RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2379
(585 letters)
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 836 bits (2162), Expect = 0.0
Identities = 380/586 (64%), Positives = 467/586 (79%), Gaps = 1/586 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W MK+ + K D +++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIRL 585
WH+W L I+ F +I I +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFDE 653
>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET:
FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus
thermophilus}
Length = 791
Score = 657 bits (1696), Expect = 0.0
Identities = 187/591 (31%), Positives = 300/591 (50%), Gaps = 15/591 (2%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFI 59
++++R Q A+ + +L E YNQI T HG M+FF + +TG NF+
Sbjct: 38 AFALAGVFSLLIRTQLAVP---NNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFV 94
Query: 60 VPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFI-GEFASTGWLGYPPLSGIAQSPGV 118
VPL +GARDVA P +N S+W G +L ++S F G S GW Y P S
Sbjct: 95 VPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFSA---QSES 151
Query: 119 GVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPV 178
GVD+Y+ ++ + G +LL N +ATI +RA GM L MPI+ W+ ++L + +
Sbjct: 152 GVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAG 211
Query: 179 LTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTF 238
LT+ L L+R IG +F +GG+ +++ W + HP VY+++LP GI +EV STF
Sbjct: 212 LTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVASTF 271
Query: 239 SSKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFN 298
+ K LFGY MV+A + I +L +VW HH FT+G F T +I++PTG K+FN
Sbjct: 272 ARKPLFGYRQMVWAQMGIVVLGTMVWAHHMFTVGESTLFQIAFAFFTALIAVPTGVKLFN 331
Query: 299 WLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVII 358
+ T++ G+++ + P+ W +GF+ F++GG+ GV+L++ ++ H+S F+VAHFHNV++
Sbjct: 332 IIGTLWGGKLQMKTPLYWVLGFIFNFLLGGITGVMLSMTPLDYQFHDSYFVVAHFHNVLM 391
Query: 359 GGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSH 418
G FG +G+ YW+PK G + G+ FW +L+G+ + F+P Y LG++G+ RR
Sbjct: 392 AGSGFGAFAGLYYWWPKMTGRMYDERLGRLHFWLFLVGYLLTFLPQYALGYLGMPRRYYT 451
Query: 419 FED--ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWST 476
+ ++ G ++ +G L +I + S R +PW G TLEW T
Sbjct: 452 YNADIAGWPELNLLSTIGAYILGLGGLVWIYTMWKSLRSGP---KAPDNPWGGYTLEWLT 508
Query: 477 SSPPPVYNFA--FIPLIHQSDSWWYMKKNNFKFPKDKFQDILMPKNTNIGILISIFSLIM 534
+SPP +NF + KK + + I +P ++ +
Sbjct: 509 ASPPKAHNFDVKLPTEFPSERPLYDWKKKGVELKPEDPAHIHLPNSSFWPFYSAATLFAF 568
Query: 535 GFALVWHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIRL 585
A+ + + L + + Y E T K +
Sbjct: 569 FVAVAALPVPNVWMWVFLALFAYGLVRWALEDEYSHPVEHHTVTGKSNAWM 619
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A*
3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A*
1ar1_A* 3ehb_A* 1qle_A*
Length = 566
Score = 429 bits (1106), Expect = e-145
Identities = 175/470 (37%), Positives = 273/470 (58%), Gaps = 9/470 (1%)
Query: 32 YNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVM 90
+N + T HG++M+FFV +P L G N+ +PL IGA D+AFP +NNLS+W+ G L +
Sbjct: 95 WNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAV 154
Query: 91 ISLFIGEF-----ASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATI 145
SLF + GW+ YPPLS G D I+++ ++G ++L INMI T
Sbjct: 155 ASLFAPGGNGQLGSGIGWVLYPPLS--TSESGYSTDLAIFAVHLSGASSILGAINMITTF 212
Query: 146 IKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNI 205
+ MRAPGM + +P+F W+ T LI+ A PVL + + DR GT FF GG+
Sbjct: 213 LNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLLTDRNFGTTFFQPSGGGDP 272
Query: 206 MMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWL 265
++Y +++W +GHPEVYI+VLP FGI S V++TF+ K +FGY MVYA V I +L ++VW
Sbjct: 273 VLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFVVWA 332
Query: 266 HHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFV 325
HH +T G ++F + TM+I++PTG KIF+W+ TM+ G I + P+LW +GF+ F
Sbjct: 333 HHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFT 392
Query: 326 IGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFW 385
+GG+ G++L+ + + H++ ++VAHFH V+ G +FG+ +GI +W K G + +
Sbjct: 393 VGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQYPEWA 452
Query: 386 GKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSF 445
GK FW +G + F P + LG G+ RR + + + W +++ G L L F
Sbjct: 453 GKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFATWNFVSSLGAFLSFASFLFF 511
Query: 446 IIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPPPVYNFAFIPLIHQSD 495
+ + + + + + TLEW+ +SPPP + F +P +
Sbjct: 512 LGVIFYTLTRGARVTANNYWNEHADTLEWTLTSPPPEHTFEQLPKREDWE 561
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain,
lipid cubic phase, monoolein, peroxide, electron
transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A*
3qju_A* 3qjv_A* 4esl_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A*
3qjt_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Length = 569
Score = 404 bits (1040), Expect = e-135
Identities = 96/528 (18%), Positives = 171/528 (32%), Gaps = 60/528 (11%)
Query: 1 MLFRGFTDAVMMRLQQA---ISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIIN 57
L G L + Y Q T HGV+ I+
Sbjct: 38 ALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMV 97
Query: 58 FIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPG 117
++ ++ R L LS+WM G ++ + L E A+ + YPPL G
Sbjct: 98 YLPARELNMRP--NMGLMWLSWWMAFIGLVVAALPLLANE-ATVLYTFYPPLKG------ 148
Query: 118 VGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFP 177
+ + + T + I ++ + + P+ T+ A+ ++ A
Sbjct: 149 --HWAFYLGASVFVLSTWV-SIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASL 205
Query: 178 VLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVST 237
L L L G G + ++ L W GHP VY +LP + I ++
Sbjct: 206 GLVLEAVLFLLPWSFGLVE-----GVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPK 260
Query: 238 FSSKRLFGYSSMVYATVVITLLSYIVWLHHFFT-MGSGANVNAFFGITTMIISIPTGAKI 296
+ +L A ++ LLS V HH F G + T+ +++P+
Sbjct: 261 QAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTA 320
Query: 297 FN-------------------WLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVP 337
F W+ + F P+L +G F+ GG G++ A
Sbjct: 321 FTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLG----FIPGGAGGIVNASF 376
Query: 338 AANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFW---GKCSFWFWL 394
++++HN+ ++ HFH + V M + + P G + G W W
Sbjct: 377 TLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWF 436
Query: 395 IGFYVAFMPLYILGFMGVTRRMSHFE----DISLQIWFQIAAFGTLLIAMGILSFIIQLI 450
+G + + L+ G + V RR + + +++ + +L FI L
Sbjct: 437 LGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLF 496
Query: 451 VSYRKRHTLIDITGDPWNGRTLEWSTSSPPPVYNFAFIPLIHQSDSWW 498
R + S P L+ D
Sbjct: 497 SVLLSRERKPE---LAEAPLPFAEVISGPEDR------RLVLAMDRIG 535
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A*
1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A*
2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A*
3abm_A* 3ag1_A* ...
Length = 514
Score = 398 bits (1025), Expect = e-133
Identities = 174/463 (37%), Positives = 274/463 (59%), Gaps = 6/463 (1%)
Query: 32 YNQIFTAHGVIMIFFVAMP-LVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVM 90
YN + TAH +MIFF+ MP ++ G N++VPL IGA D+AFP +NN+SFW+ +L++
Sbjct: 54 YNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLL 113
Query: 91 ISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRA 150
S + A TGW YPPL+G G VD I+SL +AG+ ++L IN I TII M+
Sbjct: 114 ASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKP 173
Query: 151 PGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVN 210
P M P+F W+ + T +L++ + PVL + + + DR + T FF GG+ ++Y +
Sbjct: 174 PAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQH 233
Query: 211 LIWIWGHPEVYILVLPVFGIFSEVVSTFSSKR-LFGYSSMVYATVVITLLSYIVWLHHFF 269
L W +GHPEVYIL+LP FG+ S +V+ +S K+ FGY MV+A + I L +IVW HH F
Sbjct: 234 LFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMF 293
Query: 270 TMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGGM 329
T+G + A+F TMII+IPTG K+F+WL T++ G I++ ++W +GF+ F +GG+
Sbjct: 294 TVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGL 353
Query: 330 AGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCS 389
G++LA + + +LH++ ++VAHFH V+ G +F +M G +WFP GY L W K
Sbjct: 354 TGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIH 413
Query: 390 FWFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQL 449
F +G + F P + LG G+ RR S + D + +W I++ G+ + ++ + +
Sbjct: 414 FAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFII 472
Query: 450 IVSYRKRHTLIDITGDPWNGRTLEWSTSSPPPVYNFAFIPLIH 492
++ + ++ + LEW PPP + F ++
Sbjct: 473 WEAFASKREVLTV---DLTTTNLEWLNGCPPPYHTFEEPTYVN 512
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 474
Score = 290 bits (745), Expect = 3e-92
Identities = 62/470 (13%), Positives = 142/470 (30%), Gaps = 47/470 (10%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
G V + Q A + LP + ++ H +IF + + V
Sbjct: 24 WGIVGMGLGVFIAAQLA--WPFLNFDLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYSV 81
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
+ P L +FW +L ISL +G +S +
Sbjct: 82 QRTCQTT-LFAPKLAAFTFWGWQLVILLAAISLPLGFTSSKEYA---------------- 124
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
+ + I + + T+ K + + + N + + +V +
Sbjct: 125 ELEWPIDILITIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGAFILTVAILHVVNNLEIPV 184
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ + + M+ W + + L GI V +
Sbjct: 185 T----------AMKSYSLYAGATDAMVQ---WWYGHNAVGFFLTAGFLGIMYYFVPKQAE 231
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
+ ++ Y + + + HH + + ++I+ P+ + N +
Sbjct: 232 RPVYSYRLSIVHFWALITVYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGMINGM 291
Query: 301 FTMYRG--RIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVII 358
T+ ++R + + + + + + + G ++A+ N L H + + + H H +
Sbjct: 292 MTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGAL 351
Query: 359 GGVLFGLMSGINYWFPKAFGYKLEPF--WGKCSFWFWLIGFYVAFMPLYILGFMGVTRRM 416
G V + + + PK FG + FW IG + +++ G
Sbjct: 352 GWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATIGTVLYIASMWVNGIAQGLMWR 411
Query: 417 SHFED-----------ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRK 455
+ +D + F + G + G+L + +
Sbjct: 412 AINDDGTLTYSFVESLEASHPGFVVRMIGGAIFFAGMLVMAYNTWRTVQA 461
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 170 bits (433), Expect = 2e-45
Identities = 69/456 (15%), Positives = 141/456 (30%), Gaps = 45/456 (9%)
Query: 31 HYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVM 90
+N H + IF++A + G+ FI PL G L +L FW M
Sbjct: 347 PFNIAKGYHLQLAIFWIATAWL-GMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSM 405
Query: 91 ISLFIGEFAS--TGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKM 148
I ++G W G + +G LL + + +
Sbjct: 406 IGQWLGVNGYLGNEWFLLGHQGWEYIELGRIWQIILV------VGMLLWLFIVFRGVKRG 459
Query: 149 RAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMY 208
+ + + + F T+ + +
Sbjct: 460 LKRESDKGGLIHLLFYSAIA-VPFFYIFAFFIQPDTNFTMADFW-------------RWW 505
Query: 209 VNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHF 268
+ +W+ G EV+ +V+ F + V + ++ + ++ I HH+
Sbjct: 506 IIHLWVEGIFEVFAVVVIGFLL----VQLRLVTKKSTVRALYFQFTILLGSGVIGIGHHY 561
Query: 269 FTMGSGANVNAFFGITTMIISIPT---GAKIFNWLFTMYRGR--IRFEVPILWTIGFMI- 322
+ GS A + + + IP + + M G ++ + I I
Sbjct: 562 YYNGSPEVWIALGAVFSALEVIPLTLLILEAYEQYKMMRDGGANFPYKATFWFLISTAIW 621
Query: 323 TFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKL- 381
V G+ G ++ +PA ++ H AH H ++G ++ + Y +
Sbjct: 622 NLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAIAVLLYSLRNIVKPEAW 681
Query: 382 EPFWGKCSFWFWLIGFYV-AFMPLYILGFMGVTRRMSH----------FEDISLQIWFQI 430
W K S W IG + L +G + + H + +Q +
Sbjct: 682 NDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAFIHGYWASRSPSFLQQDVVQNLLLV 741
Query: 431 AAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDP 466
A + +G+++ ++ I + G+
Sbjct: 742 RAVPDTIFLIGVVALLVFAIKALFHLRKPTHGEGEE 777
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron
transport, heme, iron, membrane, CY membrane; HET: HEM
HEC; 2.70A {Pseudomonas aeruginosa}
Length = 465
Score = 153 bits (389), Expect = 5e-41
Identities = 67/443 (15%), Positives = 144/443 (32%), Gaps = 50/443 (11%)
Query: 27 LPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGA 86
P +N H ++I ++ + G ++VP + + P L + FW+ +
Sbjct: 48 FPAIPFNVARMVHTNLLIVWLLFGFM-GAAYYLVPEESDCE-LYSPKLAWILFWVFAAAG 105
Query: 87 ILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATII 146
+L ++ + +A L L + + + I L N+ T++
Sbjct: 106 VLTILGYLLVPYAGLARLTGNELWPTMGREFLEQPTISKAGIV--IVALGFLFNVGMTVL 163
Query: 147 KMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIM 206
+ R + ++ M AL + +
Sbjct: 164 RGRKTAISMVLMTGLIGLALLFLFSFYNPENLTRDKFYW--------------------- 202
Query: 207 MYVNLIWIWGHPEV-YILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWL 265
W H V + L + I + V+ + +Y + + L+S I+
Sbjct: 203 ------WWVVHLWVEGVWELIMGAILAFVLVKITGVDREVIEKWLYVIIAMALISGIIGT 256
Query: 266 -HHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGR--IRFEVPILWTIGFMI 322
HH+F +G + + + +P A + T+ R R LW +G +
Sbjct: 257 GHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFNTINRRRRDYPNRAVALWAMGTTV 316
Query: 323 T-FVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKL 381
F+ G+ G + + N+ H + AH H G +M+ I+Y P+ G
Sbjct: 317 MAFLGAGVWGFMHTLAPVNYYTHGTQLTAAHGHMAFYGAYAMIVMTIISYAMPRLRGIGE 376
Query: 382 EPFW-----GKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFED---------ISLQIW 427
FW + + L G + V + + L I+
Sbjct: 377 AMDNRSQVLEMWGFWLMTVAMVFITLFLSAAGVLQVWLQRMPADGAAMTFMATQDQLAIF 436
Query: 428 FQIAAFGTLLIAMGILSFIIQLI 450
+ + ++ +G++++++
Sbjct: 437 YWLREGAGVVFLIGLVAYLLSFR 459
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 31.0 bits (71), Expect = 1.2
Identities = 6/45 (13%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 523 IGILISIFSLIMGFALVWHM-WLLTIISFIITLIIVIYNTFNYKR 566
+ I + ++I+ ++++ + LT+ + I ++ + R
Sbjct: 140 MNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 1.9
Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 34/153 (22%)
Query: 50 PLVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPL 109
LV +I + L+ L +F WL P
Sbjct: 182 VLVGDLI-----------KFSAETLSELIRTTLDAE------KVFTQGLNILEWLENP-- 222
Query: 110 SGIAQSPGVGVDYYIWSLQIA--GIGTLLSGINMIATIIKMRAPGMKLMNM-PIFTWTAL 166
+ +P Y+ S+ I+ IG ++ + + T + G +
Sbjct: 223 ---SNTPD---KDYLLSIPISCPLIG-VIQLAHYVVT---AKLLGFTPGELRSYLKGATG 272
Query: 167 CTNILIVAAFP--VLTSVLFLSTLDRYIGTHFF 197
+ L+ A + F ++ + I FF
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 3.6
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 183 LFLSTLDRY----IGTHFFTNDLGGNI----MMYVNLIWI 214
L LD+Y IG H + + M++++ ++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 28.7 bits (65), Expect = 6.2
Identities = 3/34 (8%), Positives = 16/34 (47%)
Query: 526 LISIFSLIMGFALVWHMWLLTIISFIITLIIVIY 559
L+ + ++M ++ + + I +++ ++
Sbjct: 149 LLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.145 0.476
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,699,604
Number of extensions: 611974
Number of successful extensions: 1634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1541
Number of HSP's successfully gapped: 78
Length of query: 585
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 486
Effective length of database: 3,937,614
Effective search space: 1913680404
Effective search space used: 1913680404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.1 bits)