Query psy2379
Match_columns 585
No_of_seqs 289 out of 2074
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fft_A Ubiquinol oxidase; elec 100.0 3E-160 9E-165 1337.8 38.9 583 2-584 69-652 (663)
2 2yev_A Cytochrome C oxidase po 100.0 3E-141 1E-145 1214.8 0.0 561 1-572 38-608 (791)
3 1v54_A Cytochrome C oxidase po 100.0 9E-134 3E-138 1105.7 41.6 484 2-492 27-512 (514)
4 2gsm_A Cytochrome C oxidase su 100.0 2E-131 5E-136 1094.3 37.4 482 2-492 41-558 (566)
5 3s8f_A Cytochrome C oxidase su 100.0 9E-108 3E-112 904.0 34.1 436 2-460 39-506 (569)
6 3mk7_A Cytochrome C oxidase, C 100.0 6E-101 2E-105 839.7 27.0 429 2-466 25-470 (474)
7 3o0r_B Nitric oxide reductase 100.0 2.1E-83 7.2E-88 698.1 25.3 405 2-452 27-461 (465)
8 3ayf_A Nitric oxide reductase; 100.0 1.2E-79 4E-84 700.9 20.9 419 2-458 316-769 (800)
9 3o0r_B Nitric oxide reductase 97.2 0.0085 2.9E-07 65.1 17.4 223 204-457 49-299 (465)
10 3mk7_A Cytochrome C oxidase, C 96.7 0.0033 1.1E-07 68.5 8.6 133 312-457 13-153 (474)
11 2gsm_A Cytochrome C oxidase su 96.4 0.12 4.1E-06 57.4 19.2 239 28-313 271-529 (566)
12 1fft_A Ubiquinol oxidase; elec 95.8 0.01 3.5E-07 66.9 6.5 143 312-457 57-216 (663)
13 1v54_A Cytochrome C oxidase po 95.7 0.43 1.5E-05 52.4 19.1 236 28-308 227-481 (514)
14 3ayf_A Nitric oxide reductase; 95.2 0.017 5.9E-07 66.5 5.9 133 312-455 304-458 (800)
15 1v54_C Cytochrome C oxidase po 95.0 0.013 4.4E-07 59.0 3.5 55 512-566 5-63 (261)
16 1m56_C Cytochrome C oxidase; m 94.3 0.025 8.6E-07 57.0 3.9 56 512-567 6-65 (266)
17 3s8f_A Cytochrome C oxidase su 93.9 0.07 2.4E-06 59.3 6.8 140 312-457 27-178 (569)
18 1qle_C Cytochrome C oxidase po 92.2 0.037 1.3E-06 56.0 1.1 56 512-567 5-72 (273)
19 2yev_A Cytochrome C oxidase po 88.4 0.082 2.8E-06 61.0 0.0 143 313-457 28-182 (791)
No 1
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1
Probab=100.00 E-value=2.7e-160 Score=1337.77 Aligned_cols=583 Identities=65% Similarity=1.231 Sum_probs=471.7
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|++||+||+.|+.+.+.+++++.|||++|+||++|+|++++|+++|++||++|+|+|+||++|||+|++|||+
T Consensus 69 ~lvG~~~slliR~eL~~P~~~~~~~~~~~~Yn~i~T~Hg~iMIFf~vmp~~~Gfgn~lvPl~lga~dmafPrLn~~sfWl 148 (663)
T 1fft_A 69 LLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWF 148 (663)
T ss_dssp HHHHHHHHHHHTTTTTSSSSCTTCCCSTHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHhHHHHHHHH
Confidence 68999999999999999973222577889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIF 161 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf 161 (585)
++.|.+++..|.+.|+++++|||.|||||+++|+|+.++|++++|++++++||+++++||++||.|||+|||+++|||+|
T Consensus 149 ~~~~~~l~~~S~~~g~g~~tGWT~YpPLs~~~~~~g~~vd~~i~~l~l~gvssil~aiNfi~Ti~~mr~~gm~~~~~plf 228 (663)
T 1fft_A 149 TVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVF 228 (663)
T ss_dssp HHHHHHHHHHHHTTTCCCCSTTTTCTTTSSCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCeeecCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCC
Q psy2379 162 TWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241 (585)
Q Consensus 162 ~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~k 241 (585)
+|+.++|++++++++|+++++++|++.||++|++||+|.+||||++||||||+|||||||++++|++|++||++|+++||
T Consensus 229 ~W~~l~Ta~LlllslPvLa~al~mLl~dr~~~t~ff~p~gGgdpiL~qhLFWffGHPeVYililPafGiis~iip~~s~k 308 (663)
T 1fft_A 229 TWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSRK 308 (663)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCSSCTTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHHh
Q psy2379 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFM 321 (585)
Q Consensus 242 plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i 321 (585)
|+|||+.+++|+++++++|+.||+||||++|+|.+.|++|+++||+|++||++|+|||++|+++||+|+++|++|+++|+
T Consensus 309 ~lfgy~~mi~A~~~i~~lgf~Vw~HHmft~G~~~~~~~~f~~~TmiIaVPtgikvFnwl~Tl~gg~i~~~~pml~~lgfi 388 (663)
T 1fft_A 309 RLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFI 388 (663)
T ss_dssp CCSSHHHHHHHHHHHHHTTSSCGGGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCCCCSHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHhhhceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHh
Q psy2379 322 ITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAF 401 (585)
Q Consensus 322 ~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f 401 (585)
++|++||+||+++|++++|.++|||||||||||+++++|++|+++||+|||+||++||++|||++|+|||++++|++++|
T Consensus 389 ~~F~iGGltGv~la~~~~d~~lHdTy~VVAHFHyvl~gg~vf~~~ag~~yw~P~~tG~~l~~~l~k~~Fwl~fiG~~l~f 468 (663)
T 1fft_A 389 VTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAF 468 (663)
T ss_dssp HHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHhhcccchhhhhccceeEEeeeeehhHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCCCC
Q psy2379 402 MPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPPP 481 (585)
Q Consensus 402 ~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sPPp 481 (585)
+|||++|++|||||++||+|+++++||.++++||+++.+|+++|++|+++|+++||+.++.++|||+++||||+++||||
T Consensus 469 ~pmh~lGl~GmpRR~~~y~d~~~~~~n~issiG~~i~~ig~llfl~~l~~Sl~~~r~~~~~~~~pw~~~tLEW~~~sPPp 548 (663)
T 1fft_A 469 MPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPP 548 (663)
T ss_dssp HHHHHHHHTTCBTTCSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCSCSSCTTCCCTTTTSCSSCC
T ss_pred HHHHHHHhhceeecccCCCcchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCChhhccCCCCC
Confidence 99999999999999999987789999999999999999999999999999999887655557799999999999999999
Q ss_pred CCCCCcCcccccCChhhhhccCCCCCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 482 VYNFAFIPLIHQSDSWWYMKKNNFKFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIVIYN 560 (585)
Q Consensus 482 ~~nf~~~P~V~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 560 (585)
+|||+|+|.+++|||+|++|+++++++ +++|++||||+||++|+++|++.++++|+++||+||++++|+++++++++.|
T Consensus 549 ~hnF~e~P~v~~~~~~w~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (663)
T 1fft_A 549 FYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVK 628 (663)
T ss_dssp TTCC----------------------------------------------------------------------------
T ss_pred ccCCccCCeecccchHHhhhhcccccccccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886654 6789999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccChhhHHhhHHhhhc
Q psy2379 561 TFNYKRNYYISSEEITCIEKKRIR 584 (585)
Q Consensus 561 ~~~~~~~~~i~~~~v~~~e~~~~~ 584 (585)
+|++|+||++|+||+||+|+++.+
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~ 652 (663)
T 1fft_A 629 SFDEDVDYYVPVAEIEKLENQHFD 652 (663)
T ss_dssp ------------------------
T ss_pred HhcCCCCCCCCHhHHHHHHHHHHH
Confidence 999999999999999999987653
No 2
>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-141 Score=1214.76 Aligned_cols=561 Identities=33% Similarity=0.681 Sum_probs=536.4
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCccccchhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPL-VTGIINFIVPLQIGARDVAFPFLNNLSF 79 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~-~~g~~ny~vPl~igard~a~Prln~~sf 79 (585)
++++|+++|++||+||+.|+. .+.+++.|||++|+||++|+|++++|+ ++|++||++|+|+|+||++|||+|++||
T Consensus 38 ~~~~G~~~~~liR~el~~p~~---~~~~~~~Yn~~~T~Hg~~Mif~~~mp~~~~gf~n~lvPl~lga~dmafprln~~sf 114 (791)
T 2yev_A 38 AFALAGVFSLLIRTQLAVPNN---QFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSY 114 (791)
Confidence 468999999999999999974 567899999999999999999999999 8899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhh-cccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q psy2379 80 WMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNM 158 (585)
Q Consensus 80 wl~~~g~~l~~~s~~~-G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~ 158 (585)
|+++.|.+++..|.+. |+++++|||.|||||+. ++.++|++++|++++|+||+++++|+++||.|||+|||+++||
T Consensus 115 wl~~~~~~l~~~s~~~~g~~~~~gWT~YpPls~~---~~~~vd~~i~~l~l~gvssil~~iNfi~Ti~~~r~~~~~~~~~ 191 (791)
T 2yev_A 115 WAFLGAIVLALMSYFFPGGAPSVGWTFYYPFSAQ---SESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKM 191 (791)
Confidence 9999999999999999 66789999999999964 5788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhh
Q psy2379 159 PIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTF 238 (585)
Q Consensus 159 plf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~ 238 (585)
|+|+|+.++|++++++++|+++++++|++.||++|++||||.+||||++||||||+|||||||++++|++|++||++|++
T Consensus 192 plf~w~~~~t~~lll~~~pvla~a~~mll~dr~~~t~ff~p~~Ggdp~l~qhlfWffGHpeVyililP~~Giis~ii~~~ 271 (791)
T 2yev_A 192 PIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVASTF 271 (791)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH
Q psy2379 239 SSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI 318 (585)
Q Consensus 239 ~~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l 318 (585)
+|||+|||+.+++|+++++++|+.||+||||++|+|.+.|++|+++||++++||++|+|||++|++++|+|+++|++|++
T Consensus 272 ~~k~ifg~~~~i~a~~~i~~l~~~Vw~HHmf~~G~~~~~~~~f~~~TmiiavPtgikvf~wl~Tl~~~~~~~~~~~l~~l 351 (791)
T 2yev_A 272 ARKPLFGYRQMVWAQMGIVVLGTMVWAHHMFTVGESTLFQIAFAFFTALIAVPTGVKLFNIIGTLWGGKLQMKTPLYWVL 351 (791)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHH
Q psy2379 319 GFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFY 398 (585)
Q Consensus 319 ~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~ 398 (585)
+++++|++||+||+++|++++|.++|||||||||||+++.+|++|+++|++|||+||++||++|||++|+|||++++|++
T Consensus 352 gfi~~F~~GGltGv~la~~~~d~~~HdT~~VvaHfH~vl~gg~vf~~~g~~y~w~P~~tg~~~~~~l~~~~Fwl~~iG~~ 431 (791)
T 2yev_A 352 GFIFNFLLGGITGVMLSMTPLDYQFHDSYFVVAHFHNVLMAGSGFGAFAGLYYWWPKMTGRMYDERLGRLHFWLFLVGYL 431 (791)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCcccccccccc--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCcccccc
Q psy2379 399 VAFMPLYILGFMGVTRRMSHFED--ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWST 476 (585)
Q Consensus 399 l~f~pm~~~Gl~GmpRR~~~y~~--~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~ 476 (585)
++|+|||++|++|||||++||+| +++.++|.++++||+++.+|+++|++|+++|+++||+. .+|||+++||||++
T Consensus 432 l~f~p~~~lGl~GmpRR~~~y~~~~~~~~~~n~issiGs~i~~ig~llf~~~l~~s~~~~~~~---~~~pw~~~sLEW~~ 508 (791)
T 2yev_A 432 LTFLPQYALGYLGMPRRYYTYNADIAGWPELNLLSTIGAYILGLGGLVWIYTMWKSLRSGPKA---PDNPWGGYTLEWLT 508 (791)
Confidence 99999999999999999999976 27999999999999999999999999999999887653 45999999999999
Q ss_pred CCCCCCCCCC-cCcc-cccCChhhhhccCCCCCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy2379 477 SSPPPVYNFA-FIPL-IHQSDSWWYMKKNNFKFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLL---TIISF 550 (585)
Q Consensus 477 ~sPPp~~nf~-~~P~-V~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ 550 (585)
++|||+|||+ |+|. |+++|+.||+|+++.+++ +++ +++|+|+||++|++.|++.+.+++|+++ .++. +.+|+
T Consensus 509 ~sPP~~hnf~~e~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~Hlv~~SpwPl~~s~~~~~~~~glv~-~~~~~~~~~lgl 586 (791)
T 2yev_A 509 ASPPKAHNFDVKLPTEFPSERPLYDWKKKGVELKPEDP-AHIHLPNSSFWPFYSAATLFAFFVAVAA-LPVPNVWMWVFL 586 (791)
Confidence 9999999999 9999 999999999998885544 455 8999999999999999999999999998 5555 78899
Q ss_pred HHHHHHHHHHhcCCCCCcccCh
Q psy2379 551 IITLIIVIYNTFNYKRNYYISS 572 (585)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~i~~ 572 (585)
+.++.+++.|.+|.++|.+.+.
T Consensus 587 ~~~l~~m~~WwrDv~rE~t~G~ 608 (791)
T 2yev_A 587 ALFAYGLVRWALEDEYSHPVEH 608 (791)
Confidence 9999999999998888877443
No 3
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ...
Probab=100.00 E-value=8.6e-134 Score=1105.73 Aligned_cols=484 Identities=36% Similarity=0.763 Sum_probs=471.6
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|+||..|+. .+.+++.|||++|+||++|+|++++|.++ |++||++|+|+|+||++|||+|++|||
T Consensus 27 ~~~G~~~slliR~el~~p~~---~~~~~~~yn~~~T~Hg~~Mif~~vmp~~~ggfgn~lvPl~lga~dmafprln~~sfw 103 (514)
T 1v54_A 27 GMVGTALSLLIRAELGQPGT---LLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 (514)
T ss_dssp HHHHHHHHHHHHHHHSSSSC---SSCSHHHHHHHHHHHHHHHHHTTHHHHHTTHHHHHHHHHHTTCSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCc---cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHH
Confidence 57899999999999999964 45678899999999999999999999987 699999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
+++.|.+++..|.+.|+++++|||.|||||+++++|+.++|++++|++++++||+++++|+++|+.|||+|||+++|+|+
T Consensus 104 l~~~~~~l~~~s~~~~~g~~~gWT~YpPLs~~~~~~~~~vd~~i~~l~l~gvssil~~iNfi~Ti~~~r~~~~~~~~~pl 183 (514)
T 1v54_A 104 LLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPL 183 (514)
T ss_dssp THHHHHHHHHHHHHSTTCCCSTTTTCTTTTSTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTCCGGGSCH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcceecccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccCCH
Confidence 99999999999999998899999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc-
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS- 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~- 239 (585)
++|+.++|++++++++|+++++++|++.||+++++||||.+||||++||||||+|||||||++++|++|++||++|+++
T Consensus 184 f~W~~~~t~~l~llslpvla~a~~mll~dr~~~t~ff~p~~Ggdp~l~qhLFWffGHpeVyi~ilP~~g~is~ii~~~sg 263 (514)
T 1v54_A 184 FVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSG 263 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchHHHhHhheehhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|||+|||+.+++|+++++++|+.||+||||++|+|.+.|++|+++|+++++||++|+|||++|++++|+|+++|++|+++
T Consensus 264 ~k~ifg~~~~i~a~~~i~~l~~~Vw~HHmf~~g~~~~~~~~f~~~T~iiavPtgikvf~wl~Tl~g~~~~~~~~~~~~~g 343 (514)
T 1v54_A 264 KKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALG 343 (514)
T ss_dssp CSSCTTHHHHHHHHHHHHHHTTSCGGGGCTTSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHhhhcccceecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCchHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
++++|++||+||+++|++++|.++|||||||||||+++.+|++++++|++|||+||++||++|||++|+|||++++|+++
T Consensus 344 ~i~~F~~GGltGv~la~~~~d~~~HdT~~VvaHfH~vl~~g~vf~~~a~~y~w~P~~~G~~~~~~l~~~~fwl~~iG~~l 423 (514)
T 1v54_A 344 FIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNM 423 (514)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcchHhhcccccccccccCceEEEeeEEeeehHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||+| ++.++|.++++||+++.+|+++|++|+++|+++||+.. .|||+++||||++++|
T Consensus 424 ~f~p~~~lGl~GmpRR~~~y~~-~~~~~~~i~siG~~i~~~g~llf~~~l~~s~~~~~~~~---~~~~~~~sLEW~~~sP 499 (514)
T 1v54_A 424 TFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVL---TVDLTTTNLEWLNGCP 499 (514)
T ss_dssp HHTHHHHHHHTTCBTTCSSCCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBBC---CCTTGGGCGGGTTCSS
T ss_pred HHHHHHHhhhcceeeccccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC---CCCCCCCCcccCCCCC
Confidence 9999999999999999999976 89999999999999999999999999999999887654 5999999999999999
Q ss_pred CCCCCCCcCcccc
Q psy2379 480 PPVYNFAFIPLIH 492 (585)
Q Consensus 480 Pp~~nf~~~P~V~ 492 (585)
||+|||+|+|.|+
T Consensus 500 p~~hnf~e~P~v~ 512 (514)
T 1v54_A 500 PPYHTFEEPTYVN 512 (514)
T ss_dssp CCSSCCSSCCEEC
T ss_pred CCcccCCcCceee
Confidence 9999999999886
No 4
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=100.00 E-value=1.6e-131 Score=1094.27 Aligned_cols=482 Identities=37% Similarity=0.779 Sum_probs=461.4
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCC---------------------------CCcccchhHhhHHHHHHHHHHHHHHHH-
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGY---------------------------LPPEHYNQIFTAHGVIMIFFVAMPLVT- 53 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~---------------------------l~~~~y~~~~t~Hg~~Mif~~~~p~~~- 53 (585)
+++|+++|+++|+||..|+. .+ .+++.|||++|+||++|+|++++|+++
T Consensus 41 ~~~G~~~~~lir~eL~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~T~Hg~~Mif~~vmp~~~g 117 (566)
T 2gsm_A 41 GLISVAFTVYMRMELMAPGV---QFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHLWNVMITGHGILMMFFVVIPALFG 117 (566)
T ss_dssp HHHHHHHHHHHHHHHTSSSC---SSSBGGGGGSCHHHHHHHTTSCCCGGGCCBCHHHHHHHHHHHHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCc---hhhhhhhhhhhhhccchhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999974 43 367789999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccC-----CcccccCCCCCCCCCCCCchhHHHHHHHH
Q psy2379 54 GIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFA-----STGWLGYPPLSGIAQSPGVGVDYYIWSLQ 128 (585)
Q Consensus 54 g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~-----~~gWt~YpPls~~~~~p~~~~d~~i~~l~ 128 (585)
|++||++|+|+|+|||+|||+|++|||+++.|.+++..|.+.|+++ ++|||.|||||++ +++.++|+++++++
T Consensus 118 gfgn~lvPl~~ga~dmafprln~~sfwl~~~~~~l~~~s~~~~~g~~~~~~~~GWT~YpPLs~~--~~~~~vd~~i~~l~ 195 (566)
T 2gsm_A 118 GFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPLSTS--ESGYSTDLAIFAVH 195 (566)
T ss_dssp THHHHHHHHHHTCSSCSCHHHHHHHHHHHHHHHHHHHHHTTSBCGGGSBSCCSTTTTCTTHHHH--CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccChhHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCCcceecCCcCCC--CCCccHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998777 9999999999975 67889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhh
Q psy2379 129 IAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208 (585)
Q Consensus 129 l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~ 208 (585)
++|+||+++++|+++||.|+|+|||+++|+|+|+|+.++|++++++++|+++++++|++.||+++++||+|.+||||++|
T Consensus 196 l~gvssil~~iNfi~Ti~~~r~~~m~~~~~plf~W~~~~ta~llllalpvla~al~mll~dr~~~t~ff~p~gggdp~l~ 275 (566)
T 2gsm_A 196 LSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLLTDRNFGTTFFQPSGGGDPVLY 275 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTCGGGTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccccccchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHH
Q psy2379 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMII 288 (585)
Q Consensus 209 q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~i 288 (585)
|||||+|||||||++++|++|++||++|+++|||+|||+.+++|+++++++++.||+||||++|+|.+.|.+|+++|+++
T Consensus 276 qhLfWffGHpeVyililPa~Giis~iip~~~~k~ifg~~~~i~a~~~i~~l~f~Vw~HHmf~~G~~~~~~~~f~~~Tmii 355 (566)
T 2gsm_A 276 QHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVI 355 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHTTSCGGGGCTTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHhhcCCccccchhHHHHHHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHH
Q psy2379 289 SIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSG 368 (585)
Q Consensus 289 aiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag 368 (585)
++||++|+|||++|++++|+++++|++|+++++++|++||+||+++|++++|.++|||||||||||+++.+|++|+++|+
T Consensus 356 avPtgikvFnwl~Tl~g~~i~~~~p~l~~lgfi~~F~iGGltGvila~~~~d~~~HdTy~VvAHfH~vl~gg~vf~~fg~ 435 (566)
T 2gsm_A 356 AVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFAG 435 (566)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHTTBHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhhhhccchhhhcccchhhhcccceEEEEEeehhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2379 369 INYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQ 448 (585)
Q Consensus 369 ~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~n 448 (585)
+|||+||++||++|||++|+|||++++|++++|+|||++|++|||||++||++ ++.++|.++++|++++.+|+++|++|
T Consensus 436 ~y~w~P~~tG~~~~~~l~~~~Fwl~~iG~~l~f~p~~~lGl~GmpRR~~~y~~-~~~~~~~i~siG~~i~~ig~llf~~n 514 (566)
T 2gsm_A 436 IYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFATWNFVSSLGAFLSFASFLFFLGV 514 (566)
T ss_dssp HHHHHHHHHSEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCSCCCG-GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976 89999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCCCC---CCccccccCCCCCCCCCCcCcccc
Q psy2379 449 LIVSYRKRHTLIDITGDPWN---GRTLEWSTSSPPPVYNFAFIPLIH 492 (585)
Q Consensus 449 l~~Sl~~~~~~~~~~~~PW~---~~tLEW~~~sPPp~~nf~~~P~V~ 492 (585)
+++|+++||+. .+|||+ ++||||+++||||+|||+|+|.|+
T Consensus 515 l~~sl~~~r~~---~~~pw~~~~~~sLEW~~~sPp~~hnf~e~P~v~ 558 (566)
T 2gsm_A 515 IFYTLTRGARV---TANNYWNEHADTLEWTLTSPPPEHTFEQLPKRE 558 (566)
T ss_dssp HHHHHHHCEEC---CCSCSSCTTCCSGGGGSCSSCCSSCC-------
T ss_pred HHHHHHhCCcC---CCCCccCCCCCCcccccCCCCCccCCCCCceee
Confidence 99999988753 469998 789999999999999999999987
No 5
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ...
Probab=100.00 E-value=9.5e-108 Score=903.97 Aligned_cols=436 Identities=20% Similarity=0.336 Sum_probs=397.3
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCC-------C-cccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYL-------P-PEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPF 73 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l-------~-~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Pr 73 (585)
+++|+++|+++|+|+..| +++ + ++.|||++|+||++|+|++++|+++|++||++|+++|+|| +||
T Consensus 39 ~liG~~~sllirl~l~~~-----~~~~~~~~~l~~~~~Yn~i~T~Hg~iMiff~~mp~~~Gfgn~lvp~~lg~pd--~pr 111 (569)
T 3s8f_A 39 LIVGSLFGPFQALNYGNV-----DAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRP--NMG 111 (569)
T ss_dssp HHHHHTHHHHHHHHTTTC-----CCHHHHHHHSTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTCCC--CHH
T ss_pred HHHHHHHHHHHHHHhccC-----cccccccccCCchhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chH
Confidence 578999999999998644 333 3 6889999999999999999999999999999999999999 999
Q ss_pred chhhhhhhhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy2379 74 LNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGM 153 (585)
Q Consensus 74 ln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm 153 (585)
+|++|||++..|.+++..|.+.|+ +++|||.|||||+ .|.++++++++++||+++++||++||+|+|+++
T Consensus 112 ln~~SfWll~~~~~ll~~s~~~gg-agtGWT~YpPLs~--------~~~~~~sL~l~gvsSilgaiNfi~Ti~~mr~~~- 181 (569)
T 3s8f_A 112 LMWLSWWMAFIGLVVAALPLLANE-ATVLYTFYPPLKG--------HWAFYLGASVFVLSTWVSIYIVLDLWRRWKAAN- 181 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-CCSTTTTCTTBCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CCCCCccCcchhh--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 999999999999999999987654 6789999999995 289999999999999999999999999998843
Q ss_pred CCccchHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHH
Q psy2379 154 KLMNMPIFTWTALCTNIL-IVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFS 232 (585)
Q Consensus 154 ~~~~~plf~w~~l~t~il-~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~ 232 (585)
+.+|||+|+|+.++|+++ ++.++|+++++++|++ | .||++.+||||++||||||+|||||||++++|++|++|
T Consensus 182 ~~~~~Plf~W~~l~T~iL~ll~slpvla~ai~mll-~-----~~f~~~~ggdpiL~qhLFWffGHPeVyililP~fgiis 255 (569)
T 3s8f_A 182 PGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLL-P-----WSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIY 255 (569)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-H-----HHHTSSSEECHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----hhcCcccccccccccchhhhhcchHHHHHHHHHHHHHH
Confidence 336999999999999998 6778999998888874 5 46777999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHHhhHhcccccccc-CCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcC------
Q psy2379 233 EVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHFFTM-GSGANVNAFFGITTMIISIPTGAKIFNWLFTMYR------ 305 (585)
Q Consensus 233 ~iip~~~~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~-g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~------ 305 (585)
|++|+++|||+|||+.++++++++.++|+.||+||||++ |+|.+.|.+|+++||+|++||++|+|||++|+++
T Consensus 256 ~ii~~~sgk~~~~~~~~~~a~~~~~v~~~~VwaHHmft~pG~~~~~~~~ft~~TmiIavPtgikvFswlaTl~~~gr~rG 335 (569)
T 3s8f_A 256 TILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRG 335 (569)
T ss_dssp HTHHHHTTSCBSCHHHHHHHHHHHHHHSSTTGGGGCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCchhhHHHHHHHHHHHHHHHHHhcCCceEecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999983
Q ss_pred C--------ccccchhHH-HHHHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhh
Q psy2379 306 G--------RIRFEVPIL-WTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKA 376 (585)
Q Consensus 306 g--------~i~~~~p~l-f~l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl 376 (585)
+ ++++++|++ +.++++++|++||+||+++|++++|.++|||||||||||+++.|++.+.++|.+|||+||+
T Consensus 336 ~~~lfgw~~~l~~~~p~l~~~~~~i~~F~~GGltGvila~~~vd~~lHdTy~VVaHFH~vl~gav~~~~~g~~yw~~P~l 415 (569)
T 3s8f_A 336 GRGLFGWIRALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNL 415 (569)
T ss_dssp CCSSSHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHTTBTHHHHHHHHHTTTHHHHHHHHTTTTHHHHH
T ss_pred cccchhhhhhccCCCHHHHHHHHHHHHHhhhhhhhhhccccccceEEecCEEEeehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 377777765 4688999999999999999999999999999999999999997655555555444446999
Q ss_pred ccccCCc---hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccc--cccc--hhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2379 377 FGYKLEP---FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMS--HFED--ISLQIWFQIAAFGTLLIAMGILSFIIQL 449 (585)
Q Consensus 377 ~G~~~~~---~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~--~y~~--~~~~~~~~i~siGa~i~~~g~llfv~nl 449 (585)
+||+++| |++|+|||++++|++++|+|||++|++|||||++ ||+| ++|+++|.++++||+++.+|+++|++|+
T Consensus 416 tGr~l~~~~~~l~~~hFwl~fiG~~l~f~pmh~lGl~GmpRR~~~~~y~d~~~~~~~~~~issiG~~i~~~g~llf~~~l 495 (569)
T 3s8f_A 416 TGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGL 495 (569)
T ss_dssp HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCCGGGSTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999984 4543 4799999999999999999999999999
Q ss_pred HHHHHhccccc
Q psy2379 450 IVSYRKRHTLI 460 (585)
Q Consensus 450 ~~Sl~~~~~~~ 460 (585)
++|+++||+.+
T Consensus 496 ~~s~~~~~~~~ 506 (569)
T 3s8f_A 496 FSVLLSRERKP 506 (569)
T ss_dssp HHHHSCSCCCH
T ss_pred HHHHHhCCCCC
Confidence 99999887653
No 6
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=100.00 E-value=5.7e-101 Score=839.71 Aligned_cols=429 Identities=16% Similarity=0.193 Sum_probs=392.4
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCC-CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYL-PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l-~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|+++|.|++.|+. .+. +++.|||++|+||++|+|+|++|+.+|++||++|+|+|+| ++|||+|++|||
T Consensus 25 ~~~G~~~~llir~~l~~p~~---~~~~~~~~Yn~~~T~H~~~mIf~~v~p~~~g~gn~lvPl~~ga~-mafprln~~sfw 100 (474)
T 3mk7_A 25 GIVGMGLGVFIAAQLAWPFL---NFDLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTT-LFAPKLAAFTFW 100 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGG---GTTCTTTSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSC-CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC---CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHH
Confidence 57899999999999999975 455 7889999999999999999999999999999999999999 999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
++++|.++...|.+.|. ++| |+|||++ .++|++++++++ ++++|+++|+.|||+|| +
T Consensus 101 l~~~~~~l~~~s~~~G~--~~G-t~YppLs-------~~vd~~i~~~~l------l~~iNfi~Ti~~~r~~~-------l 157 (474)
T 3mk7_A 101 GWQLVILLAAISLPLGF--TSS-KEYAELE-------WPIDILITIVWV------AYAVVFFGTLAKRKVKH-------I 157 (474)
T ss_dssp HHHHHHHHHHHHTTTTC--BCC-CTTCCBC-------HHHHHHHHHHHH------HHHHHHHHHHHTCSSSS-------C
T ss_pred HHHHHHHHHHHHHhccC--CCC-CcCCCCh-------hhHHHHHHHHHH------HHHHHHHHHHHHcCCCC-------c
Confidence 99999999999999975 457 9999998 578999988776 88999999999999997 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhh-HHHHHHHHhhhc
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPV-FGIFSEVVSTFS 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa-~gi~~~iip~~~ 239 (585)
++|..+.++.++++++-.+. ..+.++-..+++||++.+||||+ || |+|||||||++++|+ +|++||++|+++
T Consensus 158 fvw~~~~ta~ll~i~~l~~~---~~l~~Pvl~~~~f~~~~gggd~~-~q---W~fgHp~Vyililp~~~gi~~~ii~~~~ 230 (474)
T 3mk7_A 158 YVGNWFFGAFILTVAILHVV---NNLEIPVTAMKSYSLYAGATDAM-VQ---WWYGHNAVGFFLTAGFLGIMYYFVPKQA 230 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTCEEEEETTEEEESCCHHHHHH-HH---HHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---hhhccchhcccccccccCCCCee-ee---HHhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence 67777788777763221111 11222223367899999999999 99 999999999999998 999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcC--CccccchhHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYR--GRIRFEVPILWT 317 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~--g~i~~~~p~lf~ 317 (585)
|||+|||+.+++++++++++|+.||+||||++|+|.+.|.+++++|+++++||++|+|||++|+++ +|+|+++|++|+
T Consensus 231 ~~~~f~~~~~~~a~~~i~~l~~~vw~HHmf~~g~~~~~~~~f~~~t~~i~vPt~i~vf~w~~Tl~~~~~~~~~~~~~~~~ 310 (474)
T 3mk7_A 231 ERPVYSYRLSIVHFWALITVYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFL 310 (474)
T ss_dssp TCCBSCHHHHHHHHHHHHHHGGGGGGGGGTTSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHGGGTTGGGHHHHCHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHHhccccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCChhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccc--cCCchhhhHHHHHHHH
Q psy2379 318 IGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGY--KLEPFWGKCSFWFWLI 395 (585)
Q Consensus 318 l~~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~--~~~~~l~~~~fwl~~i 395 (585)
++++.+|.+||+||+++|++++|.++|||||||||||+++.++++++++|++|||+||++|| ++|||++|+|||++++
T Consensus 311 ~~fi~~f~~gG~tG~~la~~~vd~~~H~T~~vvaHfH~~l~gg~~f~~~~~~y~~~P~~~g~~~~~~~~l~~~~Fwl~~i 390 (474)
T 3mk7_A 311 VVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATI 390 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTBSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCSSCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7899999999999999
Q ss_pred HHHHHhhhhhhccc-CCccccccc-ccc---------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q psy2379 396 GFYVAFMPLYILGF-MGVTRRMSH-FED---------ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITG 464 (585)
Q Consensus 396 G~~l~f~pm~~~Gl-~GmpRR~~~-y~~---------~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~ 464 (585)
|++++|+|||++|+ ||||||++| |++ ++++++|.++++|++++.+|.++|++|+++|++++|+.+ .+
T Consensus 391 G~~l~f~~~~~~Gl~~GmpRR~~~~~~~~~~~f~~~~~~~~~~~~~~siG~~i~~~g~l~f~~~~~~s~~~~~~~~--~~ 468 (474)
T 3mk7_A 391 GTVLYIASMWVNGIAQGLMWRAINDDGTLTYSFVESLEASHPGFVVRMIGGAIFFAGMLVMAYNTWRTVQAAKPAE--YD 468 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCBCTTSSBSCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC--CC
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CC
Confidence 99999999999999 899999998 432 589999999999999999999999999999999887653 34
Q ss_pred CC
Q psy2379 465 DP 466 (585)
Q Consensus 465 ~P 466 (585)
||
T Consensus 469 ~~ 470 (474)
T 3mk7_A 469 AA 470 (474)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 7
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.1e-83 Score=698.13 Aligned_cols=405 Identities=17% Similarity=0.227 Sum_probs=351.2
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|+++|.|++.|+. . .+++.|||+||+||++|+| |+.|..+|++||++|+++| ||+++||+|+++||+
T Consensus 27 f~vg~l~gll~~~ql~~P~~---~-~~~~~fn~~rt~H~~~mif-w~~~~~~g~~~ylvP~~~g-~dl~~prl~~~~fw~ 100 (465)
T 3o0r_B 27 FVGQILFGLIMGLQYVVGDF---L-FPAIPFNVARMVHTNLLIV-WLLFGFMGAAYYLVPEESD-CELYSPKLAWILFWV 100 (465)
T ss_dssp HHHHHHHHHHHHHHTTSTTT---T-TTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT-SCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCc---c-CCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCcchHHHHHHHHH
Confidence 57899999999999999974 3 3889999999999999997 9999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHhhhccc------CCcc-c-ccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy2379 82 TSGGAILVMISLFIGEF------ASTG-W-LGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGM 153 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~------~~~g-W-t~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm 153 (585)
++++.+++.+|++.|+. ++.| | +.+.++++ .+...|+.+ .+++++.++|+++||.|||+|||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~w~~~g~ey~e----~~~~~~i~l------~v~~i~~~~n~~~Ti~~~r~~~m 170 (465)
T 3o0r_B 101 FAAAGVLTILGYLLVPYAGLARLTGNELWPTMGREFLE----QPTISKAGI------VIVALGFLFNVGMTVLRGRKTAI 170 (465)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHTTGGGSCCCSBTTBC----SCHHHHHHH------HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCCCccCCccccc----chhHHHHHH------HHHHHHHHHHHHHHHHhccCccH
Confidence 99999999999998542 4679 9 65555442 345666654 47889999999999999999986
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHH-HhhhhhHHHHH
Q psy2379 154 KLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVY-ILVLPVFGIFS 232 (585)
Q Consensus 154 ~~~~~plf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vy-i~ilPa~gi~~ 232 (585)
++ ++.|+ ++++|++..+ ++|++..+ ...|+++|+||||||| ++.+|+.|++|
T Consensus 171 ~~----~~~~~--------~~~~~~l~~~------------~~~~~~~~---~~~~~~~W~~gH~~V~gi~~lpa~gi~~ 223 (465)
T 3o0r_B 171 SM----VLMTG--------LIGLALLFLF------------SFYNPENL---TRDKFYWWWVVHLWVEGVWELIMGAILA 223 (465)
T ss_dssp HH----HHHHH--------HHHHHHHHGG------------GGCCCSSH---HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HH----HHHHH--------HHHHHHHHHH------------HHhccccc---hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 42 22222 2344554422 34555433 4689999999999996 99999999999
Q ss_pred HHHhhhcC--CCCCCchHHHHHHHHHHHHhhHhcc--ccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCcc
Q psy2379 233 EVVSTFSS--KRLFGYSSMVYATVVITLLSYIVWL--HHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRI 308 (585)
Q Consensus 233 ~iip~~~~--kplfsy~~~v~a~~~i~~ls~~vw~--HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i 308 (585)
|++||++| ||+++|+..+.+. +.+++. +|+ |||+++|.|++.+.+++++|+++++|+++|++||+.|+|++|.
T Consensus 224 ~ilp~~~~~~~~~~~~~~~~~~~--l~l~~g-vwg~~HH~~~~g~p~~~~~~~~~~S~l~~vP~~~~~~n~~~t~~~~~~ 300 (465)
T 3o0r_B 224 FVLVKITGVDREVIEKWLYVIIA--MALISG-IIGTGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFNTINRRRR 300 (465)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHH--HHHHHH-HHHGGGGGSSSSSCTHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHcCCCchHHHHHHHHHHH--HHHHHH-hccCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999 8899999876663 444443 665 9999999999999999999999999999999999999999987
Q ss_pred --ccchhHHHHHHHhh-hhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcccc-----
Q psy2379 309 --RFEVPILWTIGFMI-TFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYK----- 380 (585)
Q Consensus 309 --~~~~p~lf~l~~i~-~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~----- 380 (585)
+++.|++|++++.+ .|+.||++|++++.+++|++.|||||||||||+++.|+++|+.+|++|||+||++||+
T Consensus 301 ~~~~~~p~~f~~~~~~~~F~~~G~~G~~la~~~vn~~~H~T~~vvaHfH~~l~G~~~~~~~a~~yy~~Pkl~gr~~~~~~ 380 (465)
T 3o0r_B 301 DYPNRAVALWAMGTTVMAFLGAGVWGFMHTLAPVNYYTHGTQLTAAHGHMAFYGAYAMIVMTIISYAMPRLRGIGEAMDN 380 (465)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTSCSSCCH
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHhCccccChHHhccceehhhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcccch
Confidence 89999999999887 6999999999999999999999999999999999999999999999999999999995
Q ss_pred CCchhhhHHHHHHHHHHHHHhhhhhhccc-CCccccccc--cc------chhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2379 381 LEPFWGKCSFWFWLIGFYVAFMPLYILGF-MGVTRRMSH--FE------DISLQIWFQIAAFGTLLIAMGILSFIIQLIV 451 (585)
Q Consensus 381 ~~~~l~~~~fwl~~iG~~l~f~pm~~~Gl-~GmpRR~~~--y~------~~~~~~~~~i~siGa~i~~~g~llfv~nl~~ 451 (585)
+|||++|+|||++++|++++++|||.+|+ ||||||++| |. .++++++|.+|++|++++++|.++|++|+++
T Consensus 381 ~~~~l~~~~FWl~~iG~~~~~~~m~~~G~~qg~~~R~~~~~~~~~f~~~~~~~~~~~~~r~iGg~l~~~G~l~f~~n~~~ 460 (465)
T 3o0r_B 381 RSQVLEMWGFWLMTVAMVFITLFLSAAGVLQVWLQRMPADGAAMTFMATQDQLAIFYWLREGAGVVFLIGLVAYLLSFRR 460 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTTSCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhccccChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999998 899999876 22 1357899999999999999999999999997
Q ss_pred H
Q psy2379 452 S 452 (585)
Q Consensus 452 S 452 (585)
+
T Consensus 461 ~ 461 (465)
T 3o0r_B 461 G 461 (465)
T ss_dssp -
T ss_pred H
Confidence 6
No 8
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=100.00 E-value=1.2e-79 Score=700.91 Aligned_cols=419 Identities=17% Similarity=0.163 Sum_probs=358.7
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCC-----CCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGY-----LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNN 76 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~-----l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~ 76 (585)
+++|+++|+++|.|++.|+. .+ .+++.|||++|+||++|+| |++|..+|++||++|+++|+++.++||+|+
T Consensus 316 flvg~llGll~r~~l~~P~~---~~gl~~l~~~~~Yn~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g~dp~~~~~L~~ 391 (800)
T 3ayf_A 316 FFVQTMFGALLAHYYTEPDS---FFGINWIYDILPFNIAKGYHLQLAIF-WIATAWLGMGIFIAPLVGGQEPKKQGLLVD 391 (800)
T ss_dssp HHHHHHHHHHHHHHTTSTTC---STTCSHHHHHSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcc---ccccccccCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCccchHHHH
Confidence 57899999999999999963 22 3557799999999999999 999999999999999999943556677999
Q ss_pred hhhhhhHHHHHHHHHHhhhcc--cCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCC
Q psy2379 77 LSFWMTSGGAILVMISLFIGE--FASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIK--MRAPG 152 (585)
Q Consensus 77 ~sfwl~~~g~~l~~~s~~~G~--~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~--~r~~g 152 (585)
++||++++|+++..+|++.|. ..+.||+ |++.++.+|.+. .++|.+++ .+|+++.++|+++||.+ ||+||
T Consensus 392 ~~fwl~~~g~vl~~~s~~~G~~g~~~~~wf-~~~~~G~ey~e~--~~~~~i~l---~vg~ll~~in~i~TI~~~~R~~pg 465 (800)
T 3ayf_A 392 LLFWALVVLVGGSMIGQWLGVNGYLGNEWF-LLGHQGWEYIEL--GRIWQIIL---VVGMLLWLFIVFRGVKRGLKRESD 465 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTTHH-HHSCCCBTTBCS--CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccee-eccCCCccccch--HHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999975 2344566 777766556543 14454333 39999999999999995 55587
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhH-HH-
Q psy2379 153 MKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVF-GI- 230 (585)
Q Consensus 153 m~~~~~plf~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~-gi- 230 (585)
| |+++|..+.+ ++++|++..+..++.-| ++|+ ++||+||+|||||||++++|++ |+
T Consensus 466 m-----~~~~W~~~~~----~lai~vl~~~~~l~~~~----~~f~---------l~q~lfW~~gHp~Vy~~~~p~~~gi~ 523 (800)
T 3ayf_A 466 K-----GGLIHLLFYS----AIAVPFFYIFAFFIQPD----TNFT---------MADFWRWWIIHLWVEGIFEVFAVVVI 523 (800)
T ss_dssp T-----TSHHHHHHHH----HHHHHHHHGGGGGCCTT----SCHH---------HHHHHHHHHHTTTHHHHHHTHHHHHH
T ss_pred C-----eeHHHHHHHH----HHHHHHHHHHHHHhccC----CCch---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 7889998865 56778776554433222 2222 6899999999999999999988 66
Q ss_pred HHHH------HhhhcCCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhc
Q psy2379 231 FSEV------VSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMY 304 (585)
Q Consensus 231 ~~~i------ip~~~~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~ 304 (585)
.|++ +|+++|||+|||..+. ..+++++ |+||||++|+|++.+.+++++|+++++|+++|+|||+.|++
T Consensus 524 ay~~~~~s~vip~~a~kplf~y~~l~---l~~G~lg---~~HHmf~~G~p~~~~~~~~v~S~liaVPs~v~~fn~~~Tl~ 597 (800)
T 3ayf_A 524 GFLLVQLRLVTKKSTVRALYFQFTIL---LGSGVIG---IGHHYYYNGSPEVWIALGAVFSALEVIPLTLLILEAYEQYK 597 (800)
T ss_dssp HHHHHHTTSBCHHHHHHHHHHHHHHH---HHHHTTG---GGGGSSSSSCCTHHHHHHHHHHHTTHHHHHSSHHHHHHHHH
T ss_pred HHHHHHhccccHHHhccHHHHHHHHH---HHHHHHH---HHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665 9999999999995553 3344444 89999999999999999999999999999999999999999
Q ss_pred CC-----ccccchhHHHHHHHhhhhhhc-cccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhcc
Q psy2379 305 RG-----RIRFEVPILWTIGFMITFVIG-GMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFG 378 (585)
Q Consensus 305 ~g-----~i~~~~p~lf~l~~i~~f~iG-G~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G 378 (585)
+| +++++.||+|++++++.|++| |++|++++.+++|++.|||+|||||||+++.|+++|+++|++|||+||++|
T Consensus 598 ~g~~~r~~~~~~~~ml~~lg~~~~f~~GaGltGv~la~~~vn~~~H~T~~vvaHfH~~l~G~~~f~~fg~iYy~~PkltG 677 (800)
T 3ayf_A 598 MMRDGGANFPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAIAVLLYSLRNIVK 677 (800)
T ss_dssp HHHHSCTTCTTHHHHHHHHHHHHHHHHTTTHHHHHTTSHHHHHHHSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHHHHhhHHHHcccccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 588999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCchhhhHHHHHHHHHHHH-Hhhhhhhccc-CCcccccc--------ccc-chhHHHHHHHHHhhhHHHHHHHHHHH
Q psy2379 379 Y-KLEPFWGKCSFWFWLIGFYV-AFMPLYILGF-MGVTRRMS--------HFE-DISLQIWFQIAAFGTLLIAMGILSFI 446 (585)
Q Consensus 379 ~-~~~~~l~~~~fwl~~iG~~l-~f~pm~~~Gl-~GmpRR~~--------~y~-~~~~~~~~~i~siGa~i~~~g~llfv 446 (585)
| ++|||++|+|||++++|+++ +|+|||++|+ ||||||++ +|. +++++++|.++++|++++++|+++|+
T Consensus 678 r~~~se~L~k~~FWl~~iG~~lm~f~~m~~~Gl~QG~~rR~~G~w~~r~~~y~~~~~~~~~~~ir~iGg~l~~iG~llf~ 757 (800)
T 3ayf_A 678 PEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAFIHGYWASRSPSFLQQDVVQNLLLVRAVPDTIFLIGVVALL 757 (800)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHHHHSSHHHHHSHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 57999999999999999999 7799999998 79999875 332 24789999999999999999999999
Q ss_pred HHHHHHHHhccc
Q psy2379 447 IQLIVSYRKRHT 458 (585)
Q Consensus 447 ~nl~~Sl~~~~~ 458 (585)
+|++++++++++
T Consensus 758 ~nl~~t~~~~~~ 769 (800)
T 3ayf_A 758 VFAIKALFHLRK 769 (800)
T ss_dssp HHHHTTGGGBCC
T ss_pred HHHHHHHHcCCC
Confidence 999999887654
No 9
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=97.20 E-value=0.0085 Score=65.14 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=119.7
Q ss_pred cchhhhHHHHHhhhhHHHHhhhhhH-HHHHHHHhhhcCCCCCCchHHHHHHHHHHH------HhhHh-------------
Q psy2379 204 NIMMYVNLIWIWGHPEVYILVLPVF-GIFSEVVSTFSSKRLFGYSSMVYATVVITL------LSYIV------------- 263 (585)
Q Consensus 204 dpll~q~LfW~fGHp~Vyi~ilPa~-gi~~~iip~~~~kplfsy~~~v~a~~~i~~------ls~~v------------- 263 (585)
++..|..++=.=|.-.+. ++.|++ |..++++|+.+||++.+.|+..+++|...+ .|+..
T Consensus 49 ~~~~fn~~rt~H~~~mif-w~~~~~~g~~~ylvP~~~g~dl~~prl~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~G 127 (465)
T 3o0r_B 49 PAIPFNVARMVHTNLLIV-WLLFGFMGAAYYLVPEESDCELYSPKLAWILFWVFAAAGVLTILGYLLVPYAGLARLTGNE 127 (465)
T ss_dssp TTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHTTGG
T ss_pred CccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCC
Confidence 556677666666666664 778864 999999999999999999999988877544 33333
Q ss_pred -cccccccc--CCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHH-H---Hhhhhhhccccceeecc
Q psy2379 264 -WLHHFFTM--GSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTI-G---FMITFVIGGMAGVILAV 336 (585)
Q Consensus 264 -w~HHmf~~--g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l-~---~i~~f~iGG~tGv~la~ 336 (585)
|. |.-.. ..+...+... .+-.-.-..|.+.|+.+.|.+ .+.+.+ . .+..+.+. +.....
T Consensus 128 ~w~-~~g~ey~e~~~~~~i~l-------~v~~i~~~~n~~~Ti~~~r~~---~m~~~~~~~~~~~~~l~~~---~~~~~~ 193 (465)
T 3o0r_B 128 LWP-TMGREFLEQPTISKAGI-------VIVALGFLFNVGMTVLRGRKT---AISMVLMTGLIGLALLFLF---SFYNPE 193 (465)
T ss_dssp GSC-CCSBTTBCSCHHHHHHH-------HHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHHHHHHGG---GGCCCS
T ss_pred CCc-cCCcccccchhHHHHHH-------HHHHHHHHHHHHHHHHhccCc---cHHHHHHHHHHHHHHHHHH---HHhccc
Confidence 22 32111 1222233222 222234567889999886532 333222 1 22222222 223221
Q ss_pred c-ccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHhhhhhhcccCCcccc
Q psy2379 337 P-AANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRR 415 (585)
Q Consensus 337 ~-~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR 415 (585)
. ..|... .|-.+ |.-+.+-.....++.+||.+||+.|++- .-..+|+........+.. -+.| +-.
T Consensus 194 ~~~~~~~~---~W~~g--H~~V~gi~~lpa~gi~~~ilp~~~~~~~----~~~~~~~~~~~~l~l~~g-vwg~----~HH 259 (465)
T 3o0r_B 194 NLTRDKFY---WWWVV--HLWVEGVWELIMGAILAFVLVKITGVDR----EVIEKWLYVIIAMALISG-IIGT----GHH 259 (465)
T ss_dssp SHHHHHHH---HHHHH--HHHHTTHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHH-HHHG----GGG
T ss_pred cchHHHHH---HHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHHHH-hccC----cch
Confidence 1 112111 13333 5655444445667889999999999541 123344433222211111 1111 111
Q ss_pred cccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 416 MSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 416 ~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
.+.-..| ..+..+.++.+++..+=..+-.+|.+.++++++
T Consensus 260 ~~~~g~p--~~~~~~~~~~S~l~~vP~~~~~~n~~~t~~~~~ 299 (465)
T 3o0r_B 260 YFWIGVP--GYWLWLGSVFSALEPLPFFAMVLFAFNTINRRR 299 (465)
T ss_dssp GSSSSSC--THHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCS
T ss_pred hccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1111111 223445677777888888888888888887665
No 10
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=96.68 E-value=0.0033 Score=68.55 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=92.9
Q ss_pred hhHHHHHHHhhhhhhccccceeec----ccccccc---cccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccC-Cc
Q psy2379 312 VPILWTIGFMITFVIGGMAGVILA----VPAANFL---LHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKL-EP 383 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG~tGv~la----~~~~d~~---~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~-~~ 383 (585)
..-.|.+.++....+|+.-|++.+ .+..|.. .+....+..|--.++...+..+++|..+|..|++.|+++ .+
T Consensus 13 ~~~~~~~~a~~~~~~G~~~~llir~~l~~p~~~~~~~~~~Yn~~~T~H~~~mIf~~v~p~~~g~gn~lvPl~~ga~mafp 92 (474)
T 3mk7_A 13 VVRQFAIMTVVWGIVGMGLGVFIAAQLAWPFLNFDLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTTLFAP 92 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCTTTSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 344566667777777888887654 4444443 334455668888888888888888888888899999886 78
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
|+.+.+||++..|..+...++...+-+| + .|++.++ . + .+.+....++..+|++.++.++|
T Consensus 93 rln~~sfwl~~~~~~l~~~s~~~G~~~G--t---~YppLs~-~------v-d~~i~~~~ll~~iNfi~Ti~~~r 153 (474)
T 3mk7_A 93 KLAAFTFWGWQLVILLAAISLPLGFTSS--K---EYAELEW-P------I-DILITIVWVAYAVVFFGTLAKRK 153 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCBCC--C---TTCCBCH-H------H-HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC--C---cCCCChh-h------H-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988887733356 4 3433221 0 0 12223333478899999988654
No 11
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=96.44 E-value=0.12 Score=57.36 Aligned_cols=239 Identities=12% Similarity=0.159 Sum_probs=127.9
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||-.|..++=.=|---++.+.+|. +|...+++|+..+ |.+-.-|....++|. +...++.+..
T Consensus 271 dp~l~qhLfWffGHpeVyililPa-~Giis~iip~~~~-k~ifg~~~~i~a~~~------i~~l~f~Vw~---------- 332 (566)
T 2gsm_A 271 DPVLYQHILWFFGHPEVYIIVLPA-FGIVSHVIATFAK-KPIFGYLPMVYAMVA------IGVLGFVVWA---------- 332 (566)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT-SCCTTHHHHHHHHHH------HHHHTTSCGG----------
T ss_pred hHhHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhcC-CccchHHHHHHHHHH------HHHHHhhhcc----------
Confidence 344455544444445588899999 9999999999544 434333444334331 1222222221
Q ss_pred CCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 108 PLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLF 184 (585)
Q Consensus 108 Pls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a~~ 184 (585)
...+.++.+.| +....-.+..+-+.+...|.+.|+.+.|-+ .+ +...|..... ..+..-.+++...
T Consensus 333 ---HHmf~~G~~~~~~~~f~~~TmiiavPtgikvFnwl~Tl~g~~i~----~~-~p~l~~lgfi---~~F~iGGltGvil 401 (566)
T 2gsm_A 333 ---HHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGSIE----LK-TPMLWALGFL---FLFTVGGVTGIVL 401 (566)
T ss_dssp ---GGCTTTTCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCBC----CC-HHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ---cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CC-chHHHHHHHH---HHhhhhccchhhh
Confidence 22233333333 222223344666777788999888765432 12 4444554442 2232233332211
Q ss_pred -hhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHH---hhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH-
Q psy2379 185 -LSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYI---LVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLL- 259 (585)
Q Consensus 185 -~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi---~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~l- 259 (585)
...+|..+.- =.|-=+|=.-.+ .+...+|.+|+..|+++||+ ++.|+..+.+|...+-
T Consensus 402 a~~~~d~~~Hd----------------Ty~VvAHfH~vl~gg~vf~~fg~~y~w~P~~tG~~-~~~~l~~~~Fwl~~iG~ 464 (566)
T 2gsm_A 402 SQASVDRYYHD----------------TYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQ-YPEWAGKLHFWMMFVGA 464 (566)
T ss_dssp HSHHHHHHHTT----------------BHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHSEE-CCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccc----------------ceEEEEEeehhhHHHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHH
Confidence 1223332211 124455544333 23345799999999999998 6999999998763322
Q ss_pred -hhHhcccccc-ccCCc-------h---hHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchh
Q psy2379 260 -SYIVWLHHFF-TMGSG-------A---NVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVP 313 (585)
Q Consensus 260 -s~~vw~HHmf-~~g~~-------~---~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p 313 (585)
-... ..|.. ..|+| + ..+...++.+.+..+-..+-++|.+.++.++|..-+.|
T Consensus 465 ~l~f~-p~~~lGl~GmpRR~~~y~~~~~~~~~i~siG~~i~~ig~llf~~nl~~sl~~~r~~~~~p 529 (566)
T 2gsm_A 465 NLTFF-PQHFLGRQGMPRRYIDYPEAFATWNFVSSLGAFLSFASFLFFLGVIFYTLTRGARVTANN 529 (566)
T ss_dssp HHHHH-HHHHHHHTTCBSSCSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCSC
T ss_pred HHHHH-HHHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 2222 23331 12332 1 23455666666666666677888888888776544444
No 12
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1
Probab=95.77 E-value=0.01 Score=66.95 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=99.2
Q ss_pred hhHHHHHHHhhhhhhcccccee----eccccc---ccc--cccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccc-cC
Q psy2379 312 VPILWTIGFMITFVIGGMAGVI----LAVPAA---NFL--LHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGY-KL 381 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG~tGv~----la~~~~---d~~--~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~-~~ 381 (585)
.-.++.+.++..+.+|+.-|++ ++.+.. +.. .+...-+.+|-=.++...+...++|..+|..|++.|. .+
T Consensus 57 Ig~~Y~i~a~~~~lvG~~~slliR~eL~~P~~~~~~~~~~~~Yn~i~T~Hg~iMIFf~vmp~~~Gfgn~lvPl~lga~dm 136 (663)
T 1fft_A 57 LGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDV 136 (663)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSSCTTCCCSTHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4567888899999999999988 555552 221 1223345577666666666667777777778999984 44
Q ss_pred -CchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccc------cccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2379 382 -EPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMS------HFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYR 454 (585)
Q Consensus 382 -~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~------~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~ 454 (585)
.+|+.+.+||++..|..+...++...+-.|.-+..| +|. ++ +..-..-+|-.+.++|.++..+|++.++.
T Consensus 137 afPrLn~~sfWl~~~~~~l~~~S~~~g~g~~tGWT~YpPLs~~~~~-~g--~~vd~~i~~l~l~gvssil~aiNfi~Ti~ 213 (663)
T 1fft_A 137 AFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYS-PG--VGVDYWIWSLQLSGIGTTLTGINFFVTIL 213 (663)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSTTTTCTTTSSCSCT-TC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeeecCcccccccC-CC--cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999988887765444433321 121 11 12233445667788888999999999997
Q ss_pred hcc
Q psy2379 455 KRH 457 (585)
Q Consensus 455 ~~~ 457 (585)
++|
T Consensus 214 ~mr 216 (663)
T 1fft_A 214 KMR 216 (663)
T ss_dssp HCS
T ss_pred Hhc
Confidence 664
No 13
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ...
Probab=95.73 E-value=0.43 Score=52.38 Aligned_cols=236 Identities=17% Similarity=0.197 Sum_probs=124.0
Q ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhhhHHHHHHHHHHhhhcccCCcccccCC
Q psy2379 28 PPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYP 107 (585)
Q Consensus 28 ~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl~~~g~~l~~~s~~~G~~~~~gWt~Yp 107 (585)
||-.|..++=.=|---++.+..|+ +|...+++|+..|.|.+-..+....++|. +...++.++.
T Consensus 227 dp~l~qhLFWffGHpeVyi~ilP~-~g~is~ii~~~sg~k~ifg~~~~i~a~~~------i~~l~~~Vw~---------- 289 (514)
T 1v54_A 227 DPILYQHLFWFFGHPEVYILILPG-FGMISHIVTYYSGKKEPFGYMGMVWAMMS------IGFLGFIVWA---------- 289 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCSSCTTHHHHHHHHHH------HHHHTTSCGG----------
T ss_pred chHHHhHhheehhhhhHHHHHHHH-HHHHHHHHHHHhCCCcccchHHHHHHHHH------HHHHHhhhcc----------
Confidence 344455554443444556688897 89999999999988766333333233332 2223333321
Q ss_pred CCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2379 108 PLSGIAQSPGVGVD---YYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSV-L 183 (585)
Q Consensus 108 Pls~~~~~p~~~~d---~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf~w~~l~t~il~l~a~p~l~~a-~ 183 (585)
-..+.++.+.| +....-.+.++=+.+...|.+.|+.+.|-+ .+ +...|..... ..+..-.+++- +
T Consensus 290 ---HHmf~~g~~~~~~~~f~~~T~iiavPtgikvf~wl~Tl~g~~~~----~~-~~~~~~~g~i---~~F~~GGltGv~l 358 (514)
T 1v54_A 290 ---HHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIK----WS-PAMMWALGFI---FLFTVGGLTGIVL 358 (514)
T ss_dssp ---GGCTTSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC----CC-HHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ---cceecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC----CC-chHHHHHHHH---HHHhhhcchHhhc
Confidence 12233333333 222222334555666677888888654433 12 4445555422 22222233211 1
Q ss_pred HhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHH---hhhhhHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHh
Q psy2379 184 FLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYI---LVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLS 260 (585)
Q Consensus 184 ~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi---~ilPa~gi~~~iip~~~~kplfsy~~~v~a~~~i~~ls 260 (585)
....+|..+.-+ .|-=||=.-.+ .+...+|.+|+..|+.+||+ ++.|+..+.+|...+--
T Consensus 359 a~~~~d~~~HdT----------------~~VvaHfH~vl~~g~vf~~~a~~y~w~P~~~G~~-~~~~l~~~~fwl~~iG~ 421 (514)
T 1v54_A 359 ANSSLDIVLHDT----------------YYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYT-LNDTWAKIHFAIMFVGV 421 (514)
T ss_dssp HCHHHHHHHTTB----------------HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSBC-CCHHHHHHHHHHHHHHH
T ss_pred ccccccccccCc----------------eEEEeeEEeeehHHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHH
Confidence 112334333222 24445543322 23345799999999999998 59999999987543222
Q ss_pred -hHhccccccc-cCCc-------hh---HHHHHHHHHHHHhhchhHHHHHHHHhhcCCcc
Q psy2379 261 -YIVWLHHFFT-MGSG-------AN---VNAFFGITTMIISIPTGAKIFNWLFTMYRGRI 308 (585)
Q Consensus 261 -~~vw~HHmf~-~g~~-------~~---~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i 308 (585)
...-..|... .|+| +. .+...++.+.+..+-..+-++|.+.++.++|.
T Consensus 422 ~l~f~p~~~lGl~GmpRR~~~y~~~~~~~~~i~siG~~i~~~g~llf~~~l~~s~~~~~~ 481 (514)
T 1v54_A 422 NMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKRE 481 (514)
T ss_dssp HHHHTHHHHHHHTTCBTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHhhhcceeeccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1122233221 2332 22 34445666666666566677888888887654
No 14
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=95.22 E-value=0.017 Score=66.50 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=87.3
Q ss_pred hhHHHHHHHhhhhhhccccceeecccccccc-----------cccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccc-
Q psy2379 312 VPILWTIGFMITFVIGGMAGVILAVPAANFL-----------LHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGY- 379 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG~tGv~la~~~~d~~-----------~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~- 379 (585)
...++.+.+.++|++|++-|.+++..-.+-. .....-...|--.++. .+..+++|..||..|++.||
T Consensus 304 i~~~yf~~a~~~flvg~llGll~r~~l~~P~~~~gl~~l~~~~~Yn~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g~d 382 (800)
T 3ayf_A 304 KAGKYFVVVSALFFVQTMFGALLAHYYTEPDSFFGINWIYDILPFNIAKGYHLQLAIF-WIATAWLGMGIFIAPLVGGQE 382 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCSTTCSHHHHHSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC
Confidence 4456788888888999999987663322211 1112223466644555 78888899999999999998
Q ss_pred c-CCchhhhHHHHHHHHHHHHHhhhhhhcc--c-CC------cccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2379 380 K-LEPFWGKCSFWFWLIGFYVAFMPLYILG--F-MG------VTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQL 449 (585)
Q Consensus 380 ~-~~~~l~~~~fwl~~iG~~l~f~pm~~~G--l-~G------mpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl 449 (585)
+ .++++.+++||++.+|..+...+..... . .| .+=| +|.+..+ ++. +.+.+|.+++.+|+
T Consensus 383 p~~~~~L~~~~fwl~~~g~vl~~~s~~~G~~g~~~~~wf~~~~~G~--ey~e~~~-~~~-------i~l~vg~ll~~in~ 452 (800)
T 3ayf_A 383 PKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLGNEWFLLGHQGW--EYIELGR-IWQ-------IILVVGMLLWLFIV 452 (800)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTHHHHSCCCB--TTBCSCH-HHH-------HHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhccccccccceeeccCCCc--cccchHH-HHH-------HHHHHHHHHHHHHH
Confidence 4 3678999999999999988887766531 1 11 1100 2322121 221 33448888999999
Q ss_pred HHHHHh
Q psy2379 450 IVSYRK 455 (585)
Q Consensus 450 ~~Sl~~ 455 (585)
+.++.+
T Consensus 453 i~TI~~ 458 (800)
T 3ayf_A 453 FRGVKR 458 (800)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 15
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=94.96 E-value=0.013 Score=58.96 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=46.7
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2379 512 FQDILMPKNTNIGILISIFSLIMGFALVW--H--MWLLTIISFIITLIIVIYNTFNYKR 566 (585)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~ 566 (585)
.++.|+|++|++|+..|++.+.+..|++. | .+++..+|++.++.+++.|.+|-.+
T Consensus 5 ~~~~hl~~~SpwPl~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~W~~dv~~ 63 (261)
T 1v54_C 5 THAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIR 63 (261)
T ss_dssp CSCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccc
Confidence 45789999999999999999999999986 5 3457889999999999999886443
No 16
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=94.32 E-value=0.025 Score=56.99 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=46.9
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhcCCCCC
Q psy2379 512 FQDILMPKNTNIGILISIFSLIMGFALVW--HMW--LLTIISFIITLIIVIYNTFNYKRN 567 (585)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~--~l~~~~~~~~~~~~~~~~~~~~~~ 567 (585)
.++.|+|++|++|+..|++.+.+..|++. |.. ++..+|++.++.+++.|.+|-.+|
T Consensus 6 ~~~~hl~~~SpwPl~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~W~~dv~~e 65 (266)
T 1m56_C 6 NHDYHILPPSIWPFMASVGAFVMLFGAVLWMHGSGPWMGLIGLVVVLYTMFGWWSDVVTE 65 (266)
T ss_dssp CCCSCCCCCCSHHHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45789999999999999999999999986 432 578899999999999998864443
No 17
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ...
Probab=93.95 E-value=0.07 Score=59.26 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=91.0
Q ss_pred hhHHHHHHHhhhhhhccccceeeccc--cccccc--------ccceE--EEeeeehhhhhhHHHHHHHHHHHHhhhhccc
Q psy2379 312 VPILWTIGFMITFVIGGMAGVILAVP--AANFLL--------HNSLF--LVAHFHNVIIGGVLFGLMSGINYWFPKAFGY 379 (585)
Q Consensus 312 ~p~lf~l~~i~~f~iGG~tGv~la~~--~~d~~~--------H~T~~--VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~ 379 (585)
...++.+.++..+.+|+.-|.++... ..|..- .++|. +.+|-=.++...+...++|..+|..|++.|.
T Consensus 27 Ig~~Y~i~a~~~~liG~~~sllirl~l~~~~~~~~~~~~l~~~~~Yn~i~T~Hg~iMiff~~mp~~~Gfgn~lvp~~lg~ 106 (569)
T 3s8f_A 27 ATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNM 106 (569)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHTTTCCCHHHHHHHSTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCchhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35667777888888888877765422 112110 12333 3466544566666666666666667999998
Q ss_pred cCCchhhhHHHHHHHHHHHHHhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 380 KLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 380 ~~~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
+.+.|+.+.+||++..|..+...++.. |-.|. ....|++..-++ ...+|-.+.++|-++..+|++.++.+.|
T Consensus 107 pd~prln~~SfWll~~~~~ll~~s~~~-ggagt--GWT~YpPLs~~~---~~~~sL~l~gvsSilgaiNfi~Ti~~mr 178 (569)
T 3s8f_A 107 RPNMGLMWLSWWMAFIGLVVAALPLLA-NEATV--LYTFYPPLKGHW---AFYLGASVFVLSTWVSIYIVLDLWRRWK 178 (569)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCS--TTTTCTTBCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcc-CCCCC--CCccCcchhhCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778899999999999999998888643 32332 223454321122 2234667778888889999999987543
No 18
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=92.18 E-value=0.037 Score=56.01 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=46.2
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHH--HHH----------HHHHHHHHHHHHHHHHHhcCCCCC
Q psy2379 512 FQDILMPKNTNIGILISIFSLIMGFALVW--HMW----------LLTIISFIITLIIVIYNTFNYKRN 567 (585)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~----------~l~~~~~~~~~~~~~~~~~~~~~~ 567 (585)
.++.|+|++|++|++.|++.+.+..|++. |.+ ++..+|++.++.++..|.+|-.+|
T Consensus 5 ~~~~hl~~~SpwPl~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~dv~~e 72 (273)
T 1qle_C 5 NHDYQILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWADVVNE 72 (273)
T ss_dssp TCCSCCCCCCSHHHHHHHHHHHHHHHHHHHHTCCCCSSSCCCSSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeecCCCCchHHHHHHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35789999999999999999999999986 421 477889999999999998764433
No 19
>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=88.38 E-value=0.082 Score=61.00 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=92.1
Q ss_pred hHHHHHHHhhhhhhccccceeec----ccccccc--cccceEEEeeeehhhhhhHHHH-HHHHHHHHhhhhcccc-C-Cc
Q psy2379 313 PILWTIGFMITFVIGGMAGVILA----VPAANFL--LHNSLFLVAHFHNVIIGGVLFG-LMSGINYWFPKAFGYK-L-EP 383 (585)
Q Consensus 313 p~lf~l~~i~~f~iGG~tGv~la----~~~~d~~--~H~T~~VvaHfH~~l~gg~~f~-~~ag~yyw~Pkl~G~~-~-~~ 383 (585)
-.++.+.++..+.+|+.-|++.. .+..+.. .+...-+.+|-=.++...+... ++|-.+|..|++.|.+ + .+
T Consensus 28 g~~y~~~~~~~~~~G~~~~~liR~el~~p~~~~~~~~~Yn~~~T~Hg~~Mif~~~mp~~~~gf~n~lvPl~lga~dmafp 107 (791)
T 2yev_A 28 GLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALP 107 (791)
Confidence 45777788888999998887643 3333221 2233445577666665555545 5677777789999843 5 89
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcc-cCCcccccccccchh-H-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy2379 384 FWGKCSFWFWLIGFYVAFMPLYILG-FMGVTRRMSHFEDIS-L-QIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRH 457 (585)
Q Consensus 384 ~l~~~~fwl~~iG~~l~f~pm~~~G-l~GmpRR~~~y~~~~-~-~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~ 457 (585)
|+.+..||++..|..+...++...| -.|.-+. .|++.. - .+.--..-+|-.+.++|.++..+|++.++.+.|
T Consensus 108 rln~~sfwl~~~~~~l~~~s~~~~g~~~~~gWT--~YpPls~~~~~~vd~~i~~l~l~gvssil~~iNfi~Ti~~~r 182 (791)
T 2yev_A 108 RVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT--FYYPFSAQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLR 182 (791)
Confidence 9999999999999999888777622 2332221 232211 0 111123344556667888889999999986554
Done!