGG~tGv~la~~~~----d~~~H~T~~VvaHfH~~l--~gg~~f~~~ag~yyw~Pkl~G~~~-~~~l 385 (585)
...+.+.+++.+.+||+-|++++..-. |..-.++|...=+.|..+ .+.+.....|..+|..|++.+|++ .+|+
T Consensus 6 ~~~yl~~a~~~l~ig~~~gl~~~l~r~~~~~~~~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~y~vp~~~~~~~~~prl 85 (473)
T cd01660 6 ALAHFVVAFLALLLGGLFGLLQVLVRTGVFPLPSSGILYYQGLTLHGVLLAIVFTTFFIMGFFYAIVARALLRSLFNRRL 85 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 345777888889999999885333221 111234555555555544 344555555766888899766765 8999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2379 386 GKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYR 454 (585)
Q Consensus 386 ~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~ 454 (585)
+..+||++.+|..+...+....+ . -.....|++..-++ ...+|-.+.++|.++...|++.++.
T Consensus 86 ~~~s~wl~~~g~~l~~~s~~~g~-~--~~~wt~Y~PL~~~~---~~~~g~~l~~~~s~l~~in~~~t~~ 148 (473)
T cd01660 86 AWAGFWLMVIGTVMAAVPILLGQ-A--SVLYTFYPPLQAHP---LFYIGAALVVVGSWISGFAMFVTLW 148 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-C--CCCceeCcCccccc---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877764433 1 22223454322111 1234666778888888889988753
No 47
>MTH00007 COX1 cytochrome c oxidase subunit I; Validated
Probab=95.48 E-value=0.94 Score=51.17 Aligned_cols=237 Identities=19% Similarity=0.213 Sum_probs=131.5
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHH-HHHHHHhhhcccCCccccc
Q psy2379 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGA-ILVMISLFIGEFASTGWLG 105 (585)
Q Consensus 27 l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~-~l~~~s~~~G~~~~~gWt~ 105 (585)
-||..|..++=.=|---++.+..|+ +|...-++|+..|.||. +-|.+ ...+. .+...|..+..
T Consensus 223 gdp~l~q~LFWffGHPeVYi~ilPa-~g~~~~ii~~~~~~~~~-~~~~~------~i~a~~~i~~l~~~Vw~-------- 286 (511)
T MTH00007 223 GDPILYQHLFWFFGHPEVYILILPG-FGAISHIVTHYAGKLEP-FGTLG------MIYAMLGIGVLGFIVWA-------- 286 (511)
T ss_pred CCceeehhhhhhccchhhHHHHHHH-HHHHHHhHHHhhCCcch-hHHHH------HHHHHHHHHHhhccccc--------
Confidence 3566788888777777888899998 78889999999996542 22222 11211 22233433321
Q ss_pred CCCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 106 YPPLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV 182 (585)
Q Consensus 106 YpPls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a 182 (585)
...+.+|.+.| +.-..-.+.++-|-+...|.+.|+.+.|- +++ -| ..|.... +..+.+-.+++-
T Consensus 287 -----HHmf~~g~~~~~~~~f~~~T~~iaiPtgikvF~w~~Tl~~~~i---~~~-~p-~~~~~~f---i~~F~~GG~tGv 353 (511)
T MTH00007 287 -----HHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIHGSPI---KYE-TP-MLWALGF---IFLFTTGGLTGI 353 (511)
T ss_pred -----cceeccCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCC---CCC-cH-HHHHHHH---HHHHHHhccchh
Confidence 22333333222 22233345566677778899999976542 222 23 3343322 223332232211
Q ss_pred -HHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhh---hhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHH
Q psy2379 183 -LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILV---LPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITL 258 (585)
Q Consensus 183 -~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~i---lPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ 258 (585)
+....+|..+.-+ .|-=||=...+.. ...++.+|+..|+.+||++. .|+..+.+|...+
T Consensus 354 ~la~~~~d~~lHdT----------------~~VvaHFH~vl~~g~v~~~~~g~~yw~P~~tGr~~~-~~l~~~~fwl~~i 416 (511)
T MTH00007 354 VLSNSSLDIILHDT----------------YYVVAHFHYVLSMGAVFAIFAAFNHWFPLFTGLTLH-DRWAKAHFFLMFL 416 (511)
T ss_pred hhcchhhhhhhcCc----------------eeeehhhhhhhhhhHHHHHHHHHhhhcccccceehh-HHHHHHHHHHHHH
Confidence 1112334443222 3555664333322 23356677779999999864 7999999876432
Q ss_pred -HhhHhccccccc-cCCc----------hhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 259 -LSYIVWLHHFFT-MGSG----------ANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 259 -ls~~vw~HHmf~-~g~~----------~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
........|... .|+| ...+.+.++.+.+..+-..+.++|...++.++|..
T Consensus 417 G~~~~f~p~~~~Gl~GmPRR~~~Y~~~~~~~n~~ssiGa~il~ig~llfi~nl~~Sl~~~r~a 479 (511)
T MTH00007 417 GVNLTFFPQHFLGLSGMPRRYSDYPDAYTKWNVVSSFGSMLSFVALLLFIFILWEAFSAQRGV 479 (511)
T ss_pred HHHHHHhHHHhhcccCCCceecCCCcHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 223344556553 3666 34555566666666665566777866666666543
No 48
>cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from
Probab=94.99 E-value=0.2 Score=55.70 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=59.5
Q ss_pred ccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCC
Q psy2379 30 EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFAS 100 (585)
Q Consensus 30 ~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~ 100 (585)
.|..+....|.-.++++.+....+|..+|..|++.|.+ . ..|+....+|++.+|..+...+....+.++
T Consensus 354 ~H~T~~vvaHfH~~l~g~~~~~~~g~~y~~~p~~~g~~-~-~~~l~~~~fwl~~iG~~~~~~~~~~~G~~G 422 (463)
T cd00919 354 LHDTYYVVAHFHYVLSGGVVFAIFAGLYYWFPKMTGRM-L-SEKLGKIHFWLWFIGFNLTFFPMHFLGLLG 422 (463)
T ss_pred hcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-c-cHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45667789999999999999999999999999999964 4 789999999999999999988887643344
No 49
>MTH00142 COX1 cytochrome c oxidase subunit I; Provisional
Probab=94.71 E-value=1.7 Score=49.13 Aligned_cols=238 Identities=17% Similarity=0.205 Sum_probs=129.0
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccC
Q psy2379 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGY 106 (585)
Q Consensus 27 l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Y 106 (585)
-||..|..++=.=|---++.+..|+ +|...-++|+..|.|.+ |-+.... + .-..+...|..+..
T Consensus 224 gd~~l~qhLFWffGHPeVYi~ilPa-~g~~~~i~~~~~~~~~~-f~~~~~v----~-a~~~i~~l~~~Vw~--------- 287 (511)
T MTH00142 224 GDPILYQHLFWFFGHPEVYILILPG-FGMISHIINHYSGKKEV-FGTLGMI----Y-AMLSIGLLGFIVWA--------- 287 (511)
T ss_pred CCeeeeeeeehhhcchhHHHHHHHH-HHHHHHHHHHHcCCCcc-chhHHHH----H-HHHHHHHHhhhhch---------
Confidence 3566677777777777788888998 78889999999987653 3333321 1 11222233433321
Q ss_pred CCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2379 107 PPLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV- 182 (585)
Q Consensus 107 pPls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a- 182 (585)
...+.+|.+.| +.-..-.+.++-|.+...|.+.|+.+.|-+ ++ +...|... .+..+.+-.+++-
T Consensus 288 ----HHmft~G~~~~~~~~f~~~t~~iaiPt~v~~f~w~~tl~~g~i~---~~--~p~l~~~~---fi~~F~~GG~tGv~ 355 (511)
T MTH00142 288 ----HHMFTVGMDVDTRAYFTAATMVIAVPTGIKVFSWLATLHGSKVK---YE--PPMLWALG---FIFLFTVGGLTGIV 355 (511)
T ss_pred ----hheeccCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC---CC--cHHHHHHH---HHHHHHhhcccccc
Confidence 22333333222 222233445666777888999999765532 22 23333332 2222222222211
Q ss_pred HHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHH---hhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHH--H
Q psy2379 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYI---LVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVI--T 257 (585)
Q Consensus 183 ~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi---~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i--~ 257 (585)
+....+|..+. +=.|-=||=.-.+ .+...++.+|+..|+.+||++ ++|+..+++|.. +
T Consensus 356 la~~~~d~~~H----------------dT~~VvaHFH~~l~~g~v~~~f~g~~yw~P~~tGr~~-~~~l~~~~f~~~~iG 418 (511)
T MTH00142 356 LANSSLDVVLH----------------DTYYVVAHFHYVLSMGAVFALFAGFIHWFPLFTGLTL-NPRWLKAHFYTMFIG 418 (511)
T ss_pred ccchhhhhhhc----------------cchhhccccceeeechHHHHHHHHHHHHHHhhcCccc-hHHHHHHHHHHHHHH
Confidence 11112333322 2235555632222 233456666777799999987 899999998765 3
Q ss_pred HHhhHhccccccccCCch----------hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 258 LLSYIVWLHHFFTMGSGA----------NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 258 ~ls~~vw~HHmf~~g~~~----------~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
+.......|=+=..|+|. ..+.+.++.+.+..+-...-++|.+-++.++|..
T Consensus 419 ~~~~f~p~h~lGl~GmPRR~~dY~~~~~~wN~isSiGs~I~~~g~llfl~~l~~S~~~~r~~ 480 (511)
T MTH00142 419 VNLTFFPQHFLGLAGMPRRYSDYPDAYTTWNVVSSLGSMISFIAVLMFVFIVWESFVSQRLV 480 (511)
T ss_pred HHHHhhhhhhccCCCCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 333333333332335443 3345555666665655556677877788777654
No 50
>MTH00223 COX1 cytochrome c oxidase subunit I; Provisional
Probab=94.35 E-value=1.6 Score=49.36 Aligned_cols=242 Identities=17% Similarity=0.215 Sum_probs=130.8
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccC
Q psy2379 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGY 106 (585)
Q Consensus 27 l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Y 106 (585)
-||..|..++=.=|-=-++.+..|+ +|...-++|...+.+ |+.+..+. ++.. ..+...|..+..
T Consensus 223 gdplL~qhLFWffGHPeVYi~ilPa-~g~~~~i~~~~s~~~----~~fg~~~~-v~~~-~~i~~l~~~Vw~--------- 286 (512)
T MTH00223 223 GDPILYQHLFWFFGHPEVYILILPG-FGMISHIVSHYSSKK----EVFGTLGM-IYAM-LSIGVLGFIVWA--------- 286 (512)
T ss_pred CCeehhhhhHHHccchhHHHHHHHH-HHHHHHHHHHhcCCc----chhHHHHH-HHHH-HHHHhheeEecc---------
Confidence 3566788887777777788889998 788888899776653 34444333 2111 222223333321
Q ss_pred CCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2379 107 PPLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV- 182 (585)
Q Consensus 107 pPls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a- 182 (585)
...+.+|.+.+ +.-..-.+..+-|-+...|.+.|+.+.|.+ + +.| ..|. .+.+..+..-.+++-
T Consensus 287 ----HHmf~~G~~~~~~~~f~~~T~~iaiPs~vkvf~w~atl~~g~~~---~-~~p-~~~~---l~fi~~F~~GG~tGv~ 354 (512)
T MTH00223 287 ----HHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIYGSKIK---Y-EAP-MLWA---LGFIFLFTVGGLTGII 354 (512)
T ss_pred ----cceeccCcchhHHHHHHHHHHHHHcchhHHHHHHHHHhcCCCCC---c-CcH-HHHH---HHHHHHHHhcccchhh
Confidence 23343333322 222223344566777788999999766543 2 334 3332 122223222222211
Q ss_pred HHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHH---hhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHH-H
Q psy2379 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYI---LVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVIT-L 258 (585)
Q Consensus 183 ~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi---~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~-~ 258 (585)
+....+|..+ .+=.|-=||=.-.+ .+...++.+|+-.||.+||++ ++|+..+.+|... -
T Consensus 355 ~a~~~~d~~~----------------HdT~~VvaHFH~vl~~g~v~~~f~g~~yw~P~~tGr~~-~~~l~~~~f~~~~iG 417 (512)
T MTH00223 355 LSNSSLDIML----------------HDTYYVVAHFHYVLSMGAVFALFAGFNHWFPLFTGVTL-HRRWAKAHFFLMFLG 417 (512)
T ss_pred ccchHHHhhh----------------hccchhhhhhHHHhhhhHHHHHHHHHHHHhhhhccchh-HHHHHHHHHHHHHHH
Confidence 0111223222 22345566633222 223456667777799999987 8999999987653 2
Q ss_pred HhhHhccccccc-cCCchh----------HHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchh
Q psy2379 259 LSYIVWLHHFFT-MGSGAN----------VNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVP 313 (585)
Q Consensus 259 ls~~vw~HHmf~-~g~~~~----------~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p 313 (585)
+.......|... .|+|.. .+.+.++.+.+..+-...-++|.+.++.++|...++|
T Consensus 418 ~~~~f~pmh~lGl~GmPRR~~~Yp~~~~~~n~issiGa~i~~~~~llfl~~l~~Sl~~gr~a~~~p 483 (512)
T MTH00223 418 VNLTFFPQHFLGLAGMPRRYSDYPDCYTKWNQVSSFGSMISFVSVLFFMFIVWEAFVSQRSVVWSG 483 (512)
T ss_pred HHHHHhHhhhhccCcCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 333444455542 243332 2344555555666656667788888888876654333
No 51
>MTH00182 COX1 cytochrome c oxidase subunit I; Provisional
Probab=94.04 E-value=0.8 Score=51.91 Aligned_cols=236 Identities=16% Similarity=0.203 Sum_probs=124.0
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||..|..++=.=|---++.+..| .+|..+.++|+..|.|.+ |-+.... .+-..+...|..+..
T Consensus 229 dp~L~qhLFWffGHPeVyi~ilP-a~g~~~~ii~~~s~~~~~-fg~~~~i-----~a~~~i~~l~~~Vw~---------- 291 (525)
T MTH00182 229 DPILFQHLFWFFGHPEVYILILP-GFGMISQIIPTFVAKKQI-FGYLGMV-----YAMLSIGILGFIVWA---------- 291 (525)
T ss_pred CcchhhhhHHhccCceEEEeccc-HHHHHHHHHHHHhCCCCC-cccHHHH-----HHHHHHHHHeeeecc----------
Confidence 45557776666566667777888 489999999999887654 3333221 011122233333321
Q ss_pred CCCCCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2379 108 PLSGIAQSPGVGV---DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV-L 183 (585)
Q Consensus 108 Pls~~~~~p~~~~---d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a-~ 183 (585)
...+..|.+. .+.-..-.+.++-|.+...|.+.|+.+.|.+ + + +...|.... +..+..-.+++. +
T Consensus 292 ---HHmf~~G~~~~~~~~f~~~T~~IavPt~ikvf~w~~Tl~gg~~~---~-~-~p~l~~~~f---i~~F~~GG~tGi~l 360 (525)
T MTH00182 292 ---HHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWLATIYGGTLR---L-D-TPMLWAMGF---VFLFTLGGLTGVVL 360 (525)
T ss_pred ---cceeccCCCchHHHHHHHHHHHHHhchHhHHHHHHHHhcCCCCC---C-C-hHHHHHHHH---HHHHhhcccCcccc
Confidence 1112112221 1222223445667777889999999765543 2 2 334444322 222222222211 1
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhhHH--HHhhh-hhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH-
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEV--YILVL-PVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLL- 259 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~V--yi~il-Pa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~l- 259 (585)
....+|..+.- =.|-=||=.- ..-.. ..+|.+|+..|+.+||+ ++.++...++|...+-
T Consensus 361 a~~~~d~~~Hd----------------T~~VVaHFH~vl~~g~~f~~~~g~yyw~P~~tGr~-~~~~l~~~~fwl~~iG~ 423 (525)
T MTH00182 361 ANSSLDIVLHD----------------TYYVVAHFHYVLSMGAVFAIFGGFYYWFGKITGYC-YNELYGKIHFWLMFIGV 423 (525)
T ss_pred cchhhhhhccc----------------CcchhchhhHHhHHHHHHHHHHHHHHHHHHHcCCc-hhhHHHHHHHHHHHHHH
Confidence 11223333322 2355566332 22222 35688999999999999 9999999998764322
Q ss_pred hhHhccccccc-cCCchh----------HHHHHHHHHHHHhhchhHHHHHHHHhhcCCcc
Q psy2379 260 SYIVWLHHFFT-MGSGAN----------VNAFFGITTMIISIPTGAKIFNWLFTMYRGRI 308 (585)
Q Consensus 260 s~~vw~HHmf~-~g~~~~----------~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i 308 (585)
.......|... .|+|.. .+...++.+.+..+-..+-++|.+.++.++|.
T Consensus 424 ~l~f~pm~~~Gl~GmPRR~~~y~~~~~~~n~issiGa~I~~~g~llFi~~l~~Sl~~~r~ 483 (525)
T MTH00182 424 NLTFFPQHFLGLAGFPRRYSDFADAFAGWNLVSSLGSIISIVGVVWFIYIIYDAYVREEK 483 (525)
T ss_pred HHHHhhhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23333344432 233322 23334455555544444566777777776654
No 52
>COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.11 Score=55.65 Aligned_cols=121 Identities=22% Similarity=0.261 Sum_probs=96.0
Q ss_pred ccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhh-cccCCcccccCCC
Q psy2379 30 EHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPP 108 (585)
Q Consensus 30 ~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~-G~~~~~gWt~YpP 108 (585)
.||-..-.-|.-.=..+|.....+|-.++++|++-|++++.++||-...||+..+|.++-..|..+ |..++-.|-.|.+
T Consensus 341 sHyTdwtiGHVH~GalgwV~~it~gsiY~~vPrl~~r~~mys~~Li~~hFWlatiGivlY~aaMwiaGi~QGLmwr~~~~ 420 (482)
T COG3278 341 SHYTDWTIGHVHAGALGWVGFITIGSIYHMVPRLFGRERMYSLRLVNAHFWLATIGIVLYIAAMWIAGITQGLMWRAYDE 420 (482)
T ss_pred hccccccccccccchhhHHHHHHHHHHHhhhHHHhCcccccchhhhHHHHHHHHHhHHHHHHHHHHHHHHhccchhhccC
Confidence 457777777888888899999999999999999999988999999999999999999999888876 7778888998887
Q ss_pred CCCCCCCC--C--chhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy2379 109 LSGIAQSP--G--VGVDYYI---WSLQIAGIGTLLSGINMIATIIKMRA 150 (585)
Q Consensus 109 ls~~~~~p--~--~~~d~~i---~~l~l~~vg~~l~~in~i~Ti~~~r~ 150 (585)
.-...||- . .-.+++. +|=.+...|.++.+.|+-.||...|+
T Consensus 421 ~G~L~ysFiesv~a~~Pyy~iR~vGG~~~l~G~llmayn~~~Ti~~~~~ 469 (482)
T COG3278 421 DGTLTYSFIESVVATHPYYVIRAVGGLLYLSGMLLMAYNIWMTIRGGKP 469 (482)
T ss_pred CCcEEeeHHHHHHHhchhHHHHHhccHHHHHHHHHHHHHHHHhhhcCCc
Confidence 75444432 1 1223332 34456678899999999999985544
No 53
>MTH00037 COX1 cytochrome c oxidase subunit I; Provisional
Probab=93.94 E-value=2.8 Score=47.45 Aligned_cols=238 Identities=16% Similarity=0.191 Sum_probs=128.4
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccC
Q psy2379 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGY 106 (585)
Q Consensus 27 l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Y 106 (585)
.||..|.+++=.=|---++.+..|+ +|..+-++|+..|.+|. |-|... ...-......|..+..
T Consensus 226 gdp~l~q~LFWffGHPeVYi~ilPa-~g~~~~ii~~~~~k~~~-f~~~~~-----v~a~~~i~~~~~~Vw~--------- 289 (517)
T MTH00037 226 GDPILFQHLFWFFGHPEVYILILPG-FGMISHVIAHYSGKQEP-FGYLGM-----VYAMIAIGILGFLVWA--------- 289 (517)
T ss_pred CCeehhhhHHHHhccchhhhhhccH-HHHHHHHHHHHhCCcch-hhhHHH-----HHHHHHHHHHhhhccc---------
Confidence 3566788877777777788888998 78888899999885443 222221 1111122233333321
Q ss_pred CCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2379 107 PPLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV- 182 (585)
Q Consensus 107 pPls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a- 182 (585)
...+.+|.+.| +.-..-.+.++-|-+...|.+.|+.+.|-+ + +.| ..|. .+.+..+..-.+++-
T Consensus 290 ----HHmf~~G~~~~~~~~f~~~T~~iavPt~vk~f~w~atl~~~~i~---~-~~p-~~~~---l~f~~~f~~GG~tGi~ 357 (517)
T MTH00037 290 ----HHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWMATLQGSNLR---W-ETP-LLWA---LGFVFLFTIGGLTGIV 357 (517)
T ss_pred ----cceeecCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCC---C-CcH-HHHH---HHHHHHHHhhccchhh
Confidence 22343433332 222233445666777888999999766543 2 234 3344 222233332222211
Q ss_pred HHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHh---hhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHH--H
Q psy2379 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYIL---VLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVI--T 257 (585)
Q Consensus 183 ~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~---ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i--~ 257 (585)
+....+|..+ .+=.|-=||=.-.+. +...++.+|+-.|+.+||++ ++|+...++|.. +
T Consensus 358 la~~~~d~~~----------------HdTy~VvaHFH~vl~~g~v~~~f~g~~yw~P~~tG~~~-~~~l~~~~f~l~~iG 420 (517)
T MTH00037 358 LANSSIDVVL----------------HDTYYVVAHFHYVLSMGAVFAIFAGFTHWFPLFSGVSL-HPLWSKVHFFLMFIG 420 (517)
T ss_pred hcchhhhhhh----------------ccchhhhcchhhhhhhhHHHHHHHHHHHhhhhhcCcch-hhHHHHHHHHHHHHH
Confidence 1111223222 223456666433322 23456666777799999987 899999998765 3
Q ss_pred HHhhHhccccccccCCch----------hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 258 LLSYIVWLHHFFTMGSGA----------NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 258 ~ls~~vw~HHmf~~g~~~----------~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
+.-.....|=+=-.|+|. ..+.+.++.+.+..+-...-++|.+-++.++|..
T Consensus 421 ~~~~f~p~h~lGl~GmPRR~~dYp~~~~~wN~isSiGs~I~~~~~llFi~~l~~Sl~~gr~v 482 (517)
T MTH00037 421 VNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSTISLVATLFFLFLIWEAFASQREV 482 (517)
T ss_pred HHHHHHHHhhcccCCCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 333333333332334443 2344455555555555555677877787777654
No 54
>MTH00116 COX1 cytochrome c oxidase subunit I; Provisional
Probab=93.03 E-value=2.5 Score=47.89 Aligned_cols=184 Identities=19% Similarity=0.270 Sum_probs=100.0
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||..|..++=.=|-=-++.+..|+ +|...-++|+..|.|+. | +..+.-... ..+...|..+..
T Consensus 227 dp~L~qhLFWffGHPeVYi~ilPa-~g~~s~ii~~~~~~~~~-f---g~~~~v~a~--~~i~~l~~~Vw~---------- 289 (515)
T MTH00116 227 DPILYQHLFWFFGHPEVYILILPG-FGIISHIVTYYAGKKEP-F---GYMGMVWAM--LSIGFLGFIVWA---------- 289 (515)
T ss_pred CcchhhhhhhhcccchhhhhhccH-HHHHHHHHHHHcCCCcc-h---hhHHHHHHH--HHHHHheeeecc----------
Confidence 455677777666666678888888 78889999999988753 2 322211111 122233333321
Q ss_pred CCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2379 108 PLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV-L 183 (585)
Q Consensus 108 Pls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a-~ 183 (585)
...+.+|.+.| +.-..-.+.++-|-+...|.+.|+.+.|-+ + +.| ..|.... +..+.+-.+++- +
T Consensus 290 ---HHmf~~G~~~~~~~~f~~~T~~iaiPt~vkvf~w~~tl~~g~~~---~-~~p-~l~~~~f---i~~F~~GG~tGv~l 358 (515)
T MTH00116 290 ---HHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIK---W-DPP-MLWALGF---IFLFTIGGLTGIVL 358 (515)
T ss_pred ---cccccCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC---C-CcH-HHHHHHH---HHHHHhcccchhhh
Confidence 22333333222 222233455667778888999999865533 2 234 3333322 333333333211 1
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHH---hhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHH
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYI---LVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVI 256 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi---~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i 256 (585)
....+|..+ .+=.|--||=.-.+ .+...++.+|+-.|+.+||+. ++|+..+.+|..
T Consensus 359 a~~~~d~~~----------------HdTy~VvaHFH~vl~~g~v~~~~~g~~yw~P~~~Gr~~-~~~l~~~~fw~~ 417 (515)
T MTH00116 359 ANSSLDIVL----------------HDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYTL-HQTWTKAQFGVM 417 (515)
T ss_pred cchhhhhhh----------------ccchhhhcchheeeehhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 111223322 22345566633222 222345556777999999985 999999998765
No 55
>MTH00103 COX1 cytochrome c oxidase subunit I; Validated
Probab=93.02 E-value=8.1 Score=43.80 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=125.5
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||..|.+++=.=|---++.+..|+ +|...-++|+..|.|++ |-|... .+. ...+...|..+..
T Consensus 227 dp~L~qhLFWffGHPeVYi~ilPa-~g~~s~ii~~~~~~~~~-f~~~~~----v~a-~~~i~~l~~~Vw~---------- 289 (513)
T MTH00103 227 DPILYQHLFWFFGHPEVYILILPG-FGMISHIVTYYSGKKEP-FGYMGM----VWA-MMSIGFLGFIVWA---------- 289 (513)
T ss_pred CchhhhhhHHHhccchhhhhhccH-HHHHHHHHHHHcCCCcc-hhhHHH----HHH-HHHHHHHhhhhch----------
Confidence 455677777666666778888888 78888999999988754 323222 111 1222333333321
Q ss_pred CCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2379 108 PLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVL- 183 (585)
Q Consensus 108 Pls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a~- 183 (585)
...+.+|.+.| +.-..-.+.++-|-+...|.+.|+.+.| .+++ +...|.. +.+..+..-.+++-.
T Consensus 290 ---HHmf~~G~~~~~~~~f~~~T~~IavPt~vk~f~w~atl~~g~---~~~~--~~~~~~l---~fi~~F~~GGitGv~l 358 (513)
T MTH00103 290 ---HHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGN---IKWS--PAMLWAL---GFIFLFTVGGLTGIVL 358 (513)
T ss_pred ---hheeccCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCC---CCCC--chHHHHH---HHHHHHHhcccchhhh
Confidence 12233332222 2222334456677777889999987554 3322 3344422 222222222222111
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhh--h-hhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHh
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILV--L-PVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLS 260 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~i--l-Pa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls 260 (585)
....+|.. ..+=.|-=||=.-.+.. . ..++..|+..|+.+||+ ++.|+..+.++...+--
T Consensus 359 a~~~~d~~----------------~HdTy~VvaHFH~vl~~g~v~~~~~~~y~w~p~~~G~~-~~~~l~~~~f~~~~ig~ 421 (513)
T MTH00103 359 ANSSLDIV----------------LHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYT-LNDTWAKIHFTIMFVGV 421 (513)
T ss_pred cchhhhhH----------------hhccHHHhhhhhhhhhhhHHHHHHHHHHHHHHhhcCcC-hHHHHHHHHHHHHHHHH
Confidence 11122222 23445677774333222 2 24688999999999997 57899999887653322
Q ss_pred -hHhccccccc-cCCch----------hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 261 -YIVWLHHFFT-MGSGA----------NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 261 -~~vw~HHmf~-~g~~~----------~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
......|... .|+|. ..|.+.++.+++..+-...-+++.+-++.++|..
T Consensus 422 ~~~f~p~~~~Gl~gmPRR~~~Yp~~~~~wN~isSiGs~Is~~~il~Fi~~lweS~~~~r~v 482 (513)
T MTH00103 422 NMTFFPQHFLGLSGMPRRYSDYPDAYTTWNTVSSMGSFISLTAVMLMIFMIWEAFASKREV 482 (513)
T ss_pred HHHHhHhhhccCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2223344442 34433 2344555555555444444556666666666543
No 56
>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional
Probab=91.17 E-value=14 Score=41.89 Aligned_cols=239 Identities=14% Similarity=0.146 Sum_probs=126.8
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccC
Q psy2379 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGY 106 (585)
Q Consensus 27 l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Y 106 (585)
-||..|..++=.=|---++.+..|+ +|...-++|...+.|. +.+..+. ..+-..+...|+.+..
T Consensus 224 gdp~L~qhLFWffGHPeVYi~iLPa-~g~~s~ii~~~s~~~~----~fg~~~~--v~a~~~i~~l~~~Vw~--------- 287 (511)
T MTH00048 224 GDPVLFQHMFWFFGHPEVYVLILPG-FGIISHICLSLSNNDD----PFGYYGL--VFAMFSIVCLGSVVWA--------- 287 (511)
T ss_pred CCeehhhhHHHHhccchheeecccH-HHHHHHHHHHhcCCcc----hhhhHHH--HHHHHHHHHHhccccc---------
Confidence 3566687777666667778888888 7888888998776543 3332221 1111122233333321
Q ss_pred CCCCCCCCCCCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2379 107 PPLSGIAQSPGVGVDY---YIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV- 182 (585)
Q Consensus 107 pPls~~~~~p~~~~d~---~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a- 182 (585)
-..+.+|.+.|. .-..-.+.++-+.+...|.+.|+.+.|.+ .+.|...|.... +..+.+-.+++-
T Consensus 288 ----HHmft~G~~~~~~~~f~~~T~~IavPt~ikvF~w~atl~~g~~~----~~~p~~l~~~~f---i~~F~~GG~tGv~ 356 (511)
T MTH00048 288 ----HHMFTVGLDVKTAVFFSSVTMIIGVPTGIKVFSWLYMLLNSRVR----KSDPVVWWVVSF---IVLFTIGGVTGIV 356 (511)
T ss_pred ----chhhccccChhHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCC----CCChHHHHHHHH---HHHHHHhccchHh
Confidence 233444443332 11222344555667778888888766553 234655555432 222222222211
Q ss_pred HHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHH---hhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH
Q psy2379 183 LFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYI---LVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLL 259 (585)
Q Consensus 183 ~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi---~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~l 259 (585)
+....+|..+. +=.|-=||=.-.+ .+...++.+|+..|+.+||++ .+|+....++...+-
T Consensus 357 la~~~~d~~~H----------------dTy~VvaHFH~vl~~g~v~~~~~~~~~w~P~~tG~~l-~~~l~~~~f~~~fiG 419 (511)
T MTH00048 357 LSASVLDNVLH----------------DTWFVVAHFHYVLSLGSYSSVVIMFIWWWPLITGLSL-NKYLLQCHCIISMIG 419 (511)
T ss_pred hhhhhhHHhhc----------------ccHhhhcchhhhhhhHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHH
Confidence 11112333322 2235555632222 223356889999999999876 588888887654322
Q ss_pred h-hHhccccccc-cCCch----------hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccc
Q psy2379 260 S-YIVWLHHFFT-MGSGA----------NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIR 309 (585)
Q Consensus 260 s-~~vw~HHmf~-~g~~~----------~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~ 309 (585)
- ......|... .|+|. +.+.+.++.+++..+-..+-++|.+-++.++|..
T Consensus 420 ~~~~f~p~h~lGl~GmPRR~~~y~~~~~~~N~iSSiGs~I~~ig~llFi~~l~~Sl~~gr~~ 481 (511)
T MTH00048 420 FNLCFFPMHYFGLCGLPRRVCVYEPSYYWINVVCTVGSFISAFSGCFFVFILWESLVVKNEV 481 (511)
T ss_pred HHHHHHHHHHHhhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 2 2333344432 23332 2344455566666665566778888888777554
No 57
>TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=90.34 E-value=1.4 Score=51.08 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=86.1
Q ss_pred hhHHHHHHHhhhhhhcc----ccceeecccc--c-ccccccceEEE--eeeehhhhhhHHHHHHHHHHHHhhhhcc-ccC
Q psy2379 312 VPILWTIGFMITFVIGG----MAGVILAVPA--A-NFLLHNSLFLV--AHFHNVIIGGVLFGLMSGINYWFPKAFG-YKL 381 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG----~tGv~la~~~--~-d~~~H~T~~Vv--aHfH~~l~gg~~f~~~ag~yyw~Pkl~G-~~~ 381 (585)
.-.++.+.++..+.+|| +-+.-|+.+. . ++.-.++|..+ +|==.++...+...++|-..|..|++.| |++
T Consensus 56 IG~~y~i~a~~~~l~Gg~~alliR~qL~~p~~g~~~~l~~~~Yn~i~T~HG~iMiFf~~mP~~~GfgN~lvPl~iGarDm 135 (646)
T TIGR02843 56 IGIMYIIVALVMLLRGFADAIMMRTQQALASGGSAGYLPPHHYDQIFTAHGVIMIFFVAMPFVFGLMNLVVPLQIGARDV 135 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 35567777888888898 5555555441 1 22212334444 5544444444555566666777899999 666
Q ss_pred -CchhhhHHHHHHHHHHHHHhhhhhhcccCCccccccc-ccchhHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q psy2379 382 -EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSH-FEDISLQ--IWFQIAAFGTLLIAMGILSFIIQLIVSYRK 455 (585)
Q Consensus 382 -~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~-y~~~~~~--~~~~i~siGa~i~~~g~llfv~nl~~Sl~~ 455 (585)
..|+.+..||+...|..+...++...+..|.-+..|. ....... +-.-....|-.+.++|-++-.+|++.++.+
T Consensus 136 aFPRLN~lSfWl~~~g~~l~~~S~~~g~~~~~GWT~YpPLs~~~~spg~~vd~~i~gl~l~gisSilgaiNfi~Ti~~ 213 (646)
T TIGR02843 136 AFPFLNSLSFWLTVVGAILVNVSLGVGEFAQTGWLAYPPLSELQYSPGVGVDYYIWALQISGIGTLLTGINFFVTIIK 213 (646)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhcccccCCCeeCCCCcCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999888876554443333211 0000011 011122345566666666667777777654
No 58
>PRK15017 cytochrome o ubiquinol oxidase subunit I; Provisional
Probab=90.33 E-value=1.4 Score=51.07 Aligned_cols=143 Identities=19% Similarity=0.218 Sum_probs=87.9
Q ss_pred hhHHHHHHHhhhhhhcc----ccceeec--cccc-ccccccceE--EEeeeehhhhhhHHHHHHHHHHHHhhhhcc-ccC
Q psy2379 312 VPILWTIGFMITFVIGG----MAGVILA--VPAA-NFLLHNSLF--LVAHFHNVIIGGVLFGLMSGINYWFPKAFG-YKL 381 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG----~tGv~la--~~~~-d~~~H~T~~--VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G-~~~ 381 (585)
.-.++.+.++..+.+|| +-+.-++ ..+. ++.-.++|. +.+|==.++...+...++|-..|..|++.| |.+
T Consensus 57 IGi~Y~i~a~~~~~~Gg~~alliR~qlal~~~~~~~~l~~~~Yn~~~T~HG~iMiFf~~mP~~~Gf~N~lvPl~iGarDm 136 (663)
T PRK15017 57 LGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDV 136 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 35567777888888998 4444444 2122 121122333 445554555555555567767788899999 666
Q ss_pred -CchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccch---hHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q psy2379 382 -EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDI---SLQ--IWFQIAAFGTLLIAMGILSFIIQLIVSYRK 455 (585)
Q Consensus 382 -~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~---~~~--~~~~i~siGa~i~~~g~llfv~nl~~Sl~~ 455 (585)
..|+....||+...|..+...++...+..+.-+.. |++. .+. +-.-..-+|-.+.++|.++-.+|++.++.+
T Consensus 137 afPrLN~lsfWl~~~g~~l~~~s~~~g~~~~~GWT~--YpPLs~~~~spg~~vd~~i~~l~l~gisSil~~iNfi~Ti~~ 214 (663)
T PRK15017 137 AFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLA--YPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILK 214 (663)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhhccccCCCcc--CCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988765543333322 2210 011 111223455666667777777888888765
Q ss_pred c
Q psy2379 456 R 456 (585)
Q Consensus 456 ~ 456 (585)
.
T Consensus 215 m 215 (663)
T PRK15017 215 M 215 (663)
T ss_pred h
Confidence 4
No 59
>MTH00079 COX1 cytochrome c oxidase subunit I; Provisional
Probab=87.68 E-value=1.7 Score=49.06 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=84.2
Q ss_pred hHHHHHHHhhhhhhcccccee----ecccccccccccceEEEeeeehhhhh-hHHHHH-HHHHH-HHhhhhcc-ccC-Cc
Q psy2379 313 PILWTIGFMITFVIGGMAGVI----LAVPAANFLLHNSLFLVAHFHNVIIG-GVLFGL-MSGIN-YWFPKAFG-YKL-EP 383 (585)
Q Consensus 313 p~lf~l~~i~~f~iGG~tGv~----la~~~~d~~~H~T~~VvaHfH~~l~g-g~~f~~-~ag~y-yw~Pkl~G-~~~-~~ 383 (585)
-.++.+.++..+++|+.-..+ ++.+..+..-.++|..+-=-|.++.. ..++.. ++|+- |..|++.| |++ .+
T Consensus 17 g~~Y~~~~~~~~~~G~~~sl~iR~eL~~pg~~~~~~~~Yn~~~T~HG~~Miff~vmp~~iggfgn~lvPl~lGa~dmafP 96 (508)
T MTH00079 17 GTLYFLFGLWSGMVGTSLSLIIRLELSKPGLLLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFP 96 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccch
Confidence 456667777777777775554 45555554445566666444544432 223343 45554 55699999 555 79
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchh--H--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS--L--QIWFQIAAFGTLLIAMGILSFIIQLIVSYRKR 456 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~--~--~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~ 456 (585)
|+.+..||+...|..+...++...+-.|.-+.. ||+.. . .+..-...++-.+.++|.++-..|++.++.+-
T Consensus 97 rln~~sfWl~~~~~~l~~~s~~~~~g~~~gWT~--YpPLs~~~~~~~~~d~~i~~l~l~gvsSil~~infi~Ti~~~ 171 (508)
T MTH00079 97 RLNNLSFWLLPTSLFLILDSCFVDMGPGTSWTV--YPPLSTLGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNL 171 (508)
T ss_pred hhhhHHHHHHhHHHHHHHHHhhcCcCccCCeeE--CCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988887665433332322 22111 0 11122333344555666666778888887543
No 60
>MTH00026 COX1 cytochrome c oxidase subunit I; Provisional
Probab=85.07 E-value=8.2 Score=43.98 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=73.6
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCC--cccccCCC
Q psy2379 31 HYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFAS--TGWLGYPP 108 (585)
Q Consensus 31 ~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~--~gWt~YpP 108 (585)
|.-.....|--.++.+.+....+|..+|..|++.|.+ . .+|+....||++.+|..+...+....+..+ --+..||+
T Consensus 371 HdT~~VVaHFH~vl~~g~vf~~~a~~yy~~P~~tGr~-~-~~~l~~~hfwl~~iG~~l~f~p~h~~G~~GmPRR~~~Yp~ 448 (534)
T MTH00026 371 HDTYYVVAHFHFVLSMGAVFAIFGGFYLWFGKITGYA-Y-KDIYGLIHFWLMFIGVNITFFPQHFLGLAGLPRRYADYPD 448 (534)
T ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC-c-cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcccccccc
Confidence 3444567888888888999999999999999999965 3 589999999999999999888876533221 11222222
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2379 109 LSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMR 149 (585)
Q Consensus 109 ls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r 149 (585)
- +++ +. ..--.|-.+.++|.++..+|+.-.+.+.|
T Consensus 449 ~----~~~-~N-~vsSiGs~i~~i~~llFl~~l~eS~~~~r 483 (534)
T MTH00026 449 N----FED-FN-QISSFGSIISIIAVIWFIVVIFDAYYREE 483 (534)
T ss_pred H----HHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 110 11 11223445556666666677777766544
No 61
>PF05940 NnrS: NnrS protein; InterPro: IPR010266 This family consists of several bacterial NnrS like proteins. NnrS is a putative haem-Cu protein (NnrS) and a member of the short-chain dehydrogenase family []. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem- and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase [].
Probab=84.90 E-value=63 Score=35.13 Aligned_cols=339 Identities=16% Similarity=0.196 Sum_probs=174.7
Q ss_pred CCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCccccc
Q psy2379 26 YLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLG 105 (585)
Q Consensus 26 ~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~ 105 (585)
..+.+.+..-..-|.--|+|++...++.||..=-+|.-.|++.+.-.++- ..+.++..|-+....+ +..
T Consensus 34 ~~~~~~~~~~~~wHaheMlfGf~~a~~aGFLlTA~p~Wtg~~~~~g~~l~-~l~~lWl~~r~~~~~~---~~~------- 102 (379)
T PF05940_consen 34 LLPLPSAVPPVWWHAHEMLFGFAGAFVAGFLLTAVPNWTGTPPISGRRLL-LLFALWLAARLAFLFG---GAL------- 102 (379)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCchHHHH-HHHHHHHHHHHHHHHH---hhh-------
Confidence 34444467778899999999999999999999999999998876433333 3445555555544333 110
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2379 106 YPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFL 185 (585)
Q Consensus 106 YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a~~~ 185 (585)
..+. +..+..+.......-+...++|.|++. +.. +...... +..+...
T Consensus 103 ---------------~~~~-~~~~~~~f~~~l~~~l~~~~~~~r~~r----~~~-~~~~l~~-----------l~~~~~~ 150 (379)
T PF05940_consen 103 ---------------PPWL-AAILDLAFWLLLAIFLARPLLRARNWR----NLG-FLPLLLA-----------LGAANLL 150 (379)
T ss_pred ---------------HHHH-HHHHHHHHHHHHHHHHHHHHHHccCcc----hhh-HHHHHHH-----------HHHHHHH
Confidence 0001 111112222233344444556666532 221 2211111 1111111
Q ss_pred hhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCCCCCCc-----hHHHHHHHHHHHHh
Q psy2379 186 STLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGY-----SSMVYATVVITLLS 260 (585)
Q Consensus 186 l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~kplfsy-----~~~v~a~~~i~~ls 260 (585)
...+ ..++|+-+ ...--+-.++....+...+---++|.|+++.+-++ +..-..........
T Consensus 151 ~~~~----------~~~~~~~~----~~~~~~~~l~~~~~li~~vggR~iP~Ft~~~l~~~~~~~~~~~~~~~~~~~~~~ 216 (379)
T PF05940_consen 151 FHLG----------LLGGDPDL----ARQGLRLALWLFLLLIFLVGGRMIPFFTRNALPTQGPRPPPWLENLALLLLLLA 216 (379)
T ss_pred HHHH----------HHcCChHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCCCCCccHHHHHHHHHHHHH
Confidence 1100 11222221 12233455666667766777789999987654431 11111111111111
Q ss_pred hHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHHhhhhhhccccceeecccccc
Q psy2379 261 YIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAAN 340 (585)
Q Consensus 261 ~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i~~f~iGG~tGv~la~~~~d 340 (585)
...+... + +. ..+-..+.+.++.. .+-.-=|+.....+.|+++.+-....++.-|+.-.-.+..
T Consensus 217 ~~~~~~~----~-~~-------~~~~~l~l~aa~~~-~~rl~~W~~~~~~~~pll~~Lhl~~~wl~~Gl~l~~~a~l--- 280 (379)
T PF05940_consen 217 LLLWLFA----P-NS-------PLAGALALAAALAH-LWRLARWRLWRILRRPLLWILHLGYAWLPLGLLLLGLAAL--- 280 (379)
T ss_pred HHHHHHc----c-hH-------HHHHHHHHHHHHHH-HHHHHhCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 1111111 0 11 11222233333332 2333346677777888988776544444333222211111
Q ss_pred cccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccC-CchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccc
Q psy2379 341 FLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKL-EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHF 419 (585)
Q Consensus 341 ~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~-~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y 419 (585)
.+...-.+=.|...+|+....+++..----=.=+||++ .+|..++.|++..++..+=.+ .+.
T Consensus 281 ---~~~~~~~~~lH~ltvG~~g~m~lammtRvslgHsGr~l~~~~~~~~a~~ll~~aallR~~--------------~~~ 343 (379)
T PF05940_consen 281 ---GGPVPSSAALHALTVGAMGTMILAMMTRVSLGHSGRPLVAPRWTIAAFLLLQLAALLRVV--------------APL 343 (379)
T ss_pred ---CccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHHHH--------------HHh
Confidence 22222334478888888887777765544433488987 568888888888877665432 122
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 420 EDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 420 ~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
.+ +.+...-.+.+.+-.++..+++.....-+.|.|
T Consensus 344 ~~---~~~~~~l~~aa~lW~~af~l~~~~y~p~l~~pR 378 (379)
T PF05940_consen 344 LP---GWYMLLLWLAAILWAAAFALWLWRYLPILLRPR 378 (379)
T ss_pred hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 333444566777888888899988887766543
No 62
>MTH00167 COX1 cytochrome c oxidase subunit I; Provisional
Probab=83.26 E-value=3 Score=47.24 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=81.8
Q ss_pred hHHHHHHHhhhhhhccccceee----cccccccccccceEEEeeeehhhhh-hHHH-HHHHHH-HHHhhhhcc-ccC-Cc
Q psy2379 313 PILWTIGFMITFVIGGMAGVIL----AVPAANFLLHNSLFLVAHFHNVIIG-GVLF-GLMSGI-NYWFPKAFG-YKL-EP 383 (585)
Q Consensus 313 p~lf~l~~i~~f~iGG~tGv~l----a~~~~d~~~H~T~~VvaHfH~~l~g-g~~f-~~~ag~-yyw~Pkl~G-~~~-~~ 383 (585)
-.++.+.++..+.+|+.-..+. +.+..+..-.++|..+-=-|.++.. ..++ .+++|+ +|..|++.| |++ ..
T Consensus 16 g~~Y~~~~~~~~~~G~~~s~liR~eL~~p~~~~~~~~~Yn~~~T~HG~~Miff~~mP~~~ggfgn~l~Pl~lga~dmafP 95 (512)
T MTH00167 16 GTLYFIFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFP 95 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccch
Confidence 4566666777777777754442 2222222222345544334544432 2232 234544 555699999 556 68
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchh-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS-----LQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKR 456 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~-----~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~ 456 (585)
|+.+..||+...|..+...++...|-.|.-+.. ||+.. -....-...++-.+.++|.++-.+|++.++++-
T Consensus 96 Rln~~sfWl~~~~~~l~~~s~~~~~g~~~gWT~--YpPLs~~~~~~~~~~d~~i~~l~l~gvsSil~~infi~Ti~~~ 171 (512)
T MTH00167 96 RMNNMSFWLLPPSLLLLLASSGVEAGAGTGWTV--YPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINM 171 (512)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCceE--CCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998887776654443332 22100 012223334444566666666677888887543
No 63
>MTH00077 COX1 cytochrome c oxidase subunit I; Provisional
Probab=82.46 E-value=4 Score=46.26 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=82.8
Q ss_pred hHHHHHHHhhhhhhccccceee----cccccccccccceEEEeeeehhhhh-hHHHHH-HHHH-HHHhhhhcc-ccC-Cc
Q psy2379 313 PILWTIGFMITFVIGGMAGVIL----AVPAANFLLHNSLFLVAHFHNVIIG-GVLFGL-MSGI-NYWFPKAFG-YKL-EP 383 (585)
Q Consensus 313 p~lf~l~~i~~f~iGG~tGv~l----a~~~~d~~~H~T~~VvaHfH~~l~g-g~~f~~-~ag~-yyw~Pkl~G-~~~-~~ 383 (585)
-.++.+.++..+.+||.-..+. +.+..|..-.++|...-=-|.++.. ..++.+ .+|+ .|..|++.| |++ .+
T Consensus 16 g~~Y~~~~~~~~~~g~~~a~liR~eL~~p~~~~~~~~~Yn~~~T~HG~~Mif~~~mp~~~ggfgn~lvPl~lGa~dmafP 95 (514)
T MTH00077 16 GTLYLVFGAWAGMVGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFP 95 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4566677777788887766543 2232222112234444334555432 222333 3544 556699999 656 78
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchh---H--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS---L--QIWFQIAAFGTLLIAMGILSFIIQLIVSYRK 455 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~---~--~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~ 455 (585)
|+.+..||+...|..+........+-.|.-+.. |++.. . .+..-..-+|-.+.++|.++-..|++.++.+
T Consensus 96 rlN~~sfWl~~~~~~ll~~s~~~~~g~~~gWT~--YpPLs~~~~~~g~~~d~~~~~l~l~gisSil~~iNfi~Ti~~ 170 (514)
T MTH00077 96 RMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTV--YPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSIN 170 (514)
T ss_pred hhhhhHHHHHhHHHHHHHHHHhccCCcCCCCee--CCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877777654433332322 32111 0 0222344566777777777778898888754
No 64
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=78.05 E-value=2.7 Score=43.25 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=34.7
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhc
Q psy2379 513 QDILMPKNTNIGILISIFSLIMGFALVWHM------WLLTIISFIITLIIVIYNTF 562 (585)
Q Consensus 513 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~ 562 (585)
++.|+|++|++|+.+|+..+.+..+++... ..+..+|++.++.++..|.-
T Consensus 1 h~~h~~~~SpWP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~W~~ 56 (258)
T PF00510_consen 1 HPYHLVDPSPWPILISLGLFFLLLGLVLFFHGSSSSSYLLLIGLILLLFSLFLWWR 56 (258)
T ss_dssp SSS------SHHHHHHHHHHHHHHHHHHHHTCS--STHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCccHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999988887433 45677888888888888764
No 65
>COG0843 CyoB Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]
Probab=73.58 E-value=7.5 Score=44.39 Aligned_cols=145 Identities=22% Similarity=0.322 Sum_probs=89.3
Q ss_pred chhHHHHHHHhhhhhhccc-ccee---ecccc-ccccc--ccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc-C-
Q psy2379 311 EVPILWTIGFMITFVIGGM-AGVI---LAVPA-ANFLL--HNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK-L- 381 (585)
Q Consensus 311 ~~p~lf~l~~i~~f~iGG~-tGv~---la~~~-~d~~~--H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~-~- 381 (585)
+.-.++.+.+++.+..||. ++.+ ++.++ .|..- |....+.+|==.++...+..++.|-.+|.+|++-|.+ .
T Consensus 18 ~Igi~Y~i~a~~~~l~gg~~a~~mR~~la~p~~~~~l~~~~Yn~~~T~HGviMif~~~~p~i~Gf~n~~vpl~iGa~d~a 97 (566)
T COG0843 18 DIGILYLILAIFFLLVGGALALLMRLELATPSGSQFLDPQLYNQILTLHGVIMIFFFAMPAIGGFANYLVPLMIGARDVA 97 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence 3456788888888888764 4443 45553 33222 2333455666666666666665557788889999854 4
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhhhcccCCccccc-ccccch---hH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q psy2379 382 EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM-SHFEDI---SL-QIWFQIAAFGTLLIAMGILSFIIQLIVSYRKR 456 (585)
Q Consensus 382 ~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~-~~y~~~---~~-~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~ 456 (585)
-+|+..+.||+..+|..+......+-|- .|+-- .-|++. +. .+-.-..-+|..+..+|.++--+|++.++.+.
T Consensus 98 fPrlN~isFWl~~~g~~ll~~s~~v~gg--~~~~GWt~YpPLs~~~~sg~g~dl~~~~l~l~gi~s~l~~infivTi~~m 175 (566)
T COG0843 98 FPRLNAISFWLLVVGAILLVTSFFVPGG--AADTGWTAYPPLSAISYSGPGVDLFILGLHLLGIGSLLGAINFIVTILNM 175 (566)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCcceEecCCcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999998777777666432 22221 124321 11 12222345566667777777778888887654
Q ss_pred c
Q psy2379 457 H 457 (585)
Q Consensus 457 ~ 457 (585)
|
T Consensus 176 R 176 (566)
T COG0843 176 R 176 (566)
T ss_pred h
Confidence 4
No 66
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=70.96 E-value=40 Score=37.55 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=34.9
Q ss_pred HHHHHhhchhHHHHHHHHhhcCCccccchhH-HHHHHHhhhhhhccccceeec
Q psy2379 284 TTMIISIPTGAKIFNWLFTMYRGRIRFEVPI-LWTIGFMITFVIGGMAGVILA 335 (585)
Q Consensus 284 ~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~-lf~l~~i~~f~iGG~tGv~la 335 (585)
.++.++.|.-+.++.++.- .+|+.+++.-. .|.-.+.+.|.+|.+||+.+.
T Consensus 17 v~~tiGl~~~~~i~e~~~~-rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~ 68 (436)
T PF01654_consen 17 VPLTIGLALLLAILETLYY-RTGDPRYDRLARFWGKLFAINFAVGVVTGTVME 68 (436)
T ss_pred HHHHHHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666667776664 45555555444 466678899999999999876
No 67
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=68.61 E-value=9.3 Score=39.53 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=35.8
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|+..+.+..+++-.. ..+..+|++.++.++..|.
T Consensus 8 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 59 (262)
T MTH00052 8 PYHLVDPSPWPYIGGCGALFTTVGGVMYFHYSQSWVLILGLITIIFTMVVWW 59 (262)
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888886222 2345567777777777664
No 68
>MTH00024 COX3 cytochrome c oxidase subunit III; Validated
Probab=67.38 E-value=13 Score=38.49 Aligned_cols=48 Identities=4% Similarity=-0.025 Sum_probs=36.4
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|+..+.+..+++-.. ..+..+|++..+.++..|.
T Consensus 7 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 58 (261)
T MTH00024 7 PYHLVEPSPWPFLGAGGAFFITVGSVVYFHYGFSFILYLGLLVIVGVMFVWW 58 (261)
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999998888886322 3345567777777777764
No 69
>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional
Probab=65.82 E-value=13 Score=38.23 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=36.6
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNTF 562 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~ 562 (585)
+-|++++|+||+.+|...+.+..+++... ..+..+|++.++.++..|.-
T Consensus 5 ~~h~~~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~r 57 (259)
T MTH00141 5 PFHLVEFSPWPLTGSIGALFLTVGLVSWFHGGSFLLLVLGLVLIVLTMFQWWR 57 (259)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888886322 22455677777777777753
No 70
>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional
Probab=64.15 E-value=17 Score=37.45 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=38.0
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 512 FQDILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+++-|++++|+||+.+|+..+.+..+++-.. ..+..+|++.++.++..|.
T Consensus 2 ~~~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 55 (256)
T MTH00083 2 FHNFHILSLSSYPYMMFFSSLGLTSSLVVFFKYGLFYSFFFSLLYLLFISFLWG 55 (256)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999988888886322 2355677777777777774
No 71
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=62.41 E-value=16 Score=37.55 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=37.1
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNTF 562 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~ 562 (585)
+-|++++|++|+.+|+..+.+..+++... ..+..+|++.++.+...|.-
T Consensus 5 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 57 (255)
T MTH00155 5 PFHLVDYSPWPLTGSIGAMTLTSGLIKWFHQFNMNLLILGLIITLLTMFQWWR 57 (255)
T ss_pred CCcCCCCCccHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999998888886433 23455777777777777743
No 72
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=61.62 E-value=18 Score=37.48 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=36.5
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 513 QDILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 513 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
++-|++++|+||+.+|+..+.+..+++-.. ..+..+|++.++.++..|.
T Consensus 5 ~~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 57 (260)
T MTH00039 5 HPYHLVDQSPWPLTAAIGALIMTSGLVLWFHGDSILLLLLGLLLLILTSINWW 57 (260)
T ss_pred CCCccCCCCccHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999988888885322 2345567777777777774
No 73
>PF11070 DUF2871: Protein of unknown function (DUF2871); InterPro: IPR021299 This family of proteins has no known function.
Probab=60.40 E-value=5 Score=37.26 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=68.1
Q ss_pred ccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchh
Q psy2379 344 HNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDIS 423 (585)
Q Consensus 344 H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~ 423 (585)
-.|.--+.|-|+-++|.+.|-+ -+.+-|.++-. ++|.-|.-+|.+-+|..++...|..=|..-.-++..+ +
T Consensus 33 g~T~Ls~vHtHllvLG~~~fLi----~~ll~k~f~l~-~~k~f~~f~~~YniGl~~t~~mm~vrGi~qV~g~~~~--~-- 103 (132)
T PF11070_consen 33 GKTQLSVVHTHLLVLGMIFFLI----LLLLEKNFDLS-KNKKFKKFFIVYNIGLVLTVGMMLVRGILQVLGSELS--N-- 103 (132)
T ss_pred CeeeehhHHHHHHHHHHHHHHH----HHHHHHHhhhh-hccccCeEEEEEehhHHHHHHHHHHHHHHHHcCCCCc--h--
Confidence 4688889999998877665543 34455644332 2355678899999999999999999996433333221 2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2379 424 LQIWFQIAAFGTLLIAMGILSFIIQLIV 451 (585)
Q Consensus 424 ~~~~~~i~siGa~i~~~g~llfv~nl~~ 451 (585)
.-..-++.+|-.++.+|.+.+...+-+
T Consensus 104 -~~isGiAGlGHI~l~vgli~l~~~l~k 130 (132)
T PF11070_consen 104 -AAISGIAGLGHILLGVGLILLFVALKK 130 (132)
T ss_pred -HHHHhhhhHhHHHHHHHHHHHHHHHHh
Confidence 233457788889999998888776643
No 74
>MTH00099 COX3 cytochrome c oxidase subunit III; Validated
Probab=56.31 E-value=29 Score=35.89 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=36.2
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|++|+.+|...+....+++... +....++++.++.++..|.
T Consensus 7 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 58 (261)
T MTH00099 7 AYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSTTLLTLGLLTNMLTMYQWW 58 (261)
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888886333 2345567777777777764
No 75
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=55.22 E-value=35 Score=35.29 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=35.5
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|...+....+++... .....++++..+.++..|.
T Consensus 7 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 58 (261)
T MTH00075 7 AFHMVDPSPWPLTGAIAALLLTSGLAMWFHFGSMIIMLLGLIIMLLTMFQWW 58 (261)
T ss_pred CCcCCCCCccHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999998888886322 2335566777777776664
No 76
>MTH00009 COX3 cytochrome c oxidase subunit III; Validated
Probab=55.16 E-value=27 Score=36.06 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=35.4
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|+..+.+..+++... ..+..++++.++.++..|.
T Consensus 5 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 56 (259)
T MTH00009 5 PFHLVEYSPWPLTGSIGAFTLTVGLASWFHGYGTLCLILGLIIIILTMIQWW 56 (259)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888886332 2245566777777777664
No 77
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional
Probab=54.88 E-value=32 Score=35.60 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=35.6
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|++|+.+|...+....+++... +....++++..+.++..|.
T Consensus 7 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 58 (261)
T MTH00118 7 PYHMVDPSPWPLTGAMAALLLTSGLAMWFHYNSTTLLKLGLLSMLLTMLQWW 58 (261)
T ss_pred CCcCCCCCccHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999888886433 2235566666677766664
No 78
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=54.30 E-value=26 Score=36.19 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=35.8
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|+..+....+++... ..+..+|++.++.++..|.
T Consensus 6 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 57 (260)
T MTH00189 6 PFHLVDPSPWPLTGAIAALLLTSGLAMWFHYNSFILLFLGLILLLLTMIQWW 57 (260)
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999988888886333 2235567777777777774
No 79
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=54.24 E-value=25 Score=36.34 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=36.5
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNTF 562 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~ 562 (585)
+-|++++|+||+.+|+..+.+..+++.-. .....+|++.++.++..|.-
T Consensus 7 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 59 (261)
T MTH00130 7 AYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTTLMTLGLILLLLTMYQWWR 59 (261)
T ss_pred CCcCCCCCccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888886322 22355677777777777743
No 80
>MTH00219 COX3 cytochrome c oxidase subunit III; Provisional
Probab=52.02 E-value=30 Score=35.78 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=35.4
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM----WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|+..+....+++-.. ..+..+|++.++.++..|.
T Consensus 8 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 59 (262)
T MTH00219 8 PYHLVDYSPWPLTGSLGALMLTSGLVAWFHHYNLDLLILGLLIIVLTMIQWW 59 (262)
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888885322 2235567777777777664
No 81
>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional
Probab=50.57 E-value=42 Score=35.45 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=36.3
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHh
Q psy2379 513 QDILMPKNTNIGILISIFSLIMGFALVW--H--MWLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 513 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~ 561 (585)
++-|++++|+||+.+|...+.+..+++. | ...+..+|++.++.++..|.
T Consensus 6 ~~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 58 (297)
T MTH00028 6 HPYHLVDPSPWPFVGASGAFLFTSGAVILFHYSDYRLALTGLFLIIITASAWW 58 (297)
T ss_pred CCCccCCCCccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999888888752 3 12345677777777777664
No 82
>PLN02194 cytochrome-c oxidase
Probab=48.20 E-value=42 Score=34.82 Aligned_cols=48 Identities=17% Similarity=-0.011 Sum_probs=35.5
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q psy2379 514 DILMPKNTNIGILISIFSLIMGFALVWHM------WLLTIISFIITLIIVIYNT 561 (585)
Q Consensus 514 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~ 561 (585)
+-|++++|+||+.+|+..+.+..+++--. ..+..+|++.++.++..|.
T Consensus 8 ~~h~v~~SpwP~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 61 (265)
T PLN02194 8 SYHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGARLLSLGLIFILYTMFVWW 61 (265)
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988888875222 2345567777777777664
No 83
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=31.01 E-value=1.7e+02 Score=25.82 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=18.0
Q ss_pred cccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2379 412 VTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQL 449 (585)
Q Consensus 412 mpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl 449 (585)
.-||..|-.-++|..+......+.++-.++.+.+++.+
T Consensus 66 ~vRRlhD~G~sg~~~~~~~~~~~~~ip~i~~i~~l~l~ 103 (120)
T PF05656_consen 66 TVRRLHDIGRSGWWILLPFVLLALLIPIIGIIVLLYLL 103 (120)
T ss_pred HhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46887776433443333333334444445554444433
No 84
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=27.10 E-value=3.4e+02 Score=26.46 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=43.7
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
.++.+-..||..++. ..+|..|.-.| +.. |..+.++++.-.-.-|.+.+.+ ++++.++|..+-.+-.
T Consensus 92 ~~~~L~~lGG~~~~~--------~~~~~lf~spH--~~~-Gl~~~~L~~~s~al~~~i~~g~-~~~~R~lHi~lN~~~l- 158 (175)
T PF13301_consen 92 AFMGLGALGGQLGTY--------RQNGKLFWSPH--LWA-GLAVVGLMAFSAALVPQIQKGN-RPWARRLHIYLNSLAL- 158 (175)
T ss_pred HHHHHHHHcchHHHH--------HcCCCCccCch--HHH-HHHHHHHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHH-
Confidence 344444555554443 12223344444 444 3345566666566668876433 4578899988877765
Q ss_pred HHhhhhhhccc
Q psy2379 399 VAFMPLYILGF 409 (585)
Q Consensus 399 l~f~pm~~~Gl 409 (585)
+.|.-+-++|.
T Consensus 159 ~Lf~~q~itG~ 169 (175)
T PF13301_consen 159 LLFAWQAITGW 169 (175)
T ss_pred HHHHHHHHHHH
Confidence 44455666663
No 85
>COG5346 Predicted membrane protein [Function unknown]
Probab=25.09 E-value=2e+02 Score=26.49 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCC
Q psy2379 523 IGILISIFSLIMGFALVWHMWLLTIISF----IITLIIVIYNTFNYKR 566 (585)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~ 566 (585)
...+...+..++|+++||.+|--.+.|+ +++++......+++|.
T Consensus 86 ~~~~tril~liFgi~LVvsi~~~tla~~~~Gtv~alAlaFv~~~S~~q 133 (136)
T COG5346 86 YAKLTRILLLIFGIFLVVSIFPKTLASLAGGTVFALALAFVIGRSRDQ 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhhhhhc
Confidence 5678889999999999999997655443 3344433333344443
No 86
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=24.45 E-value=3.5e+02 Score=27.55 Aligned_cols=43 Identities=16% Similarity=0.420 Sum_probs=24.9
Q ss_pred HhhhhhH-HHHHHHHhhhcCCCCCCchHHHHHHHHHHHHhhHhcc
Q psy2379 222 ILVLPVF-GIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWL 265 (585)
Q Consensus 222 i~ilPa~-gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls~~vw~ 265 (585)
+..+-+. |+..-.+=|+++.=+.++ ....+++..+++|....-
T Consensus 187 ~i~~~a~gGllva~v~KyadnI~K~f-a~a~siv~t~~~s~~lf~ 230 (244)
T PF04142_consen 187 VIFLQAIGGLLVAFVLKYADNIVKGF-ATAVSIVLTAVLSVLLFG 230 (244)
T ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 3444454 777777778887644333 234455666666655543
No 87
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=21.10 E-value=4e+02 Score=31.11 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=77.1
Q ss_pred ccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhc-C----Cccc---------cchhHHHHHHHhhhhhhccccc
Q psy2379 266 HHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMY-R----GRIR---------FEVPILWTIGFMITFVIGGMAG 331 (585)
Q Consensus 266 HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~-~----g~i~---------~~~p~lf~l~~i~~f~iGG~tG 331 (585)
-|+-..+.++...+.....|.+|-.=.++..+.|+..-. + -|+. .+..+++....+.+|.+-++-|
T Consensus 192 Ph~pli~n~~~~~~~~wsi~svilLl~~i~l~~wv~~~~~dhee~~~~~~~P~~k~~sQkva~lyf~~A~~Lf~vQiLlG 271 (717)
T COG3256 192 PHEPLIGNPPTTVNYMWSITSVILLLVGIALLLWVYLKLTDHEEVPRPSEDPPLKYQSQKVALLYFFLAVALFVVQILLG 271 (717)
T ss_pred CCCcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344334444444444444444444556777777774322 1 1332 3345566777888888877777
Q ss_pred eeeccccccccc----ccceEEE------eeeehhhhhhHHHHHHHHHHHHhhhhcc----ccCCchhhhHHHHHHHHHH
Q psy2379 332 VILAVPAANFLL----HNSLFLV------AHFHNVIIGGVLFGLMSGINYWFPKAFG----YKLEPFWGKCSFWFWLIGF 397 (585)
Q Consensus 332 v~la~~~~d~~~----H~T~~Vv------aHfH~~l~gg~~f~~~ag~yyw~Pkl~G----~~~~~~l~~~~fwl~~iG~ 397 (585)
...+..-++=.- --..+.+ =|.... +.+..++.+++-+|..|...+ |.+|.++.-..||....-.
T Consensus 272 ~~~~hyyVege~fyGI~l~~~LPfni~R~~H~nla-vvWIa~~wlaa~lyllP~~~~pk~~~l~s~~L~~al~~v~~gs~ 350 (717)
T COG3256 272 GLTAHYYVEGEGFYGIPLAQVLPFNITRTVHTNLA-VVWIATGWLAAGLYLLPELGGPKFQELGSPKLLIALFFVVVGSL 350 (717)
T ss_pred HHheeeEeccccccCcchhhhccHHHHHHHHHhHH-HHHHHHHHHHHHHHhhhhhcCchhhhhccHHHHHHHHHHHHHHH
Confidence 766543332110 0000000 023333 477889999999999999988 3457888888888765444
Q ss_pred HHHh
Q psy2379 398 YVAF 401 (585)
Q Consensus 398 ~l~f 401 (585)
....
T Consensus 351 ~g~~ 354 (717)
T COG3256 351 AGAW 354 (717)
T ss_pred HHHH
Confidence 4433
Done!